HHsearch alignment for GI: 254780382 and conserved domain: pfam03354

>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.

Probab=95.81  E-value=0.041  Score=32.53  Aligned_cols=70  Identities=14%  Similarity=0.066  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHH-----CC----CCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             89999999997-----69----979998279851789-999999999860652147827999828589999999998741
Q gi|254780382|r   26 PIQIKTIPLVL-----QR----HDVCGIAQTGTGKTA-SFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKY   95 (465)
Q Consensus        26 ~iQ~~~i~~~l-----~g----~dvi~~apTGsGKT~-~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~   95 (465)
T Consensus         1 PwQ~f~i~~ifGw~~~~g~Rrfr~~~i~v~RkNGKS~l~a~i~ly~~~~~---ge~~~ei~~~A~~~~QA~~~f~~~~~m   77 (473)
T pfam03354         1 PWQKFILGLMFGWRKGCGVRRFREAYVSVGRKNGKSYLMAIRVLYELLLG---GKSNQEILVAATTFKQAEKLFKYVKNQ   77 (473)
T ss_pred             CCHHHHHHHEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHC---CCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             94615625144189289988999999998268602699999999999709---983874999979899999999999999


Q ss_pred             CCC
Q ss_conf             023
Q gi|254780382|r   96 GKN   98 (465)
Q Consensus        96 ~~~   98 (465)
T Consensus        78 i~~   80 (473)
T pfam03354        78 VKL   80 (473)
T ss_pred             HHC
T ss_conf             973