HHsearch alignment for GI: 254780382 and conserved domain: smart00491
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.68 E-value=0.054 Score=31.74 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHCCCC---CEEEEEH--HHHHHHHCCCC--CCEEEEECCCC
Q ss_conf 20333234444201355---2388884--66464407887--65002002467
Q gi|254780382|r 279 IDQRSRMKILSNFKEGT---IQLMVAS--DLAARGLDIPD--VGHVFNFDVPN 324 (465)
Q Consensus 279 l~~~~R~~~~~~F~~g~---~~vLV~T--d~~~~GiDip~--v~~VI~~d~P~ 324 (465)
T Consensus 28 ~~~~~~~~~l~~f~~~~~~~gaiL~~v~~Gk~sEGiDf~~~~~r~viivglP~ 80 (142)
T smart00491 28 KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCEEEEEEEECCC
T ss_conf 98357999999999862369819999844157521505997765999970899