HHsearch alignment for GI: 254780382 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=92.42 E-value=0.17 Score=28.50 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=31.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 6997999827985178999999999986065214782799982858999999999874102
Q gi|254780382|r 37 QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK 97 (465)
Q Consensus 37 ~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~ 97 (465)
T Consensus 18 ~gs~~LI~G~pGsGKT~-la~---qfl~~ga~-~~ge~~lYis-~ee~~~~l~~~~~~~g~ 72 (231)
T pfam06745 18 EGRVVLITGGPGTGKTI-FGL---QFLYNGAL-EYGEPGVYVT-LEEPPEDLRENAKSFGW 72 (231)
T ss_pred CCEEEEEECCCCCCHHH-HHH---HHHHHHHH-HCCCCEEEEE-ECCCHHHHHHHHHHCCC
T ss_conf 99699998589725999-999---99999998-6589689998-13799999999998299