BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] (465 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040059|gb|ACT56855.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 465 Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/465 (100%), Positives = 465/465 (100%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML Sbjct: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE Sbjct: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT Sbjct: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ Sbjct: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV Sbjct: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI Sbjct: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI Sbjct: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL Sbjct: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465 >gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 459 Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/458 (80%), Positives = 406/458 (88%), Gaps = 1/458 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+DLGLSPKVVCAV DAGYV PTPIQ+KTIPLVLQRHDVCGIAQTGTGKTASFVLPML Sbjct: 1 MNFSDLGLSPKVVCAVADAGYVDPTPIQVKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 TILEKGRAR RMPRTLILEPTRELA+QVADNF+KYGKNYNL +ALLIGGIPFE QNKKLE Sbjct: 61 TILEKGRARARMPRTLILEPTRELASQVADNFQKYGKNYNLNIALLIGGIPFETQNKKLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP IQ+ITSL+PFTRQT Sbjct: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPDIQSITSLIPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATMT+ELQKVSE FLQNPKRIEVNTP STAETIEHCFVATY QYSKK L+Q+L++ Sbjct: 181 LLFSATMTEELQKVSEKFLQNPKRIEVNTPYSTAETIEHCFVATYPQYSKKFGLVQKLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD +KN IIFCNQKK+V +LC +LEKQGFSVCAIHGN+DQRSR+KIL +FKEGTIQLMV Sbjct: 241 EQDAIKNAIIFCNQKKDVASLCCALEKQGFSVCAIHGNMDQRSRIKILDSFKEGTIQLMV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASDLAARGLDIPDVGHVFNFDVPNR ENYIHRIGRTGRAGR GKAFTLV ED+K+IDAI Sbjct: 301 ASDLAARGLDIPDVGHVFNFDVPNRPENYIHRIGRTGRAGRSGKAFTLVTSEDVKYIDAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 EKLIEKK+ WL+GDLS+L P EK+D Q ++ KN I ST +KK YSSQ S I Sbjct: 361 EKLIEKKISWLDGDLSTLQPS-EKLDETQRSNTTKNKNIQNTSTKLSHKKKKYSSQTSRI 419 Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458 P KE IS+ QD QE+D ++GF+GN+PAFMLP+ + Sbjct: 420 PSKEEVVISQPYQDTQEHDIGAVGFKGNVPAFMLPREK 457 >gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84] gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84] Length = 506 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 278/422 (65%), Positives = 336/422 (79%), Gaps = 9/422 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP LQR D+CGIAQTGTGKTASFVLPMLT+ Sbjct: 4 FADLGLSQKVLSAVTDAGYTTPTPIQAGAIPFALQRRDICGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L +ALLIGG+ FE Q++KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQDRKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDHF RGKLLM+ +EI VIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP+R+EV+ P+STA+T+ FVA++ + +K A L+ L+++Q Sbjct: 184 FSATMPAEIQKLADRFLQNPERVEVSAPASTAKTVTQRFVASHGKDYEKRAALRDLIRAQ 243 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +KN IIFCN+K +V +L SL++ GFSV A+HG++DQRSR +L NF++G IQL+VAS Sbjct: 244 TDLKNAIIFCNRKVDVADLFRSLQRHGFSVGALHGDMDQRSRTTMLQNFRDGQIQLLVAS 303 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+PDVGHVFNFDVP +E+Y+HRIGRTGRAGR G AFTLV K D KHIDAIEK Sbjct: 304 DVAARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKHIDAIEK 363 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR----RKKNYSSQKS 418 LI + V WLNGDLS+L P E D + +R+ P K G +R R ++ SS KS Sbjct: 364 LIGEDVQWLNGDLSALPPAEEGGD--DNRSSRRREP---KGKGRERDRSPRGRSASSHKS 418 Query: 419 HI 420 I Sbjct: 419 DI 420 >gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 521 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 274/440 (62%), Positives = 338/440 (76%), Gaps = 1/440 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP L+R D+CGIAQTGTGKTASFVLPML++ Sbjct: 10 FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 70 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 129 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I ++PFTRQTL Sbjct: 130 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 189 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP+RIEV P+S AET+ FVA++ + +K A+L++L+++Q Sbjct: 190 FSATMPSEIQKLADRFLQNPERIEVAKPASAAETVTQRFVASHGKDYEKRAVLRELVRAQ 249 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +KN I+FCN+KK+V +L SLE+ GFSV A+HG++DQRSR L +F++G +QL+VAS Sbjct: 250 TELKNAIVFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 309 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK Sbjct: 310 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 369 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQKSHIP 421 LI +KV+WL+GDL+SL PP E ++ + G DR ++N + Sbjct: 370 LIGEKVEWLSGDLTSLPPPAEDSRDSERPRRNGRERGARDGAGRDRAPRENGDKDRGRGR 429 Query: 422 LKESEKISKLQQDIQENDAD 441 + K DIQ+N D Sbjct: 430 GNRAAASHKSDNDIQDNGVD 449 >gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512] Length = 499 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 266/384 (69%), Positives = 322/384 (83%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP L+R D+CGIAQTGTGKTASFVLPML++ Sbjct: 4 FADLGLSQKVLSAVADAGYSTPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP+R+EV P+S A+T+ FVA++++ +K A+L++L+++Q Sbjct: 184 FSATMPPEIQKLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 243 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +KN IIFCN+KK+V +L SLE+ GFSV A+HG++DQRSR +L NF++G +QL+VAS Sbjct: 244 GELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQLLVAS 303 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 363 Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386 LI +KV+WLNGDL+SL P E D Sbjct: 364 LIGEKVEWLNGDLNSLPPAEEGKD 387 >gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652] gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652] Length = 527 Score = 568 bits (1464), Expect = e-160, Method: Compositional matrix adjust. Identities = 266/384 (69%), Positives = 323/384 (84%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP L+R D+CGIAQTGTGKTASFVLPML++ Sbjct: 26 FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 85 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 86 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 145 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 146 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 205 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP+RIEV P+STA+T+ FVA++++ +K A+L++L+++Q Sbjct: 206 FSATMPPEIQKLADRFLQNPERIEVAKPASTAKTVTQRFVASHSKDYEKRAVLRELVRAQ 265 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +KN IIFCN+KK+V +L SLE+ GFSV A+HG++DQRSR +L NF++G +QL+VAS Sbjct: 266 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQLLVAS 325 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK Sbjct: 326 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 385 Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386 LI +KV+WL+GD++SL P E D Sbjct: 386 LIGEKVEWLSGDVNSLPPAEENAD 409 >gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42] gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42] Length = 527 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 266/384 (69%), Positives = 322/384 (83%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP L+R D+CGIAQTGTGKTASFVLPML++ Sbjct: 26 FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 85 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 86 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 145 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 146 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 205 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP+RIEV P+S A+T+ FVA++++ +K A+L++L+++Q Sbjct: 206 FSATMPPEIQKLADRFLQNPERIEVARPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 265 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +KN IIFCN+KK+V +L SLE+ GF+V A+HG++DQRSR +L NF++G +QL+VAS Sbjct: 266 TELKNAIIFCNRKKDVADLFRSLERHGFNVGALHGDMDQRSRTMMLQNFRDGNLQLLVAS 325 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK Sbjct: 326 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 385 Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386 LI +KV+WLNGDL+SL P E D Sbjct: 386 LIGEKVEWLNGDLNSLPPAEESAD 409 >gi|116252340|ref|YP_768178.1| cold-shock DeaD-box protein A (ATP-dependent RNA helicase) [Rhizobium leguminosarum bv. viciae 3841] gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase) [Rhizobium leguminosarum bv. viciae 3841] Length = 521 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 274/440 (62%), Positives = 337/440 (76%), Gaps = 1/440 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP L+R D+CGIAQTGTGKTASFVLPML++ Sbjct: 10 FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 70 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 129 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I ++PFTRQTL Sbjct: 130 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 189 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP+RIEV P+S A T+ FVA++ + +K A+L++L+++Q Sbjct: 190 FSATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQRFVASHGKDYEKRAVLRELVRAQ 249 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +KN IIFCN+KK+V +L SLE+ GFSV A+HG++DQRSR L +F++G +QL+VAS Sbjct: 250 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 309 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK Sbjct: 310 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 369 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQKSHIP 421 LI +KV+WL+GDL+SL PP E ++ + G DR ++N + Sbjct: 370 LIGQKVEWLSGDLTSLPPPAEDSRDSERPRRNSRERGARDGAGRDRAPRENGDKDRGRGR 429 Query: 422 LKESEKISKLQQDIQENDAD 441 + K DIQ+N D Sbjct: 430 GNRAAASHKSDIDIQDNGVD 449 >gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56] Length = 420 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 264/384 (68%), Positives = 322/384 (83%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP L+R D+CGIAQTGTGKTASFVLPML++ Sbjct: 4 FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP+RIEV P+S A+T+ FVA++++ +K A+L++L+++Q Sbjct: 184 FSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 243 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +KN IIFCN+KK+V +L SLE+ GFSV A+HG++DQRSR +L +F++G +QL+VAS Sbjct: 244 GELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQLLVAS 303 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 363 Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386 LI +KV+WL+GD++SL P E D Sbjct: 364 LIGEKVEWLSGDVNSLPPAEESAD 387 >gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5] Length = 398 Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust. Identities = 264/384 (68%), Positives = 322/384 (83%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP L+R D+CGIAQTGTGKTASFVLPML++ Sbjct: 4 FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP+RIEV P+S A+T+ FVA++++ +K A+L++L+++Q Sbjct: 184 FSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 243 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +KN IIFCN+KK+V +L SLE+ GFSV A+HG++DQRSR +L +F++G +QL+VAS Sbjct: 244 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQLLVAS 303 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 363 Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386 LI +K++WLNGDL++L P E D Sbjct: 364 LIGEKIEWLNGDLNALPPAEEGKD 387 >gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234] gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234] Length = 501 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 264/382 (69%), Positives = 316/382 (82%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FADLGLS KV+ AV DAGY PTPIQ IP LQR D+ GIAQTGTGKTASFVLPMLT Sbjct: 3 NFADLGLSQKVLSAVTDAGYATPTPIQAGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEKGRAR RMPRTLILEPTRELAAQVA+NF+KYGKN+ L +ALLIGG+ F+ Q++KLER Sbjct: 63 LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GADVLICTPGR+LDHF RGKLLM +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 123 GADVLICTPGRLLDHFERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+QK+++ FLQNP+R+EV P+STA T+ FVA + + +K A+L+ L+++ Sbjct: 183 FFSATMPPEIQKLADRFLQNPERVEVARPASTANTVTQRFVAAHGKDYEKRAVLRDLIRA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q +KN IIFCN+KK+V L SL++ GFSV A+HG++DQRSRM +L+NFK+G IQL+VA Sbjct: 243 QGELKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIQLLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR G +FT+V K D K DAIE Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDTKFSDAIE 362 Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383 KLI + V+WLNGDLS L P+E Sbjct: 363 KLIGQTVEWLNGDLSQLPEPME 384 >gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 505 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 262/384 (68%), Positives = 321/384 (83%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP L+R D+CGIAQTGTGKTASFVLPML++ Sbjct: 4 FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I ++PFTRQTL Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP+RIEV P+S A+T+ FVA++++ +K A+L++L+++Q Sbjct: 184 FSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQ 243 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +KN IIFCN+KK+V +L SLE+ GFSV A+HG++DQRSR L +F++G +QL+VAS Sbjct: 244 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 303 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G +FTLV K D K +DAIEK Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASFTLVTKRDSKFVDAIEK 363 Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386 LI +KV+WL+GD++SL P E D Sbjct: 364 LIGEKVEWLSGDVNSLPPAEESAD 387 >gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3] gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3] Length = 533 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 263/385 (68%), Positives = 320/385 (83%), Gaps = 1/385 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGLS KV+ A+ DAGY PTPIQ IP L++ D+CGIAQTGTGKTASFVLPMLT+ Sbjct: 33 FSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTL 92 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 93 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERG 152 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDH RGKLLM +EILVIDEADRMLDMGFIP I+ I ++PFTRQTL Sbjct: 153 ADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 212 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP RIEV PSSTA+T+ VA++ + +K A+L+ L++++ Sbjct: 213 FSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRAE 272 Query: 243 DT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + +KN IIFCN+KK+V +L SL++ GFSV A+HG++DQRSR +L NF++G + L+VA Sbjct: 273 EAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVA 332 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFTLV K D K++DAIE Sbjct: 333 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIE 392 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID 386 KLI +KV+WLNGDLSSL P+E + Sbjct: 393 KLITEKVEWLNGDLSSLPAPMESFE 417 >gi|150396691|ref|YP_001327158.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium medicae WSM419] gi|150028206|gb|ABR60323.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae WSM419] Length = 499 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 270/417 (64%), Positives = 329/417 (78%), Gaps = 5/417 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FADLGLS KV+ AV DAGY PTPIQI IP LQR D+ GIAQTGTGKTASFVLPMLT Sbjct: 3 NFADLGLSQKVLSAVTDAGYTIPTPIQIGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEKGRAR RMPRTLILEPTRELAAQVA+NF+KYGKN+ L +ALLIGG+ F+ Q++KLER Sbjct: 63 LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GADVLICTPGR+LDH RGKLLM+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 123 GADVLICTPGRLLDHCERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+QK+++ FLQNP+R+EV SSTA T+ VA + + +K A+L++L++S Sbjct: 183 FFSATMPPEIQKLADRFLQNPERVEVARRSSTAITVTQRLVAAHGKDYEKRAVLRELIRS 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q+ +KN IIFCN+KK+V L SL++ GFSV A+HG++DQRSRM +L+NFK+G I+L+VA Sbjct: 243 QEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR G +FT+V K DIK DAIE Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDIKFADAIE 362 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 KLI ++V+W NGDLS L P+E H+ R +K +R K S K+ Sbjct: 363 KLIGQEVEWHNGDLSELPEPME-----SHDSRRDRGSDGRKDRKRERPVKTRSDHKA 414 >gi|15965498|ref|NP_385851.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti 1021] gi|307302618|ref|ZP_07582374.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti BL225C] gi|307318465|ref|ZP_07597899.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83] gi|15074679|emb|CAC46324.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021] gi|306895805|gb|EFN26557.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83] gi|306902982|gb|EFN33573.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti BL225C] Length = 499 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 264/385 (68%), Positives = 318/385 (82%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FADLGLS KV+ AV DAGY PTPIQ+ IP LQR D+ GIAQTGTGKTASFVLPMLT Sbjct: 3 NFADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEKGRAR RMPRTLILEPTRELAAQVA+NF+KYGKN+ L +ALLIGG+ F+ Q++KLER Sbjct: 63 LLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GADVLICTPGR+LDH RGKLLM +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 123 GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+QK+++ FLQNP+R+EV SSTA T+ FVA + + +K A+L++L++S Sbjct: 183 FFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLRELIRS 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q+ +KN IIFCN+KK+V L SL++ GFSV A+HG++DQRSRM +L+NFK+G I+L+VA Sbjct: 243 QEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR G AFT+V K + K DAIE Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSDAIE 362 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID 386 KLI +KV+W NGDLS L P+E D Sbjct: 363 KLIGQKVEWFNGDLSELPEPMESHD 387 >gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58] gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58] Length = 503 Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust. Identities = 261/385 (67%), Positives = 319/385 (82%), Gaps = 1/385 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGLS KV+ A+ DAGY PTPIQ IP L++ D+CGIAQTGTGKTASFVLPMLT+ Sbjct: 4 FSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDH RGKLLM +EILVIDEADRMLDMGFIP I+ I ++PFTRQTL Sbjct: 124 ADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP RIEV PSSTA+T+ VA + + +K A+L+ L++++ Sbjct: 184 FSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAE 243 Query: 243 DT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + +KN IIFCN+KK+V +L SL++ GFSV A+HG++DQRSR +L NF++G + L+VA Sbjct: 244 EAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFTLV K D K++DAIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIE 363 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID 386 KLI +K++WL+GDLSSL P+E + Sbjct: 364 KLIAEKIEWLSGDLSSLPAPMESFE 388 >gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4] gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4] Length = 516 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 266/438 (60%), Positives = 326/438 (74%), Gaps = 19/438 (4%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 +S KV+ AV DAGY PTPIQ IP L R D+CGIAQTGTGKTASFVLPMLT+LEKGR Sbjct: 1 MSQKVLSAVTDAGYTVPTPIQAGAIPPALMRRDICGIAQTGTGKTASFVLPMLTLLEKGR 60 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127 AR RMPRTLI+EPTRELAAQVA+NFEKYGKN+ L +ALLIGG+ F+ Q++KLERGADVLI Sbjct: 61 ARARMPRTLIMEPTRELAAQVAENFEKYGKNHKLNIALLIGGVSFDEQDRKLERGADVLI 120 Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187 CTPGR+LDH RGKLLM +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL FSATM Sbjct: 121 CTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSATM 180 Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247 E+QK+++ FLQNP+RIEV PSSTA+T+ VA + +K + L+ ++++QD +KN Sbjct: 181 PPEIQKLADKFLQNPERIEVAPPSSTAKTVTQRLVACQNKDYEKRSTLRDIIRAQDDLKN 240 Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307 IIFCN+KK+V +L SLE+ GFSV A+HG++DQRSR +L+ FK+ I L+VASD+AAR Sbjct: 241 AIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTNMLAGFKDNQITLLVASDVAAR 300 Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367 GLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR G+AFTLV K D K++DAIEKLI +K Sbjct: 301 GLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFTLVTKSDAKYLDAIEKLIGEK 360 Query: 368 VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR----------------RKK 411 +WL+GD++SL P E + KN + +G DR R Sbjct: 361 PEWLDGDVASLPPMAEGDRDERRGRGGKN---ARDKSGSDRNGSDRGRGRERSRDGARDG 417 Query: 412 NYSSQKSHIPLKESEKIS 429 + + SH P E+IS Sbjct: 418 DREHRSSHKPDTTEEQIS 435 >gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43] gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43] Length = 509 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 249/372 (66%), Positives = 294/372 (79%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP L+R D+ GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FADLGLSQKVLSAVTDAGYTTPTPIQAGAIPPALERRDILGIAQTGTGKTASFVLPMLTM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+GRAR RMPRTLILEPTRELAAQV +NFEKYGKN+ L + LLIGG+ FE Q +KLERG Sbjct: 64 LERGRARARMPRTLILEPTRELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDH RGKLLM +E+LVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERIVKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+QK+++ FLQNP RIEV PSSTA T+ VA + +K L+ L++SQ Sbjct: 184 FSATMPPEIQKLADKFLQNPARIEVAPPSSTAATVTQKLVACSGKDFEKRERLRDLIRSQ 243 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + N IIFCN+KK+V +L SLEK GFSV A+HG++DQRSR +L FK+ I L+VAS Sbjct: 244 TDLTNAIIFCNRKKDVADLYKSLEKHGFSVGALHGDMDQRSRTNMLQGFKDNEITLLVAS 303 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP V HVFNFDVP AE+Y+HRIGRTGRAGR G AFTLV + D K++DAI K Sbjct: 304 DVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLVNRRDTKYVDAITK 363 Query: 363 LIEKKVDWLNGD 374 LI + ++WL+GD Sbjct: 364 LITRDIEWLDGD 375 >gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo] gi|256159665|ref|ZP_05457418.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella ceti M490/95/1] gi|256254934|ref|ZP_05460470.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella ceti B1/94] gi|260168662|ref|ZP_05755473.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella sp. F5/99] gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti B1/94] gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99] gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M490/95/1] gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo] gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti B1/94] gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99] gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M490/95/1] Length = 435 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 263/453 (58%), Positives = 324/453 (71%), Gaps = 27/453 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D++KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421 +I +K++W +GDLS+L A Q G + R K + Q H Sbjct: 364 SMIGEKIEWHDGDLSTL--------------AVSEEADEQPRKGRNARGKPQTEQHKH-- 407 Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFML 454 ++D ++ +GF ++PAFML Sbjct: 408 ----------RRDRDDDGPAPVGFGNDIPAFML 430 >gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1] Length = 470 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 266/463 (57%), Positives = 329/463 (71%), Gaps = 6/463 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS KV+ AV AGY PTPIQ +TIP VLQR DV GIAQTGTGKTASFVLPMLT+ Sbjct: 8 FDDLGLSEKVIKAVRSAGYTAPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLTL 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF+KYG N+ L V LLIGG+ FE QN+KLE+G Sbjct: 68 LEKGRARARMPRTLILEPTRELAAQVQENFDKYGLNHRLNVVLLIGGVSFEDQNRKLEQG 127 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ EILVIDEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 128 ADVLIATPGRLLDHFERGKLLLIGTEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLF 187 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P +EV SSTA TI V + ++ K A+L++L+ ++ Sbjct: 188 FSATMAPEITKLTEQFLHSPICVEVTKASSTATTITQRLVKSGSKAWDKRAVLRELIDNE 247 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D +KN IIFCN+KK++ L SL K FSV A+HG++DQ SRM L++FK+ + L+VA Sbjct: 248 GDELKNAIIFCNRKKDISELFRSLTKYNFSVGALHGDMDQHSRMNTLADFKDNKLTLLVA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFN+DVP AE+YIHRIGRTGRA R GKAFT+V +D K+I AIE Sbjct: 308 SDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTHDDQKYISAIE 367 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID----IAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQ 416 K+ ++K++WLNGDLS+L+ + D I + A+ P+K T ++ Sbjct: 368 KISKEKIEWLNGDLSTLSISDQTNDSNDSIVKTKSAKLSKKSTPKKHTAHTKKASKEDKT 427 Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459 K +L ++ + LGF ++PAFML K R Sbjct: 428 SHSKTTKNKINSPELSHSEKDQNHTPLGFGADVPAFMLIKTRS 470 >gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC 49188] Length = 498 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/393 (63%), Positives = 308/393 (78%), Gaps = 1/393 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 18 FAELGLSPKVLAAVEAAGYSAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 77 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ F+ Q +KLERG Sbjct: 78 LEKGRARARMPRTLILEPTRELAAQVEENFTKYGVNHRLNVALLIGGVSFDEQERKLERG 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 138 ADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P R+EV SSTA+T+ V + + K A+L+ L++++ Sbjct: 198 FSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSSKKDWDKRAVLRDLVRAE 257 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 DT+KN IIFCN+KK+V L SL + F+ A+HG++DQR+RM +L+NFKEG +QL+VA Sbjct: 258 GDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLANFKEGKLQLLVA 317 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 318 SDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTKYLAAIE 377 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 +I +K++WL+GDLS+L E D + +AR Sbjct: 378 NMIGEKIEWLDGDLSTLPASDEADDPRKSKNAR 410 >gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2] gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2] Length = 482 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 249/377 (66%), Positives = 300/377 (79%), Gaps = 1/377 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 DT+KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSL 378 +I +K++W +GDLS+L Sbjct: 364 SMIGEKIEWHDGDLSTL 380 >gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1] gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1] Length = 482 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 249/377 (66%), Positives = 300/377 (79%), Gaps = 1/377 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 DT+KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSL 378 +I +K++W +GDLS+L Sbjct: 364 SMIGEKIEWHDGDLSTL 380 >gi|254693665|ref|ZP_05155493.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 3 str. Tulya] gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 482 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/377 (65%), Positives = 301/377 (79%), Gaps = 1/377 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ+ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQVGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D++KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSL 378 +I +K++W +GDLS+L Sbjct: 364 SMIGEKIEWHDGDLSTL 380 >gi|114704563|ref|ZP_01437471.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Fulvimarina pelagi HTCC2506] gi|114539348|gb|EAU42468.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Fulvimarina pelagi HTCC2506] Length = 508 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/377 (64%), Positives = 300/377 (79%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGLS KV+ AV GY +PTPIQ + IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FSELGLSAKVLAAVEATGYTQPTPIQAEAIPHALERRDVLGIAQTGTGKTASFVLPMLTM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLI+EPTRELAAQV ++F +YGK L VALLIGG+ FE Q+KKL+RG Sbjct: 64 LEKGRARARMPRTLIIEPTRELAAQVEESFARYGKEQKLNVALLIGGMSFEEQDKKLDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 CDVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLLPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K+++ FLQNP R+EV P+S A T+E VA+ A+ K A L+ LL++ Sbjct: 184 FSATMPPEITKLTQQFLQNPVRVEVAKPASAALTVEQRLVASGAKDYDKRARLRDLLRAN 243 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + N IIFCN+K++V L SLEK GFS A+HG++DQR+RM +L NF+E +QL+VAS Sbjct: 244 EDVTNAIIFCNRKRDVSTLFRSLEKHGFSAGALHGDMDQRARMTMLHNFREDKLQLLVAS 303 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP V HVFNFDVP AE+Y+HRIGRTGRAGR GKAFTLV K + KH+DAI+K Sbjct: 304 DVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSETKHLDAIKK 363 Query: 363 LIEKKVDWLNGDLSSLN 379 LI +++WL+GDLS + Sbjct: 364 LIGTEIEWLDGDLSKVE 380 >gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301] gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301] Length = 484 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 250/393 (63%), Positives = 307/393 (78%), Gaps = 1/393 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVLAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N L VALLIGG+ F+ Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFAKYGINQRLNVALLIGGVSFDDQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P R+EV SSTA+T+ V + + K A+L+ L++++ Sbjct: 184 FSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLRDLIRAE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 DT+KN IIFCN+KK+V L SL + F+ A+HG++DQR+RM +LSNFK+G +QL+VA Sbjct: 244 GDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLSNFKDGKLQLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFD+P +E+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 +I +K++WL+GDLS+L E D + +AR Sbjct: 364 DMIGEKIEWLDGDLSTLPASDEADDPRKGKNAR 396 >gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445] gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445] Length = 482 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D++KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSL 378 +I +K++W +GDLS+L Sbjct: 364 SMIGEKIEWHDGDLSTL 380 >gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330] gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365] gi|254701699|ref|ZP_05163527.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella suis bv. 5 str. 513] gi|254704242|ref|ZP_05166070.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella suis bv. 3 str. 686] gi|256061039|ref|ZP_05451195.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella neotomae 5K33] gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti CCM 4915] gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40] gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026] gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis 1330] gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365] gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti CCM 4915] gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40] gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026] Length = 482 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D++KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSL 378 +I +K++W +GDLS+L Sbjct: 364 SMIGEKIEWHDGDLSTL 380 >gi|254706857|ref|ZP_05168685.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M163/99/10] gi|254710035|ref|ZP_05171846.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis B2/94] gi|254714037|ref|ZP_05175848.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M644/93/1] gi|254716905|ref|ZP_05178716.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M13/05/1] gi|256031530|ref|ZP_05445144.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M292/94/1] gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis B2/94] gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M292/94/1] gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis B2/94] gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 482 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 266/474 (56%), Positives = 333/474 (70%), Gaps = 22/474 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D++KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-HAR----------KNNPI----------P 400 +I +K++W +GDLS+L E + + +AR + P+ P Sbjct: 364 SMIGEKIEWHDGDLSTLAVSEEADEQPRKGRNARGKGKEKPKEKASKPVAAETVDPAGQP 423 Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFML 454 Q R++ S K + K ++D ++ +GF ++PAFML Sbjct: 424 QPVIENQHRREAIRSSNEERRGKPQTEQHKHRRDRDDDGPAPVGFGNDIPAFML 477 >gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str. 16M] gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457] gi|254689182|ref|ZP_05152436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 6 str. 870] gi|256044606|ref|ZP_05447510.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113486|ref|ZP_05454320.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella melitensis bv. 3 str. Ether] gi|256257432|ref|ZP_05462968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 9 str. C68] gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9] gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M] gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 9 str. C68] gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196] gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str. 16M] gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457] gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M] gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 9 str. C68] gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9] gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196] gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28] gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90] Length = 482 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D++KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSL 378 +I +K++W +GDLS+L Sbjct: 364 SMIGEKIEWHDGDLSTL 380 >gi|254719036|ref|ZP_05180847.1| ATP-dependent RNA helicase DDX17 [Brucella sp. 83/13] gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] Length = 482 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D++KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSL 378 +I +K++W +GDLS+L Sbjct: 364 SMIGEKIEWHDGDLSTL 380 >gi|62289879|ref|YP_221672.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str. 9-941] gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308] gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus S19] gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A] gi|254697319|ref|ZP_05159147.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730216|ref|ZP_05188794.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 4 str. 292] gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038] gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus bv. 1 str. 9-941] gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus S19] gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A] gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038] gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] Length = 482 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D++KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSL 378 +I +K++W +GDLS+L Sbjct: 364 SMIGEKIEWHDGDLSTL 380 >gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653] gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653] Length = 482 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG N+ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D++KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTLSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSL 378 +I +K++W +GDLS+L Sbjct: 364 SMIGEKIEWHDGDLSTL 380 >gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840] gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis ATCC 25840] Length = 482 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 247/377 (65%), Positives = 300/377 (79%), Gaps = 1/377 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSPKV+ AV AGY PTPIQ IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF KYG ++ L VALLIGG+ FE Q +KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVEENFVKYGIDHRLNVALLIGGVSFEEQERKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQTL Sbjct: 124 ADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K++E FL +P RIEV SSTA+T+ V + + K A+L+ L+QS+ Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQSE 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D++KN IIFCN+KK+V L SL + F A+HG++DQR+RM +LS+FK+G ++L+VA Sbjct: 244 GDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K++ AIE Sbjct: 304 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTKYLAAIE 363 Query: 362 KLIEKKVDWLNGDLSSL 378 +I +K++W +GDLS+L Sbjct: 364 SMIGEKIEWHDGDLSTL 380 >gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4] gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium chloromethanicum CM4] Length = 519 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/427 (56%), Positives = 316/427 (74%), Gaps = 3/427 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS KV+ AV AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML Sbjct: 1 MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F Q+ KL Sbjct: 61 TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +E+LVIDEADRMLDMGFIP I+ I +VPFTRQT Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++++++ FL NP+R+EV P+STA TIE VAT A+ +K +L+ L++ Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S ++NGIIFCN+K++V L SL GF+ A+HG++DQR+RM L F+ G + L+V Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFNFDVP+ E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 E LI + + WL+GDL+S++ ++++ + R + + G + + S+++S Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKETKGGEEAKSGGRSTERSAA 417 Query: 421 PLKESEK 427 P ES + Sbjct: 418 PSSESPR 424 >gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1] gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1] Length = 519 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/427 (56%), Positives = 316/427 (74%), Gaps = 3/427 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS KV+ AV AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML Sbjct: 1 MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F Q+ KL Sbjct: 61 TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +E+LVIDEADRMLDMGFIP I+ I +VPFTRQT Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++++++ FL NP+R+EV P+STA TIE VAT A+ +K +L+ L++ Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S ++NGIIFCN+K++V L SL GF+ A+HG++DQR+RM L F+ G + L+V Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFNFDVP+ E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 E LI + + WL+GDL+S++ ++++ + R + + G + + S+++S Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKETKGGEETKSGGRSTERSAA 417 Query: 421 PLKESEK 427 P ES + Sbjct: 418 PASESPR 424 >gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium extorquens PA1] gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens PA1] Length = 519 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/427 (56%), Positives = 316/427 (74%), Gaps = 3/427 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS KV+ AV AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML Sbjct: 1 MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F Q+ KL Sbjct: 61 TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +E+LVIDEADRMLDMGFIP I+ I +VPFTRQT Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++++++ FL NP+R+EV P+STA TIE VAT A+ +K +L+ L++ Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S ++NGIIFCN+K++V L SL GF+ A+HG++DQR+RM L F+ G + L+V Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFNFDVP+ E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 E LI + + WL+GDL+S++ ++++ + R + + G + + S+++S Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKETKGGEETKSGGRSTERSAA 417 Query: 421 PLKESEK 427 P ES + Sbjct: 418 PASESPR 424 >gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4] gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4] Length = 517 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/427 (56%), Positives = 316/427 (74%), Gaps = 3/427 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS KV+ AV AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML Sbjct: 1 MSFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F Q+ KL Sbjct: 61 TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +E+LVIDEADRMLDMGFIP I+ I +VPFTRQT Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++++++ FL NP+R+EV P+STA TIE VAT A+ +K +L+ L++ Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S ++NGIIFCN+K++V L SL GF+ A+HG++DQR+RM L F+ G + L+V Sbjct: 241 SASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFNFDVP+ E+Y+HRIGRTGRAGR G+AFTL ++ D + + AI Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 E LI + + WL+GDL+S++ ++++ + R + + G + + S+++S Sbjct: 361 ESLIGQPIAWLDGDLASVS---DEVEGDEPRRRRGSRRAKEAKGGEETKSGGRSTERSAA 417 Query: 421 PLKESEK 427 P ES + Sbjct: 418 PSSESPR 424 >gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1] gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1] Length = 467 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 266/469 (56%), Positives = 337/469 (71%), Gaps = 21/469 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F DLGLS KV+ AV GY PTPIQ TIP VLQR DV GIAQTGTGKTASFVLPMLT Sbjct: 7 NFDDLGLSAKVIKAVKSVGYTVPTPIQSGTIPHVLQRRDVLGIAQTGTGKTASFVLPMLT 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEKGRAR RMPRTLILEPTRELAAQV +NF+KYG N+ L VALLIGG+ FE Q++KLER Sbjct: 67 LLEKGRARARMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEQQDRKLER 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 127 GVDVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPEIERICKLTPFTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+ K+++ FL +P +EV SSTA TI V + + K A+L++L+ + Sbjct: 187 FFSATMAPEITKLTKQFLHSPVTVEVTKASSTASTITQRLVKSGNKAWDKRAVLRELIHN 246 Query: 242 Q-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D +KN IIFCN+K+++ L SL + FSV A+HG++DQ SRM L++FK+ I L+V Sbjct: 247 EGDKLKNAIIFCNRKRDISELLRSLIRHNFSVGALHGDMDQYSRMSTLADFKDNKITLLV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFN+DVP AE+YIHRIGRTGRA R GKAFT+V K D K+I+AI Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKTDQKYINAI 366 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 E++ +K++WL GDLS+L +K DI ++ +P K T +++++ +QKS Sbjct: 367 EEISNEKIEWLTGDLSTLTTTDQKDDII----LKRKSPTSSKKTA--QKERSVHTQKS-- 418 Query: 421 PLKESE---------KISKLQQ--DIQENDADSLGFRGNMPAFMLPKNR 458 LK+ + K++ LQ+ + + GF ++PAFML K R Sbjct: 419 -LKDDKVGYMKATNNKVNLLQKCHSRKNKNHTPSGFGDDIPAFMLIKIR 466 >gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] Length = 501 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 259/499 (51%), Positives = 336/499 (67%), Gaps = 39/499 (7%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS KV+ AV AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML Sbjct: 1 MSFADLGLSDKVLQAVSAAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LE GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VAL+IGG+ F Q+ KL Sbjct: 61 TMLETGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +E+LVIDEADRMLDMGFIP I+ I +VPFTRQT Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++++++ FL NP+R+EV PSSTA TIE VAT A+ +K +L+ L++ Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPSSTATTIEQRLVATGAEGHEKRKILRHLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S D ++NGIIFCN+K++V L SL GF+V A+HG++DQR+R L F+ G + L+V Sbjct: 241 SADELQNGIIFCNRKRDVALLQKSLASHGFNVAALHGDMDQRARTAALDGFRSGEVPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFNFDVP+ E+Y+HRIGRTGRAGR G AFTL ++ D + + AI Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRAGHAFTLASRADERSLAAI 360 Query: 361 EKLIEKKVDWLNGDLSSL------NPPLEKIDIAQHNHARKNN--------------PIP 400 E LI + ++WL+GDLS++ + P + + + K + P Sbjct: 361 ESLIGRPIEWLDGDLSTVTDDTEGDEPRRRRGTRRARGSEKGSERGAEKAAERTAERPSE 420 Query: 401 QKSTGFDRRKKNYS--SQKSHIPLKESEKISKLQQDIQ----------------ENDADS 442 +S G R S + P++E+E +S ++ + E+D Sbjct: 421 SRSRGGRRPASGRSRGEESGREPIREAEPVSPAREPARSAPDRARSERRPPRRDEDDDTP 480 Query: 443 LGFRGNMPAFML-PKNRGK 460 +G ++PAF+L P GK Sbjct: 481 VGLGSHVPAFLLKPTGFGK 499 >gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1] gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1] Length = 477 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 244/380 (64%), Positives = 297/380 (78%), Gaps = 1/380 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGLSPKV+ AV DAGY PTPIQ IP LQ DV GIAQTGTGKTASFVLPML Sbjct: 1 MTFSDLGLSPKVLAAVGDAGYTVPTPIQAGAIPHALQGKDVLGIAQTGTGKTASFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T LE+GRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L +ALLIGG+ F+ Q KKLE Sbjct: 61 TRLERGRARARMPRTLILEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKKLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLI TPGR+LDH RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQT Sbjct: 121 RGADVLIATPGRLLDHHERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ K++E FLQ P R+EV+ P+STA I V + ++ K L+ L++ Sbjct: 181 LFFSATMPPEITKLTEQFLQGPVRVEVSKPASTAVNITQRLVKSGSKPWAKREKLRDLIR 240 Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ D +KN IIFCN+K V L SL + F A+HG++DQR+RM +L NF++G ++L+ Sbjct: 241 AEGDELKNAIIFCNRKTEVATLFRSLVRHEFDAGALHGDMDQRARMMMLENFRKGKLKLL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR GKAFT+V + D K++D Sbjct: 301 VASDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGKAFTIVTRADRKYVDG 360 Query: 360 IEKLIEKKVDWLNGDLSSLN 379 IEKLI + ++WL+GDLS+L Sbjct: 361 IEKLIGQDIEWLDGDLSTLT 380 >gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4] gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4] Length = 471 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/374 (63%), Positives = 299/374 (79%), Gaps = 1/374 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS KV+ AV +GY +PT IQ IP VL+R DV GIAQTGTGKTASF LPML Sbjct: 1 MTFKTLGLSDKVLSAVDASGYTEPTAIQAGAIPHVLERRDVLGIAQTGTGKTASFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV +NFEKYG N+ L VALLIGG+ F Q+KKL+ Sbjct: 61 TLLEKGRARARMPRTLILEPTRELAAQVQENFEKYGTNHKLNVALLIGGVSFGEQDKKLD 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +E+LVIDEADRMLDMGFIP I+ I L+PFTRQT Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLQGVEVLVIDEADRMLDMGFIPDIERICKLIPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q+++E FLQNP R+EV SST+E I H A + +K A+L++LL+ Sbjct: 181 LFFSATMPPEIQRLTETFLQNPARVEVARTSSTSENISHYLRAAEGKDYEKRAVLRELLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + N I+FCN+K+++ L SLE+ G+SV ++HG++DQR+RM +L NFK+GTI+L++ Sbjct: 241 GAEDLNNAIVFCNRKRDISTLFRSLERHGYSVGSLHGDMDQRTRMTMLDNFKKGTIKLLI 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAGR G A+TLV+ D K++++I Sbjct: 301 ASDVAARGLDIPEVSHVFNYDVPSHAEDYVHRIGRTGRAGRTGVAYTLVSGSDQKYLESI 360 Query: 361 EKLIEKKVDWLNGD 374 EKLI + ++WL GD Sbjct: 361 EKLIAQDIEWL-GD 373 >gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Stappia aggregata IAM 12614] gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Stappia aggregata IAM 12614] Length = 505 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/374 (64%), Positives = 297/374 (79%), Gaps = 1/374 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS KV+ AV AGY +PT IQ IP VL+R D+ GIAQTGTGKTASF LPML Sbjct: 25 MAFNTLGLSEKVLAAVEAAGYKEPTAIQSGAIPQVLERRDILGIAQTGTGKTASFTLPML 84 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV +NF +YG N+ L +ALLIGG+ F Q+KKL+ Sbjct: 85 TLLEKGRARARMPRTLILEPTRELAAQVEENFSRYGTNHKLNIALLIGGVSFSEQDKKLD 144 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQT Sbjct: 145 RGTDVLIATPGRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 204 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q+++E FLQNP RIEV SSTAE + AT ++ +K A L+ LL+ Sbjct: 205 LFFSATMPPEIQRLTETFLQNPARIEVAPTSSTAENVAQFLKATDSKDYEKRAALRDLLE 264 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++N I+FCN+K++V + SLE+ ++V A+HG++DQR+RM +L NF++GTI+L+V Sbjct: 265 GAEDLQNAIVFCNRKRDVTTVYRSLERHEYNVGALHGDMDQRTRMMMLDNFRKGTIKLLV 324 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP+ AE+Y+HRIGRTGRAGR G AFTLV ED K++DAI Sbjct: 325 ASDVAARGLDIPEVSHVFNFDVPSNAEDYVHRIGRTGRAGRKGTAFTLVTGEDQKYLDAI 384 Query: 361 EKLIEKKVDWLNGD 374 + LI+K +DWL GD Sbjct: 385 QTLIKKDIDWL-GD 397 >gi|163868127|ref|YP_001609331.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476] gi|161017778|emb|CAK01336.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476] Length = 467 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 262/464 (56%), Positives = 330/464 (71%), Gaps = 13/464 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS KV+ AV AGY PTPIQ +TIP VLQR DV GIAQTGTGKTASFVLPMLT+ Sbjct: 8 FDDLGLSEKVINAVKSAGYTVPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLTL 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRE+AAQV +NF+KYG N+ L VALLIGG+ FE Q++KLERG Sbjct: 68 LEKGRARARMPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLERG 127 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 128 ADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLF 187 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K+++ FL +P +EV SSTA T+ V + + K A+L++L+Q++ Sbjct: 188 FSATMAPEITKLTKQFLHSPVSVEVTKASSTATTVTQRLVKSGNKSWDKRAVLRELIQNE 247 Query: 243 DT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++N IIFCN+K+++ L SL K F+V A+HG++DQ SRM L++FK + L+VA Sbjct: 248 GSKLQNAIIFCNRKRDISELFRSLIKHNFNVGALHGDMDQYSRMNTLADFKNNKLTLLVA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIP V HVFN+DVP AE+YIHRIGRTGRA R GKAFT+V K D K+I+AIE Sbjct: 308 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRLGKAFTIVTKADQKYINAIE 367 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-------NNPIPQKSTGFDRRKKNYS 414 ++ +K++WLNGDLS+L+ + D + + PI K +Y Sbjct: 368 EMSHEKIEWLNGDLSTLSTDDQTEDSVVKKKSSQSSKKKAPKEPIAHPKKTVKENKIDYI 427 Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458 +K EK S+ Q+ + + LGF ++PAFML K R Sbjct: 428 KN-----VKGKEKPSEQQRLRKNRNYAPLGFGDDIPAFMLIKTR 466 >gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans ORS 2060] Length = 465 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 242/378 (64%), Positives = 293/378 (77%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+LGLS KV+ AV AGY PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML Sbjct: 1 MSFAELGLSEKVLQAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T LE+GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VALLIGG+ F Q+ K+ Sbjct: 61 TRLEQGRARARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALLIGGVSFADQDAKIT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q+++++FL NP RIEV P+STA TIE VAT + +K L++L++ Sbjct: 181 LFFSATMPPEIQRLADDFLHNPVRIEVARPASTASTIEQRLVATGGEGHQKRKTLRRLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +KNGIIFCN+K++V L SL GF+V A+HG++DQR+RM L F+ G I L+V Sbjct: 241 GAEELKNGIIFCNRKRDVAQLQKSLANHGFTVAALHGDMDQRARMAALDAFRSGEIPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR+G AFTLVA+ D K + AI Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRNGSAFTLVARGDEKALAAI 360 Query: 361 EKLIEKKVDWLNGDLSSL 378 E LI + + W GDL SL Sbjct: 361 ESLIGQPIPWAEGDLGSL 378 >gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11] gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11] Length = 480 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 255/480 (53%), Positives = 333/480 (69%), Gaps = 23/480 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS KV+ AV AGY PT IQ IP VL+R DV GIAQTGTGKTASF LPML Sbjct: 1 MSFNTLGLSEKVLAAVDAAGYKDPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VALLIGG+ F Q+KKL+ Sbjct: 61 TLLEKGRARARMPRTLILEPTRELAAQVQENFERYGTNHKLNVALLIGGVSFAEQDKKLD 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L+PFTRQT Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q+++E FLQNP RIEV SSTAE + A + K L++LL+ Sbjct: 181 LFFSATMPPEIQRLTETFLQNPARIEVAPTSSTAENVTQQLKAAGGKDYDKRVALRELLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++N I+FCN+K+++ L SLE+ ++V A+HG++DQR+RM +L NF++G I+L+V Sbjct: 241 GAEDLQNAIVFCNRKRDISTLFRSLERHEYNVGALHGDMDQRTRMMMLENFRKGAIKLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFN+DVP AE+Y+HRIGRTGRAGR G A+TLV + D K++ AI Sbjct: 301 ASDVAARGLDIPEVSHVFNYDVPINAEDYVHRIGRTGRAGRSGTAYTLVTESDQKYLRAI 360 Query: 361 EKLIEKKVDWLNGDLS-----------SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409 E+L + ++W+ + + K D + N A ++ P P+K G RR Sbjct: 361 EELTNQSIEWVGESIDFEAAAAERKAKRRSSKTSKADSSNDNDAAQSKPAPKKR-GQSRR 419 Query: 410 KKNYSSQKSHIPLKESEKISKLQQ---------DIQENDADSLGFRGNMPAFMLPKNRGK 460 K + +S P++E+ +++Q+ Q+N+A + ++PAF+L R K Sbjct: 420 KTEEPAPES--PVEETRPTNRVQKISQKPANKPQKQDNNAPAFSEGVHIPAFLLRDPRAK 477 >gi|240850330|ref|YP_002971723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella grahamii as4aup] gi|240267453|gb|ACS51041.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella grahamii as4aup] Length = 467 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 259/463 (55%), Positives = 326/463 (70%), Gaps = 13/463 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS KV+ AV AGY PTPIQ +TIP VLQR DV GIAQTGTGKTASFVLPMLT+ Sbjct: 8 FDDLGLSAKVINAVKSAGYTTPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLTL 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRE+AAQV +NF+KYG N+ L VALLIGG+ FE Q++KLERG Sbjct: 68 LEKGRARARMPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFELQDRKLERG 127 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDH RGKLL+ +EILVIDEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 128 ADVLIATPGRLLDHCERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLF 187 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K+++ FL +P +EV SSTA TI V + ++ K A+L++L+ ++ Sbjct: 188 FSATMAPEITKLTKQFLHSPVSVEVTKASSTATTITQRLVKSGSKSWDKRAVLRELIHNE 247 Query: 243 DT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++N IIFCN+K+++ L SL + FSV A+HG++DQ SRM L++FK+ + L+VA Sbjct: 248 GAELQNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLTLLVA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIP V HVFN+DVP AE+YIHRIGRTGRA R GKAFT+V K D K+I+AIE Sbjct: 308 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQKYINAIE 367 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIA-------QHNHARKNNPIPQKSTGFDRRKKNYS 414 ++ +K++WLNGDLS+L + DI + P+ + K Y Sbjct: 368 EMSNEKIEWLNGDLSTLIADDQTEDIVVKKKSSKSSKKTAQKEPVAHTKKSVEENKTEYI 427 Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457 ++ EK S+ Q+ + + LGF +PAFML K Sbjct: 428 KNANN-----KEKPSEQQRPRKNKNYTPLGFGDEIPAFMLIKT 465 >gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73] gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73] Length = 454 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 255/457 (55%), Positives = 331/457 (72%), Gaps = 12/457 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS KV+ A+ GY PTPIQ TIP +LQ+ DV GIAQTGTGKTASFVLPMLT+ Sbjct: 8 FDNLGLSKKVIKAIKSVGYTTPTPIQSATIPHILQKKDVLGIAQTGTGKTASFVLPMLTL 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR R+PRTLILEPTRELAAQV +N++KYG ++NL VALLIGG+ FE Q++KLERG Sbjct: 68 LEKGRARARIPRTLILEPTRELAAQVKENYDKYGIHHNLNVALLIGGVSFEHQDRKLERG 127 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 AD+LI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 128 ADILIATPGRLLDHFERGKLLLVGVEILVIDEADRMLDMGFIPNIERICKLTPFTRQTLF 187 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ ++++ FL +P +E+ STA+TI V + ++ K A+L++L+ + Sbjct: 188 FSATMAPEITQLTKKFLHSPIYVEITKTFSTAKTITQRLVKSGSKPWDKRAILRELIHKE 247 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D +KN IIFCN+KK++ L SL K FSV A+HG++DQ SR L+NFK+ + L+VA Sbjct: 248 GDELKNAIIFCNRKKDISELFRSLVKHNFSVGALHGDMDQHSRTNTLANFKDNKLTLLVA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIP V HVFN+DVP AE+YIHRIGRTGRA R+GKAFT+V K D K+I+AIE Sbjct: 308 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRNGKAFTIVTKADEKYINAIE 367 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIP 421 ++ ++K++WLNGDLS+L IA H N+ I + R+K K+ Sbjct: 368 EISKEKIEWLNGDLSTL--------IA---HDETNDTISKAKPTKSRQKTAQKEHKTQTK 416 Query: 422 LKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458 ++ S Q+ + ++ +GF ++PAFML KN+ Sbjct: 417 KMLKKQKSSNQRHEKNKNSIPIGFGNDIPAFMLIKNQ 453 >gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [polymorphum gilvum SL003B-26A1] gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum SL003B-26A1] Length = 486 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 264/483 (54%), Positives = 331/483 (68%), Gaps = 23/483 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS KV+ AV AGY +PT IQ IP VL+R DV GIAQTGTGKTASF LPML Sbjct: 1 MSFDSLGLSEKVLSAVKAAGYTEPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV +NFEKYG N+ L VALLIGG+ F Q++K++ Sbjct: 61 TLLEKGRARARMPRTLILEPTRELAAQVEENFEKYGVNHKLNVALLIGGVSFADQDRKID 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLI TPGR+LDH RGKL++ +EILVIDEADRMLDMGFIP I+ I L+PFTRQT Sbjct: 121 RGADVLIATPGRLLDHVERGKLMLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q+++E FLQNP +IEV SSTAE + VA + +K A L++LL Sbjct: 181 LFFSATMPPEIQRLTETFLQNPAKIEVAPRSSTAENVTQYIVAAGSVDFEKRAKLRELLG 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +KN I+FCN+K++V L SLE+ GF+V +HG++DQR+RM+ L +F++GT+ L+V Sbjct: 241 EAEDLKNAIVFCNRKRDVTTLFRSLERHGFNVGCLHGDMDQRTRMQTLESFRKGTLTLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR G ++TLV ED K++ AI Sbjct: 301 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGVSYTLVTGEDSKYLSAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---------HNHARKNNP--IPQKS-TGFDR 408 EKLI K + WL L E+ + + A K P PQKS G R Sbjct: 361 EKLINKSITWLGEPLDFEAAEAERKERRRAGKGTGRTARGGAEKREPGEKPQKSRAGEPR 420 Query: 409 R----------KKNYSSQKSHIPLKESEKISKLQQD-IQENDADSLGFRGNMPAFMLPKN 457 R K+ + S K + S+ ++D E D +G ++PAF+L + Sbjct: 421 RALDKDEGGAPKRERTRASSARDAKPARDRSEPRRDRSHETDEPVIGLGSHVPAFLLREP 480 Query: 458 RGK 460 R K Sbjct: 481 RPK 483 >gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C] Length = 501 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 261/469 (55%), Positives = 337/469 (71%), Gaps = 24/469 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGLS KV+ A+ AGY PTPIQ +TIP +LQ+ DV GIAQTGTGKTASFVLPMLT Sbjct: 39 NFDNLGLSKKVIKAIKSAGYTIPTPIQSRTIPYILQKKDVLGIAQTGTGKTASFVLPMLT 98 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEKGRAR R+PRTLILEPTRELAAQV +NF+KYG N+NL VALLIGG+ FE Q++KLER Sbjct: 99 LLEKGRARARIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLER 158 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GADVLI TPGR+LDHF RGKLL+ +EILVIDEADRML+MGFIP ++ I + PFTRQTL Sbjct: 159 GADVLIATPGRLLDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVTPFTRQTL 218 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+ ++++ FL +P IE+ SSTA+TI V + ++ K A+L++L+Q+ Sbjct: 219 FFSATMAPEITQLTKQFLHSPVYIEITEASSTAKTITQRLVKSESKPCDKKAVLKELIQN 278 Query: 242 Q-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D +KN IIFCN+KK++ L L K FSV +HG++DQ SR L++FK L++ Sbjct: 279 EGDELKNAIIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLI 338 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFN+DVP AE+YIHRIGRTGRA R GKAFT+V K D K+I AI Sbjct: 339 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYICAI 398 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-PQKSTGFDRRKKNYSSQKSH 419 E++ ++K++WLNGDLS+L E ++N K P Q+ T RK +Q Sbjct: 399 EEISKEKIEWLNGDLSTLIAHDE-----ENNTVSKTKPTKSQQKTAQKERK----TQTKK 449 Query: 420 IPLKESEKISKLQ-QDIQENDADS----------LGFRGNMPAFMLPKN 457 IP E EK + ++ +D +E ++ +GF ++PAFML KN Sbjct: 450 IP--EKEKSAYIETKDNKEKSSNKCHEKNKSPIPIGFGADIPAFMLIKN 496 >gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse] gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse] Length = 467 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 264/459 (57%), Positives = 326/459 (71%), Gaps = 3/459 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS KV+ AV AGY PTPIQ TIP VLQR DV GIAQTGTGKTASFVLPMLT+ Sbjct: 8 FDDLGLSEKVIKAVKSAGYTAPTPIQSGTIPYVLQRKDVLGIAQTGTGKTASFVLPMLTL 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQV +NF+KYG N+ L VALLIGG+ FE Q++KLERG Sbjct: 68 LEKGRARARMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLERG 127 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLL+ +EILVIDEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 128 ADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLF 187 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K+++ FL P +EV SSTA TI V + + K A+L++L+ ++ Sbjct: 188 FSATMAPEITKLTKQFLHFPVTVEVTKASSTATTITQQLVKSGNKSWDKRAVLRELIHNE 247 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D +KN IIFCN+K+++ L SL + FSV A+HG++DQ SRM L++FK+ + L+VA Sbjct: 248 GDELKNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLTLLVA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIP V HVFN+DVP AE+YIHRIGRTGRA R GKAFT+V K D K+I AIE Sbjct: 308 SDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQKYISAIE 367 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-NNPIPQKSTGFDRRKKNYSSQKSHI 420 ++ +K++WLNGDLS+L + DI + K + I QK +K + +I Sbjct: 368 EMSNEKIEWLNGDLSTLTTDDQTDDILGKRQSPKLSKKISQKGRAIHTKKPLKDDKVGYI 427 Query: 421 PLKESEKISKLQQDIQENDAD-SLGFRGNMPAFMLPKNR 458 + Q ++N + GF ++PAFML K R Sbjct: 428 KTTNNNANPPEQHHHRKNKSYIPPGFGDDIPAFMLIKMR 466 >gi|260460697|ref|ZP_05808947.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum WSM2075] gi|259033274|gb|EEW34535.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum WSM2075] Length = 525 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/379 (63%), Positives = 296/379 (78%), Gaps = 1/379 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGLSPKV+ AV DAGY +PTPIQ IP L DV GIAQTGTGKTASFVLPML Sbjct: 1 MTFSDLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDVLGIAQTGTGKTASFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T LEKGRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L +ALLIGG+ F+ Q+KKLE Sbjct: 61 TRLEKGRARARMPRTLILEPTRELAAQVEENFIKYGKNHKLNIALLIGGVSFDEQDKKLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLI TPGR+LDH RGKLL+N +EILVIDEADRMLDMGFIP I+ I ++PFTRQT Sbjct: 121 RGADVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ K++E FL P R+EV+ +S A I V + ++ K L+ L++ Sbjct: 181 LFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNIIQRLVKSGSKPWDKRETLRNLIK 240 Query: 241 SQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++D +KN IIFCN+K V L SL K F A+HG++DQR+RM++L+NF++G ++ + Sbjct: 241 AEDAELKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLDIPDV HVFN+DVP AE+Y+HRIGRTGRAGR GK+FT+ K D K+IDA Sbjct: 301 VASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDA 360 Query: 360 IEKLIEKKVDWLNGDLSSL 378 IE+LI K++W +GDLS++ Sbjct: 361 IERLIGTKIEWHDGDLSTV 379 >gi|170742455|ref|YP_001771110.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium sp. 4-46] gi|168196729|gb|ACA18676.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46] Length = 482 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 237/378 (62%), Positives = 290/378 (76%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+LGLS KV+ AV AGY PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML Sbjct: 1 MSFAELGLSEKVLQAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T LE+GRAR RMPRTLILEPTRELAAQV +NFE+YG N+ L VALLIGG+ F Q+ K+ Sbjct: 61 TRLEQGRARARMPRTLILEPTRELAAQVVENFERYGTNHKLNVALLIGGVSFADQDAKIT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q+++++FL NP RIEV P+STA TI VAT + +K L+ L++ Sbjct: 181 LFFSATMPPEIQRLADDFLHNPVRIEVARPASTASTIAQRLVATGGEGHEKRKTLRGLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++NG+IFCN+K++V L SL GF+V A+HG++DQR+RM L F+ G + L+V Sbjct: 241 GAVELRNGLIFCNRKRDVAQLQRSLANHGFNVAALHGDMDQRARMAALDAFRSGEVPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G AFTLV + D K + AI Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRSGAAFTLVGRGDEKALAAI 360 Query: 361 EKLIEKKVDWLNGDLSSL 378 E LI + + W +GDL+SL Sbjct: 361 ESLIGQPIPWADGDLASL 378 >gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella bacilliformis KC583] gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain protein [Bartonella bacilliformis KC583] Length = 462 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 256/460 (55%), Positives = 326/460 (70%), Gaps = 6/460 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGLS KV+ AV AGY PTPIQ +TIP VLQ DV GIAQTGTGKTASFVLPMLT Sbjct: 7 NFDNLGLSAKVIKAVQLAGYTAPTPIQSETIPHVLQHKDVLGIAQTGTGKTASFVLPMLT 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEKGRA+ RMPRTLILEPTRELAAQV +NF+KYG N+ L VALLIGG+ F+ Q++KLER Sbjct: 67 LLEKGRAKARMPRTLILEPTRELAAQVKENFDKYGINHRLNVALLIGGVSFDHQDRKLER 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GADVLI TPGR+LDHF RG LL+ +EILVIDEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 127 GADVLIATPGRLLDHFERGTLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+ K++E FL +P +E+ SSTA TI V + ++ K A+L++L+ Sbjct: 187 FFSATMAPEIIKLTEQFLHSPVCVEITKESSTARTITQRLVKSGSKAWHKRAVLRKLIHD 246 Query: 242 QD-TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ +KN I+FCN+KK++ L SL K FSV +HG++DQ SRM L++FKE + L+V Sbjct: 247 ENKELKNAIVFCNRKKDISELFRSLVKYNFSVGVLHGDMDQHSRMNTLADFKENKLTLLV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIPDV HVFN+DVP AE+YIHRIGRTGRA R GKAFT+V K D K+I AI Sbjct: 307 ASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKNDQKYISAI 366 Query: 361 EKLIEKKVDWLNGDLSSL-NPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 EK+ ++ ++WL+GDLS+L N + I + + I + + + +K++ Sbjct: 367 EKISKENIEWLDGDLSTLINDEVNDISLKTKSTKSPKKNIQKNAIKMPKDNAEICVKKTN 426 Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRG 459 S+K +E + L F ++PAFML K R Sbjct: 427 NKATSSDK----HHSQKEKTSPILAFGADIPAFMLVKTRS 462 >gi|13470499|ref|NP_102068.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099] gi|14021241|dbj|BAB47854.1| probable ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099] Length = 527 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 238/379 (62%), Positives = 295/379 (77%), Gaps = 1/379 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DLGLSPKV+ AV DAGY PTPIQ IP L D+ GIAQTGTGKTASFVLPML Sbjct: 12 LTFSDLGLSPKVLSAVTDAGYTVPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPML 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T LEKGRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L +ALLIGG+ F+ Q+KKLE Sbjct: 72 TRLEKGRARARMPRTLILEPTRELAAQVEENFVKYGKNHKLNIALLIGGVSFDEQDKKLE 131 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLI TPGR+LDH RGKLL+N +EILVIDEADRMLDMGFIP I+ I ++PFTRQT Sbjct: 132 RGADVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQT 191 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ K++E FL P R+EV+ +S A I V + ++ K L+ L++ Sbjct: 192 LFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIK 251 Query: 241 SQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++D +KN IIFCN+K V L SL K F A+HG++DQR+RM++L+NF++G ++ + Sbjct: 252 AEDAELKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYL 311 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLDIPDV HVFN+DVP AE+Y+HRIGRTGRAGR GK+FT+ K D K+IDA Sbjct: 312 VASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDA 371 Query: 360 IEKLIEKKVDWLNGDLSSL 378 IE+LI K++W +GDLS++ Sbjct: 372 IERLIGNKIEWHDGDLSTV 390 >gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498] Length = 466 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 256/458 (55%), Positives = 333/458 (72%), Gaps = 2/458 (0%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGLS KV+ A+ AGY PTPIQ +TIP +LQ+ DV GIAQTGTGKTASFVLPMLT Sbjct: 7 NFDNLGLSKKVIKAIKSAGYTIPTPIQSRTIPHILQKKDVLGIAQTGTGKTASFVLPMLT 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEKGRAR R+PRTLILEPTRELAAQV +NF+KYG N+NL VALLIGG+ FE Q++KLER Sbjct: 67 LLEKGRARARIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLER 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GADVLI TPGR+LDHF RGKLL+ +EILVIDEADRML+MGFIP ++ I + PFTRQTL Sbjct: 127 GADVLIATPGRLLDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVTPFTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+ ++++ FL +P IE+ SSTA+TI V + ++ K A+L++L+Q+ Sbjct: 187 FFSATMAPEIAQLTKQFLHSPVYIEITEASSTAKTITQRLVKSGSKSCDKKAVLKELIQN 246 Query: 242 Q-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D +KN IIFCN+KK++ L L K FSV +HG++DQ SR L++FK L++ Sbjct: 247 EGDELKNAIIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLI 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFN+DVP AE+YIHRIGRTGRA R GKAFT+V K D K+I AI Sbjct: 307 ASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYIRAI 366 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS-H 419 E++ ++K++WLNGDLS+L E+ D K+ + + KK +KS + Sbjct: 367 EEISKEKIEWLNGDLSTLIAHDEENDTVSKTKPTKSQQKTAQKKRKTQTKKILEKEKSAY 426 Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457 I K++++ S + + N +GF ++PAFML KN Sbjct: 427 IETKDNKEKSSNKCHEKNNSPIPIGFGDDIPAFMLIKN 464 >gi|319783267|ref|YP_004142743.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169155|gb|ADV12693.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 520 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 238/379 (62%), Positives = 294/379 (77%), Gaps = 1/379 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLSPKV+ AV DAGY +PTPIQ IP L D+ GIAQTGTGKTASFVLPML Sbjct: 1 MTFADLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T LE GRAR RMPRTLILEPTRELAAQV +NF +YGKN+ L +ALLIGG+ F+ QNKKLE Sbjct: 61 TRLENGRARARMPRTLILEPTRELAAQVEENFIRYGKNHKLNIALLIGGVSFDEQNKKLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RGKLL+N +EILVIDEADRMLDMGFIP I+ I ++PFTRQT Sbjct: 121 RGVDVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ K++E FL P R+EV+ +S A I V + ++ K L+ L++ Sbjct: 181 LFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIK 240 Query: 241 SQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++D +KN IIFCN+K V L SL K F A+HG++DQR+RM++L+NF++G ++ + Sbjct: 241 AEDAELKNAIIFCNRKIEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLDIPDV HVFN+DVP AE+Y+HRIGRTGRAGR GK+FT+ K D K+IDA Sbjct: 301 VASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDA 360 Query: 360 IEKLIEKKVDWLNGDLSSL 378 IE+LI K++W +GDLS++ Sbjct: 361 IERLIGNKIEWHDGDLSTV 379 >gi|170747431|ref|YP_001753691.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170653953|gb|ACB23008.1| DEAD/DEAH box helicase domain protein [Methylobacterium radiotolerans JCM 2831] Length = 527 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 233/378 (61%), Positives = 290/378 (76%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGLS KV+ AV AGY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPML Sbjct: 1 MPFSDLGLSEKVLNAVEAAGYTEPTPIQAEAIPHVLARRDVLGIAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LE GRAR RMPRTLILEPTRELAAQV +NF++YG N+ L VAL+IGG+ F Q+ KL Sbjct: 61 TLLENGRARARMPRTLILEPTRELAAQVVENFDRYGTNHKLNVALIIGGVSFADQDAKLM 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDHF RGKLL+ +E+LVIDEADRMLDMGFIP I+ I +VPFTRQT Sbjct: 121 RGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++++++ FL NP+R+EV P+STA TI VAT A+ K L+ L++ Sbjct: 181 LFFSATMPPEIERLADMFLHNPQRVEVARPASTATTITQRLVATGAEGHAKRERLRGLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ +KNGIIFCN+K++V L SL GF A+HG++DQR+R L F+ G L+V Sbjct: 241 GEEDLKNGIIFCNRKRDVALLQKSLVSHGFDAAALHGDMDQRARTTALDGFRNGETALLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFNFDVP+ E+Y+HRIGRTGRAGR G A+TLVA +D + + AI Sbjct: 301 ASDVAARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGTAYTLVAPDDARSLGAI 360 Query: 361 EKLIEKKVDWLNGDLSSL 378 E LI + + WL+GDL+S+ Sbjct: 361 EALIGQPIPWLDGDLTSV 378 >gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3] Length = 465 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 259/457 (56%), Positives = 330/457 (72%), Gaps = 5/457 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS KV+ A+ AGY PTPIQ TIP +LQ+ D+ GIAQTGTGKTASFVLPMLT+ Sbjct: 8 FDNLGLSKKVINAIKSAGYTIPTPIQSGTIPHILQKRDILGIAQTGTGKTASFVLPMLTL 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR R+PRTLILEPTRELA QV +NF+KYG N+NL VALLIGG+ FE Q++KLERG Sbjct: 68 LEKGRARARIPRTLILEPTRELATQVQENFDKYGVNHNLNVALLIGGVSFEQQDRKLERG 127 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF GKLL+ IEILVIDEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 128 ADVLIATPGRLLDHFEHGKLLLLGIEILVIDEADRMLDMGFIPNIERICKLTPFTRQTLF 187 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ K+++ FL +P IE+ SSTA+ I V + ++ K A+L++L+ + Sbjct: 188 FSATMAPEITKLTKQFLHSPVYIEITKASSTAKKITQRLVKSGSKPWDKRAILRELIHKE 247 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D +KN IIFCN+KK++ L SL K FSV +HG++DQ SR L+NFK+ + L+VA Sbjct: 248 GDELKNAIIFCNRKKDISELVRSLIKHNFSVGTLHGDMDQHSRTSTLANFKDNKLTLLVA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+A+RGLDIP V HVFN+DVP AE+YIHRIGRTGRA R GKAFT+V K D K+I AIE Sbjct: 308 SDVASRGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEKYISAIE 367 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 ++ ++K++WLNGDLS+L E D +AQ AR QK +K + +++ Sbjct: 368 EISQEKIEWLNGDLSTLIDYDETNDTVAQTKVARLQQKTAQKKHKTQTKKILEKEKLAYV 427 Query: 421 PLKES-EKISKLQQDIQENDADSLGFRGNMPAFMLPK 456 K++ E++S Q ++ +GF ++PAFML K Sbjct: 428 KTKDNKEELS--NQCHEKKTPIPIGFGNDIPAFMLIK 462 >gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062] gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062] Length = 476 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 237/428 (55%), Positives = 315/428 (73%), Gaps = 10/428 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS KV+ AV +GY +PT IQ IP VL+R DV GIAQTGTGKTASF LPM+ Sbjct: 1 MSFSTLGLSEKVLAAVEASGYTEPTAIQAGAIPYVLERRDVLGIAQTGTGKTASFTLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV DNF +YG N+ L VALLIGG+ F Q++KLE Sbjct: 61 TLLEKGRARARMPRTLILEPTRELAAQVEDNFNRYGVNHKLNVALLIGGVSFAEQDRKLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLI TPGR+LDHF RGKLL+ ++ILVIDEADRMLDMGFIP I+ I L+PFTRQT Sbjct: 121 RGADVLIATPGRLLDHFERGKLLLQGVDILVIDEADRMLDMGFIPDIERICKLIPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q++++ FLQNP ++EV S+TAET+ A + +K A L++L++ Sbjct: 181 LFFSATMPSEIQRLTDTFLQNPAKVEVAKASTTAETVTQRIAAAEPEDYEKRAKLRELIE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++N I+FCN+K++V L SL + FSV A+HG++DQRSRM +L NFK+G I+++V Sbjct: 241 GAEDLQNAIVFCNRKRDVATLFRSLVRHEFSVGALHGDMDQRSRMTMLDNFKKGNIKILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFNFD+P +AE+Y+HRIGRTGRAGR G A ++V +D K + AI Sbjct: 301 ASDVAARGLDIPSVSHVFNFDLPIQAEDYVHRIGRTGRAGRDGTAISIVTGKDEKALQAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 + I K+++W+ G+ + P+E+ +R+ + QK R+ K ++ Sbjct: 361 NETIGKELEWV-GEPVDFSAPVEE------KKSRRRSTRGQKDKNRSRKSK---AEAQEA 410 Query: 421 PLKESEKI 428 P++E++ + Sbjct: 411 PVQEADSV 418 >gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506] gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506] Length = 499 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/412 (58%), Positives = 295/412 (71%), Gaps = 7/412 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS KV+ AV DAGY +PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML Sbjct: 1 MPFNELGLSDKVLSAVADAGYTEPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LE+GRAR RMPRTLILEPTRELAAQV +NF KYGKN+ L VALLIGG+ F Q+ KL Sbjct: 61 TMLEQGRARARMPRTLILEPTRELAAQVEENFTKYGKNHKLNVALLIGGVSFGDQDAKLL 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG+LL++ IEILVIDEADRMLDMGFIP I+ + LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHVERGRLLLSGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q++ FL NP ++E + PSSTA I VA + K L++L+ Sbjct: 181 LFFSATMPPEIQRLVAQFLSNPVQVEASRPSSTAANITQFLVACGKEDFAKRETLRELIN 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S D ++NGIIFCN+K V + SL++ GF+V A+HG++DQRSRM+ L F+ G L+V Sbjct: 241 SADNLQNGIIFCNRKSEVAVVHKSLKRHGFNVVALHGDMDQRSRMQALDQFRTGEANLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFN+D P+ AE+Y+HRIGRTGRAGR G AFTLV D K + AI Sbjct: 301 ASDVAARGLDIPAVSHVFNYDTPHHAEDYVHRIGRTGRAGRSGAAFTLVTPADTKSLAAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 EKLI + +DW G PP E R++ P + G +R +K Sbjct: 361 EKLIGRSIDWREGSSLDALPPSEA-------RPRRDRPERGERKGGERGRKG 405 >gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus Py2] Length = 537 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 229/380 (60%), Positives = 287/380 (75%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS KV+ AV D GY +PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML Sbjct: 1 MSFSELGLSEKVLAAVADTGYTQPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LE GRAR RMPRTLILEPTRELAAQV +NF +YGKN+ L VALLIGG+ F Q+ KL Sbjct: 61 TLLEHGRARARMPRTLILEPTRELAAQVEENFTRYGKNHKLNVALLIGGVSFGDQDSKLL 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG+LL++ IE+LVIDEADRMLDMGFIP I+ + LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q++ FL NP R+EV+ P+STA T+ H VA+ + K +L++L++ Sbjct: 181 LFFSATMPPEIQRLVSQFLSNPVRVEVSKPASTAATVTHMLVASGREDYDKREVLRELIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D ++NGIIFCN+K++V L SL+K GF+ A+HG++DQ +R+K L F+ G L+V Sbjct: 241 NCDGLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDQFRSGEATLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFN+DVP+ +E+Y+HR+GRTGRAGR G A+TLV D K + AI Sbjct: 301 ASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRVGRTGRAGRAGTAYTLVTHTDAKSVTAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNP 380 EKLI V W L P Sbjct: 361 EKLIGNAVPWHGAPLGDAPP 380 >gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium OB3b] gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium OB3b] Length = 419 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 240/383 (62%), Positives = 285/383 (74%), Gaps = 2/383 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS KV+ AV +GY +PTPIQ + IP LQ D+ GIAQTGTGKTA+FVLPML Sbjct: 1 MTFDELGLSQKVLAAVETSGYTQPTPIQEQAIPPALQGRDILGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE+GRAR RMPRTLILEPTRELAAQV +F KYG N+ L VALLIGG+ F Q K+ Sbjct: 61 CRLEQGRARARMPRTLILEPTRELAAQVEASFAKYGANHKLNVALLIGGMAFGDQEAKIM 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLI TPGR+LD F+RGKLL+ NIEILVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGADVLIATPGRLLDFFDRGKLLLTNIEILVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ +++E FL NP RIEV SSTA TI VAT+ +++K L++LL+ Sbjct: 181 LFFSATMPPEITRLTEAFLHNPVRIEVARASSTAATIRQALVATHG-HAEKRETLRRLLR 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + KN IIFCN+K++V L SL+K GFS A+HG++DQ +RM L FK G + L+V Sbjct: 240 GAENFKNAIIFCNRKRDVAILHRSLDKHGFSAGALHGDMDQPARMASLDAFKNGDVALLV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 SD+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G A TLV ED K++D I Sbjct: 300 CSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGTAVTLVTGEDRKYLDQI 359 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383 E LI K+DW L L PP E Sbjct: 360 ETLIGNKIDWEGPRLDEL-PPAE 381 >gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] Length = 472 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 244/476 (51%), Positives = 314/476 (65%), Gaps = 21/476 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS KV+ AV GY PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLDRRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV +NF++YG L VALLIGG+ F Q+ KL Sbjct: 61 TLLEKGRARARMPRTLILEPTRELAAQVKENFDRYGVGQKLNVALLIGGVSFGDQDAKLG 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RGKLLM +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM E+++++E FL NP ++EV+ P+STA T+ ++T + +K LL+QLL+ Sbjct: 181 LFFTATMPAEIRRITETFLHNPVKVEVSKPASTAVTVTQFQISTGKESHEKRELLRQLLR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +KN IIFCN+K+ V L SL+K GF A+HG++DQ +RM L F++G + L+V Sbjct: 241 DAKDLKNAIIFCNRKREVAILHKSLQKHGFGAAALHGDMDQSARMAALEQFRKGELPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP+ ++Y+HRIGRTGRAGR G A ++V+ D K I AI Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRLGTAISIVSPLDQKSILAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS-- 418 EKLI + + G + +E + +N P P+KS +R K+ +K+ Sbjct: 361 EKLIGQSIPHAEGHARTAAASVEADAVIA-----ENGPAPRKSRRGGQRSKHRDREKTSA 415 Query: 419 --------------HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460 P + +L D G ++PAF+L R + Sbjct: 416 KPAAKPAPSPKSSARTPAAPPPSLGRLPMAAATQDHVEPGDHSHLPAFLLRPVRAR 471 >gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 484 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 247/470 (52%), Positives = 315/470 (67%), Gaps = 23/470 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS KV+ AV GY PTPIQ + IP L D+ GIAQTGTGKTA+F LPML Sbjct: 1 MTFNELGLSEKVLQAVAATGYTSPTPIQAEAIPHALAGRDILGIAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + LE+GRAR RMPRTLILEPTRELAAQV ++F +YG N+ L VALLIGG+ F Q K+ Sbjct: 61 SRLEQGRARARMPRTLILEPTRELAAQVEESFARYGINHKLNVALLIGGVSFAEQENKIM 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLI TPGR+LD RGKLL+ IEILVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGADVLIATPGRLLDFSERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ +++E FL NP RIEV SSTA TI VA+ A K L+QL++ Sbjct: 181 LFFSATMPPEITRLTETFLHNPVRIEVARASSTATTITQGLVAS-AHGPAKRETLRQLIR 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +KN IIFCN+K++V L SL+K GFS A+HG++DQR+RM L FK G + L+V Sbjct: 240 GAENLKNAIIFCNRKRDVAVLHKSLQKHGFSAGALHGDMDQRARMTSLDAFKSGDVNLLV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 SD+AARGLDIPDV HVFNFDVP AE+Y+HRIGRTGRAGR G A ++V D K++D I Sbjct: 300 CSDVAARGLDIPDVSHVFNFDVPTHAEDYVHRIGRTGRAGRSGVALSIVTSADRKYVDEI 359 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN-------NPIPQKSTGFDRRKKNY 413 EKLI +K+DW G ++L+ + +A R+ P PQ+ + R Sbjct: 360 EKLIARKIDWQGG--ATLDDVAAEESVAHATETRRGRGGKIAKRPAPQE----EARPSQA 413 Query: 414 SSQ--KSHIPLKESEKIS-------KLQQDIQENDADSLGFRGNMPAFML 454 +++ KS P++E + ++ +++D +G ++P F+L Sbjct: 414 AARGPKSRRPVEEGRSDGRKPSNPPRSRRSYEDDDVPVVGLGDHVPMFLL 463 >gi|148255365|ref|YP_001239950.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1] gi|146407538|gb|ABQ36044.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1] Length = 478 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/374 (60%), Positives = 285/374 (76%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS KV+ AV GY PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 TILEKGRAR RMPRTLILEPTRELAAQV +NF++YG L VALLIGG+ F Q+ KL Sbjct: 61 TILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDTKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM E+++V+E FL NP+++EV+ P++TA T+ V + +K +L++LL+ Sbjct: 181 LFFTATMPPEIRRVTETFLHNPQKVEVSRPATTAVTVTQLQVPGGREAHQKREVLRKLLR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +KN IIFCN+K++V L SL+K GFSVCA+HG++DQ +RM L F++G + L+V Sbjct: 241 EAKDLKNAIIFCNRKRDVAILHKSLQKHGFSVCALHGDMDQSARMAALDQFRKGELPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP+ +++Y+HRIGRTGRAGR G A ++V+ D K I AI Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPADQKSITAI 360 Query: 361 EKLIEKKVDWLNGD 374 EKLI + + GD Sbjct: 361 EKLIGQSIPKAEGD 374 >gi|158424139|ref|YP_001525431.1| helicase [Azorhizobium caulinodans ORS 571] gi|158331028|dbj|BAF88513.1| helicase [Azorhizobium caulinodans ORS 571] Length = 582 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 225/384 (58%), Positives = 285/384 (74%), Gaps = 1/384 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS KV+ AV GY PTPIQ + IP VL R DV G+AQTGTGKTA+F LPML Sbjct: 64 MSFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 123 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LE+GRAR RMPRTLILEPTRELAAQV +NF +YGKN+ L VALLIGG+ F Q+ KL Sbjct: 124 TLLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDTKLL 183 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG+LL++ IE+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 184 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQT 243 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q++ FL NP R+EV+ P+S +I VA+ + +K L++L++ Sbjct: 244 LFFSATMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELIR 303 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D ++NGI+FCN+K++V + SL+K GF+V +HG++DQ +R + L F+ G L+V Sbjct: 304 NADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLLV 363 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFN+DVP+ +E+Y+HRIGRTGRAGR G A LV +D K + AI Sbjct: 364 ASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAAI 423 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 EKLI + W G+ PP EK Sbjct: 424 EKLIGNAIPW-QGEPLGEAPPREK 446 >gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC 49242] gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC 49242] Length = 496 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 226/383 (59%), Positives = 281/383 (73%), Gaps = 1/383 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS KV+ AV +GY PTPIQ + IP LQ D+ GIAQTGTGKTA+F LPML Sbjct: 1 MTFDELGLSQKVLAAVQASGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + LE+GRAR R+PRTLILEPTRELAAQV ++F KYG N+ L VALLIGG+ F Q K+ Sbjct: 61 SRLEQGRARARVPRTLILEPTRELAAQVEESFAKYGANHKLNVALLIGGVSFGDQEAKIM 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLI TPGR+LD F+RGKLL+ IEILVIDEADRMLDMGFIP I+ + LVPFTRQT Sbjct: 121 RGADVLIATPGRLLDFFDRGKLLLTGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ +++E FL NP RIEV S+TA TI VA+ K+ L+ L++ Sbjct: 181 LFFSATMPPEITRLTEAFLHNPIRIEVARASTTASTIRQALVASRGHADKR-ETLRNLIR 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +KN I+FCN+K++V L SL K GF A+HG++DQ +RM L FK G + ++V Sbjct: 240 GAENLKNAIVFCNRKRDVAILHRSLVKHGFPAGALHGDMDQLARMASLDAFKNGDVAILV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 SD+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G A T+V ++D K+ID I Sbjct: 300 CSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGVAMTIVTEDDTKYIDQI 359 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383 + LI K ++W +L PP+E Sbjct: 360 QSLIGKAIEWEGPGFDALPPPME 382 >gi|146340507|ref|YP_001205555.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278] gi|146193313|emb|CAL77329.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278] Length = 476 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 222/374 (59%), Positives = 286/374 (76%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS KV+ AV GY PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 TILEKGRAR RMPRTLILEPTRELAAQV +NF++YG L VALLIGG+ F Q+ KL Sbjct: 61 TILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM E++++++ FL NP+++EV+ P++TA T+ V + + +K +L++LL+ Sbjct: 181 LFFTATMPPEIRRITDAFLHNPQKVEVSKPATTAVTVTQLQVPSGREAHQKREVLRRLLR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +KN IIFCN+K++V + SL+K GFSV A+HG++DQ +RM L F++G + L+V Sbjct: 241 EAKDLKNAIIFCNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARMAALDQFRKGELPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP+ +++Y+HRIGRTGRAGR G A ++V+ D K + AI Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPPDQKSVAAI 360 Query: 361 EKLIEKKVDWLNGD 374 EKLI + + + GD Sbjct: 361 EKLIGQSIPTIEGD 374 >gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris BisA53] Length = 517 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 235/426 (55%), Positives = 296/426 (69%), Gaps = 5/426 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS KV+ AV +GY PTPIQ + IP V+ R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFTHLGLSDKVLAAVAASGYTTPTPIQDQAIPHVMARRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG L VALLIGG+ F Q+ KL Sbjct: 61 TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM E+++++E FL NP +IEV+ P+STA T+ VA + +K L+QLL+ Sbjct: 181 LFFTATMPTEIRRITEAFLHNPVKIEVSKPASTAVTVTQSQVAAGREPHQKRETLRQLLR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++N IIFCN+K+ V L SL K GFSV A+HG++DQ +R L F++G + L+V Sbjct: 241 EASDLQNAIIFCNRKREVALLAKSLLKHGFSVGALHGDMDQSARTAALEAFRKGELPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP+ ++Y+HRIGRTGRAGR G A TLVA D K + AI Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTAVTLVAPPDGKSVAAI 360 Query: 361 EKLIEKKVDWLN-GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 EKLI +++ + GD PP +++ + AR+ + R + ++ Sbjct: 361 EKLIGQEIPRVQLGD----APPETEVEGEREAPARRGRGSRKSGESRPRTEGRAPRAEAR 416 Query: 420 IPLKES 425 P ES Sbjct: 417 TPRGES 422 >gi|316934368|ref|YP_004109350.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315602082|gb|ADU44617.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris DX-1] Length = 469 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/368 (60%), Positives = 277/368 (75%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS KV AV AGYV PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFTNLGLSTKVQAAVAAAGYVSPTPIQQQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG L VALLIGG+ F Q+ KL Sbjct: 61 TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM E+++++E FL NP++IEV+ P+STA T+ V + +K L+ L++ Sbjct: 181 LFFTATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRHLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +KN IIFCN+K+ V L SL++ GFSV A+HG++DQ +RM L F++G + ++V Sbjct: 241 GATDLKNAIIFCNRKREVALLARSLQRHGFSVGALHGDMDQTARMAALEAFRKGELPILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP+ ++Y+HRIGRTGRAGR G A T+VA D K + AI Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTALTIVAPSDQKSMAAI 360 Query: 361 EKLIEKKV 368 EKLI + + Sbjct: 361 EKLIGQDI 368 >gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5] gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5] Length = 500 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/368 (60%), Positives = 281/368 (76%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS KV+ AV +GY PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFSNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG LTVALLIGG+ F Q+ KL Sbjct: 61 TMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLTVALLIGGVSFGDQDVKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+LVIDEADRMLDMGFIP I+ + LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERVCKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM E+++++E FL NP++IEV+ P+STA T+ V + +K L++L++ Sbjct: 181 LFFTATMPPEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++N IIFCN+K+ V L SL+K GFSV A+HG++DQ +R L F++G + ++V Sbjct: 241 AATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP+ ++Y+HR+GRTGRAGR G A ++VA D K I AI Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQKSIAAI 360 Query: 361 EKLIEKKV 368 EKLI K++ Sbjct: 361 EKLIGKEI 368 >gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2] gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2] Length = 516 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/372 (59%), Positives = 281/372 (75%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS KV+ AV +GY PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFNNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG L VALLIGG+ F Q+ KL Sbjct: 61 TMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+L+IDEADRMLDMGFIP I+ + LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERVCKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM E+++V+E FL NP++IEV+ P+STA T+ VA + +K L+ L++ Sbjct: 181 LFFTATMPPEIRRVTETFLHNPEKIEVSKPASTAVTVAQSQVACGREPHEKRETLRSLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++N IIFCN+K+ V L SL+K GFSV A+HG++DQ +R L F++G + ++V Sbjct: 241 AATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP+ ++Y+HR+GRTGRAGR G A ++VA D K I AI Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQKSIAAI 360 Query: 361 EKLIEKKVDWLN 372 EKLI K++ ++ Sbjct: 361 EKLIGKEIPRVD 372 >gi|217977138|ref|YP_002361285.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2] gi|217502514|gb|ACK49923.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2] Length = 494 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/373 (60%), Positives = 275/373 (73%), Gaps = 1/373 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS KV+ AV +GY PTPIQ + IP L DV GIAQTGTGKTA+F LPML Sbjct: 1 MTFEELGLSAKVLQAVEASGYTTPTPIQAQAIPFALTGRDVLGIAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + LE+GRAR RMPRTLILEPTRELAAQV ++F +YG N+ + VALLIGG+ F Q K+ Sbjct: 61 SRLEQGRARARMPRTLILEPTRELAAQVEESFVRYGVNHKVNVALLIGGVSFADQEAKIT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLI TPGR+LD RGKLL+ IEILVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGADVLIATPGRLLDFAERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ +++E FL NP R+EV SSTA TI +A+ +K+ L++LL+ Sbjct: 181 LFFSATMPPEITRLTETFLHNPARVEVARASSTATTITQGLIASAPGPAKR-ETLRRLLR 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S KN IIFCN+K++V L SL GF+ A+HG++DQR+RM L FK G + L+V Sbjct: 240 SAADFKNAIIFCNRKRDVALLHKSLLTHGFNAGALHGDLDQRARMASLDAFKTGEVALIV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 SD+AARGLDIPDV HV NFDVP AE+Y+HRIGRTGRAG+ G A T+V K D KHI I Sbjct: 300 CSDVAARGLDIPDVSHVLNFDVPTHAEDYVHRIGRTGRAGKSGVAITIVTKADQKHIAEI 359 Query: 361 EKLIEKKVDWLNG 373 EKLI + +D+L+G Sbjct: 360 EKLIGRSIDFLDG 372 >gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009] gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009] gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] Length = 472 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/368 (60%), Positives = 278/368 (75%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS KV AV AGYV PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFSNLGLSEKVQAAVAAAGYVSPTPIQQQAIPHVLARKDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG L VALLIGG+ F Q+ KL Sbjct: 61 TMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+L+IDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM E+++++E FL NP++IEV+ P+STA T+ V + +K L++L++ Sbjct: 181 LFFTATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +KN IIFCN+K+ V L SL++ GFSV A+HG++DQ +R L F++G + ++V Sbjct: 241 GATDLKNAIIFCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP+ ++Y+HRIGRTGRAGR G A T+VA D K + A+ Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAVTIVAPSDQKSMAAV 360 Query: 361 EKLIEKKV 368 EKLI + + Sbjct: 361 EKLIGQAI 368 >gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] Length = 482 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/368 (60%), Positives = 277/368 (75%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS KV+ AV AGY PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFSHLGLSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG L VALLIGG+ F Q+ KL Sbjct: 61 TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM +E+++V++ FL NP+RIEV+ P++TA T+ V+ + +K LL+ LL+ Sbjct: 181 LFFTATMPNEIRRVTDAFLHNPQRIEVSRPATTAATVTQSQVSCSREPHEKRELLRHLLR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +KN IIFCN+K++V + SL+K GFSV A+HG++DQ +R L F++G + L+V Sbjct: 241 EAKELKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HV NFDVP+ ++Y+HRIGRTGRAGR G A T+V D K + AI Sbjct: 301 ASDVAARGLDIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIVCPADFKSLAAI 360 Query: 361 EKLIEKKV 368 EKL + + Sbjct: 361 EKLTGQPI 368 >gi|90424330|ref|YP_532700.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] gi|90106344|gb|ABD88381.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] Length = 503 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/368 (60%), Positives = 275/368 (74%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS KV+ AV GY PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 8 MSFTHLGLSDKVLAAVAATGYTTPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 67 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG L VALLIGG+ F Q+ KL Sbjct: 68 TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLT 127 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 128 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 187 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM +E+++++E FL NP +IEV+ P+STA T+ VAT + +K L++LL+ Sbjct: 188 LFFTATMPNEIRRITETFLHNPVKIEVSKPASTAVTVTQSQVATGREPHEKRETLRRLLR 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++N IIFCN+K+ V L SLEK GFSV A+HG+++Q +R L F++G + ++V Sbjct: 248 DAKDLQNAIIFCNRKREVALLAKSLEKHGFSVGALHGDMEQSARTAALDQFRKGELPILV 307 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HV NFDVP+ ++Y+HRIGRTGRAGR G A ++V D K I AI Sbjct: 308 ASDVAARGLDIPEVSHVINFDVPHHPDDYVHRIGRTGRAGRAGTAISIVCPSDTKSIAAI 367 Query: 361 EKLIEKKV 368 EKLI + + Sbjct: 368 EKLIGQDI 375 >gi|209885134|ref|YP_002288991.1| putative ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5] gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5] Length = 469 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 220/377 (58%), Positives = 276/377 (73%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS KV+ AV GY PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFSHLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV +N + Y L +ALLIGG+ F Q+ KL Sbjct: 61 TMLEKGRARARMPRTLILEPTRELAAQVQENIDHYCAGQKLNIALLIGGMSFGDQDAKLM 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+LI TPGR+LDH RGKLL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDILIATPGRLLDHTERGKLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM E+++++E FL NP+++E++ P+STA T+ + + K LL+QLL+ Sbjct: 181 LFFTATMPPEIRRITETFLHNPEKVEISRPASTATTVTQSQIGIGSDAHAKRELLRQLLR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +KN IIFCN+K++V L SL+K GF A+HG++DQ +RM L F++G + L+V Sbjct: 241 DAKDLKNAIIFCNRKRDVAILHKSLQKHGFGAAALHGDMDQSARMTALDQFRKGELPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP ++Y+HRIGRTGRAGR G A ++V+ D K I AI Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPYHPDDYVHRIGRTGRAGRLGTAISIVSPTDQKSILAI 360 Query: 361 EKLIEKKVDWLNGDLSS 377 EKLI + + G S Sbjct: 361 EKLIGQSIPHAEGSAPS 377 >gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100] gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 494 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 219/380 (57%), Positives = 285/380 (75%), Gaps = 1/380 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS KV+ A+ AGY PTPIQ + IP L+ DV GIAQTGTGKTASFVLP+L Sbjct: 1 MTFKDLKLSDKVLAAIDAAGYTTPTPIQAQAIPFALEGRDVVGIAQTGTGKTASFVLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +LE+GRAR RMPR+LILEPTRELAAQVA+ FE G + LTVALLIGG+ F+ Q KKLE Sbjct: 61 NMLEQGRARARMPRSLILEPTRELAAQVAEAFETLGSQHKLTVALLIGGVSFDDQEKKLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGAD+LI TPGR+LDHF RGKLLMN ++ LVIDEADRMLDMGFIP I+ I L+P +RQT Sbjct: 121 RGADILIATPGRLLDHFGRGKLLMNAVDYLVIDEADRMLDMGFIPDIERICKLLPPSRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+QK+++ FL+NP+++ V+ P++ A+ I + A K +L++L++ Sbjct: 181 LFFSATMPPEIQKLTDQFLKNPEQVRVSAPATAAKNITQKLKFSPADSKTKRHVLRELMR 240 Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ T++N IIFCN+K++V L SL K GF+ A+HG++DQR R L F++G I + Sbjct: 241 SEVSTIQNAIIFCNRKRDVAVLHKSLVKHGFNAGALHGDLDQRQRTATLEAFRKGEITYL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 ASD+AARGLDIP+V HVFNFDVP E+Y+HRIGRTGRAGR G A +V +++K + A Sbjct: 301 AASDVAARGLDIPEVSHVFNFDVPISPEDYVHRIGRTGRAGRDGYAAMIVTPKEMKGVRA 360 Query: 360 IEKLIEKKVDWLNGDLSSLN 379 IE L + K++W++G+ S+ N Sbjct: 361 IENLCKAKIEWIDGEPSTEN 380 >gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans DS-1] Length = 504 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 225/383 (58%), Positives = 286/383 (74%), Gaps = 5/383 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+P+V+ AV + GY +PTPIQ + IP VL DV GIAQTGTGKTASF LPM+ Sbjct: 1 MTFDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +GRAR RMPR+LILEPTRELAAQVA+NFE YGK L++ALLIGG+ F Q KKL+ Sbjct: 61 DKLSRGRARARMPRSLILEPTRELAAQVAENFETYGKYNKLSMALLIGGVSFGDQEKKLD 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH NRGK+L+ ++ILVIDEADRMLDMGFIP I+ I +PFTRQT Sbjct: 121 RGVDVLIATPGRLLDHCNRGKVLLTGVQILVIDEADRMLDMGFIPDIEEICKKLPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q++++ FL NP+RIEV SST+ I+ + T K +LQ++++ Sbjct: 181 LFFSATMPPEIQRLTDTFLHNPERIEVARASSTSANIKQVLLKT--TRDGKRDVLQRMIE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +KN IIFCN+K++V L +L K G S AIHG++DQ +R + L F+ GTI+L+V Sbjct: 239 -EDNVKNAIIFCNRKRDVSVLERALSKSGLSAGAIHGDLDQSTRTRTLDGFRNGTIRLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIPDV HVFN+DVP+ AE+Y+HRIGRTGRAG+ G A TL +ED K++ AI Sbjct: 298 ASDVAARGLDIPDVSHVFNYDVPSHAEDYVHRIGRTGRAGKSGTAVTLSTREDGKYLAAI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383 EKLI + +GD+ P E Sbjct: 358 EKLIGNPIP--SGDVDVPAAPAE 378 >gi|27379459|ref|NP_770988.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110] gi|27352611|dbj|BAC49613.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110] Length = 500 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/374 (59%), Positives = 281/374 (75%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS KV+ AV GY PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFSNLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARKDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 TILEKGRAR RMPRTLILEPTRELAAQV +NF++YG L VALLIGG+ F Q+ KL Sbjct: 61 TILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM E+++++E FL NP+++EV+ P++TA T+ V + +K LL++LL+ Sbjct: 181 LFFTATMPPEIRRITETFLHNPQKVEVSKPATTAVTVTQSQVPAGKKAHEKRELLRRLLR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +KN IIFCN+K+ V + SL+K GFSV A+HG++DQ +RM L F++G + L+V Sbjct: 241 EAKDLKNAIIFCNRKREVAIVHKSLQKHGFSVGALHGDMDQPARMAALEQFRKGELPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HVFNFDVP+ ++Y+HR+GRTGRAGR G A ++V D K + AI Sbjct: 301 ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRSGTAISIVTPLDQKSMVAI 360 Query: 361 EKLIEKKVDWLNGD 374 EKLI + + GD Sbjct: 361 EKLIGQSIPRAEGD 374 >gi|304391684|ref|ZP_07373626.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130] gi|303295913|gb|EFL90271.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130] Length = 532 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 220/372 (59%), Positives = 280/372 (75%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGLSPKV+ AV +GY +PTPIQ + IP VL R DV GIAQTGTGKTA+F LPM+ Sbjct: 1 MKFSDLGLSPKVLAAVEASGYTEPTPIQAQAIPEVLNRRDVMGIAQTGTGKTAAFTLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ EKGRAR RMPRTLILEPTRELAAQV NFEKY N+ L VALLIGG E Q K L+ Sbjct: 61 SLSEKGRARARMPRTLILEPTRELAAQVEQNFEKYAVNHKLNVALLIGGTSMEKQMKILD 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLI TPGR+LD F RG++LMN +EILVIDEADRMLDMGFIP I+ I +VPFTRQT Sbjct: 121 RGADVLIATPGRLLDLFERGRILMNGVEILVIDEADRMLDMGFIPDIERIVKMVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++K+++ FLQNP ++ V ++TA+T+E V + +K A L+ ++ Sbjct: 181 LFFSATMPPIIEKLADQFLQNPVQVMVAAAATTAKTVEQKLVKAPKKDFEKRAKLRDVID 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 SQD +KN IIFCN+K +V L S+ K+G+SV ++HG++DQ +RMK L+ F++ I +V Sbjct: 241 SQDNIKNAIIFCNRKVDVATLHRSMTKRGYSVGSLHGDMDQSARMKTLAAFRDNEITHLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIPDV HVFN+DVP ++Y+HRIGR GRAGR G AFT V D ++I A+ Sbjct: 301 ASDVAARGLDIPDVSHVFNYDVPIHPDDYVHRIGRCGRAGRDGWAFTFVTPADDRYIKAV 360 Query: 361 EKLIEKKVDWLN 372 L ++++L Sbjct: 361 MALTGDEIEYLG 372 >gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888] gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 540 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/385 (58%), Positives = 284/385 (73%), Gaps = 12/385 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLSPKV AV+ AGYV PTPIQ IP+ L DV GIAQTGTGKTASFVLPM+T Sbjct: 6 FADLGLSPKVQAAVMAAGYVNPTPIQAAAIPVALTGRDVLGIAQTGTGKTASFVLPMITR 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE GRAR RMPR+LIL PTRELAAQVA +FEKYG N+ L+VALLIGG+ + Q KKL+RG Sbjct: 66 LETGRARARMPRSLILAPTRELAAQVAQSFEKYGTNHKLSVALLIGGVSMDDQVKKLDRG 125 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RG++++ +EILVIDEADRMLDMGFIP I+ I L+P RQTL Sbjct: 126 VDVLIATPGRLLDHFGRGRVMLMGVEILVIDEADRMLDMGFIPDIEKICKLLPPRRQTLF 185 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA---LLQQLL 239 FSATM E+ ++ + FL++P RIEV P++TA+TI FV Y Q + A +L++L+ Sbjct: 186 FSATMPPEITRLVDQFLKDPTRIEVAKPATTAKTITQRFV--YCQNGEDWAKREMLRELI 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + +KN IIFCN+K++V L SL K GF+ +HG++DQ SR + L F+ G I L+ Sbjct: 244 RDGN-VKNAIIFCNRKRDVAVLYKSLSKHGFNAGELHGDMDQTSRTETLDKFRNGEIMLL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 ASD+AARGLDIPDV HVFNFD+P A++Y+HRIGRTGRAGR G + +LV+ +D+K + Sbjct: 303 AASDVAARGLDIPDVSHVFNFDLPWAADDYVHRIGRTGRAGREGHSASLVSPDDLKFVAD 362 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384 IEK+ + WL +PP E+ Sbjct: 363 IEKVTGETAIWLG------DPPSEE 381 >gi|75675849|ref|YP_318270.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] gi|74420719|gb|ABA04918.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] Length = 483 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 221/368 (60%), Positives = 277/368 (75%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS KV+ AV AGY PTPIQ + IP VL R DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFSHLGLSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV + F+KYG L VALLIGG+ F Q+ KL Sbjct: 61 TLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM +E+++V++ FL NP++IEV+ P++TA T+ V+ + +K LL++LL+ Sbjct: 181 LFFTATMPNEIRRVTDTFLHNPEKIEVSRPATTAATVAQSQVSCSREPHEKRELLRRLLR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +KN IIFCN+K++V +C SL+K GFS A+HG++DQ +R L F++G + L+V Sbjct: 241 EAKELKNAIIFCNRKRDVAIVCKSLQKHGFSAGALHGDMDQSARTASLDQFRKGELPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HV NFDVP ++Y+HRIGRTGRAGR G A T+V D K + AI Sbjct: 301 ASDVAARGLDIPEVSHVLNFDVPYHPDDYVHRIGRTGRAGRTGTAITIVCPADFKSLAAI 360 Query: 361 EKLIEKKV 368 EKL + + Sbjct: 361 EKLTGQAI 368 >gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I] gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I] Length = 467 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 229/462 (49%), Positives = 310/462 (67%), Gaps = 19/462 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FTDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+ +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDALIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P RIEV ++ +ETIE V + S+K +L+ Sbjct: 184 FSATMAPEIERITNTFLSGPARIEVARQATASETIEQAVVQVKPSRRDREGSEKRTVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ + D + NGIIFCN+K +V SL+K G+ AIHG++DQ R + L +F+EG++ Sbjct: 244 LIDGEGDKLTNGIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRTRTLDSFREGSL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VASD+AARGLD+P V HVFNFDVP AE+Y+HRIGRTGRAGR GKA T+ D K Sbjct: 304 RILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAITICTPRDEKA 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-----RKK 411 +DA+EKLI+K + L + P EK + A K + Q + D RK+ Sbjct: 364 LDAVEKLIQKDIKRLENPVKP-EPVQEKPSRSAKPDAAKPDTAKQDTAKADTGSRAPRKE 422 Query: 412 NYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453 + ++QK E+ S + + +D +G ++P+F+ Sbjct: 423 DKAAQK-------PERSSPRGKYGKRDDKAVVGMGDHLPSFI 457 >gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6] gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6] Length = 506 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 227/464 (48%), Positives = 311/464 (67%), Gaps = 18/464 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 38 FTDLNLNPKVLKAIYEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 97 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q++ +++G Sbjct: 98 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKG 157 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 158 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 217 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P+R+EV ++T+E IE V A + S+K +L+ Sbjct: 218 FSATMAPEIERITNTFLSAPERVEVARQATTSENIEQSVVMFKASRKDREGSEKRRVLRT 277 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + D + NGIIFCN+K +V + SL+K GF IHG++DQ R K L F++G++ Sbjct: 278 LIEQEGDKLTNGIIFCNRKTDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFRDGSL 337 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VASD+AARGLD+P V HVFNFDVP AE+Y+HRIGRTGRAGR GKA T+ A D K Sbjct: 338 RILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITICAPRDEKA 397 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-------KNNPIPQKSTGFDRR 409 + A+E L++K++ L + P K + Q + A K P+ + T Sbjct: 398 LAAVEDLVKKEIARLENPVKKPEPKKRKSNKDQKDAAEIAADAVTKPEPVEKSDT----- 452 Query: 410 KKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453 KK+ S P + + +Q + +D +G +MP+F+ Sbjct: 453 KKHVSKHSDEAPQPKGNRGRGGKQGGRRDDRVVVGMGDHMPSFI 496 >gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus HTCC2654] gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium HTCC2654] Length = 474 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 232/460 (50%), Positives = 311/460 (67%), Gaps = 15/460 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL LSPKV+ AV +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FSDLNLSPKVLKAVEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q++ ++RG Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDQLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++++V+DEADRMLDMGFIP I+ I LVPFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHC-FVATYAQ--YSKKCALLQQ 237 FSATM E+++++ FL NP R+EV ++T E I E C F A+ ++K LL+ Sbjct: 184 FSATMASEIERITNTFLSNPARVEVARQATTGENIAQEVCKFKASRRDRAATEKRRLLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ + + N IIFCN+K +V + SL+K G+ IHG++DQ RM+ L F++GT+ Sbjct: 244 LIDREGEACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSKRMETLQGFRDGTL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLD+P V HVFNFDVP AE+Y+HRIGRTGRAGR GKA + D K+ Sbjct: 304 RFLVASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRKGKAVMICEPRDEKN 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSS 415 +DA+E+LIEK++ + L + P+E+ + AR K + P + D+ ++ Sbjct: 364 LDAVERLIEKEIPRIESPLG--DAPVEETPKPEKKSARSKPSDKPARE---DKPARDDKP 418 Query: 416 QKSHIPLKESEKISKLQQDIQENDADS--LGFRGNMPAFM 453 + P K SE SK + D + S G R + P M Sbjct: 419 ARDEAPAK-SEDASKSRSDTRSRGKPSGRGGRRDDAPTGM 457 >gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter lacuscaerulensis ITI-1157] gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter lacuscaerulensis ITI-1157] Length = 476 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/429 (51%), Positives = 294/429 (68%), Gaps = 15/429 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASFVLPM+T+ Sbjct: 4 FTDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFVLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+ ++RG Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E++++++ FL P RIEV ++ +ETIE V + S K +L+ Sbjct: 184 FSATMAPEIERITDTFLSAPARIEVARQATASETIEQGVVMIKGGRRDREGSTKRKVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ D N IIFCN+K +V SL+K G+ AIHG++DQ R + L F+EG++ Sbjct: 244 LIDAEGDKCTNAIIFCNRKTDVDITAKSLKKYGYDAAAIHGDLDQSVRTRTLEGFREGSL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLD+P V HVFNFDVP+ E+Y+HRIGRTGRAGR GKA TL D K Sbjct: 304 RFLVASDVAARGLDVPSVSHVFNFDVPSHPEDYVHRIGRTGRAGREGKAITLCTARDEKA 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 ++AIEKLI+K++ L+ + + P E D +R ST D R+ Sbjct: 364 LEAIEKLIQKEIPRLDNPVEA--EPAEAEDKKPEKKSR-------ASTRKDERESEAKDT 414 Query: 417 KSHIPLKES 425 + P+K++ Sbjct: 415 RKDQPIKDA 423 >gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193] gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193] Length = 527 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 218/418 (52%), Positives = 293/418 (70%), Gaps = 18/418 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+ KV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FTDLNLNAKVLKAIAEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q++ +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P+RIEV +S +ETIE V A + S+K L+ Sbjct: 184 FSATMAPEIERITNTFLSAPERIEVARQASASETIEQHVVLFKASRKDREASEKRTALRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ + + NGIIFCN+K +V + SL+K GF IHG++DQ R K L F+EG + Sbjct: 244 LINAEGEKLTNGIIFCNRKSDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFREGKL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VASD+AARGLD+P V HVFNFDVP E+Y+HRIGRTGRAGR GKA T+ + D K Sbjct: 304 RILVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICSGRDEKA 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN-----PIPQKSTGFDRR 409 + A+E L++K+++ L P++K + A+ + A+K + P TG R+ Sbjct: 364 LAAVESLLQKEINRLEN-------PVKKAEPAKRSSAKKPSDQDAKPTTGSETGSGRK 414 >gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255] gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255] Length = 461 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/401 (56%), Positives = 289/401 (72%), Gaps = 14/401 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLSPKV+ A+ D GY PTPIQ + IP L+ DV GIAQTGTGKTA F LPM+ Sbjct: 4 FIDLGLSPKVMKAINDVGYDTPTPIQSEAIPHALEGRDVLGIAQTGTGKTAGFTLPMIHK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NFE+Y K L +ALLIGG+ F+ Q++ ++RG Sbjct: 64 LARGRARARMPRSLVLAPTRELAAQVAENFEQYAKYVKLDMALLIGGVSFKDQDRLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ IEI+V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFKLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH---CFVAT--YAQYSKKCALLQQ 237 FSATM E+ ++++ FLQNPK +EV ++T+E I CF A + KK LL+ Sbjct: 184 FSATMAPEINRITQEFLQNPKLVEVARQATTSENITQNVICFKAENRKLEAKKKRDLLRT 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +++ + + + NGI+FCN+K +V + SL+K G SV AIHG++DQR RM++L+ FK I Sbjct: 244 IIKDEGEKLTNGIVFCNRKVDVDIVMKSLKKHGHSVGAIHGDLDQRYRMEVLAGFKNNDI 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VASD+AARGLDIP V HVFNFDVP AE+Y+HRIGRTGRAGR G AF L +IKH Sbjct: 304 TLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRKGWAFMLCLPHEIKH 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397 +D IE+L+++ + L +L P L+K Q N +R N Sbjct: 364 LDKIEELVKQPIPRLEVEL----PKLKK----QENKSRVKN 396 >gi|149914601|ref|ZP_01903131.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b] gi|149811394|gb|EDM71229.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b] Length = 511 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/398 (53%), Positives = 285/398 (71%), Gaps = 8/398 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ AV +AGY PTPIQ IP L+ D+ GIAQTGTGKTASF LPML++ Sbjct: 4 FSDLNLNPKVLKAVEEAGYTDPTPIQAGAIPPALEGRDILGIAQTGTGKTASFTLPMLSL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y KN LT ALLIGG+ F+ Q+K +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYSKNLKLTKALLIGGVSFKEQDKLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLICTPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQT Sbjct: 124 VDVLICTPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTFF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-----SKKCALLQQ 237 FSATM E+++++ FLQNP RIEV ++ +ETIE V S+K +L+ Sbjct: 184 FSATMAPEIERITNTFLQNPVRIEVARQATASETIEQGVVMFKPSRRERADSEKRDILRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ ++ + N I+FCN+K +V + SL+K G+ IHG++DQ R + L F+ G + Sbjct: 244 IIDAEGEACTNAIVFCNRKVDVDIVSKSLKKHGYDAAPIHGDLDQSQRTRTLDGFRAGDL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VASD+AARGLD+P V HVFN+DVP AE+Y+HRIGRTGRAGR GKA + D K+ Sbjct: 304 KILVASDVAARGLDVPSVSHVFNYDVPGHAEDYVHRIGRTGRAGRSGKAMMISGPRDDKN 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 +DAIE+LI+K++ L ++ +P E D A AR Sbjct: 364 LDAIERLIQKQIPRLENPVAGTSPSDE--DSAASPDAR 399 >gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM] gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM] Length = 552 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 214/422 (50%), Positives = 302/422 (71%), Gaps = 10/422 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ KV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPML++ Sbjct: 4 FSELNLNAKVLKAIDEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLSL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q + +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQEQIIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL NP R+EV ++ +ETIE V + S+K +L++ Sbjct: 184 FSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKGSRRDREASEKRNVLRK 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ D N IIFCN+K +V + SL+K G+ IHG++DQ R + L +F+ G + Sbjct: 244 LIDAEGDKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTRTLESFRAGDL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA + + D K+ Sbjct: 304 RFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAMMICSARDEKN 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 DAIEKLI+K++ ++ L + P ++ D A+ + A + P P+++ RR K+ S++ Sbjct: 364 FDAIEKLIQKEIPRIDNPLGTA--PSDEGDNAKPDSAEGDKPKPRRTRS--RRGKSDSAR 419 Query: 417 KS 418 + Sbjct: 420 DT 421 >gi|92117844|ref|YP_577573.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14] gi|91800738|gb|ABE63113.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14] Length = 487 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 219/368 (59%), Positives = 277/368 (75%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS KV+ AV AGY PTPIQ + IP VL DV GIAQTGTGKTA+FVLPML Sbjct: 1 MSFSHLGLSDKVLAAVAAAGYTAPTPIQDQAIPHVLAHRDVLGIAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+LEKGRAR RMPRTLILEPTRELAAQV ++F+KYG L VALLIGG+ F Q+ KL Sbjct: 61 TLLEKGRARARMPRTLILEPTRELAAQVKESFDKYGVGQKLNVALLIGGVSFGDQDMKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LDH RG LL+ +E+LVIDEADRMLDMGFIP I+ I LVPFTRQT Sbjct: 121 RGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L F+ATM +E+++V++ FL NP++IEV+ P++ A T+ V+ + +K LL++LL+ Sbjct: 181 LFFTATMPNEIRRVTDAFLHNPEKIEVSRPATAAATVAQSQVSCGREAHEKRELLRRLLR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +KN IIFCN+K++V + SL+K GFSV A+HG++DQ +R L F++G + L+V Sbjct: 241 DAKDLKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP+V HV NFDVP+ ++Y+HRIGRTGRAGR G A T+V D K + AI Sbjct: 301 ASDVAARGLDIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIVCSADFKSVAAI 360 Query: 361 EKLIEKKV 368 EKL + + Sbjct: 361 EKLTGQAI 368 >gi|209964678|ref|YP_002297593.1| DeaD [Rhodospirillum centenum SW] gi|209958144|gb|ACI98780.1| DeaD [Rhodospirillum centenum SW] Length = 528 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/451 (50%), Positives = 304/451 (67%), Gaps = 19/451 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL P+V+ A+ + GY PTPIQ K IP VLQ DV G AQTGTGKTASF LPM+ Sbjct: 1 MQFSELGLGPEVLQAISEVGYTTPTPIQEKAIPWVLQGRDVLGCAQTGTGKTASFTLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL +GRAR RMPR+LILEPTRELAAQVADNFE YGK + L +ALLIGG F Q KKLE Sbjct: 61 EILAQGRARARMPRSLILEPTRELAAQVADNFEIYGKYHKLNMALLIGGESFGDQVKKLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR++D F RG +L+++I+ILVIDEADRMLDMGFIP I+ I L+P RQT Sbjct: 121 RGVDVLIATPGRMIDLFERGNILLSDIKILVIDEADRMLDMGFIPDIERIVGLLPKLRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++++++ FL NP+ I V P+S A T+ Y + +K +L+ LLQ Sbjct: 181 LFFSATMPPEIRRLADQFLMNPREITVAPPASPAATVTQALAVAYDEDKRK--VLRHLLQ 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D +KN IFCN+KK+V L SL + GF+ A+HG++ Q R + L FK+G+I L+V Sbjct: 239 TED-VKNAFIFCNRKKDVGILHQSLSRHGFNAGALHGDMVQSKRTETLEAFKQGSIDLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 SD+AARG+DI V HVFNFDVP AE+Y+HRIGRTGRAG G+AFT+ A ED + + AI Sbjct: 298 CSDVAARGIDIKGVSHVFNFDVPFNAEDYVHRIGRTGRAGLTGRAFTIAAPEDGRLVQAI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------------KIDIAQHNHARKNNP---IPQKSTG 405 EKLI +++ + D P LE + D + RK+ P P +S Sbjct: 358 EKLIGREIPRVLID-GLETPELEFEESGRGRRRPRRKDEGRKEEGRKSEPRSARPPRSRA 416 Query: 406 FDRRKKNYSSQKSHIPLKESEKISKLQQDIQ 436 DR + S+ + +P + + + + ++ ++ Sbjct: 417 ADRTEAGDSAAATPVPEERAARPERSERSVR 447 >gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516] gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516] Length = 477 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/376 (54%), Positives = 287/376 (76%), Gaps = 6/376 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q++ +++G Sbjct: 64 LHRGRARARMPRSLVLCPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDQLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYA----QYSKKCALLQQ 237 FSATM E+++++ FL NP+R+EV +S +ETI +H V + + S+K A+L+ Sbjct: 184 FSATMAPEIERITNTFLSNPERVEVARQASASETIAQHVVVFRPSRKDREGSEKRAVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +++S+ + +NGIIFCN+K +V + S++K G+ IHG++DQ +RM+ L F++GT+ Sbjct: 244 MIESEGENCRNGIIFCNRKVDVDVVAKSMKKNGYDAAPIHGDLDQSTRMRTLDGFRDGTL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAGR G+A + D K+ Sbjct: 304 RFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGREGRAMMISVPRDDKN 363 Query: 357 IDAIEKLIEKKVDWLN 372 ++AIE+LI+ ++ ++ Sbjct: 364 LEAIERLIQTEIPRMD 379 >gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601] gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601] Length = 502 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/372 (55%), Positives = 278/372 (74%), Gaps = 6/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMITS 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K LT ALLIGG+ F+ Q + +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKL++ +++++V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL NP+RIEV ++ +ETIE V + S+K +L+Q Sbjct: 184 FSATMAPEIERITNTFLSNPERIEVARQATASETIEQGAVFFKGSRKDREGSEKRTVLRQ 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ + + N I+FCN+K +V + SL+K G++ IHG++DQ R + L F+EG+I Sbjct: 244 LIDREGEKCTNAIVFCNRKVDVDIVAKSLKKYGYNAEPIHGDLDQSQRTRTLEGFREGSI 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +L++ASD+AARGLD+P V HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V D K+ Sbjct: 304 RLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVVPRDEKN 363 Query: 357 IDAIEKLIEKKV 368 + +EKL++K++ Sbjct: 364 FEDVEKLLQKEI 375 >gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3] gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3] Length = 471 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/462 (49%), Positives = 307/462 (66%), Gaps = 15/462 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+ ++RG Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P RIEV ++ +ETIE V + S+K A+L+ Sbjct: 184 FSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ + N IIFCN+K +V + SL+K G+ IHG++DQ R + L F+EG + Sbjct: 244 LIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +L+VASD+AARGLD+P V HVFNFDVP E+Y+HRIGRTGRAGR GKA TL D K Sbjct: 304 RLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEKA 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 +DAIEKLI+K + L + P E + AR + P + D+R+ Sbjct: 364 LDAIEKLIQKDIPRLENPARTEEKP-EAKPRREEKPARADKPA---RSDADKREPVKREA 419 Query: 417 KSHIPLK-ESEKISKLQQDIQENDADS----LGFRGNMPAFM 453 P+K E++K + + ++ D +G ++P+F+ Sbjct: 420 DKRDPVKREADKRDRKGGERRDRKDDRGARVVGMGDHLPSFI 461 >gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum marinum IMCC1322] Length = 464 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 226/466 (48%), Positives = 314/466 (67%), Gaps = 17/466 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGLS ++ AV + GY PTPIQ K+IP++L D+ G AQTGTGKTASF LPM+ Sbjct: 1 MKFSDLGLSDELSQAVAELGYESPTPIQEKSIPIILMGRDILGSAQTGTGKTASFTLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GRA+ RMPR+LIL PTRELAAQVA++FEK+ ++ L +ALLIGG+ F QN L+ Sbjct: 61 DILASGRAKARMPRSLILAPTRELAAQVAESFEKFSTHHKLNMALLIGGVSFSDQNTALD 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR+LDHF RGK+++N++++LVIDEADRMLDMGFIP ++ I SL+P RQT Sbjct: 121 KGVDVLIATPGRLLDHFERGKVMLNDVKVLVIDEADRMLDMGFIPDVERIVSLLPPLRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSAT++D++ K+S F+ NPK IEV P+STA+T+ + K A+L+ LL+ Sbjct: 181 LFFSATLSDDIHKISHKFVSNPKIIEVAPPASTADTVAQHL--QWTDVKSKRAVLRDLLR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + T+KN +IFCN+K+++ L SL K FS A+HG++ Q +R++ L FK+G + L++ Sbjct: 239 VE-TVKNAVIFCNRKRDISTLVKSLTKHEFSAVAMHGDMTQSARLEALDKFKKGEVPLLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359 ASD+AARGLDI + HVFNFDVP AE+Y+HRIGRTGRAG+ G+AFT+ A K+D ++I A Sbjct: 298 ASDVAARGLDIAGLSHVFNFDVPMNAEDYVHRIGRTGRAGKSGRAFTIAAGKDDKRYISA 357 Query: 360 IEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQK----STGFDRRKKNY 413 IE LI K + + GD +S D + R P ++ ST D++ + Sbjct: 358 IESLIGKTIPLVGDAGDDASETKTSTAKDTDKKPAGRGKKPAAKEADKVSTKADKKPASS 417 Query: 414 SSQKSHIPLKESEKISKLQQDIQE------NDADSLGFRGNMPAFM 453 + K H KE + ++ E D+L G++PAF+ Sbjct: 418 TKPKDH-NTKEPRQKNRNGNTKDELPSPPDCQGDTLEATGHIPAFL 462 >gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium KLH11] gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium KLH11] Length = 455 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/387 (54%), Positives = 279/387 (72%), Gaps = 6/387 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 9 FNELNLNPKVLKAIEEAGYESPTPIQEGAIPAALEGRDVLGIAQTGTGKTASFTLPMITL 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+ ++RG Sbjct: 69 LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVSFKEQDALIDRG 128 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 129 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 188 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E++++++ FL P R+EV ++ +ETIE V + S+K L+ Sbjct: 189 FSATMAPEIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRDREASQKRKTLRA 248 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ D N IIFCN+K +V SL+K G+ AIHG++DQ RMK L F++GT+ Sbjct: 249 LIDAEGDKCTNAIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRMKTLDGFRDGTL 308 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +L+VASD+AARGLD+P V HVFNFDVP E+Y+HRIGRTGRAGR GKA T+ + D K Sbjct: 309 RLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICSGRDEKA 368 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLE 383 + AIE LI+K++ ++ + + P E Sbjct: 369 LTAIESLIQKEIPRIDNPVKADEPKPE 395 >gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicaulis alexandrii HTCC2633] gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicaulis alexandrii HTCC2633] Length = 480 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/369 (57%), Positives = 273/369 (73%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGLSP ++ A+ DAGY KPTPIQ IP+ L DV GIAQTGTGKTASF LPM+ Sbjct: 1 MTFEDLGLSPALLSAIADAGYEKPTPIQEGAIPVALTGRDVLGIAQTGTGKTASFTLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +GRAR RMPR+L+L PTRELAAQVADN + Y KN+ L +ALLIGG+ FE Q K L+ Sbjct: 61 ERLSRGRARARMPRSLVLAPTRELAAQVADNVKLYAKNHKLNMALLIGGVSFEPQKKILD 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GAD+LI TPGR+LDHF RG LL+ +EILVIDEADRMLDMGFIP I+ I L+P RQT Sbjct: 121 QGADILIATPGRLLDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERILKLLPPRRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM E++ + + FL++P+R+EV P+ TA+TI V+ +K+ AL + Sbjct: 181 LFFSATMPGEIKHLVDTFLRDPERVEVTRPAQTADTITQFILRVSDNQARTKREALRAAI 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++D +KNGIIFCN+K++V + SL++ GFS IHG++DQ R K L+ FK G ++L Sbjct: 241 --NRDGVKNGIIFCNRKRDVDIVARSLQRHGFSAAPIHGDLDQSQRTKTLAEFKSGELRL 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VASD+AARGLDIP V HVFN D+P A++Y+HRIGRTGRAG+ G+A TLV+ ED K + Sbjct: 299 LVASDVAARGLDIPAVSHVFNVDIPRNADDYVHRIGRTGRAGQKGEAVTLVSSEDNKALA 358 Query: 359 AIEKLIEKK 367 + KLI K+ Sbjct: 359 KVVKLIGKE 367 >gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597] gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597] Length = 471 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 226/475 (47%), Positives = 303/475 (63%), Gaps = 41/475 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L PKV+ A+ DAGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FTDLNLDPKVLQAIADAGYESPTPIQQGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+ ++RG Sbjct: 64 LSKGRARARMPRSLVLAPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P R+EV ++ +ETIE V + S+K +L+ Sbjct: 184 FSATMAPEIERITNTFLSGPARVEVARQATASETIEQGVVMFKGSRRDREGSEKRQVLRD 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ + + +N IIFCN+K +V SL+K GF IHG+++Q R K L F++G++ Sbjct: 244 LIDREGEDCRNAIIFCNRKTDVDVTAKSLKKYGFDAAPIHGDLEQSQRTKTLEGFRDGSL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLDIP+V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA + D K+ Sbjct: 304 RFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAIMICVPRDEKN 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 + IE LIEK + +ID+ A+ P+K+ D+ K+ S Sbjct: 364 LADIESLIEKTI--------------PRIDLPNAPAAKPEGDAPEKA---DKPKRTRSRG 406 Query: 417 KSHIPLKESEKISKLQQDI------------------QENDADSLGFRGNMPAFM 453 K E+E +D +E+++ +G +MP+F+ Sbjct: 407 KPKTDTAEAEAAETPTRDDVPTEVPAPQQKARGGRRGREDESKVVGMGDHMPSFI 461 >gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N] gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N] Length = 516 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/372 (55%), Positives = 275/372 (73%), Gaps = 6/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L P+V+ AV +AGY PTPIQ + IP L+ DV GIAQTGTGKTASF LPM+TI Sbjct: 4 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ L+ ALLIGG+ F Q+K ++RG Sbjct: 64 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 +SATM E+++++ FL +IEV ++T+ETIE + ++ K A+L+ Sbjct: 184 YSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++++ + N IIFCN+K +V + SL++ GF+ IHG+++Q RMK L F++G++ Sbjct: 244 LIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VASD+AARGLDIP V HVFNFDVP E+Y+HRIGRTGRAGR GKA+T+ D KH Sbjct: 304 HLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEKH 363 Query: 357 IDAIEKLIEKKV 368 + AIE L+++ + Sbjct: 364 VTAIESLVKQAI 375 >gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101] gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101] Length = 533 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/438 (48%), Positives = 301/438 (68%), Gaps = 10/438 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ NLT ALLIGG+ F Q+K +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFGEQDKLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR++DHF RGKL++++++I+V+DEADRMLDMGFIP I+ I + PFTRQTL Sbjct: 124 VDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL NP RIEV ++T E IE + A + ++K +L+ Sbjct: 184 FSATMAPEIERITNTFLSNPVRIEVARQATTGENIEQGVLMFKASRKDREATEKRKVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ D N IIFCN+K +V + SL+K G+ IHG++DQ R K L F+ G + Sbjct: 244 LIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLD+P V HV+NFDVP+ AE+Y+HRIGRTGRAGR GKA + D K+ Sbjct: 304 RFLVASDVAARGLDVPSVSHVYNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEKN 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPP--LEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 ++ +E+L+++++ L+ L P ++ D + A K P+ T +R + S Sbjct: 364 LEDVERLVQREIPRLDNPLGGDAPAETTKEADAPKAEDAPKAEDAPK--TEKPKRSRTRS 421 Query: 415 SQKSHIPLKESEKISKLQ 432 +K P E+ K+ ++ Sbjct: 422 RKKDDAPKDETPKVDAVE 439 >gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131] gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131] Length = 524 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/372 (55%), Positives = 275/372 (73%), Gaps = 6/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L P+V+ AV +AGY PTPIQ + IP L+ DV GIAQTGTGKTASF LPM+TI Sbjct: 4 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ L+ ALLIGG+ F Q+K ++RG Sbjct: 64 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 +SATM E+++++ FL +IEV ++T+ETIE + ++ K A+L+ Sbjct: 184 YSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++++ + N IIFCN+K +V + SL++ GF+ IHG+++Q RMK L F++G++ Sbjct: 244 LIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VASD+AARGLDIP V HVFNFDVP E+Y+HRIGRTGRAGR GKA+T+ D KH Sbjct: 304 HLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEKH 363 Query: 357 IDAIEKLIEKKV 368 + AIE L+++ + Sbjct: 364 VTAIESLVKQAI 375 >gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37] gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37] Length = 469 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/376 (55%), Positives = 277/376 (73%), Gaps = 6/376 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL LSPKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+ Sbjct: 4 FSDLDLSPKVLKAIEEAGYTTPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMIHK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+ +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHVKLTKALLIGGVSFKEQDVLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ IEI+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P RIEV ++ +ETI V + S+K A+L+ Sbjct: 184 FSATMAPEIERITNTFLSAPARIEVARQATASETITQGAVVFTPSRRDRESSEKRAVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ + N IIFCN+K +V + SL K G++ IHG++DQ R + L F++G++ Sbjct: 244 LIDAEGEACSNAIIFCNRKVDVDIVAKSLTKYGYNAAPIHGDLDQSQRTRTLDGFRDGSV 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +L++ASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA+T+ D K+ Sbjct: 304 RLLIASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAYTICTPRDEKY 363 Query: 357 IDAIEKLIEKKVDWLN 372 DA+EKL++K++ L+ Sbjct: 364 FDAVEKLLQKEIPRLD 379 >gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 516 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/372 (55%), Positives = 275/372 (73%), Gaps = 6/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L P+V+ AV +AGY PTPIQ + IP L+ DV GIAQTGTGKTASF LPM+TI Sbjct: 4 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ L+ ALLIGG+ F Q+K ++RG Sbjct: 64 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 +SATM E+++++ FL +IEV ++T+ETIE + ++ K A+L+ Sbjct: 184 YSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++++ + N IIFCN+K +V + SL++ GF+ IHG+++Q RMK L F++G++ Sbjct: 244 LIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VASD+AARGLDIP V HVFNFDVP E+Y+HRIGRTGRAGR GKA+T+ D KH Sbjct: 304 HLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEKH 363 Query: 357 IDAIEKLIEKKV 368 + AIE L+++ + Sbjct: 364 VTAIESLVKQAI 375 >gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1] gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1] Length = 518 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/372 (55%), Positives = 275/372 (73%), Gaps = 6/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L P+V+ AV +AGY PTPIQ + IP L+ DV GIAQTGTGKTASF LPM+TI Sbjct: 6 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ L+ ALLIGG+ F Q+K ++RG Sbjct: 66 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRG 125 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 126 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 185 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 +SATM E+++++ FL +IEV ++T+ETIE + ++ K A+L+ Sbjct: 186 YSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRA 245 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++++ + N IIFCN+K +V + SL++ GF+ IHG+++Q RMK L F++G++ Sbjct: 246 LIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSL 305 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VASD+AARGLDIP V HVFNFDVP E+Y+HRIGRTGRAGR GKA+T+ D KH Sbjct: 306 HLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAVPSDEKH 365 Query: 357 IDAIEKLIEKKV 368 + AIE L+++ + Sbjct: 366 VTAIESLVKQAI 377 >gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62] gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62] Length = 499 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/384 (53%), Positives = 280/384 (72%), Gaps = 6/384 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L KV+ AV DAGY +PTPIQ IP L+ DV GIAQTGTGKTASF LPM+++ Sbjct: 4 FSDLNLDRKVLSAVEDAGYTEPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMISM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++GRAR RMPR+L+L PTRELAAQVA+NF+ Y KN LT ALLIGG+ F+ Q++ ++RG Sbjct: 64 LKRGRARARMPRSLVLAPTRELAAQVAENFDVYAKNTKLTKALLIGGVSFKEQDQLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL NP ++EV ++T++TI V + S+K LL+ Sbjct: 184 FSATMAPEIERITNTFLSNPAKVEVARAATTSDTITQSVVMFKGSRKDRESSEKRQLLRT 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +++++ D +NGIIFCN+K +V + S++K G IHG++DQ RM+ L+ F++GT+ Sbjct: 244 MIENEGDKCRNGIIFCNRKVDVDIVAKSMKKYGLDASPIHGDLDQSKRMETLAAFRDGTL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAG+ G A + D K+ Sbjct: 304 RFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKLGTAMMICVPRDEKN 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNP 380 + IE+L++ ++ G + P Sbjct: 364 LGDIERLVKMEIPRGEGSRDTTAP 387 >gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814] gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814] Length = 478 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 212/375 (56%), Positives = 273/375 (72%), Gaps = 2/375 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L P+V+ AV + GY +PTPIQ + IP ++Q DV GIAQTGTGKTA+FVLPM+ Sbjct: 1 MTFDDLDLDPRVLSAVKETGYTEPTPIQAQAIPAIIQGRDVTGIAQTGTGKTAAFVLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +GRA+ RMPRTLILEPTRELAAQVADNFEKYG N+ L +ALLIGG+ F Q+KKL Sbjct: 61 HKLGQGRAKARMPRTLILEPTRELAAQVADNFEKYGVNHKLNMALLIGGVSFADQDKKLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR++DHF RG+LLM +++LVIDEADRMLDMGFIP I+ I L+P RQT Sbjct: 121 AGVDVLIATPGRLMDHFERGRLLMTGVQMLVIDEADRMLDMGFIPDIEKICKLLPPRRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239 LLFSATM E+ K+++ F +PK+IEV P+ TAE I +H + + K +L+ ++ Sbjct: 181 LLFSATMPPEIAKLTKQFQNDPKQIEVARPAQTAELITQHVTKSPSDKDEIKRGILRAII 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S + +KNGI+FCN+K+ V + SL GF IHG++ Q RM+ L FK G + L+ Sbjct: 241 ASCE-VKNGIVFCNRKREVDIVAKSLNAHGFDAAPIHGDLSQSYRMETLEKFKNGDLTLL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLDIPDVGHVFN+ P +++Y+HRIGRTGRAGR G+++T+V+ D K DA Sbjct: 300 VASDVAARGLDIPDVGHVFNYAPPPNSDDYVHRIGRTGRAGRTGESYTIVSPRDQKLWDA 359 Query: 360 IEKLIEKKVDWLNGD 374 + K I K V+ D Sbjct: 360 VVKRISKDVEEFTND 374 >gi|310816695|ref|YP_003964659.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium vulgare Y25] gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium vulgare Y25] Length = 517 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 215/416 (51%), Positives = 284/416 (68%), Gaps = 15/416 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+DL L PKV+ AV +AGY PTPIQ IP L DV GIAQTGTGKTASF LPM+ Sbjct: 3 EFSDLNLDPKVLQAVAEAGYTTPTPIQAGAIPEALAGRDVLGIAQTGTGKTASFTLPMIQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K LT ALLIGG+ F+ Q+ ++R Sbjct: 63 LLSRGRARARMPRSLVLCPTRELAAQVAENFDMYAKYTKLTKALLIGGVSFKDQDTLIDR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I + PFTRQTL Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----ATYAQYSKKCALLQ 236 FSATM E+++++ FL P RIEV ++T + I V + + S+K A+L+ Sbjct: 183 FFSATMAPEIERITNTFLSAPARIEVARAATTNQNITQAVVQFKGSSKEREPSEKRAVLR 242 Query: 237 QLLQSQD-TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++++ T+ N IIFCN+K +V + SL+K G++ IHG++DQ RM+ L F++G+ Sbjct: 243 ALIEAESATLTNAIIFCNRKIDVDIVAKSLKKYGYNAEPIHGDLDQSQRMRTLDGFRDGS 302 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G F + D K Sbjct: 303 VKFLVASDVAARGLDIPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRTGSTFMICVPRDEK 362 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 ++ AIE L++ + + L L PP K R P K T RR+K Sbjct: 363 NLAAIEALVQSTITRVESPLKEL-PPARK--------PRAEKPAEDKQTERPRREK 409 >gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1] gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1] Length = 644 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 209/390 (53%), Positives = 280/390 (71%), Gaps = 6/390 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L+PKV A+++AGY PTPIQ IP L DV GIAQTGTGKTASF LPM+T+ Sbjct: 13 FADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITM 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q + +++G Sbjct: 73 LARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQAIDKG 132 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKL++N+++++V+DEADRMLDMGFIP I+ I LVPFTRQTL Sbjct: 133 VDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTLF 192 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-----TYAQYSKKCALLQQ 237 FSATM E+++++ FL NP++IEV S+T+ TIE + AQ K +L+ Sbjct: 193 FSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDMLRA 252 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + ++ D +N IIFCN+K +V + SL+K + IHG++DQ RM+ L+ F++G+I Sbjct: 253 AITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFRDGSI 312 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VASD+AARGLDIP+V HV N+DVP+ AE+Y+HRIGRTGRAG+ G A TL D K+ Sbjct: 313 TLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVPSDEKY 372 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386 + AIE LI++ + + + P E D Sbjct: 373 LGAIEGLIKQPIPRAEAPMDAGTPKAETED 402 >gi|260574781|ref|ZP_05842784.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] gi|259023198|gb|EEW26491.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] Length = 537 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/372 (55%), Positives = 274/372 (73%), Gaps = 6/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L P+V+ AVL+AGY PTPIQ + IP L DV GIAQTGTGKTASFVLPM+T+ Sbjct: 4 FSDLALDPRVLQAVLEAGYETPTPIQAQAIPHALAGRDVLGIAQTGTGKTASFVLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRA+ RMPR+L+L PTRELAAQVA+NFE Y K LT ALLIGG+ F Q+K ++RG Sbjct: 64 LGQGRAKARMPRSLVLCPTRELAAQVAENFETYAKYSKLTKALLIGGVSFGEQDKLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDH RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQT Sbjct: 124 VDVLIATPGRLLDHHERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTFF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 +SATM E+++++ FL N +IEV ++++ETIE + ++ K A+L+ Sbjct: 184 YSATMAPEIERITNTFLSNAVKIEVARQATSSETIEQALIQITPTRKDRSFADKRAVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++++ + N IIFCN+K +V + SL++ GF+ IHG++DQ R + L F++GT+ Sbjct: 244 LIRAEGEACTNAIIFCNRKMDVDVVSKSLKQHGFNASPIHGDLDQSVRTRTLDGFRDGTV 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VASD+AARGLDIP V HVFNFDVP+ E+Y+HRIGRTGRAGR GKAFT+ D K+ Sbjct: 304 HLLVASDVAARGLDIPAVSHVFNFDVPSHPEDYVHRIGRTGRAGRKGKAFTIATPYDDKY 363 Query: 357 IDAIEKLIEKKV 368 + AIE L+++ + Sbjct: 364 LAAIEHLVKQPI 375 >gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris MCS10] gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10] Length = 498 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 217/426 (50%), Positives = 296/426 (69%), Gaps = 18/426 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+LGLSPK++ A+ +AGY +PTPIQ IP L DV GIAQTGTGKTASF LP++ Sbjct: 1 MTFAELGLSPKLLEAIQEAGYSEPTPIQAGAIPAALAGRDVLGIAQTGTGKTASFTLPLI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +GRA+ RMPR+LI+ PTRELAAQ A+NFE Y K L++ALLIGG+ F Q + L Sbjct: 61 ERLSRGRAKARMPRSLIIAPTRELAAQCAENFETYSKGQKLSMALLIGGVAFGPQEEILN 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--R 178 +GADVLI TPGR+LDHF RGKLLM +++LV+DEADRMLDMGFIP ++ I SLVP R Sbjct: 121 KGADVLIATPGRLLDHFGRGKLLMTGVQMLVVDEADRMLDMGFIPDLEKIFSLVPPAPRR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKKCALLQ 236 QTL FSATM E+Q + + FL++P+R+EV+ P+ T I + + +K+ AL Q Sbjct: 181 QTLFFSATMPKEIQSLVDRFLRDPERVEVSRPAQTGANITQLMIRLTDNSAKAKRLALRQ 240 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + S++ +KNGIIF N+K++V + SL++ GFS IHG++DQ +R L++FK GT+ Sbjct: 241 AM--SREGVKNGIIFSNRKRDVDVVARSLQRHGFSAAPIHGDLDQSARTATLADFKAGTL 298 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLDIPDV HVFN+D+P+ A++Y+HRIGRTGRAG+ G++ T+ A D K Sbjct: 299 RFLVASDVAARGLDIPDVSHVFNYDMPHHADDYVHRIGRTGRAGKSGESVTIFAPGDEKS 358 Query: 357 IDAIEKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 + A+ KLI++++ L NGD P K A A+ P+ ++ R +K Sbjct: 359 LAAVLKLIKEEIPELVLDGNGDA-----PASK---ASSPDAKSEAAAPKTASTRTRTRKP 410 Query: 413 YSSQKS 418 S+KS Sbjct: 411 RVSRKS 416 >gi|259416782|ref|ZP_05740702.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B] gi|259348221|gb|EEW59998.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B] Length = 490 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 229/443 (51%), Positives = 304/443 (68%), Gaps = 16/443 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T Sbjct: 4 FTDLNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMITR 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+ ++RG Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ IEI+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P+R+E+ ++T+ETIE V A + S+K +L++ Sbjct: 184 FSATMAPEIERITNTFLSGPERVEIARQATTSETIEQAVVMFKASRKDREGSEKRRVLRE 243 Query: 238 LL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ Q + +KN IIFCN+K +V + SL+K G+ IHG++DQ R K L F++GT+ Sbjct: 244 LINQEGEAVKNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGTL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VASD+AARGLD+P V HVFNFDVP AE+Y+HRIGRTGRAGR+GKA TL + D K Sbjct: 304 KILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRNGKAITLCSPRDEKA 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 +DA+E L++K++ L + + P K A A + P P + R + ++ Sbjct: 364 LDAVEGLVQKEITRLE---NPVKPTPRK--TATKEDATSDKPKPAR-----RSRSKTTAA 413 Query: 417 KSHIPLKESEKISKLQQDIQEND 439 KS P E+ + QQ Q D Sbjct: 414 KSEEPPVEAAAQTTEQQPQQAQD 436 >gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 507 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/372 (55%), Positives = 274/372 (73%), Gaps = 6/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L P+V+ AV +AGY PTPIQ + IP L+ DV GIAQTGTGKTASF LPM+TI Sbjct: 4 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ L+ ALLIGG+ F Q+K ++RG Sbjct: 64 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 +SATM E+++++ FL +IEV ++T+ETIE + ++ K A+L+ Sbjct: 184 YSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQITPTRKERSFADKRAVLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++++ + N IIFCN+K +V + SL++ GF+ IHG++DQ R K L F++GT+ Sbjct: 244 LIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLDQSQRTKTLDGFRDGTL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VASD+AARGLDIP V HVFNFD+P E+Y+HRIGRTGRAGR GKAF++ D K+ Sbjct: 304 HLLVASDVAARGLDIPAVSHVFNFDLPTHPEDYVHRIGRTGRAGRKGKAFSIAVPSDEKY 363 Query: 357 IDAIEKLIEKKV 368 + AIE L+++ + Sbjct: 364 LAAIESLVKQAI 375 >gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex HEL-45] gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex HEL-45] Length = 529 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/388 (52%), Positives = 280/388 (72%), Gaps = 6/388 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+ KV+ AV++AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPML++ Sbjct: 4 FTDLNLNAKVLKAVVEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLSL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+K +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL NP+RIEV ++T+E I V A + ++K LL+ Sbjct: 184 FSATMAPEIERITNTFLSNPERIEVARQATTSENITQGVVMFKASRKDREATEKRKLLRM 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ + N IIFCN+K +V + SL+K G+ IHG++DQ R K L F+ G + Sbjct: 244 LIDAEGEKCTNAIIFCNRKMDVDTVAKSLKKHGYDAAPIHGDLDQSQRTKTLDGFRNGEL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++ASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA + D K+ Sbjct: 304 RFLIASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEKN 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 + +E+L++K++ L L + P E+ Sbjct: 364 FEDVERLVQKEIPRLENLLQTDAPAPEE 391 >gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium HTCC2083] gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium HTCC2083] Length = 495 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/430 (50%), Positives = 292/430 (67%), Gaps = 15/430 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L PKV+ A+ DAGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FSDLNLDPKVLKAIDDAGYESPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K + L+ ALLIGG+ F+ Q++ +++ Sbjct: 64 LGKGRARARMPRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFKEQDRLIDK 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+LDH RGKLL+ ++++V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 GVDVLIATPGRLLDHVERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQ 236 FSATM E+++++ FL NP R+EV ++ +E IE + + ++K L+ Sbjct: 184 FFSATMAPEIERITNTFLSNPARVEVARQATASENIEQVVMMFKGSRKDREGTEKRKALR 243 Query: 237 QLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L+ ++ D N IIFCN+K +V + SL+K G+ IHG++DQ R K L F+EG Sbjct: 244 KLIDAEGDACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFREGG 303 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA + D K Sbjct: 304 LRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAVMICVPRDEK 363 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR-RKKNYS 414 + DAIEKLI+K++ + ++ PL+ D + AR + P + R R ++ + Sbjct: 364 NFDAIEKLIQKQI-------TRIDNPLKPADAPAPSEARADGASPAREDKPKRTRARSRN 416 Query: 415 SQKSHIPLKE 424 K P E Sbjct: 417 KPKDDSPKTE 426 >gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11] gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11] Length = 501 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/372 (54%), Positives = 276/372 (74%), Gaps = 6/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ NLT ALLIGG+ F+ Q+ +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFKEQDALIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P+RIEV ++T+E I V A + S+K LL+ Sbjct: 184 FSATMAPEIERITNTFLSAPERIEVARQATTSENITQGVVLFKASRRDREGSEKRKLLRH 243 Query: 238 LL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ Q + N IIFCN+K +V SL+K G++ IHG++DQ RMK L F+EG + Sbjct: 244 LIDQEGEKCTNAIIFCNRKTDVDICAKSLKKYGYNAAPIHGDLDQSQRMKTLDEFREGNL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A + +D K+ Sbjct: 304 RFLVASDVAARGLDVPTVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGTAMMICVPKDEKN 363 Query: 357 IDAIEKLIEKKV 368 ++ IE+L+++++ Sbjct: 364 LEDIERLVQQEI 375 >gi|85703303|ref|ZP_01034407.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217] gi|85672231|gb|EAQ27088.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217] Length = 515 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 209/402 (51%), Positives = 281/402 (69%), Gaps = 7/402 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ A+ +AGY PTPIQ + IP LQ DV GIAQTGTGKTASF LPML++ Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALQGRDVLGIAQTGTGKTASFTLPMLSL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+K +++G Sbjct: 64 LSRGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-----SKKCALLQQ 237 FSATM E+++++ FL NP R+EV ++ +ETIE V S+K LL+ Sbjct: 184 FSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPTRRENADSEKRRLLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ + + N IIFCN+K +V + SL K G+ IHG+++Q R + L F+ GT+ Sbjct: 244 LIDREGEACSNAIIFCNRKVDVDVVSKSLIKYGYDAAPIHGDLEQSQRTRTLDGFRAGTL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++ASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA + D K+ Sbjct: 304 RFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRAGKALMICNPRDEKN 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398 + +E L++K++ + + +L P + Q + R P Sbjct: 364 LAGVEALLQKEIPRVESPI-TLGAPTTNAEPPQGSDERPVKP 404 >gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh 114] gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh 114] Length = 505 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/411 (50%), Positives = 288/411 (70%), Gaps = 10/411 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+PKV+ A+ +AGY PTPIQ IP L DV GIAQTGTGKTASF LPM+T+ Sbjct: 24 FSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITL 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+K +++G Sbjct: 84 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLIDKG 143 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 144 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 203 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P+RIEV ++T+ETIE + A + ++K +L+ Sbjct: 204 FSATMAPEIERITNTFLSAPERIEVARQATTSETIEQGVLMFKASRKDREGTEKRKVLRA 263 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ + N I+FCN+K +V + SL+K + IHG++DQ R + L F++G++ Sbjct: 264 LIDAEGEKCTNAIVFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDGSL 323 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++ASD+AARGLD+P V HVFNFDVP AE+Y+HRIGRTGRAGR GKA + D ++ Sbjct: 324 KFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPRDERN 383 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKID----IAQHNHARKNNPIPQKS 403 ++ IE+L+++++ L+ L + P EK A R P+KS Sbjct: 384 LEDIERLVQREIPRLDNPLGTKEAPKEKAPDGEAAASEKPKRTRTRAPRKS 434 >gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36] gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36] Length = 559 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/379 (52%), Positives = 278/379 (73%), Gaps = 6/379 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 24 FSDLNLNPKVLKAIDEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITL 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F Q+K +++G Sbjct: 84 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQDKLIDKG 143 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR++DHF RGKL++++++I+V+DEADRMLDMGFIP I+ I + PFTRQTL Sbjct: 144 VDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLF 203 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P+RIEV ++T+E IE + A + ++K +L+ Sbjct: 204 FSATMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKRKVLRA 263 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ D N IIFCN+K +V + SL+K G+ IHG++DQ R K L F+ G + Sbjct: 264 LIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDL 323 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLD+P V HV+N+DVP+ AE+Y+HRIGRTGRAGR GKA + D K+ Sbjct: 324 RFLVASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEKN 383 Query: 357 IDAIEKLIEKKVDWLNGDL 375 ++ +E+L+++++ L+ L Sbjct: 384 LEDVERLVQREIPRLDNPL 402 >gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1] gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1] Length = 554 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/379 (52%), Positives = 278/379 (73%), Gaps = 6/379 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 24 FSDLNLNPKVLKAINEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITL 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F Q+K +++G Sbjct: 84 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQDKLIDKG 143 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR++DHF RGKL++++++I+V+DEADRMLDMGFIP I+ I + PFTRQTL Sbjct: 144 VDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLF 203 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P+RIEV ++T+E IE + A + ++K +L+ Sbjct: 204 FSATMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKRKVLRA 263 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ D N IIFCN+K +V + SL+K G+ IHG++DQ R K L F+ G + Sbjct: 264 LIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDL 323 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLD+P V HV+N+DVP+ AE+Y+HRIGRTGRAGR GKA + D K+ Sbjct: 324 RFLVASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEKN 383 Query: 357 IDAIEKLIEKKVDWLNGDL 375 ++ +E+L+++++ L+ L Sbjct: 384 LEDVERLVQREIPRLDNPL 402 >gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199] gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199] Length = 521 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 211/420 (50%), Positives = 292/420 (69%), Gaps = 26/420 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS +VV AV+ +GY KPTPIQ K IP VL DV G AQTGTGKTASF LPM+ I Sbjct: 8 FADLGLSDEVVSAVVTSGYTKPTPIQEKAIPYVLMGRDVLGCAQTGTGKTASFTLPMIDI 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L GRA+ RMPR+LI+ PTRELAAQV++NF KYG+N L++ALLIGG+ Q KL+RG Sbjct: 68 LSAGRAKARMPRSLIIAPTRELAAQVSENFVKYGQNTRLSMALLIGGVSMGDQEAKLDRG 127 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RG++L+ +++ILVIDEADRMLDMGFIP ++ I SL+P RQTL Sbjct: 128 VDVLIATPGRLLDHFERGRILLTDVKILVIDEADRMLDMGFIPDVERIVSLLPTIRQTLF 187 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL------LQ 236 FSATM E++++++ FL NPK + V+ P+S AE + AQ+ +C++ L+ Sbjct: 188 FSATMAPEIKRLADKFLMNPKEVSVDAPASAAENV--------AQHLVRCSVKDKRDALR 239 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+S+ T+ + +IFCN+K+++ L SL++ G +HG++ Q +R + L+ FK G Sbjct: 240 SLLKSE-TVDSALIFCNRKRDIGVLHRSLQRYGIEAVQLHGDMSQPARTETLAKFKAGEA 298 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +L++ SD+AARG+DI + HVFNFDVP+ AE+Y+HRIGRTGRAG G+AFTL ED K Sbjct: 299 RLVICSDVAARGIDIKGLSHVFNFDVPSHAEDYVHRIGRTGRAGLSGRAFTLATPEDSKL 358 Query: 357 IDAIEKLIEKKVDWLNGD----LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 + A+E+LI K+ + D ++ + P E +++A + P + TG R ++ Sbjct: 359 LSAVERLIGMKIPVIQLDGAAPAAAESRPAETVELASETN-------PPRKTGRGRGARS 411 >gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL 12] Length = 493 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 203/374 (54%), Positives = 270/374 (72%), Gaps = 8/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L PKV+ A+ +AGY PTPIQ + IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+ +++G Sbjct: 64 LRKGRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKL++ +++++V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCALL 235 FSATM E+++++ FL NP R+EV S+T+ETI V + +K +L Sbjct: 184 FSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKREML 243 Query: 236 QQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L++ + D +N IIFCN+K +V + SL K G+ IHG+++Q R K L F++G Sbjct: 244 RALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQFRDG 303 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 T++ +VASD+AARGLDIP+V HVFNFDVP+ AE+Y+HRIGRTGRAGR G L D Sbjct: 304 TLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLAVPADD 363 Query: 355 KHIDAIEKLIEKKV 368 K + AIE L++ ++ Sbjct: 364 KLLAAIEDLVKLEI 377 >gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium HTCC2150] gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium HTCC2150] Length = 574 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/368 (54%), Positives = 261/368 (70%), Gaps = 6/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L PKV+ AV + GY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+++ Sbjct: 4 FSELSLDPKVLKAVAETGYESPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMISL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L KGRAR RMPR+L+L PTRELAAQVA+NF+ Y K LT ALLIGG+ F+ Q+K ++RG Sbjct: 64 LSKGRARARMPRSLVLAPTRELAAQVAENFDAYSKYSKLTKALLIGGVSFKEQDKLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDH RGKLL+ ++I+V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHVERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFKLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA------TYAQYSKKCALLQ 236 FSATM E+++++ FL P ++EV ++T+ETI + + K+ L Sbjct: 184 FSATMAPEIERITNTFLSAPVKVEVARAATTSETITQGLIWHEPKRREFGAKDKRNILRA 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + + N IIFCN+K V + SL+K G++ IHG++DQ RMK+L+ F+EG I Sbjct: 244 TIEAEGEKCTNAIIFCNRKVEVDIVAKSLKKHGYNAEPIHGDLDQSHRMKVLNGFREGEI 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + + ASD+AARGLDIP+V HVFNFDVP AE+Y+HRIGRTGRAGR G AFT+ D K Sbjct: 304 RFLCASDVAARGLDIPNVSHVFNFDVPGHAEDYVHRIGRTGRAGRTGTAFTIATPNDAKQ 363 Query: 357 IDAIEKLI 364 + A+E+L+ Sbjct: 364 LAAVEELV 371 >gi|163738820|ref|ZP_02146234.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis BS107] gi|163741469|ref|ZP_02148860.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10] gi|161385203|gb|EDQ09581.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10] gi|161388148|gb|EDQ12503.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis BS107] Length = 516 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/379 (53%), Positives = 275/379 (72%), Gaps = 6/379 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+ +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKL++++++++V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P R+EV ++T+E I V A + S+K LL+ Sbjct: 184 FSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRKLLRH 243 Query: 238 LL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ Q + N IIFCN+K +V + SL+K G+ IHG++DQ R K L F+EG++ Sbjct: 244 LIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFREGSL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A + +D K+ Sbjct: 304 RFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICVPKDEKN 363 Query: 357 IDAIEKLIEKKVDWLNGDL 375 ++ IE+L++ ++ + L Sbjct: 364 LEDIERLVQNEIPRIENPL 382 >gi|149204620|ref|ZP_01881585.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035] gi|149141879|gb|EDM29929.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035] Length = 506 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/372 (55%), Positives = 269/372 (72%), Gaps = 6/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ A+ +AGY PTPIQ + IP L DV GIAQTGTGKTASF LPML++ Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALVGRDVLGIAQTGTGKTASFTLPMLSL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+K +++G Sbjct: 64 LSRGRARARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-----SKKCALLQQ 237 FSATM E+++++ FL NP R+EV ++ +ETIE V S+K LL+ Sbjct: 184 FSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPSRRENADSEKRKLLRA 243 Query: 238 LLQSQDTM-KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ + N IIFCN+K +V + SL K G+ IHG++DQ R + L F+ GT+ Sbjct: 244 LIDREGAACSNAIIFCNRKIDVDVVAKSLIKYGYDAAPIHGDLDQSQRTRTLDGFRAGTL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++ASD+AARGLD+P V HVFNFDVP+ AE+Y+HRIGRTGRAGR GKA + D K+ Sbjct: 304 RFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKALMICNPRDEKN 363 Query: 357 IDAIEKLIEKKV 368 + +E LI+K++ Sbjct: 364 LAGVEALIQKEI 375 >gi|163732038|ref|ZP_02139484.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och 149] gi|161394336|gb|EDQ18659.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och 149] Length = 504 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/413 (50%), Positives = 289/413 (69%), Gaps = 10/413 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F++L L+PKV+ A+ +AGY PTPIQ IP L DV GIAQTGTGKTASF LPM+ Sbjct: 22 IKFSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI 81 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+K ++ Sbjct: 82 TLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLID 141 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I SL PFTRQT Sbjct: 142 KGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALL 235 L FSATM E+++++ FL P+R+EV ++ +ETIE + A + ++K LL Sbjct: 202 LFFSATMAPEIERITNTFLSAPERVEVARQATASETIEQGVLKFKASRKDREGTEKRKLL 261 Query: 236 QQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L+ ++ + N IIFCN+K +V + SL+K + IHG++DQ R + L F++G Sbjct: 262 RALIDAEGEKCTNAIIFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDG 321 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +++ ++ASD+AARGLD+P V HVFNFDVP AE+Y+HRIGRTGRAGR GKA + D Sbjct: 322 SLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPRDE 381 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ----HNHARKNNPIPQKS 403 ++++ IE+L+++++ L+ L + P EK ++ R P+KS Sbjct: 382 RNLEDIERLVQREIPRLDNPLGTPAEPEEKTTASEPAVTEKPKRTRTRAPRKS 434 >gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003] gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003] Length = 548 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/372 (54%), Positives = 268/372 (72%), Gaps = 6/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L P V+ A+ DAGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T+ Sbjct: 4 FTDLKLDPAVLRAIADAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMVTM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L GRAR RMPR+L+L PTRELAAQVA+NF+ Y K LT ALLIGG+ F Q+K ++RG Sbjct: 64 LSSGRARARMPRSLVLCPTRELAAQVAENFDTYAKYTRLTKALLIGGVSFGEQDKLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ ++I+V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-----LLQQ 237 FSATM E+++++ FL P RIEV ++T+ETI + + A LL+ Sbjct: 184 FSATMAPEIERITNTFLHAPARIEVARQATTSETITQKLIQITPPRRDQSAKAKRELLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +++S+ + N IIFCN+K +V + SL+ GF+ IHG++DQ R K L F++G++ Sbjct: 244 IIKSEGEACTNAIIFCNRKTDVDIVAKSLKTHGFNAAPIHGDLDQSLRTKTLDAFRDGSL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 QL++ASD+AARGLDIP V HVFN+D+P+ AE+Y+HRIGRTGRAGR G A+++ D K+ Sbjct: 304 QLLIASDVAARGLDIPAVSHVFNYDLPSHAEDYVHRIGRTGRAGRLGTAYSIGTPADAKY 363 Query: 357 IDAIEKLIEKKV 368 + AIE L+++++ Sbjct: 364 LAAIEALVKQEI 375 >gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium zucineum HLK1] gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium zucineum HLK1] Length = 513 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 204/380 (53%), Positives = 273/380 (71%), Gaps = 4/380 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+DLGLSP + AV + GY TPIQ + IP+ LQ DV GIAQTGTGKTA+F LPM+ Sbjct: 3 EFSDLGLSPATLKAVAETGYTTATPIQAEAIPMALQGRDVLGIAQTGTGKTAAFTLPMID 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L GRA+ RMPR L++ PTRELA QV+ +FEKY LT ALLIGG+ F+ Q +KL+R Sbjct: 63 RLAAGRAKARMPRALVIAPTRELADQVSASFEKYAMGQKLTWALLIGGVSFKDQEQKLDR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+LDHF RGKLLM ++I+V+DEADRMLDMGFIP ++ I L P +QTL Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQIMVVDEADRMLDMGFIPDLERIFKLTPAKKQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKKCALLQQLL 239 FSATM E+ ++++ FL +P RIE + P++TAETI V + +K+ AL + + Sbjct: 183 FFSATMPPEITRLTKQFLNDPVRIEASRPATTAETITQYLVRIPSADPKAKRTALRELIG 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ + NGI+FCN+K V + SL+K GF AIHG++DQ +RM+ L +F+ G ++L+ Sbjct: 243 RAE--INNGIVFCNRKTEVDIVAKSLKKHGFDAAAIHGDLDQATRMRTLESFRNGELKLL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 ASD+AARGLDIP V HVFNFDVP+ A++Y+HRIGRTGRAGR G+AF +V D K++D Sbjct: 301 CASDVAARGLDIPAVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAFMIVTPADSKNLDK 360 Query: 360 IEKLIEKKVDWLNGDLSSLN 379 + KLI K + ++ DL N Sbjct: 361 VLKLIGKTPEEVSLDLDWAN 380 >gi|99081650|ref|YP_613804.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040] gi|99037930|gb|ABF64542.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040] Length = 493 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 226/446 (50%), Positives = 303/446 (67%), Gaps = 20/446 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+PKV+ A+ +AGY PTPIQ IP L+ DV GIAQTGTGKTASF LPM+T Sbjct: 4 FTDLNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMITR 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K+ LT ALLIGG+ F+ Q+ ++RG Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKLL+ IEI+V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL P+R+E+ ++T+E IE V A + S+K +L++ Sbjct: 184 FSATMAPEIERITNTFLSGPERVEIARQATTSENIEQAVVMFKASRKDREGSEKRRVLRE 243 Query: 238 LL-QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ Q + ++N IIFCN+K +V + SL+K G+ IHG++DQ R K L F++GT+ Sbjct: 244 LINQEGEAVQNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGTL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VASD+AARGLD+P V HVFNFDVP AE+Y+HRIGRTGRAGR GKA TL + D K Sbjct: 304 KILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITLCSPRDEKA 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 +DA+E L++K++ L + + P K A + + P P + + R K S++ Sbjct: 364 LDAVEGLVQKEITRLE---NPVKPTPRK--TATKDEDAGDKPKPARRS----RSKAASAK 414 Query: 417 KSHIPLKESE-----KISKLQQDIQE 437 P E+ ++ QQ QE Sbjct: 415 TDATPTPEAANDAAPQVEAPQQQPQE 440 >gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58] gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58] Length = 443 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 224/455 (49%), Positives = 296/455 (65%), Gaps = 20/455 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ AV ++GY PTPIQ + IP VL D+ GIAQTGTGKTASFVLPM+ Sbjct: 1 MTFADLGLSDELLRAVTESGYDTPTPIQAQAIPSVLMMKDIIGIAQTGTGKTASFVLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GRAR MPR+LILEPTRELAAQVA+NFEKYGK + L++ALLIGG+ Q K LE Sbjct: 61 DILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQVKALE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR++D F RGK+L+N +LVIDEADRMLDMGFIP I++I + +P RQT Sbjct: 121 KGVDVLIATPGRLMDLFERGKILLNGCNMLVIDEADRMLDMGFIPDIEHICTKLPAQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPK IEV P++ + I V A+ KK L+ LL Sbjct: 181 LLFSATMPPVIKKLADRFLSNPKSIEVARPATASTNIAQHLVKVDAR--KKREALRALLD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q +++ +IFCN+K V L SL++ G+ IHG+IDQ SR+ L F++GT+ ++V Sbjct: 239 GQ-QVQSAVIFCNRKTTVRELNKSLQRDGYKSGEIHGDIDQASRIAELERFRDGTVNILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDI V HVFNFD P ++Y+HRIGRTGRAG G A+T V K+D + ID I Sbjct: 298 ASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTKDDAEAIDNI 357 Query: 361 EKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 +KLI K+D+ + G+ + P E P P ++ +R + Q+ Sbjct: 358 QKLIGTKIDYADFAGETTDAEPKAE------------GKPAPTRTRRAERLDEQRKDQRR 405 Query: 419 HIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453 + S +Q D G+ G +P F+ Sbjct: 406 E---ERKAPASGPRQSKMPEDGPDEGWNGPVPEFL 437 >gi|288958478|ref|YP_003448819.1| ATP-dependent RNA helicase [Azospirillum sp. B510] gi|288910786|dbj|BAI72275.1| ATP-dependent RNA helicase [Azospirillum sp. B510] Length = 521 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/374 (54%), Positives = 273/374 (72%), Gaps = 3/374 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL P V+ A+ D GY +PTPIQ + IP VLQR DV G AQTGTGKTASF LPM+ Sbjct: 1 MLFSELGLGPDVLRAIEDKGYTQPTPIQEQAIPCVLQRRDVLGCAQTGTGKTASFTLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +IL GRAR RMPR+LILEPTRELAAQVA++FE YGK + L++ALLIGG F Q KKL+ Sbjct: 61 SILASGRARARMPRSLILEPTRELAAQVAESFEVYGKYHKLSMALLIGGETFTEQVKKLD 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR++D F RG +++N+I++ VIDEADRMLDMGFIP I+ I S +P RQT Sbjct: 121 RGVDVLIATPGRLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPKNRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++++++ FL +P I V P+S AET+ + ++ L+ LLQ Sbjct: 181 LFFSATMPPEIRRLADAFLTDPMEITVAPPASPAETVTQALALVHEMDKRRA--LRHLLQ 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D +KN IFCN+K+++ L SLE+ GF+V A+HG++ Q R + L FK+G I L+V Sbjct: 239 TED-VKNAFIFCNRKRDIAVLQKSLERHGFNVGALHGDMVQSKRTETLERFKQGEITLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 SD+AARG+D+ + HVFNFDVP ++Y+HRIGRTGRAG+ G+AF L +D K + AI Sbjct: 298 CSDVAARGIDVQGLSHVFNFDVPLTPDDYVHRIGRTGRAGKQGRAFMLATPDDTKLVGAI 357 Query: 361 EKLIEKKVDWLNGD 374 +LI++++ + D Sbjct: 358 TRLIKREIPMIAID 371 >gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus 307] gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus 307] Length = 530 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/376 (52%), Positives = 272/376 (72%), Gaps = 6/376 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L KV+ AV + GY PTPIQ IP L+ DV GIAQTGTGKTA F LPM+T+ Sbjct: 4 FSDLKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGRDVLGIAQTGTGKTAGFTLPMITM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++GRAR RMPR+L+L PTRELAAQVA+NF+ Y K LT ALLIGG+ F+ Q+ ++RG Sbjct: 64 LKRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDNLIDRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKL++++++I+V+DEADRMLDMGFIP I+ I L PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----ATYAQYSKKCALLQQ 237 FSATM E+++++ FL NP +IEV ++T+ETI + ++ +K LL+ Sbjct: 184 FSATMAPEIERITNTFLSNPAKIEVARAATTSETITQGVIMFKGSKKTSEAIEKQKLLRD 243 Query: 238 LLQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ S+ +NGIIFCN+K +V + S+ K G IHG+++Q RM+ L+ F++GT+ Sbjct: 244 IIASEGANCRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRTLAKFRDGTL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIGRTGRAG+ G + D K+ Sbjct: 304 RFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKTGATIMICTPRDQKN 363 Query: 357 IDAIEKLIEKKVDWLN 372 +D IE+L+E V ++ Sbjct: 364 LDDIERLVEMAVPRMD 379 >gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45] gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45] Length = 473 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 223/466 (47%), Positives = 307/466 (65%), Gaps = 21/466 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ A+ +AGY PTPIQ IP L DV GIAQTGTGKTASF LPM+T Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFTLPMITA 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K LT ALLIGG+ F+ Q + +++G Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDHF RGKL++ +++++V+DEADRMLDMGFIP I+ I SL PFTRQTL Sbjct: 124 VDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCALLQQ 237 FSATM E+++++ FL NP+R+EV ++ +ETIE V + ++K +L+Q Sbjct: 184 FSATMAPEIERITNTFLSNPERVEVARQATASETIEQGAVFFKGSRRDREATEKRDVLRQ 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + N I+FCN+K +V + SL+K G++ IHG++DQ R + L F++G+I Sbjct: 244 IIDREGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQRTRTLDGFRDGSI 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +L++ASD+AARGLD+P V HVFNFDVP AE+Y+HRIGRTGRAGR GKAFT+V+ D K+ Sbjct: 304 RLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVSPRDEKN 363 Query: 357 IDAIEKLIEK---KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 + +EKL++K +V+ N + P E D A + K KST R K Sbjct: 364 FEDVEKLLQKEIPRVELPNMSAPAAVPTPEPEDTASEDQGEK------KSTRVRSRSKKP 417 Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADS------LGFRGNMPAFM 453 ++S E + ND + +G +MP F+ Sbjct: 418 EREESKPARAEKPSAPRRNDRGDRNDRNDRSDKGVVGMGDHMPEFI 463 >gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] Length = 799 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/393 (52%), Positives = 271/393 (68%), Gaps = 11/393 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLSP+ + A+ + GY PTPIQ++ IP V DV GIAQTGTGKTASF LPM+ Sbjct: 1 MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G+A+ RMPR+LIL PTRELA QV++NF YGK L++ALLIGG Q K L+ Sbjct: 61 DILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKVLD 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR++D F RG +L+ ++++LVIDEADRMLDMGFIP ++ I +L+P RQT Sbjct: 121 RGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++++++ FL NPK + + AET+E + A S+K L+QLL+ Sbjct: 181 LFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKA--SEKREALRQLLR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++T+ N IFCN+K++V L SL GF + A+HG++ Q R + L FK +QLMV Sbjct: 239 -RETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 SD+AARG+D+ +V HVFNFDVP E+YIHRIGRTGRAGR G+A+TL ED K++ AI Sbjct: 298 CSDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393 E L+ K + +P LE D+A + A Sbjct: 358 ENLLGKTI--------PPDPQLELSDVAVEDVA 382 >gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 506 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/441 (49%), Positives = 291/441 (65%), Gaps = 11/441 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ AV + GY +PTP+Q IP VL D+ +AQTGTGKTASFVLPM+ Sbjct: 15 MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GR R RMPR+LILEPTRELAAQVA+NFEKYGK + L+++LLIGG+P Q LE Sbjct: 75 DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 134 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR+LD F RGK+L+++ E+LVIDEADRMLDMGFIP I+ I + +P +RQT Sbjct: 135 KGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQT 194 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPK+IE++ P++ I+ + + SKK L L Sbjct: 195 LLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPR-SKKKKLCDMLRA 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIFCN+K V L +LE+QGFSV IHG++ Q R L FK G I ++V Sbjct: 254 EKD--HTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLD+ + HVFNFDVP ++YIHRIGRTGR G G+A T V D + I AI Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAI 371 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 EKL+ ++ L + P + ++ ++ P+ +KS RK + +K+ Sbjct: 372 EKLMGVEIPRLGNRKKNAYPSKSEETVS----PKQAKPVQEKSAASSPRK---APRKTET 424 Query: 421 PLKESE-KISKLQQDIQENDA 440 P K E ++ ++ D +N A Sbjct: 425 PKKLPEDRLDSVESDFPKNQA 445 >gi|241762057|ref|ZP_04760141.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373523|gb|EER63110.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 506 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/441 (49%), Positives = 291/441 (65%), Gaps = 11/441 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ AV + GY +PTP+Q IP VL D+ +AQTGTGKTASFVLPM+ Sbjct: 15 MSFADLGLSKELLQAVAELGYEEPTPVQATAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GR R RMPR+LILEPTRELAAQVA+NFEKYGK + L+++LLIGG+P Q LE Sbjct: 75 DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 134 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR+LD F RGK+L+++ E+LVIDEADRMLDMGFIP I+ I + +P +RQT Sbjct: 135 KGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQT 194 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPK+IE++ P++ I+ + + SKK L L Sbjct: 195 LLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPR-SKKKKLCDMLRA 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIFCN+K V L +LE+QGFSV IHG++ Q R L FK G I ++V Sbjct: 254 EKD--HTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLD+ + HVFNFDVP ++YIHRIGRTGR G G+A T V D + I AI Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAIAAI 371 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 EKL+ ++ L + +P + ++ ++ P +KS RK + +K+ Sbjct: 372 EKLMGVEIPRLGNRKKNAHPSKSEEAVS----PKQAKPAQEKSAAPSPRK---APRKAET 424 Query: 421 PLKESE-KISKLQQDIQENDA 440 P K E ++ ++ D +N A Sbjct: 425 PKKSPEDRLDSVESDFPKNQA 445 >gi|85708956|ref|ZP_01040022.1| DNA and RNA helicase [Erythrobacter sp. NAP1] gi|85690490|gb|EAQ30493.1| DNA and RNA helicase [Erythrobacter sp. NAP1] Length = 497 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/368 (56%), Positives = 264/368 (71%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLSP+++ AV DAGY +PT IQ + IP VL D+ GIAQTGTGKTASFVLPM+ Sbjct: 36 MTFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMI 95 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ GR R MPR+LILEPTRELAAQVA+NFEKYG N++L +ALLIGG+ Q K L+ Sbjct: 96 DVMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGANHDLKMALLIGGVQMGDQLKTLD 155 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR++D F RGK+L+N E+LVIDEADRMLDMGFIP I+ I +P TRQT Sbjct: 156 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQT 215 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++K+++ FL NPKRIE ++T + I V A+ + L+ LL Sbjct: 216 MLFSATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVKARQKRDT--LEWLL- 272 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D ++ IIF N+K V L L++QGF+ IHG++DQ SR+K L FK G + ++V Sbjct: 273 ANDQVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILV 332 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDI V HVFNFD P ++Y+HRIGRTGRAG G+AFTLVA ED + I + Sbjct: 333 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANV 392 Query: 361 EKLIEKKV 368 EKL K+ Sbjct: 393 EKLTGAKI 400 >gi|85374360|ref|YP_458422.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] gi|84787443|gb|ABC63625.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] Length = 455 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 223/459 (48%), Positives = 294/459 (64%), Gaps = 16/459 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLSP+++ +V AGY +PTPIQ + IP VL D+ GIAQTGTGKTASFVLPM+ Sbjct: 1 MKFADLGLSPELLKSVEKAGYTEPTPIQEQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ GR R MPR+LILEPTRELAAQVA+NFEKYG+N++L +ALLIGG+ Q K L Sbjct: 61 DIMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGENHDLKMALLIGGVQMGDQIKALN 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR++D F RGK+L+N E+LVIDEADRMLDMGFIP I+ I S +P RQT Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++K+S+ F+ NPKRIE ++T + I F Q K+ L + L Sbjct: 181 MLFSATMPPPIEKLSKQFMSNPKRIETTRAATTNKDI-TAFRVNVGQRQKRETL--EWLL 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D ++ I+F N+K V L SL+++GF IHG+IDQ R L FK+G I ++V Sbjct: 238 ENDHVETAIVFANRKTTVRELNKSLQRRGFKSGEIHGDIDQNQRNAELQRFKDGEINILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDI V HVFNFD P ++Y+HRIGRTGRAG G+AFT VA ED + ID + Sbjct: 298 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVAPEDAEAIDNV 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---STGFDRRKKNYSSQK 417 EKL E K+ D ++++ + + P P++ S D K +K Sbjct: 358 EKLTENKIKVFGKDDV-------RVELKDPSKGDEQKPKPKRERQSREEDEEKPARKPRK 410 Query: 418 SHIPLKESEKISKLQQDIQENDADSL---GFRGNMPAFM 453 +E K S ++ +E+ D++ + G P F+ Sbjct: 411 RRDESEERPKRSTGRKPPREDRDDAVPAGEWNGPQPGFL 449 >gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1] Length = 570 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/364 (56%), Positives = 270/364 (74%), Gaps = 3/364 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLSP+++ AV ++GY PTPIQ + IP+VL DV G AQTGTGKTASF LPM+ Sbjct: 8 MSFADLGLSPELLQAVEESGYTTPTPIQQQAIPVVLMGRDVLGCAQTGTGKTASFTLPMI 67 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GRA+ RMPR+LIL PTRELAAQVA+NF+KYGK + L AL+IGG Q L+ Sbjct: 68 EILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHKLNKALIIGGESMSDQIAILD 127 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR+LD F+RG++L+N++++LVIDEADRMLDMGFIP +Q I S++P RQT Sbjct: 128 RGVDVLIATPGRLLDMFDRGRILLNDVKVLVIDEADRMLDMGFIPDVQRIVSMLPKMRQT 187 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSAT+ E++K+++ FL NPK I V+ SSTA T+E F+A K+ L+ +++ Sbjct: 188 LFFSATLGPEIRKLADEFLMNPKEISVSAQSSTAVTVEQ-FLAVVDHIDKR-ETLRHIIR 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ +KN IFCN+K++V L SL+K GF V +HG++ Q +R++ L+ FK G +L+V Sbjct: 246 IEN-LKNAFIFCNRKRDVDILFKSLKKHGFDVVQMHGDMSQPARLESLAKFKSGEARLLV 304 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 SD+ ARG+DI V HVFNFDVP AE+Y+HRIGRTGRAG GKAFT+ + ED + + AI Sbjct: 305 CSDVVARGIDIKAVSHVFNFDVPIHAEDYVHRIGRTGRAGETGKAFTIASPEDGRFVAAI 364 Query: 361 EKLI 364 E LI Sbjct: 365 EGLI 368 >gi|307294408|ref|ZP_07574252.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] gi|306880559|gb|EFN11776.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] Length = 454 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 3/372 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ AV +AGY PTPIQ + IP VL D+ GIAQTGTGKTASFVLPM+ Sbjct: 1 MTFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GRAR MPR+LILEPTRELAAQVA+NFEKYGK + L +ALLIGG+ Q K LE Sbjct: 61 DILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLNMALLIGGVQMGDQLKALE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR++D F RGK+L+N +LVIDEADRMLDMGFIP I+ I + +P RQT Sbjct: 121 KGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPK IEV P++ + I V ++ KK L+ +L+ Sbjct: 181 LLFSATMPPVIKKLADRFLSNPKSIEVARPATASTNITQRLVKVDSR--KKREALRAMLE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D + + +IFCN+K V +L SL++ GF IHG+IDQ +R+ L F+ G++ ++V Sbjct: 239 AEDVL-SAVIFCNRKTTVRDLNKSLQRHGFKSGEIHGDIDQSARIAELERFRAGSVNILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDI V HVFNFD P ++Y+HRIGRTGRAG G A+T V +D + ID I Sbjct: 298 ASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTADDAEAIDNI 357 Query: 361 EKLIEKKVDWLN 372 +KLI+++++ ++ Sbjct: 358 QKLIKQQIETID 369 >gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 506 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 217/441 (49%), Positives = 290/441 (65%), Gaps = 11/441 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ AV + GY +PTP+Q IP VL D+ +AQTGTGKTASFVLPM+ Sbjct: 15 MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GR R RMPR+LILEPTRELAAQVA+NFEKYGK + L+++LLIGG+P Q LE Sbjct: 75 DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 134 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR+LD F RGK+L+++ E+LVIDEADRMLDMGFIP I+ I + +P +RQT Sbjct: 135 KGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQT 194 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPK+IE++ P++ I+ + + SKK L L Sbjct: 195 LLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPR-SKKKKLCDMLRA 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIFCN+K V L +LE+QGFSV IHG++ Q R L FK G I ++V Sbjct: 254 EKD--HTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLV 311 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLD+ + HVFNFDVP ++YIHRIGRTGR G G+A T V D + I AI Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAI 371 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 EKL+ ++ L + P + ++ ++ P +KS RK + +K+ Sbjct: 372 EKLMGVEIPRLGNRKKNTYPSKSEETVS----PKQAKPAQEKSATPSPRK---APRKTET 424 Query: 421 PLKESE-KISKLQQDIQENDA 440 P K E ++ ++ D +N A Sbjct: 425 PKKLPEDRLDSVESDFPKNQA 445 >gi|103486540|ref|YP_616101.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] gi|98976617|gb|ABF52768.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] Length = 458 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 221/459 (48%), Positives = 295/459 (64%), Gaps = 13/459 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ A+ ++GY +PT IQ IP VL D+ GIAQTGTGKTASFVLPM+ Sbjct: 1 MKFADLGLSDELLRAIDESGYSEPTAIQAGAIPSVLMMRDMIGIAQTGTGKTASFVLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GRAR MPR+LILEPTRELAAQVA+NFEKYGK + L++ALLIGG+ Q K LE Sbjct: 61 DILAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKALE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR++D F RGK+L+ +LVIDEADRMLDMGFIP I+NI + +P RQT Sbjct: 121 KGVDVLIATPGRLMDLFERGKILLTGCNLLVIDEADRMLDMGFIPDIENICTKLPANRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPK IEV P+S E IE V T + + L+ L++ Sbjct: 181 LLFSATMPPPIKKLADKFLSNPKTIEVARPASRNENIEQFVVKTSERGKRDT--LRGLIE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D + I+FCN+K V L SL++ G+ IHG++DQ SR+ L FK GTI ++V Sbjct: 239 AED-LSTAIVFCNRKTTVRELAKSLQRSGYRAGEIHGDMDQSSRIAELDRFKAGTINILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLD+ V HVFNFD P ++Y+HRIGRTGRAG G+AFTLV D + ID I Sbjct: 298 ASDVAARGLDVKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAQGRAFTLVTPSDDEAIDNI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE------KIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 +KL + ++G ++ P + + + AR ++ D K Sbjct: 358 QKLTGYNIP-VHGTATADAAPAKDEPREEREPRRESRPARGGR---GRAKPADPDAKRAD 413 Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453 +++ P K+ Q++D G+ G MP F+ Sbjct: 414 DKRNEAPRKKDAGRKPPPAARQDDDGSDDGWNGPMPGFL 452 >gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp. K31] gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31] Length = 678 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/373 (52%), Positives = 258/373 (69%), Gaps = 5/373 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++LGLSP + AV D GY TPIQ IP+ L DV GIAQTGTGKTA+F LP++ Sbjct: 3 EFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLID 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L GRA+ RMPR L++ PTRELA QVA +FEKY K L+ ALLIGG+ F Q KKL+R Sbjct: 63 KLMNGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+LDHF RGKLLM ++ LV+DEADRMLDMGFIP I+ I + P +QTL Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+ ++++ FL++P RIE + P++T E I V + K L + L Sbjct: 183 FFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALRALIE 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ GI+FCN+K V + SL+ GF AIHG++DQ R K L+ F++G+++++VA Sbjct: 243 KAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLKILVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G + LV D K D + Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGFDKVV 362 Query: 362 KLI-----EKKVD 369 KLI E+K+D Sbjct: 363 KLIGSTPTEEKLD 375 >gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264] gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 521 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/379 (52%), Positives = 264/379 (69%), Gaps = 9/379 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ LGLSP + AV+D GY TPIQ + IP+ L DV GIAQTGTGKTA+F LP++ Sbjct: 3 EFSALGLSPTTLQAVIDTGYTTATPIQAQAIPVALAGRDVLGIAQTGTGKTAAFTLPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L KGRAR RMPR L+L PTRELA QVA +FEKY K L+ LLIGG+ Q L + Sbjct: 63 RLSKGRARARMPRALVLAPTRELADQVAMSFEKYAKGTKLSWVLLIGGVSMGDQVAALNK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+LD F RGK+++N +E++V+DEADRMLDMGFIP I+ I L P RQTL Sbjct: 123 GVDVLIATPGRLLDLFERGKMMLNGVELMVVDEADRMLDMGFIPDIERIFKLTPPKRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLLQ 240 FSATM E+ ++++ FL++P RIE + P+ TAETI V + K K A L++L+ Sbjct: 183 FFSATMPPEITRLTQAFLKDPTRIEASRPAMTAETITQYLVRIPSSDPKAKRAALRELMA 242 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D ++NGI+FCN+K V + SL++ GF IHG++DQ R K L++F+ G ++++V Sbjct: 243 RAD-VRNGIVFCNRKSEVDVVAKSLKQHGFDAAPIHGDLDQSLRTKTLADFRSGALKILV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIPDV HVFN+DV + A++Y+HRIGRTGRAG+ G+AF +V D K +D + Sbjct: 302 ASDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIVTPADDKSLDKV 361 Query: 361 EKLIEKK-------VDWLN 372 KLI+ +DW N Sbjct: 362 MKLIKMSPEELVLDLDWSN 380 >gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53] gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53] Length = 498 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 198/388 (51%), Positives = 272/388 (70%), Gaps = 6/388 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D+ L PKV+ AV + GY PTPIQ IP L+ DV GIAQTGTGKTA+F LPM+T+ Sbjct: 4 FSDMNLDPKVLKAVAETGYDTPTPIQDGAIPPALEGRDVLGIAQTGTGKTAAFTLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K LT ALLIGG F+ Q+K +++G Sbjct: 64 LGRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQDKLIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDH RGKL++ +++I+V+DEADRMLDMGFIP I+ I PFTRQTL Sbjct: 124 VDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----ATYAQYSKKCALLQQ 237 FSATM E+++++ FL NP ++EV ++T I+ V A + ++K ALL+ Sbjct: 184 FSATMAPEIERITNTFLSNPAKVEVARAATTNVNIKQGVVMFRASAKLREATEKRALLRA 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ D N IIFCN+K +V + SL K G+ IHG+++Q R + L +F++ + Sbjct: 244 LINAEGDACSNAIIFCNRKADVDVVAKSLNKYGYDAAPIHGDLEQSHRTRTLESFRDNKL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A + + D K+ Sbjct: 304 RFLVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGVAIMICSGRDEKN 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 ++ +E+L++ + L+ L P E+ Sbjct: 364 LEDVERLVQNPIPRLDNPLGVTAPVAEE 391 >gi|296282684|ref|ZP_06860682.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354] Length = 472 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 208/368 (56%), Positives = 262/368 (71%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS K++ AV AGY +PTPIQ + IP VL D+ GIAQTGTGKTASFVLPM+ Sbjct: 1 MKFADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GR R MPR+LIL PTRELAAQVA+NFEKYGK ++L +ALLIGG+ Q K L Sbjct: 61 DILASGRRRALMPRSLILAPTRELAAQVAENFEKYGKQHDLQLALLIGGVQMGDQVKALN 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR++D F RGK+L+N E+LVIDEADRMLDMGFIP I+ I S +P RQT Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIETICSKLPEPRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPKRIEV+ +ST E I + A+ ++ L+ LL Sbjct: 181 LLFSATMPPPIEKLAQKFLTNPKRIEVSRAASTNENITAFKIPVKAREKRET--LRWLL- 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D ++ IIF N+K V + SL+ GF+ IHG++DQ SR+ L+ FK G + ++V Sbjct: 238 ANDHVETAIIFANRKTTVREINKSLQSHGFASGEIHGDMDQSSRIAELNRFKAGEVNILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDI V HVFNFD P ++Y+HRIGRTGRAG G+AFT V +D + I + Sbjct: 298 ASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVTDDDAEAIANV 357 Query: 361 EKLIEKKV 368 EKL E K+ Sbjct: 358 EKLTESKI 365 >gi|326387193|ref|ZP_08208803.1| DEAD/DEAH box helicase-like protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208374|gb|EGD59181.1| DEAD/DEAH box helicase-like protein [Novosphingobium nitrogenifigens DSM 19370] Length = 481 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 222/457 (48%), Positives = 297/457 (64%), Gaps = 10/457 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ +V DAGY +PTPIQ + IP VL D+ GIAQTGTGKTASFVLPM+ Sbjct: 22 MKFADLGLSDELLKSVYDAGYDEPTPIQAQAIPSVLMMRDLIGIAQTGTGKTASFVLPMI 81 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L GR R MPR+LILEPTRELAAQVA+NFEKYGKN++L +ALLIGG+ Q K L Sbjct: 82 DVLAHGRRRALMPRSLILEPTRELAAQVAENFEKYGKNHDLRMALLIGGVQMGDQVKALS 141 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR++D F RGK+L+ E+LVIDEADRMLDMGFIP I++I S +P TRQT Sbjct: 142 DGVDVLIATPGRLMDLFERGKILLTGCELLVIDEADRMLDMGFIPDIESICSKLPTTRQT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPK IEV P+S I VA ++ +K +L+ LL+ Sbjct: 202 LLFSATMPPPIKKLADRFLSNPKYIEVARPASANINIVQHKVACASRDKRK--VLRHLLR 259 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + I+F N+K V +L SL++ GF+ IHG++DQ R+ L FK+G I ++ Sbjct: 260 T-DNVSTAIVFANRKTTVRDLAKSLKRHGFAAGEIHGDMDQPQRLAELQRFKDGQINILC 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLD+ V HVFNFD P ++Y+HRIGRTGR G G+AFTLV+ ED + I + Sbjct: 319 ASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRIGRTGRGGASGRAFTLVSAEDAEAIANV 378 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR----KNNPIPQKSTGFDRRKKNYSSQ 416 EKL + + DL EK A H + K + + + G D K+ ++ Sbjct: 379 EKLTGIPIPVITVDLGKDESEDEKPVRAPRKHTKDKPAKTDEVLPRIAG-DVETKSRAAA 437 Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFM 453 K P K + + + + E + + G +P F+ Sbjct: 438 KP--PRKSERREVRQPEPVFEPVGEPSAWNGPIPGFL 472 >gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter segnis ATCC 21756] gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC 21756] Length = 524 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/368 (52%), Positives = 254/368 (69%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+DLGLSP + AV D GY TPIQ + IP+ L DV GIAQTGTGKTA+F LP++ Sbjct: 3 EFSDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLID 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ GRA+ RMPR L++ PTRELA QVA +FEKY K L+ ALLIGG+ F Q KKL+R Sbjct: 63 KLQSGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+LDHF RGKLLM ++ LV+DEADRMLDMGFIP I+ I + P +QTL Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+ ++++ FL++P RIEV P++T I V + K L + L Sbjct: 183 FFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIE 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ GI+FCN+K V + SL+ G+ IHG++DQ RMK L++F+ G ++++VA Sbjct: 243 KAQIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G + LV D K D + Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKGFDKVV 362 Query: 362 KLIEKKVD 369 KLI D Sbjct: 363 KLIGSTPD 370 >gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2] gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2] Length = 484 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/420 (48%), Positives = 282/420 (67%), Gaps = 16/420 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+PKV+ AV + GY PTPIQ I L+ DV GIAQTGTGKTA+F LPM+T+ Sbjct: 4 FSDLNLAPKVLKAVTETGYDTPTPIQAGAIAPALEGRDVLGIAQTGTGKTAAFTLPMITL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+L+L PTRELAAQVA+NF+ Y K L+ ALLIGG F+ Q+K +++G Sbjct: 64 LGRGRARARMPRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQDKIIDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDH RGKL++ +++I+V+DEADRMLDMGFIP I+ I PFTRQTL Sbjct: 124 VDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----ATYAQYSKKCALLQQ 237 FSATM E+++++ FL NP +IEV ++T I+ V A + S+K LL++ Sbjct: 184 FSATMAPEIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPSEKRELLRK 243 Query: 238 LLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ + N IIFCN+K +V + SL K G+ IHG++DQ R K L F++ + Sbjct: 244 LIDAEGEACTNAIIFCNRKSDVDIVAKSLNKYGYQAAPIHGDLDQSHRTKTLDKFRDNEL 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VASD+AARGLDIP V HVFNFDVP+ AE+Y+HRIGRTGRAGR G A + D K+ Sbjct: 304 RILVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGTAIMICVPRDEKN 363 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 ++ +E+L+++ + L+ P + + A+ R + RRKK+ + + Sbjct: 364 LEDVERLVKETIPRLDAPGGKAAPATAEPEKAEEKPKRTRS----------RRKKDDAPE 413 >gi|16126090|ref|NP_420654.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15] gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000] gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter crescentus CB15] gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000] Length = 517 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 198/378 (52%), Positives = 256/378 (67%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F DLGLSP + AV D GY TPIQ + IP+ L DV GIAQTGTGKTA+F LP++ Sbjct: 3 EFTDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLID 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ GRA+ RMPR L++ PTRELA QVA +FEKY K L+ ALLIGG+ F Q KKL+R Sbjct: 63 RLQSGRAKARMPRALVIAPTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQEKKLDR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+LDHF RGKLLM ++ LV+DEADRMLDMGFIP I+ I + P +QTL Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+ ++++ FL++P RIEV P++T I V + K L + L Sbjct: 183 FFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIE 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ GI+FCN+K V + SL+ G+ IHG++DQ RMK L++F+ G ++++VA Sbjct: 243 KAGIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G + LV D K D + Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKGFDKVI 362 Query: 362 KLIEKKVDWLNGDLSSLN 379 KLI D DL N Sbjct: 363 KLIGSTPDEEKLDLDYSN 380 >gi|114797080|ref|YP_759424.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444] gi|114737254|gb|ABI75379.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444] Length = 536 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/367 (54%), Positives = 265/367 (72%), Gaps = 2/367 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD GL+ ++ AV ++GY PTPIQ + IP +L DV G+AQTGTGKTA+FVLPM+ Sbjct: 6 FADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQR 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L GRAR RMPR LIL PTRELAAQVA+NFEKYGK LT+ALLIGG+ F+ Q L+RG Sbjct: 66 LSTGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRG 125 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR++D F+RGKLLM +E L+IDEADRMLDMGFIP I+ I + +P RQTLL Sbjct: 126 VDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLL 185 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLLQS 241 FSAT ++Q++++ F ++PK+IEV P+ TAETI V K + L++++++ Sbjct: 186 FSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEA 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + +KNGI+FCN+K V + SL K G IHG++ Q R + L F++G ++L+VA Sbjct: 246 TN-VKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVA 304 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIPDVGHVFNF P + E+Y+HRIGRTGRAGR G+++T+V D K + Sbjct: 305 SDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVV 364 Query: 362 KLIEKKV 368 K+I+K V Sbjct: 365 KMIKKDV 371 >gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB 48] gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB 48] Length = 501 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 226/501 (45%), Positives = 300/501 (59%), Gaps = 57/501 (11%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL+P ++ AV D GY PT IQ + IP+ L DV GIAQTGTGKTA+F LPM+ Sbjct: 4 FTDLGLNPDILKAVADTGYDTPTAIQEQAIPIALIGLDVLGIAQTGTGKTAAFTLPMIEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L GR+R RMPR ++L PTRELA QVA+ FEKY K L ALLIGG+ Q KL++G Sbjct: 64 LASGRSRARMPRAIVLAPTRELADQVAEAFEKYAKYCKLNWALLIGGVSMADQVAKLDKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LD F R K+++N ++++V+DEADRMLDMGFIP I+ I L P +RQTL Sbjct: 124 VDVLIATPGRLLDLFERSKVMLNGVQLMVVDEADRMLDMGFIPDIERIFKLTPPSRQTLF 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL---- 238 FSATM E+ +++E FL+NP RIEV+ P++T E I + SK A ++L Sbjct: 184 FSATMPPEITRLTEQFLKNPVRIEVSRPATTNENITQYVYRVPSGDSKLLAKAKRLALRT 243 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L Q + NGI+FCN+K +V + SL GF+ IHG++DQ RMK L F+ G ++L Sbjct: 244 LIGQLEINNGIVFCNRKTDVDIVAKSLSVHGFNAAPIHGDLDQSLRMKTLDAFRSGELKL 303 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VASD+AARGLDIP V HVFNFDVP+ A++Y+HRIGRTGRAGR G+A+ ++A D K+ D Sbjct: 304 LVASDVAARGLDIPSVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAYLILAPNDEKNYD 363 Query: 359 AIEKLIEKK-------VDWLNGDLSSLNPPLEKIDIAQHNHARKNN-------------- 397 + KLI+K+ VDW L+ P EK + ++ Sbjct: 364 KVLKLIKKEPNTLELDVDW--SPLADARPEREKPARGRGERTERDRSARPRRERGRKGES 421 Query: 398 -------------------PIPQKSTGFDRRKKNYSSQKSHIPLKESEKIS-----KLQQ 433 P P+K T RR+K S + P ++ +S K + Sbjct: 422 AVEAVTEAVVPEEIVVDAAPPPEKKT---RRRK---STAADTPPPRAKAVSDDFPLKDNE 475 Query: 434 DIQENDADSLGFRGNMPAFML 454 D D GF G++PAFML Sbjct: 476 DSLPKGPDCQGFGGHVPAFML 496 >gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta ATCC 11568] gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta ATCC 11568] Length = 490 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 202/389 (51%), Positives = 267/389 (68%), Gaps = 11/389 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ LGLSP + AV D GY TPIQ + IP+ L DV GIAQTGTGKTA+F LPM+ Sbjct: 3 EFSKLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPMVD 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L GRAR RMPR ++L PTRELA QVA++F KY K L LLIGG+ Q L + Sbjct: 63 RLASGRARARMPRAVVLAPTRELADQVAESFAKYAKGTRLNWVLLIGGVSMGDQIAALNK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+LD F+RGK+L+ +E++V+DEADRMLDMGFIP I+ I L P RQTL Sbjct: 123 GVDVLIATPGRLLDLFDRGKMLLTGVELMVVDEADRMLDMGFIPDIERIFKLTPPRRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240 FSATM E+ ++++ FL++P RIEV P++TA+TI +H + K L+ L++ Sbjct: 183 FFSATMPPEITRLTQQFLKDPTRIEVARPATTADTITQHITRLPSSDPKAKRTALRALVE 242 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D ++NGI+FCN+K V + SL+ GF+ IHG++DQ RMK LS+F+ G ++L+V Sbjct: 243 RGD-VQNGIVFCNRKSEVDIVAKSLQVHGFNAAPIHGDLDQSLRMKTLSDFRSGELKLLV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDIP V HVFN+DVP+ A++Y+HRIGRTGRAGR G+AF +V D K +D + Sbjct: 302 ASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRLGEAFMIVTPADDKSLDKV 361 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389 KLI+K+ + PL+ ID A Sbjct: 362 LKLIKKE---------PVELPLDDIDFAS 381 >gi|114327981|ref|YP_745138.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1] gi|114316155|gb|ABI62215.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1] Length = 763 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/362 (56%), Positives = 257/362 (70%), Gaps = 3/362 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V A+ + GY+ PTPIQ + IP+VL DV G AQTGTGKTASF LPM+ I Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDI 284 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RAR RMPR+LILEPTRELA QVA+NF KYG+ L ALLIGG Q L +G Sbjct: 285 LSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLIGGESMNDQRDVLSKG 344 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR++D F+RG LL+ + ILVIDEADRMLDMGFIP ++ I SL+P RQTL Sbjct: 345 VDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTLF 404 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++++++ FLQNPK I V P+S A TI A + K+ A L+ LL+ Q Sbjct: 405 FSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGL-ALVGEMDKRKA-LRHLLR-Q 461 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + ++N +IFCN+K++V L SL K GF+ +HG++ Q R L FK G++QL+V S Sbjct: 462 EKVQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCS 521 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HVFNFDVP AE+Y+HRIGRTGRAGR G AFTL + +D +DAIEK Sbjct: 522 DVAARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEK 581 Query: 363 LI 364 LI Sbjct: 582 LI 583 >gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957] gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957] Length = 560 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 204/378 (53%), Positives = 265/378 (70%), Gaps = 5/378 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS ++ V +AGYV PTPIQ + IP+VL DV G AQTGTGKTASFVLPM+ I Sbjct: 107 FEDLGLSEALLRGVAEAGYVHPTPIQEQAIPVVLMGRDVMGCAQTGTGKTASFVLPMMDI 166 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RA+ RMPR+LILEPTRELA QVA+NF KYG + L ALLIGG Q L++G Sbjct: 167 LAGSRAKARMPRSLILEPTRELALQVAENFVKYGTHMKLNHALLIGGESMSDQRDVLDKG 226 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LD F RG++++ + ++LVIDEADRMLDMGFIP ++ I SL+P RQTL Sbjct: 227 VDVLIATPGRLLDLFERGRVMLADCKVLVIDEADRMLDMGFIPDVERIVSLLPPLRQTLF 286 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++K+++ FLQNPK I V+ P+S A TI + Q K L++L++SQ Sbjct: 287 FSATMAPEIRKLADAFLQNPKTISVSAPASVATTITAGLA--FVQPEDKRRALRRLIRSQ 344 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++N +IFCN+K++V L SL K GF A+HG++ Q R L FK G +QL+V S Sbjct: 345 D-VQNALIFCNRKRDVDILHKSLSKHGFKAGALHGDLPQSVRFATLEKFKAGELQLLVCS 403 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HV+NFDVP R E+Y+HRIGRTGRAGR G A+T+ +D+K + AIE Sbjct: 404 DVAARGIDIGGLSHVYNFDVPFRDEDYVHRIGRTGRAGREGHAYTIATADDVKLVAAIEA 463 Query: 363 LIEKKVDWLNGDLSSLNP 380 L K + + ++ L P Sbjct: 464 LTGKPIPRI--EIEGLEP 479 >gi|304319730|ref|YP_003853373.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis HTCC2503] gi|303298633|gb|ADM08232.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis HTCC2503] Length = 460 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 213/389 (54%), Positives = 277/389 (71%), Gaps = 7/389 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL K++ A+ ++GY PTPIQ IP L+ DV GIAQTGTGKTASFVLP++ Sbjct: 16 FSELGLDTKILEALTESGYTHPTPIQADAIPEALRGRDVLGIAQTGTGKTASFVLPVIHR 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +GRAR RMPR+LIL PTRELAAQV++ FEKYGKN+ L++ALLIGG+ F Q+ KL RG Sbjct: 76 LARGRARARMPRSLILAPTRELAAQVSEQFEKYGKNHKLSMALLIGGVSFADQDAKLTRG 135 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LDH RGKLL+ +E++V+DEADRMLDMGFIP ++ I L PFTRQTL Sbjct: 136 VDVLIATPGRLLDHHERGKLLLTGLEVMVVDEADRMLDMGFIPDLERIFKLTPFTRQTLF 195 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLLQS 241 FSATM E+Q++++ FL P RIEV P++TA+TI + K K A L+ L+++ Sbjct: 196 FSATMPPEIQRLTDQFLSAPARIEVAKPATTAKTITQRIARLPSGEDKLKRAALRHLVET 255 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + +KNGIIFCN+KKNV + SL++ GF IHG++ Q R + L F++G ++L+VA Sbjct: 256 AENLKNGIIFCNRKKNVDVIAKSLQEHGFDARPIHGDLPQSFRTETLQMFRDGGLKLLVA 315 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI- 360 SD+AARGLDIPDV HVFNF VP A++Y+HRIGRTGRAGR G A LV +D K DA+ Sbjct: 316 SDVAARGLDIPDVSHVFNFSVPINADDYVHRIGRTGRAGRLGHAVMLVTPDDGKAFDAVL 375 Query: 361 -----EKLIEKKVDWLNGDLSSLNPPLEK 384 +K+ E + L D + P EK Sbjct: 376 KVTGLDKIEEHDISALLDDWNGAARPPEK 404 >gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3] gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3] Length = 545 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/366 (53%), Positives = 256/366 (69%), Gaps = 4/366 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ LGLSP + AV D GY TPIQ + IP+ L DV GIAQTGTGKTA+F LP++ Sbjct: 3 EFSQLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPLVE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L GRAR RMPR ++L PTRELA QVA++F KY K LT LLIGG+ Q L + Sbjct: 63 RLASGRARARMPRAIVLAPTRELADQVAESFAKYAKGTKLTWVLLIGGVSMGDQVAALNK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+LD F RGK+L+ +EI+V+DEADRMLDMGFIP I+ I L P RQTL Sbjct: 123 GVDVLIATPGRLLDLFERGKMLLTGVEIMVVDEADRMLDMGFIPDIERIFKLTPPRRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKKCALLQQLL 239 FSATM E+ +++ FL++P RIE + P+ TA+TI V T +K+ AL + L Sbjct: 183 FFSATMPPEITRLTAAFLKDPTRIEASRPAMTADTITQYIVRIPTSDPKAKRAAL--RAL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ ++NGI+FCN+K V + SL+ GF AIHG++DQ R K L++F+ G ++++ Sbjct: 241 MSRTDVRNGIVFCNRKSEVDIVAKSLKTHGFDAAAIHGDLDQSHRTKTLADFRSGALKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLDIPDV HVFN+DV + A++Y+HRIGRTGRAG+ G+AF +V D K +D Sbjct: 301 VASDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIVTPADDKSLDK 360 Query: 360 IEKLIE 365 + KLI+ Sbjct: 361 VLKLIK 366 >gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1] gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum AMB-1] Length = 583 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/362 (54%), Positives = 263/362 (72%), Gaps = 3/362 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P+++ A+ ++GY PTPIQ + IP+VL DV G AQTGTGKTASF LPM+ I Sbjct: 40 FEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEI 99 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L GRA+ RMPR+LIL PTRELAAQVA+NF+KYGK + L AL+IGG Q L+RG Sbjct: 100 LAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVALLDRG 159 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LD F RG++L+N++++LVIDEADRMLDMGFIP ++ I L+P RQTL Sbjct: 160 VDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKIRQTLF 219 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++++++ FL NPK ++V+T +S A T+ A + K+ L+ L++ + Sbjct: 220 FSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQAL-AVVEEIDKR-ETLRHLIRIE 277 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + +KN IFCN+K++V L SL+K GF V +HG++ Q +R + L FK+G +LMV S Sbjct: 278 E-VKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEARLMVCS 336 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI V HVFNFDVP AE+Y+HRIGRTGRAG G AFT+ + +D + + AIE Sbjct: 337 DVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGHAFTIASPDDGRFVGAIEA 396 Query: 363 LI 364 +I Sbjct: 397 MI 398 >gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 539 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 221/478 (46%), Positives = 286/478 (59%), Gaps = 25/478 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGLS + A+ + GY PTPIQ + IP +L DV G+AQTGTGKTASF LPML I Sbjct: 50 FSELGLSAPIQQAIEEMGYRHPTPIQAQAIPYILMGRDVLGVAQTGTGKTASFTLPMLEI 109 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RAR RMPR+LILEPTRELA QVA+NF YGK+ LT ALLIGG Q + L RG Sbjct: 110 LSGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEALNRG 169 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR++D F RG LL+ ++LVIDEADRMLDMGFIP I+ I S++ RQTL Sbjct: 170 VDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPIRQTLF 229 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++++++ FL NPK I V+ PSS A TIE V ++ L++LL+ Sbjct: 230 FSATMAPEIRRLADMFLHNPKEITVSRPSSVASTIETGLVIVEEDDKRRA--LRKLLRES 287 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D M+N IIFCN+K++V LC SL K GFS A+HG++ Q R L FK G ++++V S Sbjct: 288 D-MQNAIIFCNRKRDVDVLCKSLLKHGFSAGALHGDLPQSLRFSTLEAFKSGELKILVCS 346 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HVFNFD+P AE+Y+HRIGRTGRAGR G A++L + +AIEK Sbjct: 347 DIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYSLATPYEQPLAEAIEK 406 Query: 363 LIEKKVDWL------NGDLSSLNPPLEKIDIAQHNHARKN--NPIPQKSTGFDRRKKNYS 414 L K + L + S P + + R P P T RK Sbjct: 407 LTGKPIVRLEVKGIDQTEWSDEPRPRGRKRGGKPAEVRTTPQAPAPTGKTSAPSRKPAVE 466 Query: 415 SQKSHIPLK--------------ESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458 S+ + P + ++ N+ GF G++PAFML R Sbjct: 467 SRNAVAPTAVSATAAPPARPASPPRHAATAHAREEHGNERPQAGFGGDIPAFMLLPRR 524 >gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1] gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1] Length = 508 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 200/366 (54%), Positives = 257/366 (70%), Gaps = 3/366 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGLS + A+ + GY PTPIQ + IP VL DV G+AQTGTGKTASF LPML I Sbjct: 31 FSELGLSEPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEI 90 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ RAR RMPR+LILEPTRELA QVA+NF YGK+ LT ALLIGG Q + L RG Sbjct: 91 LQGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEVLNRG 150 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR++D F RG LL+ ++LVIDEADRMLDMGFIP I+ I S++ RQTL Sbjct: 151 VDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPLRQTLF 210 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++++++ FL+NPK I V+ PSS A TIE A+ ++ L++LL+ Sbjct: 211 FSATMAPEIRRLADAFLRNPKEITVSRPSSVASTIETGLAIVDAKDKRRA--LRKLLREA 268 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D M+N I+FCN+K++V LC SL K GFS A+HG++ Q R L FK G ++++V S Sbjct: 269 D-MQNAIVFCNRKRDVDVLCKSLIKHGFSAGALHGDLAQSVRFSTLEAFKSGELKILVCS 327 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HVFNFD+P AE+Y+HRIGRTGRAGR G A++L ++ AIEK Sbjct: 328 DIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYSLATPDEEALAQAIEK 387 Query: 363 LIEKKV 368 L K + Sbjct: 388 LTGKPI 393 >gi|329114670|ref|ZP_08243429.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001] gi|326696150|gb|EGE47832.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001] Length = 637 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 223/464 (48%), Positives = 288/464 (62%), Gaps = 19/464 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LS ++ A+ D GY PTPIQ + IP +L DV G+AQTGTGKTASF LPML I Sbjct: 155 FADLELSEPLLRAISDMGYTHPTPIQAQAIPAILMARDVMGVAQTGTGKTASFTLPMLEI 214 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RAR RMPR+LILEPTRELA QVA+NF YGK L ALLIGG Q + L RG Sbjct: 215 LADSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRG 274 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LD F RG L++N+ ILVIDEADRMLDMGFIP I+ I L+P RQTLL Sbjct: 275 VDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLL 334 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++K+++ FL +PK I V SS A TI V +YSK+ L+QLL+ Sbjct: 335 FSATMAPTIRKLADTFLHSPKEITVARQSSVATTITTGIV-VVDEYSKR-ETLRQLLKDP 392 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++N I+FCN+K++V L SL K GFS A+HG++ Q R L FK ++++V S Sbjct: 393 -ALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCS 451 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HVFNFD+P AE+Y+HRIGRTGRAGR G A+++ D +AIEK Sbjct: 452 DVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIEK 511 Query: 363 LIEKKVDWLNGD-------LSSLNPP---LEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 L K++ + D PP K Q N R+ NP P ++++ Sbjct: 512 LTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPHTPQRNRERE-NPAP---AAREQQQPE 567 Query: 413 YSSQKSHIPLKESEKISKLQQD--IQENDADSLGFRGNMPAFML 454 Q++ P ++ + ++ Q+D D GF +PAFML Sbjct: 568 AKLQQTARPERQPTRNTRHQRDEIPPAPGGDVQGFGDMVPAFML 611 >gi|332186551|ref|ZP_08388295.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17] gi|332013534|gb|EGI55595.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17] Length = 469 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 210/371 (56%), Positives = 265/371 (71%), Gaps = 1/371 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ V DAGY +PTPIQ IP VL D+ GIAQTGTGKTASFVLPM+ Sbjct: 1 MSFADLGLSDELLKTVTDAGYTEPTPIQASAIPSVLMMRDIIGIAQTGTGKTASFVLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GR+R RMPR+LILEPTRELAAQVA+NFEKYG N+ L++ALLIGG+ Q K LE Sbjct: 61 DILAHGRSRARMPRSLILEPTRELAAQVAENFEKYGANHKLSMALLIGGVSMGDQIKALE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR++D F RG +L+ +LVIDEADRMLDMGFIP I+ I + +P RQT Sbjct: 121 KGVDVLIATPGRLMDLFQRGNILLTGCSMLVIDEADRMLDMGFIPDIEEICTKLPKQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL+NPK IEV P+ST I V Q +K L+QLL+ Sbjct: 181 LLFSATMPPPIKKLADKFLENPKMIEVARPASTNINITQFVVPVAPQSFEKRKRLRQLLK 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD ++ IIFCN+K V L SL++ GF IHG+++Q R+ L FK G + ++V Sbjct: 241 -QDEVRTAIIFCNRKTTVRELNKSLKQHGFRSGEIHGDMEQPQRLAELDLFKRGEVNILV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDI V HVFNFD P ++Y+HRIGRTGR G G A+T VA +D ++ID I Sbjct: 300 ASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRGGATGTAYTFVAPDDAENIDNI 359 Query: 361 EKLIEKKVDWL 371 EKL +++D L Sbjct: 360 EKLTGQRIDRL 370 >gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium cryptum JF-5] gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5] Length = 503 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 203/378 (53%), Positives = 265/378 (70%), Gaps = 5/378 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLS ++ A+ + GY+ PTPIQ + IP VL DV G AQTGTGKTASF LPML I Sbjct: 21 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDI 80 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RAR RMPR+LILEPTRELA QVA+NF +YGK+ L ALLIGG Q L RG Sbjct: 81 LSGSRARARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRG 140 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR++D F RG LL++++ +LVIDEADRMLDMGFIP I+ I SL+P RQTL Sbjct: 141 VDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLF 200 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++++++ FL NPK+I V+ P++ A TI + A + K+ A L++L++++ Sbjct: 201 FSATMAPEIRRLADAFLSNPKQITVSRPATVATTITEGL-SLVATHDKREA-LRRLIRTE 258 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++N ++FCN+K++V LC SL + FS +HG++ Q +R L FK G I+L+V S Sbjct: 259 D-VQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCS 317 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HVFNFDVP+ AE+Y+HRIGRTGRAG G+A TL D +DAIE Sbjct: 318 DVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADRAAVDAIEL 377 Query: 363 LIEKKVDWLNGDLSSLNP 380 LI + L D L+P Sbjct: 378 LIGHPIPRLAVD--GLDP 393 >gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301] gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301] Length = 510 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 203/378 (53%), Positives = 266/378 (70%), Gaps = 5/378 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLS ++ A+ + GY+ PTPIQ + IP VL DV G AQTGTGKTASF LPML I Sbjct: 28 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDI 87 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RAR RMPR+LILEPTRELA QVA+NF +YGK+ L ALLIGG Q L RG Sbjct: 88 LSGSRARARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRG 147 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR++D F RG LL++++ +LVIDEADRMLDMGFIP I+ I SL+P RQTL Sbjct: 148 VDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLF 207 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++++++ FL NPK+I V+ P++ A TI ++ A + K+ A L++L++++ Sbjct: 208 FSATMAPEIRRLADAFLSNPKQITVSRPATVATTITEG-LSLVATHDKREA-LRRLIRTE 265 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++N ++FCN+K++V LC SL + FS +HG++ Q +R L FK G I+L+V S Sbjct: 266 D-VQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCS 324 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HVFNFDVP+ AE+Y+HRIGRTGRAG G+A TL D +DAIE Sbjct: 325 DVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADRAAVDAIEL 384 Query: 363 LIEKKVDWLNGDLSSLNP 380 LI + L D L+P Sbjct: 385 LIGHPIPRLAVD--GLDP 400 >gi|258542730|ref|YP_003188163.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01] gi|256633808|dbj|BAH99783.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01] gi|256636867|dbj|BAI02836.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03] gi|256639920|dbj|BAI05882.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07] gi|256642976|dbj|BAI08931.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22] gi|256646031|dbj|BAI11979.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26] gi|256649084|dbj|BAI15025.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32] gi|256652071|dbj|BAI18005.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655128|dbj|BAI21055.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12] Length = 636 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 219/468 (46%), Positives = 286/468 (61%), Gaps = 16/468 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LS ++ A+ D GY PTPIQ + IP +L DV G+AQTGTGKTASF LPML I Sbjct: 157 FADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPMLEI 216 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RAR RMPR+LILEPTRELA QVA+NF YGK L ALLIGG Q + L RG Sbjct: 217 LSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRG 276 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LD F RG L++N+ ILVIDEADRMLDMGFIP I+ I L+P RQTLL Sbjct: 277 VDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLL 336 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++K+++ FL +PK I V SS A TI V +YSK+ L+QLL+ Sbjct: 337 FSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTGIV-VVDEYSKR-ETLRQLLKDP 394 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++N I+FCN+K++V L SL K GFS A+HG++ Q R L FK ++++V S Sbjct: 395 -ALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCS 453 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HVFNFD+P AE+Y+HRIGRTGRAGR G A+++ D +AIEK Sbjct: 454 DVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIEK 513 Query: 363 LIEKKVDWLNGD-------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 L K++ + D PP + + + N +P ++ Sbjct: 514 LTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPRTPQRERENAVPTPR----EQQPEAKP 569 Query: 416 QKSHIPLKESEKISKLQQD--IQENDADSLGFRGNMPAFMLPKNRGKL 461 Q++ P ++ + ++ Q+D D GF +PAFML R + Sbjct: 570 QQTARPERQPTRNTRHQRDEIPPAPGGDVQGFGDMVPAFMLLPRRSSV 617 >gi|149184420|ref|ZP_01862738.1| DNA and RNA helicase [Erythrobacter sp. SD-21] gi|148831740|gb|EDL50173.1| DNA and RNA helicase [Erythrobacter sp. SD-21] Length = 359 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/347 (56%), Positives = 253/347 (72%), Gaps = 3/347 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS ++ AV +AGY +PTPIQ + IP +L D+ GIAQTGTGKTASFVLPM+ Sbjct: 1 MSFADLGLSEDLLKAVEEAGYTEPTPIQAQAIPPILMMKDIIGIAQTGTGKTASFVLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ GR R MPR+LIL PTRELAAQVA+NFEKYGKN++L +ALLIGG+ Q K L Sbjct: 61 DVMASGRRRALMPRSLILAPTRELAAQVAENFEKYGKNHDLKLALLIGGVQMGDQIKALN 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR++D F RGK+L+N E+LVIDEADRMLDMGFIP I+ I S +P RQT Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++K+++ FL NPKRIEV+ ++T + I + ++ KK L+ LL+ Sbjct: 181 MLFSATMPPPIEKLAKKFLDNPKRIEVSRAATTNKDITAFKIPVESR--KKRETLRWLLR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D ++ IIF N+K V L SL++ GF+ IHG++DQ SR+K L FK G + ++V Sbjct: 239 N-DHVETAIIFANRKTTVRELNKSLQQHGFASSEIHGDMDQSSRIKELDRFKNGEVNILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 ASD+AARGLD+ V HVFNFD P ++Y+HRIGRTGRAG G+AFT Sbjct: 298 ASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFT 344 >gi|87199313|ref|YP_496570.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM 12444] gi|87134994|gb|ABD25736.1| DEAD/DEAH box helicase-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 464 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/368 (56%), Positives = 266/368 (72%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ +VLDAGY +PTPIQ + IP VL D+ GIAQTGTGKTA FVLPM+ Sbjct: 1 MKFADLGLSDELLKSVLDAGYDEPTPIQAQAIPAVLMMKDIIGIAQTGTGKTAGFVLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GR R MPR+LILEPTRELAAQVA+NFEKYGKN++L +ALLIGG+ Q K L+ Sbjct: 61 DILAHGRRRALMPRSLILEPTRELAAQVAENFEKYGKNHDLKMALLIGGVQMGDQVKALQ 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR++D F RGK+L+ E+LVIDEADRMLDMGFIP I+NI S +P TRQT Sbjct: 121 EGVDVLIATPGRLMDLFERGKILLTGCEMLVIDEADRMLDMGFIPDIENICSKLPTTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPK IEV P++T I V + + +K +L+ LL+ Sbjct: 181 LLFSATMPPPIKKLADKFLSNPKSIEVARPAATNTNIAQFKVRSTTR--QKREVLRHLLR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + IIF N+K V L SL++ GF+ IHG++DQ +R L FK+G I ++ Sbjct: 239 T-DNVSTAIIFANRKTTVRELAKSLQRHGFAAGEIHGDMDQSARNAELQKFKDGEISILC 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLD+ V HVFNFD P ++Y+HR+GRTGR G G+AFTLV+ ED + I+ + Sbjct: 298 ASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRVGRTGRGGATGRAFTLVSDEDSESIENV 357 Query: 361 EKLIEKKV 368 EKL K+ Sbjct: 358 EKLQGTKI 365 >gi|148553067|ref|YP_001260649.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas wittichii RW1] gi|148498257|gb|ABQ66511.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1] Length = 448 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 207/368 (56%), Positives = 263/368 (71%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ AV +AGY +PTPIQ + IP VL D+ GIAQTGTGKTASFVLPM+ Sbjct: 1 MSFADLGLSDELLRAVSEAGYSEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL GR+R RMPR+LILEPTRELAAQVA+NFEKYGK + LT+ALLIGG+ Q LE Sbjct: 61 DILAHGRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLTMALLIGGVNMGDQVAALE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR++D F RGK+L+ +LVIDEADRMLDMGFIP I+ I + +P RQT Sbjct: 121 KGVDVLIATPGRLMDLFGRGKILLTGCSLLVIDEADRMLDMGFIPDIEEICTKLPAQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPK+IEV+ P+ST I+ V T ++ ++ L+ LL Sbjct: 181 LLFSATMPAPIKKLADKFLSNPKQIEVSRPASTNLAIDQSLVETSSRAKRET--LRGLLN 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + IIF N+K V +L SL + GF IHG+++Q R++ L FK G I ++V Sbjct: 239 GGD-VSTAIIFSNRKTTVRDLAQSLGRYGFRAGQIHGDMEQPERLRELDRFKGGEINILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARGLDI V HV NFDVP ++Y+HR+GRTGR G G A TLV ED + I+AI Sbjct: 298 ASDVAARGLDIKGVSHVINFDVPWHPDDYVHRVGRTGRGGATGTAITLVTPEDAEAIEAI 357 Query: 361 EKLIEKKV 368 EKL K+ Sbjct: 358 EKLTGNKI 365 >gi|254454125|ref|ZP_05067562.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238] gi|198268531|gb|EDY92801.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238] Length = 501 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/355 (51%), Positives = 256/355 (72%), Gaps = 7/355 (1%) Query: 41 VCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100 + GIAQTGTGKTA F LPM+T+L++GRAR RMPR+L+L PTRELAAQVA+NF+ Y K Sbjct: 1 MLGIAQTGTGKTAGFTLPMITMLKRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTK 60 Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 LT ALLIGG+ F+ Q+ ++RG DVLI TPGR+LDHF RGKL++++++I+V+DEADRMLD Sbjct: 61 LTKALLIGGVSFKEQDNLIDRGVDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLD 120 Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 MGFIP I+ I L PFTRQTL FSATM E+++++ FL NP +IEV ++T+ETI Sbjct: 121 MGFIPDIERIFGLTPFTRQTLFFSATMAPEIERITNTFLSNPAKIEVARAATTSETITQG 180 Query: 221 FV-----ATYAQYSKKCALLQQLLQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 + ++ S+K LL+ ++ S+ +NGIIFCN+K +V + S+ K G Sbjct: 181 VIMFKGSKKASEASEKQKLLRDIIASEGADCRNGIIFCNRKIDVDAVAKSMTKAGLDASP 240 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 IHG+++Q RM+ L+ F++GT++ +VASD+AARGLDIP+V HVFN+DVP+ AE+Y+HRIG Sbjct: 241 IHGDLEQSHRMRTLAKFRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIG 300 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN-GDLSSLNPPLEKIDIA 388 RTGRAG+ G + D K+ D IE+L+E + + ++S+ P +D A Sbjct: 301 RTGRAGKTGTTIMICTPRDQKNFDDIERLVEMAIPRMELPGMASVAPVATPVDAA 355 >gi|209545432|ref|YP_002277661.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533109|gb|ACI53046.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 555 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/370 (53%), Positives = 250/370 (67%), Gaps = 3/370 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGLS + A+ D GY PTPIQ + IP VL DV G+AQTGTGKTASF LPML I Sbjct: 51 FSDLGLSDPIQRAIDDMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEI 110 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RAR RMPR+LILEPTRELA QVA+NF YGK L ALLIGG Q L RG Sbjct: 111 LSGSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRG 170 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR++D F RG LL+ +LVIDEADRMLDMGFIP I+ I +++ RQTL Sbjct: 171 VDVLIATPGRLIDLFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLF 230 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++++++ FLQNPK I V+ PSS A TIE V + K +L+++L+ Sbjct: 231 FSATMAPEIRRLADMFLQNPKEITVSRPSSVATTIETGLVVV--DEADKRRVLRRMLR-D 287 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++N I+FCN+K++V L SL K FS A+HG++ Q R L FK G ++++V S Sbjct: 288 DAVQNAIVFCNRKRDVDVLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCS 347 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HVFNFD+P AE+Y+HRIGRTGRAGR G A++L D +AIE Sbjct: 348 DVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRSGHAYSLATPYDRALAEAIET 407 Query: 363 LIEKKVDWLN 372 LI + L Sbjct: 408 LIGHAIPRLE 417 >gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] Length = 793 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/496 (42%), Positives = 287/496 (57%), Gaps = 52/496 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ + GY PTPIQ + IP VL+ HDV G+AQTGTGKTASF LPML Sbjct: 293 FADLGLSEPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLQK 352 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RAR RMPR+LILEPTRELA QVA+NF+ YGK LT ALLIGG Q L RG Sbjct: 353 LAGSRARARMPRSLILEPTRELALQVAENFKLYGKYLRLTHALLIGGESMAEQRDVLNRG 412 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LD F RG LL+ LVIDEADRMLDMGFIP I+ I +L+P RQTL Sbjct: 413 VDVLIATPGRLLDLFGRGGLLLTQTSTLVIDEADRMLDMGFIPDIEKIVALLPAHRQTLF 472 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++++++ FL++P I V+ SS A TIE V ++ L++LL+ + Sbjct: 473 FSATMAPEIRRLADAFLRHPVEITVSRQSSVATTIEEALVIVPEDEKRRT--LKKLLRRE 530 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + +++ I+FCN+K++V + L K +HG++ Q R L F+ G ++ +V S Sbjct: 531 N-VQSAIVFCNRKRDVDMIQQYLTKHDIEAGHLHGDLAQSLRFSTLERFRSGELKFLVCS 589 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HVFN+D+P AE+Y+HRIGRTGRAG G AF+L D + ++AIE Sbjct: 590 DVAARGIDIGGLSHVFNYDLPFNAEDYVHRIGRTGRAGNEGHAFSLATPRDRRLLEAIET 649 Query: 363 LIEK-----------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ----KSTGFD 407 L K VDW + + A P PQ + Sbjct: 650 LTGKVIARPVLEGITTVDWAPEE-------------GERRPAETATPAPQDVAEEGEQRP 696 Query: 408 RRKKNYSSQKSHIPLKESEKISKL----------------QQDIQ-----ENDADSLGFR 446 R+++ +++ ESE + ++ + ++ END GF Sbjct: 697 RKRRRGGRKRNRGDRDESETVQQVAPTAVASVAVIEAPVSHRSVELAPAFENDGPKTGFG 756 Query: 447 GNMPAFMLPKNRGKLN 462 G+ PAFML R K+ Sbjct: 757 GDTPAFMLVPRRRKVT 772 >gi|23010493|ref|ZP_00051162.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 407 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 172/292 (58%), Positives = 222/292 (76%) Query: 87 QVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNN 146 QV +NFE+YG N+ L VAL+IGG+ F Q+ KL RG DVLI TPGR+LDHF RGKLL+ Sbjct: 1 QVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATPGRLLDHFERGKLLLTG 60 Query: 147 IEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIE 206 +E+LVIDEADRMLDMGFIP I+ I +VPFTRQTL FSATM E++++++ FL NP+R+E Sbjct: 61 VELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEIERLADMFLHNPQRVE 120 Query: 207 VNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE 266 V PSSTA TIE VAT A+ +K +L+ L++S + ++NGIIFCN+K++V L SL Sbjct: 121 VARPSSTATTIEQRLVATGAEGHEKRKVLRHLIRSANELQNGIIFCNRKRDVAQLQRSLT 180 Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326 GF+ A+HG++DQR+RM L F+ G L+VASD+AARGLDIP V HVFNFDVP+ Sbjct: 181 SHGFNAAALHGDMDQRARMAALDGFRSGETPLLVASDVAARGLDIPAVSHVFNFDVPHHP 240 Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 E+Y+HRIGRTGRAGR G AFTL ++ D + + AIE LI + + WL GDLS+L Sbjct: 241 EDYVHRIGRTGRAGRAGHAFTLASRADERSLAAIESLIGRPIAWLEGDLSTL 292 >gi|162148820|ref|YP_001603281.1| cold-shock DEAD box protein A-like protein [Gluconacetobacter diazotrophicus PAl 5] gi|161787397|emb|CAP56992.1| Cold-shock DEAD box protein A homolog [Gluconacetobacter diazotrophicus PAl 5] Length = 483 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 191/353 (54%), Positives = 239/353 (67%), Gaps = 3/353 (0%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY PTPIQ + IP VL DV G+AQTGTGKTASF LPML IL RAR RMPR+LILE Sbjct: 2 GYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILSGSRARARMPRSLILE 61 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QVA+NF YGK L ALLIGG Q L RG DVLI TPGR++D F R Sbjct: 62 PTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRGVDVLIATPGRLIDLFER 121 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 G LL+ +LVIDEADRMLDMGFIP I+ I +++ RQTL FSATM E++++++ FL Sbjct: 122 GGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLFFSATMAPEIRRLADMFL 181 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 QNPK I V+ PSS A TIE V + K +L+++L+ D ++N I+FCN+K++V Sbjct: 182 QNPKEITVSRPSSVATTIETGLVVV--DEADKRRVLRRMLR-DDAVQNAIVFCNRKRDVD 238 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 L SL K FS A+HG++ Q R L FK G ++++V SD+AARG+DI + HVFN Sbjct: 239 VLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCSDVAARGIDIGGLSHVFN 298 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372 FD+P AE+Y+HRIGRTGRAGR G A++L D +AIE LI + L Sbjct: 299 FDLPFHAEDYVHRIGRTGRAGRSGHAYSLATPYDRALAEAIETLIGHAIPRLE 351 >gi|90419641|ref|ZP_01227551.1| ATP-dependent RNA helicase rhlE [Aurantimonas manganoxydans SI85-9A1] gi|90336578|gb|EAS50319.1| ATP-dependent RNA helicase rhlE [Aurantimonas manganoxydans SI85-9A1] Length = 382 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/291 (60%), Positives = 224/291 (76%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGLS KV+ AV AGY +PTPIQ + IP L+R DV GIAQTGTGKTASFVLPMLT+ Sbjct: 23 FSELGLSAKVLAAVHAAGYNEPTPIQEQAIPHALERRDVLGIAQTGTGKTASFVLPMLTM 82 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+GRAR RMPRTLI+EPTRELAAQVA++F +YG + L VALLIGG+ F Q++K++RG Sbjct: 83 LEQGRARARMPRTLIIEPTRELAAQVAESFTRYGLDQKLNVALLIGGVSFADQDRKIDRG 142 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLI TPGR+LDHF RGKLLM +E+LVIDEADRMLDMGFIP I+ I L+P +RQTL Sbjct: 143 ADVLIATPGRLLDHFERGKLLMTAVEVLVIDEADRMLDMGFIPDIERICKLLPVSRQTLF 202 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ +++E FLQNP R+EV P+S A T+ VAT +K L+++++ Q Sbjct: 203 FSATMPPEITRLTEQFLQNPVRVEVAKPASAALTVTQRLVATKKDDFEKRDTLRRVIRDQ 262 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 + N IIFCN+K++V L SLE+ GFS A+HG++DQRSR +L F++ Sbjct: 263 TELTNAIIFCNRKRDVATLFRSLERHGFSAGALHGDMDQRSRTAMLQGFRD 313 >gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] Length = 525 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ + IP VLQ DV AQTGTGKTA F LPML Sbjct: 12 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG RA+ R L+L PTRELAAQVA++ E YGKN L A++ GG+P Q KL Sbjct: 72 ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + NP I V TP + A T +V + S+K ALL QL+ Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 249 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K L SLE G AIHGN Q +R K L++FK G +++ Sbjct: 250 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK ++ Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 368 Query: 360 IEKLIEKKVD 369 IE+LI + +D Sbjct: 369 IERLINRVLD 378 >gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] Length = 525 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ + IP VLQ DV AQTGTGKTA F LPML Sbjct: 12 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG RA+ R L+L PTRELAAQVA++ E YGKN L A++ GG+P Q KL Sbjct: 72 ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + NP I V TP + A T +V + S+K ALL QL+ Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 249 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K L SLE G AIHGN Q +R K L++FK G +++ Sbjct: 250 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK ++ Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 368 Query: 360 IEKLIEKKVD 369 IE+LI + +D Sbjct: 369 IERLINRVLD 378 >gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 515 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ + IP VLQ DV AQTGTGKTA F LPML Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG RA+ R L+L PTRELAAQVA++ E YGKN L A++ GG+P Q KL Sbjct: 61 ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + NP I V TP + A T +V + S+K ALL QL+ Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K L SLE G AIHGN Q +R K L++FK G +++ Sbjct: 239 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK ++ Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 357 Query: 360 IEKLIEKKVD 369 IE+LI + +D Sbjct: 358 IERLINRVLD 367 >gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 526 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ + IP VLQ DV AQTGTGKTA F LPML Sbjct: 12 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 71 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG RA+ R L+L PTRELAAQVA++ E YGKN L A++ GG+P Q KL Sbjct: 72 ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 131 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + NP I V TP + A T +V + S+K ALL QL+ Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 249 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K L SLE G AIHGN Q +R K L++FK G +++ Sbjct: 250 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK ++ Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 368 Query: 360 IEKLIEKKVD 369 IE+LI + +D Sbjct: 369 IERLINRVLD 378 >gi|304411082|ref|ZP_07392698.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307301795|ref|ZP_07581553.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304350617|gb|EFM15019.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306913833|gb|EFN44254.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 515 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ + IP VLQ DV AQTGTGKTA F LPML Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG RA+ R L+L PTRELAAQVA++ E YGKN L A++ GG+P Q KL Sbjct: 61 ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + NP I V TP + A T +V + S+K ALL QL+ Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K L SLE G AIHGN Q +R K L++FK G +++ Sbjct: 239 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK ++ Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 357 Query: 360 IEKLIEKKVD 369 IE+LI + +D Sbjct: 358 IERLINRVLD 367 >gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 514 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 180/370 (48%), Positives = 246/370 (66%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ + IP VLQ DV AQTGTGKTA F LPML Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG RA+ R L+L PTRELAAQVA++ E YGKN L A++ GG+P Q KL Sbjct: 61 ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + NP I V TP + A T +V + S+K ALL QL+ Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-SQKSALLIQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K L SLE G AIHGN Q +R K L++FK G +++ Sbjct: 239 K-QNDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK ++ Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLND 357 Query: 360 IEKLIEKKVD 369 IE+LI + +D Sbjct: 358 IERLINRVLD 367 >gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145] gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145] Length = 423 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 186/429 (43%), Positives = 272/429 (63%), Gaps = 17/429 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL P+++ A+ GY +PTPIQ + IP V+ +DV AQTGTGKTA F LP+L Sbjct: 1 MTFSELGLCPEILNALTRQGYTEPTPIQAQAIPAVMAGNDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ RA+ R LIL PTRELAAQV ++ YGK+ L+ A++ GG+ Q KL Sbjct: 61 EMLKGNERAKANTARVLILTPTRELAAQVGESVANYGKDLPLSYAVVFGGVKINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD + + + +E LV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RKGVDILVATPGRLLDLYQQNAIRFPQLETLVLDEADRMLDMGFIHDIKKIIKLLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++K++++ + NP I V P++TAE IE A A+ + K +L Q+L Sbjct: 181 NLMFSATFSDEIRKLAKSLVNNPVEISVAAPNATAERIEQTLYA--AEKTHKPRMLMQIL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + + I+F K L L+K GF AIHGN Q +R K LS+FK G +Q++ Sbjct: 239 RNLN-LPQVIVFSRTKHGANRLVKQLDKDGFLAAAIHGNKSQGARTKALSDFKSGAVQVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + +V N+D+P AE+Y+HRIGRTGRAG+ G A +LV E+ + + A Sbjct: 298 VATDIAARGLDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQVGHAISLVMDEEFRTLKA 357 Query: 360 IEKLIEKKVD--WLNG----DLSSLNPPLEKIDIAQHNHARKNNPIP---QKSTGFDRRK 410 IEKLI + ++ L+G +L+ PP ++ + RK+ P QKS G + + Sbjct: 358 IEKLIGQPIERRTLDGFDEVELTGKTPPPKR----EQRPPRKSRGAPSDKQKSPGRAKHR 413 Query: 411 KNYSSQKSH 419 + S++ S Sbjct: 414 RQGSNKSSQ 422 >gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 550 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 177/370 (47%), Positives = 246/370 (66%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ + IP VLQ DV AQTGTGKTA F LP+L Sbjct: 12 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 71 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +A+ RTL+L PTRELAAQVA++ E YGK L A++ GG+P Q KL Sbjct: 72 ELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 131 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D +N+ + N +EILV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + NP I V TP + A T +V + +K ALL QL+ Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-GQKAALLTQLI 249 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L +LE+ G AIHGN Q +R K L++FK G ++++ Sbjct: 250 KQHD-WQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK ++ Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLND 368 Query: 360 IEKLIEKKVD 369 IE+LI + +D Sbjct: 369 IERLINRILD 378 >gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus JA2] gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus JA2] Length = 483 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 178/372 (47%), Positives = 244/372 (65%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L PK++ AV DAGY TPIQ K IP+VL DV G AQTGTGKTA+F +P+L Sbjct: 19 FDTLALDPKLLRAVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQK 78 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + + R P R L+L PTRELA QVA N + Y K+ L A++ GG+ + Q Sbjct: 79 MLRHENTSMSPARHPVRALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQTA 138 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L+ G +VLI TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P T Sbjct: 139 ELKAGVEVLIATPGRLLDHIEARNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSFLPKT 198 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E+++++ ++LQ+P +EV P++TA T+E F K A ++Q Sbjct: 199 RQTLLFSATFSPEIKRLAGSYLQDPVTVEVARPNATASTVEQRFYGV--GDDDKRATVRQ 256 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ Q + I+F N K L S E+ G A+HG+ Q R+K L+ FK G + Sbjct: 257 ILR-QRELSQAIVFVNSKLGAARLARSFERDGLKTQALHGDKSQDERLKALAAFKAGEVD 315 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+VA+D+AARGLDI D+ VFNFDVP AE+Y+HRIGRTGRAG G A TLV ++D + I Sbjct: 316 LLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVTRDDTRLI 375 Query: 358 DAIEKLIEKKVD 369 IEKLI+KK++ Sbjct: 376 GDIEKLIKKKIE 387 >gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] Length = 550 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 177/370 (47%), Positives = 246/370 (66%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ + IP VLQ DV AQTGTGKTA F LP+L Sbjct: 12 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 71 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +A+ RTL+L PTRELAAQVA++ E YGK L A++ GG+P Q KL Sbjct: 72 ELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 131 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D +N+ + N +EILV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 132 RHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + NP I V TP + A T +V + +K ALL QL+ Sbjct: 192 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-GQKSALLTQLI 249 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L +LE+ G AIHGN Q +R K L++FK G ++++ Sbjct: 250 KQHD-WQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK ++ Sbjct: 309 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLND 368 Query: 360 IEKLIEKKVD 369 IE+LI + +D Sbjct: 369 IERLINRILD 378 >gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 539 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 177/370 (47%), Positives = 246/370 (66%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ + IP VLQ DV AQTGTGKTA F LP+L Sbjct: 1 MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +A+ RTL+L PTRELAAQVA++ E YGK L A++ GG+P Q KL Sbjct: 61 ELLSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D +N+ + N +EILV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 RHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + NP I V TP + A T +V + +K ALL QL+ Sbjct: 181 NLMFSATFSDEIRELAKGLVNNPVEISV-TPRNAAATTVKQWVCPVDK-GQKSALLTQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L +LE+ G AIHGN Q +R K L++FK G ++++ Sbjct: 239 KQHD-WQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK ++ Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLND 357 Query: 360 IEKLIEKKVD 369 IE+LI + +D Sbjct: 358 IERLINRILD 367 >gi|124265824|ref|YP_001019828.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1] gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1] Length = 494 Score = 342 bits (878), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 175/372 (47%), Positives = 245/372 (65%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L PK++ AV ++GY+ TPIQ K IPLVL DV G AQTGTGKTA+F LP+L Sbjct: 21 FDTLALDPKLLRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQK 80 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + K + P R L+L PTRELA QVA+N + Y K+ L ++ GGI + Q Sbjct: 81 MLKHESSSTSPARHPVRALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTA 140 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L+RG +VLI TPGR+LDH ++ +E +V+DEADRMLD+GF+P +Q I S +P + Sbjct: 141 ELKRGVEVLIATPGRLLDHIEAKNCSLSQVEYVVLDEADRMLDIGFLPDLQRILSYLPKS 200 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ ++LQ+P +E P++TA T+E F + K ++Q Sbjct: 201 RQTLLFSATFSPEIKKLANSYLQDPILVETARPNATASTVEQRFY--RVEDDDKRNAVKQ 258 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+++ + I+F N K L + E+ G A+HG+ Q R+K L+ FK G + Sbjct: 259 LLRTR-AITQSIVFVNSKLGAARLARAFERDGLRTQALHGDKSQDERLKALAAFKAGEVD 317 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+VA+D+AARGLDI D+ VFNFDVP AE+Y+HRIGRTGRAG G A TLV+++D + + Sbjct: 318 LLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAITLVSRDDARLV 377 Query: 358 DAIEKLIEKKVD 369 IEKLI+KK+D Sbjct: 378 SDIEKLIKKKLD 389 >gi|308050173|ref|YP_003913739.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] gi|307632363|gb|ADN76665.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] Length = 499 Score = 342 bits (878), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 177/381 (46%), Positives = 247/381 (64%), Gaps = 6/381 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLSP++ AV D GY +P+PIQ + IP +L DV AQTGTGKTA F LPML Sbjct: 1 MPFASLGLSPELARAVADKGYREPSPIQAQAIPAILAGKDVMAAAQTGTGKTAGFTLPML 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G RAR R L+L PTRELAAQVA++ + YG+N L ++ GG+ Q + L Sbjct: 61 QNLSRGTRARSNRVRALVLTPTRELAAQVAESVQTYGQNLPLRSVVVFGGVSINPQMQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGADVL+ TPGR+LD F++ + ++E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RRGADVLVATPGRLLDLFSQNAVKFEDLELLVLDEADRMLDMGFIRDIRKILALLPKRRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E+++++ L P ++V+ +STA T+ +K AL+ +L+ Sbjct: 181 NLLFSATFSGEIRELARGLLNQPVEVDVSPRNSTARTVVQRLHPV--DKGRKPALISKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF K L LE+ G AIHGN Q +R + L+ FK+GT+Q + Sbjct: 239 REHNWHQV-LIFTRTKHGANRLAQKLERDGIQAAAIHGNKSQGARTRALAGFKDGTVQAL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G+A +LV E+ K + A Sbjct: 298 VATDIAARGLDIHQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLVCAEEFKLLQA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP 380 IEKLI+K ++ + +L+ P Sbjct: 358 IEKLIQKPIERV--ELAGFEP 376 >gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01] gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01] Length = 531 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 172/367 (46%), Positives = 239/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ GY KP+PIQ K +P VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R R R L+L PTRELAAQV + KYG N LT ++ GG+ Q +KL Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G+DVL+ TPGR+LD +N+ + + +EILV+DEADRMLDMGFI I+ I + +P RQ Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +D+++ +++ + NP I V+ +STA T+E KK A+L +L+ Sbjct: 181 NLLFSATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPV--DKKKKSAMLAKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L H L++QG S IHGN Q +R K L NFK G ++++ Sbjct: 239 KDND-WRQVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NFD+PN +E+Y+HRIGRTGRAG GKA +LV +++ + Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196] gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC 25196] Length = 510 Score = 339 bits (869), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 178/415 (42%), Positives = 263/415 (63%), Gaps = 15/415 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P+++ A+ D GY PTPIQ + IP +L+ D+ G AQTGTGKTASF LPML Sbjct: 1 MSFTELNLTPEILRAIADQGYTDPTPIQTQAIPHILEGRDIMGAAQTGTGKTASFTLPML 60 Query: 61 TILEKGR----ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L+ G + R P RTLIL PTRELA QV ++ + YGK L A + GG+ E Q Sbjct: 61 NLLQSGANTSASPARHPIRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++L G ++L+ TPGR+LDH + + ++ +EIL++DEADRMLDMGF+P I+ I +L+P Sbjct: 121 TRELRAGVEILVATPGRLLDHVQQKAINLSKVEILILDEADRMLDMGFLPDIKRILALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ+L+FSAT +DE++K++ L+ P +EV ++ E I H + +K LL Sbjct: 181 SQRQSLMFSATFSDEIKKLAGKLLREPVLVEVARRNTITELITHVVHPVVRE--RKRELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++SQD ++ ++F K L H LE+ S AIHG+ Q R + L+ FK+G Sbjct: 239 AHLIKSQD-LQQVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGV 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGLDI ++ HV NF++P E+Y+HRIGRTGRAG G A +LV +++ + Sbjct: 298 VRVLVATDVAARGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDEAE 357 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLE-KIDIAQHNHARKNNPIPQKSTGFDRR 409 + IEKL++ K++ S + P E + +AQ A + I QKS G R Sbjct: 358 LLKGIEKLLKFKLE------SKVVPGFEPETPVAQGEAAISHGRIDQKSAGSQPR 406 >gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2] gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2] Length = 445 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 173/367 (47%), Positives = 237/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ AV GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG+ A R LIL PTRELAAQV+D+ E YGK +L ++ GG+ Q +L Sbjct: 61 ERLSKGKPAGPNQARALILTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD FN+ + + +EILV+DEADRMLDMGFI I+ I +P RQ Sbjct: 121 RKGVDILVATPGRLLDLFNQNAIKFDQLEILVLDEADRMLDMGFIHDIKRILKALPKNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT ++E++++++ + NP I V ++TA T+ +K ALL +L+ Sbjct: 181 NLLFSATFSNEIRQLAKGLVNNPVEISVTPRNTTATTVTQWIYPV--DKGRKAALLTKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D +IF K L LE +G AIHGN Q +R K L++FK+GT+Q + Sbjct: 239 KEND-WSQVLIFSRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQAL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + HV NFD+PN AE+Y+HRIGRTGRAG G+A +LV+ +++K + Sbjct: 298 VATDIAARGIDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLVSADEVKELAG 357 Query: 360 IEKLIEK 366 IE LI+K Sbjct: 358 IENLIQK 364 >gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix cholodnii SP-6] gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6] Length = 479 Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 173/372 (46%), Positives = 244/372 (65%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L PK++ A++DAGY+ TPIQ K IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 17 FDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQK 76 Query: 63 L---EKGRAR-VRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + E A R P R L+L PTRELA QVA+N + Y ++ L V + GGI Q Sbjct: 77 MLRHENASASPARHPVRALVLAPTRELADQVANNVKTYARHSQLRVTCVFGGIDMAPQTA 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L+RG +VLI TPGR+LDH +N +E +V+DEADRMLD+GF+P +Q I S +P T Sbjct: 137 ELKRGVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKT 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K+++++LQ+P +EV P++TA +E F + ++ L Sbjct: 197 RQTLLFSATFSPEIKKLAQSYLQDPLLVEVARPNATATNVEQRFYSVTDDDKRRTVL--H 254 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ + ++ I+F N K L S E+ G A+HG+ Q R+K L FK G + Sbjct: 255 ILRER-SITQAIVFVNSKLGAARLARSFERDGLRTSALHGDKSQDERLKALDAFKRGEVD 313 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI D+ VFNFD+P AE+Y+HRIGRTGRAG G A +LV+ +D + + Sbjct: 314 VLVATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLV 373 Query: 358 DAIEKLIEKKVD 369 IE+LI+KK++ Sbjct: 374 SDIEQLIKKKIE 385 >gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae bacterium TAV2] gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae bacterium TAV2] Length = 536 Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 176/381 (46%), Positives = 242/381 (63%), Gaps = 11/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL+ + AV + GY +PTPIQ + +P VL DV G AQTGTGKTA+F LP I Sbjct: 135 FSKLGLNDALAFAVTEMGYTEPTPIQAQAVPAVLAGRDVTGSAQTGTGKTAAFALP---I 191 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L K A R R L+LEPTRELA QV + F+KY K +LT ++ GG+ + Q + L+RG Sbjct: 192 LHKLGAHERRLRCLVLEPTRELALQVEEAFQKYSKYTDLTATVVYGGVGYGKQREDLQRG 251 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV+ TPGR+LDH +G + + ++EILV+DE DRMLDMGF+P ++ I P RQTL Sbjct: 252 VDVVAATPGRLLDHIEQGTMTLADVEILVLDEVDRMLDMGFLPDVKRIVQQCPQARQTLF 311 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ EL +++ L++P I++ S AETI H F A S+K LL LL S+ Sbjct: 312 FSATLPPELAQLASWALRDPVEIKIGQRRSPAETISHAFYPVVA--SQKFDLLIDLL-SR 368 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K+ IIF K + H L+++G +V IH + +QR R++ L FK G +++VA+ Sbjct: 369 TEFKSVIIFTRTKMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKSGKFEVLVAT 428 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV N+DVP E+Y+HRIGRTGRA G AFTLV ++D++ +IE+ Sbjct: 429 DIAARGLDIAGVSHVINYDVPENPEDYVHRIGRTGRANASGDAFTLVTEDDVRDARSIER 488 Query: 363 LI-----EKKVDWLNGDLSSL 378 I KK+D + S+L Sbjct: 489 YINAEIERKKIDGFDYIYSAL 509 >gi|212633675|ref|YP_002310200.1| DEAD box helicase [Shewanella piezotolerans WP3] gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3] Length = 482 Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 174/413 (42%), Positives = 263/413 (63%), Gaps = 4/413 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +++ AV + GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +A + R L+L PTRELAAQV ++ E YGKN L A++ GG+ Q KL Sbjct: 61 ELLSKGNKAPAKQVRALVLTPTRELAAQVGESVEIYGKNLPLKSAVIFGGVGIGPQISKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR+LD +N+ + + +E+LV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 SRGVDILVATPGRLLDLYNQRAVNFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++K+++ + NP I V ++TA T++ +K ++L +L+ Sbjct: 181 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATANTVKQWICPV--DKGQKASVLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L +L+ +G + AIHGN Q +R K L+ FK G ++++ Sbjct: 239 KQHD-WQQVLVFSRTKHGANRLAKNLDAKGITAAAIHGNKSQGARTKALAEFKSGDVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK + Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDEEIKLLRD 357 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 IE LI++ ++ + + L + D+ + +H + P S G ++++ N Sbjct: 358 IELLIKQNLERRVIEGFEPSHKLPETDLTRKSHGQNKGPRNSNSRGSNQKRSN 410 >gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 494 Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 168/369 (45%), Positives = 243/369 (65%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G RA + R L+L PTRELAAQVA++ E YGKN L A++ GG+ Q KL Sbjct: 61 ELLSRGKRAPAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD +N+G + +E+LV+DEADRMLDMGFI I+ I ++P RQ Sbjct: 121 GKGVDILVATPGRLLDLYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKKILKILPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++ +++ + NP I V ++TA+T+E ++ Q K AL+ L Sbjct: 181 NLMFSATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQ-YIYPVDQKQKTAALIH--L 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q+ K ++F K + +LE G + AIHGN Q +R K L+NFK G ++++ Sbjct: 238 VKQNEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + +V NFD+PN E+Y+HRIGRTGRAG +G+A +LV+ ++ K + Sbjct: 298 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRD 357 Query: 360 IEKLIEKKV 368 IE+LI++ + Sbjct: 358 IERLIKQNI 366 >gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 513 Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 170/369 (46%), Positives = 244/369 (66%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 23 MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 82 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G RA+ + R L+L PTRELAAQVA++ E YGKN L A++ GG+ Q KL Sbjct: 83 ELLTRGNRAQAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVVFGGVGIGPQISKL 142 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD FN+ L N +E+L++DEADRMLDMGFI I+ I ++P RQ Sbjct: 143 GKGVDILVATPGRLLDLFNQRALNFNQLEVLILDEADRMLDMGFIHDIKKILKVLPAKRQ 202 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++K+++ + NP I V ++TA+T+E ++ Q K AL+ L Sbjct: 203 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKTVEQ-YIYQVDQKQKTAALIH--L 259 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q+ K ++F K + +LE + AIHGN Q +R K L+NFK G ++++ Sbjct: 260 IKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEVRVL 319 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + +V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ ++ K + Sbjct: 320 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGADGQAVSLVSGDESKLLRD 379 Query: 360 IEKLIEKKV 368 IE+LI++K+ Sbjct: 380 IERLIKQKI 388 >gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1003] gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003] Length = 487 Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 175/372 (47%), Positives = 241/372 (64%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ AV ++GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N + Y K+ L A++ GG+ Q++ Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +STA + V A+ K A++Q Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQ-IVYEVAEGDKTGAVVQ- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + ++K I+FCN K L SLE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVD 369 IEKLI++ +D Sbjct: 370 ADIEKLIKRPLD 381 >gi|37676819|ref|NP_937215.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|37201363|dbj|BAC97185.1| DNA and RNA helicase [Vibrio vulnificus YJ016] Length = 509 Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 169/367 (46%), Positives = 241/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG R R R LIL PTRELAAQV +N Y ++ +L A++ GG+ Q +L Sbjct: 61 ERLAKGPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +++ + + +E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ + NP I VN +STA T+E C A KK A+L +L+ Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYP--ADVKKKPAMLAKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L L QG + AIHGN Q +R K L++FK G ++++ Sbjct: 239 KDGD-WRQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGDVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQE 364 >gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14] gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14] Length = 497 Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 174/370 (47%), Positives = 241/370 (65%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ AV GY KP+PIQ + IP +L DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L GR AR R L+L PTRELAAQV ++ YGKN L+ A++ GG+ Q ++ Sbjct: 61 ERLANGRPARSNHVRALVLTPTRELAAQVGESVATYGKNLRLSSAVVFGGVKVNPQMLRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D ++ + ++EILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ + NP I+VN + TA T++ KK LL +LL Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPVEIDVNPRNQTARTVKQWICPV--DQKKKPNLLTKLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ K ++F K L LE +G S AIHGN Q +R K L+NFK G ++++ Sbjct: 239 NERN-WKQVLVFTKTKHGANKLATHLESRGVSAAAIHGNKSQGARTKALANFKSGDVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+P+ AE+Y+HRIGRTGRAG G+A +LV+ E+ K + A Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAA 357 Query: 360 IEKLIEKKVD 369 IE+L ++ D Sbjct: 358 IERLTQQVFD 367 >gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] Length = 450 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 179/434 (41%), Positives = 269/434 (61%), Gaps = 10/434 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL L+P ++ A+ +AGYV PTPIQ + IPL L+ HD+ AQTGTGKTA+F LPML Sbjct: 4 VSFVDLKLAPPILKALTEAGYVTPTPIQAQAIPLALEGHDLMAGAQTGTGKTAAFALPML 63 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + P R LIL PTRELA QV ++ + Y K+ NL ++ GG+ + Q Sbjct: 64 QKLLPHASASTSPAKHPVRALILVPTRELAVQVEESVKAYAKHTNLRSLVVYGGVDIKTQ 123 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G ++L+ TPGR+LDH + +L+N +++LV+DEADRMLDMGF+P ++ I +L+P Sbjct: 124 TPHLKTGVEILVATPGRLLDHIEQKTVLLNQVQMLVLDEADRMLDMGFMPALKRILALLP 183 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ+L+FSAT ++E++K+SE+F+ P IEV +++AE I + S K LL Sbjct: 184 RQRQSLMFSATFSNEIKKLSEDFMNYPTLIEVARSNASAENITQKVY--LVEQSGKHQLL 241 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 QLL+ D K I+F K L L+++G S AIHG+ Q RM+ L FK+G Sbjct: 242 AQLLRGDDA-KQVIVFTKTKLTASRLAKQLQREGVSADAIHGDKSQLERMQALDAFKQGR 300 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + +++A+D+AARGLDI + V N+++P+ AE+Y+HRIGRTGRAG G A +LV+ E+ K Sbjct: 301 VAVLIATDVAARGLDIDSLPMVINYEIPHAAEDYVHRIGRTGRAGASGTAISLVSPEEEK 360 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 ++ IEKLI+K++ D+ + + + + + N + P P+K + K Y Sbjct: 361 YLLEIEKLIKKEIQKERVDMPAPDARPHRAEPRERNR-EYHAPAPKKPSHDPWFDKPYVP 419 Query: 416 QKS-HIPLKESEKI 428 S P+K+ E + Sbjct: 420 NISAEAPVKKPEPV 433 >gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6] gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6] Length = 509 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 168/367 (45%), Positives = 241/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG R R R LIL PTRELAAQV +N Y ++ +L A++ GG+ Q +L Sbjct: 61 ERLAKGPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +++ + + +E+L++DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ + NP I VN +STA T+E C A KK A+L +L+ Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYP--ADVKKKPAMLAKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L L QG + AIHGN Q +R K L++FK G ++++ Sbjct: 239 KDGD-WQQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQE 364 >gi|87119807|ref|ZP_01075704.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121] gi|86165283|gb|EAQ66551.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121] Length = 450 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 162/369 (43%), Positives = 244/369 (66%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+LGLS ++ A+ ++GY KP+PIQ + IP +L+ +D+ AQTGTGKTA F LP+L Sbjct: 1 MSFAELGLSKPILTAIKESGYSKPSPIQQQAIPAILESNDIMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 IL +G +A R L+L PTRELAAQVAD+ YG++ NL ++ GG+ Q +L Sbjct: 61 EILSRGAKANANQVRALVLTPTRELAAQVADSVATYGQHLNLRSDVVFGGVKINPQMMRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD +N+ + + +E+LV+DEADRMLDMGFI I+ + +L+P RQ Sbjct: 121 RKGTDILVATPGRLLDLYNQKAIRFDQLEVLVLDEADRMLDMGFIHDIKKVLALLPKRRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +D+++++++ + NP + V+ ++ T++H +K ALL L+ Sbjct: 181 NLLFSATFSDDIRQLAKGLMNNPVEVSVSPANAATPTVKHLL--HPVDKKEKTALLIHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +QD + ++F K + L G S AIHGN Q +R K L++FK I+++ Sbjct: 239 VTQD-WQQALVFSRTKHGANKIVQKLNDAGISAAAIHGNKSQGARTKALADFKNSDIRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+PN AE+Y+HRIGRTGRAG GKA +LV+ +++ + Sbjct: 298 VATDIAARGIDIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGATGKAVSLVSADEVDQLKD 357 Query: 360 IEKLIEKKV 368 IE+LI+K + Sbjct: 358 IERLIKKLI 366 >gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O] gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O] Length = 509 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 168/367 (45%), Positives = 240/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG R R R LIL PTRELAAQV +N Y ++ +L A++ GG+ Q +L Sbjct: 61 ERLAKGPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +++ + + +E+L++DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ + NP I VN +STA T+E C A KK A+L +L+ Sbjct: 181 NLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYP--ADVKKKPAMLAKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + ++F K L L QG + AIHGN Q +R K L++FK G ++++ Sbjct: 239 NDGD-WRQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQE 364 >gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1] gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea MMB-1] Length = 425 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 172/376 (45%), Positives = 240/376 (63%), Gaps = 6/376 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ GY +P+PIQ IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFSSLGLSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +AR R L+L PTRELAAQV +N Y +N L ++ GG+ Q KL Sbjct: 61 ELLSKGEKARSNNVRALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DVL+ TPGR+LD F++ + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RRGVDVLVATPGRLLDLFSQNAISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPKERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +D+++++++N +++ + V P++T E I + SKK A L+ L+ Sbjct: 181 TLLFSATFSDDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPV--DKSKKSAALKFLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 QS+D + ++F K L +K G AIHGN Q +R K L+ FK G I+++ Sbjct: 239 QSRD-LSQVLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + HV NFD+PN +Y+HRIGRTGRAG G+A +LV++++ + Sbjct: 298 VATDIAARGIDIDQLPHVVNFDLPNVPADYVHRIGRTGRAGATGEAISLVSEDEADQLSD 357 Query: 360 IEKLIEKKV--DWLNG 373 IE LI K + D+L G Sbjct: 358 IENLIRKPIPRDYLEG 373 >gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36] gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36] Length = 449 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 168/370 (45%), Positives = 239/370 (64%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGLS ++ AV + GY P+ IQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFTDLGLSAPILKAVAEKGYDTPSAIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 IL +G R R RTLIL PTRELAAQ+A+N E Y K+ LT ++ GG+ Q +L Sbjct: 61 EILSQGPRPRANQARTLILTPTRELAAQIAENIEVYSKHLRLTSTVVFGGVKINPQMTRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR+LD +N+ + + +EILV+DEADRMLDMGF+ I+ I +++P RQ Sbjct: 121 RRGVDILVATPGRLLDLYNQNAIRFHQLEILVLDEADRMLDMGFLRDIRKILAVLPQKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +D++++++ + +P I V ++ A+++E + KK ALL L Sbjct: 181 NLLFSATFSDDIRQLARGLINDPVEISVTPRNAAAKSVEQWM---HPVDKKKKALLLTHL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ K ++F K L LE+QG + AIHGN Q +R K L+NFK G ++ + Sbjct: 238 IKENDWKQVLVFTKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKALANFKSGEVRAL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DI + V NFD+PN E+Y+HRIGRTGRAG G A +LV +++K + A Sbjct: 298 IATDIAARGIDIVQLPQVVNFDLPNVPEDYVHRIGRTGRAGSEGTAISLVCHDEMKELVA 357 Query: 360 IEKLIEKKVD 369 IE+L +K ++ Sbjct: 358 IEQLTQKHLE 367 >gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3] gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3] Length = 551 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 168/367 (45%), Positives = 239/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ GY KP+PIQ K +P VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R R R L+L PTRELAAQV + KYG N LT +++ GG+ Q +KL Sbjct: 61 ELLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGLNLPLTSSVVFGGVKINPQMQKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G+DVL+ TPGR+LD +N+ + + +EILV+DEADRMLDMGFI I+ I + +P RQ Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +D+++ +++ + NP I V+ +STA+T+E KK +L +L+ Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPV--DKKKKSPMLAKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L L++QG + IHGN Q +R K L NFK G ++++ Sbjct: 239 KDND-WRQVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NFD+P+ +E+Y+HRIGRTGRAG GKA +LV +++ + Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] Length = 492 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 167/369 (45%), Positives = 244/369 (66%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY PTPIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 14 MSFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 73 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G RA+ + R L+L PTRELAAQVA++ + YGK L A++ GG+ Q KL Sbjct: 74 ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQISKL 133 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD +N+G + N +E+LV+DEADRMLDMGFI I+ I +P RQ Sbjct: 134 GKGVDILVATPGRLLDLYNQGAVNFNQLEVLVLDEADRMLDMGFIHDIKKILRALPAKRQ 193 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++K+++ + NP I V ++TA+++E ++ Q K AL+ L Sbjct: 194 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQ-YIYMVDQKQKTAALIH--L 250 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q+ + ++F K + +LE + + AIHGN Q +R K L+NFK G ++++ Sbjct: 251 IKQNDWQQVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGLVRVL 310 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + +V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ ++ K + Sbjct: 311 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLRD 370 Query: 360 IEKLIEKKV 368 IE+LI+K + Sbjct: 371 IERLIKKNI 379 >gi|127511538|ref|YP_001092735.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126636833|gb|ABO22476.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 491 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 170/367 (46%), Positives = 238/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV D GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G RAR + R L+L PTRELAAQ+A++ YG++ L A++ GG+ Q +L Sbjct: 61 ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG D+L+ TPGR+LD + + + + +E LV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++ +++ + NP I V +STA T++ +KK A L +L+ Sbjct: 181 NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPV--DKNKKSAALVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q D + ++F K L LE +G + AIHGN Q +R K L+NFK G ++++ Sbjct: 239 QQGD-WQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG GKA +LV+ E+ K + Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLAD 357 Query: 360 IEKLIEK 366 IE+LI K Sbjct: 358 IERLIGK 364 >gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp. AL212] gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212] Length = 457 Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 162/371 (43%), Positives = 246/371 (66%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L P ++ A+ +AGY PTPIQ + +P ++ HDV AQTGTGKTA+F+LP L Sbjct: 1 MSFEKLNLHPSILKAIQEAGYTTPTPIQQQAVPELIAGHDVMASAQTGTGKTAAFMLPAL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 T+ + R R PR L+L PTRELA QV++ +KYGK + V ++GG+P+ QNK Sbjct: 61 HTLATPAQIRSRGPRVLVLTPTRELALQVSEAAKKYGKYLPRINVVSILGGMPYPLQNKL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L + D+L+ TPGR++DH RG++ +++LV+DEADRMLDMGFI ++ I + P TR Sbjct: 121 LSQPVDILVATPGRLIDHIQRGRIDFKRLQMLVLDEADRMLDMGFIEDVETIAAATPATR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQ 237 QTLLFSAT+ + + +V+ L+ P+RI+V++P S + IE YA S K LL Sbjct: 181 QTLLFSATLDNAIDRVAAKLLKTPQRIQVSSPKSKLDNIEQRL--HYADDMSHKNRLLDH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ + T+K I+F K++ +L +L QG++ A+HG+++QR R + L+ + G ++ Sbjct: 239 VLRDE-TLKQAIVFTATKRDADSLADTLYAQGYAAAALHGDMNQRERNRTLTRLRNGGLR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ D+ HV NFD+P AE+Y+HRIGRTGRAG G A + + +D H+ Sbjct: 298 VLVATDVAARGIDVADITHVINFDLPKFAEDYVHRIGRTGRAGAAGIAVSFASVKDSMHL 357 Query: 358 DAIEKLIEKKV 368 IE+ +++ Sbjct: 358 TKIERYTGQRI 368 >gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 511 Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 170/370 (45%), Positives = 248/370 (67%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +++ AV + GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +A + R L+L PTRELAAQV ++ E YGKN L A++ GG+ Q KL Sbjct: 61 ELLSKGTKAPAKQVRALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR+LD +N+ L + +E+LV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 NRGVDILVATPGRLLDLYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++++++ + NP I V ++TA T++ +V Q S+K A+L +L+ Sbjct: 181 NLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVQQ-WVCPVDQ-SQKTAVLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K L +LE + + AIHGN Q +R K L++FK G ++++ Sbjct: 239 K-QNDWQQVLVFSRTKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADFKSGAVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G A +LV+ E+ K + Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSNEETKLLRD 357 Query: 360 IEKLIEKKVD 369 IE LI++ ++ Sbjct: 358 IELLIKQNLE 367 >gi|294139294|ref|YP_003555272.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea DSS12] gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea DSS12] Length = 478 Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 166/369 (44%), Positives = 243/369 (65%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G RA+ + R L+L PTRELAAQVA++ E YGK L A++ GG+ Q KL Sbjct: 61 ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD +N+G + N +E+L++DEADRMLDMGFI I+ I ++P RQ Sbjct: 121 GKGVDILVATPGRLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++K+++ + NP I V ++TA+++E ++ Q K AL+ L Sbjct: 181 NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQ-YIYMVDQKQKTAALIH--L 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q+ K ++F K + +LE + AIHGN Q +R K L+NFK G ++++ Sbjct: 238 IKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + +V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ ++ K + Sbjct: 298 VATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRD 357 Query: 360 IEKLIEKKV 368 IE+LI++ + Sbjct: 358 IERLIKQNI 366 >gi|114776507|ref|ZP_01451552.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans PV-1] gi|114553337|gb|EAU55735.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans PV-1] Length = 414 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 169/369 (45%), Positives = 242/369 (65%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ + Y KPTP+Q+++IP +L+ DV AQTGTGKTA F LPML Sbjct: 1 MTFASLGLSAPIL-ETITVTYTKPTPVQLESIPAILKGRDVMAAAQTGTGKTAGFTLPML 59 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G R R R LIL PTRELA QV D+ +YG L A++ GG+ Q KL Sbjct: 60 HLLAQGPRVRANQVRALILVPTRELAGQVGDSVVRYGVRLPLRSAVVFGGVKINPQMMKL 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD + + N +EILV+DEADRMLDMGF+ ++ I +L+P RQ Sbjct: 120 RKGVDILVATPGRLLDLHQQNAVRFNQLEILVLDEADRMLDMGFMDELKKILALLPVKRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++ +++ + +P I VN +STA TIEHC Q +K ALL++L+ Sbjct: 180 NLMFSATYSDEIRALAKTIVHHPVEICVNPANSTATTIEHCLYPVDKQ--QKNALLKKLI 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++FC K+ L LE+Q S AIHG+ Q +R + LS FK +Q++ Sbjct: 238 KDND-WQQVLVFCKTKQAADRLVRFLEQQAISAAAIHGDKSQGARTRALSEFKNSQVQVL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+DLAARGLDIP + V N+D+P+ A++YIHRIGRTGRAG G+A +LV ++ + A Sbjct: 297 VATDLAARGLDIPQLPQVVNYDLPHVAQDYIHRIGRTGRAGVSGQAVSLVCADEFDELAA 356 Query: 360 IEKLIEKKV 368 +E++I++ + Sbjct: 357 VERVIQQLI 365 >gi|226942516|ref|YP_002797589.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii DJ] gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii DJ] Length = 557 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 182/428 (42%), Positives = 258/428 (60%), Gaps = 21/428 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V AV AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60 Query: 61 TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L G R R R L+L PTRELAAQV D+F+ Y ++ L A + GG+ Sbjct: 61 ERLFPGGHPDKEHRHGPRQARVLVLTPTRELAAQVHDSFKLYARDLKLVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQVQALSRGVDVLVACPGRLLDLVGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L +P+RIEV P++T E IE A + K A Sbjct: 181 LPPKRQNLLFSATFSADIVNLTNKLLHDPERIEVTPPNTTVERIEQRVFRLPAGH--KRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ +Q + ++F K L L+K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLV-TQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKS 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GTI+++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GTIRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 K + +IE++ + + DW D+ ++ A+ R+ +P S G + Sbjct: 358 EKLLKSIERMTRQSIPEGDWAGFDIGAVE--------AEKPEVREAHPPRNASAGRKDKG 409 Query: 411 KNYSSQKS 418 K+ +KS Sbjct: 410 KDKGQEKS 417 >gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas naphthalenivorans CJ2] Length = 487 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 172/372 (46%), Positives = 243/372 (65%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ + AV + GY TPIQ + IP+VLQ DV G AQTGTGKTA+F LP+L Sbjct: 5 FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + K + R P R L+L PTRELA QVA+ + Y K NL A++ GG+ + Q Sbjct: 65 MMKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKYTNLNSAVVFGGMDMKPQTL 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ +FLQ+P IEV ++TA T+E F + A ++ L Q Sbjct: 185 RITLLFSATFSPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSVGADDKRRA--LHQ 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+++D +K +F N K L SLE++G A+HG+ Q R+K L +FK G + Sbjct: 243 ILKARD-LKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALESFKSGEVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFNFDVP AE+Y+HRIGRTGRAG G A + VA D + + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVAASDQRLV 361 Query: 358 DAIEKLIEKKVD 369 IEKLI+ K++ Sbjct: 362 TDIEKLIKTKIE 373 >gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] Length = 493 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 174/374 (46%), Positives = 242/374 (64%), Gaps = 8/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ AV ++GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N + Y K+ L A++ GG+ Q++ Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSE 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L++P+ IEV +STA + V A+ K A++Q Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVTQ-IVYEVAEGDKTGAVVQ- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + ++K I+FCN K L SLE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWL 371 IEKLI++ ++ L Sbjct: 370 ADIEKLIKRPLEVL 383 >gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 523 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 169/367 (46%), Positives = 236/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ GY KP+PIQ K +P VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R R R L+L PTRELAAQV + KYG N LT ++ GG+ Q +KL Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G+DVL+ TPGR+LD +N+ + + +EILV+DEADRMLDMGFI I+ I + +P RQ Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +D+++ +++ + NP I V+ +STA T+E KK +L +L+ Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPV--DKKKKAPMLAKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L LE+Q + IHGN Q +R K L NFK G ++++ Sbjct: 239 KDND-WRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NFD+PN +E+Y+HRIGRTGRAG GKA +LV +++ + Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34] gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34] Length = 496 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 173/367 (47%), Positives = 239/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ AV GY KP+PIQ + IP +L DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L GR AR R L+L PTRELAAQV ++ Y KN L+ A++ GG+ Q ++ Sbjct: 61 ERLANGRPARSNHVRALVLTPTRELAAQVGESVATYSKNLRLSSAVVFGGVKVNPQMLRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D ++ + ++EILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ + NP I+VN + TA T++ KK LL +LL Sbjct: 181 NLLFSATFSDEIRELAKGLVSNPVEIDVNPRNQTARTVKQWICPV--DQKKKPNLLTKLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ K ++F K L LE +G S AIHGN Q +R K L+NFK G I+++ Sbjct: 239 NKRN-WKQVLVFTKTKHGANKLATHLESRGISAAAIHGNKSQGARTKALANFKSGDIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+P+ AE+Y+HRIGRTGRAG G+A +LV+ E+ K + A Sbjct: 298 VATDIAARGLDIEQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAA 357 Query: 360 IEKLIEK 366 IE+L ++ Sbjct: 358 IERLTQQ 364 >gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222] gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222] Length = 523 Score = 332 bits (851), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 169/367 (46%), Positives = 236/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ GY KP+PIQ K +P VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R R R L+L PTRELAAQV + KYG N LT ++ GG+ Q +KL Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G+DVL+ TPGR+LD +N+ + + +EILV+DEADRMLDMGFI I+ I + +P RQ Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +D+++ +++ + NP I V+ +STA T+E KK +L +L+ Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPV--DKKKKAPMLAKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L LE+Q + IHGN Q +R K L NFK G ++++ Sbjct: 239 KDND-WRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NFD+PN +E+Y+HRIGRTGRAG GKA +LV +++ + Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFG 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|296273966|ref|YP_003656597.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296098140|gb|ADG94090.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM 7299] Length = 480 Score = 332 bits (851), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 175/420 (41%), Positives = 264/420 (62%), Gaps = 10/420 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ A+ D GY+KP+PIQ + IP++L++HDV AQTGTGKTA F LP+L Sbjct: 1 MTFKELGLIEPLLKAIKDKGYIKPSPIQEQAIPIILEKHDVLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL K + P R LIL PTRELAAQVA + + YGK L A++ GG+ Q Sbjct: 61 QILSKKESNNTKPEIRALILTPTRELAAQVAQSVDDYGKYLPLKTAVIFGGVGINPQKAL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +G D++I TPGR+LDH + + ++++E ++DEADRMLDMGFI I+ + +L+P R Sbjct: 121 IRKGVDIVIATPGRLLDHIEQKTIDISHVEHFILDEADRMLDMGFIRDIRKVLALLPSHR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +DE++K+S+ L PK IEV ++++E + V +K LL +L Sbjct: 181 QNLLFSATFSDEIKKLSDGILNKPKLIEVARRNTSSEMVSQ--VIHLVDKDRKKTLLSKL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ D + ++F K L LE G + AIHGN Q +R K L++FK G +++ Sbjct: 239 IKEGD-WRQVLVFTRTKHGANKLSQQLEIDGITATAIHGNKSQGARTKALADFKAGAVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NF++PN AE+Y+HRIGRTGRAG G+A +LV ++ ++ Sbjct: 298 LVATDIAARGIDIDQLPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHDYLK 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 IEKLI+ + + + ++P ++ I+ + +NN S + KK +SS+K+ Sbjct: 358 GIEKLIKTSIKKVLIEGFEVDPSIKAEPISNGRNKGRNN-----SNSRNTPKKEFSSEKN 412 >gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1001] gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001] Length = 486 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 174/372 (46%), Positives = 239/372 (64%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ AV ++GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N + Y K+ L A++ GG+ Q+ Sbjct: 73 LLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSD 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +STA + V A+ K A++Q Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQ-IVYEVAEGDKTGAVVQ- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + +K I+FCN K L SLE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRERNLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQL 369 Query: 358 DAIEKLIEKKVD 369 IEKLI++ ++ Sbjct: 370 ADIEKLIKRPLE 381 >gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251] gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM 1251] Length = 398 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 166/374 (44%), Positives = 244/374 (65%), Gaps = 6/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ D GY KPTPIQ + IP++L + D+ AQTGTGKTA F LP+L Sbjct: 1 MSFTTLGLSAPILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + ++ + R LIL PTRELAAQV ++ YGK + T ++ GG+ Q L Sbjct: 61 ELLSRDKSSTKKRIRALILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLSAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D++I TPGR+LDH ++ + + ++E LV+DEADRMLDMGFI I+ + +++P +Q Sbjct: 121 RKGVDIVIATPGRLLDHLSQKSIDLKDVEFLVLDEADRMLDMGFINDIKKVLAVLPKNKQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +DE++K+S+ L +P IEV P+ TA++I+ + +K LL L+ Sbjct: 181 TLLFSATYSDEIKKLSDRLLNSPVLIEVERPNKTAQSIKQIVYPVDKE--RKRELLVHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L LEK G S AIHGN Q +RMK L FK+G I+++ Sbjct: 239 K-EGKWQQVLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDGDIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + HV N+++PN E+Y+HRIGRTGRAG G A +LV ++ +++ + Sbjct: 298 VATDIAARGIDIDQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYLSS 357 Query: 360 IEKLIEKKVD--WL 371 IEKLI+ + WL Sbjct: 358 IEKLIKTDIQKVWL 371 >gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16] gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16] Length = 520 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 170/378 (44%), Positives = 245/378 (64%), Gaps = 12/378 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY PTPIQ + IP +L+ D+ AQTGTGKTA F LPML Sbjct: 1 MSFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60 Query: 61 TILEKGRAR--------VRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111 +L AR R+P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 61 QLLSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG 120 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 Q ++L+RG ++++ TPGR+LDH ++ + ++ +E+LV+DEADRMLDMGFI I+ I Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 +++P RQ LLFSAT +D+++ +++ L NP IEV ++TAET++ +K Sbjct: 181 NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPV--DRERK 238 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L++ D + ++F K L L K G S AIHGN Q +R + LS F Sbjct: 239 RELLAHLVRQHDWHQV-LVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEF 297 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K GT++L+VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV Sbjct: 298 KSGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCV 357 Query: 352 EDIKHIDAIEKLIEKKVD 369 ++I + IE+LI++K++ Sbjct: 358 DEIALLRDIERLIKRKLE 375 >gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] Length = 510 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 172/373 (46%), Positives = 240/373 (64%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ A+ ++GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 35 FDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N + Y K+ L A++ GG+ Q++ Sbjct: 95 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 154 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 155 QLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 214 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +STA + V A+ K A+++ Sbjct: 215 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQV-VYEVAEGDKTGAVVK- 272 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + +K I+FCN K L SLE+ G AIHG+ Q RM+ L FK G ++ Sbjct: 273 -LIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVE 331 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 391 Query: 358 DAIEKLIEKKVDW 370 IEKLI++ +D Sbjct: 392 ADIEKLIKRPLDL 404 >gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] Length = 484 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 173/373 (46%), Positives = 239/373 (64%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ A+ ++GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N + Y K+ L A++ GG+ Q+ Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSD 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +STA + V A+ K A++Q Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQV-VYEVAEGDKTGAVVQ- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + +K I+FCN K L SLE+ G AIHG+ Q RM+ L FK G ++ Sbjct: 251 -LIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDW 370 IEKLI++ +D Sbjct: 370 ADIEKLIKRPLDL 382 >gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium vinosum DSM 180] gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM 180] Length = 438 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 165/369 (44%), Positives = 235/369 (63%), Gaps = 3/369 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +++ A+ GY +PTPIQ K IP VL R DV AQTGTGKTA+F LPML Sbjct: 1 MSFSALGLSAELLRAIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L + R R PR L+L PTRELAAQV ++ YG++ L + GG+ Q L Sbjct: 61 HLLSQSTQRQRAPRALVLTPTRELAAQVGESVSTYGQHLPLRALQIFGGVGMVPQTTALR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LDH +G + ++ IE V+DEADRMLDMGFI I+ + L+P RQ Sbjct: 121 RGVDILVATPGRLLDHVGQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQN 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + E+++++ L +P RIEV ++ AET+ V A+ +K+ L +LQ Sbjct: 181 LLFSATYSREIEQLAIGLLHDPLRIEVAPRNTAAETVTQV-VHPVAREAKRSLLSHLILQ 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF K L L + G + AIHGN Q +R + L++FK G ++ +V Sbjct: 240 GD--WQQVLIFTRTKHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKSGALRALV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAG G A +L++ ++ + I Sbjct: 298 ATDIAARGLDIDRLPHVVNFELPNVPEDYVHRIGRTGRAGSDGTAVSLISPDERGLLAGI 357 Query: 361 EKLIEKKVD 369 E+L+ +++D Sbjct: 358 ERLLGRRID 366 >gi|104783960|ref|YP_610458.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48] gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas entomophila L48] Length = 634 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 175/404 (43%), Positives = 252/404 (62%), Gaps = 13/404 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L G R R PR L+L PTRELAAQV D+F+ Y ++ N A + GG+ Sbjct: 61 ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + +G DVL+ PGR+LD +G + ++ +EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ +++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L LEK G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 T++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A ++VA ++ Sbjct: 298 NTVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDE 357 Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + +IE++ ++K+ D + D S++ ++ Q N+ R Sbjct: 358 EKLLKSIERVTKQKIPDGDLMGFDASTVEAEKPEVRERQQNNGR 401 >gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25] gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25] Length = 522 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 170/367 (46%), Positives = 237/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ K IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R LIL PTRELAAQV +N YG++ L+ A++ GG+ Q ++L Sbjct: 61 ERLSNGSRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ + NP I VN +STA T+E A KK +L +L+ Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYP--ADVKKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L L +Q AIHGN Q +R K L++FK G I+++ Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQE 364 >gi|258620096|ref|ZP_05715135.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] gi|258587454|gb|EEW12164.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] Length = 464 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 173/391 (44%), Positives = 250/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADVLVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK A+L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLD 386 >gi|146284249|ref|YP_001174402.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501] gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri A1501] gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166] Length = 609 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 177/425 (41%), Positives = 259/425 (60%), Gaps = 14/425 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS + AV AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60 Query: 61 TILEKG-------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 +L G R + PR L+L PTRELAAQV D+F+ Y ++ L A++ GG+ Sbjct: 61 ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKVYARDLPLKSAVIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + +G DVL+ PGR+LD N+ + ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQAVAKGIDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ LQNP+RIEV P++T E IE + S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLAAKLLQNPERIEVTPPNTTVERIEQRVFRVAS--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ +Q + ++F K L LEK G AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 K + IE++ ++++ +GDL + I+ + P PQ+ R +++ Sbjct: 358 EKLLKGIERMTKQRIP--DGDLQGFD--ASSIEAEKPEVREPRQPRPQRGERKARGERDK 413 Query: 414 SSQKS 418 ++K Sbjct: 414 PAEKG 418 >gi|262164808|ref|ZP_06032546.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223] gi|262027188|gb|EEY45855.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223] Length = 464 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 173/391 (44%), Positives = 250/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADVLVATPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK A+L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLD 386 >gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans DMS010] gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans DMS010] Length = 442 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 167/369 (45%), Positives = 238/369 (64%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL+ ++ A+ + GY P+PIQ K IP ++Q HDV AQTGTGKTA F LP+L Sbjct: 1 MTFSSLGLADPILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G+ A R L+L PTRELAAQVAD+ + YGK L ++ GG+ Q +L Sbjct: 61 HRLASGKPASANQVRALVLTPTRELAAQVADSVQTYGKFLPLRSTVVFGGVKINPQMMRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGAD+L+ TPGR+LD + + + +++E+L++DEADRMLDMGFI I+ I S +P RQ Sbjct: 121 RRGADILVATPGRLLDLYQQNAVRFDHLEVLILDEADRMLDMGFIHDIRKIISFLPKKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT + +++ +++ + NP I V+ +STA T++ KK LL QL+ Sbjct: 181 NLMFSATFSTDIRSLAKTLVNNPIEISVSPANSTATTVKQWIAPV--DKKKKPELLSQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L LE G S AIHGN Q +R K L++FK G Q++ Sbjct: 239 NTHQWTQV-LVFSRTKHGANKLTRHLESVGLSAAAIHGNKSQGARTKALADFKAGDKQIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV NFD+PN AE+Y+HRIGRTGRAG G+A +LV+ ++++H+ Sbjct: 298 VATDIAARGLDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGATGEAISLVSADEVEHLWN 357 Query: 360 IEKLIEKKV 368 IE+LI K + Sbjct: 358 IERLIGKNL 366 >gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] Length = 456 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 170/396 (42%), Positives = 253/396 (63%), Gaps = 18/396 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+LGLSP+++ A+ + GY +PTPIQ K IPLVL D+ AQTGTGKTA+F+LP+L Sbjct: 1 MSFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL 60 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L+K + P R LIL PTRELA Q+A N Y K L ++ GG+ + Q Sbjct: 61 ERLKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++L RG ++LI TPGR+LDH + + +N +++LV+DEADRMLDMGFI I+ I ++P Sbjct: 121 TQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TRQTLLFSAT E+++++E F+ +P+ +EV +ST +E + +Q +K LL Sbjct: 181 RTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQ--RKRYLL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ + M I+FC K + L L++ G + AIHG+ Q +R++ L+ FK G Sbjct: 239 SHLIRERQ-MGQVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGE 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGLDI ++ +V NF++PN E+Y+HRIGRTGRAG G A +L+ +++ K Sbjct: 298 VKVLVATDVAARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDEGK 357 Query: 356 HIDAIEKLIEKKV----------DWLNGDLSSLNPP 381 ++AIEKL + + WL + PP Sbjct: 358 QLEAIEKLTRQTLKPQPVSGFWPSWLERPADEIAPP 393 >gi|258624900|ref|ZP_05719828.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] gi|258582898|gb|EEW07719.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] Length = 451 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 173/391 (44%), Positives = 250/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADVLVATPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK A+L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLD 386 >gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida W619] gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619] Length = 630 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 173/387 (44%), Positives = 246/387 (63%), Gaps = 12/387 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV D+F+ Y ++ L A + GG+ Sbjct: 61 ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + +G DVL+ PGR+LD +G++ + ++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGRVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ +++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L LEK G S AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNP 380 K + +IE++ +K+ +GDL +P Sbjct: 358 EKLLKSIERVTRQKI--ADGDLMGFDP 382 >gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN] gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans PsJN] Length = 489 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 174/372 (46%), Positives = 240/372 (64%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ AV ++GY PTPIQ + IP+VL D+ G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N + Y K+ L A++ GG+ Q++ Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +STA + V A+ K A++Q Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQV-VYEVAEGDKTGAVVQ- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + +K I+FCN K L SLE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVD 369 IEKLI++ +D Sbjct: 370 ADIEKLIKRPLD 381 >gi|262172952|ref|ZP_06040629.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451] gi|261890310|gb|EEY36297.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451] Length = 464 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 173/391 (44%), Positives = 250/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPRVRANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADVLVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK A+L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRIN--LAGFEPTNLLPESKLD 386 >gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114] gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114] Length = 500 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 168/367 (45%), Positives = 240/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ++ IP V++ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G + + R L+L PTRELAAQV ++ EKY KN LT ++ GG+ Q ++L Sbjct: 61 ERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DVL+ TPGR+LD N+ + + +EILV+DEADRMLDMGFI I+ I + +P RQ Sbjct: 121 RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ +++P I V ++TAET+E +K +L +L+ Sbjct: 181 NLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVM--DKGRKPKVLTKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L +LE++G S AIHGN Q +R K L+NFK G ++++ Sbjct: 239 KDND-WKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N D+P E+Y+HRIGRTGRAG GKA + V++++ K + A Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFA 357 Query: 360 IEKLIEK 366 IE+LI+K Sbjct: 358 IERLIQK 364 >gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 492 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 169/399 (42%), Positives = 255/399 (63%), Gaps = 4/399 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +++ AV + GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +A + R L+L PTRELAAQ+ ++ E YG+ L A++ GG+ Q KL Sbjct: 61 ELLSKGTKAPAKQVRALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR+LD +N+ + + +E+LV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 NRGVDILVATPGRLLDLYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++++++ + NP I V ++TA T++ + +K A+L +L+ Sbjct: 181 NLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPV--DHGQKVAVLIELI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K L +LE +G + AIHGN Q +R K L++FK G ++++ Sbjct: 239 K-QNDWQQVLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G A +LV+ E+IK + Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLRD 357 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398 IE LI++ ++ + L + D+ +H + P Sbjct: 358 IELLIKQNLERRPVEGFEPTHSLPETDLTGKSHGQNKGP 396 >gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] Length = 496 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 168/367 (45%), Positives = 240/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ++ IP V++ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G + + R L+L PTRELAAQV ++ EKY KN LT ++ GG+ Q ++L Sbjct: 61 ERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DVL+ TPGR+LD N+ + + +EILV+DEADRMLDMGFI I+ I + +P RQ Sbjct: 121 RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ +++P I V ++TAET+E +K +L +L+ Sbjct: 181 NLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVM--DKGRKPKVLTKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L +LE++G S AIHGN Q +R K L+NFK G ++++ Sbjct: 239 KDND-WKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N D+P E+Y+HRIGRTGRAG GKA + V++++ K + A Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFA 357 Query: 360 IEKLIEK 366 IE+LI+K Sbjct: 358 IERLIQK 364 >gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 494 Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 172/367 (46%), Positives = 240/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ AV GY KP+PIQ K IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLSAPILDAVAKQGYEKPSPIQEKAIPAILEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G AR R L+L PTRELAAQV ++ YGKN ++ A++ GG+ Q ++ Sbjct: 61 ERLAGGCPARSNHVRALVLTPTRELAAQVGESVATYGKNLRISSAVVFGGVKVNPQMLRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D ++ + +IEILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLHSQNAVKFRDIEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ + +P I+VN + TA T++ KK LL +LL Sbjct: 181 NLLFSATFSDEIRELAKGLVNDPVEIDVNPRNQTARTVKQWICPV--DKKKKPNLLTKLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ K ++F K L LE +G + AIHGN Q +R K L+NFK G I+++ Sbjct: 239 -SERNWKQVLVFTKTKHGANKLSAHLESRGITAAAIHGNKSQGARTKALANFKAGEIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+P+ AE+Y+HRIGRTGRAG G+A +LV+ ++ K + A Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCEGEAISLVSADEFKELVA 357 Query: 360 IEKLIEK 366 IE+L ++ Sbjct: 358 IERLTQQ 364 >gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118] gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118] Length = 506 Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 173/374 (46%), Positives = 238/374 (63%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA L L+ + AV D GY TPIQ + IP+VLQ DV G AQTGTGKTA+F LP+L Sbjct: 15 MAFAQLQLAAPLARAVADMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLL 74 Query: 61 TILEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + K + R P R L+L PTRELA QVA + Y + NL A++ GG+ + Q Sbjct: 75 QRMLKHENSSTSPARHPVRALVLLPTRELADQVAQAIKDYAVHTNLRSAVVFGGMDMKPQ 134 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 135 TLELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 194 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R TLLFSAT + E+++++ ++LQ+P IEV ++ A T+E F + A + L Sbjct: 195 KQRITLLFSATFSSEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVDADDKRHA--L 252 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q+L+S+ MK +F N K L SLE +G A+HG+ Q R+K L FK G Sbjct: 253 HQILKSRG-MKQAFVFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALEAFKSGE 311 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + L+V +D+AARGLDI DV VFNFD+P AE+Y+HRIGRTGRAG G A + VAK DI+ Sbjct: 312 VDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGAAGLAVSFVAKSDIR 371 Query: 356 HIDAIEKLIEKKVD 369 + IEKL+ K++ Sbjct: 372 LVADIEKLLNTKIE 385 >gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] Length = 495 Score = 329 bits (844), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 170/367 (46%), Positives = 239/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV GY P+PIQ++ IP V++ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG + + R LIL PTRELAAQV ++ EKY N LT ++ GG+ Q ++L Sbjct: 61 ERLSKGQKLKFNQVRALILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVL+ TPGR+LD N+ + + +EILV+DEADRMLDMGFI I+ I + +P RQ Sbjct: 121 RKGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILNKLPKNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ + NP I V T ++TAET+E +KK +L +L+ Sbjct: 181 NLLFSATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVV--DKTKKARVLTKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L +LE++G S AIHGN Q +R K L+NFK G ++++ Sbjct: 239 KDND-WKQVLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N D+P E+Y+HRIGRTGRAG GKA + V++++ + A Sbjct: 298 VATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEASELFA 357 Query: 360 IEKLIEK 366 IE+LI+K Sbjct: 358 IERLIQK 364 >gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina ymp] gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp] Length = 628 Score = 329 bits (844), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 179/420 (42%), Positives = 257/420 (61%), Gaps = 15/420 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V AV AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R + PR L+L PTRELAAQV D+F+ Y ++ A + GG+ Sbjct: 61 ERLFPDGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L +G DVL+ PGR+LD N+ + ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ +Q + ++F K L LEK G AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 K + +IE++ ++K+ D + D S++ E+ ++ + R QK+ G D+ K Sbjct: 358 EKLLKSIERMTKQKIPDGDLMGFDASAVE--AERPEVREPRQPRNAGQKKQKAEGGDKPK 415 >gi|24375277|ref|NP_719320.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24350080|gb|AAN56764.1|AE015812_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 535 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 182/431 (42%), Positives = 261/431 (60%), Gaps = 17/431 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV + GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +A+ R L+L PTRELAAQV ++ E YGK L A++ GG+P Q KL Sbjct: 61 ELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR+LD + + N +EILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + +P I V ++ A T++ ++K ALL QL+ Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPV--DKTQKSALLIQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K L SL + S AIHGN Q +R K L++FK G ++++ Sbjct: 239 K-QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+IK + Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357 Query: 360 IEKLIEKKVDWLNGD---------LSSLNPPLEKID---IAQH-NHARKNNPIPQKSTGF 406 IE+LI + ++ + ++LNP + +A H H P P+ +G Sbjct: 358 IERLINRVLERQEVEGFSPVHALPETTLNPQGKDTKVKAVANHRKHRSAGKPAPRSGSGR 417 Query: 407 DRRKKNYSSQK 417 D + +SQ+ Sbjct: 418 DTQGNRENSQR 428 >gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 549 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 183/429 (42%), Positives = 261/429 (60%), Gaps = 17/429 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV + GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +A+V R L+L PTRELAAQV+++ E YGK L A++ GG+P Q +KL Sbjct: 61 ELLSKGNKAKVGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR+LD + + N +E+LV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + P I V ++ A T++ ++K ALL QL+ Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPV--DKNQKSALLIQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K L SL + S AIHGN Q +R K L++FK G ++++ Sbjct: 239 K-QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+ K + Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRD 357 Query: 360 IEKLIEKKVDWLNGD---------LSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGF 406 IE+LI + ++ + S+LN ++ I +Q H P P+ TG Sbjct: 358 IERLINRVLERQEVEGFSPVHALPESTLNAHGKENKIKAVASQRKHRSAGKPSPRAGTGR 417 Query: 407 DRRKKNYSS 415 D RK SS Sbjct: 418 DGRKTPDSS 426 >gi|167036018|ref|YP_001671249.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida GB-1] gi|166862506|gb|ABZ00914.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1] Length = 626 Score = 329 bits (843), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 171/386 (44%), Positives = 247/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV D+F+ Y ++ L A + GG+ Sbjct: 61 ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + +G DVL+ PGR+LD +GK+ + ++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ +++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ +Q + ++F K L LEK G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A ++VA ++ Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++++ +GDL + Sbjct: 358 EKLLKSIERVTKQRIQ--DGDLMGFD 381 >gi|30249765|ref|NP_841835.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea ATCC 19718] gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea ATCC 19718] Length = 457 Score = 328 bits (842), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 167/372 (44%), Positives = 239/372 (64%), Gaps = 4/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L P +V AVL AGY PTPIQ + IP ++ HDV AQTGTGKTA+F+LP L Sbjct: 1 MSFENLNLHPAIVKAVLAAGYTAPTPIQQQAIPDLIAGHDVMASAQTGTGKTAAFMLPAL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L + R R PR L+L PTRELA QV+D KYGK + V ++GG+P+ QNK Sbjct: 61 HRLATPAQIRGRGPRILVLTPTRELALQVSDAASKYGKFLPRINVVSILGGMPYPLQNKL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L + DVL+ TPGR++DH RG++ + +E+LV+DEADRMLDMGFI ++ I P TR Sbjct: 121 LSQTVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIQDVERIALSTPATR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+ ++K++ L+ PKRI+V + + IE + + K LL L Sbjct: 181 QTLLFSATLDVAIEKIATRLLKAPKRIQVAAQHTKLDHIEQR-MHYVDDLTHKNRLLDHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ T+K I+F K++ +L +L QG A+HG++ QR R + L+ ++G +++ Sbjct: 240 LRDT-TIKQAIVFTATKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTLTGLRQGRLKI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI D+ HV NFD+P AE+Y+HRIGRTGRAG G A + + +D+ H+ Sbjct: 299 LVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASGKDVAHLK 358 Query: 359 AIEKLIEKKVDW 370 IE+ + ++ Sbjct: 359 RIERFTGNRFEF 370 >gi|148550055|ref|YP_001270157.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida F1] gi|148514113|gb|ABQ80973.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1] Length = 627 Score = 328 bits (842), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 172/386 (44%), Positives = 247/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV D+F+ Y ++ L A + GG+ Sbjct: 61 ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + +G DVL+ PGR+LD +GK+ + ++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ +++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L LEKQG + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++++ +GDL + Sbjct: 358 EKLLKSIERVTKQRI--ADGDLMGFD 381 >gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329] Length = 522 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 170/367 (46%), Positives = 236/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ K IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R LIL PTRELAAQV +N YG++ L+ A++ GG+ Q +L Sbjct: 61 ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ + NP I VN +STA T+E A KK +L +L+ Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYP--ADVKKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L L +Q AIHGN Q +R K L++FK G I+++ Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEIGKAISLVCALEASELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQE 364 >gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] Length = 489 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 172/372 (46%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ + AV + GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 FSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + P R L+L PTRELA QVA Y K L ++ GG+ + Q Sbjct: 65 LLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTL 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQ+P IEV P+ TA T+E F + A K + Q Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQHFYS--ANDDDKRHAIHQ 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+S+ +K IF N K L SLE++G A+HG+ Q R+K L FK+G + Sbjct: 243 VLKSRG-IKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALDAFKQGAVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFNFDVP AE+Y+HRIGRTGRAG G A TLV+ D + + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSGSDARLV 361 Query: 358 DAIEKLIEKKVD 369 IEKL++KK+D Sbjct: 362 ADIEKLLKKKID 373 >gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01] gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01] Length = 517 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 170/367 (46%), Positives = 236/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ K IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R LIL PTRELAAQV +N YG++ L+ A++ GG+ Q +L Sbjct: 61 ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ + NP I VN +STA T+E A KK +L +L+ Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYP--ADVKKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L L +Q AIHGN Q +R K L++FK G I+++ Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQE 364 >gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD 2210633] gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD 2210633] gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] Length = 522 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 170/367 (46%), Positives = 236/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ K IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R LIL PTRELAAQV +N YG++ L+ A++ GG+ Q +L Sbjct: 61 ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ + NP I VN +STA T+E A KK +L +L+ Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYP--ADVKKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L L +Q AIHGN Q +R K L++FK G I+++ Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQE 364 >gi|297579675|ref|ZP_06941602.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385] gi|297535321|gb|EFH74155.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385] Length = 464 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 171/391 (43%), Positives = 250/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK A+L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386 >gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514] gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514] Length = 412 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 170/371 (45%), Positives = 235/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS +V V GYV+PTPIQ++ IPL+L DV G AQTGTGKTA+F LP+L Sbjct: 1 MAFSNLGLSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + LE + R PR LILEPTRELAAQV + + NL A+L GG+ + Q L+ Sbjct: 61 SKLESHQPR---PRLLILEPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D++I TPGR+LDH RG + I+ LV+DEADRMLDMGF+P ++ I P R T Sbjct: 118 AGVDIIIATPGRLLDHLERGTCKFDQIKYLVLDEADRMLDMGFLPDVRRIVDKCPRDRHT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ +++ + + ++NP+ IE+ S AET++H +K LL++LL+ Sbjct: 178 SLFSATVPPQIETLIKWAMKNPQTIEIGARRSPAETVKHVIYPVAE--DQKSDLLRELLE 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+FC K + L++ +V +H N QR R L F+ G +++V Sbjct: 236 RVN-YDSVIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRNGRFEVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI DV HV N+DVP E+YIHRIGRTGRA G AFTL+ ED +H+ +I Sbjct: 295 ATDIAARGLDIADVSHVINYDVPQHPEDYIHRIGRTGRAAATGDAFTLMVAEDSQHVQSI 354 Query: 361 EKLIEKKVDWL 371 E+ I KKV+ + Sbjct: 355 ERFIGKKVERI 365 >gi|26991657|ref|NP_747082.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440] gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida KT2440] Length = 626 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 172/386 (44%), Positives = 247/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV D+F+ Y ++ L A + GG+ Sbjct: 61 ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + +G DVL+ PGR+LD +GK+ + ++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ +++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L LEKQG + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++++ +GDL + Sbjct: 358 EKLLKSIERVTKQRI--ADGDLMGFD 381 >gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] Length = 492 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 171/372 (45%), Positives = 242/372 (65%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ + AV + GY TPIQ + IP+VLQ DV G AQTGTGKTA+F LP+L Sbjct: 5 FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + K + R P R L+L PTRELA QVA+ + Y K+ NL A++ GG+ + Q Sbjct: 65 MLKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKHTNLRSAVVFGGMDMKPQTL 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 125 ELKQGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQ+P IEV ++TA T+E F + A ++ L Q Sbjct: 185 RITLLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRRA--LHQ 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ + MK +F N K L SLE++G A+HG+ Q R+K L FK+G + Sbjct: 243 ILKERG-MKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFNFDVP AE+Y+HRIGRTGRAG G A + VA D + + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVASSDQRLV 361 Query: 358 DAIEKLIEKKVD 369 IEKLI+ K++ Sbjct: 362 ADIEKLIKTKIE 373 >gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 549 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 180/426 (42%), Positives = 254/426 (59%), Gaps = 21/426 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV + GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +A+ R L+L PTRELAAQV+++ E YGK L A++ GG+P Q +KL Sbjct: 61 ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR+LD + + N +EILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + P I V ++ A T++ ++K ALL QL+ Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPV--DKNQKSALLIQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D + ++F K L SL + S AIHGN Q +R K L++FK G ++++ Sbjct: 239 KQED-WQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+ K + Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRD 357 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE---------------KIDIAQHNHARKNNPIPQKST 404 IE+LI + ++ ++ P K +Q H P P+ T Sbjct: 358 IERLINRVLE--RQEIEGFGPAHALPESTLIAHGKDNKVKAVASQRKHRSAGKPTPRTGT 415 Query: 405 GFDRRK 410 G D RK Sbjct: 416 GRDGRK 421 >gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15] Length = 440 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 168/368 (45%), Positives = 236/368 (64%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++V A D GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + PR LIL PTRELAAQV D+ Y K A++ GG+ Q KL Sbjct: 61 QRLGENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQMMKLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGR++D + + + N +EILV+DEADRMLDMGFI I+ I SL+P RQ Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILSLLPAKRQN 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++E++ ++E L NP ++EV +++AE I+ S+K ALL +L++ Sbjct: 181 LLFSATFSNEIRTLAEGLLDNPVQVEVAARNTSAENIKQSVYPV--DQSQKTALLSKLVR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++F K L LEK G + AIHGN Q +R + L++FK G ++++V Sbjct: 239 D-NSWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV+ ++ K + I Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGI 357 Query: 361 EKLIEKKV 368 E+LI+K++ Sbjct: 358 ERLIKKQL 365 >gi|77461504|ref|YP_351011.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1] gi|77385507|gb|ABA77020.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1] Length = 622 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 171/386 (44%), Positives = 244/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ DAGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV D+F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia phymatum STM815] gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum STM815] Length = 482 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 172/372 (46%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F GL ++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP Sbjct: 13 FDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 59 MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + R P R LIL PTRELA QVA N + Y K+ L A++ GG+ Q+ Sbjct: 73 LLPLANTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPTE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +STA + V A+ K A++Q Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQ-IVYEVAEGDKTGAVVQ- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + ++K I+FCN K L LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRERSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNERKQL 369 Query: 358 DAIEKLIEKKVD 369 IEKLI++ +D Sbjct: 370 ADIEKLIKRPLD 381 >gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] Length = 508 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 170/373 (45%), Positives = 236/373 (63%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58 + F GL+ ++ A+ + GY KPTPIQ + IP+VL DV G AQTGTGKTASF LP Sbjct: 42 LSFDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPII 101 Query: 59 --MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L + + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 102 QRLLPLASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQ 161 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L RG ++LI TPGR+LDH + + +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 162 TAELRRGVEILIATPGRLLDHVQQKSTSLAQVQMLVLDEADRMLDMGFLPDLQRILNLLP 221 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT + E++K++ +L++P IEV +STA + V A+ K+ A++ Sbjct: 222 SQRQTLLFSATFSAEIKKLASTYLRDPVTIEVARSNSTASNVRQ-IVFEVAEPDKQAAVV 280 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q + Q + +K I+FCN K L LE+ G AIHG+ Q RM+ L FK G Sbjct: 281 QLIRQRE--LKQVIVFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGE 338 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K Sbjct: 339 IEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSGNERK 398 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 399 QLADIEKLIKRAL 411 >gi|262403377|ref|ZP_06079937.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586] gi|262350876|gb|EEZ00010.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586] Length = 464 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 171/391 (43%), Positives = 250/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L+ A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANKVRALILTPTRELAAQIQDNVLIYGRHLPLSSAVVFGGVKVNPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK A+L +L Sbjct: 181 NLLFSATFSAEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLA 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386 >gi|229593097|ref|YP_002875216.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] gi|229364963|emb|CAY53082.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] Length = 628 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 170/386 (44%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV D+F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G+++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GSVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp. MWYL1] gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1] Length = 463 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 165/370 (44%), Positives = 240/370 (64%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ D GY +P+ IQ + IP +L+ DV AQTGTGKTA F LP+L Sbjct: 5 MSFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLL 64 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 IL KG A+ R L+L PTRELAAQVA++ + YG++ +L ++ GG+ Q L Sbjct: 65 EILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQHLSLKSTVVFGGVKINPQMMAL 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGAD+LI TPGR++D +N+ + + +E+LV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 125 RRGADILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V ++TA ++E +K LL QL+ Sbjct: 185 NLLFSATFSPEIRQLAKGLVNNPIEISVTPRNATAVSVEQWLHPV--DKKRKTELLIQLI 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++F K + LE G AIHGN Q +R + L++FKEG I+++ Sbjct: 243 -ADGRWDQALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALADFKEGRIRIL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV NFD+P+ AE+Y+HRIGRTGRAG GKA +LVA +++ + A Sbjct: 302 VATDIAARGLDIEQLPHVVNFDLPDVAEDYVHRIGRTGRAGATGKAISLVAADELDQLRA 361 Query: 360 IEKLIEKKVD 369 IE+L +K ++ Sbjct: 362 IERLTQKLIE 371 >gi|70733086|ref|YP_262859.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5] gi|68347385|gb|AAY94991.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas fluorescens Pf-5] Length = 622 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 171/386 (44%), Positives = 244/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV D+F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G S AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893] gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893] Length = 441 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 166/368 (45%), Positives = 237/368 (64%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++V A D GY P+PIQ K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFSSLGLSEQLVRATADQGYETPSPIQAKAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + PR LIL PTRELAAQV D+ Y + A++ GG+ Q KL Sbjct: 61 QRLAENPRTGKGPRVLILAPTRELAAQVHDSVALYSRYMPTKSAVVFGGVKINPQMMKLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGR++D + + + N +EILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++E++ ++E L NP ++EV ++ AE+I+ S+K ALL +L++ Sbjct: 181 LLFSATFSNEIRTLAEGLLDNPVQVEVAARNTAAESIKQSVYPV--DQSQKTALLSKLVR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++F K L LE+ G + AIHGN Q +R + L++FK+G ++++V Sbjct: 239 D-NGWEQVLVFTRTKHGANRLTQKLERDGITAAAIHGNKSQGARTRALADFKQGEVRVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV+ ++ K + I Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGI 357 Query: 361 EKLIEKKV 368 E+LI+K++ Sbjct: 358 ERLIKKQL 365 >gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13] gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13] Length = 469 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 181/446 (40%), Positives = 273/446 (61%), Gaps = 36/446 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GLSP ++ A+ D GYV PTPIQ++ IPLVL+ DV G AQTGTGKTA + LPML Sbjct: 17 FEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPMLQS 76 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QV ++ ++Y K + A++ GG+ +Q Sbjct: 77 LLFSANTSMSPARHPVRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISSQTS 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++LI TPGR+LDH + + +++ +ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 137 ILRAGVEILIATPGRLLDHVQQKNVNLSHTQILVLDEADRMLDMGFLPDLQRIVNLLPKQ 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +++++K++ +F+++P +EV ++TAE ++ + S+K A ++ Sbjct: 197 RQNLLFSATFSNDIKKLARSFMKDPVTVEVARQNATAENVKQTVYRI--EESEKNAAVEH 254 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ ++ + +IF N K L LE++G AIHG+ Q RM L FK G+I Sbjct: 255 LLKDRN-QEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSID 313 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGL I ++ V NFD+P AE+Y+HRIGRTGRAG G+A +L +++D + + Sbjct: 314 ILVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGSKGEAISLYSEKDERLL 373 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNH----------ARKNNPIPQKSTGF 406 IEKL ++++ PLEK+ D + H ++ + P KS G Sbjct: 374 KEIEKLTKRQL------------PLEKLTDFEREKHVSPETGGTAYGKRFDRSPYKSVGL 421 Query: 407 DRRKKNYSSQKSHIPL-----KESEK 427 +++ K+ + ++P KESEK Sbjct: 422 EKKSKDPWFDQPYVPSATKSDKESEK 447 >gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17] gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17] Length = 444 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 166/368 (45%), Positives = 240/368 (65%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V A LD GY P+PIQ+K IP VL DV AQTGTGKTA FVLP+L Sbjct: 1 MSFSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +LE+ + PR LIL PTRELAAQV D+ Y + A++ GG+ Q KL Sbjct: 61 QMLEQNPRTGKGPRVLILTPTRELAAQVHDSVNLYSRYVPTRAAVVFGGVKINPQMMKLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGR++D + + + N +E LV+DEADRMLDMGFI I+ I +++P RQ+ Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEFLVLDEADRMLDMGFIRDIRKILAMLPAKRQS 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++E++ +++ L +P +I+V ++TAE++ S+K ALL +L++ Sbjct: 181 LLFSATFSNEIRTLAKGLLNDPVQIDVAVRNTTAESVIQSVYPV--DQSQKTALLSKLVR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F K L L K G + AIHGN Q +R + L+ FK+G I+++V Sbjct: 239 D-NSWEQVLVFTRTKHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV+ +++ + I Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADELSMLVGI 357 Query: 361 EKLIEKKV 368 EKLI+K++ Sbjct: 358 EKLIKKQL 365 >gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] Length = 526 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 170/367 (46%), Positives = 235/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R L+L PTRELAAQV +N Y ++ LT A++ GG+ Q +L Sbjct: 61 ERLSNGPRVRSNQVRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR+LD +N+ + + +E+LV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RKGADVLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ + NP I VN +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYP--ADVKKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L L Q + AIHGN Q +R K L++FK G ++++ Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|296159168|ref|ZP_06841995.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] gi|295890729|gb|EFG70520.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] Length = 491 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 172/372 (46%), Positives = 240/372 (64%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ AV ++GY PTPIQ + IP+VL D+ G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N + Y K+ L A++ GG+ Q++ Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L++P+ IEV +STA + V A+ K A++Q Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQ-IVYEVAEGDKTGAVVQ- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + +K I+FCN K L SLE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRERGLKQVIVFCNSKIGASRLARSLERDGVIATAIHGDRSQNERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVD 369 IEKLI++ ++ Sbjct: 370 ADIEKLIKRPLE 381 >gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] Length = 632 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 171/386 (44%), Positives = 244/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R + PR L+L PTRELAAQV D+F+ Y ++ A + GG+ Sbjct: 61 ERLFPAGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L +G DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQVQALAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ +Q + ++F K L L+K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 SKVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKIP--DGDLMGFD 381 >gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01] gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01] Length = 499 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 170/367 (46%), Positives = 235/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R L+L PTRELAAQV +N Y ++ LT A++ GG+ Q +L Sbjct: 61 ERLSNGPRVRSNQVRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR+LD +N+ + + +E+LV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RKGADVLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ + NP I VN +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYP--ADVKKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L L Q + AIHGN Q +R K L++FK G ++++ Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|330817865|ref|YP_004361570.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3] gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3] Length = 485 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 177/431 (41%), Positives = 260/431 (60%), Gaps = 15/431 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ +Q Sbjct: 73 LLPQANSSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKQ 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L NP+ IEV ++TA + V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLSNPQTIEVARSNATATNVTQV-VYEIAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L LE+ G AIHG+ Q RM+ L FK G ++ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRGEVE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPL----EKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 IEKLI++ + +++ P+ E+ + ++ + R + P++S G + ++ Sbjct: 370 ADIEKLIKRDLPL---QPLAVDAPVRARQERGERSERSRDRDESRGPRRSHGHGGERTHH 426 Query: 414 SSQKSHIPLKE 424 + P+ E Sbjct: 427 HHSRREAPVDE 437 >gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184] gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184] Length = 521 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 173/372 (46%), Positives = 240/372 (64%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ A+++ GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 36 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 95 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q+ Sbjct: 96 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSA 155 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 156 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 215 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++ Q Sbjct: 216 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 273 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L +LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 274 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 332 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 333 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 392 Query: 358 DAIEKLIEKKVD 369 IEKLI++ +D Sbjct: 393 ADIEKLIKRPLD 404 >gi|238028205|ref|YP_002912436.1| putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1] gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1] Length = 480 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 171/369 (46%), Positives = 233/369 (63%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ A+ D GY KPTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKA 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L NP+ IEV ++TA + V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLAATYLTNPQTIEVARSNATATNVTQ-IVYDIAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L +K I+FCN K L LE+ G AIHG+ Q RM+ L FK G ++ Sbjct: 251 -LIRDRALKQVIVFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRGEVE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEK 366 IEKLI++ Sbjct: 370 ADIEKLIKR 378 >gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 522 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 169/367 (46%), Positives = 235/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ K IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R LIL PTRELAAQV +N Y ++ L A++ GG+ Q ++L Sbjct: 61 ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYSRHLPLNSAVVFGGVKINPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ + NP I VN +STA T+E A KK +L +L+ Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYP--ADVKKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L L +Q AIHGN Q +R K L++FK G I+++ Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQE 364 >gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 448 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 172/374 (45%), Positives = 240/374 (64%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL+ +V AV ++GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEK-----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L A + P R L+L PTRELAAQV ++ YGK NL A++ GG+ Sbjct: 61 HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINP 120 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q K L+ G D+L+ TPGR+LDH +G + +N+I+ILV+DEADRMLDMGFI I+ + + + Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAAL 180 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT ++E++ +++ L +P IEV +ST E IE KK + Sbjct: 181 PKNRQNLLFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPV--DRDKKHPM 238 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++S + ++F K L LEK G S AIHGN Q +R + LS FK+G Sbjct: 239 LAHLIKS-NNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDG 297 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++Q++VA+D+AARG+DI + HV N+D+PN E+Y+HRIGRTGRAG G+A +LV +++ Sbjct: 298 SLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEL 357 Query: 355 KHIDAIEKLIEKKV 368 + + IEKLI++K+ Sbjct: 358 EMLKDIEKLIKRKL 371 >gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054] gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia HI2424] gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia MC0-3] gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU 1054] gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia HI2424] gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia MC0-3] Length = 520 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 173/372 (46%), Positives = 240/372 (64%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ A+++ GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 35 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q+ Sbjct: 95 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSA 154 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 155 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++ Q Sbjct: 215 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 272 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L +LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 273 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 331 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 391 Query: 358 DAIEKLIEKKVD 369 IEKLI++ +D Sbjct: 392 ADIEKLIKRPLD 403 >gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 578 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 179/424 (42%), Positives = 258/424 (60%), Gaps = 17/424 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV + GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG +A+ R L+L PTRELAAQV+++ E YGK L A++ GG+P Q +KL Sbjct: 61 ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR+LD + + N +E+LV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++++++ + P I V ++ A T++ ++K ALL QL+ Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPV--DKNQKSALLIQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D + ++F K L SL + S AIHGN Q +R K L++FK G ++++ Sbjct: 239 KQED-WQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV+ E+ K + Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRD 357 Query: 360 IEKLIEKKVDWLNGD---------LSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGF 406 IE+LI + ++ + S+LN ++ I +Q H P P+ +G Sbjct: 358 IERLINRVLERQEVEGFSPVHTLPESTLNAHGKENKIKAVASQRKHRSAGKPAPRAGSGR 417 Query: 407 DRRK 410 D RK Sbjct: 418 DGRK 421 >gi|330967974|gb|EGH68234.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 629 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 171/406 (42%), Positives = 255/406 (62%), Gaps = 15/406 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKN 396 K + +IE++ ++K+ D + D++++ EK ++ + RK+ Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFDITAVE--AEKPEVRERPDVRKS 401 >gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3] gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3] Length = 444 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 171/371 (46%), Positives = 241/371 (64%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGLS +++ AV GY + TPIQ K IPLVLQ HD+ AQTGTGKTA F LP+L Sbjct: 1 MLFKDLGLSAELLRAVEKQGYDEATPIQQKAIPLVLQGHDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ V+ P+ L+L PTRELAAQV ++ YG+ A++ GG+ Q +K Sbjct: 61 QRLQSKYQDVQKSFPKVLVLTPTRELAAQVHESVRDYGRYLPFRSAVIFGGVSINPQKQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+++ TPGR+LDH + + ++ IEILV+DEADRMLDMGFI I+ + ++P R Sbjct: 121 LIKGVDIVVATPGRLLDHVQQRSIDLSRIEILVLDEADRMLDMGFIHDIRRVMKVIPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT + E++K++ FL+ P++I+V TP +TA T+ V + K+ L QQ+ Sbjct: 181 QTLLFSATFSSEIKKLASEFLEQPEQIQV-TPQNTATTLVSQLVYPVDKNRKRELLSQQI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + +IF K L L+K G S AIHGN Q +R + L +FK GTI+ Sbjct: 240 --GEGNWQQVLIFTRTKHGANKLAEQLDKDGISAAAIHGNKSQGARTRALGDFKAGTIRA 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NF++PN E+YIHRIGRT RAG+ G A +LV +++K + Sbjct: 298 LVATDIAARGIDIDKLPHVVNFELPNVPEDYIHRIGRTARAGQQGHAISLVCVDELKLLR 357 Query: 359 AIEKLIEKKVD 369 IEKL+ K ++ Sbjct: 358 DIEKLLGKDIE 368 >gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae PB90-1] gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1] Length = 403 Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 169/368 (45%), Positives = 234/368 (63%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL + AV YV+PTPIQ + IP+VL+ DV G AQTGTGKTA+F LP++ Sbjct: 5 FSKLGLQDALAYAVQKMDYVEPTPIQAQAIPIVLKGGDVIGSAQTGTGKTAAFALPIIQR 64 Query: 63 LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L GR R LILEPTRELA QV + F K+ K +L V ++ GG+ + Q L+R Sbjct: 65 LSTHGRLRC-----LILEPTRELALQVEEAFHKFAKFTDLRVTIVYGGVGYGKQTSDLKR 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+L TPGR+LDH +G + ++EILV+DE DRMLDMGF+P ++ I P RQTL Sbjct: 120 GMDILAATPGRLLDHLGQGNCSLEDVEILVLDEVDRMLDMGFLPDVRKIVQRCPKARQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSAT+ EL++++ L NP ++E+ S AET+ H F A S+K LLQ LL+ Sbjct: 180 FFSATLPPELEQLAGWALHNPTKVEIGRVRSPAETVSHGFYPVVA--SQKFDLLQLLLER 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K+ +IFC + + H L+ +G +V +H + QR R++ L FK G +++VA Sbjct: 238 TE-FKSVLIFCRTRMGADRIAHRLKTKGHTVGVMHSDRSQRERIEALDGFKSGKFEVLVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HV N+DVP E+Y+HRIGRTGRA G AFTLV +ED++ +IE Sbjct: 297 TDIAARGLDIAGVSHVINYDVPENPEDYVHRIGRTGRAHHTGDAFTLVTEEDVRDARSIE 356 Query: 362 KLIEKKVD 369 + + V+ Sbjct: 357 RYMGMAVE 364 >gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396] gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396] Length = 453 Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 163/369 (44%), Positives = 241/369 (65%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ A+ + GY P+PIQ++ IP+VL+ DV AQTGTGKTA+F LP+L Sbjct: 1 MSFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG RAR R LIL PTRELAAQV + Y L ++ GG+ Q +L Sbjct: 61 ERLSKGDRARSNQARALILTPTRELAAQVGECVSIYSSKLPLRSTVVFGGVKINPQMMRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DV++ TPGR+LD +N+ + ++E+LV+DEADRMLDMGFI I+ I ++P RQ Sbjct: 121 RRGVDVIVATPGRLLDLYNQNAVRFQDLEVLVLDEADRMLDMGFIHDIRKILDILPKRRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +++++K+++ + NP I V+ P++TA+T++ +K ALL QL+ Sbjct: 181 NLMFSATFSNDIRKLAKELVNNPVEISVSPPNTTAKTVKQWIHPV--DKKQKSALLTQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L L +G + AIHG+ Q +R K L++FK G++Q++ Sbjct: 239 RD-NNWDQALVFSRTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSVQIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+P AE+Y+HRIGRTGRAG G+A +LV+ ++ K + Sbjct: 298 VATDIAARGIDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLVSADEFKLLAD 357 Query: 360 IEKLIEKKV 368 IE+LI+K++ Sbjct: 358 IERLIQKRL 366 >gi|312963578|ref|ZP_07778059.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6] gi|311282087|gb|EFQ60687.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6] Length = 628 Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 169/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV D+F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A S K + Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAA--SHKRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-THGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G+++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GSVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|91775307|ref|YP_545063.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91775451|ref|YP_545207.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91709294|gb|ABE49222.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91709438|gb|ABE49366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|167042456|gb|ABZ07182.1| putative DEAD/DEAH box helicase [uncultured marine microorganism HF4000_ANIW133B20] Length = 515 Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 170/374 (45%), Positives = 245/374 (65%), Gaps = 5/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DLGL+ ++ A+ D GY PTPIQ + IPLVL D+ AQTGTGKTA F LP+L Sbjct: 12 LQFSDLGLAEPILRAIADTGYTHPTPIQAQAIPLVLNGGDLLAGAQTGTGKTAGFTLPVL 71 Query: 61 TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L +V+ PR LIL PTRELAAQV ++ + YGK+ LT ++ GG+ Q ++ Sbjct: 72 HLLHAKPVKVKPGQPRCLILTPTRELAAQVEESVQTYGKHLKLTSMVMFGGVGINPQIER 131 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++ D+L+ TPGR+LDH + + ++ IEILV+DEADRMLDMGFI I+ + +L+P R Sbjct: 132 LKKPLDILVATPGRLLDHAAQKTIDLSAIEILVLDEADRMLDMGFIRDIKRVLALLPKKR 191 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +DE++++++ L NP +EV ++ +E +E V +Q K+ L+ L Sbjct: 192 QNLLFSATFSDEIKELADGLLHNPGFVEVARRNTASELVEQA-VHLVSQGHKRD-LVAHL 249 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ D K +IF K L L K G + AIHGN Q +R K L+ FK GT+ + Sbjct: 250 IRHHD-WKQVLIFTRTKHGANRLAEKLSKDGIAAAAIHGNKSQSARTKALAEFKNGTLPV 308 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV E+IK + Sbjct: 309 LVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGCSGAAVSLVDGEEIKLLK 368 Query: 359 AIEKLIEKKVDWLN 372 IE+LI++++ L+ Sbjct: 369 GIERLIKREIPRLD 382 >gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786] Length = 411 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 176/386 (45%), Positives = 240/386 (62%), Gaps = 10/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ D GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG +VLI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++TA + V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L +K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKK--VDWLNGDLSSLNPP 381 IEKLI++ ++ L DL PP Sbjct: 370 ADIEKLIKRALPLEALELDLPRHRPP 395 >gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226] gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226] Length = 464 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386 >gi|320330891|gb|EFW86865.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. glycinea str. race 4] Length = 625 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 168/382 (43%), Positives = 244/382 (63%), Gaps = 12/382 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDL 375 K + +IE++ ++K+ +GDL Sbjct: 358 EKLLKSIERMTKQKI--ADGDL 377 >gi|109898452|ref|YP_661707.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c] gi|109700733|gb|ABG40653.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica T6c] Length = 435 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 162/367 (44%), Positives = 236/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLSP ++ AV GY P+PIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G AR R L+L PTRELAAQVA + YGK+ L A++ GG+ Q KL Sbjct: 61 ELLNRGTHARGNQARALVLTPTRELAAQVAASVVDYGKDLPLRSAVVFGGVGINPQMIKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD +N+ + +++EILV+DEADRMLDMGFI I+ + L+P RQ Sbjct: 121 RKGVDILVATPGRLLDLYNQNAVRFDDLEILVLDEADRMLDMGFIHDIKKVLKLLPTKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +D+++ +++ + NP + V+ P++T E +E FV + K AL++ + Sbjct: 181 NLLFSATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQ-FVCPVDKNQKTPALIRMI- 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K + LE +G + AIHGN Q +R K L+ FK G ++ + Sbjct: 239 -KDNDWQQVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRAL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N+D+PN AE+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 VATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLAD 357 Query: 360 IEKLIEK 366 IE+ ++ Sbjct: 358 IERFTKQ 364 >gi|320322003|gb|EFW78099.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. glycinea str. B076] Length = 625 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 168/382 (43%), Positives = 244/382 (63%), Gaps = 12/382 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDL 375 K + +IE++ ++K+ +GDL Sbjct: 358 EKLLKSIERMTKQKI--ADGDL 377 >gi|91782534|ref|YP_557740.1| putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400] gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400] Length = 491 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 172/372 (46%), Positives = 240/372 (64%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ AV ++GY PTPIQ + IP+VL D+ G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N + Y K+ L A++ GG+ Q++ Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L++P+ IEV +STA + V A+ K A++Q Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQ-IVYEVAEGDKTGAVVQ- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + +K I+FCN K L SLE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRERGLKQVIVFCNSKIGASRLSRSLERDGVIATAIHGDRSQNERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVD 369 IEKLI++ ++ Sbjct: 370 ADIEKLIKRPLE 381 >gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter aquaeolei VT8] gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8] Length = 443 Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 175/400 (43%), Positives = 246/400 (61%), Gaps = 5/400 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++V A D GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + PR LIL PTRELAAQV D+ Y K A++ GG+ Q KL Sbjct: 61 QRLAENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQMMKLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGR++D + + + N +EILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++E++ +++ L NP ++EV ++TAE ++ S+K ALL +L++ Sbjct: 181 LLFSATFSNEIRTLAQGLLDNPVQVEVAARNTTAEKVKQSVYPV--DQSQKTALLSKLVR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++F K L LEK G + AIHGN Q +R + L++FK G ++++V Sbjct: 239 D-NAWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV+ ++ K + I Sbjct: 298 ATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLLAGI 357 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398 EKLI+K++ + G N PL+ A + AR P Sbjct: 358 EKLIKKQLPRKEVEGFEPKNNLPLKPKAKADPSKARNRRP 397 >gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51] gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51] Length = 464 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386 >gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1] gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1] Length = 473 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 173/384 (45%), Positives = 244/384 (63%), Gaps = 8/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ + AV D GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 FSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + R P R L+L PTRELA QVA Y K+ L ++ GG+ + Q Sbjct: 65 LMRHENASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTL 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH +++N +E +V+DEADRMLD+GF+P +Q I S +P + Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKS 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQ+P IEV P+ TA T+E F + K+ A ++ Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKV-SDDDKRYA-IRS 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ +D ++ IF N K L +LE+ G A+HG+ Q R+K L FK G + Sbjct: 243 VLKERD-IRQAFIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLKALEAFKAGEVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFN+DVP AE+Y+HRIGRTGRAG G A TLV D +++ Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNV 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP 381 IEKLI+KK+D + L PP Sbjct: 362 ADIEKLIKKKIDVEPAPMLDLRPP 385 >gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis VL426] gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis VL426] Length = 464 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386 >gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)] gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)] Length = 464 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386 >gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147] Length = 408 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 177/397 (44%), Positives = 244/397 (61%), Gaps = 22/397 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ D GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG +VLI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++TA + V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L +K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLE--KIDIAQHNH 392 IEKLI++ + PLE ++D+ +H H Sbjct: 370 ADIEKLIKRAL------------PLEALELDLPRHRH 394 >gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3] gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3] Length = 464 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386 >gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599] gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599] Length = 546 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 167/372 (44%), Positives = 237/372 (63%), Gaps = 7/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D GL P V+ AV AGY KPTPIQ K IP+V+ HDV AQTGTGKTA F LP++ + Sbjct: 20 FSDFGLHPDVLKAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTAGFALPIINV 79 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + P R LI+ PTRELA Q+ DN + Y + L A + GG+ + Q Sbjct: 80 LMPSASHSASPARHPVRALIIAPTRELADQIHDNVKTYIQFTPLRSAAVFGGVDMQPQTN 139 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++LI TPGR+LDH + + ++ +++LV+DEADRMLDMGF+P IQ I +L+ Sbjct: 140 ALRAGVEILIATPGRLLDHVQQKSVNLSQVQLLVLDEADRMLDMGFLPDIQRIINLLNPR 199 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ L+FSAT +DE++K+++ FL PK IEV P++ AE +E ++ K+ A+ Sbjct: 200 RQNLMFSATFSDEIRKLAKRFLNEPKLIEVARPNTLAENVEQTVYHVPSEDLKRDAV--G 257 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + ++ I+F N K L L+K+GF AIHG+ Q+ R+K L FK G I+ Sbjct: 258 ALIRERGIEQVIVFSNTKIGAGRLARHLQKEGFLAEAIHGDKSQQERLKTLDGFKAGEIK 317 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+D+P+ E+Y+HRIGRTGRAG G A +L+ D K + Sbjct: 318 VLVATDVAARGLDIAELPAVINYDLPHSPEDYVHRIGRTGRAGASGMALSLMVDHDQKAL 377 Query: 358 DAIEKLIEKKVD 369 IEKL ++K+D Sbjct: 378 AEIEKLTKRKLD 389 >gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93] gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93] Length = 464 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386 >gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341] gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341] gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3894-4] Length = 464 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386 >gi|71736442|ref|YP_272752.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. phaseolicola 1448A] gi|298485028|ref|ZP_07003125.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71556995|gb|AAZ36206.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|298160438|gb|EFI01462.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 625 Score = 325 bits (834), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21] gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21] Length = 464 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386 >gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2] gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2] Length = 464 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386 >gi|237798154|ref|ZP_04586615.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021006|gb|EGI01063.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 629 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 169/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + +IF K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKIP--DGDLMGFD 381 >gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80] gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80] Length = 464 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVMNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386 >gi|28872183|ref|NP_794802.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato str. DC3000] gi|213971879|ref|ZP_03399980.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato T1] gi|301385283|ref|ZP_07233701.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato Max13] gi|28855437|gb|AAO58497.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213923363|gb|EEB56957.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato T1] gi|331015971|gb|EGH96027.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 629 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|330878076|gb|EGH12225.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 629 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] Length = 431 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 166/365 (45%), Positives = 237/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ AV D GY P+PIQ + IP V+ DV AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLSAPILDAVADQGYDTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L G+ A+ R LIL PTRELAAQV ++ YGKN L A++ GG+ Q KL Sbjct: 61 ELLIPGKLAQANQARVLILTPTRELAAQVGESVATYGKNLPLRSAVVFGGVKINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVL+ TPGR+LD +N+ + +++E+LV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 RQGVDVLVATPGRLLDLYNQRAVKFDHLEVLVLDEADRMLDMGFIHDIKKILAVLPKKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +++++ +++ + NP I V+ ++T E+++H ++K LL L+ Sbjct: 181 NLLFSATFSNDIRGLAKGLVNNPVEISVSPANTTVESVQHWIYPV--DKNQKSKLLIHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++F K L L+ G + AIHGN Q +R K L++FK G +Q++ Sbjct: 239 QD-NQWSQVLVFSRTKHGANKLAKQLDGAGINAAAIHGNKSQGARTKALADFKGGKVQVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV+ ++ K + Sbjct: 298 VATDIAARGLDIEQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVSADEFKQLSD 357 Query: 360 IEKLI 364 IE+LI Sbjct: 358 IERLI 362 >gi|330984676|gb|EGH82779.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 625 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|330899330|gb|EGH30749.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 629 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|330886235|gb|EGH20136.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. mori str. 301020] Length = 625 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVSRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|330951359|gb|EGH51619.1| helicase [Pseudomonas syringae Cit 7] Length = 629 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|302063416|ref|ZP_07254957.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato K40] Length = 629 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|289647882|ref|ZP_06479225.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. aesculi str. 2250] Length = 625 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|302186251|ref|ZP_07262924.1| helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae 642] Length = 629 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587] gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587] Length = 464 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRAYQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386 >gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein [Desulfurispirillum indicum S5] gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum S5] Length = 457 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 176/420 (41%), Positives = 259/420 (61%), Gaps = 18/420 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGLS ++ AV GY +PTP+Q + IP +LQ D+ AQTGTGKTA F LPML Sbjct: 1 MLFSDLGLSAPILRAVAAEGYTQPTPVQQQAIPAILQGRDIQAGAQTGTGKTAGFTLPML 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ILE+ R R R LIL PTRELAAQV ++ YGK+ +L A++ GG+ Q L Sbjct: 61 EILERQAIRGRRHVRALILTPTRELAAQVEESVRTYGKHLSLKSAVIFGGVAMGPQLANL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+++ TPGR+LDH + + ++ +E LV+DEADRMLDMGFI I+ + +L+P RQ Sbjct: 121 RRGVDIVVATPGRLLDHVQQKSIDLSKVEFLVLDEADRMLDMGFIHDIRKVLALLPKERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E+ +++ +F+++P ++EV ++ AET++ V +K LL +L+ Sbjct: 181 NLLFSATFSREITELASSFMKDPVQVEVARRNTAAETVDQ--VVHLVDRERKRELLSKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ + ++F K L LEK G AIHGN Q +R K L++FK+G ++++ Sbjct: 239 -SEGKWQQVLVFTRTKHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKKGQVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI ++ HV NF++PN E+Y+HRIGRTGRAG GKA +LV ++ + + Sbjct: 298 VATDIAARGLDIDELPHVVNFELPNVPEDYVHRIGRTGRAGNCGKACSLVCVDEKQLLKG 357 Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNH------------ARKNNPIPQKSTG 405 IE L+++ + + + G + P E I ++N A+ P STG Sbjct: 358 IEGLLKRDIPQEHIKGFEPDPSIPAEPIQNGRNNRQGQGRARSGAQPAKSARAFPSTSTG 417 >gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster bacterium] Length = 434 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 164/370 (44%), Positives = 244/370 (65%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ AV GY KP+PIQ K+IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MGFSKLGLSDSILKAVKQQGYDKPSPIQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG+ RTLIL PTRELAAQV D+ YGK+ L ++ GG+ Q KKL Sbjct: 61 QLLSKGKPTNSNQVRTLILTPTRELAAQVQDSVATYGKHLPLKSTVVFGGVKINPQMKKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD +++ + + +EI+V DEADRMLDMGFI I+ I ++P RQ Sbjct: 121 RGGVDILVATPGRLLDLYSQNAVKFDQLEIIVFDEADRMLDMGFIHDIKRILKVLPPKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT +DE++K++++ + NP + ++T ++++ SKK ALL +L+ Sbjct: 181 TLMFSATFSDEIRKLAKSLVHNPVEVSTTPRNTTVKSVKQWIHPV--DKSKKQALLTKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K + L K+G + AIHGN Q +R + L++FK+G + ++ Sbjct: 239 KDH-SWYQVLVFSRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRALADFKDGKVNVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI ++ HV NFD+P+ E+Y+HRIGRTGRAG G+A +LV+ +++K + Sbjct: 298 VATDIAARGIDIIELPHVVNFDLPHVPEDYVHRIGRTGRAGSKGEAISLVSADEVKQLFD 357 Query: 360 IEKLIEKKVD 369 IE+LI+ K+D Sbjct: 358 IERLIQNKLD 367 >gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39] gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39] Length = 464 Score = 325 bits (833), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 249/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNLLPESKLD 386 >gi|325273080|ref|ZP_08139385.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp. TJI-51] gi|324101781|gb|EGB99322.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp. TJI-51] Length = 630 Score = 325 bits (833), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 170/386 (44%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV D+F+ Y ++ L A + GG+ Sbjct: 61 ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + +G DVL+ PGR+LD +GK+ + ++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ +++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L LEK G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A ++VA ++ Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ +++ +GDL + Sbjct: 358 EKLLKSIERVTRQRIP--DGDLMGFD 381 >gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG 19424] gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG 19424] Length = 516 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 167/378 (44%), Positives = 243/378 (64%), Gaps = 12/378 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY PTPIQ + IP +L+ D+ AQTGTGKTA F LPML Sbjct: 1 MSFSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60 Query: 61 TILEKGRARVR---------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111 +L + AR R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 61 QLLSETAARQAGGAQRGGRVAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG 120 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 Q ++L+RG ++++ TPGR+LDH ++ + ++ +E+LV+DEADRMLDMGFI I+ I Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 +++P RQ LLFSAT +D+++ +++ L NP IEV ++TAET++ +K Sbjct: 181 NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPV--DRERK 238 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L++ D + ++F K L L K G S AIHGN Q +R + LS F Sbjct: 239 RELLAHLVRQHDWHQV-LVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEF 297 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K GT++L+VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV Sbjct: 298 KAGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCV 357 Query: 352 EDIKHIDAIEKLIEKKVD 369 +++ + IE+LI++K++ Sbjct: 358 DELGLLRDIERLIKRKLE 375 >gi|302134631|ref|ZP_07260621.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 629 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|66043725|ref|YP_233566.1| helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63254432|gb|AAY35528.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 629 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax citrulli AAC00-1] gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1] Length = 489 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 169/372 (45%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ + AV + GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 FSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + R P R L+L PTRELA QVA Y K L ++ GG+ + Q Sbjct: 65 LLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTL 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P T Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKT 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQNP IEV P+ TA T+E F + ++ + Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRA--IHH 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+++ +K +F N K L +LE++G A+HG+ Q R+K L FK G + Sbjct: 243 VLRTRG-VKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFNFDVP AE+Y+HRIGRTGRAG G A TLV+ D + + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSSSDARLV 361 Query: 358 DAIEKLIEKKVD 369 IEKL +KK+D Sbjct: 362 ADIEKLTKKKID 373 >gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 491 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 169/372 (45%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ + AV + GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 FSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + R P R L+L PTRELA QVA Y K L ++ GG+ + Q Sbjct: 65 LLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTL 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P T Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKT 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQNP IEV P+ TA T+E F + ++ + Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRA--IHH 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+++ +K +F N K L +LE++G A+HG+ Q R+K L FK G + Sbjct: 243 VLRTRG-VKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFNFDVP AE+Y+HRIGRTGRAG G A TLV+ D + + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSSSDARLV 361 Query: 358 DAIEKLIEKKVD 369 IEKL +KK+D Sbjct: 362 ADIEKLTKKKID 373 >gi|330865776|gb|EGH00485.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 500 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|330957006|gb|EGH57266.1| helicase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 630 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 170/386 (44%), Positives = 244/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV D+F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGTN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + +IF K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ +K+ +GDL + Sbjct: 358 EKLLKSIERMTRQKIP--DGDLMGFD 381 >gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase domain-containing protein [Delftia acidovorans SPH-1] gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1] Length = 504 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 180/422 (42%), Positives = 262/422 (62%), Gaps = 20/422 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ + AV D GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 FSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + R P R L+L PTRELA QVA +Y K L ++ GG+ + Q Sbjct: 65 LMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKPQTL 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P T Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKT 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQ+P IEV P+ TA T+E F + + K+ A L+ Sbjct: 185 RTTLLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYSV-SDDDKRYA-LRS 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ +D ++ +F N K L +LE+ G A+HG+ Q R+K L FK G + Sbjct: 243 LLKQRD-IRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKRGEVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFN+DVP AE+Y+HRIGRTGRAG G A TLV D + + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHDARLV 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNP-PLEKI-DIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 IEKLI+KK++ + P P+E A H + + +P++S+G R+++ + Sbjct: 362 GEIEKLIKKKIN--------VEPCPMEDFRGSAPRGH--RFDELPRQSSGGYGRERDRGA 411 Query: 416 QK 417 ++ Sbjct: 412 ER 413 >gi|257483568|ref|ZP_05637609.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 514 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] Length = 406 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 175/413 (42%), Positives = 263/413 (63%), Gaps = 15/413 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL+P ++ AV +AGY +PTPIQ IP ++ DV G AQTGTGKTA+F LP L Sbjct: 4 FKDLGLAPAILSAVEEAGYTEPTPIQAGAIPHIIDGRDVIGSAQTGTGKTAAFALPALHR 63 Query: 63 L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +KG A PR L+L PTRELAAQV + FEKYGK+ L AL+ GG+ + Q ++L Sbjct: 64 LGKHQKGAA----PRCLVLGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQRQEL 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178 E GADV+I TPGR++DH + + N+++L++DE DRMLDMGFI ++ I R Sbjct: 120 EAGADVVIATPGRLIDHVQQRTADLRNVDLLILDEVDRMLDMGFIDDVKKIIKFCSKQGR 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+++E++++ L++P + + + AET++H A +K LL L Sbjct: 180 QTLLFSATVSEEIKRLIARSLKDPVEVAIAVKITPAETVKHEVYPVGAM--QKFDLLVAL 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++S + + + IIFC K + L++ + V A+H +++Q++R + L +FK+G I++ Sbjct: 238 IESME-VDSMIIFCRMKIGADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIKI 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGLDI +V HV N+DVP E+Y+HRIGRTGRA R G A T++A ++ +D Sbjct: 297 LVATDIASRGLDIANVTHVINYDVPEHPEDYVHRIGRTGRAQREGDAATILAPDEESKLD 356 Query: 359 AIEKLIEKKVDWLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 AIEK I++ + + S ++ P + D + R+ N S+ F RR+ Sbjct: 357 AIEKFIDQLIPQRKLESFSYIHQPRIREDSSSKPKRRRRN---SASSKFGRRR 406 >gi|51244788|ref|YP_064672.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54] gi|50875825|emb|CAG35665.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54] Length = 423 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 167/368 (45%), Positives = 234/368 (63%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ K IP++++ DV AQTGTGKTA+F LP+L Sbjct: 1 MSFNTLGLSAPLLKAVAEKGYDTPSPIQAKAIPVIMEGKDVMAAAQTGTGKTAAFTLPIL 60 Query: 61 TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + RV+ R LIL PTRELAAQ+ ++ YGK +LT A++ GG+ Q K+ Sbjct: 61 ELLSQSKRRVQANQARVLILTPTRELAAQIGESVTTYGKGLSLTSAVIFGGVNINPQMKR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+L+ TPGR+LD + + N +EILV+DEADRMLDMGFI I+ + + +P R Sbjct: 121 LRGGVDILVATPGRLLDLHRQNAIKFNRLEILVLDEADRMLDMGFINDIRKVLAFLPKER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q L+FSAT + + ++ NP I V P+ST E I+ C +K ALL QL Sbjct: 181 QNLMFSATFSSSINNLARGMFNNPVEISVTPPNSTVEIIDQCIYPV--DKKQKPALLIQL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + ++F K L L+K+G + AIHGN Q +R K L+ FK GT+Q+ Sbjct: 239 IRD-NKWGQTLVFSKTKHGANRLVGQLQKKGINAAAIHGNKSQSARTKALAEFKNGTVQI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV NFD+P+ E+YIHRIGRTGRAG G+A +LV ++ + Sbjct: 298 LVATDIAARGLDIDLLPHVVNFDLPHVQEDYIHRIGRTGRAGASGEAISLVCADEFALLA 357 Query: 359 AIEKLIEK 366 IE+LI+K Sbjct: 358 DIERLIKK 365 >gi|289625029|ref|ZP_06457983.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 516 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|323491944|ref|ZP_08097113.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546] gi|323313802|gb|EGA66897.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546] Length = 482 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 166/367 (45%), Positives = 237/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ D GY KP+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQDQGYDKPSPIQEQAIPAVLNGQDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ G R + R LIL PTRELAAQV +N KY + LT ++ GG+ Q KL Sbjct: 61 ERLDNGTRVKGNHVRALILTPTRELAAQVQENVFKYSRYQRLTSTVVFGGVKINPQMLKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G+D+++ TPGR+LD + + + + +E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGSDIVVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA TIE A KK +L +L+ Sbjct: 181 NLLFSATFSQEIRELAKGLVNNPVEISVSPENSTAVTIEQSIYP--ADKRKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++FC K L H L K+ + IHGN Q +R + L++FK G ++++ Sbjct: 239 KDGD-WKQVLVFCRTKHGANRLAHFLNKEEITAAPIHGNKSQGARTRALADFKSGDVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++PN +E+Y+HRIGRTGRAG GKA +LV ++ + Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAISLVEADEASDLFG 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|88859624|ref|ZP_01134264.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2] gi|88818641|gb|EAR28456.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2] Length = 455 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 167/369 (45%), Positives = 233/369 (63%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ AV + GY PTPIQ+ IP +++ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFARLGLSAPILDAVAEQGYDTPTPIQLAAIPAIIEGRDMMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG+ A R L+L PTRELAAQVA++ E YGKN LT ++ GG+ Q +L Sbjct: 61 ERLSKGKPAGNNQVRALVLTPTRELAAQVAESVELYGKNLKLTSFVVYGGVKVNPQMMRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR+LD FN+ + + +E+LV+DEADRMLDMGFI I+ I ++P RQ Sbjct: 121 RRGVDILVATPGRLLDLFNQRAVKFDQLEVLVLDEADRMLDMGFIHDIKKILKVLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++ +++ + +P + V ++TA T+E +KK ALL L+ Sbjct: 181 NLMFSATFSDDIRNLAKGLINDPVEVSVAPANTTAATVEQRL--HPVDKAKKPALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D K ++F K L LE + AIHGN Q +RMK L+ FK+G ++++ Sbjct: 239 LQND-WKQVLVFTRTKHGANRLVKQLEADKINAAAIHGNKSQSARMKALAGFKDGQVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLDI + V NFD+PN AE+Y+HRIGRTGRAG G A + V E+ K + Sbjct: 298 VATDIVARGLDIDQLPQVVNFDLPNIAEDYVHRIGRTGRAGASGHAISFVTTEEAKELAD 357 Query: 360 IEKLIEKKV 368 IE+LI + Sbjct: 358 IERLINATI 366 >gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80] gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52] gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395] gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457] gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2] gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286] gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33] gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9] gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236] gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10] gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101] gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1] gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27] gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757] gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80] gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52] gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457] gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395] gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2] gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395] gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9] gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33] gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286] gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236] gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10] gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101] gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27] gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1] gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757] Length = 451 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 248/391 (63%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG + R R LIL PTRELAAQ+ DN YG++ L A++ GG+ Q +++ Sbjct: 61 ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GAD+L+ TPGR++D +N+ + + +EILV+DEADRMLDMGFI I I L+P RQ Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + NP I V+ +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPDMLVKLV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L L +QG + AIHGN Q +R + L++FK G ++++ Sbjct: 239 K-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+L + + +N L+ P P K+D Sbjct: 358 IERLTQALLPRVN--LAGFEPTNQLPESKLD 386 >gi|330812324|ref|YP_004356786.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 622 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 169/386 (43%), Positives = 243/386 (62%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A S K A Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPA--SHKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris DX-1] Length = 473 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 185/463 (39%), Positives = 268/463 (57%), Gaps = 18/463 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+ + A+ + Y+ PTPIQ +TIPL L DV GIAQTGTGKTASF LP+L Sbjct: 10 FQDFGLADPISRALKEENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHR 69 Query: 63 LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R + + R L+L PTREL+ Q+ D+F YG++ +LT L IGG+P Q + L Sbjct: 70 LLQNRIKPTSKTCRVLVLSPTRELSGQILDSFNAYGRHIHLTATLAIGGVPMGRQVRSLM 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR+LD L + +E LV+DEADRMLDMGFI I+ I + +P RQT Sbjct: 130 GGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ ++E L++P R+ V SST E I + +S K A+L QLL+ Sbjct: 190 LFFSATMPKDIADLAEQMLRDPARVAVTPVSSTVERINQRVI--QLDHSAKPAVLAQLLK 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++F K + L + G + AIHGN Q R ++L+ F+ G ++ +V Sbjct: 248 DEK-VNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTLV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HVFNFD+PN E Y+HRIGRT RAG G A +L A E++ ++ I Sbjct: 307 ATDIAARGIDVDGVSHVFNFDLPNIPETYVHRIGRTARAGADGTAISLCAGEEMAYLRDI 366 Query: 361 EKLIE----KKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 EKLI+ K+ G ++ PP + + H H +N P + G +RR++ ++ Sbjct: 367 EKLIKVSLPKEDRRTPGAHAAPTPPPHRGPRQSPHGHPPRNGDAPTR--GKNRRRRGPAA 424 Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458 + P + + Q + + G +G AF+ KNR Sbjct: 425 GPARQPEASRHETAARPQ----HSGNGEGLQGV--AFLQRKNR 461 >gi|289676388|ref|ZP_06497278.1| helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 435 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62] gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62] Length = 446 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 166/375 (44%), Positives = 237/375 (63%), Gaps = 5/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF LGL P++V + D G PTPIQ + IP + DV G+AQTGTGKTA+F LPM+ Sbjct: 1 MDFDMLGLMPRLVKKLADQGITDPTPIQAQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI 60 Query: 61 TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + + R LIL PTRELA Q++DN Y + +L VAL++GG AQ K+ Sbjct: 61 DALMRAGVKPEPKTVRGLILAPTRELAKQISDNLRDYTQGSHLKVALVVGGAGIVAQMKR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG D+L+ TPGR++D +R L ++ LV+DEAD+MLD+GFI ++ I L+ R Sbjct: 121 LERGVDLLVATPGRLIDLLDRKALSLSETHYLVLDEADQMLDLGFIHALRKIAPLLADDR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATM ++ +++ +L++P R+EVN P A+ IE Y S+K LL +L Sbjct: 181 QTMLFSATMPKQMNELAAAYLRSPVRVEVNPPGKAADKIEQSL--HYIAKSEKPKLLIEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + + I+F K L +LEK GF +IHGN Q R + + F+EG + + Sbjct: 239 L-GKHKGERAIVFGRTKHGCEKLYKTLEKAGFDAVSIHGNKSQGQRERAIVAFREGKVTV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIPDV HV+NFD+PN ENY+HRIGRT RAG G A A +++ + Sbjct: 298 LVATDVAARGLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGAEGMAIAFCAPDEMSELR 357 Query: 359 AIEKLIEKKVDWLNG 373 +I+K+++ + +G Sbjct: 358 SIQKVMKMDIPVASG 372 >gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [marine gamma proteobacterium HTCC2207] gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [marine gamma proteobacterium HTCC2207] Length = 549 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 165/365 (45%), Positives = 232/365 (63%), Gaps = 4/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS ++ A+ GY P+PIQ K IP VL DV AQTGTGKTA F LP+L + Sbjct: 4 FKDLGLSAPILKAITAQGYDTPSPIQAKAIPAVLDGRDVMAAAQTGTGKTAGFTLPILQL 63 Query: 63 LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G RA+ RTLIL PTRELAAQV ++ YGK+ +L+ A++ GG+ Q KL R Sbjct: 64 LSAGKRAQPNQVRTLILTPTRELAAQVGESVATYGKHMSLSSAVVFGGVKINPQMMKLRR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVL+ TPGR++D +++ + +E+LV+DEADRMLDMGFI I+ I SL+P RQ L Sbjct: 124 GVDVLVATPGRLMDLYSQNAVKFTYLEVLVLDEADRMLDMGFIHDIKRIISLLPKRRQNL 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +FSAT +D+++K+++ + NP I V ++TA T+ +K +L +L+ Sbjct: 184 MFSATFSDDIRKLAKGLVHNPIEISVTPRNATAPTVTQSIYTV--DKKQKAGVLTRLIH- 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++F K L LE +G AIHGN Q +R K L+ FK G ++++VA Sbjct: 241 DNKWGQALVFTKTKHGANKLTKHLEAEGIVAAAIHGNKSQGARTKALAGFKAGEVRILVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V NFD+PN AE+Y+HRIGRTGRAG G A +LV+ +++ + IE Sbjct: 301 TDIAARGLDIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGSTGTAISLVSADEVDLLSDIE 360 Query: 362 KLIEK 366 +L +K Sbjct: 361 RLTQK 365 >gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia vietnamiensis G4] gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis G4] Length = 512 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 177/399 (44%), Positives = 249/399 (62%), Gaps = 17/399 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+P ++ A+++ GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 35 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 95 LLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQMA 154 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 155 ELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 214 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++ Q Sbjct: 215 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 272 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L +LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 273 LLRGRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIE 331 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 391 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396 IEKLI++ ++ +L+ P A+H H +N Sbjct: 392 ADIEKLIKRPLEV---QTLALDKP------ARHRHDERN 421 >gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 496 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 167/370 (45%), Positives = 236/370 (63%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ GY PT IQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFSSLGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 IL KG+ R R L+L PTRELAAQVAD+ E YG N L A++ GG+ Q L Sbjct: 61 EILSKGKPAQRGQVRALVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIAAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G D+L+ TPGR+LD N+ L + +EILV+DEADRMLDMGFI I+ + +++P RQ Sbjct: 121 KQGVDILVATPGRLLDLCNQRALSFSTLEILVLDEADRMLDMGFIRDIRKVLAMLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++++++ + NP I V ++TA T+ +V Q K L+ L Sbjct: 181 NLMFSATFSDDIRELAKGLVNNPVEISVTPRNATANTVTQ-WVTPVGQSDKTSVLID--L 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K + +LE AIHGN Q +R K L++FK G +Q+M Sbjct: 238 IKDNNWQQVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVM 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+PN +E+Y+HRIGRTGRAG G+A +LVA E++K + Sbjct: 298 VATDIAARGIDIDQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLVADEEVKLLHD 357 Query: 360 IEKLIEKKVD 369 IE+LI + +D Sbjct: 358 IERLIGRVID 367 >gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116] gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116] Length = 527 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 168/367 (45%), Positives = 235/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R L+L PTRELAAQV +N Y ++ LT A++ GG+ Q +L Sbjct: 61 ERLSNGPRVRSNHIRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +E+LV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILELLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT ++E++ +++ + NP I VN +STA T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSNEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYP--ADVKKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L L Q + AIHGN Q +R K L++FK G ++++ Sbjct: 239 KDGD-WKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668] gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177] gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346] gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668] gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346] Length = 481 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394 >gi|53718749|ref|YP_107735.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243] gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344] gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4] gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1] gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247] gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a] gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305] gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894] gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576] gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b] gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243] gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344] gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1] gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a] gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247] gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305] gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576] gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4] gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b] Length = 482 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394 >gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989] gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989] Length = 464 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 169/367 (46%), Positives = 233/367 (63%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV D GY P+PIQ K IP+VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFTTLGLSDPILKAVTDKGYDTPSPIQAKAIPVVLEGRDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 IL KG+ AR R L+L PTRELAAQVA++ E YGK+ L A++ GG+ Q KL Sbjct: 61 EILSKGQPARANQVRALVLTPTRELAAQVAESVETYGKHLKLRSAVVFGGVKINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR+LD + + N +EIL++DEADRMLDMGFI I+ I +P RQ Sbjct: 121 RGGVDILIATPGRLLDLHQQNAMSFNKLEILILDEADRMLDMGFINDIRKILKALPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++ +++ + P I V +STA T+ +K +LL +L+ Sbjct: 181 NLMFSATFSDDIRDLAKTIVNKPIEISVTPKNSTATTVTQWIHPV--DKKQKPSLLVELI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++F K L LEK AIHGN Q +R + L++FK G ++++ Sbjct: 239 Y-QHKWEQVLVFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTRALADFKAGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N D+PN AE+Y+HRIGRTGRAG G+A +LV+ ++I+ + Sbjct: 298 VATDIAARGLDIEQLPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADEIQQLQD 357 Query: 360 IEKLIEK 366 IE+LI+K Sbjct: 358 IERLIQK 364 >gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA] gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA] Length = 498 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 170/373 (45%), Positives = 239/373 (64%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL P V+ A+ ++GY KPTPIQ IP+V HDV G AQTGTGKTA F LP++ Sbjct: 20 FDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIHN 79 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QV DN KY K L A++ GG+ Q + Sbjct: 80 LLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 139 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++L+ TPGR+LDH + + ++ + +LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 140 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 199 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E+++++ ++L++P+ IEV ++TAE + + T K+ AL+ Sbjct: 200 RQTLLFSATFSPEIKRLAASYLRHPQTIEVARSNATAENVRQV-IYTVPDNHKQAALVHL 258 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q + I+F N K L +LE++G + AIHG+ Q RM+ L FK+GT Sbjct: 259 LRQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 318 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G A +L A D + Sbjct: 319 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 378 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 379 LLADIEKLIKRNL 391 >gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T] gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T] Length = 545 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 169/373 (45%), Positives = 240/373 (64%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGL P+++ AV DAGY +PTPIQ + IP+V+ DV G AQTGTGKTA F LP+L Sbjct: 1 MSFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + P R LIL PTRELA QV ++ + Y K+ L + GG+ Q Sbjct: 61 HRIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L RG +++I TPGR+LDH + + ++ +E+LV+DEADRMLDMGFIP I+ I +L+P Sbjct: 121 QAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ+LLFSAT +DE++++++ L+ P+ IEV + +ETI H V + K+ L Sbjct: 181 KQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHV-VHPVSSGMKRNLLA 239 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L DT ++F + K L H LE+ G S AIHG+ Q+ R L FK G Sbjct: 240 HLLRHKPDT--QALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGK 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGLDI ++ V NF++P+ AE+Y+HRIGRTGRAG HG A +LV+ E+ Sbjct: 298 LRVLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKH 357 Query: 356 HIDAIEKLIEKKV 368 + IEKLI+ ++ Sbjct: 358 WLSEIEKLIKLQI 370 >gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9] gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9] gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9] Length = 478 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394 >gi|76808776|ref|YP_332762.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b] gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b] Length = 559 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 90 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 149 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 150 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 209 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 210 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 269 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 270 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 327 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 328 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 386 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 387 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 446 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 447 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 471 >gi|332306494|ref|YP_004434345.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173823|gb|AEE23077.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 436 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 158/367 (43%), Positives = 235/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLSP ++ AV GY P+PIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G+ AR R L+L PTRELAAQV + YGK+ L A++ GG+ Q KL Sbjct: 61 ELLNRGKHARGNQARALVLTPTRELAAQVGASVVDYGKDLPLRSAVVFGGVGINPQMIKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD +N+ + +++E+LV+DEADRMLDMGFI I+ + L+P RQ Sbjct: 121 RKGVDILVATPGRLLDLYNQNAVRFDDLEVLVLDEADRMLDMGFIHDIKKVLKLLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +D+++ +++ + NP + V+ P++T E +E ++K L +++ Sbjct: 181 NLLFSATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQSICPV--DKNQKTPALIRMI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K + LE +G + AIHGN Q +R K L+ FK G ++ + Sbjct: 239 KDND-WQQVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRAL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N+D+PN AE+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 VATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLAD 357 Query: 360 IEKLIEK 366 IE+ ++ Sbjct: 358 IERFTKQ 364 >gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12J] gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J] Length = 493 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 170/373 (45%), Positives = 239/373 (64%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL P V+ A+ ++GY KPTPIQ IP+V HDV G AQTGTGKTA F LP++ Sbjct: 15 FDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIHN 74 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QV DN KY K L A++ GG+ Q + Sbjct: 75 LLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 134 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++L+ TPGR+LDH + + ++ + +LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 135 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 194 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E+++++ ++L++P+ IEV ++TAE + + T K+ AL+ Sbjct: 195 RQTLLFSATFSPEIKRLAASYLRHPQTIEVARSNATAENVRQV-IYTVPDNHKQAALVHL 253 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q + I+F N K L +LE++G + AIHG+ Q RM+ L FK+GT Sbjct: 254 LRQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 313 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G A +L A D + Sbjct: 314 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 373 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 374 LLADIEKLIKRNL 386 >gi|313200940|ref|YP_004039598.1| dead/deah box helicase domain-containing protein [Methylovorus sp. MP688] gi|312440256|gb|ADQ84362.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688] Length = 541 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 178/445 (40%), Positives = 270/445 (60%), Gaps = 12/445 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL+ ++ A+ DAGY PTPIQ++ IP VL D+ AQTGTGKTA F LP+L + Sbjct: 11 FAQLGLAEPILRAIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLLHL 70 Query: 63 LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ G+ + PR LIL PTRELAAQV ++ + YGK L ++ GG+ Q +L+ Sbjct: 71 LQGRPGKNKAGQPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLK 130 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+L+ TPGR+LDH N+ + ++ +EILV+DEADRMLDMGFI I+ + +L+P RQ Sbjct: 131 KPLDILVATPGRLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQN 190 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +DE++ +++ L NP +EV ++ +E +E + S K ++ L++ Sbjct: 191 LLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTV--HLVRQSHKRDMVSHLIK 248 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ + +IF K L L K G AIHGN Q +R K L+ FK+G++ ++V Sbjct: 249 -QNNWQQVLIFTRTKHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLV 307 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++PN AE+Y+HRIGRTGRAG G A +LV +E+IK + I Sbjct: 308 ATDIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDEEEIKLLKGI 367 Query: 361 EKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 E+LI++++ + ++ P P++K ++ R P+ G R+ + +Q Sbjct: 368 ERLIKREIPRV--EVEGFVPSPVDKSAASEEREPR----APRPRQGQPRQGQPRQNQARQ 421 Query: 420 IPLKESEKISKLQQDIQENDADSLG 444 ++S+ + +EN A G Sbjct: 422 SQPRDSQASPSQPRQPRENAARPGG 446 >gi|253998846|ref|YP_003050909.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp. SIP3-4] gi|253985525|gb|ACT50382.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4] Length = 538 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 178/445 (40%), Positives = 270/445 (60%), Gaps = 12/445 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL+ ++ A+ DAGY PTPIQ++ IP VL D+ AQTGTGKTA F LP+L + Sbjct: 11 FAQLGLAEPILRAIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLLHL 70 Query: 63 LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ G+ + PR LIL PTRELAAQV ++ + YGK L ++ GG+ Q +L+ Sbjct: 71 LQGRPGKNKAGQPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLK 130 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+L+ TPGR+LDH N+ + ++ +EILV+DEADRMLDMGFI I+ + +L+P RQ Sbjct: 131 KPLDILVATPGRLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQN 190 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +DE++ +++ L NP +EV ++ +E +E + S K ++ L++ Sbjct: 191 LLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTV--HLVRQSHKRDMVSHLIK 248 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ + +IF K L L K G AIHGN Q +R K L+ FK+G++ ++V Sbjct: 249 -QNNWQQVLIFTRTKHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLV 307 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++PN AE+Y+HRIGRTGRAG G A +LV +E+IK + I Sbjct: 308 ATDIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDEEEIKLLKGI 367 Query: 361 EKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 E+LI++++ + ++ P P++K ++ R P+ G R+ + +Q Sbjct: 368 ERLIKREIPRV--EVEGFVPSPVDKSAASEEREPR----APRPRQGQPRQGQPRQNQARQ 421 Query: 420 IPLKESEKISKLQQDIQENDADSLG 444 ++S+ + +EN A G Sbjct: 422 SQPRDSQASPSQPRQPRENAARPGG 446 >gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 112] Length = 400 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394 >gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a] gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a] Length = 486 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394 >gi|330972612|gb|EGH72678.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 498 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 167/386 (43%), Positives = 244/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGK F LP+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKAGGFALPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 14] Length = 409 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQAIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394 >gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae EF01-2] Length = 486 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 170/372 (45%), Positives = 234/372 (62%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ + AV + GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 FSNLMLAEPLARAVAEMGYTAMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + P R L+L PTRELA QVA Y ++ L ++ GGI + Q Sbjct: 65 LLRHESSSASPARHPVRALVLLPTRELADQVARQIALYARHTKLRSTVVFGGIDMKPQTL 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKE 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++L P IEV P++TA T+E F + A K + Q Sbjct: 185 RTTLLFSATFSPEIRRLASSYLHQPVTIEVARPNATAATVEQRFYS--ANDDDKRRAIHQ 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+++ +K IF N K L SLE++G A+HG+ Q R+K L FK G + Sbjct: 243 VLRTRG-LKQAFIFVNSKLGCARLARSLEREGLRTAALHGDRSQDERLKALQAFKSGDVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFNFDVP AE+Y+HRIGRTGRAG G A TLV+ D + + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSGSDARLV 361 Query: 358 DAIEKLIEKKVD 369 IEKLI KK D Sbjct: 362 ADIEKLIGKKTD 373 >gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 91] Length = 411 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394 >gi|73540223|ref|YP_294743.1| helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] Length = 506 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 168/372 (45%), Positives = 241/372 (64%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY PTPIQ + IP +L+ D+ AQTGTGKTA F LPML Sbjct: 1 MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60 Query: 61 TIL-EKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L E R P R L+L PTRELAAQV ++ YGK L ++ GG+ Q + Sbjct: 61 QLLSESAPQRQGKPAVRALVLTPTRELAAQVEESVRNYGKYVRLRSMVMFGGVGINPQIE 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++++ TPGR+LDH ++ + ++++E+LV+DEADRMLDMGFI I+ I +++P Sbjct: 121 QLRRGVEIVVATPGRLLDHVSQRTIDLSSVELLVLDEADRMLDMGFIHDIRKILNVLPPK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +D+++ +++ L NP IEV ++TAET+ +K LL Sbjct: 181 RQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVAQRVYPV--DRERKRELLAH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ D + ++F K L L K G S AIHGN Q +R + LS FK GT++ Sbjct: 239 LVREHDWHQV-LVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTLR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 LLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGLL 357 Query: 358 DAIEKLIEKKVD 369 IE+LI++K++ Sbjct: 358 RDIERLIKRKLE 369 >gi|331009646|gb|EGH89702.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 625 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 167/386 (43%), Positives = 244/386 (63%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ AGY +PTP+Q + IP VLQ D+ AQTGTGKT F P+L Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFAPPIL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R PR L+L PTRELAAQV ++F+ Y ++ A + GG+ Sbjct: 61 ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + + RG DVL+ PGR+LD +G + ++++EILV+DEADRMLDMGF+ ++ + + Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT ++++ ++ L NP+RIEV P++T E IE A + K + Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANH--KRS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L+K G + AIHGN Q +R K L++FK Sbjct: 239 LLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++MVA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 K + +IE++ ++K+ +GDL + Sbjct: 358 EKLLKSIERMTKQKI--ADGDLMGFD 381 >gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei DM98] Length = 409 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394 >gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei B7210] Length = 399 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394 >gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 477 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 173/402 (43%), Positives = 245/402 (60%), Gaps = 9/402 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL+ ++ AV GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG RA+ R L+L PTRELAAQV ++ YG N L A++ GG+ Q L Sbjct: 61 ELLSKGERAQRGQVRALVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIVPQLAAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + +EILV+DEADRMLDMGFI I+ + +L+P RQ Sbjct: 121 RNGVDILVATPGRLLDLCQQKAISFSKLEILVLDEADRMLDMGFIRDIKKVLALLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT ++E++++++ + NP I V ++TA T+ C ++K L +L+ Sbjct: 181 NLMFSATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPV--DKTRKSMALIELI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ D K ++F K L SLE G AIHGN Q +R K L++FK G +Q+M Sbjct: 239 KTND-WKQVLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVM 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+PN E+Y+HRIGRTGRAG G+A +LV E++K + Sbjct: 298 VATDIAARGIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHD 357 Query: 360 IEKLIEKKVDWLNGDLSSLNPPL---EKIDIAQHNHARKNNP 398 IE+LI + ++ L+ P E + N A+K NP Sbjct: 358 IERLINRVIE--RKQLAGFEAPFTIPEASSRSGGNSAKKPNP 397 >gi|323499382|ref|ZP_08104358.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] gi|323315567|gb|EGA68602.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] Length = 477 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 246/391 (62%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY KP+PIQ + IP VLQ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEQGYDKPSPIQEQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ G R + R L+L PTRELAAQV +N KY + LT ++ GG+ Q KL Sbjct: 61 ERLDNGTRVKGNHVRALVLTPTRELAAQVQENVFKYSRYQRLTSQVIFGGVKANPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVL+ TPGR+LD + + + + +E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGCDVLVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + +P + V+ +STA TIE A KK +L +++ Sbjct: 181 NLLFSATFSPEIRELAKGLVNDPVEVSVSKENSTAVTIEQSIYP--ADKRKKAPMLVKMI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++FC K L L K+G + IHGN Q +R + L++FK G ++++ Sbjct: 239 KDGD-WKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVKVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++PN +E+Y+HRIGRTGRAG GKA++LV + + Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAYSLVEAAEASELFG 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+LI++ + L +L P P K+D Sbjct: 358 IERLIQQVLPRL--ELEGFKPVNELPESKLD 386 >gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215] Length = 414 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 174/395 (44%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L +D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ALDLPRHRH 394 >gi|88707113|ref|ZP_01104807.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71] gi|88698625|gb|EAQ95750.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71] Length = 423 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 177/421 (42%), Positives = 252/421 (59%), Gaps = 6/421 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP +V A D GY +PTPIQ K +PLVL DV AQTGTGKTA+FVLP+L Sbjct: 1 MTFDALGLSPNLVKAANDRGYSQPTPIQTKAVPLVLDGQDVLAAAQTGTGKTAAFVLPIL 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G AR R RTL+L PTRELA+QV D+ YG+ +L A++ GG+ E Q + L Sbjct: 61 QRLAFVGGARGRQVRTLVLTPTRELASQVHDSVLTYGRYLDLRSAVVFGGVRAEPQIEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E G DVL+ TPGR+LD +G + + +E+LV+DEADRMLDMGFI ++ I ++P RQ Sbjct: 121 EPGVDVLVATPGRLLDLAQQGYVDFSALEVLVLDEADRMLDMGFIHDMRRIIEMLPINRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ +L P ++V +ST E +E A ++ K LL L Sbjct: 181 TLMFSATFSQEIRSLAARYLVEPVSVDVAPANSTTELVEQKAYAVDPEH--KSDLLMHLF 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++FC K L +L GF+ IHGN Q +R + L FK+G +QL+ Sbjct: 239 R-EGEWGQALVFCRTKHGANQLSKALLNAGFAAAPIHGNKSQNARQRALDAFKKGDLQLL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+DLAARGLDI + V NFD+P+ ++Y+HRIGRTGRAG G++ +LV+ +D + A Sbjct: 298 IATDLAARGLDIDQLPEVVNFDLPSVPQDYVHRIGRTGRAGATGRSHSLVSADDEPLLRA 357 Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 IE LI +++ + ++G + PP + + RK + RR + Sbjct: 358 IEVLIRREIPMEHVSGFEPTDRPPSSHNTGDREDRGRKTPGSAPRDAAVARRSREPGGSS 417 Query: 418 S 418 S Sbjct: 418 S 418 >gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu] Length = 487 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 173/372 (46%), Positives = 239/372 (64%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP+L Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N YGK+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYGKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++ Q Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+S+ +K I+FCN K L +LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 LLRSRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVD 369 IEKLI++ ++ Sbjct: 370 ADIEKLIKRPLE 381 >gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH] gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4] gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] Length = 481 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 173/395 (43%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L ++D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ELDLPRHRH 394 >gi|54302911|ref|YP_132904.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9] gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9] Length = 471 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 168/367 (45%), Positives = 238/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ AV GY P+PIQ + IP V++ DV AQTGTGKTA+F LP+L Sbjct: 7 MSFASLGLSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVL 66 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R + R L+L PTRELAAQVA++ Y KN L+ A++ GG+ Q +L Sbjct: 67 ERLSNGPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR+LD +N+ + + IE+LV+DEADRMLDMGFI I+ + + +P RQ Sbjct: 127 RQGADVLVATPGRLLDLYNQRAVRFDQIEVLVLDEADRMLDMGFIRDIRKLLAAMPKQRQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ + NP I V ++TA T++ S+K LL +LL Sbjct: 187 NLLFSATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPV--DKSRKANLLTKLL 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++F K L LE +G AIHGN Q +R K L+NFK IQ++ Sbjct: 245 K-ENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVL 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NF++P+ AE+Y+HRIGRTGRAG G+A +LV ++ K + A Sbjct: 304 VATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAA 363 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 364 IERLIKQ 370 >gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4] gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4] Length = 472 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 165/367 (44%), Positives = 237/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSVPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L G R R R LIL PTRELAAQV ++ Y ++ L A++ GG+ Q ++L Sbjct: 61 ELLSNGPRVRANHVRALILTPTRELAAQVQESVFTYSQHLPLNSAVVFGGVKINPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +++ + + +E+LV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILDLLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ + NP I VN +STA T+E + A+ KK +L +L+ Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPSDAK--KKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L L + AIHGN Q +R K L++FK G I+++ Sbjct: 239 KEGD-WRQVLVFTRTKHGANRLAKFLIDEKLPAAAIHGNKSQSARTKALADFKSGAIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P AE+Y+HRIGRTGRAG GKA +LV+ + + A Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEMGKAISLVSALEAPELFA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum 3TCK] gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum 3TCK] Length = 464 Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 167/367 (45%), Positives = 238/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ AV GY P+PIQ + IP V++ DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLSAPILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R + R L+L PTRELAAQVA++ Y KN L+ A++ GG+ Q +L Sbjct: 61 ERLSNGPRVKPNQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR+LD +N+ + + +E+LV+DEADRMLDMGFI I+ + +++P RQ Sbjct: 121 RQGADVLVATPGRLLDLYNQRAVRFDQLEVLVLDEADRMLDMGFIRDIRKLLAVMPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ + NP I V ++TA T++ S+K LL +LL Sbjct: 181 NLLFSATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPV--DKSRKANLLTKLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++F K L LE +G AIHGN Q +R K L+NFK IQ++ Sbjct: 239 K-ENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NF++P+ AE+Y+HRIGRTGRAG G+A +LV ++ K + A Sbjct: 298 VATDIAARGLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAA 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIKQ 364 >gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196] gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC 25196] Length = 472 Score = 322 bits (824), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 165/370 (44%), Positives = 231/370 (62%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L P ++ A+ DAGY PTPIQ + IP +L HDV AQTGTGKTA+F+LP L Sbjct: 1 MSFESLNLHPLILKAINDAGYTSPTPIQEQAIPELLTGHDVLASAQTGTGKTAAFMLPAL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L + R R PR L+L PTRELA QV++ KYGK V ++GG+P+ QNK Sbjct: 61 HRLASPSQVRSRGPRVLVLTPTRELALQVSEATAKYGKYLPRAKVVSILGGMPYPLQNKL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L + D+L+ TPGR++DH RG++ + +E+LV+DEADRMLDMGFI ++ I S P TR Sbjct: 121 LSQVVDILVATPGRLIDHIQRGRIDFSRLEMLVLDEADRMLDMGFIEDVERIASATPATR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+ + V+ L +PKRI+V T + IE S K LL L Sbjct: 181 QTLLFSATLDSAMDNVAARLLNSPKRIQVATSKARLNNIEQRL-HYVDDISHKNQLLDHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + +K I+F K++ L L QG + A+HG++ QR R + L ++G I++ Sbjct: 240 LRDIE-LKQAIVFTATKRDADMLADGLSAQGHAAAALHGDMSQRDRNRTLIKLRQGGIRV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ + HV NFD+P AE+Y+HRIGRTGRAG G A + + +D H+ Sbjct: 299 LVATDVAARGIDVAGITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASSKDGIHLK 358 Query: 359 AIEKLIEKKV 368 IE+ +++ Sbjct: 359 KIERFTGQRI 368 >gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43] Length = 397 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 173/395 (43%), Positives = 245/395 (62%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ K IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L++P+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L ++D+ +H H Sbjct: 370 ADIEKLIKRTL-----SLETL-----ELDLPRHRH 394 >gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] Length = 571 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 173/395 (43%), Positives = 244/395 (61%), Gaps = 18/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +++ A+ + GY PTPIQ IP+VL DV G AQTGTGKTASF LP++ Sbjct: 103 FDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 162 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 163 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 222 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 223 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 282 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV ++ A T+ V A+ K+ A+++ Sbjct: 283 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQ-IVYDVAEGDKQAAVVK- 340 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++K I+FCN K L +E+ G AIHG+ Q RM+ L FK G I+ Sbjct: 341 -LIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIE 399 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 400 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 459 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 IEKLI++ + L +L ++D+ +H H Sbjct: 460 ADIEKLIKRTL-----SLETL-----ELDLPRHRH 484 >gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12D] gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D] Length = 493 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 170/373 (45%), Positives = 238/373 (63%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL P V+ A+ ++GY KPTPIQ IP+V DV G AQTGTGKTA F LP++ Sbjct: 15 FDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFSLPIIHN 74 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QV DN KY K L A++ GG+ Q + Sbjct: 75 LLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 134 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++L+ TPGR+LDH + + ++ + +LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 135 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 194 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ ++L++P+ IEV ++TAE + + T K+ AL+ Sbjct: 195 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATAENVRQV-IYTVPDNHKQAALVHL 253 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q + I+F N K L +LE++G + AIHG+ Q RM+ L FK+GT Sbjct: 254 LKQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 313 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G A +L A D + Sbjct: 314 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 373 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 374 LLADIEKLIKRNL 386 >gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] Length = 491 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 170/374 (45%), Positives = 238/374 (63%), Gaps = 10/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGL P+++ AV ++GY PTPIQ + IP+VL DV G AQTGTGKTA F LP+L Sbjct: 1 MSFADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + + P R LIL PTRELA QV ++ + Y K L + GG+ + Q Sbjct: 61 QRLARHASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L G ++++ TPGR+LDH + + + +E+LV+DEADRMLDMGFIP I+ I L+P Sbjct: 121 IQDLRNGIEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ+LLFSAT +DE++K+++ L+ P+ IEV + +ETI H A + LL Sbjct: 181 AARQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGLKRN--LL 238 Query: 236 QQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LL+ + DT ++F K L H LE+ G + AIHG+ Q R L FK G Sbjct: 239 AHLLRHEPDT--QALVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++++VA+D+AARGLDI D+ V NF++P+ AE+Y+HRIGRTGRAGR G A +LV+ E+ Sbjct: 297 KLRVLVATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRQGNAVSLVSAEER 356 Query: 355 KHIDAIEKLIEKKV 368 H+ IEKLI+ ++ Sbjct: 357 HHLAEIEKLIKLQI 370 >gi|254513899|ref|ZP_05125960.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium NOR5-3] gi|219676142|gb|EED32507.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium NOR5-3] Length = 435 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 172/369 (46%), Positives = 233/369 (63%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LGL P + AV D GY +PTPIQIK+IPLVL DV AQTGTGKTA+FVLP+L Sbjct: 1 MNFDTLGLLPDLAKAVNDRGYTEPTPIQIKSIPLVLDGQDVLAAAQTGTGKTAAFVLPIL 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G A+ RTL+L PTRELAAQV + E YG+ +L A++ GG+ E Q L Sbjct: 61 QRLAFVGLAKAGQVRTLVLTPTRELAAQVHASVEAYGQYLDLRSAVVFGGVKAEPQIAAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D L+ TPGR+LD +G + + +E+LV+DEADRMLDMGFI I+ I +P RQ Sbjct: 121 ARGVDTLVATPGRLLDLAQQGAVDFSALEVLVLDEADRMLDMGFIHDIRRIVDQLPENRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT ++E++ ++ +L +P +EV +ST E ++ +A +K LL LL Sbjct: 181 TLMFSATFSNEIRALAAQYLIDPVSVEVAAANSTTELVQQ--MAYPVDRDRKTDLLIHLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +IFC K L L GF IHGN Q +R + L FK G +QL+ Sbjct: 239 KYHQ-WSQVLIFCRTKHGANRLTKKLLAAGFKAAPIHGNKSQNARQRALDEFKTGKLQLL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+P ++Y+HRIGRTGRAG G++ +L+A ED+ + Sbjct: 298 VATDIAARGLDINQLPEVVNFDLPCVPQDYVHRIGRTGRAGATGRSHSLLASEDLPLLQG 357 Query: 360 IEKLIEKKV 368 IE+LI+K + Sbjct: 358 IERLIQKAI 366 >gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia J2315] gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia J2315] Length = 494 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 171/373 (45%), Positives = 238/373 (63%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q+ Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++ Q Sbjct: 193 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L +LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDW 370 IEKLI++ ++ Sbjct: 370 ADIEKLIKRPLEM 382 >gi|299132277|ref|ZP_07025472.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] gi|298592414|gb|EFI52614.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] Length = 509 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 165/364 (45%), Positives = 233/364 (64%), Gaps = 5/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+ + A+ + YV PTPIQ +TIP+ + DV GIAQTGTGKTASF LP+L Sbjct: 4 FQDFGLADPISRALREENYVTPTPIQAQTIPIAITGRDVVGIAQTGTGKTASFALPILHR 63 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R R + R L+L PTREL+ Q+ D+F YG++ L+ AL IGG+P Q + + Sbjct: 64 LLENRVRPQPKTCRVLVLSPTRELSGQILDSFNAYGRHLRLSAALAIGGVPMGRQVRAMM 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G +VL+ TPGR+LD + +N +E LV+DEADRMLDMGFI I+ I + +P RQT Sbjct: 124 QGVEVLVATPGRLLDLVQGNAVRLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPVKRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ +++E+ L++P R+ V SSTAE I + +S K A L +LL+ Sbjct: 184 LFFSATMPKDIAELAEHMLRDPARVAVTPVSSTAERITQRII--QLDHSAKPATLSELLK 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + + ++F K + L K G AIHGN Q R ++L++F+ G I+ +V Sbjct: 242 S-EPVNRALVFTRTKHGADKVVRGLVKAGIPSEAIHGNKSQNHRERVLASFRNGDIRTLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HVFNFD+PN E Y+HRIGRT RAG G A +LVA E+ ++ I Sbjct: 301 ATDIAARGIDVDGITHVFNFDLPNIPETYVHRIGRTARAGADGTAISLVAGEENTYLRDI 360 Query: 361 EKLI 364 E+LI Sbjct: 361 ERLI 364 >gi|254443370|ref|ZP_05056846.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] gi|198257678|gb|EDY81986.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] Length = 469 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 181/413 (43%), Positives = 251/413 (60%), Gaps = 12/413 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL P++V AV GY +P+PIQ K IP +L+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MPFATLGLRPEIVSAVTAKGYTEPSPIQAKAIPAILEGRDVLGGAQTGTGKTAAFSLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + PR LIL PTRELAAQV + YGK +L A GG+ Q KL Sbjct: 61 QRLSESEFKNKRPRALILAPTRELAAQVHQSILDYGKGVDLHSACFFGGVNINPQISKLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+++ TPGR+LD R + + IE LV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RGLDIIVATPGRLLDLCQRREANLGAIETLVLDEADRMLDMGFIHDIRKILKLLPHDRQN 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSAT +++K++++ L+NP +EV +STA+ I + Q +K+ A L L++ Sbjct: 181 LFFSATYAKDVKKLADSILRNPVEVEVAPRNSTADQIAQ-EAYSIGQKNKREA-LSNLIK 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D K ++F K L L+ G + AIHGN Q +R + L +FK I+++V Sbjct: 239 DGD-WKQVLVFTRTKHGANRLAKQLDSDGITAAAIHGNKSQSARERALQDFKTNYIRVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI D+ HV NF++PN E+Y+HRIGRTGRAG+ GKA +LV E+ ++ I Sbjct: 298 ATDIAARGIDIIDLPHVVNFELPNIPEDYVHRIGRTGRAGKKGKAISLVCSEEEAYLVDI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 EK+++++V +LS P KI H R NP K T R + + Sbjct: 358 EKVLKREVPLF--ELS----PRGKIG---HQVQRIANPKKPKKTAVSRPPRQH 401 >gi|302879666|ref|YP_003848230.1| DEAD/DEAH box helicase domain-containing protein [Gallionella capsiferriformans ES-2] gi|302582455|gb|ADL56466.1| DEAD/DEAH box helicase domain protein [Gallionella capsiferriformans ES-2] Length = 504 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/406 (43%), Positives = 248/406 (61%), Gaps = 14/406 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA L L+ ++ A+ DAGY +PTP+Q + IPLVL D+ AQTGTGKTA F LP+L Sbjct: 10 VTFASLNLAEPIMRAIADAGYTQPTPVQAQAIPLVLAGGDLLAGAQTGTGKTAGFTLPVL 69 Query: 61 TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L A PR LIL PTRELAAQV ++ + YGK +L ++ GG+ Q K Sbjct: 70 HLLNSRPAANPGAGRPRCLILTPTRELAAQVEESVQTYGKYLSLKSLVMFGGVNINPQIK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L D+L+ TPGR+LDH + L ++ +EIL++DEADRMLDMGFI I+ I +L+P T Sbjct: 130 SLRGQVDILVATPGRLLDHVGQKTLDLSAVEILILDEADRMLDMGFIRDIKKILALLPKT 189 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT ++E++ +S+ L NP +EV ++T+E + V AQ K LL Sbjct: 190 RQNLLFSATFSEEIKTLSDGLLNNPGFVEVARRNTTSELVAQT-VHMVAQ-KLKSHLLSH 247 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ D K ++F K L L G AIHGN Q +R K LS FK+GT+ Sbjct: 248 LIKHND-WKQVLVFTRTKHGANRLAEKLNADGIPAAAIHGNKSQSARTKALSQFKDGTMP 306 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAG +G A +LV E+++H+ Sbjct: 307 VLVATDIAARGLDIDMLPHVVNFELPNVPEDYVHRIGRTGRAGSNGAAISLVDSEELQHL 366 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLE------KIDIAQHNHARKNN 397 IE+LI+ ++ + D S PP + QH R +N Sbjct: 367 KDIERLIKTQIPRIAID--SFVPPTHIPPEAPRPPRPQHGQKRHSN 410 >gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886] gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886] Length = 436 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 163/367 (44%), Positives = 236/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS ++ A+ + GY P+PIQ++ IP VL+ DV AQTGTGKTA FVLP+L Sbjct: 1 MGFTELGLSAPILRAIQEKGYDTPSPIQMQAIPAVLEGKDVMAAAQTGTGKTAGFVLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R LIL PTRELAAQ+ +N Y ++ L +++ GG+ Q L Sbjct: 61 ERLSNGGRTRPNHVRALILTPTRELAAQIHENAVVYSRHLPLRSSVVFGGVKINPQMMAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD + + + + +E+LV+DEADRMLDMGF I+ I L+P RQ Sbjct: 121 RKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT +DE++ +++ + NP I V +STA T+E C A KK A+L +L+ Sbjct: 181 SLLFSATFSDEIRNLAKGLVNNPVEISVTPANSTARTVEQCIYP--ADKKKKPAMLSKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L L ++G + IHGN Q +R K L++FK G ++++ Sbjct: 239 KDGD-WKQVLVFTRTKHGANKLARFLNEEGITAAPIHGNKSQSARTKALADFKTGDVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P+ AE+Y+HRIGRTGRAG GKA +LV ++ + Sbjct: 298 VATDIAARGIDIPQLPQVVNFEIPHVAEDYVHRIGRTGRAGEPGKAISLVCADEADDLFG 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] Length = 508 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 170/405 (41%), Positives = 249/405 (61%), Gaps = 16/405 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FA LGL+ ++ A+ ++GY PTPIQ + IPLVL D+ AQTGTGKTA F LP+L Sbjct: 6 NFAGLGLAEPLLRAISESGYTTPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLPVLH 65 Query: 62 ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LIL PTRELAAQV ++ YGK+ T ++ GG+ Q + Sbjct: 66 RLSAAPAANPKAGRPRCLILTPTRELAAQVEESVRTYGKHLPTTSMVMFGGVGINPQIQA 125 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++ D+L+ TPGR+LDH + L ++ +EIL++DEADRMLDMGFI I+ I +L+P R Sbjct: 126 LKKRVDILVATPGRLLDHVGQKTLDLSGVEILILDEADRMLDMGFIRDIRKILALLPKQR 185 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +DE++ ++ L NP +EV ++ +E ++ V + AQ K+ L+ Sbjct: 186 QNLLFSATFSDEIRSLANGLLHNPGCVEVARRNTASELVQQS-VYSVAQKQKRDLLVH-- 242 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L Q+ ++F K L L K G AIHGN Q +R + L+ FK+G++ + Sbjct: 243 LVKQNDWHQVLVFTRTKHGANKLAEYLAKHGIPSAAIHGNKSQSARTRALAEFKDGSLPV 302 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAG G A + V E+ +H+ Sbjct: 303 LVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSFVDSEERQHLT 362 Query: 359 AIEKLIEKKVDW----------LNGDLSSLNPPLEKIDIAQHNHA 393 AIE+LI++ +D ++ + S PP + ++HN+A Sbjct: 363 AIERLIKRTIDREALPAFAIAPVDPNESDARPPRQPRQPSRHNNA 407 >gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33300] gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33300] Length = 435 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 162/381 (42%), Positives = 243/381 (63%), Gaps = 5/381 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL L ++ A+ +GY PTPIQ + IP++ QR D+ AQTGTGKTA+F +P+L Sbjct: 18 LQFKDLKLIAPILKALEASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPIL 77 Query: 61 TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + + RTL+L PTRELA Q+ +NF+ Y K + ++ GG+ + Q Sbjct: 78 QMLTYSKEKTAQKRIRTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDA 137 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+LI TPGR+LD +N+G + + +E V+DEADRMLDMGFI ++ + S++P R Sbjct: 138 LRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKR 197 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM E+QK++ + L+ P ++EV S+TAE I+ + S K LL L Sbjct: 198 QTLLFSATMPAEIQKLASHILEEPSKVEVTPESTTAEKIQQSVY--FVSKSDKRHLLTHL 255 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+S++ +++ ++F K + L KQG AIHGN Q +R LSNFK+ +++ Sbjct: 256 LKSEN-IEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALSNFKDRKLRV 314 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI D+ +V NFD+PN E+Y+HRIGRTGRAG+ GKA + E+ ++ Sbjct: 315 LVATDIAARGIDIDDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAISFCDDEEYAYLL 374 Query: 359 AIEKLIEKKVDWLNGDLSSLN 379 IEK I ++ + SL+ Sbjct: 375 DIEKSIRMEIPRVEDQPYSLH 395 >gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase-like [Burkholderia sp. 383] gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383] Length = 527 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/400 (44%), Positives = 247/400 (61%), Gaps = 17/400 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 35 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 95 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 154 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG +VLI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 155 ELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++ Q Sbjct: 215 RQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 272 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L +LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 273 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIE 331 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 391 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397 IEKLI++ ++ +L+ P A+H H + N Sbjct: 392 ADIEKLIKRPLEM---QTLALDKP------ARHRHDERGN 422 >gi|300690871|ref|YP_003751866.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum PSI07] gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum PSI07] Length = 495 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 168/373 (45%), Positives = 239/373 (64%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL P ++ A+ ++GY +PTPIQ IP+V+ DV G AQTGTGKTA F LP++ Sbjct: 17 FDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQN 76 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QV DN KYGK L A++ GG+ Q + Sbjct: 77 LLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQTE 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++L+ TPGR+LDH + + ++ + +LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 137 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ ++L++P+ IEV ++TA+ + + T K+ AL+ Sbjct: 197 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQV-IYTVPDGHKQAALVHL 255 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q I+F N K L +LE++G + AIHG+ Q RM+ L FK+GT Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 315 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G A +L A D + Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 376 LLADIEKLIKRNL 388 >gi|24374899|ref|NP_718942.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24349603|gb|AAN56386.1|AE015775_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 409 Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 176/404 (43%), Positives = 251/404 (62%), Gaps = 12/404 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+ ++V + + GY +PTPIQ++ IP +L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60 Query: 61 TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + R L+L PTRELA QV +F KY K ++ V + GG+ EAQ Sbjct: 61 QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 G DVLI TPGR+LDH +G L +N + LV DEADRMLDMGF+ IQ + VP Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT+ D + S+N L++PKRIEV P++TA IE A + +K + Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDS--DRKTEFVSH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S++ + +IF K+ V L L K G + + HG++ Q +R K+L FK+G +Q Sbjct: 239 LVRSKN-WQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQ 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED + Sbjct: 298 VLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357 Query: 358 DAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395 + +E L++K++ W G D + + P P AQ A+K Sbjct: 358 EEVETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKAAQKQRAKK 401 >gi|253997010|ref|YP_003049074.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera mobilis JLW8] gi|253983689|gb|ACT48547.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8] Length = 502 Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 188/479 (39%), Positives = 278/479 (58%), Gaps = 30/479 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS ++ A+ DAGY PTPIQ IPLVL D+ AQTGTGKTA F LP+L + Sbjct: 11 FDSLGLSEPILRAINDAGYSAPTPIQANAIPLVLSGGDLLAGAQTGTGKTAGFTLPILHL 70 Query: 63 LEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L K A PR L+L PTRELAAQ+ ++ + YGK+ LT ++ GG+ Q +L Sbjct: 71 LSKKPRAEAAASRPRCLMLSPTRELAAQIEESVKTYGKHLPLTSTVIFGGVNANPQIARL 130 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++ D+L+ TPGR+LDH N+ + ++ IEILV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 131 KKPLDILVATPGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAILPKQRQ 190 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT ++E++ +++ L NP +EV ++ +E +E V Q K+ L+ L+ Sbjct: 191 NLLFSATFSEEIKALADGLLHNPGFVEVARRNTASELVEQT-VHMVPQAHKRD-LVTHLI 248 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L L K AIHGN Q +R K L+ FK+G+++++ Sbjct: 249 KHHD-WKQVLVFTRTKHGANRLAEKLIKDDIQAAAIHGNKSQGARTKALAQFKDGSMRVL 307 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV +E+IK + Sbjct: 308 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLVDREEIKLLKD 367 Query: 360 IEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNP-------IPQKSTGFDRRK 410 IEKLI++++ ++ G + NP E + ++ P P K+ + Sbjct: 368 IEKLIKREIPRVSVEGFTPAANPEPEAPRAPRPQQGQRRKPQENSKQATPAKNNAAAPSQ 427 Query: 411 KNYSSQ----KSHIPLKESEKISKLQQDI----QENDADSLGFRGNMPAFMLPKNRGKL 461 + SQ +S P+ E+ + + Q Q +++ G RGN NRG++ Sbjct: 428 QAKRSQPAQPRSQKPMSEAARHQAMPQSALFSPQPTNSNQRGNRGN-------SNRGQV 479 >gi|196231991|ref|ZP_03130847.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus Ellin428] gi|196224113|gb|EDY18627.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus Ellin428] Length = 405 Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 167/370 (45%), Positives = 229/370 (61%), Gaps = 11/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D GL +VV V GY+ PTPIQ++ P++L D+ G AQTGTGKTA+F LP+L Sbjct: 1 MSFQDFGLLDEVVHGVQSMGYIDPTPIQLRAFPIILSGRDMMGSAQTGTGKTAAFALPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T L K +R LILEPTRELAAQV F Y + ++ V L+ GG+ F +Q L+ Sbjct: 61 TKL-KSHGDLR---ALILEPTRELAAQVETAFRDYSRFMDVQVGLVHGGVGFGSQRSMLQ 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GADVL+ TPGR+LD G + NI+ LV+DE DRMLDMGF+P ++ I VP RQT Sbjct: 117 KGADVLVATPGRLLDFLEDGTANLKNIQYLVLDEVDRMLDMGFLPQVRRIVDRVPKERQT 176 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSAT+ EL+ +++ L++P+++E+ S AET+ H VA ++ ALL+ Sbjct: 177 LFFSATLPPELETMTKWLLKDPEQVEIGARRSPAETVTHALYPVAKDQKFDLLIALLE-- 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + IIF + K + H L+ SV +H N QR R L+ FK G ++ Sbjct: 235 ---RTKFDSAIIFTSTKIMADKVAHRLKDLKHSVAVLHSNRTQREREDALAGFKSGKYEV 291 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI V HV N+DVP E+Y+HRIGRTGRA G AFT+ E++ H+ Sbjct: 292 MVATDIAARGLDIAGVSHVINYDVPQHPEDYVHRIGRTGRALLTGDAFTIFTAEELDHVR 351 Query: 359 AIEKLIEKKV 368 +IE+ I K+ Sbjct: 352 SIERFIGAKI 361 >gi|124267275|ref|YP_001021279.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum PM1] gi|124260050|gb|ABM95044.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum PM1] Length = 453 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 171/373 (45%), Positives = 243/373 (65%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+ ++ A++DAGY PTPIQ + IP V+ D+ AQTGTGKTA FVLPML Sbjct: 1 MSFKELGLAEPLLQAIVDAGYETPTPIQKQAIPAVMLGGDLLAGAQTGTGKTAGFVLPML 60 Query: 61 TILEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L AR + P R LIL PTRELAAQV ++ YGK+ L+ ++ GG+ + Q Sbjct: 61 HRLMARPAVKDARGKSPVRALILTPTRELAAQVEESVRIYGKHAKLSSMVMFGGVGMQPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L+RG D+L+ TPGR+LDH + L ++++EI V+DEADRMLDMGFI I+ + ++VP Sbjct: 121 IDRLKRGVDILVATPGRLLDHHQQRTLDLSHVEIFVLDEADRMLDMGFIHDIKKVLAIVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE++ +++ L +P+ IEV +ST ETI KK LL Sbjct: 181 KQKQSLLFSATFSDEIKTLADRLLNSPQVIEVARRNSTVETIAQKI--HPVDRDKKKELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++SQD ++FC K L L Q + AIHGN Q +R K L++FK G Sbjct: 239 AHLIKSQD-WHQVLVFCRMKHGANRLTEYLNDQRITAMAIHGNKSQTARTKALADFKSGA 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+DI + HV NF++PN +E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGALGEAVSLVCVDEDG 357 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 358 FLRDIEKLIKRSI 370 >gi|187479813|ref|YP_787838.1| ATP-dependent RNA helicase [Bordetella avium 197N] gi|115424400|emb|CAJ50953.1| putative ATP-dependent RNA helicase [Bordetella avium 197N] Length = 477 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 170/386 (44%), Positives = 242/386 (62%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ + GY PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L + Sbjct: 7 FADLGLADSLLRAIAETGYTAPTPIQAQAIPQVLRGGDLLAAAQTGTGKTAGFTLPILHM 66 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + R PR LIL PTREL AQVA++ + YGK+ LT ++ GG+ Q L Sbjct: 67 LSQNKPAKRSAGRPRCLILTPTRELTAQVAESVQVYGKHTGLTSMVMFGGVNINPQISAL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ + +L+P +RQ Sbjct: 127 RKPVDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKSRQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE+++++ L NP + V TP +TA + V Q K+ L+ L+ Sbjct: 187 NLLFSATFSDEIRELARGVLHNPGEVSV-TPRNTATELVTQTVYLVDQAHKRD-LVSHLI 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ ++F K L L K G S AIHGN Q +R + L+ FK+G++ ++ Sbjct: 245 -SESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALAGFKDGSVAVL 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV +IK + A Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDSSEIKLLKA 363 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI 385 IE+LI+K +D D PP+ + Sbjct: 364 IERLIKKTIDRKTVD--GWTPPVGAV 387 >gi|224370360|ref|YP_002604524.1| putative helicase of superfamily II [Desulfobacterium autotrophicum HRM2] gi|223693077|gb|ACN16360.1| putative helicase of superfamily II [Desulfobacterium autotrophicum HRM2] Length = 402 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 166/369 (44%), Positives = 238/369 (64%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F GL +++ AV GY +PTPIQ + IP+VL+ DV AQTGTGKTA+F LP+L Sbjct: 1 MSFEIFGLRAELLRAVAAEGYKEPTPIQDQAIPVVLRGEDVLAGAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L K R PR L+L PTRELAAQV +FE G++ +L ++ GG+ + Q KL+ Sbjct: 61 EMLSKTSKRTYTPRCLVLAPTRELAAQVQASFESLGRSLHLRSTVVFGGVGIQPQIDKLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LDH R L ++ +EILV+DEADRMLDMGFI I+ + L+P RQ Sbjct: 121 KGVDILVATPGRLLDHAGRRTLDLSKVEILVLDEADRMLDMGFIHDIKKVLKLLPGKRQN 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLL 239 LLFSAT + E+++ ++ L NPK IEV+ + A+ + A Y Q +KK LL L+ Sbjct: 181 LLFSATYSTEIKRFADGLLNNPKIIEVSASNKAADGVTQ---AVYPVQKTKKRELLSTLI 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++ K ++F K L L G AIHGN Q +R + L++FK G+I+ + Sbjct: 238 RNENWTKV-LVFTRTKHGANRLTKQLITDGIKAAAIHGNKSQSTRTRALADFKNGSIKAL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV N+D+PN E+Y+HRIGRTGRAG G A +LV ++ K + Sbjct: 297 VATDIAARGLDIDMLPHVVNYDLPNVPEDYVHRIGRTGRAGATGIALSLVCSDEQKQLKE 356 Query: 360 IEKLIEKKV 368 I++L++ + Sbjct: 357 IQRLLKHNI 365 >gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas eutropha C91] gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91] Length = 455 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 164/365 (44%), Positives = 235/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L P +V AVL AGY PTPIQ + IP ++ HDV AQTGTGKTA+F+LP L Sbjct: 1 MSFENLNLHPAIVKAVLAAGYTSPTPIQQQAIPELIAGHDVMASAQTGTGKTAAFMLPAL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L + + R PR L+L PTRELA QV++ KYGK + V ++GG+P+ QNK Sbjct: 61 HRLATPAKIQGRGPRILVLTPTRELALQVSEAASKYGKFLPRVNVVSILGGMPYPLQNKL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L + DVL+ TPGR++DH RG++ + +E+LV+DEADRMLDMGFI ++ I S P R Sbjct: 121 LSQVVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIHDVERIASSTPTNR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+ ++K++ L+ PKRI++ + + + IE + + K LL L Sbjct: 181 QTLLFSATLDTAIEKIATRLLKMPKRIQIASQHAKLDHIEQR-MHYVDDLTHKNRLLDHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L T+K I+F K++ +L +L QG A+HG++ QR R + L+ ++G +++ Sbjct: 240 L-CDTTIKQAIVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQGRLKI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI D+ HV NFD+P AE+Y+HRIGRTGRAG G A + + +D H+ Sbjct: 299 LVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASGKDGIHLK 358 Query: 359 AIEKL 363 IE+ Sbjct: 359 RIERF 363 >gi|94498002|ref|ZP_01304566.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58] gi|94422585|gb|EAT07622.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58] Length = 459 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 162/371 (43%), Positives = 232/371 (62%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F DLGLS ++ A+ Y PTPIQ K IP++LQ HD+CGIAQTGTGKTA+F LP L Sbjct: 1 MEFTDLGLSEPILKALSAKKYTAPTPIQQKAIPVLLQGHDLCGIAQTGTGKTAAFALPSL 60 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + VR R L+L PTRELAAQ+A +F YG+ L+V + GG+P Q K Sbjct: 61 DYFARNPKPTPVRGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVETVFGGVPINRQIKA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+++ TPGR+LD ++ + + EI V+DEAD+M+DMGFI ++ + L+P R Sbjct: 121 LSQGVDIVVATPGRLLDLIDQRCFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKLLPTDR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q L FSATM E++ ++ FL +P ++ V S+TAE + AT+ ++K ALL + Sbjct: 181 QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQ--ATFVNQAEKQALLHIV 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+++D + +IF K + LE G AIHGN Q R L F++G ++L Sbjct: 239 LETED-IDRALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKVKL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ V HV NF++PN E Y+HRIGRT RAG G A + VA ++ ++ Sbjct: 298 LVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLK 357 Query: 359 AIEKLIEKKVD 369 AIE+ K+D Sbjct: 358 AIERATRVKLD 368 >gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM 14600] gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM 14600] Length = 538 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 162/387 (41%), Positives = 247/387 (63%), Gaps = 14/387 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F++ GL ++ A+ AGY +PTP+Q ++IP++L+ D+ G AQTGTGKTA+F LP+L Sbjct: 62 LKFSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVL 121 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T+L++ R R L+L PTRELA Q+ DNF+KYG+ +L L GG Q Sbjct: 122 HKLTLLKRPRVRA-----LVLTPTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIG 176 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RGAD+L+ TPGR+LD + + ++++EILV+DEADRMLDMGF+P + I P Sbjct: 177 ALRRGADILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSK 236 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL+FSATM E++++++ L++P +++V + A+T+E + ++ K ++ Sbjct: 237 RQTLMFSATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLI--FSSREDKREIIAS 294 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + + +++ I+F K L L+++G AIHG+ Q R L+ FK G ++ Sbjct: 295 LL-TDEAVESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVR 353 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +MVA+D+AARGLDIP + HVFN+DVP A YIHRIGRTGRAG G A TL + ++ + Sbjct: 354 VMVATDVAARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDAL 413 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEK 384 +E+L+EK + L + + PLE+ Sbjct: 414 REVEELLEKPIPELQ---TQWSLPLER 437 >gi|297539139|ref|YP_003674908.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp. 301] gi|297258486|gb|ADI30331.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301] Length = 532 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 172/376 (45%), Positives = 243/376 (64%), Gaps = 16/376 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F +LGLS ++ A+ DAGY PTPIQ K IP VL D+ AQTGTGKTA F LP+L Sbjct: 7 LNFNELGLSEPILRAINDAGYTTPTPIQSKAIPQVLSGGDLLAGAQTGTGKTAGFTLPIL 66 Query: 61 TILE--------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +L KGR PR L+L PTRELAAQ+ ++ + YGK LT ++ GG+ Sbjct: 67 HLLSQKPLSEVVKGR-----PRCLMLTPTRELAAQIEESVKVYGKFLPLTSTVIFGGVNA 121 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q +L++ D+L+ TPGR+LDH N+ + ++ IEILV+DEADRMLDMGFI I+ I + Sbjct: 122 NPQIARLKKPLDILVATPGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILA 181 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +DE++ +++ L NP +EV ++ +E +E V AQ K+ Sbjct: 182 MLPKQRQNLLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQT-VHMVAQGHKR- 239 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L+ L+Q D + +IF K L L K G AIHGN Q +R K L+ FK Sbjct: 240 ELMSHLIQQND-WQQVLIFTRTKHGANRLAEKLVKDGIQSAAIHGNKSQSARTKALAQFK 298 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 +GT++++VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV +E Sbjct: 299 DGTMRVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLVDRE 358 Query: 353 DIKHIDAIEKLIEKKV 368 ++K + IEKLI++++ Sbjct: 359 ELKLLKDIEKLIKREI 374 >gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158] gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158] Length = 511 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 169/373 (45%), Positives = 235/373 (63%), Gaps = 8/373 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 34 NFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93 Query: 62 IL----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 94 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 153 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++Q Sbjct: 214 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVVQ 272 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L + +K I+FCN K L LE+ G AIHG+ Q RM+ L FK G + Sbjct: 273 --LLRERGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEV 330 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K Sbjct: 331 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390 Query: 357 IDAIEKLIEKKVD 369 + IEKLI++ ++ Sbjct: 391 LADIEKLIKRPLE 403 >gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 435 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 168/376 (44%), Positives = 242/376 (64%), Gaps = 6/376 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ GY +P+PIQ K IP VL DV AQTGTGKTA+F LP+L Sbjct: 1 MTFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R LIL PTRELAAQVA + YG + L A++ GG+ +Q +L Sbjct: 61 QRLNASAPIKPHRIRALILTPTRELAAQVAQSVSTYGLHTPLKSAVVFGGVKINSQIAQL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+LI TPGR+LD +G++ +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RRGVDILIATPGRLLDLHGQGEVDFGELEILVLDEADRMLDMGFIHDIRRILKLLPAERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT E++++++ FLQ+P +EV + ++TA+ +E +K ALL++L+ Sbjct: 181 NLLFSATFAAEIRELTKKFLQDPIEVEVASRNATADKVEQWVYPV--DKKRKGALLRELV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L L+K G AIHGN Q +R + L +FK G ++++ Sbjct: 239 E-EKCWTQVLVFSRTKHGANRLAQQLDKAGIEATAIHGNKSQGARTRALEDFKSGRLRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+PN A++Y+HRIGRTGRAG GKA++LV ++IK ++ Sbjct: 298 VATDIAARGLDIAQLPQVVNFDLPNVAQDYVHRIGRTGRAGASGKAYSLVCADEIKQLND 357 Query: 360 IEKLIEKKV--DWLNG 373 IE+LI++ + ++++G Sbjct: 358 IEQLIQRHLPREYIDG 373 >gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia multivorans ATCC 17616] gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans ATCC 17616] Length = 509 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 171/372 (45%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 35 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 95 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 154 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 155 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++ Q Sbjct: 215 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 272 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 273 LLRDRG-LKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 331 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 391 Query: 358 DAIEKLIEKKVD 369 IEKLI++ ++ Sbjct: 392 ADIEKLIKRPLE 403 >gi|33591417|ref|NP_879061.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|33571059|emb|CAE40549.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|332380818|gb|AEE65665.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS] Length = 476 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 182/445 (40%), Positives = 261/445 (58%), Gaps = 14/445 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL+ ++ A+ D GY PTPIQ + IPLVLQ D+ AQTGTGKTA F LP+L Sbjct: 5 ISFADLGLADSLLRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPIL 64 Query: 61 TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + R PR LIL PTREL AQVA++ + YGK +L+ ++ GG+ Q Sbjct: 65 HRLMQTKPAARKPGRPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQIS 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++ D+L+ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ + +L+P Sbjct: 125 ALKKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++ L +P + V TP +TA + V Q+ K+ L+ Sbjct: 185 RQNLLFSATFSDEIRSLARGVLNDPGEVSV-TPRNTATELVTQTVHLVEQHHKRD-LVSH 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ + ++F K L L K G S AIHGN Q +R + LS FK+G++ Sbjct: 243 LIR-ESGWHQVLVFTRTKHGANRLAEKLVKDGLSAVAIHGNKSQSARTRALSGFKDGSVA 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV +IK + Sbjct: 302 VLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLL 361 Query: 358 DAIEKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 AIE+LI+K ++ ++G P + + A +N PQ G RR Sbjct: 362 KAIERLIKKPIERRAVDGWTPPAGGPTAEDRADRGQRAGGDNRAPQARDG-QRRATGAHP 420 Query: 416 QKSHIPLKESEKISKLQQDIQENDA 440 Q S + + D + NDA Sbjct: 421 QGS-----APRNAAGPRADAKRNDA 440 >gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 429 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 163/369 (44%), Positives = 238/369 (64%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ AV + GY +P+PIQ + IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFDLLGLPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 T+LEKG R + R L+L PTRELAAQV + YGKN L A++ GG+ Q + L Sbjct: 61 TLLEKGNRPKPNQVRALVLTPTRELAAQVHASVATYGKNMPLRSAVVFGGVKINPQMQIL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVL+ TPGR++D +N+ + +E+L++DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 RQGVDVLVATPGRLIDLYNQNAVSFKQLEVLILDEADRMLDMGFIHDIKRILAVLPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + +++++++ + NP I V+ ++TAE + +KK +L L+ Sbjct: 181 NLLFSATFSPDIRRLAKGLVNNPVEISVSPRNTTAENVTQTVYEV--DKTKKSIVLSTLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L SLE +G + AIHGN Q +R + L+ FKEG ++ + Sbjct: 239 KQND-WQQVLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTRALAGFKEGQVRAL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+P+ +E+Y+HRIGRTGRAG G+A +LV E+ K + Sbjct: 298 VATDIAARGIDIDQLPQVVNFDLPHVSEDYVHRIGRTGRAGNEGQALSLVCNEEFKLLKD 357 Query: 360 IEKLIEKKV 368 IEKLI+K + Sbjct: 358 IEKLIKKVI 366 >gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp. JE062] gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp. JE062] Length = 453 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 162/374 (43%), Positives = 229/374 (61%), Gaps = 5/374 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LG++ A+ GY +PTPIQ IP +L D+ G+AQTGTGKTA+F +P+L Sbjct: 3 DFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLLQ 62 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R R + R+LIL PTRELA Q+ N + Y + + ++GG+PF Q L Sbjct: 63 RLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFHAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG DVL+ TPGR+LD + + + +EI V+DEAD+MLD+GFI ++ I L+P RQ Sbjct: 123 QRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKKRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSATM E++ +SE FL NP + P++T ET+ + + K LL++LL Sbjct: 183 TLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIA--HLEKDAKFPLLKELL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D + ++F KK L L G AIHG++ Q R K L FK G ++ + Sbjct: 241 E-KDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ D+ HV NFD+PN ENY+HRIGRT RAG+ G A T ED + A Sbjct: 300 VATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRA 359 Query: 360 IEKLIEKKVDWLNG 373 I+KLI KK+ ++G Sbjct: 360 IQKLIGKKIAEMDG 373 >gi|317970136|ref|ZP_07971526.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0205] Length = 436 Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 167/367 (45%), Positives = 234/367 (63%), Gaps = 4/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL +V AVL GY +P+ IQ + IP VL DV AQTGTGKTA F LPML Sbjct: 15 FTALGLGRPIVEAVLQKGYSQPSSIQQQCIPAVLAGRDVMAAAQTGTGKTAGFTLPMLER 74 Query: 63 LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G AR R+ R+L+L PTRELAAQVADN + Y ++ +L ++ GG+ Q +L+ Sbjct: 75 LRHGPHARGRIVRSLVLTPTRELAAQVADNVKAYSRHLDLRSDVVFGGVKINPQITRLQA 134 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GAD+L+ TPGR++D +G + ++ +EILV+DEADRMLDMGFI IQ I L+P RQ L Sbjct: 135 GADMLVATPGRLMDLVQQGAISLDRVEILVLDEADRMLDMGFIRDIQKILRLLPAKRQNL 194 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++ L P +++V + TA T+EH ++K LL L+ S Sbjct: 195 LFSATFETSIRRLATGLLHEPVQLQVTPENRTAATVEHIL--HPCDMARKPDLLCHLIAS 252 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + ++F K + L +G + AIHGN Q +R + L+ FK G ++++VA Sbjct: 253 ND-WQQVLVFSRTKHGANRVADRLSAEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVA 311 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI + HV N D+PN+AE+Y+HRIGRTGRAG G A +LVA E+ + + AIE Sbjct: 312 TDIAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHSGHAVSLVAAEEHELLRAIE 371 Query: 362 KLIEKKV 368 +L KK+ Sbjct: 372 RLTGKKL 378 >gi|77360862|ref|YP_340437.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125] gi|76875773|emb|CAI86994.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Pseudoalteromonas haloplanktis TAC125] Length = 466 Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 158/365 (43%), Positives = 234/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AVL+ GY PTPIQ + IP +++R DV AQTGTGKTA F LP++ Sbjct: 1 MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G +A+ R LIL PTRELA QV++N E+Y K+ N++ ++ GG+ Q ++L Sbjct: 61 ERLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR++D N+ + +++E+LV+DEADRMLDMGFI I+ + + +P RQ Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++ +++ + +P I V ++TA+++ C A +K ALL L+ Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAV--DKPRKTALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ D + ++F K L LE+ AIHGN Q +R+K L FK G ++++ Sbjct: 239 RTND-WQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLDI ++ HV N+D+PN E+Y+HRIGRTGRAG G A + V ED + Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYG 357 Query: 360 IEKLI 364 IE+ I Sbjct: 358 IERFI 362 >gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218] Length = 536 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 163/367 (44%), Positives = 235/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ + IP VLQ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R LIL PTRELAAQV + Y ++ L+ A++ GG+ Q +L Sbjct: 61 ERLTGGPRVRANQVRALILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +E+LV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ + +P I V+ +STA+T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYP--ADVKKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K+ L L ++G AIHGN Q +R L+ FK G ++++ Sbjct: 239 KDGN-WQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++PN AE+Y+HRIGRTGRAG G+A +LV + + Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFG 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003] gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003] Length = 448 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 164/374 (43%), Positives = 235/374 (62%), Gaps = 5/374 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGL+P ++ + G KPTPIQ + IP +++ D+ G+AQTGTGKTA+F LPMLT Sbjct: 4 FENLGLAPMLLKNLAGLGLTKPTPIQAQGIPHIVRGRDILGLAQTGTGKTAAFGLPMLTR 63 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G R + R L+L PTRELA Q+ DN Y + + + ++GG Q +KL Sbjct: 64 ILAYGKRPAPKTVRALVLAPTRELATQIHDNLAAYAEGAPVRIQRVVGGASLNVQAEKLS 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR++D R L+++ + LV+DEAD+MLD+GFI ++ I L+P RQT Sbjct: 124 KGCDVLIATPGRLIDLIERRALVLSETKYLVLDEADQMLDIGFIHALRRIAKLIPAERQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++++ ++L +P R+EV TP AE I+ + +K ALL + + Sbjct: 184 LLFSATMPKLMEELAASYLSDPIRVEVATPGKAAEKIDQGV--HFTTQGEKAALLAEYI- 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+ + ++F K L LEK GFSV AIHGN Q R + LS F+ +Q++V Sbjct: 241 SRHPGELAVVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQVLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP V HV+N+D+PN ENY+HRIGRT RAGR G+A ++ + AI Sbjct: 301 ATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCGPLEMSDLRAI 360 Query: 361 EKLIEKKVDWLNGD 374 E + K+ + G+ Sbjct: 361 EAAMGAKIPVIGGE 374 >gi|39936732|ref|NP_949008.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009] gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009] gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] Length = 474 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 183/463 (39%), Positives = 262/463 (56%), Gaps = 18/463 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + GL+ + A+ + Y PTPIQ +TIPL L DV GIAQTGTGKTASF LP+L Sbjct: 11 FQEFGLADPIARALQEENYHTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHR 70 Query: 63 LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R + + R L+L PTREL+ Q+ D+F YG++ +L+ AL IGG+P Q + L Sbjct: 71 LLQNRIKPASKTCRVLVLSPTRELSGQILDSFNAYGRHVHLSAALAIGGVPMGRQVRSLM 130 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR+LD L + +E LV+DEADRMLDMGFI I+ I + +P RQT Sbjct: 131 GGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 190 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ ++E L++P R+ V SST E I + +S K A L Q+L+ Sbjct: 191 LFFSATMPKDIADLAEQMLRDPARVAVTPVSSTVERINQRVI--QLDHSAKPAALAQILK 248 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F K + L + G + AIHGN Q R ++L+ F+ G ++ +V Sbjct: 249 D-DKVNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTLV 307 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV NFD+PN E Y+HRIGRT RAG G A +L A E++ ++ I Sbjct: 308 ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGTAISLCAGEEMAYLRDI 367 Query: 361 EKLIE----KKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 EKLI+ K+ G ++ PP + A H H+ +N P + RR Sbjct: 368 EKLIKVSLPKEDRRTPGAHAAPTPPPHRGPRQAPHGHSPRNGDAPTRGKNHRRRGPAAG- 426 Query: 416 QKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNR 458 P ++S+ ++ + G +G AF+ KNR Sbjct: 427 -----PARQSDASRHEAAPRPQHGGNGEGLQGV--AFLQRKNR 462 >gi|170754379|ref|YP_001780277.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str. Okra] gi|169119591|gb|ACA43427.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str. Okra] Length = 425 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 167/371 (45%), Positives = 241/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ + GY K TPIQ K+IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGIDLVGCAQTGTGKTAAFAVPVL 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L KG+ + PR L+L PTRELA Q+ D+FE YGK NL A++ GG+ Q K Sbjct: 61 QNLSKGKKVNKNPRPIRALVLAPTRELAIQIGDSFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD FN+ + + NIE V+DEADRMLDMG I ++ I S +P Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E+ K+ ++ +++P R+EV SST +TI + + +K ALL+ Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPASSTVDTITQEVY--HVRKKQKRALLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++++ ++F K+ + L + G AIHGN Q +R + L+NFKEG I+ Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HVFN+++P+ E Y+HRIGRTGRAG G A + E+ K + Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357 Query: 358 DAIEKLIEKKV 368 AIEKLI K++ Sbjct: 358 KAIEKLINKEI 368 >gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC 33861] gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC 33861] Length = 435 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 161/381 (42%), Positives = 244/381 (64%), Gaps = 5/381 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL L ++ A+ +GY PTPIQ + IP++ QR D+ AQTGTGKTA+F +P+L Sbjct: 18 LQFKDLKLIAPILKALDASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPIL 77 Query: 61 TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + + RTL+L PTRELA Q+ +NF+ Y K + ++ GG+ + Q Sbjct: 78 QMLTYSKEKTAQKRIRTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDA 137 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+LI TPGR+LD +N+G + + +E V+DEADRMLDMGFI ++ + S++P R Sbjct: 138 LRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKR 197 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM E+QK++ + L++P ++EV S+TAE I+ + S K LL L Sbjct: 198 QTLLFSATMPAEIQKLASHILEDPSKVEVTPESTTAEKIQQSVY--FVSKSDKRHLLTHL 255 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+S++ +++ ++F K + L KQG AIHGN Q +R L+NFK+ +++ Sbjct: 256 LKSEN-IEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALNNFKDRKLRV 314 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI D+ +V NFD+PN E+Y+HRIGRTGRAG+ GKA + E+ ++ Sbjct: 315 LVATDIAARGIDIDDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAISFCDDEEYAYLL 374 Query: 359 AIEKLIEKKVDWLNGDLSSLN 379 IEK I ++ + SL+ Sbjct: 375 DIEKSIRMEIPRVEDQPYSLH 395 >gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M] gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2] gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2] gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M] Length = 487 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 171/373 (45%), Positives = 236/373 (63%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++ Q Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 LLRDRG-LKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDW 370 IEKLI++ ++ Sbjct: 370 ADIEKLIKRPLEM 382 >gi|94309401|ref|YP_582611.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans CH34] gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34] Length = 540 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 166/381 (43%), Positives = 241/381 (63%), Gaps = 13/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY PTPIQ + IP +L+ D+ AQTGTGKTA F LPML Sbjct: 1 MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60 Query: 61 TILEKGRARVR---MPR-------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 +L + AR PR L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 61 QLLSETAARANGGNAPRGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGV 120 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 Q + L RG D+++ TPGR+LDH + + ++++E+LV+DEADRMLDMGFI I+ + Sbjct: 121 GINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVLDEADRMLDMGFIHDIRKV 180 Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230 +++P RQ LLFSAT +D+++ +++ L NP IEV ++TAET+ + Sbjct: 181 LNVLPPKRQNLLFSATFSDDIRALADRLLDNPASIEVARRNTTAETVAQRVFPV--DRER 238 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K LL L++ D + ++F K L L K G S AIHGN Q +R + L+ Sbjct: 239 KRELLAHLVRQHDWHQV-LVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTE 297 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK GT++L+VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV Sbjct: 298 FKAGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVC 357 Query: 351 KEDIKHIDAIEKLIEKKVDWL 371 ++ + IE+LI+++++ + Sbjct: 358 VDEHGLLRDIERLIKRQIEQV 378 >gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1] gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1] Length = 495 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 171/373 (45%), Positives = 236/373 (63%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++ Q Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 LLRDRG-LKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVDW 370 IEKLI++ ++ Sbjct: 370 ADIEKLIKRPLEM 382 >gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus sp. RS-1] gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1] Length = 467 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 259/446 (58%), Gaps = 15/446 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F P++ + D GY PTPIQ + IP L DV GIAQTGTGKTA+FVLP+L Sbjct: 1 MSFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R RVR +I+ PTRELA Q+ E GK L L GG+ ++ Q ++L Sbjct: 61 QRLMRGPRGRVR---AMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG ++ + PGR+LDH RG L + ++++L++DEAD+M DMGF+P ++ I L P RQ Sbjct: 118 RRGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM D ++ ++ L+ P+ I++ S+ T+ H K ALL +LL Sbjct: 178 TMLFSATMPDAIRALAREALREPQTIQIGR-SAPVSTVTHAIYPVAEHL--KTALLIELL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + DT + +IF K +L +L + G+ A+ GN+ Q R L F+ G Q++ Sbjct: 235 RHTDT-GSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+P AE Y HRIGRTGRA R G AFTLV + D + A Sbjct: 294 VATDIAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRA 353 Query: 360 IEKLIEK--KVDWLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 IE+LI + K + + G D + P + A+ +HA +++ +P+ + +++ + Sbjct: 354 IERLIGEPLKRETVPGFDYHAAAPAHD----ARSDHAPRHHAMPRHYEPHSQDERDNRAP 409 Query: 417 KSHIPLKESEKISKLQQDIQENDADS 442 + H + + ++D+QE +D+ Sbjct: 410 RRHDAQERRSDTAPRRRDVQEWRSDA 435 >gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] Length = 487 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 171/372 (45%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ L A++ GG+ Q Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K+ A++ Q Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-Q 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 LLRDRG-LKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVD 369 IEKLI++ ++ Sbjct: 370 ADIEKLIKRPLE 381 >gi|114777228|ref|ZP_01452239.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Mariprofundus ferrooxydans PV-1] gi|114552373|gb|EAU54856.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Mariprofundus ferrooxydans PV-1] Length = 426 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 164/371 (44%), Positives = 235/371 (63%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV D GY PTP+Q +IP++L HDV AQTGTGKTA F LPML Sbjct: 1 MSFEKLGLSADLLRAVADQGYETPTPVQANSIPVILAGHDVLAGAQTGTGKTAGFTLPML 60 Query: 61 TILEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 ++ K R+R R L+L PTRELAAQV ++ YGK L ++ GG+ Q + Sbjct: 61 QLMHKTHPERSRNHPIRALVLTPTRELAAQVGESIATYGKYLPLRSTVVFGGVGINPQIQ 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+RG D+L+ TPGR+LD +GK + ++E V+DEADRMLDMGFI I+ + ++P Sbjct: 121 KLQRGVDILVATPGRLLDLIGQGKANLGHVEFFVLDEADRMLDMGFIHDIRKVLKMLPKK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT ++E++K++ FL P +EV + + + V +KK LL Sbjct: 181 RQNLLFSATFSEEIKKLANGFLHAPVYVEVARNETAHQVTQ---VVHPVSKAKKRDLLSH 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ D + ++F K L LE G + AIHGN Q +R K L+ FK G+++ Sbjct: 238 LIRQGD-WQQVLVFTKTKHGANKLTTQLESDGITAVAIHGNKSQTARTKALAGFKAGSVR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +MVA+D+AARGLDI + HV N+++P+ AE+Y+HRIGRTGRAG G++ +LV+ ++ K + Sbjct: 297 VMVATDIAARGLDIDSLPHVVNYELPHVAEDYVHRIGRTGRAGNSGESLSLVSGDEKKLL 356 Query: 358 DAIEKLIEKKV 368 IE+LI+K + Sbjct: 357 VGIERLIKKPI 367 >gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC 19624] gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC 19624] Length = 506 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 170/370 (45%), Positives = 239/370 (64%), Gaps = 8/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +ADL L+ + AV D GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 20 YADLTLAEPLKRAVADMGYETMTPIQAQAIPVVLAGQDVMGAAQTGTGKTAAFSLPLLQR 79 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + R P R L+L PTRELA QVA + Y K +L A++ GG+ + Q Sbjct: 80 LLKHENASTSPARHPVRALVLLPTRELADQVAQQVKMYAKYTHLRSAVVFGGMDMKPQTL 139 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 140 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKQ 199 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQNP IEV ++TA T+E F + + K+ A L+Q Sbjct: 200 RTTLLFSATFSPEIKRLASSYLQNPITIEVARSNATATTVEQHFYSV-GEDDKRHA-LRQ 257 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ ++ +K +F N K L +LE+ G A+HG+ Q R+K L FK+G + Sbjct: 258 VLRDKN-LKQAFVFVNSKLGCARLARALERDGLKTAALHGDKSQDERLKALDAFKKGEVD 316 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFN D+P AE+Y+HRIGRTGRAG G A + V+ D+K + Sbjct: 317 LLVCTDVAARGLDIKDVPAVFNIDIPFNAEDYVHRIGRTGRAGALGVAVSFVSPRDVKSV 376 Query: 358 DAIEKLIEKK 367 IEKLI+ K Sbjct: 377 AEIEKLIKTK 386 >gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105] gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105] Length = 539 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 174/389 (44%), Positives = 240/389 (61%), Gaps = 9/389 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD L P + A+ GY +PTPIQ K IP+V+ DV G AQTGTGKTA F LP+L Sbjct: 22 FADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILNR 81 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + R P R LIL PTRELA QVA N Y K L ++ GG+ Q + Sbjct: 82 LMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKFTPLRSTVVYGGVDINPQIQ 141 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG +++I TPGR+LDH + + + +++LV+DEADRMLDMGF+P +Q I +L+P T Sbjct: 142 TLRRGVELVIATPGRLLDHVQQKSINLGQVQVLVLDEADRMLDMGFLPDLQRIINLLPKT 201 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT + E+QK++++F+ +P IEV ++T+E I+ A ++ K+ A+ Sbjct: 202 RQNLLFSATFSPEIQKLAKSFMVSPTLIEVARRNATSENIKQVIFALDSEEDKRMAVC-H 260 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+QS+ + I+F N K L LEK+G S AIHG+ Q R K L FK G + Sbjct: 261 LIQSK-ALSQVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIERTKSLEAFKAGEVT 319 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI D+ V N+D+P E+Y+HRIGRTGRAG G A++ V K D + + Sbjct: 320 VLVATDVAARGLDIADLPCVINYDLPTTPEDYVHRIGRTGRAGAKGTAYSFVVKRDERAL 379 Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLEK 384 IEKLI K + L G + P E+ Sbjct: 380 KDIEKLIGKAFVREELEGFVPGARAPREE 408 >gi|73540602|ref|YP_295122.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] Length = 537 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 171/389 (43%), Positives = 238/389 (61%), Gaps = 10/389 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F GL +++ A+ + GY KPTPIQ + IP+VL DV G AQTGTGKTA F LP Sbjct: 56 FESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQR 115 Query: 59 MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + R P R L+L PTRELA QV DN +Y K+ +L ++ GG+ Q Sbjct: 116 LLPMASASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTD 175 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG ++L+ TPGR+LDH + + ++ +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 176 ALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQ 235 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E+++++ ++L+ P IEV +ST E + V K+ A++ Sbjct: 236 RQTLLFSATFSPEIKRLAASYLKQPVTIEVARSNSTNENVRQ-MVYQVEDGQKQAAVVHL 294 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q K I+F N K L LE++G + AIHG+ Q RM+ L FK GT Sbjct: 295 LRQRAEQGLSKQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKNGT 354 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I +VA+D+AARGLDI D+ V NFD+P AE+Y+HRIGRTGRAG G A ++ D + Sbjct: 355 IDALVATDVAARGLDIADMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGDER 414 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 + IEKLI++ V G L +P EK Sbjct: 415 LLTDIEKLIKRSVP--RGTLEGFDPTGEK 441 >gi|260776311|ref|ZP_05885206.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC BAA-450] gi|260607534|gb|EEX33799.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC BAA-450] Length = 483 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 166/367 (45%), Positives = 234/367 (63%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ D GY KP+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTALGLSAPLLKAIDDQGYDKPSPIQEQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ G R + R L+L PTRELAAQV +N KY + LT ++ GG+ Q KL Sbjct: 61 ERLDNGTRVKGNHVRALVLTPTRELAAQVQENVFKYSRYQRLTSNVVFGGVKINPQMTKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVL+ TPGR+LD + + + + +E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGTDVLVATPGRLLDLYQQNAINFSQLEVLVLDEADRMLDMGFIRDIRKILALLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + +P + VN +STA TIE A KK +L +L+ Sbjct: 181 NLLFSATFSAEIRELAKGLVNDPVEVSVNPENSTAVTIEQSIYP--ADKRKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L H L QG + IHGN Q +R K L++FK G ++++ Sbjct: 239 KDGD-WRQVLVFSRTKHGANRLSHYLNDQGITAAPIHGNKSQGARTKALADFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++P+ AE+Y+HRIGRTGRAG GKA +LV + + Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPHVAEDYVHRIGRTGRAGEVGKAISLVEAAEASELFG 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria MC40-6] gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MC40-6] Length = 511 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 170/372 (45%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 35 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ +L A++ GG+ Q Sbjct: 95 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMA 154 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 155 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 214 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K A++ Q Sbjct: 215 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKHGAVV-Q 272 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K ++FCN K L +LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 273 LLRDRG-LKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 331 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 332 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 391 Query: 358 DAIEKLIEKKVD 369 IEKLI++ ++ Sbjct: 392 ADIEKLIKRPLE 403 >gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972] gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972] Length = 540 Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 163/367 (44%), Positives = 235/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ + IP VLQ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R LIL PTRELAAQV + Y ++ L+ A++ GG+ Q +L Sbjct: 61 ERLTGGPRVRANQVRALILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR++D +N+ + + +E+LV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ + +P I V+ +STA+T+E C A KK +L +L+ Sbjct: 181 NLLFSATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYP--ADVKKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K+ L L ++G AIHGN Q +R L+ FK G ++++ Sbjct: 239 KDGN-WQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NF++PN AE+Y+HRIGRTGRAG G+A +LV + + Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFG 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] Length = 571 Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 171/372 (45%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 87 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 146 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ +L A++ GG+ Q Sbjct: 147 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMA 206 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 207 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 266 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K A++ Q Sbjct: 267 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKHSAVV-Q 324 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L +LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 325 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 383 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 384 ALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 443 Query: 358 DAIEKLIEKKVD 369 IEKLI++ ++ Sbjct: 444 ADIEKLIKRPLE 455 >gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] Length = 426 Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 170/402 (42%), Positives = 253/402 (62%), Gaps = 14/402 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F DLGLS +++ AV D GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 4 FNDLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQR 63 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T + GR R R L+L PTRELAAQV + YGK L A++ GG+ Q Sbjct: 64 LSDTPVSSGR---RPVRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQIS 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G D+L+ TPGR+LDH ++ + ++ +EIL++DEADRMLDMGFI I+ + +L+P Sbjct: 121 MLRKGVDILVATPGRLLDHVSQKTVDLSKVEILILDEADRMLDMGFIRDIRKVLALLPKK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +D++++++++ L P IEV ++ +E +E + S+K LL Sbjct: 181 RQNLLFSATFSDDIKRLADSLLNTPTLIEVARRNTASEQVEQSV--HLIEKSRKRELLSH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ SQ+ + ++F K+ L LEK G AIHGN Q +R K L++FK G + Sbjct: 239 MIGSQN-WQQVLVFTRTKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRAR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + +V N+++P+ E+Y+HRIGRTGRAGR GKA +LV E+ K + Sbjct: 298 VLVATDIAARGLDIDQLPNVVNYELPDVPEDYVHRIGRTGRAGRDGKAVSLVCSEEKKQL 357 Query: 358 DAIEKLIEKKV--DWLNG-DLSSLNPPLEKIDIAQHNHARKN 396 IE+L+++ + + + G ++S+ N P + A++N Sbjct: 358 RDIERLLKRPIAKEVIAGYEVSTTNKPTARPASQPRKSAQRN 399 >gi|332521345|ref|ZP_08397801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043073|gb|EGI79271.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 444 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 183/416 (43%), Positives = 255/416 (61%), Gaps = 10/416 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ GY P+PIQ K IP VL +DV AQTGTGKTA F LP+L Sbjct: 1 MSFKQLGLSEPLLKAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 IL E + + R R L+L PTRELAAQV N ++Y + NL ++ GG+ + Q + Sbjct: 61 HILSENPKEKFRPIRALVLTPTRELAAQVYANVKEYSEFLNLRSVVIFGGVNQKPQVANI 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVL+ TPGR++D N+G L + +EI V+DEADRMLDMGF+ I+ + L+P RQ Sbjct: 121 RKGVDVLVATPGRLIDLNNQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQL 238 L+FSAT + +++K++ N L+NP ++E TP +TA +E Y K L+ +L Sbjct: 181 NLMFSATFSKDIKKLAFNILKNPVQVEA-TPENTA--VEAISQKVYRVAKGLKTGLVIKL 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S K ++F K L + G + AIHGN Q +R K L FK+GTI++ Sbjct: 238 I-SDGNWKQVLVFTRTKHGANKLTKKMISSGITAAAIHGNKSQGARTKALKGFKDGTIRV 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDIP + HV NF++PN +E+Y+HRIGRTGRAG G+A +LV+ ++ +++ Sbjct: 297 MVATDIAARGLDIPLLPHVINFEIPNISEDYVHRIGRTGRAGAKGEAISLVSADETQYLR 356 Query: 359 AIEKLI-EK-KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 IEKLI EK KV+ L G N I Q+ R NP KS G + K+N Sbjct: 357 DIEKLIGEKLKVEILEGFEPDPNASTAPIKPGQNRQKR--NPNKAKSQGSNSGKRN 410 >gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria AMMD] gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD] Length = 497 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 170/372 (45%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ +L A++ GG+ Q Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMA 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 133 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K A++ Q Sbjct: 193 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKHGAVV-Q 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K ++FCN K L +LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 251 LLRDRG-LKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 369 Query: 358 DAIEKLIEKKVD 369 IEKLI++ ++ Sbjct: 370 ADIEKLIKRPLE 381 >gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] Length = 571 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 171/372 (45%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTASF LP++ Sbjct: 87 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 146 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N Y K+ +L A++ GG+ Q Sbjct: 147 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMA 206 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++LI TPGR+LDH + + ++ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 207 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 266 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ +L+NP+ IEV +ST + V A+ K A++ Q Sbjct: 267 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKHSAVV-Q 324 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + +K I+FCN K L +LE+ G AIHG+ Q RM+ L FK G I+ Sbjct: 325 LLRDRG-LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIE 383 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + + K + Sbjct: 384 ALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL 443 Query: 358 DAIEKLIEKKVD 369 IEKLI++ ++ Sbjct: 444 ADIEKLIKRPLE 455 >gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 449 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 169/374 (45%), Positives = 237/374 (63%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFTDLGLADGIVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEK-----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L A + P R L+L PTRELAAQV ++ Y K NL A++ GG+ Sbjct: 61 HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINP 120 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q K L+ G D+L+ TPGR+LDH +G + ++ +EILV+DEADRMLDMGFI I+ + +++ Sbjct: 121 QIKLLKHGVDILVATPGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVL 180 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT ++E++ +++ L +P IEV +ST E IE KK + Sbjct: 181 PKNRQNLLFSATFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKI--HPVDRDKKHPM 238 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+++ + ++F K L LEK G S AIHGN Q +R + LS FK+G Sbjct: 239 LAHLIKTNN-WSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDG 297 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++Q++VA+D+AARG+DI + HV N+D+PN E+Y+HRIGRTGRAG G+A +LV +++ Sbjct: 298 SLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEL 357 Query: 355 KHIDAIEKLIEKKV 368 + IEKLI++K+ Sbjct: 358 DMLKDIEKLIKRKL 371 >gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans 2-40] gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40] Length = 516 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 234/370 (63%), Gaps = 8/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+LGL P + AVL+ GY PTPIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 18 MKFAELGLCPAIQKAVLEQGYETPTPIQAQAIPPVLEGRDVMAAAQTGTGKTAGFTLPIL 77 Query: 61 TILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 IL +G + + R L+L PTRELAAQV +N YGK + ++ GG+ Q Sbjct: 78 EILAEGIENGRKVKPNQARALVLTPTRELAAQVGENVALYGKYLPIKSTIVFGGVKINPQ 137 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL G D+L+ TPGR++D +N+ + + +E+LV+DEADRMLDMGFI I+ I +++P Sbjct: 138 MMKLRGGVDILVATPGRLMDLYNQRAVKFDQLEMLVLDEADRMLDMGFIHDIRKIMAILP 197 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ L+FSAT + ++++++++ + NP I VN P+STA ++ +K ALL Sbjct: 198 KKRQNLMFSATFSQDIRELAKSIVNNPVEITVNPPNSTATRVKQWICPV--DKKEKPALL 255 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+++ + + ++F K L LE G AIHGN Q +R K L+ FK GT Sbjct: 256 THLIKT-NKWQQVLVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTKALAEFKNGT 314 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G A +LV+ ++ + Sbjct: 315 VKILVATDIAARGLDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGNAVSLVSADEFQ 374 Query: 356 HIDAIEKLIE 365 + IE+L + Sbjct: 375 MLKEIERLTK 384 >gi|149189294|ref|ZP_01867580.1| DNA and RNA helicase [Vibrio shilonii AK1] gi|148836853|gb|EDL53804.1| DNA and RNA helicase [Vibrio shilonii AK1] Length = 477 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 240/391 (61%), Gaps = 10/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ D GY K +PIQ + IP +++ DV AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLSTPILRAIQDLGYEKASPIQEQAIPAIIEGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R + R LIL PTRELAAQV ++ KY N LT + GG+ Q KL Sbjct: 61 ERLNSGQRVKGNHIRALILTPTRELAAQVHESVFKYSTNLPLTSQCVFGGVKINPQMLKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DV++ TPGR+LD + + + + +E+LV+DEADRMLDMGF I+ I L+P RQ Sbjct: 121 RKGCDVMVATPGRLLDLYQQNAIKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT ++E++ +++ + NP + V P+ST + +E T +K A+L +L+ Sbjct: 181 NLLFSATFSNEIRDLAKGLVNNPIEVSVTPPNSTTKLVEQSLYVT--DKKQKPAMLAKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + K ++FC K L LE + + AIHGN Q +R K L +FK G I+++ Sbjct: 239 -DDGSWKQVLVFCKTKHGANRLARFLEGKKITALAIHGNKSQGARTKALEHFKTGQIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP + V NFD+P+ +E+Y+HRIGRTGRAG GKA++LV ++ K + Sbjct: 298 VATDIAARGLDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGETGKAYSLVCADEAKELFG 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKID 386 IE+LI K +D +L P P K+D Sbjct: 358 IERLIGKLIDRF--ELEGFKPVNAVPESKLD 386 >gi|91216282|ref|ZP_01253249.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755] gi|91185420|gb|EAS71796.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755] Length = 423 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 182/424 (42%), Positives = 252/424 (59%), Gaps = 6/424 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV GY PTPIQ K+IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MLFKSLGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + R R R LIL PTRELAAQV + + YGK +L ++ GG+ ++Q L Sbjct: 61 QLLSQTPPLRNRPVRALILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D N+G L + +EILV+DEADRMLDMGF+ I+ I L+P RQ Sbjct: 121 RNGVDVLVATPGRLIDLNNQGLLSLAKVEILVLDEADRMLDMGFLRDIKKIMKLIPKQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + E++ ++ FL+NP +E ++T E IE + KK LL +L+ Sbjct: 181 TLLFSATFSREIRSLASEFLKNPVSVESTPENTTVEAIEQQVYRVAKE--KKTDLLIKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ + ++F K L LE AIHGN Q +R K L+ FK G+++++ Sbjct: 239 -SEGNWEQVLVFSRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDIP + +V NF++PN +E+Y+HRIGRTGRAG G A +LV+ ++ + Sbjct: 298 VATDIASRGLDIPLLPYVVNFELPNVSEDYVHRIGRTGRAGASGLAVSLVSADETVFLKD 357 Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 IEKLI K+ D + G N + + Q ++N +S R K S Q Sbjct: 358 IEKLIGDKIPMDIIEGFEPDPNASTKPFNPQQRGRKPQSNSRSGQSNRPQREKSGSSRQS 417 Query: 418 SHIP 421 S+ P Sbjct: 418 SNKP 421 >gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC 15579] gi|187774670|gb|EDU38472.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC 15579] Length = 425 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 166/371 (44%), Positives = 242/371 (65%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ + GY K TPIQ K+IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + + PRT L+L PTRELA Q+ ++FE YGK NL A++ GG+ Q K Sbjct: 61 QNLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD FN+ + + NIE V+DEADRMLDMG I ++ I S +P Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E+ K+ ++ +++P R+EV SST +TI + + +K +LL+ Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRSLLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++++ ++F K+ + L + G AIHGN Q +R + L+NFKEG I+ Sbjct: 239 LLKDE-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HVFN+++P+ E Y+HRIGRTGRAG G A + E+IK + Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEEIKSL 357 Query: 358 DAIEKLIEKKV 368 AIEKLI K++ Sbjct: 358 KAIEKLIHKEI 368 >gi|94311518|ref|YP_584728.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans CH34] gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34] Length = 556 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 171/391 (43%), Positives = 241/391 (61%), Gaps = 13/391 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F GL P+++ A+ + GY KPTPIQ + IP+VL DV G AQTGTGKTA F LP Sbjct: 75 FESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQR 134 Query: 59 MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + R P R L+L PTRELA QV DN +Y K+ +L ++ GG+ Q Sbjct: 135 LLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTD 194 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG ++L+ TPGR+LDH + + ++ +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 195 ALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQ 254 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ ++L+ P IEV +ST E + V Q K A + Sbjct: 255 RQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQ--VVYQVQDGHKQAAVVH 312 Query: 238 LLQ---SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LL+ ++ + I+F N K L LE++G + AIHG+ Q RM+ L FK G Sbjct: 313 LLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKNG 372 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKED 353 TI +VA+D+AARGLDIP + V NFD+P AE+Y+HRIGRTGRAG G A ++ V D Sbjct: 373 TIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGND 432 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 + + IEKLI++ + G L +P E+ Sbjct: 433 DRLLADIEKLIKRSIP--RGSLDGFDPTGER 461 >gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 442 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 167/396 (42%), Positives = 248/396 (62%), Gaps = 5/396 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL +++ AV ++GY +P+PIQ K IP+VLQ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFNELGLRAELLRAVSESGYSQPSPIQSKAIPVVLQGGDLLAGAQTGTGKTAGFALPLL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L EK + R R L+L PTRELAAQV +F YGK+ L ++ GG+ Q L Sbjct: 61 QRLSEKPAQKSRPIRALVLTPTRELAAQVEASFRLYGKHLPLRTTVVFGGVSIRPQITTL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LDH ++ + ++ +E+LV+DEADRMLDMGF+ I+ I +L+P RQ Sbjct: 121 RQGVDILVATPGRLLDHVSQKTIDLSKVEMLVLDEADRMLDMGFLRDIRKILALLPIQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ L++P IEV ++ AE ++ K ALL L+ Sbjct: 181 NLLFSATFSDEIKRLADGLLKSPTLIEVARRNTAAEQVDQAIY--RIDKGLKRALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q+ + ++F K L L K G S AIHGN Q +R + L++FK+G ++++ Sbjct: 239 SGQN-WQQVLVFTRTKHGANRLAGQLAKDGISSTAIHGNKSQGARTRALADFKQGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRAG G A + V E+ K + Sbjct: 298 VATDIAARGLDIEQLPHVVNYELPNVPEDYVHRIGRTGRAGCSGNAISFVCAEEHKQLHD 357 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE L+++++ L L ++D +H R+ Sbjct: 358 IESLLKRRIP-LQEQEPGLTLTRSEVDTVRHRTPRR 392 >gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 429 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 165/374 (44%), Positives = 241/374 (64%), Gaps = 5/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGLS +++ AV GY + TPIQ + IPLVL+ DV AQTGTGKTA F LP+L Sbjct: 1 MLFKDLGLSAELLRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVL 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ A + R PR L+L PTRELAAQV ++ YG+ A++ GG+ Q +K Sbjct: 61 QRLQSSHAEGQKRHPRVLVLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DV++ TPGR+LDH + + ++ +E+LV+DEADRMLDMGFI I+ + + +P R Sbjct: 121 LIKGVDVVVATPGRLLDHLQQRSIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT + E++ ++ FL P I+V TP +TA + V + K+ L Q++ Sbjct: 181 QTLLFSATFSKEIKSLAAEFLHQPTEIQV-TPQNTAAELVSQIVYPVDKKRKRELLSQKI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + ++F K L L K G + AIHGN Q +R K L+NFK+G++++ Sbjct: 240 --GEENWQQVLVFTRTKHGANKLSEQLGKDGITSAAIHGNKSQGARTKALANFKQGSVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NF++PN AE+Y+HRIGRT RAG+ G A +LV +++K + Sbjct: 298 LVATDIAARGIDIDKLPHVVNFELPNVAEDYVHRIGRTARAGQEGHAVSLVCVDELKLLS 357 Query: 359 AIEKLIEKKVDWLN 372 IEKL+ ++ +N Sbjct: 358 DIEKLLGTSIEKVN 371 >gi|262193653|ref|YP_003264862.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365] gi|262077000|gb|ACY12969.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM 14365] Length = 497 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 169/375 (45%), Positives = 229/375 (61%), Gaps = 9/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV DAGY TPIQ + IP L D+ G AQTGTGKTA+F LP+L Sbjct: 1 MPFQQLGLSEPLVRAVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPIL 60 Query: 61 TILEK---GRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + G AR R R LI+ PTRELAAQ+ D+ YG++ L ++ GG+ Sbjct: 61 QRLAETGDGNARPRRGARPIRALIVTPTRELAAQIGDSMTTYGRHLPLRNTVIFGGVNQN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L RG D+L+ TPGR+LD ++G + ++ +E+ V+DEADRMLDMGFI I+ I + Sbjct: 121 RQVDALRRGIDILVATPGRLLDLMDQGYIHLDRLEVFVLDEADRMLDMGFIHDIRKIVAA 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 VP RQTLLFSATM E+Q ++ LQ P ++ V S+ AET+E C K + Sbjct: 181 VPSERQTLLFSATMPGEIQSLAAGLLQEPVKVSVTPESTAAETVEQCVY--LVSREDKQS 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL +LL+ M ++F K + L K AIHGN Q +R++ L +FK Sbjct: 239 LLTELLRDDPEMAKVLVFSRTKHGADRVAKRLSKSNIPAQAIHGNKSQNARLRALESFKR 298 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++VASD+AARGLDI + HV NFD+PN E Y+HRIGRTGRAG G A + A E+ Sbjct: 299 GDTRVLVASDIAARGLDIDALSHVVNFDLPNEPETYVHRIGRTGRAGCEGVAMSFCADEE 358 Query: 354 IKHIDAIEKLIEKKV 368 ++ +IE+LI++ + Sbjct: 359 RGYLRSIERLIDQLI 373 >gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1] gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1] gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1] gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1] Length = 496 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 167/372 (44%), Positives = 233/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV GY PTPIQ + IP L DV G AQTGTGKTA+F LP+L Sbjct: 1 MTFDELKLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPIL 60 Query: 61 TILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L GR A+ R R L+L PTRELA+Q+AD+F+ YG+ L+ A++ GG+ AQ Sbjct: 61 HRLSAGRSPPPAQGRPIRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQE 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG DVLI TPGR+LD +G + +E+ V+DEADRMLDMGFI ++ I S +P Sbjct: 121 QTLRRGVDVLIATPGRLLDLMGQGLVSYKALEVFVLDEADRMLDMGFIHDVKRIISALPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSATM E+Q +++ L++P R+EV S+TAET+E + + +K LL Sbjct: 181 KRQTLFFSATMPPEIQSLAQGILKSPVRVEVTPESTTAETVEQKMF--FVEREQKRHLLV 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +++ ++F K + L S AIHGN Q +R + L FK+G+ Sbjct: 239 HLL-GDASIRRALVFTRTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSC 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G A + E+ + Sbjct: 298 RVLVATDIAARGIDIEGITHVINFDLPNIPESYVHRIGRTGRAGAVGTALSFCDGEERAY 357 Query: 357 IDAIEKLIEKKV 368 + IE+ I ++V Sbjct: 358 LRDIERTIRRQV 369 >gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 513 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 165/370 (44%), Positives = 235/370 (63%), Gaps = 8/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+P+++ A+ D GYV PTPIQ + IP+VLQ DV G AQTGTGKTA F LP++ + Sbjct: 38 FEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQL 97 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVADN + Y ++ L ++ GG+ Q Sbjct: 98 LMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTA 157 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G +++I TPGR+LDH + L ++ +ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 158 ALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 217 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ L+FSAT + E++K++ FL++P IEV ++TAE + + + K + Sbjct: 218 RQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQ--IVYKVEEGDKGDAVSY 275 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ + +K I+F N K L LE +G AIHG+ Q RM L FK GTI+ Sbjct: 276 IIRERG-LKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMAALEAFKNGTIE 334 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+D+P AE+Y+HRIGRTGRAG G A +L + +D + + Sbjct: 335 VLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLYSDKDARLL 394 Query: 358 DAIEKLIEKK 367 IEK+I+ K Sbjct: 395 VDIEKMIKHK 404 >gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp. JS42] gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42] Length = 484 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 168/372 (45%), Positives = 232/372 (62%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 ++ L L+ + AV + GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 YSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + R P R L+L PTRELA QVA Y K L ++ GG+ + Q Sbjct: 65 LLKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTI 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQ+P IEV P+ TA T+E F A ++ ++ Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRA--IRH 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L + +K IF N K L SLE+ G A+HG+ Q R+K L FK G + Sbjct: 243 VLNERG-LKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGEVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFN+DVP AE+Y+HRIGRTGRAG G A TL A D + + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAASSDTRLV 361 Query: 358 DAIEKLIEKKVD 369 IEKLI+KK++ Sbjct: 362 ADIEKLIKKKIE 373 >gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS] gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS] Length = 470 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 182/458 (39%), Positives = 274/458 (59%), Gaps = 18/458 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F D GL+ +++ A+ D GY PTPIQ + IP++L+ DV G AQTGTGKTA + LP+L + Sbjct: 17 FGDFGLASEILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQS 76 Query: 62 ILEKGRARV---RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L A + R P R LIL PTRELA QV ++ KY K +L A++ GG+ Q Sbjct: 77 LLYYANASMSPARHPVRALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQTG 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GA++LI TPGR+LDH + + + ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 137 ILRAGAEILIATPGRLLDHIQQKNVNLGQTGILVLDEADRMLDMGFLPDLQRIVNLLPKK 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT + E++K++ +FL P +EV ++TA+ + + + A + L Sbjct: 197 RQNLLFSATFSSEIRKLANSFLDRPVSVEVARQNATADNVTQTVYRIDEADKNDAVEYLL 256 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L + + + IF N K L LEK+G AIHG+ Q RM L FKEG I Sbjct: 257 RLHKREQVL----IFSNTKAGASRLARQLEKKGLKAAAIHGDKTQAERMAALDAFKEGNI 312 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL I ++ V NFD+P AE+Y+HRIGRTGRAG G+A +L + +D K Sbjct: 313 TVLVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGASGEAISLCSAKDEKL 372 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKKNY 413 ++ IEKLI++K+ S +P + K +++ A +++ P KS G +++ ++ Sbjct: 373 LNEIEKLIKRKLPV----HSIPDPEIRKEKVSKGEAAGADKRSERSPYKSIGLEKKGRDP 428 Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSL-GFRGNMP 450 + ++P SE + ++ +Q++ A L G +P Sbjct: 429 WFDRPYVPEASSENGKETEKPVQKSLARPLAALLGGIP 466 >gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans BC] gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus denitrificans K601] gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans BC] gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans K601] Length = 480 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 171/371 (46%), Positives = 231/371 (62%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 ++ L L+ + AV D GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 YSTLALAEPLKRAVADMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + R P R L+L PTRELA QVA Y K L ++ GG+ + Q Sbjct: 65 LLKHENSSASPARHPVRALVLLPTRELADQVAQQIAMYAKYTKLRSTVVFGGMDMKPQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQ+P IEV P+ TA T+E F + Q K ++ Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFFSV--QDDDKRRAIRH 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L ++ +K IF N K L SLE+ G A+HG+ Q R+K L FK G + Sbjct: 243 VL-TERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGDVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFN DVP AE+Y+HRIGRTGRAG G A TLV D + + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNHDVPFNAEDYVHRIGRTGRAGASGLAVTLVGSGDARLV 361 Query: 358 DAIEKLIEKKV 368 IEKLI+KKV Sbjct: 362 ADIEKLIKKKV 372 >gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus TPSY] gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY] Length = 484 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 168/372 (45%), Positives = 232/372 (62%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 ++ L L+ + AV + GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 YSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + R P R L+L PTRELA QVA Y K L ++ GG+ + Q Sbjct: 65 LLKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTI 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQ+P IEV P+ TA T+E F A ++ ++ Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRA--IRH 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L + +K IF N K L SLE+ G A+HG+ Q R+K L FK G + Sbjct: 243 VLNERG-LKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALDAFKSGEVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+V +D+AARGLDI DV VFN+DVP AE+Y+HRIGRTGRAG G A TL A D + + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAASSDTRLV 361 Query: 358 DAIEKLIEKKVD 369 IEKLI+KK++ Sbjct: 362 ADIEKLIKKKIE 373 >gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479] gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479] Length = 432 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 176/420 (41%), Positives = 260/420 (61%), Gaps = 16/420 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS ++ A+ + GY P+PIQ K IP VL DV G AQTGTGKTA+F LP++ Sbjct: 1 MTFKDLQLSAPLLKALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPII 60 Query: 61 TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + R+ R+LIL PTRELA Q+A+NF++YG + + A++ GG+ Q K Sbjct: 61 QNLMRPSDKKHSKRVIRSLILTPTRELALQIAENFKEYGSHTPVRCAVIFGGVSAVPQIK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L+RG D+L+ TPGR+ D ++G++ ++++E+ V+DEADRMLDMGFI ++ I SL+P Sbjct: 121 ELQRGIDILVATPGRLNDLIHQGEISLSHVEMFVLDEADRMLDMGFIHDVKKIISLLPVK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSATM E+Q ++E L NP +EV SS + IE Y K ALL Sbjct: 181 KQTLLFSATMPPEIQALTEKLLHNPAVVEVTPVSSIVDLIEDSLY--YVDKENKRALLVH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ ++ + + ++F K + L K + AIHG+ Q +R K LS FK GT++ Sbjct: 239 LLK-REAITSTLVFTRTKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQFKAGTVR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++ A+D+AARG+DI ++ V NFD+PN E Y+HRIGRTGRAG G+A + E+ ++ Sbjct: 298 VLAATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYV 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 + IEKLI KK+ + +P P+ + Q ++ P P K+TG + K+ S+ Sbjct: 358 EDIEKLIGKKIPVVKD-----HPFPMTVFTVPQ----KETKPRPVKNTGRNDAKRPQKSK 408 >gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella capsiferriformans ES-2] Length = 461 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 167/396 (42%), Positives = 251/396 (63%), Gaps = 10/396 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FADL L+P+++ A++++GY KPTPIQ + IPLVL+ D+ AQTGTGKTA+F LP+L Sbjct: 3 NFADLNLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPVLQ 62 Query: 62 ILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + P R LIL PTRELA QV + + Y K +L ++ GG+ + Q Sbjct: 63 KLMPFASSSPSPARHAVRALILVPTRELAIQVEASVKAYAKYSHLRSLVVFGGVDIKTQT 122 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G ++L+ TPGR+LDH + + +N +++LV+DEADRMLDMGF+P ++ I +L+P Sbjct: 123 PHLRAGIEILVATPGRLLDHIEQKSVQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPR 182 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ L+FSAT + E++K+S FL NPK IEV ++T+E + + +K ALL Sbjct: 183 QRQNLMFSATFSAEIKKLSAEFLVNPKLIEVARSNATSENVTQKVY--LVGHEEKHALLA 240 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+ ++ ++F K + L+++GF+ AIHG+ Q RM+ L FK G I Sbjct: 241 HLLRGTGAVQT-LVFTKTKLTASRIARQLQREGFASDAIHGDKSQLERMQALDAFKSGKI 299 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++A+D+AARGLDI + V N+++P+ AE+Y+HRIGRTGRAG G A +LVA E+ K+ Sbjct: 300 TVLIATDVAARGLDIDQLPVVINYEIPSAAEDYVHRIGRTGRAGAFGVAISLVAPEEEKY 359 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 + IEKLI+ + + +L + PL + A+ H Sbjct: 360 LLEIEKLIKCTIQRV--ELPASEKPLARAPRAESAH 393 >gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative symbiont of Hydra magnipapillata] Length = 520 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 173/375 (46%), Positives = 238/375 (63%), Gaps = 9/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA L L+ + AV + GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 22 MAFAQLQLADPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLL 81 Query: 61 TILEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L K + R P R L+L PTRELA QVA + Y K NL A++ GG+ + Q Sbjct: 82 QRLMKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQ 141 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L+ G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 142 TLELKAGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 201 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TR TLLFSAT + E+++++ ++LQNP IEV ++TA T+E F K+ ALL Sbjct: 202 KTRTTLLFSATFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYRVNDD-DKRHALL 260 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q+++S+D +K +F N K L +LE+ G A+HG+ Q R+K L FK+G Sbjct: 261 -QIVRSKD-IKQAFVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKKGE 318 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDI 354 + L+V +D+AARGLDI DV VFN D+P AE+Y+HRIGRTGRAG G A + V D Sbjct: 319 VDLLVCTDVAARGLDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASGLAVSFVGGGNDA 378 Query: 355 KHIDAIEKLIEKKVD 369 + + IEKLI+ K++ Sbjct: 379 RLVADIEKLIKTKIE 393 >gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71] gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71] Length = 443 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 174/400 (43%), Positives = 249/400 (62%), Gaps = 7/400 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS +++ AV GY K TPIQ K IPLVL+ D+ AQTGTGKTA F LPML Sbjct: 1 MLFKDLSLSAELLRAVEKQGYDKATPIQQKAIPLVLEGSDLLAGAQTGTGKTAGFTLPML 60 Query: 61 TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L+ G A+ P+ L+L PTRELAAQV ++ YG A++ GG+ Q + Sbjct: 61 QRLQNKYPGTAK-SYPKALVLTPTRELAAQVHESVRDYGAYLPFKSAVIFGGVSINPQKQ 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL +G DV++ TPGR+LDH + + ++ IEILV+DEADRMLDMGFI I+ + ++P Sbjct: 120 KLIKGVDVVVATPGRLLDHVQQRSIDLSKIEILVLDEADRMLDMGFIHDIRRVMKVIPKQ 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT ++E++K++ FL+NP++I+V TP +TA + V + K+ L QQ Sbjct: 180 RQTLLFSATFSNEIKKLASEFLENPQQIQV-TPQNTATKLVSQRVYPVDKGRKRELLSQQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + + +IF K L L K G S AIHGN Q +R + L+ FK G I+ Sbjct: 239 I--GEGNWQQVLIFTRTKHGANRLAEQLSKDGISSAAIHGNKSQGARTRALAEFKSGAIR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARG+DI + HV N+++PN AE+YIHRIGRT RAG+ G A +LV +++K + Sbjct: 297 ALVATDIAARGIDIDKLPHVVNYELPNVAEDYIHRIGRTARAGQEGHAISLVCVDELKLL 356 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397 IEKL+ ++ + ++P ++ I R+N+ Sbjct: 357 RDIEKLLGSAIEKVYLPGFEIDPSIKAEPIQNGRGGRQNS 396 >gi|307824474|ref|ZP_07654699.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] gi|307734458|gb|EFO05310.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] Length = 441 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 172/408 (42%), Positives = 250/408 (61%), Gaps = 14/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +++ AV D GYV PTP+Q K IPL+L+ DV AQTGTGKTASF LP+L Sbjct: 1 MSFAQLGLADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLL 60 Query: 61 TILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + R R LIL PTRELAAQV ++ + YG + ++GG Q + Sbjct: 61 QRLAENHDPHQKPRRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG D+++ TPGR++DH + + ++N+E+LV+DEADRMLDMGF+P I+ + +L+P Sbjct: 121 QLRRGCDIVVATPGRLIDHVQQRNINLSNVEVLVLDEADRMLDMGFLPDIKQLMALIPKK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ+LLFSAT+ + ++ ++ L NP +EV ++TAE + +Y ++ LL Sbjct: 181 RQSLLFSATVPNAIKSLAAQLLNNPVEVEVAKQNATAENVAERVYGIGREYKRE--LLSY 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ S + K ++F K L L + G A+HG+ Q +R K L FK G + Sbjct: 239 LIGS-NNWKQVLVFVRTKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALEQFKTGKVS 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI D+ HV NFDVP E+YIHRIGRTGRAG +G+A +LV E+ + Sbjct: 298 VLVATDIAARGLDIDDLPHVVNFDVPQVPEDYIHRIGRTGRAGANGEALSLVCPEEAWML 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 IEKL+++++ + D L+ ID + N P K+TG Sbjct: 358 VEIEKLLKRQIPRV-ADTGYEPVSLKVIDAPKKN-------APNKTTG 397 >gi|302335558|ref|YP_003800765.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084] gi|301319398|gb|ADK67885.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084] Length = 510 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 164/389 (42%), Positives = 233/389 (59%), Gaps = 12/389 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DFA LGL + AV D GY PTP+Q ++IP L+ DV AQTGTGKTA+F+LP L Sbjct: 44 DFASLGLGALTLAAVRDMGYEVPTPVQARSIPPALRGRDVIAAAQTGTGKTAAFLLPSLD 103 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L +A + P L++ PTRELA Q+ + T A ++GG+ +E Q + L R Sbjct: 104 GLPHAQA-GQGPLMLVVTPTRELAQQIDEVARAICARTGHTAATVVGGVGYEPQRRALRR 162 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+L+ TPGR++D ++G + +++LV+DEADRMLDMGF+P ++ I P RQTL Sbjct: 163 GCDLLVATPGRLIDLMDQGDAHLGEVQVLVLDEADRMLDMGFLPAMRKIVGRTPEGRQTL 222 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ + +E+ +++P R+E+ + AETIE FV + +K AL L Sbjct: 223 LFSATLDGHVTSNTESLVKDPVRVEIAHKGTAAETIEQ-FVLGVSPEAKHAALTHVL--E 279 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+FC K +C L ++GFS IHGN Q R + L F+EG++ ++VA Sbjct: 280 NEGAERVIVFCRGKHRADGICRRLRRKGFSAAPIHGNRSQNQRERALRGFREGSVGVLVA 339 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARG+DIPDV +V NFDVP AE+YIHRIGRTGRAG G A T V ++D + +E Sbjct: 340 TDVLARGIDIPDVAYVVNFDVPGDAEDYIHRIGRTGRAGESGWALTFVTEDDYLDLRDVE 399 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 KL+ G + P ID+ +H Sbjct: 400 KLM--------GRVVPTYPRAHGIDLGEH 420 >gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761630|ref|ZP_04759717.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241373938|gb|EER63471.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 458 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 161/373 (43%), Positives = 237/373 (63%), Gaps = 4/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LGL +V A+ GY KPTPIQ + IP +L+ D+CGIAQTGTGKTA+F LP + Sbjct: 6 VSFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALPSI 65 Query: 61 TILEKG-RARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L +AR R R LIL PTRELA+Q+A Y ++ ++V + GG+P Q + Sbjct: 66 HYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRM 125 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RG D+L+ TPGR+LD ++ L++ ++E+ V+DEAD+MLD+GFI ++ I L+P R Sbjct: 126 LDRGTDILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNR 185 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM +Q++S FL +P + V SSTAE +E + + S+K ALL Sbjct: 186 QTLFFSATMPKTIQELSSQFLSDPVTVSVAPQSSTAERVEQFGI--FVNQSEKQALLTIT 243 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ + ++F K + LE G AIHGN Q R + L+ F+ G +++ Sbjct: 244 LKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKI 303 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+P V HVFN+++PN AE Y+HRIGRT RAGR G+A + +A ++ ++ Sbjct: 304 LVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSYLR 363 Query: 359 AIEKLIEKKVDWL 371 +IE+L K+ L Sbjct: 364 SIERLTRVKLQIL 376 >gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614] gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614] Length = 436 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 175/419 (41%), Positives = 249/419 (59%), Gaps = 13/419 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGLS +V AV + GY PTPIQ K IPL+L+ D+ G+AQTGTGKTA+F LP++ Sbjct: 3 DFQSLGLSNGLVTAVSENGYDTPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPLID 62 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L EK +A + R LIL PTREL Q+A N + K+ L V+ ++GG+ Q K+L Sbjct: 63 RLQAEKKKAVPKGTRALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD +R + + LV+DEAD+MLD+GFI ++ I LV RQ Sbjct: 123 SKGTDILVATPGRLLDLVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVADKRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++ ++++++L+NP+R+EV TA+ + V + SK L+ QL Sbjct: 183 TLLFSATMPKQINELAQSYLRNPERVEVAPAGKTADKVTQS-VHFMDKNSKGDFLVDQLR 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + ++FC K L L G S +IHGN Q R + + +EGTI ++ Sbjct: 242 DKPDGLS--LVFCRTKHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKELREGTINVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP V HV+NF++P AE Y+HRIGRT RAG G+A L A E+I Sbjct: 300 VATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAIALCAPEEIGLFRQ 359 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 IEKLI ++ G++ PP+ A A++ + +G KK + Q S Sbjct: 360 IEKLIGIEITVAGGEI----PPMS----AASGRAKRGGSNNRNGSGKPASKKPFRKQSS 410 >gi|317404315|gb|EFV84742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54] Length = 413 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 167/377 (44%), Positives = 237/377 (62%), Gaps = 12/377 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GY PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L + Sbjct: 7 FADLGLADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHL 66 Query: 63 LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + R PR LIL PTREL AQVA++ + YGK+ +LT ++ GG+ Q L Sbjct: 67 LMQSKPEARKAGRPRCLILTPTRELTAQVAESVQTYGKHTSLTSMVMFGGVNINPQISAL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 127 RKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ ++ L NP + V TP +TA + V Q+ K+ L+ ++ Sbjct: 187 NLLFSATFSDEIRSLARGVLNNPGEVSV-TPRNTATELVTQTVHLVEQHHKR-DLISHII 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L L K G + AIHGN Q +R + L+ FK+GT+ ++ Sbjct: 245 R-ESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDGTVTVL 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV +IK + Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKD 363 Query: 360 IEKLIEKKV------DW 370 IE+LI+K + DW Sbjct: 364 IERLIKKTIERKPVADW 380 >gi|149278660|ref|ZP_01884796.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39] gi|149230655|gb|EDM36038.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39] Length = 435 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 164/371 (44%), Positives = 236/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY +PTPIQ ++IP +L D+ G AQTGTGKTA+F +PML Sbjct: 1 MLFEELNLIEPILKALQTEGYTQPTPIQEQSIPTILTSRDLLGCAQTGTGKTAAFAIPML 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L K + PR L+L PTRELA Q+ ++F+ YG+N +L ++ GG+ +AQ Sbjct: 61 QLLNKEHQNAKGPRPIRALVLTPTRELAIQIEESFKAYGRNLSLRHLVIFGGVGQKAQTD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI TPGR+LD N+G + + +IEI V+DEADRMLDMGFI ++ + +P Sbjct: 121 ALHRGVDILIATPGRLLDLMNQGFINLKDIEIFVLDEADRMLDMGFIHDVKKTIAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL FSATM E+QK++ L +P ++EV SSTAE IE + + K LL Sbjct: 181 RQTLFFSATMPPEIQKLANTILVDPLKVEVTPVSSTAEKIEQMIY--FVEKGDKKNLLIH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +LQ + T++ ++F K + L K G AIHGN Q +R + L+NFK T + Sbjct: 239 ILQDK-TIQTALVFTRTKHGADRVVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HV N+++PN E Y+HRIGRTGRAG G +F+ E+ + + Sbjct: 298 ILVATDIAARGIDVDELTHVINYELPNIPETYVHRIGRTGRAGNSGISFSFCDGEEKEFL 357 Query: 358 DAIEKLIEKKV 368 D IEKLI K+ Sbjct: 358 DDIEKLIALKI 368 >gi|312882439|ref|ZP_07742180.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC BAA-2122] gi|309369839|gb|EFP97350.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC BAA-2122] Length = 452 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 165/367 (44%), Positives = 233/367 (63%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEELGYDTPSPIQKQAIPAVLSGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ R + R LIL PTRELAAQ+ +N KY ++ LT ++ GG+ Q KL Sbjct: 61 ERLDNNQRVKGNHVRALILTPTRELAAQIQENVFKYSRHQRLTSQVVFGGVKINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVL+ TPGR++D + + + + +E+LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RKGCDVLVATPGRLMDLYQQKAIKFDQLEVLVLDEADRMLDMGFIHDIRKILNLLPKKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + +P I V +STA T+E A +K +L +L+ Sbjct: 181 NLLFSATFSAEIRQLAKGLVNDPVEISVTPQNSTAVTVEQSVYP--ADKRQKAPMLVELI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + ++FC K L L K + AIHGN Q +R + LS FK G I+++ Sbjct: 239 -TQGKWQQVLVFCRTKHGANRLAQFLNKAEITAAAIHGNKSQGARTRALSEFKTGEIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V NFD+PN AE+Y+HRIGRTGRAG GKAF+LV ++ + Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNVAEDYVHRIGRTGRAGEAGKAFSLVEADEASDLFG 357 Query: 360 IEKLIEK 366 IE+LI+K Sbjct: 358 IERLIQK 364 >gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis ANT/505] gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis ANT/505] Length = 464 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 160/386 (41%), Positives = 243/386 (62%), Gaps = 5/386 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AVL+ GY PTPIQ + IP +++R DV AQTGTGKTA F LP++ Sbjct: 1 MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G +A+ R LIL PTRELA QV++N E+Y K+ +++ ++ GG+ Q ++L Sbjct: 61 ERLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR++D N+ + +++E+LV+DEADRMLDMGFI I+ + + +P RQ Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +DE++ +++ + +P I V ++TA+++ C A ++K ALL L+ Sbjct: 181 NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAV--DKTRKTALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ D + ++F K L LE+ AIHGN Q +R+K L FK G ++++ Sbjct: 239 RTND-WQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLDI ++ HV N+D+PN E+Y+HRIGRTGRAG G A + V +D + Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGATGHAISFVTVDDAVDLYG 357 Query: 360 IEKLIEKKVDWLNGD-LSSLNPPLEK 384 IE+ I + + D +NP E+ Sbjct: 358 IERFIGELIPRAEEDGFEPINPVAER 383 >gi|91789374|ref|YP_550326.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] gi|91698599|gb|ABE45428.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] Length = 579 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 164/374 (43%), Positives = 238/374 (63%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AVL+ GY PTPIQ + IP VL D+ G AQTGTGKTA+F LPML Sbjct: 1 MTFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPML 60 Query: 61 TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L R V R LI+ PTRELAAQV ++ YGK +LT ++ GG+ AQ Sbjct: 61 QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL RG D+L+ TPGR+LDH +G L ++ ++ILV+DEADRMLDMGFI I+ + +LVP Sbjct: 121 IDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE+++++ L++P I+V ++T + I SKK ALL Sbjct: 181 KHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPV--GRSKKKALL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ + ++F K N+ L K G A+HGN Q +R + L FK+GT Sbjct: 239 THIINEHN-WSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGT 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEG 357 Query: 356 HIDAIEKLIEKKVD 369 + IE+ ++ ++ Sbjct: 358 FMQDIERFTKQNIE 371 >gi|148378643|ref|YP_001253184.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC 3502] gi|153933936|ref|YP_001383027.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC 19397] gi|153937665|ref|YP_001386574.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall] gi|148288127|emb|CAL82195.1| putative ATP-dependent RNA helicase rhle [Clostridium botulinum A str. ATCC 3502] gi|152929980|gb|ABS35480.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC 19397] gi|152933579|gb|ABS39078.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall] Length = 425 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 166/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ + GY K TPIQ K+IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + + PRT L+L PTRELA Q+ ++FE YGK NL A++ GG+ Q K Sbjct: 61 QNLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD FN+ + + NIE V+DEADRMLDMG I ++ I S +P Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKA 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E+ K+ ++ +++P R+EV SST +TI + + +K ALL+ Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++++ ++F K+ + L + G AIHGN Q +R + L+NFKEG I+ Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HVFN+++P+ E Y+HRIGRTGRAG G A + E+ K + Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357 Query: 358 DAIEKLIEKKV 368 AIEKLI K++ Sbjct: 358 KAIEKLINKEI 368 >gi|261341381|ref|ZP_05969239.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC 35316] gi|288316692|gb|EFC55630.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC 35316] Length = 457 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 165/387 (42%), Positives = 248/387 (64%), Gaps = 8/387 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P+++ ++ + GYV+PTPIQ K IP VLQ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPEILRSIAEQGYVEPTPIQQKAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR--ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L K + A+ R P R LIL PTRELAAQ+ +N Y + N+ ++ GG+ Q Sbjct: 61 ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++E L NP +EV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLE 383 + IE+L++K++ + + ++P ++ Sbjct: 357 LRDIERLLKKEIPRITTEGYDVDPSIQ 383 >gi|27376558|ref|NP_768087.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110] gi|27349699|dbj|BAC46712.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110] Length = 530 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 163/366 (44%), Positives = 232/366 (63%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+ + A+ + YV PTPIQ +TIP L DV GIAQTGTGKTASF LP+L Sbjct: 18 FQDFGLAEPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILHR 77 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R + + R L+L PTREL+ Q+ D+F YG++ L+ L IGG+P Q + L Sbjct: 78 LLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLM 137 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G +VL+ TPGR+LD L + ++E LV+DEADRMLDMGFI I+ I + +P RQT Sbjct: 138 QGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 197 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ +++++ L++P R+ V SSTAE I + +S K A L +LL+ Sbjct: 198 LFFSATMPKDIAELADSMLRDPARVAVTPVSSTAERINQRIL--QVDFSAKPAFLTKLLK 255 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++F K + +LEK G + AIHGN Q R + L+ F+ G I+ +V Sbjct: 256 DE-PINRALVFTRTKHGADKVVKTLEKAGIAASAIHGNKSQNHRERTLAQFRSGDIRTLV 314 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359 A+D+AARG+D+ + HV NFD+PN E Y+HRIGRT RAG G A +LVA E++ ++ Sbjct: 315 ATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGEELSYLRD 374 Query: 360 IEKLIE 365 IE+LI+ Sbjct: 375 IERLIK 380 >gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] Length = 507 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 160/377 (42%), Positives = 247/377 (65%), Gaps = 8/377 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL+P+++ AVLD GY KPTPIQ + IPLV+ D+ G AQTGTGKTA+F LP+L Sbjct: 23 ITFADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPIL 82 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + P R LIL PTRELA QV ++ + Y K+ + GG+ Q Sbjct: 83 QRILPFASSSPSPAKHPVRALILAPTRELAMQVFESVKTYSKHTPIRAMCAYGGVDIRPQ 142 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L++G ++L+ TPGR+LDH + N+++ LV+DEADRMLDMGF+P + I +++P Sbjct: 143 IAELKKGVEILVATPGRLLDHVENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLP 202 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ+LLFSAT ++E++K+++ L++P IEV + ++TI H V ++Y K+ LL Sbjct: 203 AQRQSLLFSATFSEEIKKLADTMLKSPILIEVARRNQVSDTITH-RVHPVSEYGKR-GLL 260 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +LL+S + ++ I+FC K+ L L++ G AIHG+ Q R+K L FK G Sbjct: 261 TKLLKSGE-IRQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGE 319 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++A+D+AARGLD+ D+ +V N+++P+ E+Y+HRIGRTGRAG+ G A +LV+ ++ Sbjct: 320 TDALIATDVAARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKKGNAISLVSAHEVC 379 Query: 356 HIDAIEKLIEKKVDWLN 372 ++ IEKLI++ ++ + Sbjct: 380 YLVDIEKLIKRPIEQVE 396 >gi|182412765|ref|YP_001817831.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae PB90-1] gi|177839979|gb|ACB74231.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1] Length = 409 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 163/371 (43%), Positives = 228/371 (61%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L LS V+ V+ AGY PTPIQ++ IP+VL D+ G AQTGTGKTA+F LP+L Sbjct: 1 MPFKALQLSAPVLRGVVAAGYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T L G R PR L+LEPTRELAAQV F + + +L + GG+ + Q +L+ Sbjct: 61 TRL--GAHAARAPRVLVLEPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTELK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR++D+ + + + +EILV+DE DRMLDMGF+P +++I P RQT Sbjct: 119 RGVDVIVATPGRLMDYLHDRTINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSAT+ E+Q V+ L+NP R+EV S E+++H A +K LL+ LL Sbjct: 179 LFFSATVPPEIQAVASFALRNPTRVEVGVNRSVNESVKHALYPVAA--DQKFELLEALLA 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F K + L+ SV +H N Q R++ L+ FK G ++MV Sbjct: 237 RTD-FDSVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+DVP + E+Y+HRIGRTGRA G AFTLV E+ + I Sbjct: 296 ATDIAARGIDVAGVSHVINYDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPENAHDVRDI 355 Query: 361 EKLIEKKVDWL 371 E+ I +K+ L Sbjct: 356 ERFIGQKIPEL 366 >gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase domain protein [Thermincola sp. JR] gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR] Length = 529 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 165/370 (44%), Positives = 235/370 (63%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS +++ AV + G+ +PTPIQ + IP++L HDV G AQTGTGKTA+F +P I Sbjct: 7 FESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIP---I 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEK R R + L++ PTRELA QVA+ K GK ++ + GG + Q L+RG Sbjct: 64 LEKLNPRYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGALKRG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH NRG L + ++++LV+DEAD MLDMGFI I+ I P TRQTLL Sbjct: 124 VQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPETRQTLL 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+Q+++ +L+NP+ + V+ T +IE + + K L ++L++ Sbjct: 184 FSATMPHEIQQLARKYLKNPRLVAVSKDELTVPSIEQVYYEV--REKTKLESLCRVLETI 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + IIFC K+ V L SLE +G+ +HG++ Q R K++ FK G + +VA+ Sbjct: 242 D-VTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLVAT 300 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI +V HV N+D+P E Y+HRIGRTGRAGR GKA T + E+ + + IEK Sbjct: 301 DVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRLIEK 360 Query: 363 LIEKKVDWLN 372 +I ++ N Sbjct: 361 IIGARIARKN 370 >gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica DSM 16294] Length = 417 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 168/400 (42%), Positives = 251/400 (62%), Gaps = 8/400 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS ++ A+ + GY PTPIQ K IP++L++ D+ AQTGTGKTA F LP+L + Sbjct: 7 FNSLGLSAPILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFTLPLLEL 66 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L EK + R LIL PTRELAAQV ++ YGK+ ++ GG+ Q L Sbjct: 67 LSREKPTKQKHKIRALILTPTRELAAQVGESVALYGKHLPFKSTVIFGGVKINPQISNLR 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D++I TPGR+LDH ++ + + +E L++DEADRMLDMGFI I+ I +++P RQT Sbjct: 127 KGTDIVIATPGRLLDHISQKTIDLREVEYLILDEADRMLDMGFINDIKKILNIIPNQRQT 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +D ++K+S FL PK IEV ++++E ++ + ++K LL L+ Sbjct: 187 LLFSATYSDAIKKLSNQFLNAPKLIEVARANTSSEIVKQAVY--HVDKTRKRELLTHLI- 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F K L LE G + AIHGN Q +R K L++FK+G ++++V Sbjct: 244 NEGKWQQVLVFTRTKHGANRLSGQLESDGITAVAIHGNKSQNARTKALADFKKGDVRVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV N+++PN +E+Y+HRIGRTGRAG G+A +LV ++ + + I Sbjct: 304 ATDIAARGIDIDQLPHVINYELPNVSEDYVHRIGRTGRAGNGGEAISLVCVDEDEFLQNI 363 Query: 361 EKLIEKKVD--WLNGDLSSLNPPLEKIDIAQHNHARKNNP 398 EKLI+K + WL G + E I++ + AR N P Sbjct: 364 EKLIKKDIPKVWLKGFKPDPSIKAEPINMGGNRGAR-NKP 402 >gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 518 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 171/392 (43%), Positives = 246/392 (62%), Gaps = 12/392 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +L LSP ++ A+ GY+KP+PIQ + IP VL D+ G AQTGTGKTA+F LP++ Sbjct: 1 MNFDELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPII 60 Query: 61 TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K R + + R LIL PTRELA Q+ +N E+YG + A++ GG+ + Q + Sbjct: 61 QNLMERPKNRQKKKPVRALILTPTRELALQIHENIEEYGAGTPINSAVIFGGVSAKPQIQ 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+L+ TPGR+LD + ++ ++ +EI V+DEADRMLDMGFI ++ + +L+P Sbjct: 121 SLRRGIDILVATPGRLLDLIGQHEIDLSFVEIFVLDEADRMLDMGFIHDVKRVITLLPKK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM DE+Q ++ L NP ++EV SST + IE Y + K LL Sbjct: 181 RQTLLFSATMPDEIQALAAKLLHNPVKVEVTPVSSTVDLIETSLY--YVDKANKWPLLVH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ +D + + ++F K L K G + AIHG+ Q +R LSNFK G ++ Sbjct: 239 LLEHED-VSSTLVFTRTKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSGRLR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ V NFD+PN E Y+HRIGRTGRAG G+A + E+ ++ Sbjct: 298 VLVATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYV 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNP-PLEKIDIA 388 IEKL K + + GD +P P+E +IA Sbjct: 358 KDIEKLTGKTIQVI-GD----HPYPMEVFEIA 384 >gi|307545041|ref|YP_003897520.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581] gi|307217065|emb|CBV42335.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581] Length = 433 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 171/368 (46%), Positives = 235/368 (63%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL +++ A+ GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LPML Sbjct: 1 MSFSDLGLRAELLSAIEAQGYTEPTPIQRQAIPAVLEGGDLLASAQTGTGKTAGFTLPML 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R R L+L PTRELAAQV ++ YG++ +LT ++ GG+ + Q + Sbjct: 61 QRLADGKRPAKRGVRALVLTPTRELAAQVGESVRDYGRHLSLTSHVIFGGVGQQPQVDAI 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD +G + ++ +E LV+DEADRMLDMGFI I+ + L+P RQ Sbjct: 121 RPGLDILVATPGRLLDLQQQGHVDLSGVETLVLDEADRMLDMGFIHDIRKVLKLLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQL 238 LLFSAT ++E+Q ++ L P IEV ++TAET+E A Y KK LL L Sbjct: 181 NLLFSATFSNEIQTLANQLLDRPTLIEVARRNTTAETVEQ---AVYRVDREKKRDLLAHL 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +QSQ + ++F K L L K+ AIHGN Q +R K LS FK G +Q+ Sbjct: 238 IQSQRWFQV-LVFTRTKHGANRLAEHLGKRDIPAMAIHGNKSQSARTKALSAFKSGDLQV 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI ++ HV NF++PN AE+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 297 LVATDIAARGLDIDELPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHGLLK 356 Query: 359 AIEKLIEK 366 IEKLI++ Sbjct: 357 NIEKLIKR 364 >gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain [Cupriavidus taiwanensis LMG 19424] gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain [Cupriavidus taiwanensis LMG 19424] Length = 511 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 169/390 (43%), Positives = 239/390 (61%), Gaps = 11/390 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F GL +++ A+ + GY PTPIQ + IP+VL DV G AQTGTGKTA F LP Sbjct: 32 FDSFGLDARILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQR 91 Query: 59 MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + R P R L+L PTRELA QV DN +Y K+ +L ++ GG+ Q Sbjct: 92 LLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTD 151 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG ++L+ TPGR+LDH + + ++ +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 152 ALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQ 211 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E+++++ ++L+ P IEV +ST E + V K+ A++ Sbjct: 212 RQTLLFSATFSPEIKRLASSYLKQPVTIEVARSNSTNENVRQA-VYQVEDGHKQAAVVHL 270 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q + I+F N K L LE++G + AIHG+ Q RM+ L FK GT Sbjct: 271 LKQRAEQSQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKSGT 330 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKEDI 354 I +VA+D+AARGLDIPD+ V NFD+P AE+Y+HRIGRTGRAG G A ++ V D Sbjct: 331 IDALVATDVAARGLDIPDMPCVINFDLPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDE 390 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 + + IEKLI++ + G L +P E+ Sbjct: 391 RLLSDIEKLIKRSIP--RGKLEGFDPTGER 418 >gi|163855229|ref|YP_001629527.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804] gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii] Length = 476 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 162/371 (43%), Positives = 235/371 (63%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FAD GL P+++ +V D GY PTPIQ + +P V+ DV G AQTGTGKTA+F LP+L Sbjct: 19 FADFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPILHR 78 Query: 61 --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + R P RTLIL PTRELA QV ++ ++Y K+ L A++ GG+ Q + Sbjct: 79 LMPLANTSASPARHPVRTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGPQKE 138 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG ++L+ TPGR+LDH + + ++ + ILV+DEADRMLDMGF+P + I L+P Sbjct: 139 ALRRGCEILVATPGRLLDHVEQKTVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPAQ 198 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT ++E++K+ +L P IEV ++TA+T+ +A K A + Sbjct: 199 RQGLLFSATFSNEIRKLGRTYLNQPVEIEVAARNATADTVSQ--IAYQMPSDAKRAAVVH 256 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S+ +K I+F N K L LE+ G +IHG+ Q RMK L FK G ++ Sbjct: 257 LVKSRG-LKQVIVFSNTKIGTARLARELERDGVRAESIHGDKSQADRMKALDAFKAGELE 315 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ V V N+D+P+ AE+Y+HRIGRTGRAG G+A L ++ +++ Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPHNAEDYVHRIGRTGRAGASGEAIALFTADETRYL 375 Query: 358 DAIEKLIEKKV 368 IEKL ++ V Sbjct: 376 QDIEKLTKRPV 386 >gi|170759986|ref|YP_001785987.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch Maree] gi|169406975|gb|ACA55386.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch Maree] Length = 425 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 166/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ + GY K TPIQ K+IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + + PRT L+L PTRELA Q+ ++FE YGK NL A++ GG+ Q K Sbjct: 61 QNLSKDKKVNKDPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD FN+ + + NIE V+DEADRMLDMG I ++ I S +P Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKA 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E+ K+ ++ +++P R+EV SST +TI + + +K ALL+ Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++++ ++F K+ + L + G AIHGN Q +R + L+NFKEG I+ Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HVFN+++P+ E Y+HRIGRTGRAG G A + E+ K + Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357 Query: 358 DAIEKLIEKKV 368 AIEKLI K++ Sbjct: 358 KAIEKLINKEI 368 >gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 502 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 177/439 (40%), Positives = 260/439 (59%), Gaps = 18/439 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+P+++ A+ D GYV PTPIQ + IP+VL+ DV G AQTGTGKTA F LP++ + Sbjct: 25 FQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQL 84 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QVA N + Y ++ L ++ GG+ Q Sbjct: 85 LMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTA 144 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G +++I TPGR+LDH + + ++ +ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 145 ALRGGVEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 204 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ L+FSAT + E++K++ FL++P IEV ++TAE + + + +K+ A+ Sbjct: 205 RQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQ-IIYKVEEEAKRDAV--S 261 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + +K I+F N K L LE +G AIHG+ Q RM+ L FK GTI+ Sbjct: 262 FIIRERGLKQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGTIE 321 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G A +L + +D + + Sbjct: 322 VLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKDARLL 381 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH------ARKNNPIPQKSTGFDRRKK 411 IEK+I+ K ++ +L P + H+ RK+ P+ S +R Sbjct: 382 VDIEKMIKHK--FVPAELIGFTPSSGRTAERSHDRRAHERSPRKDESAPRPSRAPERSPG 439 Query: 412 NYS--SQKSHIPLKESEKI 428 S S+ ++ EKI Sbjct: 440 AASNGSRSAYAAAPRKEKI 458 >gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum 'So ce 56'] gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum 'So ce 56'] Length = 478 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 240/372 (64%), Gaps = 4/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADL L ++ A+ GY PTPIQ + IP +L+ +D+ G AQTGTGKTA+F LP+L Sbjct: 1 MQFADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPIL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + G R R L+L PTRELAAQVA++F YGKN L A++ GG+ Q + L Sbjct: 61 QRLAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DVL+ TPGR+LD ++G ++ LV+DEADRMLDMGFI I+ + +++P RQ Sbjct: 121 RRGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++ K++ + L++P R+EV ++TAE I+ V + + S K A+L+ +L Sbjct: 181 TLLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVV--FVERSDKRAMLEHVL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ I+F K + L + AIHGN Q +R + L++FK+GT ++ Sbjct: 239 KD-PALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI D+ HV N+D+PN E+Y+HRIGRT RAG G A + E+ ++ Sbjct: 298 VATDIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLAD 357 Query: 360 IEKLIEKKVDWL 371 IE+LI+K++ L Sbjct: 358 IERLIQKRLPLL 369 >gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas eutropha C91] gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91] Length = 488 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 235/372 (63%), Gaps = 8/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS +++ AV+D GY+ PTPIQ + IP +L DV AQTGTGKTA F LP+L Sbjct: 7 FEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLLHH 66 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L+ + P R LI+ PTRELA Q+ ++ KYGK L ++ GG+ E Q Sbjct: 67 LQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIEPQIT 126 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L G ++L+ TPGR+LD + + EILV+DEADRMLDMGF+P I+ + +L+P Sbjct: 127 ELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALLPSQ 186 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ+L+FSAT +DE++K+++ L++P RIEV ++ E+I H V + K ALL Sbjct: 187 RQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISH--VVHRIKPESKFALLLH 244 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ QD +K ++F K L L AIHG+ +Q+ R + LS FK G +Q Sbjct: 245 LVKQQD-LKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQ 303 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + HV N+++P E+Y+HRIGRTGRAG GKA +LV++ + + + Sbjct: 304 ILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETELL 363 Query: 358 DAIEKLIEKKVD 369 +IEKL+ K++ Sbjct: 364 TSIEKLLNTKLE 375 >gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3] gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3] Length = 500 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 164/374 (43%), Positives = 235/374 (62%), Gaps = 4/374 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGLS K+V +V GY PTPIQ K IPL+L+ D+ G+AQTGTGKTA+F LP++ + Sbjct: 12 FSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEM 71 Query: 63 LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R R RTLIL PTREL Q+ +N + K L + ++GG Q +LE Sbjct: 72 LMKQADRPANRTTRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQLQLE 131 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGR+LD R + ++ + LV+DEAD+MLD+GFI ++ I+ +VP RQT Sbjct: 132 KGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAKRQT 191 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + +++ NFL +P ++EV P A+ +E +V A + K LL++ L Sbjct: 192 LLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQ-YVHFVAGKNDKTDLLKKSLN 250 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+F K L LE GF V +IHGN Q R + L FK+G I+++V Sbjct: 251 ENPDGRS-IVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLV 309 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIP V HVFN+D+P + Y+HRIGRT RAGR G A A ++ + + I Sbjct: 310 ATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDI 369 Query: 361 EKLIEKKVDWLNGD 374 EKL++ + +G+ Sbjct: 370 EKLMKIDIPVASGE 383 >gi|157962744|ref|YP_001502778.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847744|gb|ABV88243.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 468 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 167/372 (44%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V AV + GY PTPIQ KTIP++L + ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSTPIVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L K R + R LIL PTRELA QV DN +YGK+ +LT + GG+ + Q ++L Sbjct: 61 EMLSKSETQRKKRIRALILTPTRELAVQVEDNISQYGKHLDLTSMAMYGGVDSKPQRERL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD + + + + +E LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IQGVDILVATPGRLLDMYTQRAIHFDELEFLVLDEADRMLDMGFIEDINKIIEKLPVDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT++ ++++++ + P I V + IE V KK ALL L+ Sbjct: 181 SLLFSATLSRQVKELARATITRPIEISVTHNTDNKPKIEQWLVT--VDKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++ + +IF K+ L LEK+G + IHG Q R +IL++FK G I L+ Sbjct: 239 Q-ENNWQQALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKSGKIGLL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ +AARGLDI ++ V N+D+P A+ YIHRIGRTGRAG +G+A LV+K+D K++ Sbjct: 298 IATGIAARGLDIDELPLVINYDLPYPADEYIHRIGRTGRAGANGEAVALVSKDDFKNLCM 357 Query: 360 IEK----LIEKK 367 IE LIE++ Sbjct: 358 IETRLGHLIERR 369 >gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS] gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS] Length = 496 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 167/373 (44%), Positives = 237/373 (63%), Gaps = 9/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ + AV + GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + K + R P R L+L PTRELA QVA + Y K NL ++ GGI + Q Sbjct: 65 MLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQTL 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQNP IEV P+ TA T+E F + ++ L+Q Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVSDDDKRRA--LKQ 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ Q + +F N K L SLE+ G A+HG+ Q R+K L++FK G + Sbjct: 243 IVK-QRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356 L+V +D+AARGLDI DV VFNFD+P AE+Y+HRIGRTGRAG G A + + D + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARL 361 Query: 357 IDAIEKLIEKKVD 369 + IEKLI+KK++ Sbjct: 362 VADIEKLIKKKIE 374 >gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein family protein [Pseudoalteromonas tunicata D2] gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein family protein [Pseudoalteromonas tunicata D2] Length = 413 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 180/420 (42%), Positives = 254/420 (60%), Gaps = 17/420 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ ++V A+ + GY PTPIQ I +LQ DV AQTGTGKTA+F LP+L Sbjct: 1 MGFAALGLNQQLVQALTECGYDTPTPIQTAAIGEILQGKDVMAGAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R RTL+L PTRELA QV +FEKYG++ LT AL GG+ Q K ++ Sbjct: 61 QRLAEQPERKGQLRTLVLTPTRELAQQVFASFEKYGQHSELTAALAYGGVSIGEQIKAIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+++ TPGR+LDH +G + ++N++ LV DEADRMLDMGFI I NI +P RQT Sbjct: 121 AGVDIMVATPGRLLDHLVKGTVNLSNVQYLVFDEADRMLDMGFIDEINNILRRLPKERQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT D + K+S+ L P IEVN + A +E A A +K L+ L+ Sbjct: 181 LLFSATFDDAIFKLSKKLLNQPVLIEVNQRNQAASEVEQIVYAVDA--DRKRELISHLIG 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + ++F K+ L + K G AIHG+ Q +R K LS FKEG +++V Sbjct: 239 AKN-WQQVLVFTRTKQTADELAKEMCKDGLKTQAIHGDKSQGARDKALSEFKEGKTRVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + +V N+++P AE+YIHRIGRTGRAG G A +L++ ++ ++ I Sbjct: 298 ATDVAARGIDIQQLQYVINYELPYIAEDYIHRIGRTGRAGEKGLAISLLSIDENWLLEEI 357 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 E +++K++ WL G P L K + + RKN + +K R KK S QK+ Sbjct: 358 EAVLDKRLPQQWLPG----YEPDLTKEPVDK----RKNGKVAEKR----RAKKRLSGQKT 405 >gi|56460599|ref|YP_155880.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] gi|56179609|gb|AAV82331.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] Length = 372 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 231/370 (62%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+DL LSP+ + A+ GY + TPIQ + IPLVL DV AQTGTGKT +F P+L Sbjct: 1 MNFSDLALSPETLTALSRQGYSESTPIQAEAIPLVLAGKDVMAAAQTGTGKTTAFTAPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ RA+ R LIL PTRELAAQV +N L A+ GG+ Q KL Sbjct: 61 ELLKSNERAKANTARVLILTPTRELAAQVGENVANLSAGLPLNYAVAFGGVKINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD + + + +E+LV+DEADRMLDMGFI I+NI L+P RQ Sbjct: 121 RKGVDILVATPGRLLDLYKQNAVRFPKLEVLVLDEADRMLDMGFIHDIKNIIKLLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +D+++ +++ L++P I V P++TAE IE Y + L L Sbjct: 181 TLLFSATFSDDIRALAKGLLKSPVEISVALPNATAEPIEQTL---YEVQKSQKLGLLLKL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++F K+ L L+K GFS AIH Q +R K L++FK +Q++ Sbjct: 238 LKSLDLPQVLVFSRTKQGANRLVKQLDKAGFSAAAIHSAKSQGARTKALADFKSAKVQML 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+A+RG+DI + +V N+D+P+ AE+YIHRIGRTGRAG+ G A +LV ED+ + A Sbjct: 298 IATDIASRGIDIEKLPYVINYDLPHVAEDYIHRIGRTGRAGQTGHAISLVTDEDVAALKA 357 Query: 360 IEKLIEKKVD 369 IE+LI + ++ Sbjct: 358 IEELIGETIE 367 >gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] Length = 537 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 167/372 (44%), Positives = 233/372 (62%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA LGL+ ++ A+ D GY PTPIQ K IPLVL D+ AQTGTGKTA F LP+L Sbjct: 5 LTFASLGLAEPLLRAISDTGYTTPTPIQAKAIPLVLAGGDLLAAAQTGTGKTAGFTLPVL 64 Query: 61 TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L PR LIL PTRELAAQV ++ + YGK+ LT ++ GG+ Q Sbjct: 65 HKLAATHVHPHPAGKPRCLILTPTRELAAQVEESVQTYGKHLALTSMVMFGGVNINPQIS 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++ D+L+ TPGR+LDH + L ++ +EILV+DEADRMLDMGFI I+ + +L+P Sbjct: 125 ALKKRVDILVATPGRLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++ L NP +EV ++ +E +E V Q K+ LL Sbjct: 185 RQNLLFSATFSDEIRDLANGLLHNPGCVEVAPRNTASERVEQT-VYMIGQKQKR-ELLAW 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ + + ++F K L L K AIHGN Q +R + LS FK+G++ Sbjct: 243 LIKEKQWFQ-ALVFTRTKHGANKLAEYLTKHDIPAAAIHGNKSQSARTRALSQFKDGSLP 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV E++K + Sbjct: 302 VLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGADGNAISLVDGEEVKLL 361 Query: 358 DAIEKLIEKKVD 369 AIE+LI +K+D Sbjct: 362 TAIERLIRRKID 373 >gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas naphthalenivorans CJ2] Length = 571 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 163/374 (43%), Positives = 238/374 (63%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AVL+ GY PTPIQ + IP VL D+ G AQTGTGKTA+F LP+L Sbjct: 1 MKFEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLL 60 Query: 61 TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L R V R LI+ PTRELAAQV ++ YGK +LT ++ GG+ AQ Sbjct: 61 QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +KL RG D+L+ TPGR+LDH ++G L ++ ++IL++DEADRMLDMGFI I+ + +LVP Sbjct: 121 IEKLRRGVDILVATPGRLLDHASQGTLDLSQVQILILDEADRMLDMGFIHDIKKVLALVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +QTLLFSAT +DE+++++ L+NP I+V ++T + I SKK ALL Sbjct: 181 KQKQTLLFSATFSDEIRELANGLLRNPLSIQVTPRNTTVQRITQTIHPV--GRSKKKALL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ + ++F K N+ L K G A+HGN Q +R + L FK G Sbjct: 239 THIINEHN-WSQVLVFTRTKFGANNVAEHLTKAGIPAMALHGNKSQTARTQALQGFKNGD 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGQAVSLVCLDEEG 357 Query: 356 HIDAIEKLIEKKVD 369 + IE+ ++ ++ Sbjct: 358 FMQDIERFTKQNIE 371 >gi|168183325|ref|ZP_02617989.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf] gi|182673470|gb|EDT85431.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf] Length = 425 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 166/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ + GY K TPIQ K+IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + + PR L+L PTRELA Q+A++FE YGK NL A++ GG+ Q K Sbjct: 61 QNLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD FN+ + + NIE V+DEADRMLDMG I ++ I S +P Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKI 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E+ K+ ++ +++P R+EV SST +TI + + +K ALL+ Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++++ ++F K+ + L + G AIHGN Q +R + L+NFKEG I+ Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HVFN+++P+ E Y+HRIGRTGRAG G A + E+ K + Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357 Query: 358 DAIEKLIEKKV 368 AIEKLI K++ Sbjct: 358 KAIEKLINKEI 368 >gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 473 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 166/377 (44%), Positives = 242/377 (64%), Gaps = 10/377 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FAD GL PK+ AV + GY PTPIQ ++IP VL D+ G AQTGTGKTA+FVLP++ Sbjct: 28 ITFADFGLDPKIQKAVAEQGYSIPTPIQAQSIPHVLAGSDLMGAAQTGTGKTAAFVLPII 87 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + + P R L+L PTRELA QVA+N Y K+ +L A++ GG+ + Q Sbjct: 88 QQILRHASNSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQ 147 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L G ++LI TPGR+LDH ++ +EILV+DEADRMLDMGF+P +Q I L+P Sbjct: 148 VAILRNGVEILIATPGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIIDLIP 207 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT + E++K+++++L+ P +EV ++ A+T++ V + K+ A++ Sbjct: 208 AQRQTLLFSATFSPEIKKLAQSYLRTPVTVEVARQNAAADTVKQV-VHMVSSGDKQRAIV 266 Query: 236 QQLLQSQDTM---KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++L+++ + + IIF N + L +LE+ G AIHG+ Q R L FK Sbjct: 267 -KVLEARTRLGLSRQCIIFTNSRLGCAKLARALERDGIKAGAIHGDKSQGERTLTLDAFK 325 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I+ +VA+D+AARGLDIPD+ V N ++P AE++IHRIGRTGRAG G A LV Sbjct: 326 SGAIEALVATDVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDAS 385 Query: 353 DIKHIDAIEKLIEKKVD 369 + + +D IEKL+++K+D Sbjct: 386 EKRLLDDIEKLMKRKLD 402 >gi|329905919|ref|ZP_08274297.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium IMCC9480] gi|327547410|gb|EGF32236.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium IMCC9480] Length = 446 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 169/374 (45%), Positives = 234/374 (62%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFAQLGLSADIVRAVTEHGYTIPTPIQAQAIPAVLLGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRAR------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L + R R LIL PTRELAAQV ++ YGK LT ++ GG+ Sbjct: 61 HRLSTSTSAPTTNTATRPIRALILAPTRELAAQVEESVRTYGKYLKLTSTVIFGGVGINP 120 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q K L+ G D+L+ TPGR+LDH +G + ++ +EIL++DEADRMLDMGFI I+ + +++ Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMGQGTVNLSQVEILILDEADRMLDMGFIKDIKKVLAVL 180 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT ++E++ +++ L PK IEV +ST E I KK L Sbjct: 181 PKKRQNLLFSATFSEEIKTLADGLLNAPKMIEVARRNSTVEIIAQKIYPV--DRDKKHPL 238 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+++ + ++F K L LEK G S AIHGN Q +R K L+ FK+G Sbjct: 239 LAHLIKTNN-WPQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTKALAEFKDG 297 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +Q++VA+D+AARG+DI + HV N+D+PN E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 298 KLQVLVATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGATGEAVSLVCVDEH 357 Query: 355 KHIDAIEKLIEKKV 368 + + IEKLI++++ Sbjct: 358 EMLRDIEKLIKREL 371 >gi|226947893|ref|YP_002802984.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str. Kyoto] gi|226840806|gb|ACO83472.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str. Kyoto] Length = 425 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 165/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ + GY K TPIQ K+IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPIL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + + PRT L+L PTRELA Q+ ++FE YGK NL A++ GG+ Q K Sbjct: 61 QNLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD FN+ + + NIE V+DEADRMLDMG I ++ I S +P Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPRG 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E+ K+ ++ +++P R+EV SST +TI + + +K +LL+ Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRSLLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++++ ++F K+ + L + G AIHGN Q +R + L+NFKEG I+ Sbjct: 239 LLKDE-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HVFN+++P+ E Y+HRIGRTGRAG G A + E+ K + Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357 Query: 358 DAIEKLIEKKV 368 AIEKLI K++ Sbjct: 358 KAIEKLIHKEI 368 >gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga lytica DSM 7489] gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM 7489] Length = 429 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 166/365 (45%), Positives = 240/365 (65%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS ++ A+ GY P+PIQ K IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MTFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + +A R R R LIL PTRELAAQ+ N ++Y + +L A++ GG+ + Q L Sbjct: 61 HLLSEQKALRHRPVRALILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIANL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG DVL+ TPGR+LD N+ L ++ +EI V+DEADRMLDMGF+ I+ + L+P RQ Sbjct: 121 KRGMDVLVATPGRLLDLHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIERVMKLIPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT + +++K++ L NP ++E TP +TA + V A+ KK L+ +L+ Sbjct: 181 NLMFSATFSKDIKKLAHGILNNPIQVEA-TPENTAVEVIKQKVYRVAK-GKKTGLIIKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S + ++F K NLC + +G S AIHGN Q +R K L FK+GT++++ Sbjct: 239 -SDGNWQQVLVFTRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKGTLRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP + HV N+++PN +E+Y+HRIGRTGRAG G+A +LV+ ++ ++ Sbjct: 298 VATDIAARGLDIPLLPHVINYEIPNISEDYVHRIGRTGRAGASGEAVSLVSADETTYLKD 357 Query: 360 IEKLI 364 I+KLI Sbjct: 358 IQKLI 362 >gi|222054409|ref|YP_002536771.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32] gi|221563698|gb|ACM19670.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32] Length = 451 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 161/364 (44%), Positives = 229/364 (62%), Gaps = 5/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L LSP ++ A+ GY PTPIQ + IPL L+ D+ AQTGTGKTA+F LP L Sbjct: 1 MSFESLQLSPLILKAIAACGYTTPTPIQEQAIPLALEGKDLIASAQTGTGKTAAFTLPAL 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R PR L+L PTRELA QV D YGK +T ++GG+P+ Q + L Sbjct: 61 ERLSVRSPIPGRGPRILVLTPTRELANQVTDAVRNYGKFIRVTSGAILGGMPYREQLQLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 R D+++ TPGR++DH +RG++ ++ +E+L++DEADRMLDMGF + I + P RQ Sbjct: 121 SRPVDLIVATPGRLIDHLDRGRINLSRLELLILDEADRMLDMGFSEDVDRIAAAAPANRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238 TLLF+ATM D + K+++ L++P RIE+ T E IE VA Q+ K +LQ L Sbjct: 181 TLLFTATMDDVMAKLAQRLLKDPVRIEIAGKKMTHEQIEQRLHVADNLQH--KTRMLQHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + T+ IIF K++ L L QG + A+HG++ Q +R K + N + G I+L Sbjct: 239 I-ADGTVTKAIIFSATKRDADLLARDLHAQGHAAAALHGDMSQNARNKTIHNMRRGKIRL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV NFD+P AE+Y+HRIGRTGRAG G A + + D+ ++D Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGATGIAISFASLNDLNYLD 357 Query: 359 AIEK 362 IE+ Sbjct: 358 RIER 361 >gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC 19718] gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC 19718] Length = 498 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 163/374 (43%), Positives = 240/374 (64%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA LGLS +++ AV D GYV PTPIQ + IP +L DV AQTGTGKTA F LP+L Sbjct: 5 VTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLL 64 Query: 61 TILEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L+ + R P R LI+ PTRELA Q+ ++ KYGK L A++ GGI E Q Sbjct: 65 YRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQ 124 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G ++L+ TPGR+LD + + + EILV+DEADRMLDMGF+P I+ + +L+ Sbjct: 125 IAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLS 184 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ+L+FSAT + E++K++++ L+ P RIE ++ E+I H V + + K ALL Sbjct: 185 PQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISH--VIHWVKPDSKFALL 242 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ Q+ +K +IF K +L L + S AIHG+ +Q+ R + L+ FK G Sbjct: 243 LHLIRQQN-LKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGD 301 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+DI + HV N+++P E+Y+HRIGRTGRAG GKA +LV++ + + Sbjct: 302 VQILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKE 361 Query: 356 HIDAIEKLIEKKVD 369 + IEKL+ K++ Sbjct: 362 LLANIEKLLNAKLE 375 >gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01] gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01] gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03] gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07] gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22] gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26] gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32] gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12] Length = 445 Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 162/390 (41%), Positives = 241/390 (61%), Gaps = 12/390 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+DL L+P ++ A+ + GY PTPIQ ++IP +LQ D+ G+AQTGTGKTASF LP+L Sbjct: 4 FSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEH 63 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ RA + PR L+L PTREL AQ++D+F+ Y ++ T A++ GG+ Q + + Sbjct: 64 LIKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVL+ PGR+LD +G + ++ +EILV+DEADRMLDMGF+ I+ I + VP RQT Sbjct: 124 RGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ ++ + L +P R+EV PSST + I+ + K+ ALL + Sbjct: 184 LLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNMV-- 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++F K + L K AIHGN Q +R + + F+ G+++++V Sbjct: 242 ESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVLV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HVFN+D+PN E+Y+HRIGRT RAGR G A + E + I Sbjct: 302 ATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFCDAEQRAWLRDI 361 Query: 361 EKLIEKKV------DW--LNGDLSSLNPPL 382 E+ I K V W + S++ PP+ Sbjct: 362 ERTIGKTVPVVRDHPWHSAEAEASTMRPPV 391 >gi|152988184|ref|YP_001345923.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7] gi|150963342|gb|ABR85367.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7] Length = 635 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 181/454 (39%), Positives = 262/454 (57%), Gaps = 17/454 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R R L+L PTRELAAQV D+F+ Y ++ L + GG+ Sbjct: 61 ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L +G DVL+ PGR+LD + K+ ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A +K A Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 K + AIEK+ +++ +GD +P ++AQ + P Q +RR + Sbjct: 358 EKLLKAIEKMTRQRIP--DGDPQGFDPEAVLPEVAQPEP--REAPQKQPRRDKERRSRER 413 Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447 +++ P +E + QD E A RG Sbjct: 414 KPKEAQAP---AENAAVAGQDGAEKPAGKRRRRG 444 >gi|74317751|ref|YP_315491.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] gi|74057246|gb|AAZ97686.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] Length = 477 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 166/370 (44%), Positives = 235/370 (63%), Gaps = 8/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L+ ++ A+ DAGY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 7 FASLALAEPILRAIADAGYTAPTPIQAQAIPHVLAGGDLLAAAQTGTGKTAGFTLPILHQ 66 Query: 63 LEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L RA V PR LIL PTRELAAQV ++ + YGK +LT ++ GG+ Q K Sbjct: 67 LST-RAAVAPKPGRPRCLILVPTRELAAQVEESVKTYGKYLSLTSMVMFGGVNINPQFKA 125 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ D+L+ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ + +++P R Sbjct: 126 LKARVDILVATPGRLLDHVAQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAVLPKQR 185 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +DE++ ++ L NPK +EV ++TAE +E + K LL L Sbjct: 186 QNLLFSATFSDEIRTLANGLLNNPKSVEVARRNTTAEVVEQSM--HRVPQAHKRDLLAHL 243 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ D + ++F K L L K G + AIHGN Q +R K L++FK+G+++ Sbjct: 244 IKHHD-WQQVLVFTRTKHGANKLAEKLNKDGITAAAIHGNKSQSARTKALASFKDGSVRA 302 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + V NF++PN E+Y+HRIGRTGRAG G A +LV E++ ++ Sbjct: 303 LVATDIAARGIDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGSALSLVDDEEMGYLR 362 Query: 359 AIEKLIEKKV 368 IEKLI++ + Sbjct: 363 DIEKLIKRAI 372 >gi|167624931|ref|YP_001675225.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354953|gb|ABZ77566.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 436 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 168/372 (45%), Positives = 235/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V AV + GY PTPIQ KTIP++L + ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSTPIVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + R + R LIL PTRELA QV DN +YGK+ LT + GG+ + Q ++L Sbjct: 61 EMLSRSETQRKKRIRALILTPTRELAVQVEDNISQYGKHLALTSMAMYGGVDSKPQRERL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + +EILV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDELEILVLDEADRMLDMGFIEDINKIMEKLPVDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT++ ++++++ + P I V + IE V KK ALL L+ Sbjct: 181 TLLFSATLSRQVKELARATIVRPIEISVTHNTDNKPKIEQWLVTV--DKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++ + +IF K+ L LEK+G + IHG Q R +IL++FK G I L+ Sbjct: 239 Q-ENNWQQALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKAGKIGLL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ +AARGLDI ++ V N+D+P A++YIHRIGRTGRAG G+A LV+K+D K++ Sbjct: 298 IATGIAARGLDIDELPLVINYDLPYPADDYIHRIGRTGRAGASGEAVALVSKDDFKNLCM 357 Query: 360 IEK----LIEKK 367 IE LIE++ Sbjct: 358 IESRLGHLIERR 369 >gi|153939895|ref|YP_001390000.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str. Langeland] gi|152935791|gb|ABS41289.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str. Langeland] gi|295318086|gb|ADF98463.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str. 230613] Length = 425 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 165/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ + GY K TPIQ ++IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQERSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + + PR L+L PTRELA Q+A++FE YGK NL A++ GG+ Q K Sbjct: 61 QNLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD FN+ + + NIE V+DEADRMLDMG I ++ I S +P Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E+ K+ ++ +++P R+EV SST +TI + + +K ALL+ Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++++ ++F K+ + L + G AIHGN Q +R + L+NFKEG I+ Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HVFN+++P+ E Y+HRIGRTGRAG G A + E+ K + Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357 Query: 358 DAIEKLIEKKV 368 AIEKLI K++ Sbjct: 358 KAIEKLINKEI 368 >gi|124007618|ref|ZP_01692322.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134] gi|123986916|gb|EAY26681.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134] Length = 441 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 160/369 (43%), Positives = 240/369 (65%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+ +++ A+ D+GY PTPIQ K IPLVL HDV G+AQTGTGKTA+FVLP+L Sbjct: 6 FEDFKLNKQILQAITDSGYENPTPIQEKAIPLVLAGHDVMGVAQTGTGKTAAFVLPILMR 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + PR LIL PTRELA Q+ E Y ++ ++ + GG+ + Q + ++ G Sbjct: 66 IKYAQGM--HPRALILAPTRELAIQIEKAVETYSQHTDIRFTCVYGGLGPKTQIETIQAG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D++I TPGR+LD ++R +L++ +I LV+DEAD+M+DMGF+P I I ++P RQ LL Sbjct: 124 VDIVIATPGRLLDLYSREELVLKDINTLVMDEADKMMDMGFMPQINRILEIIPVKRQNLL 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++QK+SE+FL+ P+ +EV ++TAET+E T K LL L + Sbjct: 184 FSATMPEKVQKLSEDFLEFPEFVEVTPQATTAETVEQVLFET-PNIKTKINLLYHFLADE 242 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS---VCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +T K +IF +KN ++ L ++ FS V IH N Q +R+ ++ FK G I+++ Sbjct: 243 ETFKRVMIFTRTRKNADSVYKFLARK-FSEDQVRVIHANKGQNTRINSMNAFKSGDIRIL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 V +D+ ARG+D+ V HV NFD+P E+Y+HRIGRTGRA + GKA + + + D+ H+ Sbjct: 302 VGTDVVARGIDVTLVSHVINFDIPLIYEDYVHRIGRTGRAMQSGKAISFITEADVYHMKK 361 Query: 360 IEKLIEKKV 368 IE++I +V Sbjct: 362 IEQIIRLQV 370 >gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] Length = 555 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 167/370 (45%), Positives = 235/370 (63%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 7 MSFNSLGLSEPLVRAVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 66 Query: 61 TILEKGRARV-RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L RA ++P R LIL PTRELAAQV + +YGK L ++ GG+ Q Sbjct: 67 ERLSHSRATSGKIPVRALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDA 126 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + +P R Sbjct: 127 LRRGVDIVVATPGRLLDHLQQRTIDLSSLQILVLDEADRMLDMGFIHDIKRVLKYLPSQR 186 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +DE++ +++N L +P IEV ++TAET+ +K LL L Sbjct: 187 QNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVTQTIYPV--DRDRKRELLTHL 244 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ + + ++F K L L K G S AIHGN Q +R + LS FK+GT+Q+ Sbjct: 245 IKAHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQAARTRALSEFKDGTLQV 303 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + + Sbjct: 304 LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAISLVCIDEHQLLT 363 Query: 359 AIEKLIEKKV 368 IE+LI++ + Sbjct: 364 DIERLIKRTL 373 >gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 431 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 162/368 (44%), Positives = 232/368 (63%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L+ ++ A+ + GY PTPIQ IP +LQ D+ G+AQTGTGKTA+F LP+L Sbjct: 4 FADLHLAEPLLRALNEEGYTTPTPIQAGAIPYLLQGRDLLGLAQTGTGKTAAFALPILNH 63 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L KGRA + R L+L PTRELA+Q+AD+F Y ++ T A++ GG+ Q + L Sbjct: 64 LLTSKGRAHPKGARALVLAPTRELASQIADSFASYARHMKFTHAVVFGGVGQGRQIEALR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVL+ PGR+LD +G + + +EILV+DEADRMLDMGF+ I+ I + +P RQT Sbjct: 124 RGVDVLVAAPGRLLDLMGQGHVDLAGLEILVLDEADRMLDMGFVRDIRKIVATLPTDRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + +++ L++P ++V PSST + I + Y K L+ L+ Sbjct: 184 LLFSATMPKSISELAHGLLRDPATVQVTPPSSTVDRIRQAVM--YVDTGNKREALKLLVD 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S ++ ++F K + L + G + AIHGN Q +R + +S F+ G ++++V Sbjct: 242 SPK-VERAVVFTLMKHEANKVAAFLNEHGITAEAIHGNKSQGARERAMSGFRSGAVKVLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HVFN+D+PN E+Y+HRIGRT RAGR G A +L E + I Sbjct: 301 ATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLRDI 360 Query: 361 EKLIEKKV 368 EK I KK+ Sbjct: 361 EKTIGKKI 368 >gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum CMR15] Length = 481 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 167/375 (44%), Positives = 238/375 (63%), Gaps = 8/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F GL P ++ A+ ++GY + TPIQ IP+V+ DV G AQTGTGKTA F LP++ Sbjct: 1 MTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPII 60 Query: 61 TIL----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + R P R LIL PTRELA QV DN KY K+ L A++ GG+ Q Sbjct: 61 QNLLPDASTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++L RG +VL+ TPGR+LDH + + ++ + +LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 121 TEQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT + E++K++ ++L++P+ IEV ++TA+ + + T K+ AL+ Sbjct: 181 AHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQV-IYTVPDGHKQAALV 239 Query: 236 QQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L Q Q I+F N K L +LE++ + AIHG+ Q RM+ L FK+ Sbjct: 240 HLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQ 299 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GT+ ++VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G A +L A D Sbjct: 300 GTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGD 359 Query: 354 IKHIDAIEKLIEKKV 368 + + IEKLI++ + Sbjct: 360 ERLLADIEKLIKRNL 374 >gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] Length = 486 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 167/373 (44%), Positives = 237/373 (63%), Gaps = 9/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L+ + AV + GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L Sbjct: 5 FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + K + R P R L+L PTRELA QVA + Y K NL ++ GGI + Q Sbjct: 65 MLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQTL 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++G +VL+ TPGR+LDH ++N +E +V+DEADRMLD+GF+P +Q I S +P Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E+++++ ++LQNP IEV P+ TA T+E F + ++ L+Q Sbjct: 185 RTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVTDDDKRRA--LKQ 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ Q + +F N K L SLE+ G A+HG+ Q R+K L++FK G + Sbjct: 243 IVK-QRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVD 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356 L+V +D+AARGLDI DV VFNFD+P AE+Y+HRIGRTGRAG G A + + D + Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARL 361 Query: 357 IDAIEKLIEKKVD 369 + IEKLI+KK++ Sbjct: 362 VADIEKLIKKKIE 374 >gi|322804966|emb|CBZ02525.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065] Length = 425 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 165/371 (44%), Positives = 241/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ + GY K TPIQ K+IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + + PR+ L+L PTRELA Q+ ++FE YGK NL A++ GG+ Q K Sbjct: 61 QNLSKDKKANKNPRSIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD FN+ + + NIE V+DEADRMLDMG I ++ I S +P Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKI 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E+ K+ ++ +++P R+EV SST +TI + + +K ALL+ Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++++ ++F K+ + L + G AIHGN Q +R + L+NFKEG I+ Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HVFN+++P+ E Y+HRIGRTGRAG G A + E+ K + Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357 Query: 358 DAIEKLIEKKV 368 AIEKLI K++ Sbjct: 358 KAIEKLIHKEI 368 >gi|218889170|ref|YP_002438034.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] gi|218769393|emb|CAW25153.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] Length = 639 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 174/424 (41%), Positives = 253/424 (59%), Gaps = 16/424 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R R L+L PTRELAAQV D+F+ Y ++ L + GG+ Sbjct: 61 ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L +G DVL+ PGR+LD + K+ ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A +K A Sbjct: 181 LPHKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 K + AIEK+ +++ +GD +P ++AQ + PQK D+ +++ Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSS 411 Query: 414 SSQK 417 +K Sbjct: 412 RERK 415 >gi|85713494|ref|ZP_01044484.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] gi|85699398|gb|EAQ37265.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] Length = 479 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 176/452 (38%), Positives = 258/452 (57%), Gaps = 13/452 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+ + A+ + Y+ PTPIQ +TIP+ L D+ GIAQTGTGKTASF LP+L Sbjct: 10 FQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDIVGIAQTGTGKTASFALPILHR 69 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R + + R L+L PTREL+ Q+ DNF YG++ LT AL IGG+P Q + + Sbjct: 70 LLQNRIKPQPKSCRVLVLSPTRELSGQILDNFNAYGRHLRLTSALAIGGVPMGRQVRSVM 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR+LD L + +E LV+DEADRMLDMGFI I+ + + +P RQT Sbjct: 130 HGVDVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVIAKLPVKRQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ +++ L++P R+ V +ST + I + ++ K A L QLL+ Sbjct: 190 LLFSATMPKDIAELANQMLRDPARVAVTPVASTVDRIAQRII--QVDHASKPAHLAQLLK 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ + +IF K + SL K G AIHGN Q R ++L+ F+ G I+ +V Sbjct: 248 -QEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAAFRTGEIRTLV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359 A+D+AARG+D+ + HV NFD+PN E Y+HRIGRT RAG G A +LVA E++ ++ Sbjct: 307 ATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTEGAAISLVAGAEEMAYLRD 366 Query: 360 IEKLIE----KKVDWLNGDLSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRKKNY 413 IEKLI ++ +G + P + + A H HA + + G RR+ Sbjct: 367 IEKLIRVVIPREDRRTSGQREAAPAPQQHRGGNNAPHGHAARAGDV-SSGKGSRRRRGKG 425 Query: 414 SSQKSHIPLKESEKISKLQQDIQENDADSLGF 445 + Q + P ++ + Q + + F Sbjct: 426 TPQTNRRPESSRQETPRSAQGSKPGGMQGVAF 457 >gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16] gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase [Ralstonia eutropha H16] Length = 520 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 169/390 (43%), Positives = 240/390 (61%), Gaps = 11/390 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F GL +++ A+ + GY PTPIQ + IP+VL D+ G AQTGTGKTA F LP Sbjct: 40 FDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPIIQR 99 Query: 59 MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + R P R L+L PTRELA QV DN +Y K+ +L ++ GG+ Q Sbjct: 100 LLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTD 159 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG ++L+ TPGR+LDH + + ++ +++LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 160 ALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAH 219 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E+++++ ++L++P IEV +ST E + V K+ A++ Sbjct: 220 RQTLLFSATFSPEIKRLASSYLKHPVTIEVARSNSTNENVRQ-MVYLVEDGHKQAAVVHL 278 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q + I+F N K L LE++G + AIHG+ Q RM+ L FK GT Sbjct: 279 LKQRAEQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKSGT 338 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VAKEDI 354 I +VA+D+AARGLDIPD+ V NFDVP AE+Y+HRIGRTGRAG G A ++ V D Sbjct: 339 IDALVATDVAARGLDIPDMPCVVNFDVPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDE 398 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 + + IEKLI++ + G L +P E+ Sbjct: 399 RLLSDIEKLIKRSIP--RGKLEGFDPTGER 426 >gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58] gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58] Length = 502 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 164/374 (43%), Positives = 234/374 (62%), Gaps = 4/374 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS K+V +V GY PTPIQ K IPL+L+ D+ G+AQTGTGKTA+F LP++ + Sbjct: 16 FNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEM 75 Query: 63 LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R R RTLIL PTREL Q+ DN + K L + ++GG Q +LE Sbjct: 76 LMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQLE 135 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD R + ++ + LV+DEAD+MLD+GFI ++ I+ +VP RQT Sbjct: 136 KGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQT 195 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + +++ NFL +P ++EV P A+ +E +V A + K LL++ L Sbjct: 196 LLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQ-YVHFVAGKNDKTDLLKKSLN 254 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+F K L LE GF V +IHGN Q R + L FK+G I+++V Sbjct: 255 ENPDGRS-IVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLV 313 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIP V HVFN+D+P + Y+HRIGRT RAGR G A A ++ + + I Sbjct: 314 ATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDI 373 Query: 361 EKLIEKKVDWLNGD 374 EKL++ + +G+ Sbjct: 374 EKLMKIDIPVASGE 387 >gi|53804862|ref|YP_113487.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str. Bath] gi|53758623|gb|AAU92914.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus capsulatus str. Bath] Length = 453 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 176/381 (46%), Positives = 248/381 (65%), Gaps = 7/381 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FADLGL+ ++ AV +AGYV PTPIQ + IPL+L D+ AQTGTGKTA F LP+L Sbjct: 12 FADLGLAQPLLRAVSEAGYVHPTPIQAQAIPLLLAGGDLLAAAQTGTGKTAGFTLPILHR 71 Query: 62 ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +LEK R R PR LIL PTRELAAQV ++ E YGK L ++ GG+ Q + L Sbjct: 72 LLEKQAPRRPRRPRCLILAPTRELAAQVLESVEGYGKYVPLKATVMFGGVGLNPQVRALA 131 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR+LDH + + ++ +EI V+DEADRMLDMGFI I+ I L+P RQ Sbjct: 132 AGVDILVATPGRLLDHCGQNTVDLSAVEIFVLDEADRMLDMGFIRDIRRILGLLPKQRQN 191 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT +DE++ +++ L NP +EV ++ ++ ++ V AQ K+ LL L++ Sbjct: 192 MLFSATFSDEIRTLADGLLNNPGYVEVARRNAASDLVDQT-VHLVAQEHKRD-LLTHLIR 249 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F K L L + G AIHGN Q +R + L++FK+GT+ ++V Sbjct: 250 RHD-WRQVLVFTRTKHGANRLAEKLAEDGIPAAAIHGNKSQSARTRALADFKDGTVPVLV 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAGR G A +LVAKE++K + +I Sbjct: 309 ATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGRAGSAVSLVAKEELKLLGSI 368 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 E+LI++ + G + NPP Sbjct: 369 ERLIKRPIQ--RGTVEGFNPP 387 >gi|255533359|ref|YP_003093731.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346343|gb|ACU05669.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM 2366] Length = 437 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 161/367 (43%), Positives = 232/367 (63%), Gaps = 6/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY +PTPIQ + IP +LQ D+ G AQTGTGKTA+F +PML Sbjct: 1 MLFKELNLIEPILNALQTEGYTQPTPIQEQAIPSILQNRDLLGCAQTGTGKTAAFAIPML 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L K ++ + L+L PTRELA Q+ ++F+ YGKN + ++ GG+ +AQ Sbjct: 61 QLLSKPHTNTKIHKVIKALVLTPTRELAIQIEESFKAYGKNLPIRHLVIFGGVGQKAQTD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+L+ TPGR+LD N+G + + +IEI V+DEADRMLDMGFI ++ + + +P Sbjct: 121 ALHRGVDILVATPGRLLDLMNQGFINLRDIEIFVLDEADRMLDMGFIHDVKKVIAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL FSATM E+Q +++ L NP ++EV SSTAE I Y + K LL Sbjct: 181 RQTLFFSATMPKEIQGLADTILTNPVKVEVTPVSSTAEKIRQEIF--YVEKGDKKGLLMH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +LQ + T++ ++F K + L K G AIHGN Q +R + L+NFK T + Sbjct: 239 ILQDK-TIETALVFARTKHGADRIVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HV N+++PN E Y+HRIGRTGRAG G A + E+ + + Sbjct: 298 ILVATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGLSGTALSFCDAEEKEFL 357 Query: 358 DAIEKLI 364 D IEKLI Sbjct: 358 DDIEKLI 364 >gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P] gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P] Length = 432 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 163/369 (44%), Positives = 232/369 (62%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGLSP +V AV + GY KP+PIQ K IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L E + R R L+L PTRELAAQV DN +Y K ++ ++ GG+ + Q L Sbjct: 61 QYLVETKHPKYRPLRALVLTPTRELAAQVHDNVREYSKYVDIKSTVVFGGVNAKPQIATL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD ++ L +E+L++DEADRMLDMGF+ I I S +P RQ Sbjct: 121 RSGVDILVATPGRLLDLHDQKALSFKRVEVLILDEADRMLDMGFVRDINKIISFMPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +++++K++ L++P +E +STA+ + H +KK +L+ Sbjct: 181 NLMFSATFSNDIKKLASGILRDPVSVETAPQNSTAKKVTHKVYKV--DKNKKTEFTIKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L L K S AIHGN Q +R K L NFK+G+I+++ Sbjct: 239 K-EGNWNQVLVFTRTKHGANKLTEKLIKADISAAAIHGNKSQGARTKALKNFKDGSIKIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP + HV NF++PN E+Y+HRIGRTGRAG G+A +LV E+ ++ Sbjct: 298 VATDIAARGLDIPLLPHVVNFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEESEYQSE 357 Query: 360 IEKLIEKKV 368 IEKL+ +K+ Sbjct: 358 IEKLLNEKL 366 >gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1] gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1] Length = 438 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 171/411 (41%), Positives = 250/411 (60%), Gaps = 12/411 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ GY P+PIQ K IPLVL+R DV AQTGTGKTA F LPML Sbjct: 1 MSFKSLGLSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPML 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L ++ R R R LIL PTRELAAQV N ++Y ++ ++ GG+ Q L Sbjct: 61 QLLSQQPPLRKRPIRALILTPTRELAAQVYANVKEYSTFLDIRSTVIFGGVNARPQIATL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD ++ L + +E+LV+DEADRMLDMGF+ I+ + LVP RQ Sbjct: 121 RNGVDILVATPGRLLDLHSQKALSLAKVEMLVLDEADRMLDMGFLRDIKRVIELVPKRRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + +++K++++ L +P +E ++TAE + +K LL +L+ Sbjct: 181 NLLFSATFSKDIKKLAQSILHHPVSVEATPENTTAEKVNQKVYKV--DKPRKTELLIKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ ++F K L L + S AIHGN Q +R K L FK+GTI+++ Sbjct: 239 -SEGNWSQVLVFTRTKHGANRLTKKLIAKHISAAAIHGNKTQNARTKALDGFKKGTIRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP + HV NF++PN E+Y+HRIGRTGRAG G+A +LV+ E+ +++ Sbjct: 298 VATDIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLVSAEEYEYVRG 357 Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 IEKL+++K ++ D + PP ++ +K+N P+ ++G Sbjct: 358 IEKLLDEKLHSEEIEGFEADPNYTPPPKQQ---RPQRSRKKSNSSPRGNSG 405 >gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17] gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17] Length = 459 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/371 (44%), Positives = 234/371 (63%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ +V A+ GY +PTPIQ +IP +L+ D+ GIAQTGTGKTA+FVLP + Sbjct: 1 MSFSELGLAEPLVRALEAKGYSEPTPIQRDSIPTLLEGRDLLGIAQTGTGKTAAFVLPSI 60 Query: 61 TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + RV +P R L+L PTRELA+Q+ADN + Y K L VA + GG + Sbjct: 61 QRLVEANKRV-LPTHCRMLVLAPTRELASQIADNAKGYAKFSKLAVATVFGGTSINKNRQ 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+L+ TPGR++D +G L ++ IEILV+DEAD+MLD+GFI ++ I ++P Sbjct: 120 DLSRGVDILVATPGRLIDLVEQGFLNLSMIEILVLDEADQMLDLGFIHALRRIVKMIPRK 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL FSATM ++ +++ FL NP + V S+TAE +E T+ +K ALL Sbjct: 180 RQTLFFSATMPAAIRDLADKFLDNPATVSVTPVSTTAERVEQSV--TFVTQQEKQALLTI 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + ++ ++F K + L G + AIHGN Q R + L F+ G + Sbjct: 238 LL-ADPAIELALVFTRTKHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFRSGQTR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DIP V HVFNF++PN AE Y+HRIGRT RAGR G A A+++ ++ Sbjct: 297 VLVATDIAARGIDIPGVSHVFNFELPNVAEQYVHRIGRTARAGRSGLAIAFCAEDERPYL 356 Query: 358 DAIEKLIEKKV 368 IEKL +K+ Sbjct: 357 KDIEKLTRQKI 367 >gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 177/433 (40%), Positives = 250/433 (57%), Gaps = 12/433 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GLSP ++ A+ + GYV PTPIQ + IP+VLQ DV G AQTGTGKTA F LP++ Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + P R LIL PTRELA QVADN Y + L ++ GG+ Q Sbjct: 78 LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G +++I TPGR+LDH + + ++ +ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT + E++K++ +F NP IEV ++TAE + Y A Sbjct: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTI---YKVEEAAKADAVS 254 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + Q +K I+F N K L +L +G AIHG+ Q RM L FK+G I+ Sbjct: 255 FIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIE 314 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+D+P AE+Y+HRIGRTGRAG G A +L +D + + Sbjct: 315 VLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLL 374 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPL--EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 IEKLI+KK + +L+ P E+ D A+ + + DR +++ SS Sbjct: 375 TDIEKLIKKKFE--RAELTGFAPRARHERSDRAERGERSERGERSDRGDRSDRGERSRSS 432 Query: 416 QKSHIPLKESEKI 428 ++ EK+ Sbjct: 433 REGGAAPMRREKV 445 >gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44] gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44] Length = 464 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/360 (45%), Positives = 231/360 (64%), Gaps = 8/360 (2%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK----GRARV 70 AV D GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L L + + Sbjct: 8 AVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPA 67 Query: 71 RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129 R P R L+L PTRELA QVA Y K+ L ++ GG+ + Q +L++G +VL+ T Sbjct: 68 RHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVAT 127 Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189 PGR+LDH +++N +E +V+DEADRMLD+GF+P +Q I S +P +R TLLFSAT + Sbjct: 128 PGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSATFSP 187 Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249 E+++++ ++LQ+P IEV P+ TA T+E F K+ A ++ +L+ +D ++ Sbjct: 188 EIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKV-TDDDKRYA-IRSVLKERD-IRQAF 244 Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309 IF N K L +LE+ G A+HG+ Q R+K L FK G + L+V +D+AARGL Sbjct: 245 IFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARGL 304 Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 DI DV VFN+DVP AE+Y+HRIGRTGRAG G A TLV D +++ IEKL +KK++ Sbjct: 305 DIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKKIE 364 >gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3] gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3] Length = 426 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 164/367 (44%), Positives = 237/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL +++ AV + GY KP+PIQ + IP++L DV AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG RA+ R LIL PTRELAAQ+ ++ YG+N L A++ GG+ Q + L Sbjct: 61 ANLMKGERAKANQVRVLILTPTRELAAQIHESVCNYGQNLPLRSAVVFGGVKINPQMQLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DVL+ TPGR+LD + + + +E+LV+DEADRMLDMGFI I+ I +P RQ Sbjct: 121 RRGVDVLVATPGRLLDLYQQNAVRFKQLEVLVLDEADRMLDMGFIHDIKRIIKFLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +++++K+++ + +P I V+ ++TAE++ +KK LL L+ Sbjct: 181 NLLFSATFSNDIRKLAKGLVNDPVEISVSPRNTTAESVTQFIYEV--DKTKKSPLLSTLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ K ++F K L LE +G AIHGN Q +R + L++FKEG I ++ Sbjct: 239 K-ENKWKQVLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASFKEGKITVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+P+ +E+Y+HRIGRTGRAG G+A +LV +++ K + Sbjct: 298 VATDIAARGIDIDQLEQVVNFDLPHVSEDYVHRIGRTGRAGNKGEAISLVCEDEFKLLKD 357 Query: 360 IEKLIEK 366 IEKLI+K Sbjct: 358 IEKLIKK 364 >gi|90425187|ref|YP_533557.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] gi|90107201|gb|ABD89238.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] Length = 481 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 162/364 (44%), Positives = 228/364 (62%), Gaps = 5/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+ + A+ + Y+ PTPIQ +TIPL + DV GIAQTGTGKTASF LP++ Sbjct: 10 FQDFGLAEAITRALKEENYLTPTPIQAQTIPLAMAGRDVVGIAQTGTGKTASFALPIIHR 69 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R + + R L+L PTREL+ Q+ ++F YG++ LT AL IGG+P Q + + Sbjct: 70 LLENRIKPQPKTCRVLVLSPTRELSGQILESFNAYGRHVRLTSALAIGGVPMGRQVRSIM 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR+LD L +N +E LV+DEADRMLDMGFI I+ I + +P RQT Sbjct: 130 PGLDVLVATPGRLLDLVQTNALKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ +++ L++P R+ V +ST E I + +S K LL Q+L+ Sbjct: 190 LFFSATMPKDIADLADQMLRDPARVAVTPVASTVERITQRII--QVDHSAKPTLLAQILK 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ + +IF K + L + G + AIHGN Q R ++L+ F+ G I+ +V Sbjct: 248 -QENVNRALIFTRTKHGADKVVKGLARAGITADAIHGNKSQNHRERVLAAFRAGEIRTLV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV NFD+PN E Y+HRIGRT RAG G A +LVA E++ + I Sbjct: 307 ATDIAARGIDVDGITHVVNFDLPNIPETYVHRIGRTARAGAEGIAISLVAGEEMAFLRDI 366 Query: 361 EKLI 364 EKLI Sbjct: 367 EKLI 370 >gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018] gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018] Length = 435 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 163/385 (42%), Positives = 251/385 (65%), Gaps = 5/385 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL +++ A+ + GY PTPIQ K+IP++L + DV AQTGTGKTA F LP+L Sbjct: 1 MSFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ + + R LIL PTRELAAQVA + E YGK A++ GG+ Q Sbjct: 61 QRLKDSNFKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKAL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G D++I TPGR+LD ++ L ++ IE LV+DEADRMLDMGFI I+ I +++P R Sbjct: 121 LKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT ++E++K+++ L++P +EV+ +S + +E V + +K LL L Sbjct: 181 QNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQ--VVHHVDKDRKKELLLHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++++ + ++F K L +L K + AIHGN Q +R K L +FK G +++ Sbjct: 239 V-NKNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NF++PN AE+Y+HRIGRTGRAG +G A +LV ++ +++ Sbjct: 298 LVATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLF 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383 IEKLI++K+ + + +NP ++ Sbjct: 358 GIEKLIKQKIKKVEINGFKVNPNIK 382 >gi|218678974|ref|ZP_03526871.1| DEAD/DEAH box helicase domain protein [Rhizobium etli CIAT 894] Length = 195 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 149/192 (77%), Positives = 167/192 (86%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS KV+ AV DAGY PTPIQ IP L+R D+CGIAQTGTGKTASFVLPML++ Sbjct: 4 FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG Sbjct: 64 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I ++PFTRQTL Sbjct: 124 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 183 Query: 183 FSATMTDELQKV 194 FSATM E+QK+ Sbjct: 184 FSATMPPEIQKL 195 >gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22] gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22] Length = 435 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 171/429 (39%), Positives = 267/429 (62%), Gaps = 7/429 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL +++ A+ + GY PTPIQ K+IP++L + DV AQTGTGKTA F LP+L Sbjct: 1 MSFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ + + R LIL PTRELAAQVA + E YGK A++ GG+ Q Sbjct: 61 QRLKDSNLKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKAL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G D++I TPGR+LD ++ L ++ IE LV+DEADRMLDMGFI I+ I +++P R Sbjct: 121 LKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT ++E++K+++ L++P +EV+ +S + +E V + +K LL L Sbjct: 181 QNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQ--VVHHVDKDRKKELLLHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++++ + ++F K L +L K + AIHGN Q +R K L +FK G +++ Sbjct: 239 V-NKNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NF++PN AE+Y+HRIGRTGRAG +G A +LV ++ +++ Sbjct: 298 LVATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLF 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 IE+LI++K+ + + +NP ++ I N + + N + + KN +S S Sbjct: 358 GIERLIKQKIKKVEINGFKVNPNIKAEPIG--NRSNRGNKANNSNQNRKVKPKNENSSSS 415 Query: 419 HIPLKESEK 427 P + + K Sbjct: 416 TKPRRFASK 424 >gi|313682743|ref|YP_004060481.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM 16994] gi|313155603|gb|ADR34281.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM 16994] Length = 431 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 161/371 (43%), Positives = 237/371 (63%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ ++ A+ D GY PTP+Q + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFTDLQLNDSLLKAINDQGYTTPTPVQAQAIPFILEGRDMLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL K R R LIL PTRELAAQV ++ + YGK L A++ GG+ Q Sbjct: 61 QILSDRKQPKTHRKIRALILTPTRELAAQVGESVKLYGKYLPLKSAVIFGGVGINPQITM 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+LI TPGR+LDH +G + ++ +EI V+DEADRMLDMGFI I+ + +++P R Sbjct: 121 LRNGVDILIATPGRLLDHVGQGTVDLSGVEIFVLDEADRMLDMGFIRDIRRVITILPKVR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +D+++ ++ L+NP +EV ++++E ++ + +K +LL +L Sbjct: 181 QNLLFSATYSDDIKTLANTLLRNPAEVEVARRNTSSELVKQSVI--LVDCKRKSSLLGEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F K L L+K G + AIHGN Q +R K L +FK ++++ Sbjct: 239 I-GKHKWEQVLVFTRTKHGANKLTEYLQKIGITAAAIHGNKSQSARTKALDDFKRSSVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NF++PN AE+Y+HRIGRTGRAG G+A +LV ++ ++ Sbjct: 298 LVATDIAARGIDIDALPHVVNFELPNIAEDYVHRIGRTGRAGCEGEALSLVCVDEADYLR 357 Query: 359 AIEKLIEKKVD 369 IEKLI KK+D Sbjct: 358 GIEKLINKKLD 368 >gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 526 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 163/368 (44%), Positives = 234/368 (63%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL LS KV+ A+ D G+ +P+PIQ + IP +LQ DV G AQTGTGKTA+F +P++ Sbjct: 6 LTFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIV 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L G+ R + L+L PTRELA QVA+ K G++ + + GG E Q + L Sbjct: 66 ERLVPGQ---RAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIRSLR 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV+I TPGRILDH R L ++ + ++V+DEAD MLDMGFI I+ I P RQT Sbjct: 123 FGVDVVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+++++ ++++P I V T I+ F + K L ++L Sbjct: 183 LLFSATMPPEIRRLAGRYMRDPITISVTPQQLTVPQIDQYFCEVRPSF--KTEALTRILD 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++ GI FC KK V L +L+ +G+ IHG+++Q R +++S FKEG I+L+V Sbjct: 241 IEN-VERGICFCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI DV HVFN+D+P E+Y+HRIGRTGRAGR G A TLV + + I Sbjct: 300 ATDVAARGLDISDVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQLRLI 359 Query: 361 EKLIEKKV 368 E++I+ ++ Sbjct: 360 ERVIKARL 367 >gi|254457659|ref|ZP_05071087.1| putative helicase [Campylobacterales bacterium GD 1] gi|207086451|gb|EDZ63735.1| putative helicase [Campylobacterales bacterium GD 1] Length = 423 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 159/370 (42%), Positives = 241/370 (65%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY +PTPIQ + IP++L R D+ AQTGTGKTA F LPML Sbjct: 1 MSFNTLGLSAPLLKAIKEQGYTEPTPIQKQAIPVILNRKDILAGAQTGTGKTAGFTLPML 60 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + + + LIL PTRELAAQVA++ E YGK+ ++ GG+ Q + Sbjct: 61 ELLSRAKHTSGKHHVKALILTPTRELAAQVAESVEVYGKHLPFKSCVIFGGVKINPQIVQ 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D++I TPGR+LDH ++ + ++ ++ L++DEADRMLDMGFI I+ I ++P R Sbjct: 121 LRKGIDIVIATPGRLLDHISQKTIDLSKVDFLILDEADRMLDMGFINDIRKILEILPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +DE++K+S+ L +P IEV ++ +ET++ + +K LL L Sbjct: 181 QNLLFSATYSDEIKKLSDRLLNSPTLIEVARRNTASETVKQAVYPVDKE--RKRELLTHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + K ++F K L LEK G + AIHGN Q +R K L++FK+ +++ Sbjct: 239 I-NDGKWKQVLVFTRTKHGANRLSDQLEKDGITSAAIHGNKSQNARTKALADFKKSEVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV N+++PN +E+Y+HRIGRTGRAG G+A +LV ++++++ Sbjct: 298 LVATDIAARGIDIDQLPHVVNYELPNVSEDYVHRIGRTGRAGNEGEAISLVCVDELEYLA 357 Query: 359 AIEKLIEKKV 368 IEKLI K + Sbjct: 358 NIEKLINKDI 367 >gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099] gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099] Length = 467 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 166/396 (41%), Positives = 248/396 (62%), Gaps = 13/396 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA LG++ ++ A +AG+ +P PIQ++ IP L+ D+ GIAQTG+GKTA+F LP+L+ Sbjct: 12 FAALGITGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSK 71 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ D + K +++ AL++GG+ +Q KK+ Sbjct: 72 IIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVA 131 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+ D G L++++ + LV+DE DRMLDMGFI ++ I RQT Sbjct: 132 PGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQT 191 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM DE+ ++++ L+NP RIEV+ S+ A I V +A+ +K +L +L Sbjct: 192 ALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQGVV--FARTKQKRQVLSTML- 248 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + MK+ IIF K + LE+ GF IHGN Q +R K L++F+EG+++++V Sbjct: 249 ADEAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFREGSVRILV 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G G A TL + + + Sbjct: 309 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQV 368 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396 E++I K+ + L S +P Q N A KN Sbjct: 369 ERIIRTKLPIVADHLGSPDP--------QRNPAEKN 396 >gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] Length = 494 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 167/374 (44%), Positives = 243/374 (64%), Gaps = 10/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGL P++ AV DAGY +PTPIQ + IP+V+ +DV G AQTGTGKTA F LP+L Sbjct: 1 MSFADLGLIPELQRAVADAGYTEPTPIQRQAIPIVIAGNDVMGGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + P R LIL PTRELA QV ++ + Y K+ L + GG+ Q Sbjct: 61 HRLARHANTSTSPARHQTRALILAPTRELAMQVYESVKTYSKHLPLRATCIYGGVDMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++L RG +++I TPGR+LDH + + + +E+LV+DEADRMLDMGFIP I+ I +L+P Sbjct: 121 IQELRRGIEIVIATPGRLLDHVQQKTINLTQVEMLVLDEADRMLDMGFIPDIKRILALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +RQ+LLFSAT +DE++K+++ L+NP+ IEV + +ETI H + + LL Sbjct: 181 ASRQSLLFSATFSDEIKKLADQMLKNPQLIEVARRNMVSETITHRVHPVSSGMKRN--LL 238 Query: 236 QQLLQSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LL+ Q DT ++F + K L H LE+ S +IHG+ Q+ R + L FK G Sbjct: 239 AHLLRHQPDT--QALVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKAG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++++VA+D+AARG+DI ++ +V N+++P+ AE+Y+HRIGRTGRAG G A +LV E+ Sbjct: 297 KLRVLVATDVAARGIDIDELPYVINYELPHTAEDYVHRIGRTGRAGHQGNAVSLVCTEEK 356 Query: 355 KHIDAIEKLIEKKV 368 + I+KLI+ ++ Sbjct: 357 HLLADIQKLIKLEI 370 >gi|86132795|ref|ZP_01051387.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] Length = 425 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 163/370 (44%), Positives = 237/370 (64%), Gaps = 6/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ K IP VL+ DV AQTGTGKTA F LPML Sbjct: 1 MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPML 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++ R R R L+L PTRELAAQ+ DN +Y K ++ ++ GG+ Q + + Sbjct: 61 HNLIANPRQGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTI 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD N+G L +++IE LV+DEADRMLDMGFI I+ + LVP RQ Sbjct: 121 RQGVDILVATPGRLLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQL 238 LLFSAT +++K++ + L NP +E ++TAE ++ TY S+K +L + Sbjct: 181 NLLFSATFNKDIKKLASSILTNPVLVEATPENTTAEKVDQ---KTYRVDKSRKTEMLIKF 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ ++F K L L+K G + AIHGN Q +R+K L+ FK G I++ Sbjct: 238 I-NEGNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRV 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP + +V N+++PN E+Y+HRIGRTGRAG G+A +LV +++ ++ Sbjct: 297 LVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVR 356 Query: 359 AIEKLIEKKV 368 IEKL+ +K+ Sbjct: 357 GIEKLLGEKL 366 >gi|116054159|ref|YP_788602.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14] gi|313111948|ref|ZP_07797737.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas aeruginosa 39016] gi|115589380|gb|ABJ15395.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas aeruginosa UCBPP-PA14] gi|310884239|gb|EFQ42833.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas aeruginosa 39016] Length = 639 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 174/424 (41%), Positives = 253/424 (59%), Gaps = 16/424 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R R L+L PTRELAAQV D+F+ Y ++ L + GG+ Sbjct: 61 ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L +G DVL+ PGR+LD + K+ ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A +K A Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 K + AIEK+ +++ +GD +P ++AQ + PQK D+ +++ Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSS 411 Query: 414 SSQK 417 +K Sbjct: 412 RERK 415 >gi|15595625|ref|NP_249119.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] gi|9946285|gb|AAG03817.1|AE004480_1 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] Length = 639 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 174/424 (41%), Positives = 253/424 (59%), Gaps = 16/424 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R R L+L PTRELAAQV D+F+ Y ++ L + GG+ Sbjct: 61 ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L +G DVL+ PGR+LD + K+ ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A +K A Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 K + AIEK+ +++ +GD +P ++AQ + PQK D+ +++ Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSS 411 Query: 414 SSQK 417 +K Sbjct: 412 RERK 415 >gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001] gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001] Length = 488 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 162/390 (41%), Positives = 242/390 (62%), Gaps = 12/390 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+DL L+P ++ A+ + GY PTPIQ ++IP +LQ D+ G+AQTGTGKTASF LP+L Sbjct: 52 FSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEH 111 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ RA + PR L+L PTREL AQ++D+F+ Y ++ T A++ GG+ Q + + Sbjct: 112 LIKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMR 171 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVL+ PGR+LD +G + ++ +EILV+DEADRMLDMGF+ I+ I + VP RQT Sbjct: 172 RGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQT 231 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ ++ + L +P R+EV PSST + I+ + K+ ALL + Sbjct: 232 LLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNMV-- 289 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++F K + L K AIHGN Q +R + + F+ G+++++V Sbjct: 290 ESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVLV 349 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HVFN+D+PN E+Y+HRIGRT RAGR G A + E + I Sbjct: 350 ATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFCDAEQRAWLRDI 409 Query: 361 EKLIEKKV------DWLN--GDLSSLNPPL 382 E+ I K V W + + S++ PP+ Sbjct: 410 ERTIGKTVPVVRDHPWHSDEAEASTMRPPV 439 >gi|254431629|ref|ZP_05045332.1| DNA and RNA helicase [Cyanobium sp. PCC 7001] gi|197626082|gb|EDY38641.1| DNA and RNA helicase [Cyanobium sp. PCC 7001] Length = 437 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 164/363 (45%), Positives = 228/363 (62%), Gaps = 4/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++ AV + GY P+PIQ++ IP VL HDV AQTGTGKTA F LPML Sbjct: 5 FAALGLGLPILKAVAEKGYTTPSPIQLECIPTVLAGHDVMAAAQTGTGKTAGFTLPMLER 64 Query: 63 LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G AR + R L+L PTRELAAQVA+N YG+ +L ++ GG+ Q +L Sbjct: 65 LRHGPHARGGVVRALVLTPTRELAAQVAENVAAYGRYLDLRSDVVFGGVKINPQINRLRA 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GAD+L+ TPGR+LD + + ++ +E+LV+DEADRMLDMGFI IQ + +L+P RQ L Sbjct: 125 GADILVATPGRLLDLQQQRAIRLDRVEVLVLDEADRMLDMGFIRDIQKLLALLPPKRQNL 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + ++K++ L P +++ + A T+EH ++K LL L+ S Sbjct: 185 LFSATFSPSIRKLAHGLLHQPVQLQATPENQAAPTVEHLL--HPCDMARKPELLTHLIAS 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + ++F K + L G AIHGN Q +R + L+ FK G ++++VA Sbjct: 243 ND-WQQVLVFSRTKHGANRMADRLCAAGLEAAAIHGNKSQGARTRALAGFKTGEVRVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +DLAARG+DI + HV N D+PN+AE+Y+HRIGRTGRAG G A +LVA E+ + + AIE Sbjct: 302 TDLAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHPGHAISLVAAEEHELLGAIE 361 Query: 362 KLI 364 +LI Sbjct: 362 RLI 364 >gi|237793963|ref|YP_002861515.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str. 657] gi|229261675|gb|ACQ52708.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str. 657] Length = 425 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 165/371 (44%), Positives = 240/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ + GY K TPIQ K+IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + + PR L+L PTRELA Q+A++FE YGK NL ++ GG+ Q K Sbjct: 61 QNLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSVVIFGGVSQNPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD FN+ + + NIE V+DEADRMLDMG I ++ I S +P Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKI 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E+ K+ ++ +++P R+EV SST +TI + + +K ALL+ Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRALLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++++ ++F K+ + L + G AIHGN Q +R + L+NFKEG I+ Sbjct: 239 LLKDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HVFN+++P+ E Y+HRIGRTGRAG G A + E+ K + Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357 Query: 358 DAIEKLIEKKV 368 AIEKLI K++ Sbjct: 358 KAIEKLINKEI 368 >gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163] gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163] Length = 458 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 169/375 (45%), Positives = 238/375 (63%), Gaps = 6/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F DL LSP ++ A+ + GYV P+PIQ K IP VL DV G AQTGTGKTA+F LP++ Sbjct: 13 MNFKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPII 72 Query: 61 TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + R+ R+LIL PTR+LA Q+A+NF++YG ++ A++ GG+ Q + Sbjct: 73 QNLMKPSEKKYSKRVIRSLILTPTRKLALQIAENFKEYGSRTSVRCAVIFGGVSANPQIE 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG D+L+ TPGR+ D +G + + +EI V+DEADRMLDMGFI ++ I SL+P Sbjct: 133 ELRRGIDILVATPGRLNDLVGQGFVDLAYVEIFVLDEADRMLDMGFIHDVKKIISLLPVR 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSATM E+Q +++ L NP R+EV SST + I+ Y K +LL Sbjct: 193 KQTLLFSATMPAEIQALTDKLLHNPARVEVTPVSSTVDIIDASLY--YVDKENKRSLLVY 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL +D + + ++F K + L K S AIHG+ Q +R LS+FK G IQ Sbjct: 251 LLNHED-ITSTLVFTRTKHGADRVAKFLVKNRISAAAIHGDKSQGARQTALSHFKSGEIQ 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ V NFD+PN E YIHRIGRTGRAG G+A + E+ ++ Sbjct: 310 VLVATDIAARGIDIEELSCVINFDLPNIPETYIHRIGRTGRAGLDGRAISFSDIEEKAYV 369 Query: 358 DAIEKLIEKKVDWLN 372 IEKL K + ++ Sbjct: 370 KDIEKLTGKAIPVVD 384 >gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74] gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74] Length = 485 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 158/376 (42%), Positives = 240/376 (63%), Gaps = 7/376 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L ++ A+ + GY PTPIQ K IP++L R D+ G AQTGTGKTA+F +P+L Sbjct: 1 MQFSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L + R++ R +TLIL PTRELA Q+A++F YG++ N+ ++ GG+ +Q Sbjct: 61 QLLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQV 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+ G DVLI TPGR+LD N+G + + +++ V+DEADRMLDMGFI ++ + + +P Sbjct: 121 NTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPT 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ+L FSATM ++ K+++ L NP ++EV SSTA+TIE + K LL Sbjct: 181 HRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMY--FVGKEDKRKLLV 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L ++ +K+ ++F K + L K G AIHGN Q +R + LSNFK Sbjct: 239 HILDDKN-IKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRET 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARG+D+ ++ HV N+++PN E Y+HRIGRTGRAG G A + E+ ++ Sbjct: 298 RVLVATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEY 357 Query: 357 IDAIEKLIEKKVDWLN 372 + I KLI K+V ++ Sbjct: 358 LRDIHKLIGKRVPVID 373 >gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088] gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088] Length = 412 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 159/375 (42%), Positives = 242/375 (64%), Gaps = 5/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+DLGLSPK++ A+ D GY PT IQ I VLQ D+ AQTGTGKTA+F LP+L Sbjct: 1 MNFSDLGLSPKLLQAISDTGYTTPTAIQSAAIGPVLQGKDLMASAQTGTGKTAAFTLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + P+ LI+ PTRELAAQ+ + + Y K + + GG+ Q ++L+ Sbjct: 61 ETLLRKPNSSKSPKFLIITPTRELAAQIEASAQTYSKYISCRTLAVFGGVKIGPQIRQLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR+LD +G++ + I++LV+DEADRMLDMGFIP I+ I L+P T+QT Sbjct: 121 QGVDVLIATPGRLLDLSEQGEVDLKMIDVLVLDEADRMLDMGFIPAIRRIQKLLPATKQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSAT +DE++ +++ +L+ P + V ++ A T++ +K A+LQ LL Sbjct: 181 LMFSATYSDEIRTLAQTYLRRPVEVSVTPKNAAAHTVDQLIYPV--DKKQKSAVLQYLLN 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ ++F K L L+K AIHGN Q R K L++FK G I ++V Sbjct: 239 NYGWVQV-LVFSRTKHGANKLVRELDKANIRAAAIHGNRSQSQRTKALADFKSGKIAVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RG+DI + V NFD+PN E+Y+HRIGRTGRAG +G+A +LV +++K + I Sbjct: 298 ATDIASRGIDIAQLPVVINFDLPNVPEDYVHRIGRTGRAGSNGRAISLVCADEVKQLRDI 357 Query: 361 EKLIEKKV--DWLNG 373 E++I +++ ++++G Sbjct: 358 ERVISRQLPREFIDG 372 >gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] Length = 438 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 165/369 (44%), Positives = 227/369 (61%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS V AV + GY KP+PIQ K IP +L+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L E + R R L+L PTRELAAQV DN +Y K N+ A++ GG+ +Q L Sbjct: 61 QYLSETKHPKYRPIRALVLTPTRELAAQVHDNVREYSKYVNIKSAVVFGGVKAASQIATL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG D+L+ TPGR+LD ++ + I++ ++DEADRMLDMGF+ I I S +P RQ Sbjct: 121 KRGVDILVATPGRLLDLHDQKAVSFKRIDVFILDEADRMLDMGFVRDINKIISYMPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT + E++K++ L+NP +E +STA+ + H Y KK L Sbjct: 181 NLMFSATFSKEIKKLASGILKNPVEVETAPQNSTAKKVSH---KVYQIDKKKKTEFTIKL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +IF K L +L K S AIHGN Q +R K L NFK+ TI+++ Sbjct: 238 IKDNNWNQVLIFTRTKHGANRLTQNLIKSKISAAAIHGNKSQGARTKALKNFKDNTIKVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP + +V N+++PN E+Y+HRIGRTGRAG G+A +LV E+ ++ Sbjct: 298 VATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGAKGEAISLVCSEETEYQKE 357 Query: 360 IEKLIEKKV 368 IEKL+ +K+ Sbjct: 358 IEKLLNEKL 366 >gi|296386927|ref|ZP_06876426.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1] Length = 639 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 174/424 (41%), Positives = 253/424 (59%), Gaps = 16/424 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R R L+L PTRELAAQV D+F+ Y ++ L + GG+ Sbjct: 61 ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L +G DVL+ PGR+LD + K+ ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A +K A Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 K + AIEK+ +++ +GD +P ++AQ + PQK D+ +++ Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSS 411 Query: 414 SSQK 417 +K Sbjct: 412 RERK 415 >gi|254243526|ref|ZP_04936848.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192] gi|126196904|gb|EAZ60967.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192] Length = 639 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 174/424 (41%), Positives = 253/424 (59%), Gaps = 16/424 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R R L+L PTRELAAQV D+F+ Y ++ L + GG+ Sbjct: 61 ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L +G DVL+ PGR+LD + K+ ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A +K A Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 K + AIEK+ +++ +GD +P ++AQ + PQK D+ +++ Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSS 411 Query: 414 SSQK 417 +K Sbjct: 412 RERK 415 >gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 427 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 239/372 (64%), Gaps = 10/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ K IP+VLQ DV AQTGTGKTA F LPM+ Sbjct: 1 MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMI 60 Query: 61 TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L ++GR ++R L+L PTRELAAQ+ +N +Y K ++ ++ GG+ Q Sbjct: 61 HRLINNPKQGRRKIR---ALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQV 117 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L +G D+L+ TPGR+LD N+G L ++++E LV+DEADRMLDMGFI I+ + +VP Sbjct: 118 RTLRQGVDILVATPGRLLDLQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPA 177 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +++K + + L NP +E ++TAE ++ + S+K +L Sbjct: 178 KRQNLLFSATFNTDIKKFASSILTNPVLVEATPENTTAEKVDQK--SYRVDKSRKTEMLI 235 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + ++ + ++F K L LEK G S AIHGN Q +R+K L+ FK G + Sbjct: 236 KFIR-EGNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKV 294 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDIP + +V N+++PN E+Y+HRIGRTGRAG G+A +LV +++ + Sbjct: 295 RVLVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDY 354 Query: 357 IDAIEKLIEKKV 368 + IEKL+ +K+ Sbjct: 355 VRGIEKLLGEKL 366 >gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 429 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 170/406 (41%), Positives = 248/406 (61%), Gaps = 14/406 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + L P V V AGY +PTPIQ + IP LQ D+ G+AQTGTGKT +FVLPML Sbjct: 1 MTFENFDLHPAVRDGVKSAGYTEPTPIQAQAIPPALQGRDLIGLAQTGTGKTTAFVLPML 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R ++R LI+ PTRELA Q+ D+ + ++ L + GG+ E Q KL Sbjct: 61 QRLLRGPRGKLR---GLIVSPTRELAEQIYDSVKTLSQHTGLRAMAIYGGVGMEPQKAKL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS-LVPFTR 178 G D++I PGR+LDH +G + +++E+LVIDEADRM DMGF+P I+ I LV R Sbjct: 118 RAGTDIVIACPGRLLDHVWQGTIDFDDVEMLVIDEADRMFDMGFLPDIRKILRCLVRPER 177 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM +++K+ + FL +P +++ T + A T+ H + K ALL+Q+ Sbjct: 178 QTLLFSATMPADVRKLVQEFLTDPVTVQIGT-VAPAVTVTHALYPV--RQDLKTALLKQI 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + + ++F K + +L + G++V +I GN+ Q R L FK+GT ++ Sbjct: 235 LRQIEDAGSVLVFTRTKHRTERVAIALRQAGYAVASIQGNLSQYRRQAALDGFKDGTFKV 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RG+D+ DV HV N+D+P+ A+ YIHRIGRTGR GR G AFT V ED + Sbjct: 295 LVATDIASRGIDVSDVSHVINYDMPDTADAYIHRIGRTGRIGRSGDAFTFVTPEDESMVR 354 Query: 359 AIEKLIEKKVD--WLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 A+EKL++ ++ + G D ++ PP + A R N P P+ Sbjct: 355 ALEKLLKTTIERRTVEGFDYNAPEPPPSRFSGAP---GRGNRPAPK 397 >gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum CFBP2957] gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum CFBP2957] Length = 495 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 166/373 (44%), Positives = 237/373 (63%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL P ++ A+ ++GY +PTPIQ IP+V+ DV G AQTGTGKTA F LP++ Sbjct: 17 FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 76 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QV DN KY K L A++ GG+ Q + Sbjct: 77 LLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++L+ TPGR+LDH + + ++ + +LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 137 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ ++L++P+ IEV ++TA+ + + T K+ AL+ Sbjct: 197 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQV-IYTVPDGHKQAALVHL 255 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q I+F N K L +LE++ + AIHG+ Q RM+ L FK+GT Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGT 315 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G A +L A D + Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 376 LLADIEKLIKRNL 388 >gi|207723759|ref|YP_002254157.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] Length = 495 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 166/373 (44%), Positives = 237/373 (63%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL P ++ A+ ++GY +PTPIQ IP+V+ DV G AQTGTGKTA F LP++ Sbjct: 17 FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 76 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QV DN KY K L A++ GG+ Q + Sbjct: 77 LLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++L+ TPGR+LDH + + ++ + +LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 137 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ ++L++P+ IEV ++TA+ + + T K+ AL+ Sbjct: 197 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQV-IYTVPDGHKQAALVHL 255 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q I+F N K L +LE++ + AIHG+ Q RM+ L FK+GT Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGT 315 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G A +L A D + Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 376 LLADIEKLIKRNL 388 >gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] Length = 441 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 160/371 (43%), Positives = 240/371 (64%), Gaps = 8/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLSP+++ A+ + GY +PTPIQ K IPLVL D+ AQTGTGKTA+F+LP+L Sbjct: 1 MLFSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL 60 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L+K P R L+L PTRELA Q+ N + Y K L + GG+ + Q Sbjct: 61 ERLKKFANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++L RG ++LI TPGR+LDH + + +N +E+LV+DE DRMLDMGFI I+ I ++P Sbjct: 121 TQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT E+++++ +F+ P+ +EV ++T + +E KK LL Sbjct: 181 KERQTLLFSATFAPEIKRLAADFMHAPQTVEVARQNATNDQVEQLVFQV--DNFKKRQLL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++S++ M I+FC K + L L++ G AIHG+ Q +R++ L+ FKEG Sbjct: 239 AHLIRSRE-MSQVIVFCKTKISADQLARDLKRDGLDAEAIHGDKTQGARLETLAGFKEGK 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGLDI ++ +V NF++P E+Y+HRIGRTGRAG G A +L+ ++ + Sbjct: 298 LRVLVATDVAARGLDISELPYVVNFELPTSPEDYVHRIGRTGRAGAKGIAISLMCPDESR 357 Query: 356 HIDAIEKLIEK 366 +AIEKL ++ Sbjct: 358 QHEAIEKLTKQ 368 >gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta ATCC 11568] gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta ATCC 11568] Length = 589 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 159/374 (42%), Positives = 234/374 (62%), Gaps = 5/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +GL+ ++ A+ GY KPTPIQ K IP V++ D+ GIAQTGTGKTA+F LP+L Sbjct: 4 ITFESMGLNKALLTALAATGYEKPTPIQAKAIPDVMKGKDLLGIAQTGTGKTAAFALPIL 63 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + R R R R LIL PTRELA Q+ D+F++YG + VA++ GG+ + AQ + Sbjct: 64 HRLAENRVAPRPRTTRALILSPTRELATQIGDSFKQYGAHLGFRVAVIFGGVKYGAQERA 123 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G DVL+ PGR+LDH + L ++ EI V+DEAD+MLD+GFI I+ I S +P R Sbjct: 124 LQQGLDVLVAAPGRLLDHIQQKTLDLSTCEIFVLDEADQMLDLGFIKPIRQIVSRIPAKR 183 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q L FSATM E+ K++ L++P +++V ++T E I+ + + + KK ALL +L Sbjct: 184 QNLFFSATMPSEIGKLAGELLKDPVKVQVTPQATTVERIKQSVI--WVEQGKKRALLTEL 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 S ++F K + LE G AIHGN Q R + L FK G +++ Sbjct: 242 F-SDPAYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRV 300 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ V HV NF++P E Y+HRIGRT RAG+ G A + VA +++K + Sbjct: 301 LVATDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAGDEMKLLK 360 Query: 359 AIEKLIEKKVDWLN 372 IEK+ +K+ ++ Sbjct: 361 DIEKVTRQKIPAID 374 >gi|153835022|ref|ZP_01987689.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01] gi|148868543|gb|EDL67640.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01] Length = 430 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 168/408 (41%), Positives = 250/408 (61%), Gaps = 15/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P+VV A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LPM+ Sbjct: 1 MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LE GR+ R R LI+ PTRELA Q+ADN + Y K +L+VA + GG +Q Sbjct: 61 QQLLESGRSASRKTARALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H +G + + NIE LV DEADR+LDMGFI ++ I V Sbjct: 121 LEGGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEADRILDMGFIHAVRKIMMDVDTDP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++++ L+ PKRIEV ++TA+TI H +K LL +L Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTIAHVLYPV--DQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + K ++F N K+ ++ L+ G HG+ Q +R + L FK G ++ Sbjct: 239 I-GRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398 +E LI++++ + +L+ P +EK++ ++ R+NNP Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403 >gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Alteromonadales bacterium TW-7] gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Alteromonadales bacterium TW-7] Length = 465 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 156/365 (42%), Positives = 233/365 (63%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AVL+ GY PTPIQ + IP +++R DV AQTGTGKTA F LP++ Sbjct: 1 MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G +A+ R LIL PTRELA QV++N E+Y K+ N++ ++ GG+ Q ++L Sbjct: 61 ERLSTGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR++D N+ + +++E+LV+DEADRMLDMGFI I+ + + +P RQ Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++ +++ + +P I V ++TA+++ A +K ALL L+ Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAV--DKGRKTALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +S D + ++F K L LE+ AIHGN Q +R+K L FK G ++++ Sbjct: 239 RSND-WQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLDI ++ HV N+D+PN E+Y+HRIGRTGRAG G A + V +D + Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357 Query: 360 IEKLI 364 IE+ I Sbjct: 358 IERFI 362 >gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062] gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062] Length = 483 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 169/398 (42%), Positives = 247/398 (62%), Gaps = 12/398 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F + GL+ ++ AV + GY PTPIQ + IPL+ + D+ GIAQTGTGKTA+FVLP+LT Sbjct: 3 NFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPLLT 62 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R + R LIL PTRELA+Q+A++ YG+ +VA++ GG+ Q + L Sbjct: 63 RLAEDRKKPAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVAVIFGGVKPGPQLRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D++I TPGR+ DH + G + ++ +V+DEAD+MLD+GF P I+ I +P RQ Sbjct: 123 SKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQMLDLGFAPAIRRILGKLPKVRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+L SATM +++ +++ FL NP I V S E I+ V SK+ ALL L Sbjct: 183 TVLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKIDQS-VRFLNSSSKRAALLDIL- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+D ++ I+F K+ + LEK G S AIHGN QR+R K L FK G I+++ Sbjct: 241 -SEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRIKIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI V HV N+++PN E Y+HRIGRT RAG+ G A +L + ++ Sbjct: 300 VATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLRD 359 Query: 360 IEKLIEKKV-----DW--LNGDLSSLNPPLEKIDIAQH 390 IE+LI +K+ DW +GD+S+ +P E + +H Sbjct: 360 IERLIGRKIPSGDSDWDGASGDVSTFDPTAEPQRLKRH 397 >gi|298207628|ref|YP_003715807.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559] gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559] Length = 424 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 177/426 (41%), Positives = 251/426 (58%), Gaps = 18/426 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL + ++ ++ + GY KPT IQ ++IPL+L+ DV G AQTGTGKT +F +P++ Sbjct: 1 MTFEDLNIISPILKSLDEQGYEKPTSIQARSIPLILKGEDVLGSAQTGTGKTGAFAIPII 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R +LI+ PTRELA Q+ +NF YGK +L ++ GG+P AQ Sbjct: 61 QHLANDLENAKGKRKILSLIVTPTRELAIQIGENFSAYGKYTSLKSTVIFGGVPQRAQTN 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+ G DVLI TPGR+LD ++G + + +++ V+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLKSGVDVLIATPGRLLDLMDQGYISLKDVKYFVLDEADRMLDMGFIHDIKKLLTKLPKN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ+L FSATM + +S L+NPK++EVN SSTAETI+ T + K LL Sbjct: 181 RQSLFFSATMPKNILTLSNQILKNPKKVEVNPVSSTAETIQQYLYTT--NKTNKGDLLLH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ + ++F K L K+ AIHGN Q R K L FK+G I+ Sbjct: 239 ILEDP-KIDQVLVFSKTKHGADRTVRKLLKKKIKSAAIHGNKSQNQRQKALKAFKDGNIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +MVA+D+AARG+DI + +V N+D+PN E Y+HRIGR GRAG G A ++ E+I+ I Sbjct: 298 VMVATDIAARGIDIDKLEYVINYDIPNEPETYVHRIGRCGRAGEDGIAISIGEPEEIQFI 357 Query: 358 DAIEKLIEKKVDWLNGD-LSSLNPPL----------EKIDIAQHNHA-RKNNPIPQKSTG 405 IEKLI++K+ + + + P+ EK I Q A RK N QK G Sbjct: 358 KDIEKLIKQKITVIKDNPFPQTDKPMTTSEKKAAEKEKQRIKQEFFANRKKNKGSQKGGG 417 Query: 406 FDRRKK 411 +RRKK Sbjct: 418 NNRRKK 423 >gi|209886522|ref|YP_002290379.1| putative ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5] gi|209874718|gb|ACI94514.1| putative ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5] Length = 512 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 164/364 (45%), Positives = 225/364 (61%), Gaps = 5/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+ + A+ + YV PTPIQ +TIP+ + DV GIAQTGTGKTASF LP+L Sbjct: 4 FQDFGLAETITRALSEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILHR 63 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R R + R L+L PTREL+ Q+ D+F YG++ L+ L IGG+P Q + L Sbjct: 64 LLENRVRPQPKTCRVLVLSPTRELSGQILDSFTAYGRHLRLSATLAIGGVPMGRQVRALM 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +VL+ TPGR+LD L + +E LV+DEADRMLDMGFI I+ I + +P RQT Sbjct: 124 GGVEVLVATPGRLLDLVQGNALKLGQVEFLVLDEADRMLDMGFIHDIRKIVAKLPHRRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ ++E+ L+ P R+ V SST E I + S K A L +LL+ Sbjct: 184 LFFSATMPKDIADLAEHMLREPARVAVTPVSSTVERIAQRII--QLDSSAKPATLSELLK 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + + ++F K + SL K G AIHGN Q R ++L+ F+ G I+ +V Sbjct: 242 S-EPVNRALVFTRTKHGADKVVRSLVKAGIPAEAIHGNKSQNHRERVLAAFRNGDIRTLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV NFD+PN E Y+HRIGRT RAG G A +LVA E+ ++ I Sbjct: 301 ATDIAARGIDVDGITHVVNFDLPNVPETYVHRIGRTARAGAEGTAISLVAGEENAYLRDI 360 Query: 361 EKLI 364 E+LI Sbjct: 361 ERLI 364 >gi|149199772|ref|ZP_01876803.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155] gi|149137177|gb|EDM25599.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155] Length = 437 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 240/370 (64%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL +++ + GY +PTPIQ + IP++L+ D+ AQTGTGKTA+F LP+L Sbjct: 1 MSFENLGLRTEILTGIKFQGYTQPTPIQEQAIPIILKGGDILAGAQTGTGKTAAFTLPIL 60 Query: 61 TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L R PR L+L PTRELAAQV ++ E YGK ++ ++ GG+ Q +KL Sbjct: 61 HLLSTADNRGGHRPRALVLTPTRELAAQVGESVELYGKGLDIRSTVIFGGVGINPQKQKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+++ TPGR+LD + L ++ IE L++DEADRMLDMGFI I+ I LVP RQ Sbjct: 121 RKGVDIVVGTPGRLLDLAGQKALDLSRIEYLILDEADRMLDMGFIHDIKKIIKLVPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSAT + +++ +SE+ L+NP +EV +++AET++ + +KK LL L+ Sbjct: 181 TLFFSATYSKDIKALSESILRNPSLVEVARQNTSAETVDQSVY--HVGKNKKRNLLSSLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L + L G + AIHGN Q +R + L++FK ++++ Sbjct: 239 RDGE-WNQVLVFTRTKHGANKLTNMLIADGITAAAIHGNKSQNARTRALADFKAIKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + HV N+++P AE+Y+HRIGRTGRAG G+A +LVAKE+ + A Sbjct: 298 VATDIAARGIDIDRLPHVVNYELPEIAEDYVHRIGRTGRAGCSGEAISLVAKEEASLLFA 357 Query: 360 IEKLIEKKVD 369 IEKLI KKV+ Sbjct: 358 IEKLINKKVN 367 >gi|168178014|ref|ZP_02612678.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916] gi|182671239|gb|EDT83213.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916] Length = 425 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 164/371 (44%), Positives = 240/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ + GY K TPIQ K+IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVL 60 Query: 61 TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K + + P R L+L PTRELA Q+ ++FE YGK NL A++ GG+ Q K Sbjct: 61 QNLSKDKKANKNPKPIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD FN+ + + NIE V+DEADRMLDMG I ++ I S +P Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKI 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E+ K+ ++ +++P R+EV SST +TI + + +K +LL+ Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVY--HVRKKQKRSLLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++++ ++F K+ + L + G AIHGN Q +R + L+NFKEG I+ Sbjct: 239 LLRDK-SIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HVFN+++P+ E Y+HRIGRTGRAG G A + E+ K + Sbjct: 298 VLVATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSL 357 Query: 358 DAIEKLIEKKV 368 AIEKLI K++ Sbjct: 358 KAIEKLINKEI 368 >gi|145298914|ref|YP_001141755.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp. salmonicida A449] gi|142851686|gb|ABO90007.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp. salmonicida A449] Length = 467 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 166/371 (44%), Positives = 237/371 (63%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL+ ++ AV + GY P+PIQ++ IP VL D+ AQTGTGKTA F LPML Sbjct: 1 MSFSSLGLAEPLLRAVAEQGYDTPSPIQLQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + +V R+ R L+L PTRELAAQV ++ YGK+ + ++ GG+ Q Sbjct: 61 QRLMESKRKVSPNRI-RALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMM 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 RG DVL+ PGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I +L+P Sbjct: 120 ATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRKILALMPKQ 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +E+++++ L NP IEV +STAE IE + + K LL Sbjct: 180 RQNLLFSATFAEEIRELATGLLNNPAVIEVAPRNSTAERIEQ--LVHPCDKANKIGLLSH 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ S D + ++F K + +L+K G S AIHGN Q +R + L+ FK+G ++ Sbjct: 238 LVTSND-WQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGNVK 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + V NF++PN AE+Y+HRIGRTGRAG G A +LVA ++ K I Sbjct: 297 VLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLI 356 Query: 358 DAIEKLIEKKV 368 AIE+L ++ + Sbjct: 357 KAIERLTKQNI 367 >gi|194337138|ref|YP_002018932.1| DEAD/DEAH box helicase domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309615|gb|ACF44315.1| DEAD/DEAH box helicase domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 418 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 234/370 (63%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L + ++ A+ + GY PTPIQ + IP++LQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MEFKSLEIIDPILQALQEEGYTTPTPIQAEAIPIILQGTDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + + R RTLI+ PTRELA Q+ ++F YG++ LT ++ GG+ Q Sbjct: 61 QLLSENKVYDKKRKIRTLIVTPTRELAIQIGESFNAYGRHTGLTNTVIFGGVNQNPQTAA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D++I TPGR+LD N+G L + ++EILV+DEADRMLDMGFI I+ I ++VP + Sbjct: 121 LIRGVDIVIATPGRLLDLLNQGFLSLRHVEILVLDEADRMLDMGFIHDIKKILAVVPKQK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+ K++ L NP ++ V SST E I + K +LL + Sbjct: 181 QSLFFSATMPAEIVKLAATILHNPSKVSVTPVSSTVEIINQSIY--FVDKGNKNSLLVDI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q +K ++F K + LEK AIHGN Q +R + L NFK T ++ Sbjct: 239 LRDQ-AIKTALVFTRTKHGADKVVKILEKHNIKAEAIHGNKAQNARQRALFNFKAQTTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ D+ +V NF++PN AE Y+HRIGRTGRAG G A + E+ +++ Sbjct: 298 LVATDIAARGIDVDDLEYVINFEMPNIAETYVHRIGRTGRAGAKGTALSFCDAEEKEYLR 357 Query: 359 AIEKLIEKKV 368 IEKLI KK+ Sbjct: 358 DIEKLIAKKI 367 >gi|114046738|ref|YP_737288.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113888180|gb|ABI42231.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 409 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 173/404 (42%), Positives = 250/404 (61%), Gaps = 12/404 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L ++V + + GY++PTPIQ++ IP +L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSALSLHSQLVNTLAELGYLQPTPIQVEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L P R L+L PTRELA QV +F KY K ++ V + GG+ EAQ Sbjct: 61 QQLLLDNESQDAPKDIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + + G DVLI TPGR+LDH +G L + + +LV DEADRMLDMGF+ I+ + VP Sbjct: 121 EFKAGVDVLIATPGRLLDHLRQGVLNLKYLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT+ D + S+N L++PK IEV ++TA +E A + +K + Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDS--DRKTEFVSH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S++ + +IF K+ V L L + G + A HG++ Q +R K+L +FK+G +Q Sbjct: 239 LVRSKN-WQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI D+ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED + Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357 Query: 358 DAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395 + +E L++K++ W G D + + P P AQ A+K Sbjct: 358 EEVEALLDKRLPQQWYPGFEPDFNKMEPEPRRNSKAAQKQRAKK 401 >gi|209518298|ref|ZP_03267123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] gi|209501217|gb|EEA01248.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] Length = 443 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 174/408 (42%), Positives = 246/408 (60%), Gaps = 18/408 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLDGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L R+ R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 QRLNSMPPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+RG D+++ TPGR+LDH + + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 ALKRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++++ L +P IEV ++TAET+ +K LL Sbjct: 181 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKI--HPVDRDRKRELLTH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK+GT+Q Sbjct: 239 LIRQHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQ 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 IEKLI++ V P E I + + K PI ++S G Sbjct: 358 KDIEKLIKRPV------------PQEVIAGFEPDPTAKPEPIQRRSQG 393 >gi|117919611|ref|YP_868803.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117611943|gb|ABK47397.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 409 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 174/404 (43%), Positives = 249/404 (61%), Gaps = 12/404 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L ++V + + GY +PTPIQI+ IP +L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L P R L+L PTRELA QV +F KY K ++ V + GG+ EAQ Sbjct: 61 QQLLIDNESQDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + + G DVLI TPGR+LDH +G L + + +LV DEADRMLDMGF+ I+ + VP Sbjct: 121 EFKAGIDVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT+ D + S+N L++PK IEV ++TA +E A + +K + Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDS--DRKTEFVSH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S++ + +IF K+ V L L + G + A HG++ Q +R K+L +FK+G +Q Sbjct: 239 LVRSKN-WQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI D+ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED + Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357 Query: 358 DAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395 + +E L++K++ W G D + + P P AQ A+K Sbjct: 358 EEVEALLDKRLPQQWYPGFEPDFNKMEPEPRRNSKAAQKQRAKK 401 >gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 504 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 169/391 (43%), Positives = 240/391 (61%), Gaps = 9/391 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D GLS +++ A+ D GY PTPIQ IP+VLQ DV G AQTGTGKTA F LP++ Sbjct: 16 LRFEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPII 75 Query: 61 TIL----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L + R P R LIL PTRELA QVA+N + Y ++ L ++ GG+ Q Sbjct: 76 QLLLANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQ 135 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L G +++I TPGR+LDH + L ++ +ILV+DEADRMLDMGF+P +Q I +L+P Sbjct: 136 TAALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ L+FSAT + E++K++ +FL NP IEV + TA+ + + +K+ ++ Sbjct: 196 KKRQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQVVYKVDSDDAKRD-IV 254 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ + +K ++F N K L LEK G AIHG+ Q RM L FK G Sbjct: 255 AHLIRGRQ-LKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKGGE 313 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGLDI D+ V N+D+P AE+Y+HRIGRTGRAG G A +L +D + Sbjct: 314 IDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFTTKDER 373 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386 + IEKLI K ++ +L PP+E+ + Sbjct: 374 LLLDIEKLINHK--FVPAELVGYTPPVERAE 402 >gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 533 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 154/369 (41%), Positives = 237/369 (64%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+SP+++ AV D G+ +P+PIQ++TIP +L D+ G AQTGTGKTA+F +P+L Sbjct: 10 FADLGVSPEILRAVDDMGFEEPSPIQLQTIPQLLDGRDLVGQAQTGTGKTAAFAIPLLMR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ AR P+ L++ PTRELA QVA+ F + G+ N V + GG Q K L+RG Sbjct: 70 LQ---ARRGWPQVLVMTPTRELAIQVAEEFARVGRYTNTRVLPVYGGQSIGRQIKTLQRG 126 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR+LDH NR L + ++ +V+DEAD MLDMGFI I++I + P +RQTLL Sbjct: 127 VDVVVGTPGRVLDHLNRKTLRLEQLQAVVLDEADEMLDMGFIDDIESILNATPPSRQTLL 186 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240 FSAT+ + +++E +++ P + +N A I + + C +L Sbjct: 187 FSATIPGPIARLAEKYMRTPVHVSINPEYVAAPDIWQVYYELRNIDHLEALCRIL----- 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ IIFC K+ V L +L +G+S IHG+++Q R +++ F+EG I L+V Sbjct: 242 DAEAVERAIIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+D P E+Y+HRIGRTGRAGR G A TLV +++ + I Sbjct: 302 ATDVAARGIDVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKELPLLRTI 361 Query: 361 EKLIEKKVD 369 ++L++ +++ Sbjct: 362 QRLVKVRIE 370 >gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000] gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum GMI1000] Length = 495 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 166/373 (44%), Positives = 237/373 (63%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL P ++ A+ ++GY + TPIQ IP+V+ DV G AQTGTGKTA F LP++ Sbjct: 17 FDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQN 76 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QV DN KY K+ L A++ GG+ Q + Sbjct: 77 LLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTE 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG +VL+ TPGR+LDH + + ++ + +LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 137 QLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ ++L++P+ IEV ++TA+ + + T K+ AL+ Sbjct: 197 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQV-IYTVPDGHKQAALVHL 255 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q I+F N K L +LE++ + AIHG+ Q RM+ L FK+GT Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGT 315 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G A +L A D + Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 376 LLADIEKLIKRNL 388 >gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1] gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum AMB-1] Length = 476 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 164/368 (44%), Positives = 235/368 (63%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL+ ++ A+ GY PTPIQ ++IP +LQ DV G+AQTGTGKTASF LP+L Sbjct: 5 FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64 Query: 63 LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ K RA + R L+L PTRELA QV +F+ YG +Y L AL+ GG+ Q K + Sbjct: 65 LDQFKKRAMPKSCRILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMA 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR+LD +G + ++++E LV+DEADRMLDMGFI I+ I +LVP RQT Sbjct: 125 GGVDVLVATPGRLLDLIEQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVALVPKQRQT 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM D + ++ + L P R+EV SST + I+ + + K LL +L Sbjct: 185 VLFSATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVL--FVDREHKRTLLTDILA 242 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + ++F K + LEK G AIHGN Q +R K L++F++G I+ +V Sbjct: 243 GKDVGR-ALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALADFRDGRIKALV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV NF++PN E+Y+HRIGRT RAG G A +L +++ ++ I Sbjct: 302 ATDIAARGIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSLCDGDEVAYLRDI 361 Query: 361 EKLIEKKV 368 EK I + + Sbjct: 362 EKTIRQAI 369 >gi|308272082|emb|CBX28690.1| ATP-dependent RNA helicase rhlE [uncultured Desulfobacterium sp.] Length = 398 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 161/370 (43%), Positives = 240/370 (64%), Gaps = 8/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L+P + + DAG+V PTPIQ K IPLV+ D+ G+AQTGTGKTA+FVLP+L Sbjct: 1 MEFKTFNLNPDIEAGIADAGFVTPTPIQTKAIPLVMDGQDIMGLAQTGTGKTAAFVLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R VR +LI+ PTRELA Q+ D+ GK+ + + GG+ Q +KL Sbjct: 61 HRLIQGKRGHVR---SLIIAPTRELAEQIHDDINTLGKDTRIRSVTVYGGVNINTQIQKL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RGA++++ PGR+LDH R + + +E+LVIDEAD M DMGF+P I+ I +P RQ Sbjct: 118 KRGAEIVVACPGRLLDHMTRKTIDLTRVEVLVIDEADHMFDMGFLPDIRRILKHLPAQRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM DE++ ++++ L++P I+V + + A+T+ H AQ+ K A L +LL Sbjct: 178 TLLFSATMPDEIKSLAKDILKDPITIKV-SETVPADTVSHAHYPV-AQHL-KTAFLLKLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ K+ ++F K +L L K GF ++ GN+ Q R L F+ G IQ++ Sbjct: 235 EHINS-KSVLVFTRTKHRAKHLDEQLAKAGFRSASLQGNLSQVRRQAALDGFRNGRIQVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+P+ + YIHRIGRTGRA + G AFTL+ ED K ++ Sbjct: 294 VATDIAARGIDVCKISHVINYDIPDTPDAYIHRIGRTGRADQSGDAFTLITSEDKKMVNI 353 Query: 360 IEKLIEKKVD 369 I+++I K++ Sbjct: 354 IDRVIGSKIE 363 >gi|56460652|ref|YP_155933.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] gi|56179662|gb|AAV82384.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] Length = 416 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 173/416 (41%), Positives = 247/416 (59%), Gaps = 16/416 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS ++ AV + GY PTPIQ + IP V+ HD+ AQTGTGKTA F LP+L Sbjct: 10 FQSLGLSDDILRAVTECGYTTPTPIQQQAIPTVMAGHDLLAAAQTGTGKTAGFTLPLLHK 69 Query: 63 LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + + + + + LIL PTRELAAQV DN Y K L ++ GG+ Q L R Sbjct: 70 LSQTKTDGKPVIKALILTPTRELAAQVEDNLNTYAKYTGLKSLVIFGGVGINPQISALRR 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+L+ TPGR+LDH +G + ++ I++L++DEADRMLDMGFI I+ + L+P RQTL Sbjct: 130 GVDILVATPGRLLDHSRQGTVDLSKIDVLILDEADRMLDMGFIHDIKKVMKLIPEKRQTL 189 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + E++ +S+ F+Q PK IEV ++ A+TIE +K LL L+ S Sbjct: 190 LFSATFSSEIKALSQQFMQQPKLIEVARQNAAADTIEQRVYPV--DKKRKRELLSYLIGS 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + ++F K L L G AIHGN Q +R K L+ FK G ++++VA Sbjct: 248 RN-WRQVLVFTRTKHGANRLATQLTDDGLPAMAIHGNKSQGARTKALAQFKAGKLRVLVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI ++ HV NF++P AE+Y+HRIGRTGRAG G+A +LV ++ K + IE Sbjct: 307 TDIAARGIDIDELPHVINFELPQVAEDYVHRIGRTGRAGSEGEAASLVCVDEHKLLRDIE 366 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 KL + ++ P E I + + + K PI + TG + + QK Sbjct: 367 KLTKNEI------------PREVIPGFEPDPSIKPEPIQKPRTGRPQNSRRAPRQK 410 >gi|117621566|ref|YP_856876.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562973|gb|ABK39921.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 466 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 167/371 (45%), Positives = 237/371 (63%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY P+PIQ + IP VL D+ AQTGTGKTA F LPML Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + +V R+ R L+L PTRELAAQV ++ YGK+ + ++ GG+ Q Sbjct: 61 QRLTESKRKVSPNRI-RALVLTPTRELAAQVGESVRNYGKHLPIRSHVVFGGVSINPQMM 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 RG DVL+ PGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I +L+P Sbjct: 120 ATRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALLPKK 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT DE+++++ L NP IEV +STAE IE + + K ALL Sbjct: 180 RQNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTAERIEQ--LVHPCDKANKIALLSH 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ S + + ++F K + +L+K G S AIHGN Q +R + L+ FK+G+++ Sbjct: 238 LVTS-NNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVK 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + V NF++PN AE+Y+HRIGRTGRAG G A +LVA ++ K I Sbjct: 297 VLVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLI 356 Query: 358 DAIEKLIEKKV 368 AIE+L ++ + Sbjct: 357 KAIERLTKQNI 367 >gi|330829717|ref|YP_004392669.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565] gi|328804853|gb|AEB50052.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565] Length = 466 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 166/370 (44%), Positives = 235/370 (63%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY P+PIQ + IP VL D+ AQTGTGKTA F LPML Sbjct: 1 MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML 60 Query: 61 TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + +V R L+L PTRELAAQV ++ YGK+ + ++ GG+ Q Sbjct: 61 QRLMESKRKVSPNRVRALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 RG DVL+ PGR++D +N+ + + +EILV+DEADRMLDMGFI I+ I +L+P R Sbjct: 121 TRRGLDVLVACPGRLIDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALMPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT DE+++++ L NP IEV +STAE IE + + K ALL L Sbjct: 181 QNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTAERIEQ--LVHPCDKANKIALLSHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S + + ++F K + +L+K G S AIHGN Q +R + L+ FK+G++++ Sbjct: 239 VTS-NNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + V NF++PN AE+Y+HRIGRTGRAG G A +LVA ++ K I Sbjct: 298 LVATDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIK 357 Query: 359 AIEKLIEKKV 368 AIE+L ++ + Sbjct: 358 AIERLTKQSI 367 >gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1003] gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003] Length = 517 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 167/373 (44%), Positives = 233/373 (62%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + R R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 QRLHSMPPVAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G D+++ TPGR+LDH + + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 IGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT +DE++ +++N L +P IEV ++TAET+ KK LL Sbjct: 181 PKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPV--DRDKKRELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK+GT Sbjct: 239 THLIKQHNWFQV-LVFTRTKHGANRLAEQLSKDGISALAIHGNKSQSARTRALAEFKDGT 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++++ Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ V Sbjct: 358 LLKDIEKLIKRPV 370 >gi|75908173|ref|YP_322469.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC 29413] gi|75701898|gb|ABA21574.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC 29413] Length = 426 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 165/375 (44%), Positives = 237/375 (63%), Gaps = 8/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +++ AV + GY KPTPIQ+++IP VL D+ AQTGTGKTASF LP+L Sbjct: 1 MSFSHLGLSNEIIRAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLL 60 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L + + R LIL PTRELAAQV + YGK NL ++ GG+ Q Sbjct: 61 HLLSQDSLKSASSPSSPIRALILTPTRELAAQVESSVRDYGKYLNLNSMVMFGGVSINPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++L+ D+L+ TPGR+LDH +G + ++ IEILV+DEADRMLDMGFI I+ I SL+P Sbjct: 121 KQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLF AT +D++++++ L P+ IEV + TA+T+ + +K LL Sbjct: 181 KQRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKI--ERDRKRDLL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ +D ++F K L L + AIHGN Q +R L+ FK G+ Sbjct: 239 AHLIR-KDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGS 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARGLDI ++ +V NFD+P E+Y+HRIGRTGRAG G+A +LV+ ++ Sbjct: 298 LQVLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYH 357 Query: 356 HIDAIEKLIEKKVDW 370 + IEKLIEK++ + Sbjct: 358 LLADIEKLIEKRLPF 372 >gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] Length = 518 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 167/371 (45%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L R+ R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 QRLNSMAPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+RG D+++ TPGR+LDH + + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 ALKRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++++ L +P IEV ++TAET+ +K LL Sbjct: 181 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLTH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ Q + ++F K L L K G S AIHGN Q +R + L+ FK+GT+Q Sbjct: 239 LIR-QHSWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQ 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 357 Query: 358 DAIEKLIEKKV 368 IEKLI++ V Sbjct: 358 KDIEKLIKRPV 368 >gi|315126209|ref|YP_004068212.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] gi|315014723|gb|ADT68061.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] Length = 465 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 156/365 (42%), Positives = 234/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AVL+ GY PTPIQ + IP ++ R DV AQTGTGKTA F LP++ Sbjct: 1 MSFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLI 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G +A+ R LIL PTRELA QV++N E+Y K+ +++ ++ GG+ Q ++L Sbjct: 61 ERLSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR++D N+ + ++IE+LV+DEADRMLDMGFI I+ + + +P RQ Sbjct: 121 RKGVDILVATPGRLIDLHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +D+++ +++ + +P I V ++TA+++ C A ++K ALL L+ Sbjct: 181 NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAV--DKARKTALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +S + + ++F K L LE+ AIHGN Q +R+K L FK G ++++ Sbjct: 239 RS-NNWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLDI ++ HV N+D+PN E+Y+HRIGRTGRAG G A + V +D + Sbjct: 298 VATDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYG 357 Query: 360 IEKLI 364 IE+ I Sbjct: 358 IERFI 362 >gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM 2379] Length = 454 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 160/374 (42%), Positives = 233/374 (62%), Gaps = 5/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV GY PTPIQ + IP+V+ D+ AQTGTGKTA+FVLP L Sbjct: 1 MTFEELNLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPAL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + PR L+L PTRELA Q D YG+ L ++GG+P+ Q + L Sbjct: 61 QRLSTPSSVPGKGPRVLVLTPTRELAGQCIDAARSYGRGARLRCGSILGGMPYREQLRLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR+LDH RG + +N +E+LV+DEADRMLDMGF ++ I S P RQ Sbjct: 121 SAPVDLIVATPGRLLDHLERGSIALNRLEMLVLDEADRMLDMGFSEDMEKIVSAAPQERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238 TL+F+ATM + K++E L+NP+RIE+ +S+ E IE VA + K+ LL+ L Sbjct: 181 TLMFTATMGTTVLKLAEKMLRNPQRIELAVRTSSHELIEQRLHVADNLGHKKE--LLRHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S + IIF K++ L L ++G +HG+++Q +R K + ++G I+L Sbjct: 239 V-SDKGLTRAIIFSATKRDADELARELSREGHPAAPLHGDMNQFARNKTIERMRKGAIRL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV NFD+P AE+Y+HRIGRTGRAG G A + V+ ++ +++ Sbjct: 298 LVATDVAARGLDVNGISHVINFDLPRFAEDYVHRIGRTGRAGASGIAISFVSPSELSYLE 357 Query: 359 AIEKLIEKKVDWLN 372 IE+ I KK+ N Sbjct: 358 RIERFIGKKLPEQN 371 >gi|254461770|ref|ZP_05075186.1| ATP-dependent RNA helicase DeaD [Rhodobacterales bacterium HTCC2083] gi|206678359|gb|EDZ42846.1| ATP-dependent RNA helicase DeaD [Rhodobacteraceae bacterium HTCC2083] Length = 450 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 156/374 (41%), Positives = 239/374 (63%), Gaps = 5/374 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +GLS ++V + + G PTPIQ + IP L HDV G+AQTGTGKTA+F LP++T Sbjct: 6 EFETMGLSERLVARLKELGLTTPTPIQARAIPEALNGHDVLGLAQTGTGKTAAFGLPLIT 65 Query: 62 ILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + GR + R LIL PTRELA Q+ +N + Y K + VAL++GG Q+K+L Sbjct: 66 LLSENPGRPSPKTVRALILAPTRELAGQIVENLKDYTKGTPIKVALVVGGQSINVQSKRL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+G D+L+ TPGR++D +R L + LV+DEAD+MLDMGFI ++ I +++P RQ Sbjct: 126 EKGIDILVATPGRLIDLMDRRALTLKESHFLVLDEADQMLDMGFIHALRQIAAVLPEQRQ 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + +++ +L++PKRI+V+ P A+ + V + ++K +LL +LL Sbjct: 186 TMLFSATMPKLMNEIANTYLKSPKRIQVSPPGKAADKVTQ--VVHFIAKTEKQSLLIELL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L L +GF+ +IHGN Q R + L+ FK G ++++ Sbjct: 244 GAHKD-ERALVFGRTKHGCEKLMKQLVARGFAATSIHGNKSQGQRERALAAFKAGEMKVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIPDV HV+N+++PN + Y+HRIGRT RAG+ G A A +++ + Sbjct: 303 VATDVAARGLDIPDVRHVYNYELPNVPDAYVHRIGRTARAGKDGAAIAFCAPDEMDLLKD 362 Query: 360 IEKLIEKKVDWLNG 373 IEK ++ + +G Sbjct: 363 IEKTMKISIPVASG 376 >gi|197119659|ref|YP_002140086.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem] gi|197089019|gb|ACH40290.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem] Length = 471 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 165/407 (40%), Positives = 242/407 (59%), Gaps = 25/407 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF L PKV + GYV PTPIQ++ IP V+ DV G+AQTGTGKTA+F LPML Sbjct: 1 MDFKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPML 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++++ R VR L+L PTRELA Q+ D GK L + GG+ Q KKL Sbjct: 61 HRLVQEERGHVR---GLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKKL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA++++ PGR+LDH ++G + ++ +EILV+DEAD+M DMGF+P ++ I +P RQ Sbjct: 118 KEGAEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM D++++++ L+NP ++V+ ++ A T+ H K LL ++L Sbjct: 178 NLMFSATMPDDIRRLAHEILRNPVTVQVSR-TAPAATVSHALYPVGQHL--KTPLLFEML 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + DT ++ +IF K + LEK G+ ++ GN+ Q R L F++GT Q+M Sbjct: 235 KHTDT-ESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIM 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+P+ E Y HRIGRTGRA + G AFT+V ED + + Sbjct: 294 VATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRS 353 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406 IEK++ K++ +E D A P PQK T F Sbjct: 354 IEKVLGTKIERRR---------IEGFDYAV--------PAPQKDTEF 383 >gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens DSM 3043] gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens DSM 3043] Length = 452 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 166/370 (44%), Positives = 228/370 (61%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ K IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFTSLGLSAPILDAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G RA + R LIL PTRELAAQ+ N E YGK+ L A++ GG+ Q KL Sbjct: 61 ERLAAGTRAPGKQVRALILTPTRELAAQIGANIEAYGKHLPLRSAVVFGGVKINPQIAKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + +++LV+DEADRMLDMGFI I+ I +P RQ Sbjct: 121 RGGVDILVATPGRLLDLHGQKAVNFDALDVLVLDEADRMLDMGFIHDIRRILKTLPSKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + +P I V ++TAET+ ++K ALL L+ Sbjct: 181 NLLFSATFSQEIRQLAKGLVNDPVEISVTPRNTTAETVTQWI--HPVDKARKPALLTHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L LE+ G AIHGN Q +R K L FK G I+++ Sbjct: 239 H-EHQWQQVLVFMRTKHGANRLSRHLEEAGIEAAAIHGNKSQNARTKALDGFKSGEIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NF++PN AE+Y+HRIGRTGRAG G A +LV E+ K + Sbjct: 298 VATDIAARGLDINQLPQVVNFELPNVAEDYVHRIGRTGRAGASGHAISLVCAEEGKELAG 357 Query: 360 IEKLIEKKVD 369 IE+LI + ++ Sbjct: 358 IERLIRQTLE 367 >gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis biprosthecum C19] gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis biprosthecum C19] Length = 606 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 152/368 (41%), Positives = 237/368 (64%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGLSP ++ + GY KPTP+Q + IP +L+ HD+ GIAQTGTGKTA+F LP+L Sbjct: 4 FSDLGLSPTLLMTLEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQH 63 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R +M R LIL PTRELA+Q+A++F+ Y K L +A + GG+ + Q K L Sbjct: 64 LLSNRKMPSPKMVRALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQYKALL 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+CTPGR++DH + + ++ +E V+DEAD+MLD+GF+ I+ + S +P RQ Sbjct: 124 GGLDVLVCTPGRLIDHIEQKTVDLSQVECFVLDEADQMLDLGFVKPIRQVASRLPKKRQN 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ ++ L +PKR+E+ ++TAE + + AQ +K ALL ++ Sbjct: 184 LFFSATMPKEIGVLASELLTDPKRVEITPEATTAERVSQQVLFIEAQ--RKRALLSEMY- 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ ++F K++ + L+ G AIHG+ +Q R + L F+ G ++ +V Sbjct: 241 ADAVLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRALV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N+++PN AE Y+HRIGRT RAG+ G + TL A ++ + + I Sbjct: 301 ATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERRLLKDI 360 Query: 361 EKLIEKKV 368 E++ +++ Sbjct: 361 ERVTRQRI 368 >gi|75674512|ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] gi|74419382|gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] Length = 476 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 173/438 (39%), Positives = 251/438 (57%), Gaps = 12/438 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F D GL+ + A+ + Y+ PTPIQ +TIP+ L D+ GIAQTGTGKTA+F LP+L Sbjct: 9 SFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDLVGIAQTGTGKTAAFALPILH 68 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R + + R L+L PTREL+ Q+ +NF YG++ LT AL IGG+P Q + + Sbjct: 69 RLLQNRIKPQPKSCRVLVLSPTRELSGQILENFNAYGRHLRLTSALAIGGVPMGRQVRAV 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G +V++ TPGR+LD L + +E LV+DEADRMLDMGFI I+ + + +P RQ Sbjct: 129 MHGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPAKRQ 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSATM ++ +++ L++P R+ V SST + I + ++ K A L QLL Sbjct: 189 TLFFSATMPKDIAELANQMLRDPARVAVTPVSSTVDRITQRII--QVDHAGKAAFLAQLL 246 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + +IF K + SL K G AIHGN Q R ++L+ F+ G I+ + Sbjct: 247 K-QEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAEFRAGEIRTL 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358 VA+D+AARG+D+ + HV NFD+PN E Y+HRIGRT RAG G A +LVA E++ ++ Sbjct: 306 VATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTDGAAISLVAGAEEMAYLR 365 Query: 359 AIEKLIE----KKVDWLNGDLSSLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDRRKKN 412 IEKLI ++ +G + P + A H HA + RR K Sbjct: 366 DIEKLIRVVLPREDRRTSGQREAAPAPQQNRGGSPAPHGHAARAGDASSGKGSRRRRSKK 425 Query: 413 YSSQKSHIPLKESEKISK 430 + Q S P ++ S+ Sbjct: 426 GTPQTSRRPESGRQETSR 443 >gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp. SKA14] gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp. SKA14] Length = 473 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 167/374 (44%), Positives = 239/374 (63%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PTPIQ + IPL L D+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T ++ R+ R PR LIL PTRELA QV D+ Y K + A + GG+ Q Sbjct: 61 QHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L RG D+L+ PGR++DH R + ++ IE+LV+DEADRMLDMGF+P I+ I + +P Sbjct: 121 DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK 180 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT D +++++ F++NP++I+V ++ AETI H A +K LL Sbjct: 181 QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDA--GRKRDLL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL +QD+ + ++F K L LEK G AIHGN Q R++ L +FK G Sbjct: 239 LHLL-AQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGR 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARG+DI ++ V NFD+P AE+Y+HRIGRTGR G G+A +LVA++++K Sbjct: 298 VTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVK 357 Query: 356 HIDAIEKLIEKKVD 369 + AI +L+ + +D Sbjct: 358 LLRAITRLLGRDMD 371 >gi|91977976|ref|YP_570635.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5] gi|91684432|gb|ABE40734.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5] Length = 482 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 161/365 (44%), Positives = 230/365 (63%), Gaps = 6/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D GL+ + A+ + Y PTPIQ +TIPL L DV GIAQTGTGKTASF LP+L Sbjct: 10 FQDFGLADPISRALQEENYTIPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHR 69 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++ + + + R L+L PTREL+ Q+ D+F YG++ L+ L IGG+P Q + L Sbjct: 70 ILADRIKPQPKNCRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLM 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G +VL+ TPGR+LD L + +E LV+DEADRMLDMGFI I+ I + +P RQT Sbjct: 130 QGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ ++E L++P R+ V +ST E I + + +S K A+L Q+LQ Sbjct: 190 LFFSATMPKDIADLAEQMLRDPARVAVTPVASTVERINQRVI--HLDHSAKPAMLAQILQ 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD + ++F K + L++ G + AIHGN Q R ++L+ F+ G ++ +V Sbjct: 248 -QDGVNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTGELRTLV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359 A+D+AARG+D+ V HV NFD+PN E Y+HRIGRT RAG G A +L A E++ ++ Sbjct: 307 ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEEVGYLRD 366 Query: 360 IEKLI 364 IEKLI Sbjct: 367 IEKLI 371 >gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120] gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120] Length = 426 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 166/375 (44%), Positives = 237/375 (63%), Gaps = 8/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +++ AV + GY KPTPIQ+++IP VL D+ AQTGTGKTASF LP+L Sbjct: 1 MSFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLL 60 Query: 61 TILE----KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L K + P R LIL PTRELAAQV + YGK L ++ GG+ Q Sbjct: 61 HLLSQDSLKSASNASSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++L+ D+L+ TPGR+LDH +G + ++ IEILV+DEADRMLDMGFI I+ I SL+P Sbjct: 121 KQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLF AT +D++++++ L P+ IEV + TA+T+ + +K LL Sbjct: 181 KQRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKI--ERDRKRDLL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ +D ++F K L L + AIHGN Q +R L+ FK G+ Sbjct: 239 AHLIR-KDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGS 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARGLDI ++ +V NFD+P E+Y+HRIGRTGRAG G+A +LV+ ++ Sbjct: 298 LQVLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYH 357 Query: 356 HIDAIEKLIEKKVDW 370 + IEKLIEK++ + Sbjct: 358 LLADIEKLIEKRLPF 372 >gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] Length = 510 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 168/373 (45%), Positives = 232/373 (62%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L A R R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 QRLNSMPANTSASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L G D+++ TPGR+LDH + + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT +DE++ +++N L +P IEV ++TAET+ KK LL Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPV--DRDKKRELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK+GT Sbjct: 239 THLIKQHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++++ Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ V Sbjct: 358 LLKDIEKLIKRPV 370 >gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 409 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 173/404 (42%), Positives = 249/404 (61%), Gaps = 12/404 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L ++V + + GY +PTPIQI+ IP +L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPVL 60 Query: 61 TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L P R L+L PTRELA QV +F KY K ++ + + GG+ EAQ Sbjct: 61 QQLLLDNQSQDAPKDIRALVLVPTRELAVQVQQSFGKYAKGTDIRIGIAYGGVSIEAQQA 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + + G DVLI TPGR+LDH +G L + ++ +LV DEADRMLDMGF+ I+ + VP Sbjct: 121 EFKAGIDVLIATPGRLLDHLRQGALNLKHLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT+ D + S+N L+ PK IEV ++TA +E A + +K + Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLREPKLIEVAKRNTTAAQVEQRVYAIDS--DRKTEFVSH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S++ + +IF K+ V L L + G + A HG++ Q +R K+L +FK+G +Q Sbjct: 239 LVRSKN-WQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQ 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI D+ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED + Sbjct: 298 VLVATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQEDALLL 357 Query: 358 DAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395 + +E L++K++ W G D + + P P AQ A+K Sbjct: 358 EEVEALLDKRLPQQWYPGFEPDFNKMEPEPRRNSKAAQKQRAKK 401 >gi|92116022|ref|YP_575751.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14] gi|91798916|gb|ABE61291.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14] Length = 477 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 161/366 (43%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F D GL+ + A+ + Y+ PTPIQ +TIPL L D+ GIAQTGTGKTASF LP+L Sbjct: 9 SFQDFGLADPITRALAEENYLTPTPIQTQTIPLALAGRDIVGIAQTGTGKTASFALPILH 68 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R + + R L+L PTREL+ Q+ ++F YG++ LT AL IGG+P Q + + Sbjct: 69 RLLQNRIKPQPKSCRVLVLSPTRELSGQILESFNAYGRHLRLTSALAIGGVPMGRQVRAV 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G +V++ TPGR+LD L + +E LV+DEADRMLDMGFI I+ + + +P RQ Sbjct: 129 MQGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPVKRQ 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSATM ++ +++E L++P R+ V +ST + I + ++ K A L QLL Sbjct: 189 TLFFSATMPKDIAELAEQMLRDPARVAVTPVASTVDRIAQRII--QVDHASKPAFLAQLL 246 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + +IF K + SL K G AIHGN Q R ++L+ F+ G I+ + Sbjct: 247 K-QEPVNRALIFTRTKHGADKVVKSLAKSGIRSDAIHGNKSQNHRERVLAAFRTGEIRTL 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358 VA+D+AARG+D+ + HV NFD+PN E Y+HRIGRT RAG G A +LVA E++ ++ Sbjct: 306 VATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGADGAAISLVAGAEEMAYLR 365 Query: 359 AIEKLI 364 IEKLI Sbjct: 366 DIEKLI 371 >gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3] gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3] Length = 510 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 156/372 (41%), Positives = 235/372 (63%), Gaps = 5/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +GL+ ++ A+ GY KPTPIQ K IP V+Q D+ GIAQTGTGKTA+F LP+L Sbjct: 18 FESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILHR 77 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R + R R L+L PTRELA Q+ D+F+ YG + VA++ GG+ + AQ + L+ Sbjct: 78 LAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQERALQ 137 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ PGR+LDH + L +++ EILV+DEAD+MLD+GFI I+ I S +P RQ Sbjct: 138 QGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPAKRQN 197 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ K++ L++P +++V S+T + I V + + +K ALL ++ Sbjct: 198 LFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVV--HVEQGRKRALLTEMFS 255 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++F K + LE G AIHGN Q R + L FK+G ++++V Sbjct: 256 DPEYTRC-LVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVLV 314 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV NF++P+ E Y+HRIGRT RAG G A + VA +++K + I Sbjct: 315 ATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLKDI 374 Query: 361 EKLIEKKVDWLN 372 EK+ +K+ ++ Sbjct: 375 EKVTRQKIPAID 386 >gi|261253372|ref|ZP_05945945.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891] gi|260936763|gb|EEX92752.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891] Length = 488 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 160/367 (43%), Positives = 237/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAIEEQGYDTPSPIQEQAIPAVLSGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ G R + R LIL PTRELAAQV +N KY ++ +LT ++ GG+ Q KL Sbjct: 61 ERLDNGQRVKGNHIRALILTPTRELAAQVQENVFKYSRHQSLTSQVVFGGVKVNPQMLKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVL+ TPGR+LD + + + + +E+LV+DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 RKGCDVLVATPGRLLDLYQQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILNVLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++++++ + +P + VN +STA TIE A KK +L +L+ Sbjct: 181 NLLFSATFSAEIRELAKGLVNDPVEVSVNKENSTAVTIEQSIYP--ADKRKKAPMLVKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + K ++FC K L L K+G + IHGN Q +R + L++FK G ++++ Sbjct: 239 KDGN-WKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + V N+++P+ +E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 VATDIAARGIDIPQLPQVVNYELPHVSEDYVHRIGRTGRAGEVGRAISLVEADEAGELFG 357 Query: 360 IEKLIEK 366 IE+LI++ Sbjct: 358 IERLIQQ 364 >gi|291614123|ref|YP_003524280.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] gi|291584235|gb|ADE11893.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] Length = 511 Score = 313 bits (801), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 160/361 (44%), Positives = 231/361 (63%), Gaps = 3/361 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL+P ++ AV DAGY P+PIQ + IP L HD+ AQTGTGKTA+F+LP L Sbjct: 20 FATLGLNPAILKAVQDAGYTVPSPIQAQAIPEALAGHDLMASAQTGTGKTAAFILPALQR 79 Query: 63 LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R + PR L+L PTRELA QV+D KYGKN + V ++GG+P+ QNK L Sbjct: 80 LSVESAVRSKGPRVLVLTPTRELAQQVSDAANKYGKNMRVKVVSILGGMPYPLQNKLLSG 139 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+L+ TPGR++DH RG++ + +E+LV+DEADRMLDMGFI ++ I + P TRQTL Sbjct: 140 FVDILVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIDDVERIAAATPATRQTL 199 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ + +++ L++PKRI V + + E IE + + K LL LL+ Sbjct: 200 LFSATLEGVIGNLAQRLLKSPKRISVTSAQAKHENIEQRLM-YVDDMAHKNRLLDHLLRD 258 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + ++F K++ +L L G + A+HG+++QR R + L N + G ++++VA Sbjct: 259 VD-LNQALVFTATKRDADSLADELSAAGHAAAALHGDMNQRERNRTLLNLRRGNVRVLVA 317 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ + HV NFD+P AE+Y+HRIGRTGR G G A + + D H+ IE Sbjct: 318 TDVAARGIDVAGITHVINFDLPKFAEDYVHRIGRTGRGGASGIAVSFASNRDAMHLKKIE 377 Query: 362 K 362 + Sbjct: 378 R 378 >gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM 15868] gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM 15868] gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer RA-YM] gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer RA-GD] Length = 371 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 161/364 (44%), Positives = 228/364 (62%), Gaps = 3/364 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L LS ++ A+ DAGY PT IQ K IP +L+ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MNFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL + + + R LIL PTRELA Q+ +N E+Y K N+ + GG+P Q + L Sbjct: 61 QILSETPKKGKSVRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALN 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+LI TPGR+LD +G L ++ IEILV+DEADRMLDMGF+ ++ I + VP RQT Sbjct: 121 QGVDILIATPGRLLDLMQQGLLSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM + +++ +E L NP + V SSTA+TIE + + + K LL +L+ Sbjct: 181 LFFSATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVY--FVEKNDKTNLLINILK 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ +IF K L L + G AIHGN Q +R K L +FK+ I +++ Sbjct: 239 DTSELRS-LIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ V N+++PN E Y+HRIGRTGRAG G A + E+ K + I Sbjct: 298 ATDIAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGTEERKDLKNI 357 Query: 361 EKLI 364 +KLI Sbjct: 358 QKLI 361 >gi|33598065|ref|NP_885708.1| putative ATP-dependent RNA helicase [Bordetella parapertussis 12822] gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis] Length = 477 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 170/424 (40%), Positives = 255/424 (60%), Gaps = 18/424 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FAD GL P ++ ++ D GY PTPIQ + IP+V++ DV G AQTGTGKTA+F LP+L Sbjct: 19 FADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 78 Query: 61 --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + R P R LIL PTRELA QV ++ ++Y + L A++ GG+ Q + Sbjct: 79 LMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKE 138 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG +VL+ TPGR+LDH + + ++ + ILV+DEADRMLDMGF+P ++ I L+P Sbjct: 139 ALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT ++E++K+ ++L +P IEV ++TA+T+ +A K A + Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQ--IAYQMHGDTKRAAVVH 256 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S+ +K I+F N K L LE+ G +IHG+ Q RMK L FK G ++ Sbjct: 257 LVKSRG-LKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLE 315 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ V V N+D+P AE+Y+HRIGRTGRAG G+A L ++ +++ Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERYL 375 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 IEKLI+++V +L + D+ +H R + + G DR + + Sbjct: 376 LDIEKLIKRQVPRGKLELPA--------DLVARSHGRDRD--APRERGADRHRGERRTSG 425 Query: 418 SHIP 421 + P Sbjct: 426 AAAP 429 >gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1001] gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001] Length = 530 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 167/373 (44%), Positives = 233/373 (62%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + R R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 QRLHSMPPLAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G D+++ TPGR+LDH + + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 IGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT +DE++ +++N L +P IEV ++TAET+ KK LL Sbjct: 181 PKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPV--DRDKKRELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK+GT Sbjct: 239 THLIKQHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++++ Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ V Sbjct: 358 LLKDIEKLIKRPV 370 >gi|207727993|ref|YP_002256387.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] gi|206591237|emb|CAQ56849.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] Length = 559 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 239/376 (63%), Gaps = 11/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY +PTPIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 17 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 76 Query: 61 TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L + +V P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 77 HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 136 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L+RG D+++ TPGR+LDH + + +++IE+LV+DEADRMLDMGFI I+ I + Sbjct: 137 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 196 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +D+++ +++ L P IEV ++TAET+E +K Sbjct: 197 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 254 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L++ D ++F K L L + G S AIHGN Q +R + LS FK Sbjct: 255 ELLAKLVRDND-WHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 313 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT++++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV + Sbjct: 314 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 373 Query: 353 DIKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 374 EHGLLRDIERLIKREL 389 >gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551] gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551] Length = 566 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 166/373 (44%), Positives = 237/373 (63%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL P ++ A+ ++GY +PTPIQ IP+V+ DV G AQTGTGKTA F LP++ Sbjct: 88 FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 147 Query: 63 L----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R P R LIL PTRELA QV DN KY K L A++ GG+ Q + Sbjct: 148 LLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTE 207 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++L+ TPGR+LDH + + ++ + +LV+DEADRMLDMGF+P +Q I +L+P Sbjct: 208 QLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAH 267 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + E++K++ ++L++P+ IEV ++TA+ + + T K+ AL+ Sbjct: 268 RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQ-VIYTVPDGHKQAALVHL 326 Query: 238 LLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q I+F N K L +LE++ + AIHG+ Q RM+ L FK+GT Sbjct: 327 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGT 386 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI + V NFD+P AE+Y+HRIGRTGRAG G A +L A D + Sbjct: 387 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 446 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 447 LLADIEKLIKRNL 459 >gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia thailandensis MSMB43] Length = 402 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 237/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R+ R R LIL PTRELAAQV ++ Y K L A++ GG+ Q Sbjct: 61 QRLHTFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKNSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|332286324|ref|YP_004418235.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7] gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7] Length = 477 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 163/370 (44%), Positives = 234/370 (63%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL+ ++ AV D GY PTPIQ + IP V+Q D+ AQTGTGKTA F LP+L Sbjct: 7 FASLGLAEPLLRAVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPILHR 66 Query: 63 LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + A+ R PR LIL PTREL AQV ++ Y K+ ++ ++ GG+ Q L Sbjct: 67 LLQNPAQGRKPGQPRVLILTPTRELTAQVEESVRTYSKHTSIRSMVMFGGVNINPQISAL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 127 RKPLDILVATPGRLLDHAQQKTVDLSAVEILVLDEADRMLDMGFIRDIRRILALLPKQRQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +S+ L +P I V ++ +E +E V T + + K LL ++ Sbjct: 187 NLLFSATFSDEIRALSKGVLNDPIEISVARRNTASELVEQSVVLT--EQAHKRDLLSHII 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L L K G S AIHGN Q +R + L+ FK+G + ++ Sbjct: 245 R-ESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFKDGKVAVL 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + HV NF++PN E+Y+HRIGRTGRAG G A +LV + +IK + A Sbjct: 304 VATDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSTGSAMSLVDRTEIKLLSA 363 Query: 360 IEKLIEKKVD 369 IEKLI++ ++ Sbjct: 364 IEKLIKRPIE 373 >gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 450 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 241/372 (64%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P+++ A+ + GYV+PTPIQ + IP VLQ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR--ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L K + A+ R P R LIL PTRELAAQ+ +N Y + N+ ++ GG+ Q Sbjct: 61 ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++N+EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDNVEILVLDEADRMLDMGFIHDIRRVLAKLPPR 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP +EV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEVEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IE+L++K++ Sbjct: 357 LRDIERLLKKEI 368 >gi|332525968|ref|ZP_08402109.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332109519|gb|EGJ10442.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 500 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 165/374 (44%), Positives = 242/374 (64%), Gaps = 10/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+DLGL+ ++ AV + GY PTPIQ + IP VLQ D+ AQTGTGKTA F LPML Sbjct: 1 MNFSDLGLAEPLLRAVREQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPML 60 Query: 61 TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L R R+ + R L+L PTRELAAQV ++ YGK LT ++ GG+ + Sbjct: 61 QRLSASKPVRDSRGRIAV-RALVLTPTRELAAQVEESVRAYGKYLPLTSMVMFGGVGMQP 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q +L +G D+L+ TPGR+LDH +G L ++ ++ILV+DEADRMLDMGFI I+ + +++ Sbjct: 120 QIDRLRKGVDILVATPGRLLDHHGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLAVL 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P +Q+LLFSAT +DE++ +++ L P IEV ++TA+TI + KK L Sbjct: 180 PQKKQSLLFSATFSDEIKALADRLLNQPALIEVARRNATADTIAQKVHPVGRE--KKKEL 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ D + ++F K L L +QG + AIHGN Q +R K L+ FK G Sbjct: 238 LAHLIRQGDWHQV-LVFTRMKHGANRLAEYLNEQGITAMAIHGNKSQGARTKALAEFKAG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 T+Q++VA+D+AARG+DI + HV N+++PN E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 297 TLQVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGASGEAVSLVCLDEE 356 Query: 355 KHIDAIEKLIEKKV 368 + I++LI++++ Sbjct: 357 IFLRDIQRLIKREI 370 >gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia R551-3] Length = 471 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 167/374 (44%), Positives = 238/374 (63%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PTPIQ + IPLVL D+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGRDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T ++ R R PR LIL PTRELA QV D+ Y K + A + GG+ Q Sbjct: 61 QHLGTASQEVRTGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L RG D+L+ PGR++DH R + ++ IE+LV+DEADRMLDMGF+P I+ I + +P Sbjct: 121 DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK 180 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT D +++++ F++NP++I+V ++ AETI H +K LL Sbjct: 181 QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDG--GRKRDLL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL +QD+ + ++F K L LEK G AIHGN Q R++ L +FK G Sbjct: 239 LHLL-AQDSREQTLVFARTKHGSDKLAAFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGR 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARG+DI ++ V NFD+P AE+Y+HRIGRTGR G G+A +LVA++++K Sbjct: 298 VTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVK 357 Query: 356 HIDAIEKLIEKKVD 369 + AI +L+ + +D Sbjct: 358 LLRAITRLLGRDMD 371 >gi|77917983|ref|YP_355798.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM 2380] gi|77544066|gb|ABA87628.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM 2380] Length = 435 Score = 312 bits (799), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 160/402 (39%), Positives = 246/402 (61%), Gaps = 9/402 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF++L L P+++ A+ D GY PTPIQ + +P L D+ A TGTGKTA+F+LP L Sbjct: 1 MDFSELKLDPRILKALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPAL 60 Query: 61 TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L AR + PR L+L PTRELA QV D YGK LT A+L+GG+P+ Q + L Sbjct: 61 QRLTVKIARRKGAPRMLVLAPTRELAGQVMDAARVYGKYLGLTTAVLLGGVPYRDQFRAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR+LDH R + ++ +E+LV+DEADRMLDMGF + + + P RQ Sbjct: 121 AKPLDLVVATPGRLLDHLQRRSIDLSCLEMLVLDEADRMLDMGFKEDVDKVCAAAPRQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQL 238 T++F+AT+ D +QK++ L +P RI++ + ++ IE H VA Q+ + LLQ L Sbjct: 181 TMMFTATLNDAMQKMARRLLDDPFRIDIAVVKNVSDHIEQHLHVADNRQHKNR--LLQHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ D + I+F K++ +L L QG+ A+HG+++Q +R + + + + G I++ Sbjct: 239 LKHSD-ISQAIVFSATKRDADSLARDLSAQGYRAAALHGDMNQGARNRTVRDLRRGRIRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HVFN+D+P AE+Y+HRIGRTGRAG G A + V+ ++ + Sbjct: 298 LVATDVAARGLDVAGISHVFNYDLPKFAEDYVHRIGRTGRAGATGVAISFVSGAEVSALR 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNP 398 I+ I +++ ++ L P PL + N P Sbjct: 358 RIQHFIGRELP--RREIPGLEPRFPLRAASAEGRRRYKGNGP 397 >gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92] gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92] Length = 427 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 164/367 (44%), Positives = 236/367 (64%), Gaps = 4/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L P++ + + GY +PTPIQ + IPLVL+ D+ AQTGTGKTASF LP++ Sbjct: 6 FAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPIIEK 65 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L K P R L+L PTRELA QVADN +YG++ + V + GG+P E Q K+L+R Sbjct: 66 LSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQIKRLKR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+L+ TPGR+LD + + + +E LV+DEADRMLD+GFI IQ I RQTL Sbjct: 126 GTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LF+AT + ++ ++E +L NP +I+V +STA+ I A Y +K +L L+ + Sbjct: 186 LFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQ--FAYQVDYGQKADILSYLI-T 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++F KK V L L K+G + AIHG QR R+++L+ F G + ++VA Sbjct: 243 EGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + +V N+D+PN+ E Y+HRIGRTGRAG G+A +LVA + + + IE Sbjct: 303 TDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRIE 362 Query: 362 KLIEKKV 368 KLI++K+ Sbjct: 363 KLIKQKI 369 >gi|119384480|ref|YP_915536.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus denitrificans PD1222] gi|119374247|gb|ABL69840.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans PD1222] Length = 479 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 162/374 (43%), Positives = 233/374 (62%), Gaps = 5/374 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +G+ +V + G P+PIQ K+IP ++ D+ G+AQTGTGKTA+F LPMLT Sbjct: 69 FTRMGIDARVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPMLTR 128 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L GR R R LIL PTRELA Q+A+N + Y + ++GG Q ++LE Sbjct: 129 LLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASINVQVQRLE 188 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVLI TPGR++D RG + ++ LV+DEAD+MLD+GFI ++ I ++P RQT Sbjct: 189 RGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKMLPRERQT 248 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++++++L +P R+ VN P AE I+ + K LL + L Sbjct: 249 LLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGV--HFVNQGDKATLLAEYL- 305 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+ + I+F K LC L+K GF V AIHGN Q R + L++F+ G +++V Sbjct: 306 SKHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVLV 365 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP V HV+N+D+PN ENY+HRIGRT RAGR G+A + +I + AI Sbjct: 366 ATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRAI 425 Query: 361 EKLIEKKVDWLNGD 374 EK ++ K+ + G+ Sbjct: 426 EKAMKAKIAVVGGE 439 >gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis DSM 9187] gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 489 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 163/367 (44%), Positives = 235/367 (64%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS ++ AV D GY P+PIQ++ IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFTELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G AR R L+L PTRELAAQVA++ YGK L ++ GG+ Q + Sbjct: 61 HRLSRGNPARSNAVRALVLTPTRELAAQVAESVTTYGKYLPLKSVVVFGGVNINPQMLAM 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GADVL+ TPGR+LD ++ L +E+L++DEADRMLDMGFI I+ I +++P RQ Sbjct: 121 RKGADVLVATPGRLLDLVSQNALHFRQLEVLILDEADRMLDMGFIRDIRKIINMLPKDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT +DE++ +++ L P +I+V ++TAETI+ +K ALL L+ Sbjct: 181 TLMFSATFSDEIRTLAKGLLNEPVQIDVAPRNTTAETIKQTICPV--DKGRKPALLCHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K L LE G AIHGN Q +R + LS FK+G+++++ Sbjct: 239 K-HNNWQQVLVFMRTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N+++PN AE+Y+HRIGRTGRAG G A +LV+ ++ + Sbjct: 298 VATDIAARGIDIAQLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLVSADEQPLLVD 357 Query: 360 IEKLIEK 366 +EKLI++ Sbjct: 358 VEKLIKQ 364 >gi|224369411|ref|YP_002603575.1| RhlE2 [Desulfobacterium autotrophicum HRM2] gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2] Length = 460 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 161/370 (43%), Positives = 235/370 (63%), Gaps = 6/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL +++ AV GY++PTPIQI+ IP +L D+ AQTGTGKT +F LP++ Sbjct: 1 MSFEELGLRAELIKAVKTKGYIEPTPIQIRVIPAILNGQDILARAQTGTGKTDAFALPIV 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL +G+A R PR L+L PTRELA QV ++ + Y + +L ++ GG+ Q +L+ Sbjct: 61 EILARGKAHRRHPRALVLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQIDRLK 120 Query: 121 RGADVLICTPGRILD--HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 RG D+L+ TPGR+LD FNR + ++ IE LV DEADRMLD+GF I I LVP R Sbjct: 121 RGVDILVATPGRLLDLAAFNR-DVKLSKIEFLVFDEADRMLDLGFSDEISQILELVPQDR 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +T+LFSAT T +++ +++ L+ P++IEV ++ AE+I + S K LL L Sbjct: 180 RTMLFSATYTRQIRDLADKMLKTPEQIEVTPNTTVAESIVQKV--HLVEKSNKRELLIHL 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + D + ++F K L L + S A+HGN Q R + L FK G I++ Sbjct: 238 ITRSD-WRQVLVFTRTKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQEFKNGEIRI 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV N+D+P+ AE+Y+HRIGRTGRAG G A +LV+KE+ + Sbjct: 297 LVATDVAARGLDITGLPHVVNYDMPSVAEDYVHRIGRTGRAGIQGVAVSLVSKEEKVFLK 356 Query: 359 AIEKLIEKKV 368 ++E L+E+K+ Sbjct: 357 SVESLLEQKI 366 >gi|300705099|ref|YP_003746702.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CFBP2957] gi|299072763|emb|CBJ44116.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CFBP2957] Length = 547 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 240/376 (63%), Gaps = 11/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY +PTPIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L + +V P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 61 HRLSAAQPNKVHTPHGMRYPVRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L+RG D+++ TPGR+LDH + + +++IE+LV+DEADRMLDMGFI I+ I + Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +D+++ +++ L P IEV ++TAET+E +K Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 238 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L++ D + ++F K L L + G S AIHGN Q +R + LS FK Sbjct: 239 ELLAKLVRDNDWHQV-LVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 297 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT++++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV + Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357 Query: 353 DIKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 358 EHGLLRDIERLIKREL 373 >gi|156976669|ref|YP_001447575.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116] gi|156528263|gb|ABU73348.1| hypothetical protein VIBHAR_05443 [Vibrio harveyi ATCC BAA-1116] Length = 430 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 167/408 (40%), Positives = 250/408 (61%), Gaps = 15/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P+VV A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LPM+ Sbjct: 1 MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LE GR+ R R LI+ PTRELA Q+ADN + Y K +L+VA + GG +Q Sbjct: 61 QQLLESGRSASRKTARALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H +G + + +IE LV DEADR+LDMGFI ++ I V Sbjct: 121 LEGGVDILVATPGRLEEHIEQGNVSVASIEFLVFDEADRILDMGFIHAVRKIMMDVDTDP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++++ L+ PKRIEV ++TA+TI H +K LL +L Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTIAHVLYPV--DQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + K ++F N K+ ++ L+ G HG+ Q +R + L FK G ++ Sbjct: 239 I-GRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398 +E LI++++ + +L+ P +EK++ ++ R+NNP Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403 >gi|190572660|ref|YP_001970505.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia K279a] gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia K279a] Length = 470 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 167/374 (44%), Positives = 239/374 (63%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PTPIQ + IPL L D+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T ++ R+ R PR LIL PTRELA QV D+ Y K + A + GG+ Q Sbjct: 61 QHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L RG D+L+ PGR++DH R + ++ IE+LV+DEADRMLDMGF+P I+ I + +P Sbjct: 121 DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK 180 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT D +++++ F++NP++I+V ++ AETI H A +K LL Sbjct: 181 QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDA--GRKRDLL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL +QD+ + ++F K L LEK G AIHGN Q R++ L +FK G Sbjct: 239 LHLL-AQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGR 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARG+DI ++ V NFD+P AE+Y+HRIGRTGR G G+A +LVA++++K Sbjct: 298 VTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVK 357 Query: 356 HIDAIEKLIEKKVD 369 + AI +L+ + +D Sbjct: 358 LLRAIVRLLGRDMD 371 >gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta DSM 2243] gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243] Length = 508 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 228/370 (61%), Gaps = 3/370 (0%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FADLGLS + AV GY PTP+Q++ IPLVL+ D+ A TGTGKTA+F+LP+L+ Sbjct: 3 NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L +G+ R PR L++ PTRELA Q++ + + V + GG P+ Q ++ R Sbjct: 63 TLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+ D N+G + + I+ LV+DEADRMLDMGF+P + I P RQTL Sbjct: 123 GTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ +QK + L +P +E+ TA+T+E F+ A + KK LLQ LL+ Sbjct: 183 LFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQ-FMMPIANF-KKPELLQALLEE 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + + I+F K + +L G+ +IH + Q R + L NF+ G ++VA Sbjct: 241 KGSDRV-IVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARG+D+PDV HV NFD+P+ E+Y+HRIGRTGRAG G A + V +E + + IE Sbjct: 300 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIE 359 Query: 362 KLIEKKVDWL 371 KLI K V + Sbjct: 360 KLIGKNVPLM 369 >gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 451 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 239/372 (64%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ AV + GYV+PTPIQ + IP VLQ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQV +N Y K N+ ++ GG+ Q Sbjct: 61 QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++E L NP +EV ++ +E I +H + ++K LL Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL+ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IE+L++K++ Sbjct: 357 LRDIERLLKKEI 368 >gi|269963602|ref|ZP_06177925.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831615|gb|EEZ85751.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 430 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 167/408 (40%), Positives = 249/408 (61%), Gaps = 15/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P+VV A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LPM+ Sbjct: 1 MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARRGHDIFATAQTGTGKTAAFSLPMI 60 Query: 61 T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ GR A + R LI+ PTRELA Q+ADN + Y K NL+VA + GG +Q Sbjct: 61 QRLLDSGRNASRKTARALIMAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMPSQISA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H +G + + NIE LV DEADR+LDMGFI ++ I V Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVDTDP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++ + L+ PKRIEV ++TA+T+ H +K LL +L Sbjct: 181 QIMMFSATTSTQLNVLARDILRKPKRIEVERANTTAQTVAHVLYPV--DQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + K ++F N K+ ++ L+ G HG+ Q +R + L FK G +++ Sbjct: 239 I-GRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398 +E LI++ + + +L+ P +EK++ ++ R+NNP Sbjct: 358 QVENLIQQHIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403 >gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales bacterium ALC-1] gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales bacterium ALC-1] Length = 436 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 161/370 (43%), Positives = 239/370 (64%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ GY P+PIQ K IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFKSLGLSEPLLRAISKKGYETPSPIQAKAIPPVLEEKDVLASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + + P R LIL PTRELAAQV N ++Y + N+ ++ GG+ + Q + Sbjct: 61 HLLSQRPVQKHRPIRALILTPTRELAAQVHTNVKEYSEFLNIKSTVIFGGVNQKPQVATI 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVL+ TPGR++D ++G L + +EI V+DEADRMLDMGF+ I+ + L+P RQ Sbjct: 121 RKGVDVLVATPGRLIDLESQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT + +++K++ + L NP ++E TP +TA + V A+ KK L+ +L+ Sbjct: 181 NLMFSATFSKDIKKLAYSILNNPVKVEA-TPENTAVEVIDQKVYRVAK-GKKTGLIIKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ K ++F K LC + G + AIHGN Q +R K L+ FK G ++++ Sbjct: 239 -SEGNWKQVLVFTRTKHGANKLCKKMISAGITAAAIHGNKSQGARTKALAGFKSGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP + HV N+++PN +E+Y+HRIGRTGRAG G+A +LV+ ++ ++ + Sbjct: 298 VATDIAARGLDIPLLPHVVNYEIPNISEDYVHRIGRTGRAGASGEAISLVSADETTYLRS 357 Query: 360 IEKLIEKKVD 369 IEKLI+ K++ Sbjct: 358 IEKLIDMKIE 367 >gi|293602831|ref|ZP_06685270.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC 43553] gi|292818625|gb|EFF77667.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC 43553] Length = 414 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 164/370 (44%), Positives = 234/370 (63%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GY PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L + Sbjct: 7 FADLGLADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHL 66 Query: 63 LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + R PR LIL PTREL AQVA++ + YGK +LT ++ GG+ Q L Sbjct: 67 LMQQKPEARKPGRPRCLILTPTRELTAQVAESVQTYGKYTSLTSMVMFGGVNINPQISAL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 127 RKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ ++ L NP + V TP +TA + V Q+ K+ L+ ++ Sbjct: 187 NLLFSATFSDEIRTLARGVLNNPGEVSV-TPRNTATELVTQTVHMVEQHHKR-DLISHII 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L L K G + AIHGN Q +R + L+ FK+ T+ ++ Sbjct: 245 R-ESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVL 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV +IK + Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKD 363 Query: 360 IEKLIEKKVD 369 IE+LI+K ++ Sbjct: 364 IERLIKKTIE 373 >gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA] gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA] Length = 509 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 228/370 (61%), Gaps = 3/370 (0%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FADLGLS + AV GY PTP+Q++ IPLVL+ D+ A TGTGKTA+F+LP+L+ Sbjct: 3 NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L +G+ R PR L++ PTRELA Q++ + + V + GG P+ Q ++ R Sbjct: 63 TLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+ D N+G + + I+ LV+DEADRMLDMGF+P + I P RQTL Sbjct: 123 GTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ +QK + L +P +E+ TA+T+E F+ A + KK LLQ LL+ Sbjct: 183 LFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQ-FMMPIANF-KKPELLQALLEE 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + + I+F K + +L G+ +IH + Q R + L NF+ G ++VA Sbjct: 241 KGSDRV-IVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARG+D+PDV HV NFD+P+ E+Y+HRIGRTGRAG G A + V +E + + IE Sbjct: 300 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIE 359 Query: 362 KLIEKKVDWL 371 KLI K V + Sbjct: 360 KLIGKNVPLM 369 >gi|207742395|ref|YP_002258787.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] gi|206593785|emb|CAQ60712.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] Length = 545 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 240/376 (63%), Gaps = 11/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY +PTPIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L + +V P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 61 HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L+RG D+++ TPGR+LDH + + +++IE+LV+DEADRMLDMGFI I+ I + Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +D+++ +++ L P IEV ++TAET+E +K Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 238 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L++ D + ++F K L L + G S AIHGN Q +R + LS FK Sbjct: 239 ELLAKLVRDNDWHQV-LVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 297 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT++++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV + Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357 Query: 353 DIKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 358 EHGLLRDIERLIKREL 373 >gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473] gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473] Length = 453 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 164/374 (43%), Positives = 240/374 (64%), Gaps = 12/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ A+ + GY+ PTPIQ + IP+VLQ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 IL KGR R R LIL PTRELAAQ+ +N E+Y K L ++ GG+ Sbjct: 61 QILNENAQPIKGR---RPVRALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQITQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ SQ+ + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMIGSQN-WQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCIDEH 354 Query: 355 KHIDAIEKLIEKKV 368 K + IE+L+++++ Sbjct: 355 KLLRDIERLLKREI 368 >gi|27366822|ref|NP_762349.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6] gi|320158706|ref|YP_004191084.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O] gi|27358389|gb|AAO07339.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6] gi|319934018|gb|ADV88881.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O] Length = 427 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 161/382 (42%), Positives = 238/382 (62%), Gaps = 7/382 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA G +P+VV A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFASQGFAPEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLI 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LE G++ R R LI PTRELA Q+ADN + Y K NL+VA + GG +Q + Sbjct: 61 QQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERM 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H G + + NIE LV DEADR+LDMGFI ++ I V Sbjct: 121 LENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++S++ L+ PKRI V ++TA T+ H +K LL +L Sbjct: 181 QIMMFSATTSSQLNELSKDILRKPKRIAVERENTTAHTVAHVLYPV--DQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ ++ L+ G HG+ Q +R + L FKEG +++ Sbjct: 239 I-GRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380 +E LI++++ + +L+ P Sbjct: 358 QVENLIQQRIRRI--ELAGYEP 377 >gi|206579391|ref|YP_002239559.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae 342] gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55] gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae 342] gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55] Length = 451 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 241/372 (64%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ AV + GYV+PTPIQ + IP V+Q D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ A+ R P R LIL PTRELAAQV +N Y K N+ ++ GG+ Q Sbjct: 61 QRLIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++E L NP +EV ++ +E I +H + ++K LL Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL+ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IE+L++K++ Sbjct: 357 LRDIERLLKKEI 368 >gi|77918185|ref|YP_356000.1| DNA/RNA helicase [Pelobacter carbinolicus DSM 2380] gi|77544268|gb|ABA87830.1| DNA/RNA helicase, ATP-dependent, DEAD-box family [Pelobacter carbinolicus DSM 2380] Length = 432 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 164/408 (40%), Positives = 252/408 (61%), Gaps = 13/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F P+V ++ AGYV PTPIQ + IP V+ DV G+AQTGTGKTA+F LP+L Sbjct: 1 MEFNSFNFHPQVAKGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R R+R L++ PTRELA Q+ + G++ L + GG+ Q L Sbjct: 61 QRLIDGPRGRLR---ALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG D+++ PGR++DH + + ++NIE+LV+DEAD+M DMGF P ++ I VP RQ Sbjct: 118 KRGVDIVVACPGRLIDHIGQKTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++++S L +P ++V ++ AET+ H AQ+ +K A+L +LL Sbjct: 178 TLLFSATMPAAIRRLSGEVLTSPMTVQVGN-TTPAETVSHALYPV-AQH-QKTAMLLELL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D+ ++ ++F K L L K G+ ++ GN+ Q R + L+ F++G +++ Sbjct: 235 SAVDS-RSVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV N+D+P+ AE Y+HRIGRTGRA R G+AFTLV ED + A Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLVTGEDNAMVRA 353 Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404 IEK+++ ++ + G D ++ PP + D A +A + +P +S+ Sbjct: 354 IEKVLDASLERRTIEGFDYNTPAPP--RTDRAGRGNASRRSPRTTRSS 399 >gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] Length = 432 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 168/395 (42%), Positives = 244/395 (61%), Gaps = 23/395 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L+P ++ A+ +AGYVKPTPIQ ++IPL+L+ D+ G+AQTGTGKTASF LP+L Sbjct: 9 FADLALAPTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALPLLHR 68 Query: 63 LE-------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L K ARV L+L PTREL +Q+AD FE + ++ + V + GG+ Q Sbjct: 69 LAATPRPAPKNGARV-----LVLAPTRELVSQIADGFESFSRHQPVRVTTIFGGVSQVHQ 123 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K LE G D+++ PGR+LD +G ++ +E LV+DEAD+MLDMGF I+ I + +P Sbjct: 124 VKALEEGVDIIVAAPGRLLDLIEQGLCDLSQLETLVLDEADQMLDMGFAKPIERIVATLP 183 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R T+LFSATM + + E+ L+NP ++E+ PSST + I + A KK ALL Sbjct: 184 EDRHTVLFSATMPKSIAALVESLLRNPAKVEIAPPSSTVDRIAQSVMFLNAS-DKKAALL 242 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 QL + ++F QK ++C L + G + A+HGN Q R + L+ F+EG Sbjct: 243 AQL--RTPGIGQAVVFTLQKNIANDVCTFLTESGITAEALHGNRSQGQRERALNAFREGD 300 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+D+ V HV N D+P+ E+Y+HRIGRTGRAGR G A TL E Sbjct: 301 VQVLVATDIAARGIDVDTVTHVINHDLPSLPESYVHRIGRTGRAGRSGFAITLCDAEQRA 360 Query: 356 HIDAIEKLIEKKVD------WLNGDL--SSLNPPL 382 + A+E+ I + +D W + + S++ PP+ Sbjct: 361 WLHAVEREIGRTLDVHDSHEWHSEEARNSTMRPPV 395 >gi|83746106|ref|ZP_00943161.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551] gi|83727289|gb|EAP74412.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551] Length = 603 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 239/376 (63%), Gaps = 11/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY +PTPIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 59 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 118 Query: 61 TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L + +V P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 119 HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 178 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L+RG D+++ TPGR+LDH + + +++IE+LV+DEADRMLDMGFI I+ I + Sbjct: 179 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 238 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +D+++ +++ L P IEV ++TAET+E +K Sbjct: 239 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 296 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L++ D ++F K L L + G S AIHGN Q +R + LS FK Sbjct: 297 ELLAKLVRDND-WHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFK 355 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT++++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV + Sbjct: 356 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 415 Query: 353 DIKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 416 EHGLLRDIERLIKREL 431 >gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22] gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22] Length = 451 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 241/372 (64%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ AV + GYV+PTPIQ + IP V+Q D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ A+ R P R LIL PTRELAAQV +N Y K N+ ++ GG+ Q Sbjct: 61 QRLIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++E L NP +EV ++ +E I +H + ++K LL Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL+ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IE+L++K++ Sbjct: 357 LRDIERLLKKEI 368 >gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida subsp. salmonicida A449] Length = 417 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 172/402 (42%), Positives = 244/402 (60%), Gaps = 11/402 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L LSP++ + + GY PTPIQ + IP++L D+ AQTGTGKTA+FVLP+L Sbjct: 6 FAELALSPRLQQTLSELGYAAPTPIQARAIPVILTGRDLMAGAQTGTGKTAAFVLPLLEQ 65 Query: 63 LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + A R R L+L PTRELA QV D+ +YG+ LT AL+ GG+ AQ + L+ Sbjct: 66 LMQHPASDTARPIRALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQVEALQ 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+LDH +G L + ++ LV DEADRMLDMGF+ I+ + +P RQT Sbjct: 126 AGVDLLIATPGRLLDHLRQGALSLEHLSHLVFDEADRMLDMGFMDEIKALLKQIPADRQT 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT D L +S L++P+ IEV ++TA +E A + +K AL++ L++ Sbjct: 186 LLFSATCDDNLFALSRVLLRDPELIEVAPRNTTAAEVEQRVYAVDGE--RKVALVEHLIK 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF ++ L L K G + A HG++ Q +R K+L F+ GT+Q +V Sbjct: 244 VKGWAPV-LIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLAFRAGTLQALV 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI D+ +V N + P AE+Y+HRIGRTGRAG G A TL + ED ++ + Sbjct: 303 ATDVAARGLDILDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKV 362 Query: 361 EKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKN 396 E +++ ++ W G DL+ P P AQ ARK Sbjct: 363 EAVLDTRLPQQWFPGFEPDLTRFEPEPRRSGKAAQKQRARKQ 404 >gi|260459532|ref|ZP_05807787.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum WSM2075] gi|259035086|gb|EEW36342.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum WSM2075] Length = 477 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/396 (41%), Positives = 247/396 (62%), Gaps = 13/396 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA LG++ ++ A +AG+ +P PIQ++ IP L+ D+ GIAQTG+GKTA+F LP+L+ Sbjct: 22 FAALGVTGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSK 81 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ D + K +++ AL++GG+ +Q KK+ Sbjct: 82 IIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVA 141 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+ D G L++++ + LV+DE DRMLDMGFI ++ I RQT Sbjct: 142 PGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM DE+ ++++ L+NP RIEV+ S+ A I V +A+ +K +L +L Sbjct: 202 ALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQGVV--FARTKQKRQVLSTML- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + MK+ IIF K + LE+ GF IHGN Q +R K L++F++G+++++V Sbjct: 259 ADAAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILV 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G G A TL + + + Sbjct: 319 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQV 378 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396 E++I K+ + L S +P Q N A KN Sbjct: 379 ERIIRTKLPIVADHLGSPDP--------QRNPAEKN 406 >gi|187927522|ref|YP_001898009.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12J] gi|187724412|gb|ACD25577.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J] Length = 560 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 163/376 (43%), Positives = 240/376 (63%), Gaps = 11/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY +PTPIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L + +V+ P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 61 HRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L+RG D+++ TPGR+LDH + + +++IE+LV+DEADRMLDMGFI I+ I + Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +D+++++++ L P IEV ++TAET+E +K Sbjct: 181 ILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPV--DRERKR 238 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L++ D ++F K L L + G AIHGN Q +R + L+ FK Sbjct: 239 ELLAKLVRDND-WHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFK 297 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT++++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV + Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357 Query: 353 DIKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 358 EHGLLRDIERLIKREL 373 >gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1] gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene) [Bradyrhizobium sp. BTAi1] Length = 469 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/366 (45%), Positives = 226/366 (61%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+ + A+ + Y PTPIQ +TIP+ LQ DV GIAQTGTGKTASF LP+L Sbjct: 4 FQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILHR 63 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R + + R L+L PTREL+ Q+ D+F YG++ LT AL IGG+P Q + L Sbjct: 64 LLENRIKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLTSALAIGGVPMGRQVRALM 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR+LD L + +E LV+DEADRMLDMGFI I+ I + +P RQT Sbjct: 124 PGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ ++++ L++P R+ V SST E I + +S K +LL QLL+ Sbjct: 184 LFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERITQRVI--QVDHSAKPSLLAQLLK 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++F K + LEK G AIHGN Q R + L+ F+ G I+ +V Sbjct: 242 DE-PVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKHIDA 359 A+D+AARG+D+ V HV NFD+PN E Y+HRIGRT RAG G A +LVA D + ++ Sbjct: 301 ATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADELSYLRD 360 Query: 360 IEKLIE 365 IE+L + Sbjct: 361 IERLTK 366 >gi|253990397|ref|YP_003041753.1| ATP-dependent RNA helicase RhlE [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781847|emb|CAQ85010.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica] Length = 444 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 177/425 (41%), Positives = 254/425 (59%), Gaps = 16/425 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++CA+ + GY PTPIQ + IP+VL D+ AQTGTGKTA F LPML Sbjct: 1 MSFESLGLDADILCAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQV +N Y K L ++ GG+ Sbjct: 61 QLLNNSPVQTKGR---RPVRALILTPTRELAAQVGENVRNYSKYLRLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV +S +E IE FV + +K L Sbjct: 178 PPKRQNLLFSATFSDEIKNLASKLLHNPVSVEVARRNSASEQIEQ-FV-HFVDKKRKGEL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ S++ + ++F K L L K G + AIHGN Q +R + L++FKEG Sbjct: 236 LSFLIGSRN-WQQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKEG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + +V NF++PN +E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 295 RIRVLVATDIAARGLDIDQLPYVVNFELPNVSEDYVHRIGRTGRADATGQALSLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 K + IE+L+++++ + +P ++ I AR +N + RR S Sbjct: 355 KLLKDIERLLKREIPRVAIPGYDPDPTIKAEPIQNGRQARGDN----RQKNSHRRSGAPS 410 Query: 415 SQKSH 419 Q+SH Sbjct: 411 RQRSH 415 >gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1] gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1] Length = 521 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 162/395 (41%), Positives = 246/395 (62%), Gaps = 14/395 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + GLSP+++ AV GY + TPIQ KTIPL++Q DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ +++ L++ PTRELA Q + K G + ++ ++ GG Q L+ Sbjct: 61 EEVDPKNPQIQ---ALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR++DH NR + ++ LVIDEAD ML+MGF+ I+ I P RQT Sbjct: 118 EHPQILVGTPGRLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D+++K+ F+++P+ + + + T + ++ V T +Y K A+ + Sbjct: 178 LLFSATMPDDIKKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNT-REYEKFDAMTRLFDV 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F K+ V L +L+ +G+ IHG++DQ +RM+ L +FK+G +Q +V Sbjct: 237 EQPEL--AIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+DVP E+Y+HRIGRTGRAG HG + T V + +I ++ AI Sbjct: 295 ATDVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHAR 394 EKLI K+ +++L PP E+ IA+ +A+ Sbjct: 355 EKLINKR-------MAALKPPSAEEAHIARLKNAK 382 >gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N] gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N] Length = 477 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 167/399 (41%), Positives = 245/399 (61%), Gaps = 16/399 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FAD GL P ++ ++ + GY PTPIQ + IP+V + DV G AQTGTGKTA+F LP+L Sbjct: 15 LTFADFGLHPLLLKSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGKTAAFTLPIL 74 Query: 61 ----TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + R P R LIL PTRELA QV +N ++Y + L A++ GG+ Q Sbjct: 75 HRLMPLANSSASPARHPVRALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQ 134 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +G +VL+ TPGR+LDH + + ++ + ILV+DEADRMLDMGF+P ++ I L+P Sbjct: 135 KEALRQGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLP 194 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT ++E++K+ ++L P IEV ++TA+T+ +A K A + Sbjct: 195 PQRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATADTVTQ--IAYQMTGEAKRAAV 252 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++S+ +K I+F N K L LE G +IHG+ Q RMK L FK G Sbjct: 253 VHLVKSRG-LKQVIVFSNTKIGTARLARQLELDGVKAESIHGDKSQADRMKALEAFKAGE 311 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGLD+ V V N+D+P AE+Y+HRIGRTGRAG G+A L E+ + Sbjct: 312 LEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEER 371 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 ++ IEKLI+++V D+ S ++ H+H R Sbjct: 372 YLLDIEKLIKRQVPRGKLDIPS--------ELLAHSHGR 402 >gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1] gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1] Length = 560 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 228/370 (61%), Gaps = 3/370 (0%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FADLGLS + AV GY PTP+Q++ IPLVL+ D+ A TGTGKTA+F+LP+L+ Sbjct: 55 NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 114 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L +G+ R PR L++ PTRELA Q++ + + V + GG P+ Q ++ R Sbjct: 115 TLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRR 174 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR+ D N+G + + I+ LV+DEADRMLDMGF+P + I P RQTL Sbjct: 175 GTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTL 234 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ +QK + L +P +E+ TA+T+E F+ A + KK LLQ LL+ Sbjct: 235 LFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQ-FMMPIANF-KKPELLQALLEE 292 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + + I+F K + +L G+ +IH + Q R + L NF+ G ++VA Sbjct: 293 KGSDRV-IVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVA 351 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARG+D+PDV HV NFD+P+ E+Y+HRIGRTGRAG G A + V +E + + IE Sbjct: 352 TDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIE 411 Query: 362 KLIEKKVDWL 371 KLI K V + Sbjct: 412 KLIGKNVPLM 421 >gi|171463886|ref|YP_001797999.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193424|gb|ACB44385.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 479 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 239/376 (63%), Gaps = 8/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FAD GL P++ AV + GY PTPIQ ++IP VL +D+ G AQTGTGKTA+FVLP++ Sbjct: 31 ITFADFGLDPQIQKAVAEQGYNTPTPIQAQSIPHVLAGNDLMGAAQTGTGKTAAFVLPII 90 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + + P R L+L PTRELA QVA+N Y K+ +L A++ GG+ + Q Sbjct: 91 QKILRHASNSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQ 150 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L G ++LI T GR+LDH ++ +EILV+DEADRMLDMGF+P +Q I SL+P Sbjct: 151 VAILRNGVEILIATLGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIISLIP 210 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT + E++K+++++L++P +EV ++ A+T++ V + K+ A++ Sbjct: 211 AQRQTLLFSATFSPEIKKLAQSYLRSPVTVEVARQNAAADTVKQV-VHMVSSADKQRAIV 269 Query: 236 QQLLQSQDT--MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 + L + IIF N + L +LE+ G AIHG+ Q R L FK Sbjct: 270 KVLEARARAGLSRQCIIFTNSRLGCAKLSRTLERDGIKAGAIHGDKGQGERTLTLDAFKS 329 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I+ +VA+D+AARGLDIPD+ V N ++P AE++IHRIGRTGRAG G A LV + Sbjct: 330 GAIEALVATDVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDLSE 389 Query: 354 IKHIDAIEKLIEKKVD 369 + +D IEKL+++K+D Sbjct: 390 KRLLDDIEKLMKRKLD 405 >gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118] gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118] Length = 574 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 160/374 (42%), Positives = 240/374 (64%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AVL+ GY PTPIQ + IP VL HD+ G AQTGTGKTA+FVLPML Sbjct: 1 MKFEELNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPML 60 Query: 61 TILEKGRA-RVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + A R + R L+L PTRELAAQV ++ + YGK LT ++ GG+ Q Sbjct: 61 HKLSQSEAARNKFGGIGIRALVLTPTRELAAQVEESVQTYGKYVELTSTVIFGGVGMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++++G D+L+ TPGR+LD +G L ++ ++ILV+DEADRMLDMGFI ++ + ++VP Sbjct: 121 ISRVKKGVDILVATPGRLLDLLQQGVLDLSQVQILVLDEADRMLDMGFIHDVKKVLAVVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT ++E+++++ L++P I+V ++T + I KK ALL Sbjct: 181 KDKQSLLFSATFSEEIRELAATLLKSPLTIQVTPRNTTVQRITQLI--HPVGRGKKKALL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++Q ++ ++F K N+ L K G + A+HGN Q +R + L+ FK G Sbjct: 239 AHIVQERN-WSQVLVFTRTKFGANNVAEFLTKSGINAMALHGNKSQAARTQALAGFKSGD 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI D+ HV N+D+PN E+Y+HRIGRTGRAG G A LV ++ Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYDIPNVCEDYVHRIGRTGRAGADGAAVNLVCLDEEG 357 Query: 356 HIDAIEKLIEKKVD 369 + AIE+ ++ ++ Sbjct: 358 FMQAIERFTKQDIE 371 >gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB 48] gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB 48] Length = 605 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS ++ + GY PTPIQ + IP++L +HD+ GIAQTGTGKTA+F LP+L Sbjct: 4 FKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPILHH 63 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R R R L+L PTRELA Q+AD+F+ Y K L +A + GG+ + Q K L+ Sbjct: 64 ILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYKALQ 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR++DH + + + +E LV+DEAD+MLDMGFI I+ + S +P RQ Sbjct: 124 GGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQRQN 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ ++ L NPK++E+ ++TAE + + + + +K ALL +L Sbjct: 184 LFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVI--FIEQQRKRALLSELY- 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + +IF K+ + L+ G AIHG+ +Q R + L FK G ++ +V Sbjct: 241 ADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRALV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N+++P AE Y+HRIGRT RAG+ G + TLVA ++ K + I Sbjct: 301 ATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLKDI 360 Query: 361 EKLIEKKV-DW 370 E++ +++ W Sbjct: 361 ERITRQRIPSW 371 >gi|317492534|ref|ZP_07950962.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919526|gb|EFV40857.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 465 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 164/371 (44%), Positives = 240/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +++ AV + GY +PTPIQ + IP+VLQR D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDTLGLSAELLRAVEEQGYREPTPIQSQAIPVVLQRRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR--ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 IL + A+ R P R LIL PTRELAAQ+ +N Y K NL ++ GG+ Q Sbjct: 61 QILSQDTQPAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQHAVDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE+++++ L NP +EV ++ +E + + +K LL Q Sbjct: 181 RQNLLFSATFSDEIKELANKLLTNPASVEVARRNTASEQVAQSV--HFVDKRRKRELLSQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + + + ++F K +L L K G + AIHGN Q +R + L++FK G+I+ Sbjct: 239 LIGTHN-WQQVLVFTRTKYGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGSIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRA G+A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAECTGEALSLVCVDEHKLL 357 Query: 358 DAIEKLIEKKV 368 IE+L+++++ Sbjct: 358 RDIERLLKREI 368 >gi|270260820|ref|ZP_06189093.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13] gi|270044304|gb|EFA17395.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13] Length = 452 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 164/374 (43%), Positives = 239/374 (63%), Gaps = 12/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +++ AV + GY +PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L K GR R R LIL PTRELAAQ+ +N E Y K+ L ++ GG+ Sbjct: 61 QLLSKHDHPIKGR---RPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +D+++ ++ L NP +EV ++ +E IE + +K L Sbjct: 178 PAKRQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSV--HFVDKKRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ D K ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMIGEGD-WKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKV 368 K + IE+L+++++ Sbjct: 355 KLLRDIERLLKREI 368 >gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 519 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 239/372 (64%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ AV + GYV+PTPIQ + IP VLQ D+ AQTGTGKTA F LP+L Sbjct: 69 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 128 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQV +N Y K N+ ++ GG+ Q Sbjct: 129 QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 188 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 189 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 248 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++E L NP +EV ++ +E I +H + ++K LL Sbjct: 249 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 305 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL+ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 306 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 364 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 365 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 424 Query: 357 IDAIEKLIEKKV 368 + IE+L++K++ Sbjct: 425 LRDIERLLKKEI 436 >gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2080] gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2080] Length = 437 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 159/366 (43%), Positives = 234/366 (63%), Gaps = 4/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ AV D GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG+ A+ R L+L PTRELAAQVA++ + YGK NL A++ GG+ Q +L Sbjct: 61 HGLSKGQPAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+LI TPGR+LD + + + +E+L++DEADRMLDMGFI I+ I +P RQ Sbjct: 121 RKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +++++ +++ + NP I V +STA ++ ++K LL +L+ Sbjct: 181 NLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPV--DKNQKRHLLVELI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + ++F K+ L L+K+G AIHGN Q +R + LS FK G ++++ Sbjct: 239 -NQHNWEQVLVFSRTKRGANRLAEFLDKKGIQAAAIHGNKSQGARTRALSEFKSGKLRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N D+P A++Y+HRIGRTGRAG G+A +LV+ ++ + + Sbjct: 298 VATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQD 357 Query: 360 IEKLIE 365 IE+LI+ Sbjct: 358 IERLIQ 363 >gi|91785132|ref|YP_560338.1| putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400] gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400] Length = 543 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 167/373 (44%), Positives = 232/373 (62%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 23 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 82 Query: 61 TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L A R R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 83 QRLNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 142 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L G D+++ TPGR+LDH + + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 143 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 202 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT +DE++ +++N L +P IEV ++TAET+ KK LL Sbjct: 203 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPV--DRDKKRELL 260 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK+GT Sbjct: 261 THLIKQHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 319 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+DI + HV N+D+PN E+Y+HRIGRTGRAG G+A +LV ++++ Sbjct: 320 LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 379 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ V Sbjct: 380 LLKDIEKLIKRPV 392 >gi|260576594|ref|ZP_05844582.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] gi|259021198|gb|EEW24506.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] Length = 453 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 163/388 (42%), Positives = 238/388 (61%), Gaps = 10/388 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F LGLSPK+ + AGY KPTPIQ++ IPL++Q D+ G+AQTGTGKTA+F LP+L Sbjct: 4 FDSLGLSPKLAKGLEKAGYTKPTPIQLQAIPLIMQGRDLMGLAQTGTGKTAAFGLPLLHR 63 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ G R R LI+ PTREL +Q+++ E + K + V + GG Q+++L Sbjct: 64 LLDIGHPPAPRSVRALIMAPTRELVSQISEALEVFTKGTAVKVVTVTGGASLFRQSERLA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVL+ TPGR++D +R L + + LV+DEAD+MLDMGFI ++ I +P RQT Sbjct: 124 RGADVLVATPGRLIDLLDRNALTLEHCGYLVLDEADQMLDMGFIHALKKIAKHLPLKRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ +++ +L++P +++V P E I Y K LL++ L+ Sbjct: 184 LLFSATMPKLIEDLAQTYLRDPVKVQVAPPGKPIEAIVQGV--HYTPQGDKARLLEEYLK 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++F K L L GF +IHGN Q R + LS F+EG + ++V Sbjct: 242 THPG-EMALVFGRTKHGSEKLMKLLVAWGFKAGSIHGNKSQNQRERTLSEFREGALDVLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI V HV+N+D+PN ENY+HRIGRT RAG GKA A +++ I AI Sbjct: 301 ATDVAARGIDISGVRHVYNYDMPNVPENYVHRIGRTARAGADGKAVAFCAPAEMEEIQAI 360 Query: 361 EKLIEKKVDWLNG-----DLSSLNPPLE 383 EKL++ ++ L G DL+ + P + Sbjct: 361 EKLLKTRIPVLGGAPWAADLAGASKPAQ 388 >gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168] gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168] Length = 451 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 240/372 (64%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P+++ A+ + GY +PTP+Q + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPEILRAIAEQGYREPTPVQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I ++ A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D++++++E L NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKRLAEKLLHNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|319426187|gb|ADV54261.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 467 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 158/363 (43%), Positives = 228/363 (62%), Gaps = 4/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V A+ + GY PTPIQ K IP++L +V G AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + R + R +IL PTRELA QV +N +Y K LT + GG+ Q KKL Sbjct: 61 QMFADAPKIRPKRVRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKKKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + + +LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKLPTQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ +++ ++NP IE++ ++TA I+ T KK ALL L+ Sbjct: 181 NLLFSATLSKQVRVLAKTAVENPVEIEISRNTATAPQIDQWL--TTVDKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q +IF K+ L LEK+ S A H Q R ++L++FK G + + Sbjct: 239 KEQ-AWDQALIFIQTKQGAAKLVSQLEKRDISAEAFHSGRSQAVREQLLADFKSGKLAFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI + V N+D+P+ A++YIHRIGRTGRAG HG+A + V+K+D K++ A Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGEHGEAISFVSKDDFKNLCA 357 Query: 360 IEK 362 IE+ Sbjct: 358 IER 360 >gi|33594279|ref|NP_881923.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS] Length = 477 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 170/424 (40%), Positives = 254/424 (59%), Gaps = 18/424 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FAD GL P ++ + D GY PTPIQ + IP+V++ DV G AQTGTGKTA+F LP+L Sbjct: 19 FADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 78 Query: 61 --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + R P R LIL PTRELA QV ++ ++Y + L A++ GG+ Q + Sbjct: 79 LMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKE 138 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG +VL+ TPGR+LDH + + ++ + ILV+DEADRMLDMGF+P ++ I L+P Sbjct: 139 ALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT ++E++K+ ++L +P IEV ++TA+T+ +A K A + Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQ--IAYQMHGDTKRAAVVH 256 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S+ +K I+F N K L LE+ G +IHG+ Q RMK L FK G ++ Sbjct: 257 LVKSRG-LKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLE 315 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ V V N+D+P AE+Y+HRIGRTGRAG G+A L ++ +++ Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERYL 375 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 IEKLI+++V +L + D+ +H R + + G DR + + Sbjct: 376 LDIEKLIKRQVPRGKLELPA--------DLVARSHGRDRD--APRERGADRHRGERCTSG 425 Query: 418 SHIP 421 + P Sbjct: 426 AAAP 429 >gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429] gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429] Length = 521 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 162/395 (41%), Positives = 246/395 (62%), Gaps = 14/395 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + GLSP+++ AV GY + TPIQ KTIPL++Q DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ +++ L++ PTRELA Q + K G + ++ ++ GG Q L+ Sbjct: 61 EEVDPKNPQIQ---ALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR++DH NR + ++ LVIDEAD ML+MGF+ I+ I P RQT Sbjct: 118 EHPQILVGTPGRLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D+++K+ F+++P+ + + + T + ++ V T +Y K A+ + Sbjct: 178 LLFSATMPDDIKKIGVKFMKDPEEVHIASKGLTIDLVDQYLVNT-REYEKFDAMTRLFDV 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F K+ V L +L+ +G+ IHG++DQ +RM+ L +FK+G +Q +V Sbjct: 237 EQPEL--AIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+DVP E+Y+HRIGRTGRAG HG + T V + +I ++ AI Sbjct: 295 ATDVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHAR 394 EKLI K+ +++L PP E+ IA+ +A+ Sbjct: 355 EKLINKR-------MAALKPPSAEEAHIARLKNAK 382 >gi|86748916|ref|YP_485412.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2] gi|86571944|gb|ABD06501.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2] Length = 491 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 163/365 (44%), Positives = 229/365 (62%), Gaps = 6/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F D GL+ + A+ + Y PTPIQ +TIPL L DV GIAQTGTGKTASF LP+L Sbjct: 10 FQDFGLADPISRALQEENYTVPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHR 69 Query: 62 ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ILE + + + + R L+L PTREL+ Q+ D+F YG++ L+ L IGG+P Q + L Sbjct: 70 ILENRIKPQPKTCRVLVLSPTRELSGQILDSFNAYGRHIRLSATLAIGGVPMGRQVRSLM 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G +VL+ TPGR+LD L + +E LV+DEADRMLDMGFI I+ I + +P RQT Sbjct: 130 QGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ ++E L++P R+ V +ST E I + + +S K A+L +LQ Sbjct: 190 LFFSATMPKDIADLAEQMLRDPARVAVTPVASTVERINQRVI--HLDHSAKPAMLATILQ 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD + ++F K + L++ G + AIHGN Q R ++L+ F+ G ++ +V Sbjct: 248 -QDGVNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTGELRTLV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDA 359 A+D+AARG+D+ V HV NFD+PN E Y+HRIGRT RAG G A +L A E+ ++ Sbjct: 307 ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEETGYLRD 366 Query: 360 IEKLI 364 IEKLI Sbjct: 367 IEKLI 371 >gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA] gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA] Length = 447 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 170/420 (40%), Positives = 248/420 (59%), Gaps = 25/420 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF G P V + AGY PTPIQ + IP V+ DV G+AQTGTGKTA+F LP+L Sbjct: 1 MDFKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L++G R RVR L++ PTRELA Q+ D+F G+ L + GG+ Q +KL Sbjct: 61 HRLQQGERGRVR---ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA+V++ PGR+LDH +G + ++ +E+LV+DEAD+M DMGF+P I+ + +P RQ Sbjct: 118 KAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM +++ ++++ L +P ++V T + A T+ H + K LL +LL Sbjct: 178 TLLFSATMPIDIRTLAQDILVDPVTVQVGT-VAPAVTVAHALYPV--EQHLKTPLLLELL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + DT ++ +IF K L LEK G+ ++ GN+ Q R L F++GT Q++ Sbjct: 235 RHTDT-ESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV N+D+P+ AE YIHRIGRTGRA R G AFTLV +D + A Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRA 353 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 IE+ SL P+E+ + ++ + P P+K F R + + H Sbjct: 354 IER--------------SLGAPIERRTVQGFDY---SVPAPKKDVEFARPPREPRQARPH 396 >gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 382 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 161/371 (43%), Positives = 238/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + ++ A+ GY PTPIQ + IP VL+ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MKFEELNIITPIMKALKAEGYEAPTPIQERAIPAVLKGRDLLGCAQTGTGKTAAFSIPLL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 IL + R R PRT LIL PTRELA Q +N YGK + ++ GG+ +AQ + Sbjct: 61 QILSRERINERAPRTIRALILAPTRELALQTGENLRAYGKYLGIKHTVIFGGVSQDAQTR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 ++ G D+L+ TPGR+LD +G + +++I++LV+DEADRMLDMGF ++ I + +P Sbjct: 121 AMKAGVDILVATPGRLLDLMGQGYVRLDHIKLLVLDEADRMLDMGFAHDMKRILAKLPAA 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSATM E++ ++ L NP +IEV SSTA+TI+ + + S K ALL + Sbjct: 181 KQTLLFSATMPPEMKAMAGAILSNPVKIEVAPVSSTADTIDQSVY--FVEKSGKKALLIE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL++Q ++ + ++F K N+ +LEK AIHGN Q +R L+NFK + Sbjct: 239 LLRNQ-SVDSALVFTRTKHGADNVVRALEKARIKAQAIHGNKSQAARQTALNNFKAKRTR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HV NFD+PN E Y+HRIGRTGRAG G A + E+ ++ Sbjct: 298 VLVATDIAARGIDVQELSHVINFDLPNIPETYVHRIGRTGRAGMGGTALSFCDDEEKTYL 357 Query: 358 DAIEKLIEKKV 368 I+KLI +++ Sbjct: 358 RDIQKLIAREI 368 >gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus Py2] Length = 559 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 154/365 (42%), Positives = 235/365 (64%), Gaps = 5/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL+ +V A+ +A +V PTPIQ + IP +L D+ GIAQTGTGKTA+F LP+L Sbjct: 39 FSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPILDR 98 Query: 63 LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R + R L+L PTREL+ Q+ +NFEK+G++ N++V+L IGG+P Q + L Sbjct: 99 LVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQIRALS 158 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVL+ TPGR++D + ++ +E+LV+DEAD+MLDMGF+ I+ I +P R + Sbjct: 159 RGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHS 218 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM + +++ + L++P R+ V + TA+ +E + + K LL ++L Sbjct: 219 LFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVI--LVDKANKGQLLAEVLS 276 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D + ++F K + L K G + AIHGN Q R ++L+ F+EG I+ ++ Sbjct: 277 TED-IDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTLI 335 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV NFD+PN E+Y+HRIGRT RAGR G A + E+ + +I Sbjct: 336 ATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLRSI 395 Query: 361 EKLIE 365 EKLI+ Sbjct: 396 EKLIK 400 >gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3] gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3] Length = 509 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 239/372 (64%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ AV + GYV+PTPIQ + IP VLQ D+ AQTGTGKTA F LP+L Sbjct: 59 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 118 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQV +N Y K N+ ++ GG+ Q Sbjct: 119 QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMM 178 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 179 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 238 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++E L NP +EV ++ +E I +H + ++K LL Sbjct: 239 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 295 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL+ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 296 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 354 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 355 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 414 Query: 357 IDAIEKLIEKKV 368 + IE+L++K++ Sbjct: 415 LRDIERLLKKEI 426 >gi|224825987|ref|ZP_03699090.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] gi|224601624|gb|EEG07804.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] Length = 562 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 163/369 (44%), Positives = 230/369 (62%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DLGLS ++ AV + GY PTPIQ + IP V++ D+ AQTGTGKTA F LP+L Sbjct: 4 IKFTDLGLSEPLLRAVAETGYTTPTPIQAQAIPQVIKGGDLLAAAQTGTGKTAGFTLPLL 63 Query: 61 TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L ++ PR L+L PTRELAAQV ++ YGK ++ GG+ Q L Sbjct: 64 HRLGPAPTHLKGRPRALVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQIAAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ + +L+P RQ Sbjct: 124 RKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLALLPAKRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ +++ L NP+ +EV ++ E +E KK LL L+ Sbjct: 184 NLLFSATFSDEIKVLADRLLNNPQLVEVARRNTANELVEQKV--HLVDRDKKTELLTHLI 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 SQ ++F K L L+K G + AIHGN Q +R K L++FK T+Q++ Sbjct: 242 -SQGDWHQVLVFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNARTKALADFKANTLQVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAG G+A +LV ++ K + Sbjct: 301 VATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLVCVDEFKFLKD 360 Query: 360 IEKLIEKKV 368 IEKLI+K + Sbjct: 361 IEKLIKKDI 369 >gi|260223291|emb|CBA33706.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative symbiont of Hydra magnipapillata] Length = 608 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 159/374 (42%), Positives = 240/374 (64%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +L L+P +V AV + GY PT IQ + IPLVL+ HD+ G AQTGTGKTA+F LP+L Sbjct: 21 MNFEELKLAPAIVKAVREQGYETPTAIQAQAIPLVLEGHDLLGGAQTGTGKTAAFTLPLL 80 Query: 61 TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L R+ R L+L PTRELAAQV ++ +YGK L+ ++ GG+ Q Sbjct: 81 HRLSMSRSAQNKFGGTGIRALVLTPTRELAAQVEESVRQYGKYLQLSSTVVFGGVGMNPQ 140 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K+++G D+L+ TPGR+LD +G L + +++LV+DEADRMLDMGFI ++ + +LVP Sbjct: 141 ISKVKKGVDILVATPGRLLDLAQQGMLDLGQVQMLVLDEADRMLDMGFIHDVKKVLALVP 200 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE+++++ L+NP+ ++V ++T + I V KK ALL Sbjct: 201 KEKQSLLFSATFSDEIRELANGLLKNPQSVQVTPRNTTVQRITQ--VIHPVGRGKKKALL 258 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ Q+ ++F K N+ LEK G + A+HGN Q +R + LS FK G Sbjct: 259 AHIINEQN-WSQVLVFTRTKFGANNVAEFLEKNGITAMALHGNKSQAARTQALSGFKSGD 317 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VA+D+AARG+DI D+ HV N+++PN +E+Y+HRIGRTGRAG G A LV ++ Sbjct: 318 VRALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGADGAAVNLVCLDEEG 377 Query: 356 HIDAIEKLIEKKVD 369 + IE+ ++K++ Sbjct: 378 FMQDIERFTKQKIE 391 >gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1] gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1] Length = 457 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 161/370 (43%), Positives = 239/370 (64%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+ ++ A+ D GY PTPIQ + IP+V++ DV AQTGTGKTA F LP+L Sbjct: 1 MSFTNLGLNESLLKAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + ++ + R L+L PTRELAAQVA++ + YGK T ++ GG+ Q Sbjct: 61 ERLSETHPKMGKKQIRVLVLTPTRELAAQVAESIKTYGKYMKYTSTVVYGGVGINPQLAT 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + RG D++I TPGR+LD + + + +E LV+DEADRMLDMGFI I+ + ++P R Sbjct: 121 IRRGVDIVIATPGRLLDIAGQQGIDFSALETLVLDEADRMLDMGFIHDIKKLMKMMPKER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT + E++K++ L+NP +EV ++TA+ I V + S+K LL QL Sbjct: 181 QTLLFSATFSLEIKKLASGLLKNPVLVEVARENTTADQISQ--VVHFVDKSRKRELLSQL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++++D + ++F K L LE+ G S AIHGN Q +R K L++FK I++ Sbjct: 239 IKTKD-WRQVLVFTRTKHGANRLTKQLEEAGISAAAIHGNKSQGARTKALASFKANEIRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV N+++PN E+Y+HRIGRTGRAG+ G+A +LV ++ K + Sbjct: 298 LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGQSGEAVSLVCVDEHKLLF 357 Query: 359 AIEKLIEKKV 368 IEK I+ ++ Sbjct: 358 DIEKFIKSEI 367 >gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii L2-6] Length = 648 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 156/375 (41%), Positives = 234/375 (62%), Gaps = 4/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS ++ AV +AGY P+PIQ IP VL+ D+ G AQTGTGKTA+F LPML Sbjct: 1 MTFNDLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPML 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L R + R LIL PTRELA Q+ ++F+ YGK L ++ GG+ Q + + Sbjct: 61 DRLSAAAPRRKGAVRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAI 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+LI PGR+ D +G + ++N+E+ V+DEADRMLDMGF+ ++ + + +P RQ Sbjct: 121 RKGVDILIACPGRLNDLIGQGHIDLSNLEVFVLDEADRMLDMGFVHDVKKVIAKLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM E+++++ L +P ++V+ SST E I+ + + K LL L+ Sbjct: 181 NLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVERIDQSLY--FVEKGNKKLLLPWLI 238 Query: 240 QS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++N ++F K + L KQG + AIHGN Q +R+ L FKEG ++ Sbjct: 239 KNLTPPVQNALVFSRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAALEGFKEGKTRV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ HVFN+D+P E Y+HRIGRT RAG G A + A E+++++ Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEMEYLA 358 Query: 359 AIEKLIEKKVDWLNG 373 IEKL +K+ ++G Sbjct: 359 GIEKLNRRKIPVVSG 373 >gi|293397166|ref|ZP_06641440.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582] gi|291420637|gb|EFE93892.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582] Length = 447 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 164/371 (44%), Positives = 239/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +++ AV + GY +PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVL 60 Query: 61 TILEKGRARV--RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L K V R P R LIL PTRELAAQ+ +N + Y K+ L ++ GG+ Q Sbjct: 61 QLLSKHDHAVKGRRPVRALILTPTRELAAQIGENVQAYSKHLRLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + S +P Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLSKLPPK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++ L NP +EV ++ +E IE + +K LL Q Sbjct: 181 RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIEQSV--HFVDKKRKRELLSQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ D + ++F K +L L K G + AIHGN Q +R + L++FK+G I+ Sbjct: 239 MIGEGD-WRQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357 Query: 358 DAIEKLIEKKV 368 IE+L+++++ Sbjct: 358 RDIERLLKREI 368 >gi|84499824|ref|ZP_00998112.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597] gi|84392968|gb|EAQ05179.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597] Length = 451 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 157/381 (41%), Positives = 236/381 (61%), Gaps = 9/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF LGL P + + + G +PTPIQ K IP ++ D+ G+AQTGTGKTA+F LP+L Sbjct: 1 MDFNSLGLLPCITENLAELGLTRPTPIQTKAIPHAMEGRDILGLAQTGTGKTAAFGLPLL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 T + E+G+ + R L+L PTRELA Q+ +N + Y K ++ V L++GG AQ + Sbjct: 61 TAIAREQGKPEPKTVRGLVLAPTRELAKQIVENLQAYAKGTHMRVGLVVGGASINAQVNR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG DVL+ TPGR++D +R + ++ LV+DEAD+MLD+GFI ++ I +L+P TR Sbjct: 121 LARGTDVLVATPGRLIDLLDRRAVTLSQTRFLVLDEADQMLDLGFIHALRRIATLLPQTR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQ 236 QT+LFSATM + +++ ++L +P R+E P A+ IE F+A +K ALL Sbjct: 181 QTMLFSATMPKLMAEIAGSYLTDPVRVETAPPGKPADKIEQSVHFIA----QGEKTALLI 236 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L + I+F K L +L G++ A+HGN Q R + + F+EG Sbjct: 237 EHLDAHRA-DPAIVFARTKHGSERLMKNLLAAGYAAVAVHGNKSQGQRDRAIREFREGEA 295 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DIP + +V+N+D+PN A+NY+HRIGRT RAGR G A A ++ Sbjct: 296 MVLVATDVAARGIDIPGIRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCAPAEMGE 355 Query: 357 IDAIEKLIEKKVDWLNGDLSS 377 + I+KL+ K++ G + S Sbjct: 356 LRDIQKLLGKELPVSGGTVWS 376 >gi|186683738|ref|YP_001866934.1| DEAD/DEAH box helicase domain-containing protein [Nostoc punctiforme PCC 73102] gi|186466190|gb|ACC81991.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC 73102] Length = 443 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 169/374 (45%), Positives = 236/374 (63%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+ LGLS +++ AV + GY +PTPIQ + IP VL D+ AQTGTGKTASF LP+L Sbjct: 1 MNFSTLGLSNEIIRAVTERGYTEPTPIQRQAIPAVLSGSDLLAGAQTGTGKTASFTLPLL 60 Query: 61 TILEKGR-ARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L + +V R R LIL PTRELAAQV ++ +YGK L ++ GG+ Sbjct: 61 HRLSSEKNVKVTSNGYRPIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVGINL 120 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q ++L+ D+L+ TPGR+LDH +G L +++IE+LV+DEADRMLDMGFI I+ I +++ Sbjct: 121 QKQRLKNRVDILVATPGRLLDHVQQGTLNLSHIEVLVLDEADRMLDMGFIHDIRRILAIL 180 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLF AT +D+++ ++ L NPK IEV + TAETI KK L Sbjct: 181 PKQRQNLLFFATFSDKIKALAAGLLNNPKMIEVARRNVTAETIAQKIYQV--DRDKKRQL 238 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ +D ++F K L L + AIHGN Q R L+ FK G Sbjct: 239 LAHLIR-RDNWYQVLVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPVRTNALAKFKNG 297 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++Q++VA+D+AARGLDI ++ HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 298 SLQVLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLVCVDEY 357 Query: 355 KHIDAIEKLIEKKV 368 + IEKLIE+++ Sbjct: 358 SLLTDIEKLIEQRL 371 >gi|157369574|ref|YP_001477563.1| ATP-dependent RNA helicase RhlE [Serratia proteamaculans 568] gi|157321338|gb|ABV40435.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568] Length = 456 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 165/371 (44%), Positives = 238/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +++ AV + GY +PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARV--RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L K V R P R LIL PTRELAAQ+ +N E Y K L ++ GG+ Q Sbjct: 61 QLLSKHDHAVKGRRPVRALILTPTRELAAQIGENVESYSKYLRLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQRAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +D+++ ++ L NP +EV ++ +E IE + +K LL Q Sbjct: 181 RQNLLFSATFSDDIKGLANKLLHNPASVEVARRNTASEQIEQSV--HFVDKKRKRELLSQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ D K ++F K +L L K G + AIHGN Q +R + L++FK+G I+ Sbjct: 239 MIGEGD-WKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 357 Query: 358 DAIEKLIEKKV 368 IE+L+++++ Sbjct: 358 RDIERLLKREI 368 >gi|78223770|ref|YP_385517.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15] gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15] Length = 451 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 168/409 (41%), Positives = 249/409 (60%), Gaps = 25/409 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F + L P+V+ V AGY PTPIQ + IP V++ DV G+AQTGTGKTA+F LP+L Sbjct: 1 MEFKEFNLHPQVMAGVTAAGYTTPTPIQAQAIPTVMEGRDVMGLAQTGTGKTAAFALPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R RVR L++ PTRELA Q+ D+F G+ L + GG+ Q +KL Sbjct: 61 HRLAQGERGRVR---ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVNVNPQIQKL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA++++ PGR+LDH +G + ++++E+LV+DEAD+M DMGF+P ++ I +P RQ Sbjct: 118 KAGAEIVVACPGRLLDHMAQGTIDLSHLEVLVLDEADQMFDMGFLPDLRRILKQLPPKRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM +++ +++ L++P ++V T + A T+ H + K LL +LL Sbjct: 178 TLLFSATMPIDIRVLAQEILRDPVTVQVGT-VAPAVTVTHALYPV--EQHLKTPLLLELL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + DT ++ +IF K L +EK G+ ++ GN+ Q R L F++GT Q++ Sbjct: 235 RHTDT-ESVLIFTRTKHRAKRLGEQMEKAGYKAASLQGNLSQNRRQAALDGFRDGTFQIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV N+D+P+ AE YIHRIGRTGRA R G AFT+V ED + Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTMVTSEDTAMVRT 353 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408 IE+ LN LE+ +A ++ + P P+K T F R Sbjct: 354 IER--------------KLNTSLERRTMAGFDY---SVPAPKKDTEFAR 385 >gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b] gi|126454229|ref|YP_001065030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106a] gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106b] gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei S13] gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1710a] gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b] gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106a] gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei S13] gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106b] gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1710a] Length = 485 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|53718338|ref|YP_107324.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei K96243] gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344] gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4] gi|126450332|ref|YP_001081986.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC 10247] gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 305] gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei Pakistan 9] gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei K96243] gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344] gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247] gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 305] gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei Pakistan 9] gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4] Length = 485 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2] gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2] Length = 453 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 162/355 (45%), Positives = 228/355 (64%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK----GRARVRMP-R 74 GY TPIQ + IP+VL DV G AQTGTGKTA+F LP+L L + + R P R Sbjct: 2 GYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPARHPVR 61 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 L+L PTRELA QVA Y K+ L ++ GG+ + Q +L++G +VL+ TPGR+L Sbjct: 62 ALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRLL 121 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 DH +++N +E +V+DEADRMLD+GF+P +Q I S +P +R TLLFSAT + E++++ Sbjct: 122 DHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSATFSPEIKRL 181 Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254 + ++LQ+P IEV P+ TA T+E F K+ A ++ +L+ +D ++ IF N Sbjct: 182 AGSYLQDPVTIEVARPNETASTVEQRFYKV-TDDDKRYA-IRSVLKERD-IRQAFIFSNS 238 Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 K L +LE+ G A+HG+ Q R+K L FK G + L+V +D+AARGLDI DV Sbjct: 239 KLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARGLDIKDV 298 Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 VFN+DVP AE+Y+HRIGRTGRAG G A TLV D +++ IEKL +KK++ Sbjct: 299 PAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKKIE 353 >gi|241662052|ref|YP_002980412.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12D] gi|240864079|gb|ACS61740.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D] Length = 565 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 163/376 (43%), Positives = 240/376 (63%), Gaps = 11/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY +PTPIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L + +V+ P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 61 HRLSASQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L+RG D+++ TPGR+LDH + + +++IE+LV+DEADRMLDMGFI I+ I + Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +D+++++++ L P IEV ++TAET+E +K Sbjct: 181 ILPPKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPV--DRERKR 238 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L++ D ++F K L L + G AIHGN Q +R + L+ FK Sbjct: 239 ELLAKLVRDND-WHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFK 297 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT++++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV + Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357 Query: 353 DIKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 358 EHGLLRDIERLIKREL 373 >gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S] gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S] Length = 461 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 160/377 (42%), Positives = 230/377 (61%), Gaps = 13/377 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL+ ++ A+ Y PTPIQ + IP++L+ D+CGIAQTGTGKTA+F LP L Sbjct: 1 MQFTDLGLAEPILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSL 60 Query: 61 TILEKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 AR P R L+L PTRELAAQ+A +F YG+ L+V ++ GG+P Sbjct: 61 DHF----ARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINR 116 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L RG D+++ TPGR+LD ++ + + EI V+DEAD+M+DMGFI ++ I L+ Sbjct: 117 QIRALGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLL 176 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ L FSATM E++ ++ FL +P ++ V S+TAE + AT+ +K AL Sbjct: 177 PKERQNLFFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQ--ATFVNQMEKQAL 234 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++S+D + +IF K + LE G AIHGN Q R L F+ G Sbjct: 235 LNLTIRSED-IDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHG 293 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++L+VA+D+AARG+D+ V HV NF++PN E Y+HRIGRT RAG G A + VA ++ Sbjct: 294 HVKLLVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDER 353 Query: 355 KHIDAIEKLIEKKVDWL 371 ++ AIE+ + K+D + Sbjct: 354 PYLKAIERTTKVKLDVV 370 >gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346] gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346] Length = 488 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] Length = 436 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 164/392 (41%), Positives = 240/392 (61%), Gaps = 24/392 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P+++ + GY +PTPIQ + IP +L D+ AQTG+GKTA+F LP+L Sbjct: 13 FSSLSLRPELLQVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFSLPILHK 72 Query: 63 LEKGRAR-------------------VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103 L + R +R R L+L PTRELA QV +F KY K L Sbjct: 73 LTEPLLRLDEKNQQESEAPSCSQVPAIRAIRALVLTPTRELALQVHGSFVKYAKLTQLKS 132 Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163 AL+ GG+ +AQ + L G D+L+ TPGR+LDH RG + ++ +E LV DEADRMLDMGF Sbjct: 133 ALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSMSLSELEFLVFDEADRMLDMGF 192 Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223 I I +P TRQTLLFSAT + L +S++ L++PKRIEV ++ A IE A Sbjct: 193 KDEIDAIVKQLPKTRQTLLFSATFDESLYGLSQSLLRDPKRIEVGERNAAAVEIEQRVYA 252 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 +K AL+ L++S ++ +IF +K L +L K G A HG++ Q + Sbjct: 253 V--DSDRKLALITHLIES-GKLQQVLIFSRKKVAADKLAANLTKAGIGAQAFHGDLSQGA 309 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R K+L +FK+G ++++VA+D+AARG+DI D+ +V N+++P +AE+Y+HRIGRTGRAG G Sbjct: 310 REKVLQSFKDGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHRIGRTGRAGNKG 369 Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKV--DWLNG 373 A TL+ +ED ++ +E +++K++ WL G Sbjct: 370 VAITLLCREDEHLLEEVEVVLDKRLPQQWLAG 401 >gi|253699589|ref|YP_003020778.1| DEAD/DEAH box helicase [Geobacter sp. M21] gi|251774439|gb|ACT17020.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21] Length = 453 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 156/370 (42%), Positives = 232/370 (62%), Gaps = 8/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF L PKV + GYV PTPIQ++ IP V+ DV G+AQTGTGKTA+F LPML Sbjct: 1 MDFKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVVSGQDVLGLAQTGTGKTAAFGLPML 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++++ R VR L+L PTRELA Q+ + GK L + GG+ Q KKL Sbjct: 61 HRLVQEERGHVR---GLVLAPTRELAEQINEALNGMGKQTRLRSITVYGGVNINTQIKKL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA++++ PGR+LDH ++G + ++ +EILV+DEAD+M DMGF+P ++ I +P RQ Sbjct: 118 KEGAEIVVACPGRLLDHISQGTIDLSKVEILVLDEADQMFDMGFLPDVRKILRALPGKRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM D++++++ L+NP ++V+ ++ A T+ H K LL ++L Sbjct: 178 NLMFSATMPDDIRRLAHEILRNPVTVQVSR-TAPAATVSHALYPVGQHL--KTPLLFEML 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + DT ++ +IF K + LEK G+ ++ GN+ Q R L F++GT Q+M Sbjct: 235 KHTDT-ESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIM 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+P+ E Y HRIGRTGRA + G AFT+V ED + A Sbjct: 294 VATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRA 353 Query: 360 IEKLIEKKVD 369 IEK++ K++ Sbjct: 354 IEKVLGTKIE 363 >gi|37676599|ref|NP_936995.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|37201142|dbj|BAC96965.1| DNA and RNA helicase [Vibrio vulnificus YJ016] Length = 445 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 161/382 (42%), Positives = 238/382 (62%), Gaps = 7/382 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA G +P+VV A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LP++ Sbjct: 19 MSFASQGFAPEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLI 78 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LE G++ R R LI PTRELA Q+ADN + Y K NL+VA + GG +Q + Sbjct: 79 QQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERM 138 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H G + + NIE LV DEADR+LDMGFI ++ I V Sbjct: 139 LENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNP 198 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++S++ L+ PKRI V ++TA T+ H +K LL +L Sbjct: 199 QIMMFSATTSSQLNELSKDILRKPKRIAVERENTTAHTVAHVLYPV--DQERKTELLSEL 256 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ ++ L+ G HG+ Q +R + L FKEG +++ Sbjct: 257 I-GRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRV 315 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 316 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 375 Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380 +E LI++++ + +L+ P Sbjct: 376 QVENLIQQRIRRI--ELAGYEP 395 >gi|257092638|ref|YP_003166279.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045162|gb|ACV34350.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 481 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 234/376 (62%), Gaps = 13/376 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA LGLS ++ AV D GY +PTP+Q + IP++L DV AQTGTGKTA F LP+L Sbjct: 4 SFALLGLSAELTRAVDDQGYSEPTPVQAQAIPVILAGRDVLAGAQTGTGKTAGFTLPLLQ 63 Query: 62 ILEKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L A +P R LIL PTRELAAQ+ ++ YGK L L+ GG+ Q Sbjct: 64 RLATRAAPAGVPGQRSPVRALILTPTRELAAQIEESVRTYGKYLPLKSTLIYGGVNINPQ 123 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L RG D+L+ TPGR+LDH + + + +EILV+DEADRMLDMGFI I+ I +L+P Sbjct: 124 IDALRRGVDILVATPGRLLDHLQQKTVSLAQVEILVLDEADRMLDMGFIRDIRRILALLP 183 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCA 233 RQ LLFSAT ++E++K+++ L P +EV ++ +E + V ++ +K Sbjct: 184 AKRQNLLFSATFSNEIRKLADGLLHAPAMVEVARRNAESELVAQRVHPVDSW----RKRE 239 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ S D + ++F K L L K G AIHGN Q +R + L+ FK Sbjct: 240 LLTHLVASGD-WRQVLVFTRMKSGANRLAEQLCKVGIEATAIHGNKSQPARTRALAGFKA 298 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GT++++VA+D+AARGLDI ++ HV NF++P+ E+Y+HRIGRTGRAG G+A +LV+ E+ Sbjct: 299 GTVRVLVATDIAARGLDIEELPHVVNFELPHVPEDYVHRIGRTGRAGSTGEAISLVSPEE 358 Query: 354 IKHIDAIEKLIEKKVD 369 + IEKL+ +++D Sbjct: 359 RPLLADIEKLLTRRID 374 >gi|310814605|ref|YP_003962569.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare Y25] gi|308753340|gb|ADO41269.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare Y25] Length = 426 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 162/378 (42%), Positives = 246/378 (65%), Gaps = 11/378 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF LGLSP++ A+ + G +PTPIQ + IP + DV G+AQTGTGKTA+F LPM+ Sbjct: 1 MDFDMLGLSPRLTKALAELGITEPTPIQAQAIPHAMNGRDVLGLAQTGTGKTAAFGLPMI 60 Query: 61 TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K RA+ + R L+L PTRELA Q+A+N Y K+ +L ++ GG Q ++ Sbjct: 61 DALIKDSRRAQAKGARALVLAPTRELAKQIAENLAAYTKDSHLKTVVVTGGAGIGGQIQR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 +ERG +L+ TPGR++D +R + ++ E LV+DEAD+MLD+GFI ++ I L+P R Sbjct: 121 MERGTAILVATPGRLIDLLDRKAIDLSQTEFLVLDEADQMLDLGFIHALRRIAPLLPANR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQ 236 QT+LFSATM ++++++ +FL NP R++VN P A I FVA+ A K LL Sbjct: 181 QTMLFSATMPKQMEELAASFLSNPIRVQVNPPGQAATKITQSVHFVASRA----KTDLLI 236 Query: 237 QLLQS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +LL + +D + ++F K + L LE G++V AIHGN Q R + L +F+ GT Sbjct: 237 ELLDAHRDEL--ALVFGRTKHGMEKLAKQLENAGYAVAAIHGNKSQGQRDRALRDFRAGT 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGLDIPDV +V+N+++PN +NY+HRIGRT RAG+ G+A A +++ Sbjct: 295 LRVLVATDVAARGLDIPDVRYVYNYELPNVPDNYVHRIGRTARAGKDGQAVAFCAPDEMG 354 Query: 356 HIDAIEKLIEKKVDWLNG 373 + I+K+++ + +G Sbjct: 355 DLRDIQKVMKTTIPVASG 372 >gi|298490698|ref|YP_003720875.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae' 0708] gi|298232616|gb|ADI63752.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708] Length = 492 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 167/374 (44%), Positives = 233/374 (62%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L LSP+++ AV + GY KPTPIQ++ IP VL D+ AQTGTGKTASF LP+L Sbjct: 1 MSFSNLALSPEIIRAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLL 60 Query: 61 TILE-----KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L K + +P R LIL PTRELAAQV ++ YGK L + GG+ Sbjct: 61 HQLSSNKNVKSNSTGWVPIRALILTPTRELAAQVEESVHDYGKYLKLKSMAMFGGVSINP 120 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L+ G D+++ TPGR+LDH +G + ++ IE+LV+DEADRMLDMGFI I+ I S++ Sbjct: 121 QKRLLKSGVDIVVSTPGRLLDHVEQGTVNLSRIEVLVLDEADRMLDMGFIRDIRRIMSIL 180 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLF AT +D++++++ L P IEV + TA+TI A KK L Sbjct: 181 PKKRQNLLFFATFSDKIKELAAGLLNRPTMIEVARRNVTADTIAQR--AYQVDRDKKPQL 238 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ QD ++F K L L AIHGN Q +R L+ FK G Sbjct: 239 LAHLIK-QDDWYQVLVFTRTKYGADRLVKQLNDDRIQALAIHGNKSQGARTHALAKFKNG 297 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++Q++VA+D+AARGLDI ++ HV N+D+P E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 298 SLQVLVATDIAARGLDISELPHVVNYDLPYVPEDYVHRIGRTGRAGARGEAISLVCVDEY 357 Query: 355 KHIDAIEKLIEKKV 368 + IEKLI++K+ Sbjct: 358 HLLADIEKLIQQKL 371 >gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU Goat Q177'] gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 331] gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 334] gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU Goat Q177'] gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 331] gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 334] Length = 411 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 172/407 (42%), Positives = 251/407 (61%), Gaps = 13/407 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +++ A+ + GYV+PTP+Q + IP++LQ DV AQTGTGKTA F LP+L Sbjct: 1 MSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA---RVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L R R P R LIL PTRELA QV + YGK L ++ GG+ + Q Sbjct: 61 QRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L RG D+L+ TPGR+LD N+G L ++ +E V+DEADRMLDMGF+P I+ I L+P Sbjct: 121 INHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +RQ LLFSAT + E++++++ L +P IEV ++ A I H V +K LL Sbjct: 181 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITH--VVHPVDRQRKRELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ S++ + ++F K L LE G S AIHGN Q +RM+ L+ FK+G Sbjct: 239 SFMIGSKN-WRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGK 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+AARGLDI + HV NF++P+ A++Y+HR+GRTGRA G A +LV+ ++++ Sbjct: 298 IRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVR 357 Query: 356 HIDAIEKLIEKKV--DWLNGDLSS---LNPPLEKIDIAQHNHARKNN 397 + IEKL++ K+ + + G S P++ + A+ N KNN Sbjct: 358 LLRDIEKLLQSKMPQEVIPGYEPSPFTKAAPVQAVRRARSNQRGKNN 404 >gi|317401375|gb|EFV82010.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54] Length = 591 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 159/377 (42%), Positives = 233/377 (61%), Gaps = 18/377 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+P ++ A+ DAG+ PT +Q IP L HD+ +QTG+GKTA+F+LP L Sbjct: 1 MSFENLGLAPALLSALQDAGFTTPTTVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60 Query: 61 TILEKGRARVRMP-------RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112 + +MP + L+L PTRELA QV D YG+ +L A ++GG+P+ Sbjct: 61 HRI------AQMPANKGVGVQVLVLAPTRELALQVTDATATYGRKLADLRTATVVGGMPY 114 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 AQ K L R DVL+ TPGR++DH N G++ +N + LV+DEADRMLDMGFI I+ I S Sbjct: 115 GAQLKALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIS 174 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKK 231 +P RQTLLFSAT+ + K++ +++P+RIEV I + YA S K Sbjct: 175 RLPVERQTLLFSATLDGTVAKLAARMMRDPQRIEVAGAKEKHTNITQSLL--YADDASHK 232 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL +L+ ++ I+F + K+ +L L QGF+ A+HG+++QR R + LS Sbjct: 233 MQLLDHVLRDA-SLDQAIVFTSTKRGADDLADHLADQGFAAAALHGDMNQRQRTRTLSQL 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G ++++VA+D+AARG+D+ + H NFD+P +AE+Y+HRIGRTGRAGR+G AFTL Sbjct: 292 QRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLATH 351 Query: 352 EDIKHIDAIEKLIEKKV 368 + + IE I + + Sbjct: 352 SERHKVRRIEHYIGQSI 368 >gi|126440586|ref|YP_001057787.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 668] gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 668] Length = 485 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp. K31] gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31] Length = 479 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 230/368 (62%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL+ ++ A+ D GY PTPIQ + IPLV+ D+ GIAQTGTGKTA+F LP+L Sbjct: 4 FTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHR 63 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +K A R R L+L PTRELA Q+A++F YGK+ LTVA + GG+ + Q K L Sbjct: 64 LAEDKKPAPRRGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKALA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++DH +N +EI V+DEAD+MLD+GF+ I+ I S +P RQ Sbjct: 124 AGVDVVVATPGRLMDHLGEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQN 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ K++ L+NP ++ + ++T E I+ + AQ +K LL +LL Sbjct: 184 LFFSATMPSEIGKLAGELLKNPAQVAITPSATTVERIDQSLIFIEAQ--RKRPLLAELLA 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +++ I+F K+ + L G AIHG+ Q R + L+ FK G ++ ++ Sbjct: 242 DK-SVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKALI 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HVFN+++PN E+Y+HRIGRT R G+ G A + A ++ + I Sbjct: 301 ATDIAARGIDVNDVSHVFNYELPNVPESYVHRIGRTARKGKEGIAISFCADDERNLLKDI 360 Query: 361 EKLIEKKV 368 +K + + Sbjct: 361 QKATRQTI 368 >gi|309779776|ref|ZP_07674531.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA] gi|308921353|gb|EFP66995.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA] Length = 404 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 163/376 (43%), Positives = 240/376 (63%), Gaps = 11/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY +PTPIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 12 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL 71 Query: 61 TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L + +V+ P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 72 HRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 131 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L+RG D+++ TPGR+LDH + + +++IE+LV+DEADRMLDMGFI I+ I + Sbjct: 132 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 191 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +D+++++++ L P IEV ++TAET+E +K Sbjct: 192 ILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPV--DRERKR 249 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L++ D ++F K L L + G AIHGN Q +R + L+ FK Sbjct: 250 ELLAKLVRDND-WHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFK 308 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT++++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV + Sbjct: 309 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 368 Query: 353 DIKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 369 EHGLLRDIERLIKREL 384 >gi|291616785|ref|YP_003519527.1| RhlE [Pantoea ananatis LMG 20103] gi|291151815|gb|ADD76399.1| RhlE [Pantoea ananatis LMG 20103] Length = 449 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 162/374 (43%), Positives = 237/374 (63%), Gaps = 6/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL 60 Query: 61 TILEK--GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L G R R P R LIL PTRELAAQV +N +Y K L ++ GG+ Q Sbjct: 61 QKLSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++ +E+LV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++E L NP+++EV ++ +E + + +K LL Q Sbjct: 181 RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVSQQV--HFVDKKRKRELLSQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + + ++F K +L L K G + AIHGN Q +R + L++FK G I+ Sbjct: 239 LI-GEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA G A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357 Query: 358 DAIEKLIEKKVDWL 371 IE+L+++++ L Sbjct: 358 RDIERLLKREIPRL 371 >gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565] gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii B565] Length = 416 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 168/402 (41%), Positives = 243/402 (60%), Gaps = 11/402 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+L LSP++ + + GY PTPIQ + IP++L D+ AQTGTGKTA+FVLP+L Sbjct: 6 FAELALSPRLQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQ 65 Query: 62 ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L + + + P R L+L PTRELA QVA++ +YG+ LT + GG+ AQ L+ Sbjct: 66 LLAQPQMESQRPIRALVLVPTRELAVQVAESVARYGQGTGLTSTQVYGGVSIAAQVDALK 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+LDH +G L ++++ LV DEADRMLDMGF+ I + +P RQT Sbjct: 126 NGVDLLIATPGRLLDHLRQGALSLDSLRHLVFDEADRMLDMGFMDEITALLKQLPVDRQT 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT D L +S+ L++P+ IEV ++TA +E +K AL++ +L+ Sbjct: 186 LLFSATCDDNLFALSKVLLRDPELIEVAPRNTTAAEVEQRVYTV--DSDRKLALVEHMLK 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF ++ L L K G + A HG++ Q +R K+L F+ GT+Q +V Sbjct: 244 VKG-WAPALIFSRTRQGADKLAQQLGKSGINALAFHGDLSQSAREKVLLEFRAGTLQALV 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI D+ +V N + P AE+Y+HRIGRTGRAG G A TL + ED ++ + Sbjct: 303 ATDVAARGLDITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDTPLLEKV 362 Query: 361 EKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKN 396 E +++ ++ W G DL+ P P AQ ARK Sbjct: 363 EAVLDTRLPQQWFPGFEPDLTRFEPEPRRNSKAAQKQRARKQ 404 >gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1] gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 463 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 163/385 (42%), Positives = 238/385 (61%), Gaps = 10/385 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PTPIQ + IPL L HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLALAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L +V R PR L+L PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QYLGTEPQKVGPGPRKPRALVLTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L RG D++I PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 DSLRRGVDMVIACPGRLIDHIERRSIDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPK 180 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT + +++++ F++NP+ ++V ++ AETI H ++K LL Sbjct: 181 QNRQTLLFSATFPESIKQLAMEFMRNPREVQVTPQNTVAETIAHRVHPV--DTARKRELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL QD ++F K L LEK G AIHGN Q R++ L +FK G Sbjct: 239 LHLL-GQDARVQTLVFAKTKHGSDKLATHLEKAGIQAAAIHGNKSQGQRLRALGDFKSGK 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G +G+A +LV++ED K Sbjct: 298 VKVLVATDIAARGIDIDQLPRVINYDLPMVAEDYVHRIGRTGRNGANGEALSLVSQEDAK 357 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNP 380 ++ I +++ + ++ DL P Sbjct: 358 YLRQIVRMLGRDMEIR--DLPGFEP 380 >gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581] Length = 446 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 159/366 (43%), Positives = 233/366 (63%), Gaps = 4/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ AV D GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG+ A+ R L+L PTRELAAQVA++ + YGK NL A++ GG+ Q +L Sbjct: 61 HGLSKGQSAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+LI TPGR+LD + + + +E+L++DEADRMLDMGFI I+ I +P RQ Sbjct: 121 RKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +++++ +++ + NP I V +STA ++ ++K LL +L+ Sbjct: 181 NLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPV--DKNQKRHLLVELI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + ++F K+ L LEK+ AIHGN Q +R + LS FK G ++++ Sbjct: 239 -NQHNWEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N D+P A++Y+HRIGRTGRAG G+A +LV+ ++ + + Sbjct: 298 VATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQD 357 Query: 360 IEKLIE 365 IE+LI+ Sbjct: 358 IERLIQ 363 >gi|189425609|ref|YP_001952786.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ] gi|189421868|gb|ACD96266.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ] Length = 430 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 152/368 (41%), Positives = 226/368 (61%), Gaps = 2/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+L L + A+ GY PTPIQ + IP L D+ AQTGTGKTA+F++P L Sbjct: 1 MSFAELNLHASIQKAISVCGYATPTPIQAEAIPQALSGRDLIASAQTGTGKTAAFIIPAL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K PR L+L PTRELAAQVAD+ +YG+ + ++GG+P+ Q + L Sbjct: 61 ERLAKPGPAGIGPRVLVLTPTRELAAQVADSVARYGRFLRMRYGSIVGGMPYPDQVRLLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+++ TPGR++DH RG++ ++ +E+LV+DEADRMLDMGF + I + P RQT Sbjct: 121 QPVDLIVATPGRLIDHLERGRIDLSRVELLVLDEADRMLDMGFTDAVDQIAAATPKKRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLF+ATM D + +++ L++P RI +++P ++IE T K +L LL+ Sbjct: 181 LLFTATMDDPMARLAGRLLKDPSRIAISSPKENHDSIEQRMHLT-DNLGHKHKMLHHLLE 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 T+ IIF K++ L L +G S A+HG++ Q +R + L+N + G ++ +V Sbjct: 240 DP-TITQAIIFSATKRDADTLARDLYDRGLSAAALHGDMTQGARTRTLTNLRRGKVRFLV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + HV NFD+P AE+Y+HRIGRTGRAG G A + V+ D ++ I Sbjct: 299 ATDVAARGLDINGISHVINFDLPRAAEDYVHRIGRTGRAGATGVAISFVSPADAVYLQRI 358 Query: 361 EKLIEKKV 368 ++ + V Sbjct: 359 QRYTGQTV 366 >gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei NCTC 13177] Length = 430 Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae 7-10-1-b] Length = 530 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 160/382 (41%), Positives = 234/382 (61%), Gaps = 3/382 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS + AV GY PTP+Q + IPLVL+ D+ A TGTGKTA+F+LP+L+ Sbjct: 4 FADLGLSKDALAAVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPILST 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + R R PR L++ PTRELA Q+A + + + GG P+ Q K+L G Sbjct: 64 LPRVKGRNRAPRVLVVSPTRELAQQIARTCMQISRQTRHFTTTVFGGTPYGPQIKELRGG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+ D RG + ++++E+LV+DEADRMLDMGF+P + I P RQTLL Sbjct: 124 TDVLIATPGRLKDLMKRGVVNLSSVEVLVLDEADRMLDMGFLPDVTTIVDATPECRQTLL 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +QK + L +P +E+ TA+T+E F+ ++K LL+ +L+ + Sbjct: 184 FSATIDQSIQKNLGSLLNDPAMVEIARNGETAKTVEQ-FMMPIKNFNKP-ELLEAVLREK 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K + +L GF +IH + Q +R + L NF+ G ++VA+ Sbjct: 242 GSERI-IVFARTKNRTEDCAEALCDAGFRAESIHSDKSQGARRRALENFRRGKTSILVAT 300 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+ ARG+D+PDV HV NFD+P+ E+Y+HRIGRTGRAG G A + V +E + + IE+ Sbjct: 301 DVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEKGYAISFVTRETSRTLRDIER 360 Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384 LI K + ++ + L+P L K Sbjct: 361 LIGKDIPFMELETYELDPTLLK 382 >gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei DM98] Length = 434 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|189346086|ref|YP_001942615.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245] gi|189340233|gb|ACD89636.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245] Length = 418 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 234/370 (63%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L + ++ A+ + GY PTPIQ + IPL+L +D+ G AQTGTGKTA+F +P+L Sbjct: 1 MQFRSLAIIEPILQAIEEEGYQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAAFAIPVL 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L K + R R+LI+ PTRELA Q+ ++F+ YG++ LT ++ GG+ Q Sbjct: 61 QLLNAVKTNEKKRKIRSLIITPTRELAIQIGESFKAYGRHTGLTSTVIFGGVNQNPQTAS 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G D+LI TPGR+LD N+G L + NIE V+DEADRMLDMGFI I+ I + +P + Sbjct: 121 LQKGIDILIATPGRLLDLMNQGHLHLRNIEFFVLDEADRMLDMGFIHDIRKILAELPKKK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+ +++ + L NP + V SST E I + K LL L Sbjct: 181 QSLFFSATMPPEITRLAASILHNPVEVSVTPVSSTVEIINQQIF--FVDKGNKNNLLVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++QD +K ++F K + L K + AIHGN Q +R + L+NFKE T+++ Sbjct: 239 LKNQD-IKTALVFTRTKHGADKVVKYLLKHDITAAAIHGNKAQNARQRALTNFKEQTMRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ ++ +V NFD+ N AE Y+HRIGRTGRAG G A + E+ +++ Sbjct: 298 LVATDIAARGIDVDELEYVINFDMSNIAETYVHRIGRTGRAGAKGTAISFCDAEEKEYLR 357 Query: 359 AIEKLIEKKV 368 +EKLI KK+ Sbjct: 358 DVEKLIAKKI 367 >gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54] Length = 481 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 162/371 (43%), Positives = 237/371 (63%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F+D GL P ++ ++ + GY PTPIQ + IP+V++ DV G AQTGTGKTA+F LP+L Sbjct: 20 FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 79 Query: 61 --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + R P R LIL PTRELA QV ++ ++Y K L A++ GG+ Q + Sbjct: 80 LMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKE 139 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG +VL+ TPGR+LDH + + ++ + ILV+DEADRMLDMGF+P ++ I L+P Sbjct: 140 ALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 199 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT ++E++K+ ++L +P IEV ++TA TI +A +K A + Sbjct: 200 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQ--IAYKMSGDQKRAAVVH 257 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S+ +K I+F N K L LE+ G +IHG+ Q RMK L FK G ++ Sbjct: 258 LVKSRG-LKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELE 316 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ V V N+D+P AE+Y+HRIGRTGRAG G+A L ++ + + Sbjct: 317 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTADEERFL 376 Query: 358 DAIEKLIEKKV 368 IEKLI+++V Sbjct: 377 LDIEKLIKREV 387 >gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense YUAN-3] gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense YUAN-3] Length = 435 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 158/375 (42%), Positives = 239/375 (63%), Gaps = 6/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+P ++ A+ AGY +PTPIQ ++IP +L++ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MQFSQLQLNPSILKALAAAGYEQPTPIQEQSIPYILEKRDLLGTAQTGTGKTAAFAVPIL 60 Query: 61 TIL--EKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L E G++ R R L+L PTRELA Q+ ++F++Y + +L ++ GG+ Q Sbjct: 61 DLLCREHGQSTGSRHIRALVLSPTRELAIQIKESFDQYSRFLHLRNTVIFGGVSQIPQVS 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L G D+L+ TPGR+LD N+ + ++++ V+DEADRMLDMGFI + + +P Sbjct: 121 RLREGVDILVATPGRLLDLMNQRHVDLSHVSYFVLDEADRMLDMGFIHDVHKVVEKLPQN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM ++ ++++ L+NP ++ V SSTAET+E Y K LL Sbjct: 181 RQTLLFSATMPPDIARLADKLLKNPAQVSVAPVSSTAETVEQKLF--YVDKKNKKHLLVH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL++ D M++ ++F K + LEK G AIHGN Q +R + L FK I Sbjct: 239 LLKTAD-MESVLVFSRTKHGANKIVEHLEKAGIPSKAIHGNKSQSARQQALREFKSRKIH 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HV N+D+PN E Y+HRIGRTGRAG+ G AF+ +E+ ++ Sbjct: 298 VLVATDIAARGIDVTELSHVINYDLPNEPETYVHRIGRTGRAGQSGMAFSFCDEEEHDYL 357 Query: 358 DAIEKLIEKKVDWLN 372 IE+LI K + N Sbjct: 358 RTIERLIGKHIPVEN 372 >gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] Length = 472 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 165/375 (44%), Positives = 231/375 (61%), Gaps = 14/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL+ ++ AV D GY PTPIQ + IP VLQ D+ AQTGTGKTA F LP+L Sbjct: 4 LTFADLGLADPLLRAVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTLPLL 63 Query: 61 TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L GR PR L+L PTRELAAQV ++ Y K L ++ GG+ Sbjct: 64 QLLMCSPSHHAGR-----PRALVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNINP 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q K L D+L+ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ + + + Sbjct: 119 QIKALRAPVDILVATPGRLLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLAKL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ +++ L NPK +EV ++T E + KK L Sbjct: 179 PAQRQNLLFSATFSDEIKALADKLLDNPKLVEVARRNTTNELVSQK--VHLVDRDKKTEL 236 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ Q+ + ++F K L L+K G AIHGN Q +R + L++FK G Sbjct: 237 LIHLIREQNWFQV-LVFTRTKHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKSG 295 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +Q++VA+D+AARGLDI + HV NF++PN E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 296 ELQVLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSPGEALSLVCVDEF 355 Query: 355 KHIDAIEKLIEKKVD 369 + IEKLI+ ++ Sbjct: 356 SFLRDIEKLIKMSIE 370 >gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson] gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson] Length = 437 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 163/371 (43%), Positives = 238/371 (64%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFKTLGLSAEILRAVEEQGYREPTPIQRQAIPMVLAGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR--ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + A+ R P R LIL PTRELAAQ+ +N + Y K L ++ GG+ Q Sbjct: 61 QLLSQHEQPAKGRRPVRALILTPTRELAAQIGENVDAYSKYLRLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD + + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILVATPGRLLD-LEQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +D+++ ++ L NP +EV ++ +E IE + +K LL Q Sbjct: 180 RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVY--FVDKKRKRELLSQ 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ + D K ++F K +L L K G + AIHGN Q +R + L++FKEG I+ Sbjct: 238 MIGAGD-WKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKEGKIR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ K + Sbjct: 297 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLL 356 Query: 358 DAIEKLIEKKV 368 IE+L+++++ Sbjct: 357 RDIERLLKREI 367 >gi|238893853|ref|YP_002918587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae NTUH-K2044] gi|238546169|dbj|BAH62520.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 451 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 239/372 (64%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ AV + GYV+PTPIQ + IP VLQ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQV +N Y K N+ ++ GG+ Q Sbjct: 61 QRLIQNEPHAKGRRPVRALILTPTRELAAQVGENVCDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++E L NP +EV ++ +E I +H + ++K LL Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVH---FVDKNRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL+ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QLI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IE+L++K++ Sbjct: 357 LRDIERLLKKEI 368 >gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910] gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910] Length = 434 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 173/437 (39%), Positives = 256/437 (58%), Gaps = 23/437 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F DL L + A+ + GY PTPIQ ++IP +L D G AQTGTGKTA+F +P+L Sbjct: 1 MNFTDLNLIEPIAKAIQEQGYTTPTPIQERSIPDILDGRDFLGCAQTGTGKTAAFSIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K + + + LIL PTRELA Q+ +N YGK L ++ GG+ Q L+ Sbjct: 61 QNLSKNKIPNKHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD +G + + N+EI V+DEADRMLDMGF+ ++ + L+P RQT Sbjct: 121 KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRVIKLLPQRRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+QK++ + L NP ++EV SSTA+TI+ + + K LL +L+ Sbjct: 181 LFFSATMPGEIQKLANSILNNPVKVEVTPVSSTADTIKQSVY--FVEKDNKLNLLSHILK 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + ++F K + L+K S AIHGN Q +R L+NFK G +++V Sbjct: 239 N-DISDSVLVFARTKHGADKISRKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ V NF++ + +E Y+HRIGRTGRAG G + + V D+ ++ Sbjct: 298 ATDIAARGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLKNT 357 Query: 361 EKLIEKKV-----------DWLNGDLSSLNPPL----EKIDIAQHNHAR----KNNPIPQ 401 EKLI KK+ D + S N P+ EK + +N++R + P P Sbjct: 358 EKLIGKKIPVVKDHPFHTDDLVAQKRDSNNKPVPAGGEKPKASNNNNSRSGKNRKKPSPT 417 Query: 402 KSTGFDRRK-KNYSSQK 417 S GF + K KN++ +K Sbjct: 418 ASVGFKKPKNKNFTRKK 434 >gi|330818246|ref|YP_004361951.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia gladioli BSR3] gi|327370639|gb|AEA61995.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia gladioli BSR3] Length = 505 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 235/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L A R R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 QRLNASTAAQAGGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + ++ ++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLARLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIYPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK GT+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLGKDGISALAIHGNKSQSARTRALTEFKAGTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV N+++PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IEKLI++++ Sbjct: 358 LRDIEKLIKREI 369 >gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp. M18] gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18] Length = 442 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 172/417 (41%), Positives = 246/417 (58%), Gaps = 15/417 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L LS +V A+ GY +PTPIQ ++IPL L D+ G AQTGTGKTASFVLP L Sbjct: 1 MSFESLNLSAPLVKAINACGYTEPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L AR + PR L+L PTRELA QV D + YGK + ++GG+P+ Q L Sbjct: 61 ERLLVPSPARGKGPRILVLTPTRELANQVVDAVKTYGKFMRVRCGSILGGMPYREQMMLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++DH +R + + +E+LV+DEADRMLDMGF + I + P RQ Sbjct: 121 SQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIAAAAPAERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLF+ATM D + K+++ L++P R+ V+ T +IE T K LLQ L+ Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVDGQQLTNLSIEQRLHVT-DDMRHKNRLLQHLV 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 K IIF KK+ L L QG + A+HG++ Q +R + ++N + G ++L+ Sbjct: 240 ADASVTK-AIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKVRLL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P AE+Y+HRIGRTGRAG G A + + ++ ++D Sbjct: 299 VATDVAARGLDVSGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDR 358 Query: 360 IEKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 IE+L K + + L P PL + + ARK P FD RKK ++ Sbjct: 359 IERLTGKPLPQHV--IEGLEPSRPLRR--NSGGPGARKGRP------SFDPRKKGFA 405 >gi|327393211|dbj|BAK10633.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355] Length = 449 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 162/374 (43%), Positives = 237/374 (63%), Gaps = 6/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL 60 Query: 61 TILEK--GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L G R R P R LIL PTRELAAQV +N +Y K L ++ GG+ Q Sbjct: 61 QKLSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++ +E+LV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++E L NP+++EV ++ +E + + +K LL Q Sbjct: 181 RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVSQQV--HFVDKKRKRELLSQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + + ++F K +L L K G + AIHGN Q +R + L++FK G I+ Sbjct: 239 LI-GEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA G A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357 Query: 358 DAIEKLIEKKVDWL 371 IE+L+++++ L Sbjct: 358 RDIERLLKREIPRL 371 >gi|313906550|ref|ZP_07839880.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens 6] gi|313468619|gb|EFR63991.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens 6] Length = 524 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 262/446 (58%), Gaps = 33/446 (7%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ AV+ AGY + TPIQ KT+P++L+ D+ AQTGTGKTA+F LP+L Sbjct: 1 MKFQELDLKQELQNAVVKAGYTEATPIQEKTMPVILEGRDLIACAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ G VR R+L+L PTRELA Q+ +NF+KYG+ L + GG + Q + L Sbjct: 61 EKLDNGE--VRKLRSLVLTPTRELAVQIFENFKKYGRYLPLRAVCIYGGAKQKPQMEALR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ T GR++D+ N G + + IEI V+DEADRMLDMGFI ++ I + RQT Sbjct: 119 RGCDILVATLGRLMDYMNLGLVSLKGIEIFVLDEADRMLDMGFINDVRKIAGSMNTDRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQL 238 L+FSATM E++++ L++P + V S+ A+T++ CFV +S K +L ++ Sbjct: 179 LMFSATMPKEIEQLGRELLRDPADVRVAPQSTAADTVDQKICFVG----HSDKLKVLAEI 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++ + IIF K + +L + G + AIHG+ Q R L +K G + Sbjct: 235 LKQEEVTRT-IIFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHV 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGLDIP+V HV NF++P E YIHRIGRTGRAG G A TL ++++ + Sbjct: 294 LVATDVASRGLDIPEVSHVINFNLPQEPEAYIHRIGRTGRAGESGIAITLCEEDEMDLLK 353 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 +EK++++++ P K + + +KN +P + G RRK +S K+ Sbjct: 354 EVEKILKREI------------PEMKTEYSIVLRGKKNGAVP--AAGDRRRKVGKTSGKA 399 Query: 419 ----------HIPLKESEKISKLQQD 434 +P ++ E +S+ +D Sbjct: 400 GGSGERRNNGAVPARKRENLSRGTED 425 >gi|294142025|ref|YP_003558003.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea DSS12] gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea DSS12] Length = 427 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 163/383 (42%), Positives = 241/383 (62%), Gaps = 15/383 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+ L L P+++ + + GY +PTPIQ + IP +L D+ AQTG+GKTA+F LP+L Sbjct: 13 FSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFALPILNK 72 Query: 62 -----ILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L+K A+ R L+L PTRELA QV +F KY K + AL+ GG+ Sbjct: 73 LTAQICLQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKSALVYGGVSI 132 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 +AQ + L G D+L+ TPGR+LDH RG L +N +E LV DEADRMLDMGF I I Sbjct: 133 DAQAQILAAGVDILVATPGRLLDHLRRGSLNLNQLEFLVFDEADRMLDMGFKDEIDAIVK 192 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 +P TRQTLLFSAT + + +S++ L++PK+IEV ++ A I+ A +K Sbjct: 193 QLPKTRQTLLFSATFDESIYGLSQSLLRDPKQIEVGERNAAAVEIDQRVYAV--DSDRKL 250 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 AL+ L++S + ++ +IF +K L +L K G S A HG++ Q +R K+L FK Sbjct: 251 ALVTHLIESGN-LQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGAREKVLQGFK 309 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 +G ++++VA+D+AARG+DI D+ +V N+++P +AE+Y+HRIGRTGRAG G A TL+ E Sbjct: 310 DGEVRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNKGLAITLLCSE 369 Query: 353 DIKHIDAIEKLIEKKV--DWLNG 373 D ++ +E +++K++ WL G Sbjct: 370 DEHLLEEVEVVLDKRLPQQWLAG 392 >gi|313675971|ref|YP_004053967.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM 4126] gi|312942669|gb|ADR21859.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM 4126] Length = 439 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 167/419 (39%), Positives = 258/419 (61%), Gaps = 9/419 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+ ++ A+ D GY KP+ IQ+K IP +L HDV GIAQTGTGKTA+FVLP+L Sbjct: 8 FQDFKLNKQLFNAIDDLGYQKPSEIQVKAIPRILNGHDVIGIAQTGTGKTAAFVLPLLMK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ A+ PR LI+ PTREL QV +N + GK +L L GGI + Q +++ G Sbjct: 68 LK--YAQGHDPRALIIAPTRELVMQVYENILELGKYTDLRTVCLYGGIGPKKQAQEVAEG 125 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR+LD ++ G L I+ ++DEADRM+DMGF+P I+ + L+P +Q L Sbjct: 126 CDIIVATPGRLLDIYSAGVLQPKQIKTFILDEADRMMDMGFMPQIRRVLELLPMKKQNLF 185 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++++K + F P+++EV + TAE IE + K LL+ L +++ Sbjct: 186 FSATFPEKVEKYAYEFTDFPEKVEVTPETMTAELIEQSLYHV-PNFLTKINLLKYLFENE 244 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D +IF +KN N+ +E++ V IH N Q +R+ ++ FK G ++++V+ Sbjct: 245 D-FSRVLIFVRTRKNANNVYSFIERKISEEVRVIHANKAQSTRINAINEFKSGNVRVLVS 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARG+D+ +V HV NF+VPN+ E+Y+HRIGRTGRA HG A + V D+ HI+ IE Sbjct: 304 TDVTARGIDVEEVSHVINFEVPNKYEDYVHRIGRTGRAEHHGIAISFVDPSDVYHINKIE 363 Query: 362 KLIEKKVDWLN--GDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTGF-DRRKKNYSSQ 416 +LI+KK+ ++ ++ ++ P EK D+ Q +K+ P F +++KKN S + Sbjct: 364 ELIQKKIKVIDLPKEIELMDTLPSEKKDMEQEIDRQKHLENPDFQGAFHEKKKKNLSGK 422 >gi|299067900|emb|CBJ39113.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CMR15] Length = 548 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 164/376 (43%), Positives = 238/376 (63%), Gaps = 11/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY +PTPIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L + +V+ P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 61 HRLSAVQPNKVQTPNGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L+RG D+++ TPGR+LDH + + +++IE+LV+DEADRMLDMGFI I+ I + Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +D+++ +++ L P IEV ++TAET+E +K Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 238 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L+ D ++F K L L + G AIHGN Q +R + LS FK Sbjct: 239 ELLAKLVSDND-WHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFK 297 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT++++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV + Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357 Query: 353 DIKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 358 EHGLLRDIERLIKREL 373 >gi|84515959|ref|ZP_01003320.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53] gi|84510401|gb|EAQ06857.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53] Length = 447 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 160/382 (41%), Positives = 237/382 (62%), Gaps = 5/382 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF LGL+P+++ + + G PTPIQ + IP + DV G+AQTGTGKTA+F LPM+ Sbjct: 2 MDFDMLGLAPRLIAVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI 61 Query: 61 TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K + + R L+L PTRELA Q+ADN Y K +L VAL++GG AQ K+ Sbjct: 62 HALMKAGVKPNPKAVRGLVLAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGITAQTKR 121 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+L+ TPGR++D +R + ++ LV+DEAD+MLDMGFI ++ I L+ R Sbjct: 122 LAGGVDLLVATPGRLIDLLDRRAVRLDETVYLVLDEADQMLDMGFIHALRRIAPLLAKDR 181 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT++FSATM + ++++ FL + R++VN P + I V AQ +K L+ L Sbjct: 182 QTMMFSATMPKLMSELADAFLTDAVRVQVNPPGQAVKKIAQS-VHFVAQAAKTDLLVDLL 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +D + ++F K L +LE +GF+ +IHGN Q R + + FK G +++ Sbjct: 241 DKHRDEL--ALVFGRTKHGCEKLYKTLEAKGFAAASIHGNKSQGQRERAIEAFKAGKVRV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DIP V HV+N+D+PN AENY+HRIGRT RAG G A LVA +++ + Sbjct: 299 LVATDVAARGIDIPGVRHVYNYDLPNVAENYVHRIGRTARAGADGSAIALVAPDEMIELQ 358 Query: 359 AIEKLIEKKVDWLNGDLSSLNP 380 IEK +++ + +G + P Sbjct: 359 DIEKAMKETIPVASGRPWEIMP 380 >gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 576] gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 576] Length = 485 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 7894] Length = 416 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei B7210] Length = 427 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|126734915|ref|ZP_01750661.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2] gi|126715470|gb|EBA12335.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2] Length = 435 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 165/386 (42%), Positives = 238/386 (61%), Gaps = 5/386 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF LGL+P++V + + G PTPIQ + IP + DV G+AQTG+GKTA+F LPM+ Sbjct: 1 MDFDMLGLAPRLVNVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGSGKTAAFGLPMI 60 Query: 61 TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K + + R LIL PTRELA Q+ADN Y K +L VAL++GG AQ K+ Sbjct: 61 HALMKAGVKPNPKTSRGLILAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGIVAQTKR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+L+ TPGR++D +R + ++ LV+DEAD+MLDMGFI ++ I L+ R Sbjct: 121 LAGGVDLLVATPGRLIDLLDRRAVRLDETIYLVLDEADQMLDMGFIHALRRIAPLLAKDR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT++FSATM + +++ +L + R++VN P + I V AQ +K L++ L Sbjct: 181 QTMMFSATMPKLMGELAGTYLTDAVRVQVNPPGQAVKKINQS-VHFVAQAAKTDLLIELL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +D + I+F K L LEK+GF+ +IHGN Q R + L FK G ++ Sbjct: 240 DKHRDEL--AIVFGRTKHGCEKLYKVLEKKGFAAASIHGNKSQGQRQRALEAFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIPDV V+N+D+PN AENY+HRIGRT RAG G A LVA +++ + Sbjct: 298 LVATDVAARGLDIPDVRFVYNYDLPNVAENYVHRIGRTARAGADGSAVALVAPDEMIELK 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 IEK +++ + +G + P +K Sbjct: 358 DIEKAMKETIPVASGREWEIQPGQKK 383 >gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111] gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212] gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154] gi|215919015|ref|NP_819700.2| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 493] gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493] gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111] gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212] gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154] Length = 420 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 172/407 (42%), Positives = 251/407 (61%), Gaps = 13/407 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +++ A+ + GYV+PTP+Q + IP++LQ DV AQTGTGKTA F LP+L Sbjct: 10 MSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 69 Query: 61 TILEKGRA---RVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L R R P R LIL PTRELA QV + YGK L ++ GG+ + Q Sbjct: 70 QRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 129 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L RG D+L+ TPGR+LD N+G L ++ +E V+DEADRMLDMGF+P I+ I L+P Sbjct: 130 INHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +RQ LLFSAT + E++++++ L +P IEV ++ A I H V +K LL Sbjct: 190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITH--VVHPVDRQRKRELL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ S++ + ++F K L LE G S AIHGN Q +RM+ L+ FK+G Sbjct: 248 SFMIGSKN-WRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGK 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+AARGLDI + HV NF++P+ A++Y+HR+GRTGRA G A +LV+ ++++ Sbjct: 307 IRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVR 366 Query: 356 HIDAIEKLIEKKV--DWLNGDLSS---LNPPLEKIDIAQHNHARKNN 397 + IEKL++ K+ + + G S P++ + A+ N KNN Sbjct: 367 LLRDIEKLLQSKMPQEVIPGYEPSPFTKAAPVQAVRRARSNQRGKNN 413 >gi|115525740|ref|YP_782651.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115519687|gb|ABJ07671.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris BisA53] Length = 490 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 171/423 (40%), Positives = 242/423 (57%), Gaps = 13/423 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F GL+ + A+ + Y PTPIQ +TIPL L DV GIAQTGTGKTASF LP+L Sbjct: 17 SFQVFGLAEPLTRALAEENYTTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 76 Query: 62 ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + + R + +P+T L+L PTREL+ Q+ ++F YG++ L AL IGG+P Q + Sbjct: 77 RMLENRIKP-LPKTCRVLVLSPTRELSGQILESFNAYGRHIRLASALAIGGVPMGRQVRS 135 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + G DVL+ TPGR+LD L + +E LV+DEADRMLDMGFI I+ I + +P R Sbjct: 136 IMPGLDVLVATPGRLLDLVQTNALKLTQVEFLVLDEADRMLDMGFIHDIRKIVAKLPIKR 195 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM ++ ++E L++P R+ V +ST + I + +S K +L Q+ Sbjct: 196 QTLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVDRITQRVI--QLDHSAKPTVLAQI 253 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ QD + ++F K + L + G + AIHGN Q R ++L+ F+ G I Sbjct: 254 LK-QDDVNRALVFTRTKHGADKVVKGLARAGIAAEAIHGNKSQNHRERVLAAFRTGEILT 312 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ V HV NFD+PN E Y+HRIGRT RAG G A +L A E++ ++ Sbjct: 313 LVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGVAISLCAGEELAYLR 372 Query: 359 AIEKLI------EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 IEKLI E + + D ++ P A H HA + P RR+ Sbjct: 373 DIEKLIRITLPREDRRTPGHRDTAAKTSPHRGAHAAPHVHAPRGEHAPGSKAANRRRRPA 432 Query: 413 YSS 415 S Sbjct: 433 GGS 435 >gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 471 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 165/364 (45%), Positives = 225/364 (61%), Gaps = 5/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L + AV + GY KPTPIQI+ IPL+L HD+ G AQTGTGKTA+F LPM+ Sbjct: 8 FSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIHN 67 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L RA+ + PR+L+L PTRELA QV ++F YGK + A++ GG+ Q K + Sbjct: 68 LISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQAKAIA 127 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR++D N+ + + N+EI V+DEADRMLDMGFI I+ I S +P RQ Sbjct: 128 SGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKRRQN 187 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++ + L P RI+V SST E I + Y + + K LL L + Sbjct: 188 LFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVM--YTELADKKNLLLHLFK 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ K IIF K + L K G IHGN Q +R + L +F+ G + +V Sbjct: 246 DKN-FKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRALV 304 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+DLAARG+DI D+ HV N+++P E Y+HRIGRT RAG++G A + ++ I I Sbjct: 305 ATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIKDI 364 Query: 361 EKLI 364 EK+I Sbjct: 365 EKVI 368 >gi|119510127|ref|ZP_01629266.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414] gi|119465188|gb|EAW46086.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414] Length = 437 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 169/377 (44%), Positives = 234/377 (62%), Gaps = 10/377 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +++ AV + GY +PTPIQ++ IP VL D+ AQTGTGKTA F LPML Sbjct: 1 MSFSTLGLSHEIIRAVTEQGYTEPTPIQMQAIPAVLSGSDLLAGAQTGTGKTAGFTLPML 60 Query: 61 TILE-----KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L K + P R LIL PTRELAAQV + YGK L ++ GG+ Sbjct: 61 HRLSSDKNVKSTSHGYSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINP 120 Query: 115 QNKKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L+ G D+L+ TPGR+LDH +G + +++IEILV+DEADRMLDMGFI I+ I SL Sbjct: 121 QKRLLKEGRVDILVSTPGRLLDHVQQGTVNLSHIEILVLDEADRMLDMGFIRDIRRILSL 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLF AT +++++ ++ L PK IEV + TA+T+ KK Sbjct: 181 LPKQRQNLLFFATFSEKIKALAAGLLNRPKMIEVARRNVTADTVTQKVYKV--DRDKKRQ 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L++ QD ++F K L L ++ AIHGN Q SR L+ FK Sbjct: 239 LLAHLIR-QDNWYQVLVFTRTKYGADRLVKQLGEERIQALAIHGNKSQSSRTHTLAKFKN 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++Q++VA+D+AARGLDI ++ HV NFD+PN AE+Y+HRIGRTGRAG G+A +LV+ ++ Sbjct: 298 NSLQVLVATDIAARGLDISELPHVVNFDLPNVAEDYVHRIGRTGRAGASGEAISLVSADE 357 Query: 354 IKHIDAIEKLIEKKVDW 370 + IEKLI +++ + Sbjct: 358 YHLLADIEKLIAQRLPF 374 >gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 112] Length = 419 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 14] gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 9] Length = 414 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium] Length = 446 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 159/366 (43%), Positives = 233/366 (63%), Gaps = 4/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ AV D GY P+PIQ + IP VL+ DV AQTGTGKTA F LP+L Sbjct: 10 MSFSTLGLSESLLKAVADEGYTAPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLL 69 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG+ A+ R L+L PTRELAAQVA++ + YGK NL A++ GG+ Q +L Sbjct: 70 HGLSKGQPAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRL 129 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+LI TPGR+LD + + + +E+L++DEADRMLDMGFI I+ I +P RQ Sbjct: 130 RKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPKKRQ 189 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT +++++ +++ + NP I V +STA ++ ++K LL +L+ Sbjct: 190 NLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPV--DKNQKRHLLVELI 247 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + ++F K+ L LEK+ AIHGN Q +R + LS FK G ++++ Sbjct: 248 -NQHNWEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVL 306 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N D+P A++Y+HRIGRTGRAG G+A +LV+ ++ + + Sbjct: 307 VATDIAARGLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQD 366 Query: 360 IEKLIE 365 IE+LI+ Sbjct: 367 IERLIQ 372 >gi|222110403|ref|YP_002552667.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus TPSY] gi|221729847|gb|ACM32667.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY] Length = 578 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 165/404 (40%), Positives = 249/404 (61%), Gaps = 20/404 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IP VL HD+ AQTGTGKTA+F LPML Sbjct: 1 MTFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L +G+A + R L+L PTRELAAQV ++ YGK +L ++ GG+ Q Sbjct: 61 HRLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++++RG DVL+ TPGR+LD +G + ++ +EILV+DEADRMLDMGFI ++ + +L+P Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 ++Q+LLFSAT +D++++++ + L+NP+ I+V ++T + I V KK +L Sbjct: 181 QSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQ--VIHPVGRGKKKQVL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++Q D ++F K N+ L K G S A+HGN Q +R + L FK G Sbjct: 239 LHIIQEHD-WSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQ 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI D+ HV N+++PN E+Y+HRIGRTGRAGR G A +LV ++ Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEG 357 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399 + IE+ ++++ P++ ID + K PI Sbjct: 358 FMMEIERFTKQEI------------PVQVIDGFGPDEGEKAEPI 389 >gi|121594947|ref|YP_986843.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp. JS42] gi|120607027|gb|ABM42767.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42] Length = 577 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 165/404 (40%), Positives = 249/404 (61%), Gaps = 20/404 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IP VL HD+ AQTGTGKTA+F LPML Sbjct: 1 MTFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L +G+A + R L+L PTRELAAQV ++ YGK +L ++ GG+ Q Sbjct: 61 HRLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++++RG DVL+ TPGR+LD +G + ++ +EILV+DEADRMLDMGFI ++ + +L+P Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 ++Q+LLFSAT +D++++++ + L+NP+ I+V ++T + I V KK +L Sbjct: 181 QSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQ--VIHPVGRGKKKQVL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++Q D ++F K N+ L K G S A+HGN Q +R + L FK G Sbjct: 239 LHIIQEHD-WSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQ 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI D+ HV N+++PN E+Y+HRIGRTGRAGR G A +LV ++ Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEG 357 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399 + IE+ ++++ P++ ID + K PI Sbjct: 358 FMMEIERFTKQEI------------PVQVIDGFGPDEGEKAEPI 389 >gi|17545258|ref|NP_518660.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000] gi|17427549|emb|CAD14067.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum GMI1000] Length = 540 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 164/376 (43%), Positives = 239/376 (63%), Gaps = 11/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY +PTPIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA-RVRMP-------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L + +V+ P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 61 HRLSAVQPNKVQTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L+RG D+++ TPGR+LDH + + +++IE+LV+DEADRMLDMGFI I+ I + Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +D+++ +++ L P IEV ++TAET+E +K Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 238 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L+ D + ++F K L L + G AIHGN Q +R + LS FK Sbjct: 239 ELLAKLVSDNDWHQV-LVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFK 297 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT++++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV + Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357 Query: 353 DIKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 358 EHGLLRDIERLIKREL 373 >gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278] gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene) [Bradyrhizobium sp. ORS278] Length = 473 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 163/366 (44%), Positives = 229/366 (62%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+ + A+ + Y PTPIQ +TIPL LQ DV GIAQTGTGKTASF LP+L Sbjct: 4 FQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILHR 63 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R + + R L+L PTREL+ Q+ D+F YG++ L+ L IGG+P Q + + Sbjct: 64 LLENRIKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLSSTLAIGGVPMGRQVRAVM 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR+LD L ++++E LV+DEADRMLDMGFI I+ I + +P RQT Sbjct: 124 PGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ +++++ L++P R+ V SST E I + +S K +LL QLL+ Sbjct: 184 LFFSATMPKDIAELADSMLRDPARVAVTPVSSTVERIAQRVI--QVDHSAKPSLLAQLLK 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + ++F K + LEK G AIHGN Q R + L+ F+ G I+ +V Sbjct: 242 N-EPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED-IKHIDA 359 A+D+AARG+D+ V HV NFD+PN E Y+HRIGRT RAG G A +LVA D + ++ Sbjct: 301 ATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADEMSYLRD 360 Query: 360 IEKLIE 365 IE+L + Sbjct: 361 IERLTK 366 >gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium 1_1_47] gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis YIT 11859] gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium 1_1_47] gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis YIT 11859] Length = 458 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 169/372 (45%), Positives = 234/372 (62%), Gaps = 12/372 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58 +F GL+P ++ A+ GY KPT IQ K IP+VLQ DV G AQTGTGKTASF LP Sbjct: 6 NFEQFGLAPNLLSAIKRMGYTKPTAIQCKAIPVVLQGRDVMGAAQTGTGKTASFGLPVLQ 65 Query: 59 -MLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L + + R P R LIL PTRELA Q A+ Y + + + ++ GG+ + Q Sbjct: 66 KLLPLANTSTSPARHPVRVLILSPTRELADQTAEALSNYAADTPIRIGVVYGGVDIKPQA 125 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L +G ++LI TPGR+LDH + +N I+++DEADRMLDMGF+P I I + +P Sbjct: 126 EALRKGVEILIATPGRLLDHLEQRNTNLNQSGIVILDEADRMLDMGFLPDISRILNALPK 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ L+FSAT + E++K++ NFL +P IEV ++TA TI+ V + + K AL+ Sbjct: 186 KRQNLMFSATFSPEIKKLAGNFLTDPVVIEVARQNATAATIKQE-VFSVNELQKTDALV- 243 Query: 237 QLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 +LL+++ +G I+F N K L LEK GF+ AIHG+ Q R+K+L +F Sbjct: 244 ELLKTRGEDPDGKPLQTIVFVNAKLTARRLARELEKCGFNADAIHGDKTQEERLKLLKDF 303 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K+GT+ +MVA+D+AARGLDI ++ V N+DVP E+Y+HRIGRTGRAG G A LV Sbjct: 304 KDGTLNIMVATDVAARGLDIAELPLVINYDVPFVPEDYVHRIGRTGRAGSSGLALMLVTD 363 Query: 352 EDIKHIDAIEKL 363 +D K DAI KL Sbjct: 364 KDKKSFDAIRKL 375 >gi|300692445|ref|YP_003753440.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07] gi|299079505|emb|CBJ52183.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07] Length = 549 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 164/376 (43%), Positives = 239/376 (63%), Gaps = 11/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K+V AV + GY +PTPIQ + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRAR-------VRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L + +R P R L+L PTRELAAQV ++ YGK L ++ GG+ Sbjct: 61 HRLSAVQPNKVHTSHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L+RG D+++ TPGR+LDH + + +++IE+LV+DEADRMLDMGFI I+ I + Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 ++P RQ LLFSAT +D+++ +++ L P IEV ++TAET+E +K Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPV--DRERKR 238 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L++ D + ++F K L L + G AIHGN Q +R + LS FK Sbjct: 239 ELLAKLVRDNDWHQV-LVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFK 297 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT++++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV + Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357 Query: 353 DIKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 358 EHGLLRDIERLIKREL 373 >gi|296157319|ref|ZP_06840155.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] gi|295892655|gb|EFG72437.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] Length = 520 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 165/373 (44%), Positives = 233/373 (62%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSEQLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L A R R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 QRLNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L G D+++ TPGR+LDH + + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT +DE++ +++N L +P IEV ++TAE++ KK LL Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAESVAQKIHPV--DRDKKRELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ + + ++F K L L K G + AIHGN Q +R + L+ FK+GT Sbjct: 239 THLIKQHNWFQV-LVFTRTKHGANRLAEQLTKDGINSLAIHGNKSQSARTRALAEFKDGT 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+DI + HV N+D+PN E+Y+HRIGRTGRAG G+A +LV ++++ Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQ 357 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ V Sbjct: 358 LLKDIEKLIKRPV 370 >gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7] gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7] Length = 455 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 165/371 (44%), Positives = 230/371 (61%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D GL P V+ AV + GY PTPIQ + +P+V+ DV G AQTGTGKTA+F LP+L Sbjct: 14 FSDFGLHPSVLQAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPILHR 73 Query: 63 LEK----GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + R P R LIL PTRELA QVAD+ Y K L ++ GG+ Q Sbjct: 74 LMQFANTSASPARHPVRALILTPTRELADQVADSVTTYAKFTPLRSTVVFGGVDIGPQRD 133 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG ++LI TPGR+LDH + + ++ + ILV+DEADRMLDMGF+P + I L+P Sbjct: 134 ALRRGCEILIATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPAK 193 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT ++E++K+ ++L NP IEV ++TA+T+ +A S K A + Sbjct: 194 RQGLLFSATFSNEIRKLGRSYLSNPAEIEVAARNATADTVTQ--IAYPLAGSDKRAAVVH 251 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S+ I+F N K L L + G +IHG+ Q RMK L FK G ++ Sbjct: 252 LVKSRG-FNQVIVFSNTKIGTSRLARELVRDGVKAESIHGDKSQLDRMKALDAFKAGELE 310 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ V V N+D+P AE+Y+HRIGRTGRAG G+A E+ +++ Sbjct: 311 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGNTGEAIAFFTPEEERYL 370 Query: 358 DAIEKLIEKKV 368 IEKLI+ K+ Sbjct: 371 LDIEKLIKAKI 381 >gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC 43553] gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC 43553] Length = 493 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 163/380 (42%), Positives = 238/380 (62%), Gaps = 8/380 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FAD GL P ++ ++ + GY PTPIQ + IP+V++ DV G AQTGTGKTA+F +P+L Sbjct: 19 FADFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILHR 78 Query: 61 --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + R P R LIL PTRELA QV ++ ++Y K L A++ GG+ Q + Sbjct: 79 LMPLANASASPARHPVRALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQKE 138 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG ++L+ TPGR+LDH + + ++ + ILV+DEADRMLDMGF+P ++ I L+P Sbjct: 139 ALRRGCEILVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT ++E++K+ ++L P IEV ++TA TI +A K A + Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATATTITQ--IAYKMSSDAKRAAVVH 256 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S+ +K I+F N K L LE+ G +IHG+ Q RMK L FK G ++ Sbjct: 257 LVKSRG-LKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGDLE 315 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ V V N+D+P AE+Y+HRIGRTGRAG G+A L ++ + + Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFL 375 Query: 358 DAIEKLIEKKVDWLNGDLSS 377 IEKLI+++V DL + Sbjct: 376 LDIEKLIKREVPRGTLDLPA 395 >gi|194442237|ref|YP_002040055.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194400900|gb|ACF61122.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 453 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|197265494|ref|ZP_03165568.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243749|gb|EDY26369.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 453 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC 51756] gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC 51756] Length = 429 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 157/369 (42%), Positives = 231/369 (62%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL P + A + GY + TPIQ + IP +L+ HD+ AQTGTGKTA+F LP+L Sbjct: 20 FTELGLDPALCAAAVARGYEQATPIQARAIPEILKGHDILAAAQTGTGKTAAFALPILHR 79 Query: 63 LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R R LIL PTRELAAQV DN Y + +LIGG+ Q ++L Sbjct: 80 LARDPVSSGPRPVRALILVPTRELAAQVEDNIRLYRGQMPVRSLMLIGGVKIGPQMEQLR 139 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+++ TPGR+LDH + L ++ +E LV+DEADRMLDMGFI I+ I ++P RQ Sbjct: 140 NGADIVVATPGRLLDHLQQRSLRLDRVETLVLDEADRMLDMGFIRDIRRIIGMLPAKRQN 199 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + E+++++E L P +EV ++T ++I + +K LL L+ Sbjct: 200 LLFSATFSPEIRQLAEGLLHQPIAVEVTPANATVDSITQRVI--RVDQERKRDLLLHLMD 257 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + +IF K L +E++GFS AIHGN Q +R + L+ FK G+++ +V Sbjct: 258 AHQWHQV-LIFTRTKHGADRLARQMEREGFSAMAIHGNKSQGARTRALAEFKSGSLRALV 316 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V NF++P AE+Y+HRIGRTGRAG G+A +LV+ E+ + A+ Sbjct: 317 ATDIAARGIDIQRLPRVVNFELPQVAEDYVHRIGRTGRAGEDGEAVSLVSGEERSQLQAV 376 Query: 361 EKLIEKKVD 369 E+L+ ++ D Sbjct: 377 ERLLRRRFD 385 >gi|168236748|ref|ZP_02661806.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735725|ref|YP_002113911.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711227|gb|ACF90448.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290147|gb|EDY29504.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 453 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1] gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1] Length = 439 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 157/369 (42%), Positives = 231/369 (62%), Gaps = 5/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DFA L L ++ A+ AGY PTPIQ + IP +L D+ GIAQTGTGKTA+F LP+L Sbjct: 3 DFASLNLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPILN 62 Query: 62 ILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KGR PR LIL PTRELA+Q+ ++ YGK+ T ++ GG+ + Q + L Sbjct: 63 KLSQIKGRPAPNAPRALILTPTRELASQIGNSIAVYGKHVPTTHTVVFGGVGKQPQIRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR+LD + ++ I++ V+DEADRMLDMGFI I+ I ++P R Sbjct: 123 SRGVDILVATPGRLLDLMGERHVRLDQIQVFVLDEADRMLDMGFIHDIRRIIKVIPAKRH 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++ +++E L NP ++EV S+T E I + + K +LL+ +L Sbjct: 183 TLLFSATMPKDIAELAEGLLTNPAKVEVTPESTTVERITQKVL--FVDKQNKRSLLKNVL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++++ ++F K + L+K + AIHGN Q +R K L F++G ++++ Sbjct: 241 E-HESIEQVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV NFD+PN +E+Y+HRIGRT RAGR G A + E+ ++ Sbjct: 300 VATDIAARGIDVAGISHVINFDLPNESESYVHRIGRTARAGRDGNAISFCDAEERGYLLD 359 Query: 360 IEKLIEKKV 368 IEK I + V Sbjct: 360 IEKTIRQTV 368 >gi|161614932|ref|YP_001588897.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168230715|ref|ZP_02655773.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168820033|ref|ZP_02832033.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194471685|ref|ZP_03077669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|200390413|ref|ZP_03217024.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|161364296|gb|ABX68064.1| hypothetical protein SPAB_02686 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194458049|gb|EDX46888.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|199602858|gb|EDZ01404.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205334823|gb|EDZ21587.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343118|gb|EDZ29882.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085093|emb|CBY94880.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17; RNA-dependent helicase p72; DEAD box protein p72 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 454 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|145589523|ref|YP_001156120.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047929|gb|ABP34556.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 426 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 175/414 (42%), Positives = 248/414 (59%), Gaps = 7/414 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGLS ++ A+ + GY PTPIQ K+IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MLFTDLGLSEPILRAIAEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K + R+ R LIL PTRELAAQV ++ YGK L ++ GG+ Q K Sbjct: 61 QRLSSIKASSGKRVLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + G D+L+ TPGR+LD ++ + +N+IEILV+DEADRMLDMGF+ I+ I + +P R Sbjct: 121 IAAGLDILVATPGRLLDLMSQKCVSLNDIEILVLDEADRMLDMGFLRDIKKILAALPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + E++ +++ L P+ IEV +S E I ++K LL L Sbjct: 181 QNLLFSATFSTEIKALADGLLNKPELIEVARSNSANEAIAQLI--HPVDRNQKHPLLAHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++S D K ++F K L LEK G + AIHGN Q +R K L++FK G + Sbjct: 239 IKSND-WKQVLVFTRTKHGANKLVTQLEKDGITSMAIHGNKSQTARTKALADFKAGKLTA 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV N+D+PN +E+Y+HRIGRTGRAG +G A +LV ++ + + Sbjct: 298 LVATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLR 357 Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 IEKLI++K+ + + G N + I + H + P S G +K Sbjct: 358 DIEKLIKQKLPQEVIAGFEPDPNAIAQPIQLRSQQHQQSRRPKVAGSGGAPAKK 411 >gi|56414080|ref|YP_151155.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167550495|ref|ZP_02344252.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168240684|ref|ZP_02665616.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263681|ref|ZP_02685654.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466416|ref|ZP_02700278.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194451116|ref|YP_002044848.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197363003|ref|YP_002142640.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243732|ref|YP_002214783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207856257|ref|YP_002242908.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|56128337|gb|AAV77843.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409420|gb|ACF69639.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631083|gb|EDX49669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094480|emb|CAR59997.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197938248|gb|ACH75581.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205324518|gb|EDZ12357.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205339744|gb|EDZ26508.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347690|gb|EDZ34321.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708060|emb|CAR32351.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|322616296|gb|EFY13205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619546|gb|EFY16421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622758|gb|EFY19603.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628670|gb|EFY25457.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631607|gb|EFY28363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637134|gb|EFY33837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641666|gb|EFY38302.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644539|gb|EFY41079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322654208|gb|EFY50531.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658123|gb|EFY54390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663597|gb|EFY59799.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670333|gb|EFY66473.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671569|gb|EFY67691.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676925|gb|EFY72992.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682850|gb|EFY78869.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686529|gb|EFY82511.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194574|gb|EFZ79767.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199095|gb|EFZ84191.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202050|gb|EFZ87109.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208924|gb|EFZ93861.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213909|gb|EFZ98679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215239|gb|EFZ99984.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220842|gb|EGA05280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227299|gb|EGA11467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229917|gb|EGA14040.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233142|gb|EGA17238.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240877|gb|EGA24919.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243194|gb|EGA27214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248733|gb|EGA32661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251737|gb|EGA35604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323261448|gb|EGA45029.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267879|gb|EGA51358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|326622538|gb|EGE28883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 453 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|16759741|ref|NP_455358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142486|ref|NP_805828.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163843|ref|ZP_03349553.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424785|ref|ZP_03357535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213854569|ref|ZP_03382809.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25385229|pir||AI0599 probable ATP-dependent RNA helicase rhlE STY0855 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502034|emb|CAD05267.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Typhi] gi|29138117|gb|AAO69688.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 455 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118] gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118] Length = 462 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 165/373 (44%), Positives = 236/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PTPIQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|238913888|ref|ZP_04657725.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 455 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 460 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 165/373 (44%), Positives = 236/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PTPIQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|257093622|ref|YP_003167263.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046146|gb|ACV35334.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 491 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 167/376 (44%), Positives = 244/376 (64%), Gaps = 8/376 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL+P ++ A+ D GY +PTPIQ + IP+VL D+ G AQTGTGKTA+F LP+L Sbjct: 1 MRFDDLGLAPDLLRAIADQGYAEPTPIQAQAIPIVLAGQDLMGGAQTGTGKTAAFTLPLL 60 Query: 61 T-ILEKGRARV---RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 IL A + R P R L+L PTRELA QV ++ Y K L A + GG+ + Q Sbjct: 61 QRILPFASASLSPARHPVRVLMLAPTRELAIQVHESVRGYSKYVPLRSACVYGGVDIKPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++ G +VL+ TPGR+LD + L +++ LV+DEADRMLDMGFIP + I +L+P Sbjct: 121 IAEIRLGVEVLVATPGRLLDLIEQRCLNFGSVQALVLDEADRMLDMGFIPDVTRIINLLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ+LLFSAT ++E++K+++ L++P IEV ++ +ETI H A+ K ALL Sbjct: 181 QQRQSLLFSATFSEEIKKLADRMLKSPVLIEVARRNTVSETITHRVHPVAAE--AKRALL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +LL+S D ++F K L L++ G + +IHG+ Q+ R+K L FK+G+ Sbjct: 239 VKLLRSSD-FNQVLVFTRTKIETNKLARELQRAGIAADSIHGDKSQQERLKALEAFKDGS 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI ++ HV NF++P E+YIHRIGRTGRAG+ G A +LV+ ++ Sbjct: 298 VLVLVATDVAARGLDIDELPHVINFELPRTPEDYIHRIGRTGRAGKPGTAVSLVSASEVP 357 Query: 356 HIDAIEKLIEKKVDWL 371 ++ IEKLI +V+ + Sbjct: 358 YLVDIEKLIRIQVEQI 373 >gi|197247942|ref|YP_002145775.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211645|gb|ACH49042.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 453 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|16764183|ref|NP_459798.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992052|ref|ZP_02573150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16419327|gb|AAL19757.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329602|gb|EDZ16366.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246078|emb|CBG23880.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992563|gb|ACY87448.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157405|emb|CBW16894.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911844|dbj|BAJ35818.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226393|gb|EFX51444.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129127|gb|ADX16557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987751|gb|AEF06734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 454 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 234/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++V AV + GY PTPIQ + +P VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 ---TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + + + + +P R LIL PTRELAAQV ++ +YGK LT A + GG+ Q Sbjct: 61 QRLSAMPRQKINGHVPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+L+ TPGR+LDH +G + + +I+ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT DE++K++++ L NP IEV +ST E I KK +L Sbjct: 181 KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPV--DRDKKHPMLA 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+++ K ++F K L L + G + AIHGN Q +R K L+ FK+G + Sbjct: 239 HLIKTHQ-WKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++A+D+AARG+DI + HV N+D+PN E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 298 TALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDL 357 Query: 357 IDAIEKLIEKKV 368 + IE+ I++++ Sbjct: 358 LHDIERFIKREI 369 >gi|285019480|ref|YP_003377191.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73] gi|283474698|emb|CBA17197.1| probable atp-dependent rna helicase protein [Xanthomonas albilineans] Length = 456 Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 165/374 (44%), Positives = 232/374 (62%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PTPIQ + IP+ LQ HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTPIQSQAIPVALQGHDLMAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L V R PR LIL PTRELA QV D+ Y K + A + GG+ Q Sbjct: 61 QHLGTSAQTVGSGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L RG D+LI PGR+LDH R + ++ IEILV+DEADRMLDMGF+P I+ I + +P Sbjct: 121 DALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILTKLPK 180 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT + +++++ F+ NP+ I+ ++ A+TI H ++K LL Sbjct: 181 QNRQTLLFSATFEEGIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDG--ARKRELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL + D+ K ++F K L L+K G AIHGN Q R++ L +FK Sbjct: 239 LHLLAA-DSRKQTLVFARTKHGADKLTTFLDKSGIKAAAIHGNKSQGQRLRALGDFKASR 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 ITVLVATDIAARGIDIDQLPQVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEAK 357 Query: 356 HIDAIEKLIEKKVD 369 + AI +L+++ +D Sbjct: 358 LLRAIARLLKRDMD 371 >gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis EO147] Length = 395 Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 235/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPK 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAET+ +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|78186849|ref|YP_374892.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273] gi|78166751|gb|ABB23849.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273] Length = 418 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 170/406 (41%), Positives = 248/406 (61%), Gaps = 11/406 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L + ++ A+ + GY PTPIQ + IPL+L+ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MKFSSLHIIEPILRALEEEGYTHPTPIQTEAIPLILKGSDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + +A R R+LI+ PTRELA Q+ ++F YG++ LT ++ GG+ Q Sbjct: 61 QLLRERKAIDGKRKIRSLIVTPTRELAIQIGESFSAYGRHTGLTNTVIFGGVGQNPQVNA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD N+G L +++IEILV+DEADRMLDMGFI I+ I + VP R Sbjct: 121 LRRGVDILVATPGRLLDLMNQGILHLHDIEILVLDEADRMLDMGFIHDIRKILAAVPKER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+Q++S L++P ++ V SST + I + K LL L Sbjct: 181 QSLFFSATMPPEIQRLSSTILRHPAKVSVTPVSSTVDIINQQIY--FVDRGNKSGLLVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ D ++ ++F K + LEK + AIHGN Q +R + LSNFK ++ Sbjct: 239 LQNPD-IRTVLVFTRTKHGADKVVRHLEKHNITAEAIHGNKAQNARQRALSNFKSQKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ D+ V N+++ N AE Y+HRIGRTGRAG G A + E+ +++ Sbjct: 298 LVATDIAARGIDVDDLEWVINYEMSNIAETYVHRIGRTGRAGSAGTAISFCDAEEKEYLR 357 Query: 359 AIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQ 401 IEKLI K + ++ L NP KI I + R +P P+ Sbjct: 358 DIEKLIAKSIPVVDSHPFPLMDHNP--VKI-IKEQGRGRSGHPAPR 400 >gi|311109370|ref|YP_003982223.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans A8] gi|310764059|gb|ADP19508.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans A8] Length = 590 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 158/377 (41%), Positives = 231/377 (61%), Gaps = 18/377 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+P ++ AV +AG+ PTP+Q IP L HD+ +QTG+GKTA+F+LP L Sbjct: 1 MSFENLGLAPALLSAVQEAGFSTPTPVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60 Query: 61 TILEKGRARVRMP-------RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112 + +MP + L+L PTRELA QV D YG+ +L A ++GG+P+ Sbjct: 61 HRI------AQMPANKGVGVQVLVLTPTRELALQVTDATATYGRKLADLRTATVVGGMPY 114 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 AQ K L R DVL+ TPGR++DH N G++ +N + LV+DEADRMLDMGFI I+ I Sbjct: 115 GAQLKALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVG 174 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKK 231 +P RQTLLFSAT+ + K++ +++P+RIE+ I + YA S K Sbjct: 175 RLPEDRQTLLFSATLDGTIAKLAARMMRDPQRIEMAGAKEKHTNITQSLL--YADDASHK 232 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL +L+ + I+F + K+ +L L QGF+ A+HG+++QR R + LS Sbjct: 233 MQLLDHVLRDA-ALDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQL 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G ++++VA+D+AARG+D+ + H NFD+P +AE+Y+HRIGRTGRAGR G AFTL Sbjct: 292 QRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRSGLAFTLATH 351 Query: 352 EDIKHIDAIEKLIEKKV 368 + + IE I + + Sbjct: 352 SERHKVRRIEHYIGQSI 368 >gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans BC] gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans BC] Length = 564 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 157/373 (42%), Positives = 238/373 (63%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IP VL HD+ AQTGTGKTA+F LPML Sbjct: 1 MTFEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L +G+A R R L+L PTRELAAQV ++ YGK+ ++ ++ GG+ Q Sbjct: 61 HRLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRTYGKHLDIKSTVIFGGVGMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++++RG DVL+ TPGR+LD +G + ++ +EILV+DEADRMLDMGFI ++ + +L+P Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFIDLSQVEILVLDEADRMLDMGFIHDVKKVLALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE+++++ L +P+ I+V ++T + I V KK +L Sbjct: 181 KAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQ--VIHPVGRGKKKQVL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++Q D ++F K N+ L K G A+HGN Q +R + L FK G Sbjct: 239 LHIIQEHD-WSQVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQ 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI D+ HV N+++PN E+Y+HRIGRTGRAG+ G+A +LV ++ Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEG 357 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++++ Sbjct: 358 FMMEIERFTKQEI 370 >gi|154492527|ref|ZP_02032153.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC 43184] gi|154087752|gb|EDN86797.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC 43184] Length = 419 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 158/377 (41%), Positives = 240/377 (63%), Gaps = 5/377 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L + A+ Y PTPIQ + IP+VL D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPII 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E+ +R R P + LIL PTRELA Q+ ++F YG+ ++ ++ GG+ + Q Sbjct: 61 QKIEERISRGRKPGIKALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVGQKPQTDA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG DVLI TPGR+LD N+G + ++ +E V+DEADRMLDMGFI I+ I L+P R Sbjct: 121 LERGVDVLIATPGRLLDLINQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+++++ L P+++EV SST +TI+ + + +K LL+ L Sbjct: 181 QSLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQS--VYFVEKVEKINLLKNL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + ++++ ++F K + L K G AIHGN Q +R + LS+FK+ T+++ Sbjct: 239 LEDR-SLESVLVFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RG+D+ + HV N+D+PN E Y+HRIGRTGRAGR G AF+ E++ ++ Sbjct: 298 LIATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLK 357 Query: 359 AIEKLIEKKVDWLNGDL 375 I+KLI K+V G + Sbjct: 358 DIQKLIGKEVPVAGGHM 374 >gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2] gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2] Length = 448 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P+++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + + R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVLI TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPTK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638] gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638] Length = 462 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 159/371 (42%), Positives = 239/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P+++ AV + GY++PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDTLGLNPEILRAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + A+ R P R LIL PTRELAAQ+ +N +Y + ++ ++ GG+ Q Sbjct: 61 QRLVQNEPHAKGRRPVRALILTPTRELAAQIGENVREYSRYLDIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRSGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++E L+NP IEV ++ +E + + +K LL Q Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLRNPLEIEVARRNTASEQVSQYV--HFVDKKRKRELLSQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I+ Sbjct: 239 MI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357 Query: 358 DAIEKLIEKKV 368 IE+L++K++ Sbjct: 358 HDIERLLKKEI 368 >gi|300715940|ref|YP_003740743.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661] gi|299061776|emb|CAX58892.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661] Length = 480 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 162/375 (43%), Positives = 238/375 (63%), Gaps = 14/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVAEQGYDEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPVL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K +L ++ GG+ Sbjct: 61 QLLSSHNPHPKGR---RPVRALILTPTRELAAQIGENVQDYSKYLDLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G DVL+ TPGR+LD ++ L ++ +EILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRSGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233 P RQ LLFSAT +DE++ ++E L NP+ + V ++ +E I +H + K+ Sbjct: 178 PAKRQNLLFSATFSDEIKGLAEKLLHNPEEVSVARRNTASEQITQHVHMVD----KKRKR 233 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L L +D + ++F K +L L K G + AIHGN Q +R + LS+FKE Sbjct: 234 ELLSFLIGRDNWQQVLVFTRTKHGANHLAEQLNKDGITSAAIHGNKSQGARTRALSDFKE 293 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I+++VA+D+AARG+DI ++ HV NF++PN E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 294 GKIRVLVATDIAARGIDISELPHVVNFELPNVPEDYVHRIGRTGRAAATGEALSLVCVDE 353 Query: 354 IKHIDAIEKLIEKKV 368 +K + IE+++++++ Sbjct: 354 LKLLRDIERVLKREI 368 >gi|254237339|ref|ZP_04930662.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719] gi|126169270|gb|EAZ54781.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719] Length = 639 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 168/396 (42%), Positives = 241/396 (60%), Gaps = 12/396 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV AGY +PT +Q + IP VLQ D+ AQTGTGKT F LP+L Sbjct: 1 MSFSSLGLSEALARAVEAAGYSQPTRVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R R L+L PTRELAAQV D+F+ Y ++ L + GG+ Sbjct: 61 ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L +G DVL+ PGR+LD + K+ ++++EILV+DEADRMLDMGFI ++ + + Sbjct: 121 PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ LLFSAT + ++ ++ L NP+RIEV P++T E IE A +K A Sbjct: 181 LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + + ++F K L L K G AIHGN Q +R K L++FK Sbjct: 239 LLAHLV-TVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKA 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRAGR G+A +LVA ++ Sbjct: 298 NDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389 K + AIEK+ +++ +GD +P ++AQ Sbjct: 358 EKLLKAIEKMTRQRIP--DGDAQGFDPEAVLPEVAQ 391 >gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 460 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 165/373 (44%), Positives = 236/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PTPIQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPVQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter cloacae SCF1] gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1] Length = 446 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 241/372 (64%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P+++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR--ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + A+ R P R LIL PTRELAAQV +N +Y K N+ ++ GG+ Q Sbjct: 61 QRLVQNEPHAKGRRPIRALILTPTRELAAQVGENVREYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ L ++++E+LV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNALKLDSVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IE+L++K++ Sbjct: 357 LRDIERLLKKEI 368 >gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220] gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220] Length = 447 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + + R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLVTHQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVLI TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKSLAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus denitrificans K601] gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans K601] Length = 568 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 157/373 (42%), Positives = 238/373 (63%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IP VL HD+ AQTGTGKTA+F LPML Sbjct: 1 MTFEELKLAPALLQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L +G+A R R L+L PTRELAAQV ++ YGK+ ++ ++ GG+ Q Sbjct: 61 HRLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRAYGKHLDIKSTVIFGGVGMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++++RG DVL+ TPGR+LD +G + ++ +EILV+DEADRMLDMGFI ++ + +L+P Sbjct: 121 IERIKRGVDVLVATPGRLLDLQQQGFMDLSQVEILVLDEADRMLDMGFIHDVKKVLALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE+++++ L +P+ I+V ++T + I V KK +L Sbjct: 181 KAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQ--VIHPVGRGKKKQVL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++Q D ++F K N+ L K G A+HGN Q +R + L FK G Sbjct: 239 LHIIQQHD-WSQVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQ 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI D+ HV N+++PN E+Y+HRIGRTGRAG+ G+A +LV ++ Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEG 357 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++++ Sbjct: 358 FMMEIERFTKQEI 370 >gi|62179387|ref|YP_215804.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127020|gb|AAX64723.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713858|gb|EFZ05429.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 453 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/371 (43%), Positives = 237/371 (63%), Gaps = 8/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKK 367 + IEKL++K+ Sbjct: 357 LRDIEKLLKKE 367 >gi|323268735|gb|EGA52195.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 404 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 453 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQLHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|209695626|ref|YP_002263555.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238] gi|208009578|emb|CAQ79874.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238] Length = 398 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 157/364 (43%), Positives = 231/364 (63%), Gaps = 5/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ + GY PTPIQ K IP+ L ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSNLGLSNPILKAINELGYKAPTPIQEKAIPVALTGKNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L E+ + R + R LIL PTRELA QV DN KY K+ +LT + GG+ ++ Q ++ Sbjct: 61 QMLSEEQTKVRAKRIRALILTPTRELAVQVEDNISKYSKHLDLTSLAMYGGVDYKEQKQR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+L+ TPGR+LD + + + + I+ILV+DEADRMLDMGFI I I +P R Sbjct: 121 LIEGVDILVATPGRLLDMYTQRAVHFDEIDILVLDEADRMLDMGFIEDINKIIERLPLER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT++++++ ++ + NP I + S+ I+ + KK AL+ L Sbjct: 181 QNLLFSATLSEQVRALARTAINNPIEITIERNSNAEPKIDQWLITV--DKDKKSALISHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ D +IF K L LEK+G + A H Q +R K+L++FKEG ++ Sbjct: 239 IKEND-WDQALIFIETKHGAAKLVGQLEKRGITAEAFHSGRSQDARSKVLNDFKEGRLKY 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+ +AARG+DI ++ V N+D+P AE+Y+HRIGRTGRAG G+A + V+++D K++ Sbjct: 298 LVATGIAARGIDIDELTRVINYDLPFPAEDYVHRIGRTGRAGSSGEAISFVSRDDFKNLC 357 Query: 359 AIEK 362 IEK Sbjct: 358 MIEK 361 >gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix] gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix] Length = 441 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 162/375 (43%), Positives = 231/375 (61%), Gaps = 6/375 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ AGY PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 7 FADLGLAESLLRALDQAGYKTPTPIQAQAIPEVLKGGDLLAAAQTGTGKTAGFTLPILQR 66 Query: 63 LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G+ R PR LIL PTRELAAQV D+ YG++ +L + GG+ Q K L Sbjct: 67 LTTGQTPERKPGRPRALILTPTRELAAQVHDSVRTYGRHLSLKSMTIFGGVNMNPQIKAL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ + L+P RQ Sbjct: 127 RGPMDIVVATPGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRRLIGLMPKQRQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT + E++ ++ + L P ++V ++ AET++ + S+K LL L+ Sbjct: 187 NLMFSATFSGEIRTLASSLLNKPAEVDVAPRNTAAETVQQTV--HLVESSRKRELLSHLI 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +S D ++F K L L + G AIHGN Q +R K L FK G + ++ Sbjct: 245 RSND-WGQVLVFTRTKHGANRLAQKLTQDGVPSEAIHGNKSQAARTKALKQFKTGAVPVL 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV E++K + Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSVGAALSLVDGEEMKLLKG 363 Query: 360 IEKLIEKKVDWLNGD 374 IE+LI++ ++ + D Sbjct: 364 IERLIQRPIERIETD 378 >gi|167568882|ref|ZP_02361756.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786] Length = 408 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 235/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPK 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAET+ +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|187925284|ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN] gi|187716478|gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans PsJN] Length = 515 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 166/373 (44%), Positives = 231/373 (61%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L A R R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 QRLNTMPAVTTGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L G D+++ TPGR+LDH + + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT +DE++ +++N L +P IEV ++TAET+ KK LL Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPV--DRDKKRELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ + + ++F K L L K S AIHGN Q +R + L+ FK+GT Sbjct: 239 THLIKQHNWFQV-LVFTRTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFKDGT 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+DI + HV N+D+PN E+Y+HRIGRTGRAG G+A +LV ++++ Sbjct: 298 LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQ 357 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ V Sbjct: 358 LLKDIEKLIKRPV 370 >gi|294338780|emb|CAZ87114.1| ATP-dependent RNA helicase [Thiomonas sp. 3As] Length = 533 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 240/374 (64%), Gaps = 10/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL +V AV + GY PTPIQ++ IP+VL HD+ AQTGTGKTA F LPML Sbjct: 1 MSFQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPML 60 Query: 61 TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L G + ++ +PR LIL PTRELAAQV +N YG++ L + GG+ + Sbjct: 61 QRLSGGEPARNAKGKI-IPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQP 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L RG D+++ TPGR+LDH ++ + ++ +++LV+DEADRMLDMGF+ ++ I +L+ Sbjct: 120 QINALARGMDIVVATPGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALL 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT ++E+++++ +FL NP+++ V ++TA+ +E +K + Sbjct: 180 PKQRQNLLFSATFSEEIKRLAGDFLVNPQQVAVARQNATADLVEQIVFPV--DRERKRDM 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ ++ + ++F K L L+K G HGN Q +R++ L++FK G Sbjct: 238 LVHLIRERNWPQT-LVFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +Q++VA+D+AARG+DI + V N+++PN E+Y+HRIGRTGRAG +G+A +LV +++ Sbjct: 297 KLQVLVATDIAARGIDIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDEL 356 Query: 355 KHIDAIEKLIEKKV 368 + IEKL+ + Sbjct: 357 GFLRDIEKLVRNPI 370 >gi|213620634|ref|ZP_03373417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 402 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|319783363|ref|YP_004142839.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 474 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 161/387 (41%), Positives = 245/387 (63%), Gaps = 8/387 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA LG++ ++ A +AG+ +P PIQ + IP ++ D+ GIAQTG+GKTA+F LP+L+ Sbjct: 18 FAALGITGALLKATHNAGFTEPKPIQAQAIPPQMEGRDIFGIAQTGSGKTAAFALPILSK 77 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ D + K +++ AL++GG+ +Q KK+ Sbjct: 78 IIALGTKRRPKTARALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVA 137 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+ D G L++ + + LV+DE DRMLDMGFI ++ I RQT Sbjct: 138 PGVDILIATPGRLTDLVREGDLMLADTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQT 197 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +E+ ++++ L+NP R+EV S+ A I V +A+ +K +L +L Sbjct: 198 VLFSATMPNEIAELAKGLLKNPIRVEVAPQSTAAAEIVQGVV--FARTKQKRQVLSTML- 254 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +TMK+ IIF K + LE+ GF IHGN Q +R K L++F++G+++++V Sbjct: 255 ADETMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILV 314 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G G A TL + + + Sbjct: 315 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQV 374 Query: 361 EKLIEKKVDWLNGDLSSLNP---PLEK 384 E++I K+ + L S +P P EK Sbjct: 375 ERIIRTKLPIVADHLGSPDPLRNPAEK 401 >gi|299530317|ref|ZP_07043742.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44] gi|298721688|gb|EFI62620.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44] Length = 613 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 157/373 (42%), Positives = 242/373 (64%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IPLVL HD+ AQTGTGKTA+F LPML Sbjct: 1 MTFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L G A + RTL+L PTRELAAQV +N Y K ++T ++ GG+ + Q Sbjct: 61 QRLASGAAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++E+G DVL+ TPGR+LD +G + ++ +E+L++DEADRMLDMGFI ++ + +LVP Sbjct: 121 IARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE+++++ L+NP+ I+V ++T + I+ + + KK LL Sbjct: 181 KDKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQV-IHPVGRGKKKQVLL 239 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++Q ++ ++F K N+ L K G S A+HGN Q +R + L FK G Sbjct: 240 -HIIQ-ENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGE 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VA+D+AARG+DI ++ +V N+++PN +E+Y+HRIGRTGRAGR G A +LV ++ Sbjct: 298 LRALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEG 357 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++++ Sbjct: 358 FMMDIERFTKQEI 370 >gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 486 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 181/443 (40%), Positives = 259/443 (58%), Gaps = 17/443 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ + AV GY PTPIQ ++IP +L+ D+ GIAQTGTGKTA+F LP+L Sbjct: 1 MKFEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPIL 60 Query: 61 T-ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ G+ R + R LIL PTRELA QV D F +Y + ++ A + GG+ Q +K Sbjct: 61 QRLLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG DVL+ TPGR+LD + + + +E V+DEADRMLDMGFI I+ + +++P R Sbjct: 121 LIRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDR 180 Query: 179 QTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 Q L FSATM +E+ K++ L+ NP R+EV S+ E I + +K ALL++ Sbjct: 181 QNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKR--RKGALLKE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL MK ++FC K + LEK G AIHGN Q R + L NFK I+ Sbjct: 239 LLAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIR 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ DV HVFN+D+PN E ++HRIGRT RAG+ G A + + ++ + Sbjct: 299 VLVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDL 358 Query: 358 DAIEKLIEKKVDWLNGDLS---SLNPPLEKI--DIAQHNHARKNNPIPQKSTGFDR---- 408 IEKL K+ GD S +L PP ++ + +++ R + Q R Sbjct: 359 RGIEKLTRVKIP--EGDQSIYENLPPPQKETAESMMRNSRGRMSREEAQARAAETRNNRG 416 Query: 409 -RKKNYSSQKSHIPLKESEKISK 430 RK N+ Q S+ SE+IS+ Sbjct: 417 NRKGNHGKQNSNNAPHNSEQISR 439 >gi|224582633|ref|YP_002636431.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467160|gb|ACN44990.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 488 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|264677685|ref|YP_003277591.1| hypothetical protein CtCNB1_1549 [Comamonas testosteroni CNB-2] gi|262208197|gb|ACY32295.1| hypothetical conserved protein [Comamonas testosteroni CNB-2] Length = 616 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 157/373 (42%), Positives = 242/373 (64%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IPLVL HD+ AQTGTGKTA+F LPML Sbjct: 4 MTFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPML 63 Query: 61 TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L G A + RTL+L PTRELAAQV +N Y K ++T ++ GG+ + Q Sbjct: 64 QRLASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQ 123 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++E+G DVL+ TPGR+LD +G + ++ +E+L++DEADRMLDMGFI ++ + +LVP Sbjct: 124 IARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVP 183 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE+++++ L+NP+ I+V ++T + I+ + + KK LL Sbjct: 184 KDKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQV-IHPVGRGKKKQVLL 242 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++Q ++ ++F K N+ L K G S A+HGN Q +R + L FK G Sbjct: 243 -HIIQ-ENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGE 300 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VA+D+AARG+DI ++ +V N+++PN +E+Y+HRIGRTGRAGR G A +LV ++ Sbjct: 301 LRALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEG 360 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++++ Sbjct: 361 FMMDIERFTKQEI 373 >gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571] gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571] Length = 540 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 161/435 (37%), Positives = 256/435 (58%), Gaps = 11/435 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL+ +V A+ + +V PTPIQ + IP +L D+ GIAQTGTGKTA+F LP+L Sbjct: 4 FSELGLAEPIVRALTEEKHVTPTPIQAQAIPAILSGKDLIGIAQTGTGKTAAFGLPILDH 63 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R+ R R LIL PTREL+ Q+ DN +K+G++ L+ L IGG+P Q + L+ Sbjct: 64 LSRNPRRIEPRSCRVLILSPTRELSGQILDNLDKFGRHIRLSTTLAIGGVPMGRQIRALQ 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVL+ TPGR++D L ++ +E+ V+DEAD+MLDMGF+ I+ I +P R + Sbjct: 124 RGVDVLVATPGRLMDLVENNALKLDTVEVFVLDEADQMLDMGFVHAIKAIVRRLPHKRHS 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM + ++ + L+NP + V + TA+ ++ + + + K +L ++L Sbjct: 184 LFFSATMPSAIADLAASMLRNPVTVAVTPVAKTADRVDQRVI--FVEKPAKAKMLAEVLS 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + ++F K + L + G AIHGN Q R ++L+ F+EG+++ +V Sbjct: 242 TEE-VDRALVFTRTKHGADKVVQVLARAGHKAEAIHGNKSQNQRDRVLAAFREGSLRTLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+D+PN E+Y+HRIGRT RAGR G A + E+ ++ +I Sbjct: 301 ATDIAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERAYLRSI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN-NPIPQKSTGFDRRKKNYSSQKSH 419 EKLI ++ D P E D + R N P ++ +RR+ +++ Sbjct: 361 EKLI--RMTLPTTDRRGEARPAEAADAVGEDRPRANAQPRGERQ---ERREPRGERKEAR 415 Query: 420 IPLKESEKISKLQQD 434 P E + ++Q D Sbjct: 416 PPRAERPQGERVQGD 430 >gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599] gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599] Length = 489 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 158/369 (42%), Positives = 231/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL+ ++ A+ D GY PTPIQ K IP+VL D+ AQTGTGKTA F LP+L Sbjct: 15 FSGLGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQR 74 Query: 63 LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R PR LIL PTREL AQV ++ + Y K + L+ GG+ Q + L Sbjct: 75 LLDNPMQTRKPGRPRCLILTPTRELTAQVEESVKAYAKYTRIRSVLIFGGVSINPQIQAL 134 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+LDH +G + ++ +EI V+DEADRMLDMGFI I+ + + +P RQ Sbjct: 135 RQPVDILVATPGRLLDHVQQGTVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKLPAKRQ 194 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++ ++ L NP ++V ++ +E + A ++K ALL L+ Sbjct: 195 NLLFSATFSPEIRSLAHGLLDNPAEVDVAPRNTASELVAQS--AHLVPKTRKRALLSYLI 252 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ K ++F K L L K G AIHGN Q +R + LS FK+G++ ++ Sbjct: 253 GSR-RWKQVLVFTKTKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSLPVL 311 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRAG G A +LV +E++K + Sbjct: 312 VATDIAARGLDIDELPHVVNYELPNVPEDYVHRIGRTGRAGHEGTAVSLVDREEMKLLTG 371 Query: 360 IEKLIEKKV 368 IE+LI++++ Sbjct: 372 IERLIKRQI 380 >gi|91775611|ref|YP_545367.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91709598|gb|ABE49526.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] Length = 456 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 155/372 (41%), Positives = 233/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L P ++ A+ +AGY PTPIQ + IP VL+ HD+ AQTGTGKTA+F LP L Sbjct: 1 MSFENLNLHPAILRALTEAGYSTPTPIQAQAIPEVLEGHDLMASAQTGTGKTAAFTLPAL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L A+ R PR L+L PTRELAAQV + KYGK ++GG+P+ QNK L Sbjct: 61 NLLATPHPAKSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+LDH RG++ M+ +++L++DEADRMLDMGF+P I+ I+S +P RQ Sbjct: 121 SQPIDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERISSALPSERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237 TL+FSAT ++ +++ L+ PK I++ IE FV A +K LL+ Sbjct: 181 TLMFSATFEGQIANIAKTLLKTPKVIQIAAQKEKHANIEQKLLFVDDMAHKNK---LLEH 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + + I+F + K++ L L G A+HG++ Q +R + L+ + G ++ Sbjct: 238 LLIAPG-VNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ + HV N+D+P AE+Y+HRIGRTGRAG G A + + D + Sbjct: 297 VLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVALSFASHMDRHQL 356 Query: 358 DAIEKLIEKKVD 369 IE+ ++++ Sbjct: 357 RKIEQYTGQRLE 368 >gi|296134828|ref|YP_003642070.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] gi|295794950|gb|ADG29740.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] Length = 533 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 240/374 (64%), Gaps = 10/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL +V AV + GY PTPIQ++ IP+VL HD+ AQTGTGKTA F LPML Sbjct: 1 MSFQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPML 60 Query: 61 TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L G + ++ +PR LIL PTRELAAQV +N YG++ L + GG+ + Sbjct: 61 QRLSGGEPARNAKGKI-IPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQP 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L RG D+++ TPGR+LDH ++ + ++ +++LV+DEADRMLDMGF+ ++ I +L+ Sbjct: 120 QINALARGMDIVVATPGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALL 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT ++E+++++ +FL NP+++ V ++TA+ +E +K + Sbjct: 180 PKQRQNLLFSATFSEEIKRLAGDFLVNPQQVAVARQNATADLVEQIVFPV--DRERKRDM 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ ++ + ++F K L L+K G HGN Q +R++ L++FK G Sbjct: 238 LVHLIRERNWPQT-LVFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +Q++VA+D+AARG+DI + V N+++PN E+Y+HRIGRTGRAG +G+A +LV +++ Sbjct: 297 KLQVLVATDIAARGIDIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDEL 356 Query: 355 KHIDAIEKLIEKKV 368 + IEKL+ + Sbjct: 357 GFLRDIEKLVRNPI 370 >gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM 3776] gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM 3776] Length = 608 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 238/371 (64%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL +SP ++ AV +GYV PTPIQ +TIPL+++ DV G+AQTGTGKTA+F +PML Sbjct: 14 FADLNISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGTGKTAAFAIPMLQA 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + ++ LIL PTRELA QVA+ FEKY N L VA + GG ++ Q ++L R Sbjct: 74 IDLSSSATQV---LILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQDYQLQFRQLNR 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L +++++ LV+DEAD ML MGF ++ I P RQ Sbjct: 131 GAHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWILEQTPSQRQIA 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D ++++++ L+NP I + ++TAETI F+ T + K+ A+L ++L++ Sbjct: 191 LFSATMPDSIRRIAQKHLKNPAEITIKRRTATAETIRQRFI-TVPPFQKE-AVLARILET 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K V L L QG+ A+ ++ Q R +I+ + K G + +++A Sbjct: 249 -EPIDAVIIFVKTKSTTVPLAEFLASQGYRTAALSSDVPQAQRERIVEHLKSGRLDIVIA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV NFD+P+ +E+Y+HRIGRTGRAGR G + + + IE Sbjct: 308 TDVAARGLDVQRITHVINFDLPSDSESYVHRIGRTGRAGRQGDTILFLHPRERFQLRRIE 367 Query: 362 KLIEKKVDWLN 372 ++ + ++ + Sbjct: 368 QVTRQPIEPMQ 378 >gi|167041353|gb|ABZ06107.1| putative DEAD/DEAH box helicase [uncultured marine microorganism HF4000_005I08] Length = 416 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 164/368 (44%), Positives = 229/368 (62%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L+ ++ A+ D GY PTPIQ K+IP +L+ D+ G+AQTGTGKTA+F LP+L Sbjct: 4 FAGLDLAQPILRAIADEGYTTPTPIQGKSIPPLLEGRDLLGVAQTGTGKTAAFALPLLHR 63 Query: 63 LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L G++ R P LIL PTRELA Q+ D+F YG++ L ++ GG+ Q + L Sbjct: 64 LADNAGKSHPRQPLALILAPTRELAGQIGDSFRTYGRHLRLRTGVVFGGVSIRRQIQTLA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG VL+ TPGR++D NRG L ++ +E+ ++DEADRMLDMGFI ++ IT+ +P RQT Sbjct: 124 RGVHVLVATPGRLIDLMNRGDLRLDAVEVFILDEADRMLDMGFIRDVKKITAALPKRRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +Q ++ + L NP R+E S+T E ++ + + KK ALL +LL Sbjct: 184 LLFSATMPKSVQGLAADLLSNPVRVEAAPASTTVEKVDQMVL--FVPKDKKRALLGELLN 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D M +IF K + L +G AIHGN Q +R + L F+ G I+ +V Sbjct: 242 DKD-MARVLIFTRTKHGANRVARYLHDRGIHSDAIHGNKAQNARQRALDGFRSGRIRALV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV NFD+PN E+Y+HRIGRT RAG G A + + H+ I Sbjct: 301 ATDIAARGIDVEGVTHVINFDLPNDPESYVHRIGRTARAGAAGIAISFCDSGERAHLRDI 360 Query: 361 EKLIEKKV 368 EK I +KV Sbjct: 361 EKTIRQKV 368 >gi|83719171|ref|YP_441164.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] gi|257140174|ref|ZP_05588436.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] gi|83652996|gb|ABC37059.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] Length = 482 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 235/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863] gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v] Length = 454 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|87302363|ref|ZP_01085188.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701] gi|87283288|gb|EAQ75244.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701] Length = 427 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 161/358 (44%), Positives = 229/358 (63%), Gaps = 4/358 (1%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG- 66 +S ++ A+ GY P+PIQ++ IP VL DV AQTGTGKTA F LPML L G Sbjct: 1 MSEPLLKAIALKGYTCPSPIQVQAIPAVLSGRDVMAAAQTGTGKTAGFTLPMLERLRHGP 60 Query: 67 RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 AR R+L+L PTRELAAQVA++ + YG+ +L ++ GG+ Q ++L RGADVL Sbjct: 61 HARNNQVRSLVLTPTRELAAQVAESVQAYGRFLDLRGDVVFGGVKVNPQMQRLRRGADVL 120 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 + TPGR++D + + + + +EILV+DEADRMLDMGFI IQ I +L+P RQ LLFSAT Sbjct: 121 VATPGRLMDLYQQNAIRFDRLEILVLDEADRMLDMGFIRDIQKILALLPPKRQNLLFSAT 180 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246 ++K++ L P +++ + A +E V ++K LL L++S D + Sbjct: 181 FNPSIRKLAHGLLHQPLQLQATPENRAAPLVEQ--VMHPCDMARKGDLLSHLIRSND-WQ 237 Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306 ++F K L L ++G + AIHGN Q +R + L++FK G ++++VA+DLAA Sbjct: 238 QVLVFSRTKHGANRLAERLSQEGVAAMAIHGNKSQGARTRALASFKSGELRVLVATDLAA 297 Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RGLDI + HV N D+PN AE+Y+HRIGRTGRAG+ G A +LVA E+ + + AIEK+I Sbjct: 298 RGLDIEQLPHVVNLDLPNVAEDYVHRIGRTGRAGQSGHALSLVAAEEHELLRAIEKVI 355 >gi|189499873|ref|YP_001959343.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495314|gb|ACE03862.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides BS1] Length = 418 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 232/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ + L ++ A+ + GY PTPIQ + IP++L+ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MGFSSIDLIDPILQALREEGYSSPTPIQAQAIPMILEGRDLLGCAQTGTGKTAAFAIPLL 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L K + + R L++ PTRELA Q+ D+F YG++ LT ++ GG+ Q Sbjct: 61 QLLHARKTNEKKKKIRALVVTPTRELAMQIGDSFSAYGRHTGLTNQVIFGGVNQNPQTAS 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+++ TPGR+LD N+G L + ++EILV+DEADRMLDMGFI I+ I + +P + Sbjct: 121 LRKGVDIVVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPQKK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+ +++ L+NP ++ V SST +TI + K LL L Sbjct: 181 QSLFFSATMPTEIVRLAGTILKNPAKVSVTPVSSTVDTIRQAVY--FVDKGNKNRLLVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++ +K ++F K + L+K AIHGN Q +R + L NFKE T ++ Sbjct: 239 LKGEE-IKTALVFTRTKHGADKVVKFLQKHAVRAEAIHGNKGQGARQRALKNFKEQTTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ D+ HV NFD+ N AE Y+HRIGRTGRAG G A + + +++ Sbjct: 298 LVATDIAARGIDVDDLEHVINFDMSNVAETYVHRIGRTGRAGAKGTALSFCDAGEKEYLR 357 Query: 359 AIEKLIEKKV 368 +EKLI KK+ Sbjct: 358 DVEKLIAKKI 367 >gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252] Length = 453 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P RTLIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRTLILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|160874449|ref|YP_001553765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|160859971|gb|ABX48505.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|315266685|gb|ADT93538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 411 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 177/410 (43%), Positives = 247/410 (60%), Gaps = 20/410 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+ K+V + GY PTPIQ++ IP +L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSVLSLNSKLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60 Query: 61 ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + L++ A VR R L+L PTRELA QV +F KY K ++ V + GG+ +A Sbjct: 61 HHLLALSPLQELTA-VRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDA 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q G DVLI TPGR+LDH +G L + + +LV DEADRMLDMGF+ IQ + V Sbjct: 120 QVAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQV 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQTLLFSAT+ + +S+ L++PK IEV ++TA IE A A +K L Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDA--DRKTEL 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L++S++ +IF K+ V L L K A HG++ Q +R K+L FK+G Sbjct: 238 VSHLVRSKN-WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 IQ++VA+D+AARGLDI ++ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED Sbjct: 297 KIQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDA 356 Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 ++ +E +++K++ WL G P K+D R+N QK Sbjct: 357 LLLEEVEVVLDKRLPQQWLPG----FEPDFNKMD----TEPRRNGKAAQK 398 >gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix cholodnii SP-6] gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6] Length = 479 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 163/373 (43%), Positives = 235/373 (63%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL+ ++ AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFDDLGLAQPILRAVHEEGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG---RARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L G + R P R LIL PTRELAAQV ++ YGK LT ++ GG+ Q Sbjct: 61 HKLAAGEPVKNRNGRPAIRALILTPTRELAAQVEESVRTYGKYLQLTSMVIFGGVGMGPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L +G D+L+ TPGR+LDH +G + ++ ++ V+DEADRMLDMGF+ I+ + +++P Sbjct: 121 VDRLRKGVDILVATPGRLLDHHQQGTIDLSQVQFFVLDEADRMLDMGFVHDIKKVLAIIP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE++ +++ L P+ IEV ++TAETI + + K LL Sbjct: 181 AKKQSLLFSATFSDEIKALADRLLNKPQVIEVARRNTTAETIAQRVIKVGRENKKD--LL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++SQ+ + ++F K LC L K S AIHGN Q +R K L+ FK G Sbjct: 239 AHLIKSQNWHQV-LVFTRMKHGANRLCEFLNKNDISAMAIHGNKSQGARTKALAEFKTGD 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARG+DI + HV N+++PN E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 298 LTVLVATDIAARGIDIDMLPHVINYELPNVPEDYVHRIGRTGRAGAQGEALSLVCVDEEG 357 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++ + Sbjct: 358 FLADIEKLIKRSI 370 >gi|221068202|ref|ZP_03544307.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1] gi|220713225|gb|EED68593.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1] Length = 613 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 157/373 (42%), Positives = 242/373 (64%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IPLVL HD+ AQTGTGKTA+F LPML Sbjct: 1 MTFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L G A + RTL+L PTRELAAQV +N Y K ++T ++ GG+ + Q Sbjct: 61 QRLASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++E+G DVL+ TPGR+LD +G + ++ +E+L++DEADRMLDMGFI ++ + +LVP Sbjct: 121 IARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE+++++ L+NP+ I+V ++T + I+ + + KK LL Sbjct: 181 KDKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQV-IHPVGRGKKKQVLL 239 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++Q ++ ++F K N+ L K G S A+HGN Q +R + L FK G Sbjct: 240 -HIIQ-ENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGE 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VA+D+AARG+DI ++ +V N+++PN +E+Y+HRIGRTGRAGR G A +LV ++ Sbjct: 298 LRALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEG 357 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++++ Sbjct: 358 FMMDIERFTKQEI 370 >gi|120599060|ref|YP_963634.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|146292869|ref|YP_001183293.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|120559153|gb|ABM25080.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145564559|gb|ABP75494.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 467 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 226/363 (62%), Gaps = 4/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V A+ + GY PTPIQ K IP++L +V G AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + R + R +IL PTRELA QV +N +Y K LT + GG+ Q KKL Sbjct: 61 QMFADAPKIRPKRVRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKKKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + + +LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKLPPQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ +++ ++NP IE+ ++TA I+ T KK ALL L+ Sbjct: 181 NLLFSATLSKQVRVLAKTAVENPIEIEIARNAATAPQIDQWL--TTVDKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q +IF K+ L LEK+ A H Q R ++L++FK G + + Sbjct: 239 KEQ-AWDQALIFIQTKQGAAKLVSQLEKRDIGAEAFHSGRSQAVREQLLADFKSGKLAFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI + V N+D+P+ A++YIHRIGRTGRAG HG+A + V+K+D K++ A Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGEHGEAISFVSKDDFKNLCA 357 Query: 360 IEK 362 IE+ Sbjct: 358 IER 360 >gi|307293134|ref|ZP_07572980.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] gi|306881200|gb|EFN12416.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] Length = 460 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 159/377 (42%), Positives = 230/377 (61%), Gaps = 13/377 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL+ ++ A+ Y PTPIQ + IP++L+ D+CGIAQTGTGKTA+F LP L Sbjct: 1 MQFTDLGLAEPILRALAAKKYGSPTPIQAQAIPMLLKGKDLCGIAQTGTGKTAAFALPSL 60 Query: 61 TILEKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 AR P R L+L PTRELAAQ+A +F YG+ L+V ++ GG+P Sbjct: 61 DHF----ARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINR 116 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L RG D+++ TPGR+LD ++ + + EI V+DEAD+M+DMGFI ++ I L+ Sbjct: 117 QIRTLGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLL 176 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ L FSATM E++ ++ FL +P ++ V S+TAE + AT+ +K AL Sbjct: 177 PKERQNLFFSATMPGEIEALAAQFLHDPVKVSVAPQSTTAERVRQQ--ATFVNQMEKQAL 234 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++++D + +IF K + LE G AIHGN Q R L F+ G Sbjct: 235 LNLTIRNED-IDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHG 293 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++L+VA+D+AARG+D+ V HV NF++PN E Y+HRIGRT RAG G A + VA ++ Sbjct: 294 HVKLLVATDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGIAISFVADDER 353 Query: 355 KHIDAIEKLIEKKVDWL 371 ++ AIE+ + K+D + Sbjct: 354 PYLKAIERTTKVKLDVV 370 >gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ] gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ] Length = 439 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 156/370 (42%), Positives = 231/370 (62%), Gaps = 8/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F PKVV + GY PTPIQ + IP ++ HD+ G+AQTGTGKTA+F LP+L Sbjct: 1 MPFQQFSFHPKVVAGINALGYTTPTPIQAQAIPKIMAGHDLMGLAQTGTGKTAAFALPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R +VR L++ PTRELA Q+ D + G+ L + GG+ Q +KL Sbjct: 61 HRLMQGPRKQVR---ALVIAPTRELAEQINDAMLELGQQTRLKSITVYGGVNVNPQIEKL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++++ PGR+LDH N+G + + N+E+LV+DEAD+M DMGF+P I+ I +P RQ Sbjct: 118 KNGVEIVVACPGRLLDHINQGTIDLTNLELLVLDEADQMFDMGFLPDIRRILKHLPAQRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM E++ ++ L++P ++V+ + A T+ H AQ+ K LL QLL Sbjct: 178 TMLFSATMPAEIRGLAREILRDPATVQVDN-VAPAATVSHALYPV-AQH-LKTPLLMQLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + DT + +IF K + LEK G++ ++ GN+ Q R + F+ GT Q++ Sbjct: 235 KHTDT-DSVLIFTRTKHRAKRVGEQLEKAGYTAASLQGNLSQNRRQAAMDGFRNGTYQIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV N+D+P+ +E YIHRIGRTGRA R+G AFT+V ED + A Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTSEAYIHRIGRTGRAARNGDAFTMVTDEDTLMVKA 353 Query: 360 IEKLIEKKVD 369 IE+ + ++ Sbjct: 354 IERTLGAAIE 363 >gi|167617991|ref|ZP_02386622.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4] Length = 435 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 235/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|304395765|ref|ZP_07377648.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] gi|304357059|gb|EFM21423.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] Length = 457 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 163/374 (43%), Positives = 234/374 (62%), Gaps = 6/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA--RVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L R R P R LIL PTRELAAQV +N Y K +L ++ GG+ Q Sbjct: 61 QKLSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMV 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD + + ++ +E+LV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILVATPGRLLDLAQQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLARLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++E L NP+ IEV ++ +E + + +K LL Q Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTASEQVAQQV--AFVDKKRKRELLSQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + + ++F K +L L K G S AIHGN Q +R + L++FK G I+ Sbjct: 239 LI-GEGNWQQVLVFTRTKHGANHLAEQLGKDGISAAAIHGNKSQGARTRALADFKSGGIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA G A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357 Query: 358 DAIEKLIEKKVDWL 371 IE+L+++++ L Sbjct: 358 RDIERLLKREIPRL 371 >gi|294637108|ref|ZP_06715421.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685] gi|291089702|gb|EFE22263.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685] Length = 452 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 173/424 (40%), Positives = 257/424 (60%), Gaps = 11/424 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL +++ AV + GY PTPIQ + IPLVLQR D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L + G+ R R R LIL PTRELAAQ+ DN +Y ++ L ++ GG+ Q Sbjct: 61 QLLHQNPKNGKGR-RPVRALILTPTRELAAQIGDNVREYSRHLPLRSLVVFGGVSINPQM 119 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 120 MKLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPA 179 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 RQ LLFSAT +DE++ ++ + L NP +EV ++ +E + +H + +K LL Sbjct: 180 KRQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELVSQHVHL---VDKKRKRELL 236 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ SQD + ++F K +L L K G S AIHGN Q +R + L++FK G Sbjct: 237 SFLIGSQD-WRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGD 295 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+AARGLDI + +V N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 296 IRVLVATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHK 355 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST-GFDRRKKNYS 414 + IE+L+++ + + +P ++ I + N ++ T G RR Sbjct: 356 LLRDIERLLKRPIPRMAIAGYEPDPSIKAEPIQNGRQGGRQNGRNERGTQGQGRRGTGTR 415 Query: 415 SQKS 418 S++S Sbjct: 416 SKES 419 >gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952] gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952] Length = 522 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 160/384 (41%), Positives = 241/384 (62%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LSP+++ AV +G+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELELSPELLKAVERSGFEEATPIQSETIPLALSGRDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + ++ L++ PTRELA Q + + GK+ + V + GG Q ++L+ Sbjct: 61 EKIDTSSSHLQ---GLVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIRQLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + +E LV+DEAD ML+MGF+ I++I S VP TRQT Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIESIISKVPSTRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F+QNP+ +++ TA+ I+ +V ++ +K ++ +LL Sbjct: 178 LLFSATMPPAIKSIGVKFMQNPEHVKIKAKEMTADLIDQYYVR--SKDFEKFDIMTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + IIF K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHTI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ ++ L PP EK Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371 >gi|320527000|ref|ZP_08028189.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei F0204] gi|320132585|gb|EFW25126.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei F0204] Length = 459 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 159/377 (42%), Positives = 235/377 (62%), Gaps = 7/377 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F DL L ++ AV A Y P+PIQ K IP++L+ D+ AQTGTGKTA+F LP+L Sbjct: 1 MNFTDLELKEPILSAVNKAKYETPSPIQEKAIPVMLEGKDIVACAQTGTGKTAAFALPIL 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 LE K + ++R L+L PTRELA Q+ +NF+K+G+ L + GG P Q K L Sbjct: 61 NKLEYKKKHQIR---ALVLTPTRELAVQIFENFKKFGRYLKLRACCVYGGAPSGPQRKAL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR+ D +G++++++IE+ V+DEADRMLDMGFI ++ I S +P RQ Sbjct: 118 RSGCDILIATPGRLNDFMVQGEIILSDIEVFVLDEADRMLDMGFIGDVRTIASRIPEARQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T++FSATM E+++++ L +P I V P+S AETI V Y + + K LL+ +L Sbjct: 178 TVMFSATMPKEIKELANELLHDPVDIRVAPPASPAETITQYLV--YCEKADKKRLLKDML 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S + K I+F K L L + G V IHG+ Q R L F+ + ++ Sbjct: 236 VSPEVTK-AIVFTRTKIGADRLTKKLIEDGIKVLTIHGDKTQGQRQNALQRFRTNQVDVL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + HVFN+D+P E+YIHRIGR GRAG+ G + +L E++ + + Sbjct: 295 VATDVAARGIDISGISHVFNYDLPEEDESYIHRIGRAGRAGKEGISISLCCHEELGLLAS 354 Query: 360 IEKLIEKKVDWLNGDLS 376 IEK+++K++ + + S Sbjct: 355 IEKMLKKEIPLIRTEYS 371 >gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8] gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8] Length = 493 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 161/371 (43%), Positives = 234/371 (63%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D GL P ++ ++ + GY PTPIQ + IP+V++ DV G AQTGTGKTA+F LP+L Sbjct: 19 FTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 78 Query: 61 --TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + R P R LIL PTRELA QV ++ ++Y K L A++ GG+ Q + Sbjct: 79 LMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKE 138 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG +VL+ TPGR+LDH + + ++ + ILV+DEADRMLDMGF+P ++ I L+P Sbjct: 139 ALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQ 198 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT ++E++K+ ++L +P IEV ++TA TI +A K A + Sbjct: 199 RQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQ--IAYKMPSDAKRAAVVH 256 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S+ + I+F N K L LE+ G +IHG+ Q RMK L FK G ++ Sbjct: 257 LVKSRG-LNQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGELE 315 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ V V N+D+P AE+Y+HRIGRTGRAG G+A L ++ + + Sbjct: 316 VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFL 375 Query: 358 DAIEKLIEKKV 368 IEKLI+++V Sbjct: 376 LDIEKLIKREV 386 >gi|269104692|ref|ZP_06157388.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161332|gb|EEZ39829.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] Length = 430 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 176/419 (42%), Positives = 252/419 (60%), Gaps = 12/419 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G S ++V A+ + GY K TPIQ + IP + + HDV AQTGTGKTA+F LP++ Sbjct: 1 MSFSAQGFSQELVKALTEIGYEKLTPIQKQAIPQLRRGHDVLANAQTGTGKTAAFSLPII 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R RM R LIL PTREL Q+A+N + Y + +LT + GG Q KK Sbjct: 61 QKMLDNPQPRSRMNVRALILAPTRELVEQIANNIKDYTRYTDLTTVAVFGGRKIATQEKK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+L+H +L++NIE LV DEADRMLDMGFI I+ I S V T Sbjct: 121 LESGCDILVATPGRLLEHLELQNVLLSNIEFLVFDEADRMLDMGFISAIRTILSNVNSTP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q +LFSAT + ++ K++ L PKRI V +STAET+ H V +K +L +L Sbjct: 181 QIMLFSATFSSQMNKLAGELLNKPKRISVTPENSTAETVAH--VVYPVDEERKREMLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ L LE G HG+ Q +R + L FKEG ++ Sbjct: 239 I-GKKNWQQVLVFVNYKETANQLVEELELDGIKAVLCHGDKAQGARRRALKEFKEGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+++AARGLDI + HV N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 298 MVATEVAARGLDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAVSFVSREEELTLI 357 Query: 359 AIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDRRKK 411 IE+LI + +V + + S + LEK++ + R NNP KS+ +RR + Sbjct: 358 QIERLIGQRIHRVQLVGYEPKSRDALLEKMNTKASFRDRRGRTNNPNEDKSSA-ERRAR 415 >gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis Nb-231] gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis Nb-231] Length = 429 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 159/368 (43%), Positives = 229/368 (62%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F GLS ++ AV GY PTPIQ + IPLV+ D+ AQTGTGKTA+F LP+L Sbjct: 1 MTFDCFGLSADILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R R PR L+L PTRELAAQV ++ YG++ L + GG+ Q L Sbjct: 61 QRLSAVPTRHRAPRALVLTPTRELAAQVRESVRSYGRHLPLRSTAVFGGVGINPQISALR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR+LDH + + ++ +EI V+DEADRMLDMGFI I+ + + +P RQ Sbjct: 121 SGVDVVVATPGRLLDHLQQRTVELSRVEIFVLDEADRMLDMGFIRDIRKVMAALPQKRQN 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + E++K+++ L +P ++ +S AE I H V AQ S+K ALL L+ Sbjct: 181 LLFSATFSGEIRKLADQILHDPASVDTAPRNSVAELITHK-VHPVAQ-SRKRALLAHLI- 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++F K L L++ G + AIH + Q +R K L +FK G ++++V Sbjct: 238 GNGKWSQVLVFTRTKHGANRLATQLDRDGLNATAIHSSKSQSARTKALQDFKRGRVRVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + HV N+++ N AE+Y+HRIGRTGRAG G+A +LV+ ++ KH+ I Sbjct: 298 ATDIAARGLDIEALPHVVNYELSNIAEDYVHRIGRTGRAGSQGQAVSLVSADERKHLANI 357 Query: 361 EKLIEKKV 368 E+L+ +++ Sbjct: 358 ERLLGRRL 365 >gi|114320766|ref|YP_742449.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227160|gb|ABI56959.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 427 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 173/374 (46%), Positives = 242/374 (64%), Gaps = 11/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY KPTP+Q + IP +LQ DV AQTGTGKTA F LPML Sbjct: 1 MSFDSLGLSAVLLRAVAEQGYSKPTPVQAQAIPAILQGGDVMAAAQTGTGKTAGFTLPML 60 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L E GR RVR LIL PTRELAAQV D+ + YG L A++ GG+ Q Sbjct: 61 ERLSQNRPEGGRRRVR---ALILTPTRELAAQVRDSVKTYGGKLPLKTAVIFGGVGMNPQ 117 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L RG D+++ TPGR+LDH +G + ++ +E+LV+DEADRMLDMGFI I+ + + VP Sbjct: 118 IQTLRRGVDIVVATPGRLLDHMGQGTVDLSGVEMLVLDEADRMLDMGFIRDIRRVIAAVP 177 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTL+FSAT + E+++++E L+NP +IEV ++ AE + +K ALL Sbjct: 178 KQRQTLMFSATFSKEIRQLAEGMLRNPTQIEVAARNTAAENVNQRV--HPVSRGEKRALL 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+Q D + ++F K L L++ G S AIHGN Q +R K L+ FK+G Sbjct: 236 SNLIQDGD-WRQVLVFTRTKHGADRLARQLDQDGLSSAAIHGNKSQSARTKALAQFKQGR 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRAGR G+A +LV ++ K Sbjct: 295 VRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGRGGEALSLVCVDEHK 354 Query: 356 HIDAIEKLIEKKVD 369 +D I KL+++ +D Sbjct: 355 LLDGIHKLLKRPID 368 >gi|253687917|ref|YP_003017107.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754495|gb|ACT12571.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 477 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 164/377 (43%), Positives = 238/377 (63%), Gaps = 16/377 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY PTP+Q + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KG+ R R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLNSREAQNKGKGR-RPVRALILTPTRELAAQIDENVKAYSKYLRLRSLVVFGGVSINP 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 120 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKL 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231 P RQ LLFSAT +DE++ ++ L NP +EV NTPS H + +K Sbjct: 180 PAKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKRRK 234 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL QL+ ++ + ++F K +L LEK G + AIHGN Q +R + L+NF Sbjct: 235 RELLSQLI-GENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANF 293 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K+G+I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA G+A +LV Sbjct: 294 KDGSIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCV 353 Query: 352 EDIKHIDAIEKLIEKKV 368 ++ K + IE+L+++++ Sbjct: 354 DEHKLLRDIERLLKREI 370 >gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium D16] gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium D16] Length = 628 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 159/368 (43%), Positives = 223/368 (60%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL P+++ A+ + GY KP+PIQ + IP L DV G AQTGTGKT +F P+L Sbjct: 1 MTFEDLGLCPQILAALKEEGYEKPSPIQEQAIPPALAGRDVLGCAQTGTGKTCAFAAPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L A R LIL PTRELA Q+ ++FE YG++ L A++ GG+ Q +KL Sbjct: 61 QRLSNKPASGHPIRALILTPTRELAIQIGESFEHYGRHLALRCAVIFGGVGQAPQVEKLG 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+ D + +G + +N++EI V+DEADRMLDMGFI ++ I +P +QT Sbjct: 121 KGVDILVATPGRLGDLYQQGFIHLNDLEIFVLDEADRMLDMGFIHDVKKILKWLPEKKQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ ++ + L +P R+ V+ SS E I + K LL LL Sbjct: 181 LFFSATMPKEIAELVNSLLHHPARVAVDPVSSPVEAIRQSVY--FVDRGNKTKLL-SLLM 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q +KN ++F K + L K G + AIHGN Q +R + L++FK G I+ +V Sbjct: 238 DQLGVKNALVFTRTKHGANKVARDLVKAGITAAAIHGNKSQTARQQALADFKSGAIRCLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ HVFN+++P E Y+HRIGRTGRAG G A + + I Sbjct: 298 ATDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGHGGTAVAFCDFSEKPLLKEI 357 Query: 361 EKLIEKKV 368 EKLI + + Sbjct: 358 EKLIGRAI 365 >gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895] gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895] Length = 454 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 238/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I ++ A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|4104820|gb|AAD02177.1| RNA helicase [Anabaena variabilis] Length = 425 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 165/374 (44%), Positives = 235/374 (62%), Gaps = 7/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +++ AV + GY KPTPIQ+++IP VL D+ AQTGTGKTASF LP+L Sbjct: 1 MSFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 I+ K R LIL PTRELAAQV + YGK L ++ GG+ Q Sbjct: 61 HYYPKIVLKALQCFLTIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQK 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 ++L+ D+L+ TPGR+LDH +G + ++ IEILV+DEADRMLDMGFI I+ I SL+P Sbjct: 121 QRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPK 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLF AT +D++++++ L P+ IEV + TA+T+ + +K LL Sbjct: 181 QRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKI--ERDRKRDLLA 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ +D ++F K L L + AIHGN Q +R L+ FK G++ Sbjct: 239 HLIR-KDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARGLDI ++ +V NFD+P E+Y+HRIGRTGRAG G+A +LV+ ++ Sbjct: 298 QVLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHL 357 Query: 357 IDAIEKLIEKKVDW 370 + IEKLIEK++ + Sbjct: 358 LADIEKLIEKRLPF 371 >gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9] gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9] Length = 457 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 166/374 (44%), Positives = 235/374 (62%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+LGL +V AV + GY +PTPIQ + IP VL DV AQTGTGKTA+F LP++ Sbjct: 2 MTFAELGLPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPII 61 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L P R LIL PTRELA Q+A + + Y K L + GG+ + Q Sbjct: 62 ARLRHYATHSVSPAMHPVRCLILTPTRELADQIAASVQSYTKYLPLRHTCVFGGVNMDPQ 121 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L RG D+++ TPGR+LDH + + +N +E+LV+DEADRMLDMGFI I+ I + +P Sbjct: 122 KADLMRGMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADRMLDMGFILDIRRILAQLP 181 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TRQTLLFSAT + E++K++ F ++P IEV ++TA T+E A A +K LL Sbjct: 182 KTRQTLLFSATFSPEIKKLAAEFQRDPVTIEVARQNTTAATVEQAVYAVDA--GQKRRLL 239 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEG 294 +L+ ++ M I+FC K+ L L AIHG+ Q++R+ L+ FK+G Sbjct: 240 ARLI-NERAMSQVIVFCRTKQGADRLARELRNFDRLDAEAIHGDKAQQARLDTLAAFKDG 298 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++++VA+D+AARGLD+ D+ V NFD+PN E+Y+HRIGRTGRAG+ G A +L+ E+ Sbjct: 299 KLRILVATDVAARGLDVSDLPFVVNFDLPNSPEDYVHRIGRTGRAGQSGVAISLMDAEEQ 358 Query: 355 KHIDAIEKLIEKKV 368 K ++AIEKL + + Sbjct: 359 KLLEAIEKLTRQTL 372 >gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus 307] gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus 307] Length = 435 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 155/375 (41%), Positives = 235/375 (62%), Gaps = 5/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF LGL+P+++ + G + PTPIQ + IP + DV G+A+TG+GKTA+F LPM+ Sbjct: 1 MDFDMLGLAPRLIAELKSQGIIDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMI 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L E+G+ + R LIL PTRELA Q+ +N Y + +L L++GG Q +K Sbjct: 61 DMLLKEQGKPEGKTARALILAPTRELAKQIQENLAAYTQGTHLKTMLVVGGAGITGQIRK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG D+L+ TPGR++D R + + + + LV+DEAD+MLDMGFI ++ I L+ R Sbjct: 121 LERGVDLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATM + +++ FL+NP R++V+ P E IE V A+ +K LL+ + Sbjct: 181 QTMLFSATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQS-VHFVAKAAKTDLLLELI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +D + I+F K L L +GF +IHGN Q R + +++FK G +++ Sbjct: 240 DKHRD--ERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP+V H++N+D+PN AENY+HRIGRT RAG G A A +++ + Sbjct: 298 LVATDVAARGLDIPEVKHIYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEMGELR 357 Query: 359 AIEKLIEKKVDWLNG 373 I+K ++ + G Sbjct: 358 DIQKAMKADIPVAGG 372 >gi|90579695|ref|ZP_01235504.1| ATP-dependent RNA helicase [Vibrio angustum S14] gi|90439269|gb|EAS64451.1| ATP-dependent RNA helicase [Vibrio angustum S14] Length = 455 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 157/365 (43%), Positives = 226/365 (61%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL+ +V AV + GY PTPIQ K IP+ L ++ AQTGTGKTA FVLP+L Sbjct: 1 MPFSKLGLNDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTAGFVLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ G + R + R LIL PTRELA QV DN ++Y K+ NLT + GG+ +E Q ++L Sbjct: 61 QMLDDGTKVRAKRIRALILAPTRELAVQVEDNIKQYSKHLNLTSMAMYGGVDYEPQKRRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + IEILV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTKRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSAT++D+++ +++ ++NP I V +S I+ V K ALL L+ Sbjct: 181 NMLFSATLSDQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTV--DKDMKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q Q +IF K L LEK+G S + H Q R ++L +FK G +Q + Sbjct: 239 QEQ-KWDQALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ +A+RG+DI + V N+D+P E Y+HRIGRTGRAG G+A + V++++ K++ Sbjct: 298 IATGVASRGIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSRDNFKNLCM 357 Query: 360 IEKLI 364 IE L+ Sbjct: 358 IESLL 362 >gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34] gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34] Length = 526 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 236/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R V+ L++ PTRELA Q + ++G+ + V + GG E Q K L Sbjct: 61 DKIDTNRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++++E L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F+QNP+ ++V T + ++ ++ Q K + +L+ Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQ--DKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +G+ IHG++DQ R+++L +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+HG++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354 Query: 361 EKLIEKKVDWL 371 EKL +K++ L Sbjct: 355 EKLTKKRMKGL 365 >gi|205352078|ref|YP_002225879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271859|emb|CAR36694.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627120|gb|EGE33463.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 453 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHNL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|307130576|ref|YP_003882592.1| putative ATP-dependent RNA helicase [Dickeya dadantii 3937] gi|306528105|gb|ADM98035.1| Putative ATP-dependent RNA helicase [Dickeya dadantii 3937] Length = 454 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 163/374 (43%), Positives = 237/374 (63%), Gaps = 12/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY +PTP+Q + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L +A+ R P R LIL PTRELAAQ+ +N + Y K L ++ GG+ Q Sbjct: 61 QLLNGRPSQAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+LI TPGR+LD ++ + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ LLFSAT +DE+++++ L NP +EV NTPS H + +K L Sbjct: 181 RQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKKRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ D + ++F K +L L K G + AIHGN Q +R + L+NFK+G Sbjct: 236 LSHLIGKHD-WRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 295 DIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEH 354 Query: 355 KHIDAIEKLIEKKV 368 K + IE+L+++++ Sbjct: 355 KLLRDIERLLKREI 368 >gi|197334932|ref|YP_002155940.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] gi|197316422|gb|ACH65869.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] Length = 431 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 172/429 (40%), Positives = 254/429 (59%), Gaps = 12/429 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P++V A+ + GY K TPIQ K IPL + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFSSQGFAPEIVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVI 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K A R R LIL PTRELA Q+A N Y K +LTV + GG +Q + Sbjct: 61 QQLLDSKKSATRRTARALILAPTRELAEQIAVNIADYTKYTSLTVTSVFGGKKMSSQERA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H + + N+E LV DEADRMLDMGF+ I+NI V + Sbjct: 121 LEPGVDILVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q +LFSAT + ++ K++ + L+ PKRI V+ ++TA TI H V +K LL +L Sbjct: 181 QIMLFSATSSAQMNKLASDILRKPKRISVDPENTTASTIAH--VVYPVDEERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ + L+ G HG+ Q +R + L FKEG ++ Sbjct: 239 I-GRKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 298 MVATDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAISFVSREEELTVV 357 Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDR-RKK 411 +E LI+ ++V+ + + + ++K++ ++ R NNP +S+ R R K Sbjct: 358 QVETLIQQRIRRVEQPGYEPKNRDAYIDKVNTKSAFKNRKGRTNNPNEDQSSAERRMRLK 417 Query: 412 NYSSQKSHI 420 N K+ I Sbjct: 418 NVIQNKARI 426 >gi|325266846|ref|ZP_08133517.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394] gi|324981587|gb|EGC17228.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394] Length = 452 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 155/366 (42%), Positives = 240/366 (65%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGL ++V A+ + GY +PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 4 FAELGLGAEIVAALEEQGYQQPTPIQEAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N ++Y KN L +L GG+ + Q Sbjct: 64 LKRYANASASPAMHPVRMLVLTPTRELADQIDQNTQRYIKNLPLRHTVLFGGVNMDKQTA 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L G ++++ T GR+LDH + +++N +EI+V+DEADRMLDMGFI I+NI ++P Sbjct: 124 QLRSGCEIVVATVGRLLDHVKQKNIVLNKVEIVVLDEADRMLDMGFIDDIRNIMQMLPRP 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT ++K++++F+ +P+ +EV ++T +E +A +K LL++ Sbjct: 184 RQTLLFSATFAPAIRKLAQDFMHSPEVVEVAAQNTTNANVEQHVIAV--DTHRKRDLLER 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M+ I+FC K++ + L ++G SV AIHG+ Q++R+ +LS FK G+++ Sbjct: 242 LIVDLG-MQQVIVFCKTKQSADQVARDLARRGLSVSAIHGDKSQQTRLDVLSQFKAGSLR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P +AE+Y+HRIGRTGRAG G A +++ + + K Sbjct: 301 VLVATDVAARGLDIAELPFVVNYEMPVQAEDYVHRIGRTGRAGADGVAISMMDESEQKMY 360 Query: 358 DAIEKL 363 DAI+ L Sbjct: 361 DAIKAL 366 >gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] Length = 448 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 157/373 (42%), Positives = 239/373 (64%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IP VL+ HD+ AQTGTGKTA+F LPML Sbjct: 1 MKFEELNLAPAILKAVQETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L +G A + R L+L PTRELAAQV ++ +YGK ++ ++ GG+ Q Sbjct: 61 HRLSQGTAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +++RG D+L+ TPGR+LD +G L ++ +E+LV+DEADRMLDMGFI ++ + +LVP Sbjct: 121 IDRIKRGVDILVATPGRLLDLQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE+++++ L+NP+ I+V ++T + I V KK +L Sbjct: 181 KDKQSLLFSATFSDEIRELANTLLKNPQSIQVTPSNTTVQRITQ--VIHPVGRGKKKQVL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++Q Q ++F K N+ L K G A+HGN Q +R + L+ FK G Sbjct: 239 LHIIQ-QHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGE 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI D+ HV N+++PN +E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 298 IRALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGASGEAVSLVCMDEEG 357 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++++ Sbjct: 358 FMMDIERFTKQQI 370 >gi|78224236|ref|YP_385983.1| DEAD/DEAH box helicase-like [Geobacter metallireducens GS-15] gi|78195491|gb|ABB33258.1| DEAD/DEAH box helicase-like protein [Geobacter metallireducens GS-15] Length = 452 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 165/409 (40%), Positives = 242/409 (59%), Gaps = 9/409 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+L L P ++ AV GY PTPIQ + IP L+ D+ AQTGTGKTA+FVLP L Sbjct: 1 MTFAELNLLPPILKAVAACGYTDPTPIQAQAIPRALEGRDLLATAQTGTGKTAAFVLPAL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + R PR L+L PTRELA QV D YGK + ++GG+P+ Q + L Sbjct: 61 QRLARPAQKPGRGPRVLVLTPTRELAQQVTDAVRSYGKFLRIRSGAILGGMPYREQLRLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR++D +R L ++ +E+L++DEADRMLDMGF + + + P RQ Sbjct: 121 SAPVDLIVATPGRLVDLLDRRSLDLSRLELLILDEADRMLDMGFSDDVDRVAAASPSDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238 TLLF+ATM + +++ L P+RIEV +T E IE VA S K LLQ L Sbjct: 181 TLLFTATMDATMARLAGRLLNEPERIEVAGTKTTHEHIEQRLHVAD--DLSHKNRLLQHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + D ++ IIF K++ N+ L QG S A+HG++ Q +R + ++ K+G I+L Sbjct: 239 ITDGD-VRKAIIFSATKRDAENMAIELRSQGHSAAALHGDMPQSARNRTIAAMKQGRIRL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV NFD+P AE+Y+HRIGRTGRAG G A + + ++ ++ Sbjct: 298 LVATDVAARGLDVSGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVSYLA 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTG 405 IE+ I + + + L P PL ++ + + + P+KS G Sbjct: 358 RIERYIGQTLP--EHQIPGLEPRRPLHRVSTGRGSRPGNSTGGPRKSYG 404 >gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338] gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338] Length = 526 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 236/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R V+ L++ PTRELA Q + ++G+ + V + GG E Q K L Sbjct: 61 NKIDTNRNVVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++++E L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F+QNP+ ++V T + ++ ++ Q K + +L+ Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQ--DKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +G+ IHG++DQ R+++L +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+HG++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354 Query: 361 EKLIEKKVDWL 371 EKL +K++ L Sbjct: 355 EKLTKKRMKGL 365 >gi|325977801|ref|YP_004287517.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 526 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 236/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R V+ L++ PTRELA Q + ++G+ + V + GG E Q K L Sbjct: 61 DKIDTNRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++++E L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F+QNP+ ++V T + ++ ++ Q K + +L+ Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQ--DKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +G+ IHG++DQ R+++L +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+HG++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354 Query: 361 EKLIEKKVDWL 371 EKL +K++ L Sbjct: 355 EKLTKKRMKGL 365 >gi|217974215|ref|YP_002358966.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|217499350|gb|ACK47543.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 412 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 176/410 (42%), Positives = 246/410 (60%), Gaps = 20/410 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+ +V + GY PTPIQ++ IP +L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSVLSLNSTLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60 Query: 61 ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + L++ A VR R L+L PTRELA QV +F KY K ++ V + GG+ +A Sbjct: 61 HHLLALSPLQELTA-VRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDA 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q G DVLI TPGR+LDH +G L + + +LV DEADRMLDMGF+ IQ + V Sbjct: 120 QVAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQV 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQTLLFSAT+ + +S+ L++PK IEV ++TA IE A A +K L Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDA--DRKTEL 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L++S++ +IF K+ V L L K A HG++ Q +R K+L FK+G Sbjct: 238 VSHLVRSKN-WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 IQ++VA+D+AARGLDI ++ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED Sbjct: 297 KIQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQEDA 356 Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 ++ +E +++K++ WL G P K+D R+N QK Sbjct: 357 LLLEEVEVVLDKRLPQQWLTG----FEPDFNKMD----AEPRRNGKAAQK 398 >gi|318041670|ref|ZP_07973626.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0101] Length = 407 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 159/350 (45%), Positives = 225/350 (64%), Gaps = 4/350 (1%) Query: 16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG-RARVRMPR 74 +L+ GY P+PIQ + IP VL+ DV AQTGTGKTA F LPML L G AR + R Sbjct: 1 MLEKGYTNPSPIQTQCIPAVLEGRDVMAAAQTGTGKTAGFTLPMLERLRHGPHARNNVVR 60 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 L+L PTRELAAQV +N Y ++ +L ++ GG+ Q +L GADVL+ TPGR++ Sbjct: 61 ALVLTPTRELAAQVGENVAAYSRHLDLRSDVVFGGVKINPQMMRLRGGADVLVATPGRLM 120 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 D + + +N +EILV+DEADRMLDMGFI IQ I +L+P RQ LLFSAT ++K+ Sbjct: 121 DLAQQNAVKLNRVEILVLDEADRMLDMGFIRDIQKILALLPAKRQNLLFSATFEASIKKL 180 Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254 + L NP +++ + TA T+EH ++K LL L++S D + ++F Sbjct: 181 ATGLLHNPVQLQATPENRTATTVEHLL--HPCDMARKPDLLCHLIKSND-WQQVLVFSRT 237 Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 K + L ++G + AIHGN Q +R + L+ FK G ++++VA+D+AARG+DI + Sbjct: 238 KHGANRIADRLTQEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVATDIAARGIDIHQL 297 Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 HV N D+PN+AE+Y+HRIGRTGRAG +G A +LVA E+ + + AIE+LI Sbjct: 298 PHVVNLDLPNQAEDYVHRIGRTGRAGCNGHAVSLVAAEEHELLRAIERLI 347 >gi|212636318|ref|YP_002312843.1| DEAD box helicase [Shewanella piezotolerans WP3] gi|212557802|gb|ACJ30256.1| Helicase, DEAD box [Shewanella piezotolerans WP3] Length = 446 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 161/362 (44%), Positives = 231/362 (63%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V AV + GY PTPIQ K+IP++L ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSNPIVTAVTEQGYTSPTPIQAKSIPVILSGRNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + + R + R LIL PTRELA QV N YGK+ LT + GG+ + Q ++L Sbjct: 61 QLLSQSQTQRKKRIRALILTPTRELAVQVEANIALYGKHLALTSMAMYGGVDAKPQRQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + ++ILV+DEADRMLDMGFI I I +P RQ Sbjct: 121 LDGVDILVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDIDKIMDKLPADRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT++ +++ +++ + P I V + + IE T KK ALL L+ Sbjct: 181 SLLFSATLSHQVKALAKTAIDKPVEISVIANTDSKPKIEQWL--TTVDKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +++ +IF K+ L LEK+G + IHG Q R KIL++FK G I L+ Sbjct: 239 K-ENSWHQALIFIETKQGAAKLVSQLEKRGINAECIHGGRSQEVREKILADFKAGEIGLL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ +AARGLDI ++ V N+D+P A++YIHRIGRTGRAG +G+A +LV+K+D K++ Sbjct: 298 IATGVAARGLDIDELPLVINYDLPYPADDYIHRIGRTGRAGANGEAVSLVSKDDFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia phymatum STM815] gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum STM815] Length = 522 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 164/371 (44%), Positives = 230/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSEPLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 T---ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + R+ R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 QRLLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+++ TPGR+LDH + + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 ALRRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++++ L P IEV ++TAET+ +K LL Sbjct: 181 RQNLLFSATFSDEIKALADSLLDAPALIEVARRNTTAETVAQKIHPV--DRDRKRELLTH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+Q Sbjct: 239 LIKQHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQ 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 357 Query: 358 DAIEKLIEKKV 368 IEKLI++ V Sbjct: 358 KDIEKLIKRAV 368 >gi|33598813|ref|NP_886456.1| putative ATP-dependent RNA helicase [Bordetella parapertussis 12822] gi|33574943|emb|CAE39607.1| putative ATP-dependent RNA helicase [Bordetella parapertussis] Length = 481 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 161/358 (44%), Positives = 228/358 (63%), Gaps = 6/358 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR--- 71 A+ D GY PTPIQ + IPLVLQ D+ AQTGTGKTA F LP+L L + + R Sbjct: 3 AIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPG 62 Query: 72 MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131 PR LIL PTREL AQVA++ + YGK +L+ ++ GG+ Q L++ D+L+ TPG Sbjct: 63 RPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPG 122 Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191 R+LDH + + ++ +EILV+DEADRMLDMGFI I+ + +L+P RQ LLFSAT +DE+ Sbjct: 123 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 182 Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251 + ++ L +P + V TP +TA + V Q+ K+ L+ L++ + ++F Sbjct: 183 RSLARGVLNDPGEVSV-TPRNTATELVTQTVHLVEQHHKRD-LVSHLIR-ESGWHQVLVF 239 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 K L L K G S AIHGN Q +R + LS FK+G++ ++VA+D+AARGLDI Sbjct: 240 TRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDI 299 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 + V NF++PN E+Y+HRIGRTGRAG G A +LV +IK + AIE+LI+K ++ Sbjct: 300 DQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIE 357 >gi|254428186|ref|ZP_05041893.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881] gi|196194355|gb|EDX89314.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881] Length = 457 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 156/370 (42%), Positives = 231/370 (62%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL + AV + GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MHFSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G AR R L+L PTRELAAQVA++ YGKN LT +++ GG+ Q ++L Sbjct: 61 ERLRTGTPARNNQVRALVLTPTRELAAQVAESVSTYGKNLPLTSSVVFGGVKINPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR+LD + + + +++E+L++DEADRMLDMGFI I+ I S +P RQ Sbjct: 121 RGGCDVLVATPGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILSKLPPKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT + E++ +++ + +P ++++ ++T E + +K ALL L+ Sbjct: 181 NLMFSATFSPEIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPV--DKKRKPALLTHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++F K L LE G AIHGN Q +R + L++FK G ++ + Sbjct: 239 QEHGWFQV-LVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKNGKVRAL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N D+PN E+Y+HRIGRTGRAG G+A +LV+ ++ + + Sbjct: 298 VATDIAARGLDIEQLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLVSADEFQQLKD 357 Query: 360 IEKLIEKKVD 369 IE+L +++++ Sbjct: 358 IERLTQQQLE 367 >gi|59713557|ref|YP_206332.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] gi|59481805|gb|AAW87444.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] Length = 434 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 168/416 (40%), Positives = 249/416 (59%), Gaps = 20/416 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +++ V + G+ + TPIQ + IPLVLQ HDV AQTGTGKTA+F LP++ Sbjct: 17 MSFASLGLTKQILTTVAELGFKEATPIQEQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLI 76 Query: 61 TILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + ++ R+LIL PTRELA QV D+ Y +N L V + GG Q Sbjct: 77 QRLIESPIERHEESKVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQK 136 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L GAD+LI TPGR+LDH + + +N E LV+DEADRMLDMGFIP I+ I +P Sbjct: 137 ENLLGGADILIATPGRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPD 196 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT + ++++++ L PK ++V +STAET+E +K LL Sbjct: 197 ERQTLFFSATFSKKVREIAYYMLNKPKEVQVTPTNSTAETVEQMVYP--VDKHRKSELLA 254 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F K+ L L+K G +I+G+ Q +R++ L FK G + Sbjct: 255 YLIGSRN-WQQVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKV 313 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+++P +AE+Y+HRIGRTGRAG GKA +L++ ++ Sbjct: 314 RALIATDVAARGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAISLMSMDEEYL 373 Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 + AIE L++ ++ +WL G N PL R++ P + D+RK Sbjct: 374 LKAIETLLDTRLPQEWLQGYEPDPNAPL-----------REDRPRQSRGRSSDKRK 418 >gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 402 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 160/348 (45%), Positives = 225/348 (64%), Gaps = 5/348 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL+ ++ A+ GY PTPIQ ++IP +LQ DV G+AQTGTGKTASF LP+L Sbjct: 5 FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64 Query: 63 LE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ K RA + R L+L PTRELA QV +F+ YG +Y L AL+ GG+ Q K + Sbjct: 65 LDQFKKRAMPKSCRILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMA 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR+LD ++G + ++++E LV+DEADRMLDMGFI I+ I ++VP RQT Sbjct: 125 GGVDVLVATPGRLLDLIDQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVAMVPKQRQT 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM D + ++ + L P R+EV SST + I+ + + K LL +L Sbjct: 185 VLFSATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVL--FVDREHKRTLLTDILG 242 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D ++ ++F K + LEK G AIHGN Q +R K LS+F++G I+ +V Sbjct: 243 GADVVR-ALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALSDFRDGKIKALV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 A+D+AARG+D+ + HV NF++PN E+Y+HRIGRT RAG G A +L Sbjct: 302 ATDIAARGIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSL 349 >gi|319957241|ref|YP_004168504.1| dead/deah box helicase domain protein [Nitratifractor salsuginis DSM 16511] gi|319419645|gb|ADV46755.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis DSM 16511] Length = 421 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 159/368 (43%), Positives = 235/368 (63%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL P ++ AV GY PTPIQ + IP VL+ HDV AQTGTGKTA F LP+L Sbjct: 8 FDTLGLDPAILKAVSAEGYTTPTPIQAQAIPAVLEGHDVLAAAQTGTGKTAGFTLPLLER 67 Query: 63 LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + R R L+L PTRELAAQVA++ YGKN + ++ GG+ E Q + + Sbjct: 68 LIQNPRQMKARQVRALVLTPTRELAAQVAESVRTYGKNLKIRSTVVYGGVGIEPQKRAIA 127 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++I TPGR+LD N+ + ++ +E L++DEADRMLDMGFI I+ I + P RQT Sbjct: 128 RGCEIVIATPGRLLDLANQRAIDLSALETLILDEADRMLDMGFIHDIKKIIAQTPKERQT 187 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + E+++++ L++P IEV ++TAE + + +K LL ++++ Sbjct: 188 LLFSATFSPEIKRLAAGMLKDPVLIEVARQNTTAEQVSQKV--HHVDRHRKQELLIRMIK 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K ++F K L L++ G AIHGN Q +RMK L +FKE ++++V Sbjct: 246 EKG-WKQVLVFTRTKHGANKLSKQLDQAGIPSEAIHGNKTQNARMKALKSFKENRVRVLV 304 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV NF++PN AE+Y+HRIGRTGRAG G+A +LV ++ + + I Sbjct: 305 ATDIAARGIDIAALPHVVNFELPNVAEDYVHRIGRTGRAGSEGEALSLVCVDEHQLLRNI 364 Query: 361 EKLIEKKV 368 E+ I+ ++ Sbjct: 365 ERFIKAEI 372 >gi|189426565|ref|YP_001953742.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ] gi|189422824|gb|ACD97222.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ] Length = 436 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 155/375 (41%), Positives = 235/375 (62%), Gaps = 15/375 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LGL P+++ A+ GY PTPIQ + IP++ + D+ AQTGTGKTA+F LP++ Sbjct: 6 VSFDSLGLRPELLSAITSLGYTSPTPIQAEAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 65 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + R PR L+L PTRELAAQV+D +Y + +L ++ GG+ +AQ ++ Sbjct: 66 QMLAETTPAEKRRKPRALVLVPTRELAAQVSDEMNRYARRLSLRSTMIYGGVTIQAQIER 125 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+++ TPGR+LDH RG + ++ I+ LV+DEADRMLD+GFI I+ + +P Sbjct: 126 LHRGVDIVVATPGRLLDHAERGTIDLSRIKFLVLDEADRMLDLGFIDEIKKVAEYLPAKH 185 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQ 237 Q LLFSAT + ++++++ L PKR+EV + TAE + A Y + S+K +L Sbjct: 186 QALLFSATYSQNIKQLADQLLDQPKRVEVARRTLTAEAVTQ---AVYQVERSRKREMLSF 242 Query: 238 LLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L++ KNG ++F + L L G AIH N Q R + L+ FK+ Sbjct: 243 LIR-----KNGWNQVLVFTRTRYGADKLTEELLFDGIKAAAIHSNKSQSIRTRTLAEFKQ 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++VA+D+AARGLDI + HV N+D+P E+Y+HRIGRTGRAG G A +LV++E+ Sbjct: 298 GAFRVLVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEEGIAISLVSQEE 357 Query: 354 IKHIDAIEKLIEKKV 368 + AIEKL+++ + Sbjct: 358 QILLAAIEKLVKQSI 372 >gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium radiotolerans JCM 2831] Length = 506 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 156/381 (40%), Positives = 235/381 (61%), Gaps = 6/381 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D GL+ V+ A+ +AGYV PTPIQ + IP ++ D+CGIAQTGTGKTA+F LP+L Sbjct: 4 FTDFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L RA R R L+L PTRELA Q+A++F YG++ + T ++ GG+ Q + L Sbjct: 64 LSLSDRRAPRRGCRVLVLSPTRELANQIAESFTDYGRHLSYTTTVVFGGVTISRQERALA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR++D +R L + +EILV+DEAD+MLD+GFI ++ I ++P RQ+ Sbjct: 124 PGVDILVATPGRLIDLVDRRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPEKRQS 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM + ++ +L +P ++ V ++TAE +E + + K ALL +L+ Sbjct: 184 LFFSATMPKNIAGLAAQYLTDPVQVAVTPVATTAERVEQEVI--FVHTGAKQALLGHILR 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++F K + L+K G + AIHGN Q R + L+ FK+G+ +++V Sbjct: 242 D-PAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV NFD+PN E+Y+HRIGRT RAG G A + E+ ++ I Sbjct: 301 ATDIAARGIDVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRDI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 E++ +KV + G PP Sbjct: 361 ERVTRQKVP-VAGFPEGFTPP 380 >gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042] Length = 454 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV+ ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVSRRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|28900445|ref|NP_800100.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|260362335|ref|ZP_05775298.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|260877397|ref|ZP_05889752.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|260898434|ref|ZP_05906930.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|28808756|dbj|BAC61933.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|308085113|gb|EFO34808.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308090744|gb|EFO40439.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|308111119|gb|EFO48659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|328470398|gb|EGF41309.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329] Length = 430 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 163/408 (39%), Positives = 249/408 (61%), Gaps = 15/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P+VV A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LPM+ Sbjct: 1 MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60 Query: 61 T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ GR A + R LIL PTRELA Q+ADN + Y K +L+V + GG +Q Sbjct: 61 QQLLDSGRTASRKTARALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQVSA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H +G + + N+E LV DEADR+LDMGFI ++ I V Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++++ L+ PKRIEV ++TA T+ H +K LL +L Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAHTVAHVLYPV--DQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ ++ L+ G HG+ Q +R + L FK G +++ Sbjct: 239 I-GRKNWQQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +++ + Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398 +E LI++++ + +L+ P +EK++ ++ R+NNP Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403 >gi|119775819|ref|YP_928559.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B] gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis SB2B] Length = 533 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 158/369 (42%), Positives = 232/369 (62%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ A+ GY P+PIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + +A + R LIL PTRELAAQ+ADN Y K L ++ GG+ Q L Sbjct: 61 ELLSQTQKAGPKQVRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR+LD + + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++ ++ L N + V +S AE+++ V ++K ALL +L Sbjct: 181 NLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPV--DKNQKPALLAELT 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++FC K L ++ +G AIHGN Q +R + L++FK G I+++ Sbjct: 239 RFY-RWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRML 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DI ++ +V NF++P+ E+Y+HRIGRTGRAG G+A +LV E+ K + Sbjct: 298 IATDIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRD 357 Query: 360 IEKLIEKKV 368 IE+LI++ + Sbjct: 358 IERLIKQSL 366 >gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82] Length = 441 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT++D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATLSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|33603888|ref|NP_891448.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] gi|33568864|emb|CAE35278.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] Length = 481 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 161/358 (44%), Positives = 228/358 (63%), Gaps = 6/358 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR--- 71 A+ D GY PTPIQ + IPLVLQ D+ AQTGTGKTA F LP+L L + + R Sbjct: 3 AIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPG 62 Query: 72 MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131 PR LIL PTREL AQVA++ + YGK +L+ ++ GG+ Q L++ D+L+ TPG Sbjct: 63 RPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPG 122 Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191 R+LDH + + ++ +EILV+DEADRMLDMGFI I+ + +L+P RQ LLFSAT +DE+ Sbjct: 123 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 182 Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251 + ++ L +P + V TP +TA + V Q+ K+ L+ L++ + ++F Sbjct: 183 RSLARGVLNDPGEVSV-TPRNTATELVTQTVHLVEQHHKRD-LVSHLIR-ESGWHQVLVF 239 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 K L L K G S AIHGN Q +R + LS FK+G++ ++VA+D+AARGLDI Sbjct: 240 TRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDI 299 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 + V NF++PN E+Y+HRIGRTGRAG G A +LV +IK + AIE+LI+K ++ Sbjct: 300 DQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIE 357 >gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] Length = 506 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 158/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL +SP ++ A+ Y +PTPIQ + IP VL D+ G AQTGTGKTA+F +PM+ Sbjct: 17 MTFQDLNISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI 76 Query: 61 TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + R R L+L PTRELA Q++DN + Y + L ++GG+ + Q + Sbjct: 77 QLLNEQPPKPGMARRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++GAD+LI TPGR+LD N+ ++ + ++EILV+DEADRMLDMGFI ++ I S +P Sbjct: 137 ALQQGADILIATPGRLLDLMNQKRIDLQHVEILVLDEADRMLDMGFIHDVKRIISKMPSK 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTL FSATM E+ ++ + LQNP ++E+ SSTAE I+ + K L + Sbjct: 197 KQTLFFSATMPAEITQLVKTLLQNPVKVEITPVSSTAERIKQSVY--LLETGNKQKQLNE 254 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ ++ + ++F K+ + L K + AIHGN Q SR L NFK G + Sbjct: 255 LMKD-PSIVSALVFTRTKRGADRVVRDLTKVNITAQAIHGNKSQVSRQTALKNFKSGETR 313 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ HV NF++PN E Y+HRIGRTGRAG G A + ++I + Sbjct: 314 VLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEIPFL 373 Query: 358 DAIEKLIEKKV 368 IEKLI K + Sbjct: 374 RDIEKLIGKSI 384 >gi|87198262|ref|YP_495519.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM 12444] gi|87133943|gb|ABD24685.1| DEAD/DEAH box helicase-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 498 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 161/376 (42%), Positives = 233/376 (61%), Gaps = 11/376 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGL+ ++ A+ GY PTPIQ + IP +L+ D+ GIAQTGTGKTA+F LP L Sbjct: 4 FSDLGLAEPILRALETKGYNDPTPIQRQAIPALLEGRDLLGIAQTGTGKTAAFALPSLHR 63 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R P R L+L PTRELAAQ+ADN + Y +N NL V + GG+P Q ++L Sbjct: 64 L-AANPQPRKPASCRMLVLSPTRELAAQIADNMKGYARNLNLIVDCVFGGVPIGKQARRL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + L + EI V+DEAD+M+D+GFI ++ + +L+P TRQ Sbjct: 123 VPGVDILVATPGRLLDLIDNRALTLGRTEIFVLDEADQMMDLGFIHALKRVANLLPKTRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL---- 235 +L FSATM ++ + + F+ NP R+EV S+TAE +E T+ ++K ALL Sbjct: 183 SLFFSATMPKAIEDLGKQFIVNPVRVEVAPNSTTAERVEQ--YVTFINQAEKQALLTLRI 240 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + LL++++ + ++F K + L G AIHGN Q R L F++G+ Sbjct: 241 RDLLKTKE-LDRALVFTRTKHGADRVVRHLSSAGIDARAIHGNKSQAQRTAALEAFRQGS 299 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++VA+D+AARG+D+ V HVFNF++PN E Y+HRIGRT RAG G A + A ++ Sbjct: 300 CPVLVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGIAISFCAPDEKP 359 Query: 356 HIDAIEKLIEKKVDWL 371 ++ IE+L KVD L Sbjct: 360 YLKDIERLTRVKVDAL 375 >gi|162448970|ref|YP_001611337.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56'] gi|161159552|emb|CAN90857.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56'] Length = 624 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 221/368 (60%), Gaps = 2/368 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG++P ++ + + GY +PTPIQ + IP +L D+ G A TGTGKTA+F LP+L Sbjct: 10 FAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLLQR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE G R+P L+L PTRELA QVA+ +YG+ + V + GG PF Q + L RG Sbjct: 70 LEIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLRALRRG 129 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR LDH RG L ++ I +V+DEAD MLDMGF ++ I S P RQT+L Sbjct: 130 VHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGARQTVL 189 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSAT+ + ++ L+ P R+++ + + Y + K A L ++L Sbjct: 190 FSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRVLDM 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D + I+FC + V L +L +G+ A+HG Q R ++++ F+ GT +L+VA Sbjct: 250 EDP-SSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELLVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HV N+DVP E Y+HRIGRTGRAGR G A TLV + I +E Sbjct: 309 TDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHYLIRNVE 368 Query: 362 KLIEKKVD 369 +L ++++ Sbjct: 369 RLTGQRIE 376 >gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167] Length = 454 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 237/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|167950812|ref|ZP_02537886.1| DEAD/DEAH box helicase domain protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 415 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 164/371 (44%), Positives = 242/371 (65%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY + TP+Q + IP++L DV AQTGTGKTA F LP+L Sbjct: 1 MSFEKLGLSGPILRAVSEQGYTQTTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFTLPLL 60 Query: 61 TILE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +LE +G+ R R R L+L P RELAAQV ++ E+YGK L ++ GG+ Q + Sbjct: 61 ELLEEHAQGKGR-RPVRALVLTPNRELAAQVGESVEQYGKYLPLKSTVIFGGVKINPQIE 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LDH ++ L +++IEILV+DEADRMLDMGFI I+ + L+P Sbjct: 120 KLRHGVDILVATPGRLLDHVSQKTLDLSHIEILVLDEADRMLDMGFIHDIRKVLRLLPHE 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT + E+++++ + L P++IEV ++ AE + V ++K LL Sbjct: 180 RQNLLFSATYSQEIKRLASDLLNQPEQIEVARRNTAAELVSQ--VVYPVDKARKRELLSH 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ + + + ++F K L LEK G S AIHGN Q +R + L+NFK G ++ Sbjct: 238 MIGA-NNWRQVLVFTRTKHGANRLAQQLEKDGLSAAAIHGNKSQGARTRALANFKSGEVR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRAG G+A +LV ++ K + Sbjct: 297 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGNEGEAVSLVCIDEHKLL 356 Query: 358 DAIEKLIEKKV 368 IE+L+++K+ Sbjct: 357 RDIERLLKRKI 367 >gi|153839129|ref|ZP_01991796.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|260902834|ref|ZP_05911229.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|149747384|gb|EDM58352.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|308107831|gb|EFO45371.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] Length = 430 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 163/408 (39%), Positives = 249/408 (61%), Gaps = 15/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P+VV A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LPM+ Sbjct: 1 MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60 Query: 61 T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ GR A + R LIL PTRELA Q+ADN + Y K +L+V + GG +Q Sbjct: 61 QQLLDSGRTASRKTARALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQISA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H +G + + N+E LV DEADR+LDMGFI ++ I V Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++++ L+ PKRIEV ++TA T+ H +K LL +L Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAHTVAHVLYPV--DQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ ++ L+ G HG+ Q +R + L FK G +++ Sbjct: 239 I-GRKNWQQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +++ + Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398 +E LI++++ + +L+ P +EK++ ++ R+NNP Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403 >gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469] gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469] Length = 454 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|254452993|ref|ZP_05066430.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238] gi|198267399|gb|EDY91669.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238] Length = 439 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 156/370 (42%), Positives = 232/370 (62%), Gaps = 5/370 (1%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63 LGL+P+++ + G V PTPIQ + IP + DV G+A+TG+GKTA+F LPM+ +L Sbjct: 2 LGLAPRLIAELKSQGIVDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLLK 61 Query: 64 EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123 E+G+ + R LIL PTRELA Q+ +N E Y K +L L++GG Q +KLERG Sbjct: 62 EQGKPEGKTARALILAPTRELAKQIQENLEAYTKGTHLKTMLVVGGAGITGQIRKLERGV 121 Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183 D+L+ TPGR++D R + + + + LV+DEAD+MLDMGFI ++ I L+ RQT+LF Sbjct: 122 DLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTMLF 181 Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243 SATM + +++ FL+NP R++V+ P E IE V A+ +K LL+ + + +D Sbjct: 182 SATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQS-VHFVAKAAKTDLLLELIDKHRD 240 Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 + I+F K L L +GF +IHGN Q R + +++FK G + ++VA+D Sbjct: 241 --ERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVTILVATD 298 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 +AARGLDIP+V HV+N+D+PN AENY+HRIGRT RAG G A A +++ + I+K Sbjct: 299 VAARGLDIPEVKHVYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEMGELRDIQKA 358 Query: 364 IEKKVDWLNG 373 ++ + G Sbjct: 359 MKADIPVAGG 368 >gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus indolifex HEL-45] gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus indolifex HEL-45] Length = 438 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 165/389 (42%), Positives = 243/389 (62%), Gaps = 15/389 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF +GL K+V + + G PTPIQ + IP + DV G+AQTGTGKTA+F +P+L Sbjct: 3 DFDMMGLPKKLVARLNEMGLKDPTPIQRQAIPQAMNGRDVMGLAQTGTGKTAAFGVPLLA 62 Query: 62 -ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++E +GR R R L+L PTRELA Q+A N Y + + VA+++GG Q K+L Sbjct: 63 QMMELEGRPEPRSVRGLVLAPTRELAQQIAVNLRGYAEGTQIKVAMVVGGQSINTQIKRL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG D+LI TPGR+LD +R + ++ LV+DEAD+MLDMGFI ++ I++L+P RQ Sbjct: 123 ERGVDLLIATPGRLLDLLDRRAVKLDTTTFLVLDEADQMLDMGFIHDLRKISNLIPKERQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237 T+LFSATM + +++ ++L +P RIEV+ P A+ + E F+A ++K LL++ Sbjct: 183 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAK----AEKTELLKE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ + ++F K L +L K GF +IHGN Q R + ++ FK G I Sbjct: 239 LL-AKHKGERALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKGGDIT 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIPDV HV+NF++PN +NY+HRIGRT RAG+ G A A +++ + Sbjct: 298 VLVATDVAARGLDIPDVKHVYNFELPNVPDNYVHRIGRTARAGKDGAAVAFCAPDEMGEL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID 386 AI+K + + +G P E ID Sbjct: 358 KAIQKTMGISIPVASGR------PWEVID 380 >gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21] gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21] Length = 449 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 168/415 (40%), Positives = 240/415 (57%), Gaps = 10/415 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L LS ++ A+ GY +PTPIQ ++IPL L D+ G AQTGTGKTASFVLP L Sbjct: 1 MSFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L R + PR L+L PTRELA QV D YGK + ++GG+P+ Q L Sbjct: 61 ERLLTPSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++DH +R + + +E+LV+DEADRMLDMGF + I P RQ Sbjct: 121 AQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSDDVDRIADAAPAERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLF+ATM D + K+++ L++P R+ V IE T K LLQ L+ Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVT-DDMRHKNRLLQHLV 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S ++ IIF KK+ L L QG + A+HG++ Q +R K ++N + G ++L+ Sbjct: 240 -SDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKVRLL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P AE+Y+HRIGRTGRAG G A + + ++ ++D Sbjct: 299 VATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDR 358 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 IE+ KK+ + PL + + ARK P FD RKK ++ Sbjct: 359 IERFTGKKLPMHVVEGFEPTRPLRRGNSGAPG-ARKGRP------SFDPRKKGFA 406 >gi|209694846|ref|YP_002262774.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] gi|208008797|emb|CAQ78997.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] Length = 434 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 161/370 (43%), Positives = 229/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ GL+P+VV A+ + GY K TPIQ K IPL + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFSSQGLAPEVVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVI 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K A R R LIL PTRELA Q+A N Y K +L V + GG +Q + Sbjct: 61 QRLLDTKKSATRRSARALILAPTRELAEQIAVNIISYTKYTSLKVTAVFGGKKMSSQERA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+L+ TPGR+ +H G + + N+E LV DEADRMLDMGF+ I+NI V Sbjct: 121 LDPGVDILVATPGRLQEHIEEGNVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNSAP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q +LFSAT + ++ K++ + L+ PKRI V+ + TA TI H V +K LL +L Sbjct: 181 QIMLFSATSSAQMNKLASDILRKPKRISVDRENMTATTISH--VVYPVDEERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ N+ L+ G HG+ Q +R + L FKEG ++ Sbjct: 239 I-GRKNWQQVLVFVNYKETANNIVKELKLDGIKAVICHGDKAQSARRRALEEFKEGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 298 MVATDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAISFVSREEELTVV 357 Query: 359 AIEKLIEKKV 368 +E LI++++ Sbjct: 358 QVETLIQQRI 367 >gi|150007803|ref|YP_001302546.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC 8503] gi|256840069|ref|ZP_05545578.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13] gi|298376828|ref|ZP_06986783.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19] gi|149936227|gb|ABR42924.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC 8503] gi|256738999|gb|EEU52324.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13] gi|298266706|gb|EFI08364.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19] Length = 421 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 157/377 (41%), Positives = 238/377 (63%), Gaps = 5/377 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L + A++ GY PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+K + R + LIL PTRELA Q+ ++F YG+ L ++ GG+ + Q + Sbjct: 61 QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG D+LI TPGR+LD +G + ++ +E V+DEADRMLDMGFI I+ I L+P R Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+++++ L P+++EV SST + I+ + + ++K LL+ L Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVY--FVEKAEKINLLKSL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ + +++ +IF K + L K AIHGN Q +R + L+NFK+ T ++ Sbjct: 239 LENPE-LESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAGR G AF+ E++ + Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357 Query: 359 AIEKLIEKKVDWLNGDL 375 I+KLI K+V G + Sbjct: 358 DIQKLIGKEVPIAGGHM 374 >gi|110833595|ref|YP_692454.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2] gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax borkumensis SK2] Length = 459 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 230/370 (62%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL + AV + GY P+PIQ + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MHFSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G AR R L+L PTRELAAQVA++ YGKN LT ++ GG+ Q ++L Sbjct: 61 ERLRTGSPARNNQVRALVLTPTRELAAQVAESVATYGKNLPLTSTVVFGGVKINPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR+LD + + + +++E+L++DEADRMLDMGFI I+ I + +P RQ Sbjct: 121 RGGCDVLVATPGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILAKLPPKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT + E++ +++ + +P ++++ ++T E + +K ALL L+ Sbjct: 181 NLMFSATFSSEIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPV--DKKRKPALLTHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++F K L LE G AIHGN Q +R + L++FK G ++ + Sbjct: 239 QENGWFQV-LVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKSGKVRAL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N D+PN E+Y+HRIGRTGRAG G+A +LV+ ++ + + Sbjct: 298 VATDIAARGLDIEQLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLVSADEFQQLKD 357 Query: 360 IEKLIEKKVD 369 IE+L +++++ Sbjct: 358 IERLTQQQLE 367 >gi|255013488|ref|ZP_05285614.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_7] Length = 421 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 157/377 (41%), Positives = 238/377 (63%), Gaps = 5/377 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L + A++ GY PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+K + R + LIL PTRELA Q+ ++F YG+ L ++ GG+ + Q + Sbjct: 61 QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG D+LI TPGR+LD +G + ++ +E V+DEADRMLDMGFI I+ I L+P R Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+++++ L P+++EV SST + I+ + + ++K LL+ L Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVY--FVEKAEKINLLKSL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ + +++ +IF K + L K AIHGN Q +R + L+NFK+ T ++ Sbjct: 239 LENPE-LESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAGR G AF+ E++ + Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357 Query: 359 AIEKLIEKKVDWLNGDL 375 I+KLI K+V G + Sbjct: 358 DIQKLIGKEVPIAGGHM 374 >gi|197335615|ref|YP_002156614.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] gi|197317105|gb|ACH66552.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] Length = 398 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 161/408 (39%), Positives = 250/408 (61%), Gaps = 18/408 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ + GY PTPIQ K IP+ L ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRARVRMPR--TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL + +VR R LIL PTRELA QV +N ++Y K+ ++T + GG+ ++ Q ++ Sbjct: 61 EILSEDSTKVRAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKDQKQR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G DVL+ TPGR+LD + + + + ++ILV+DEADRMLDMGFI I I +P R Sbjct: 121 LIEGVDVLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q +LFSAT++D+++ +++ + NP I ++ ++++ I+ T KK ALL L Sbjct: 181 QNMLFSATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWL--TTVDKDKKSALLSHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++ +IF K L LEK+ A H Q +R K+L++FKEG +Q Sbjct: 239 IK-ENNWDQALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQY 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+ +AARG+DI ++ V N+D+P A++Y+HRIGRTGRAG G+A + V+K+D K++ Sbjct: 298 LVATGIAARGIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKDDFKNLC 357 Query: 359 AIEK-----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 IE ++ K+++ P +++ I+ N+ K P P+ Sbjct: 358 MIESRLGHLIVRKEIEGF--------APRKEVPISILNYKPKRKPAPK 397 >gi|301310161|ref|ZP_07216100.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3] gi|300831735|gb|EFK62366.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3] Length = 421 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 157/377 (41%), Positives = 238/377 (63%), Gaps = 5/377 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L + A++ GY PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+K + R + LIL PTRELA Q+ ++F YG+ L ++ GG+ + Q + Sbjct: 61 QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG D+LI TPGR+LD +G + ++ +E V+DEADRMLDMGFI I+ I L+P R Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+++++ L P+++EV SST + I+ + + ++K LL+ L Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVY--FVEKAEKINLLKSL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ + +++ +IF K + L K AIHGN Q +R + L+NFK+ T ++ Sbjct: 239 LENPE-LESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAGR G AF+ E++ + Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357 Query: 359 AIEKLIEKKVDWLNGDL 375 I+KLI K+V G + Sbjct: 358 DIQKLIGKEVPVAGGHM 374 >gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium 3519-10] gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium 3519-10] Length = 417 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 155/368 (42%), Positives = 230/368 (62%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F DL L + A+ + GY +PTPIQ K IP +LQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MNFTDLQLIDPIAKALQEEGYTQPTPIQAKAIPSILQGRDLLGTAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R + LIL PTRELA Q+ ++F YG++ L ++ GG+ Q L+ Sbjct: 61 QNLTEKNIRNNQIKALILTPTRELAIQIEESFNAYGRHLRLRNLVVFGGVKQSGQEAALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD ++G + + N+EI V+DEADRMLDMGF+ ++ I L+P RQT Sbjct: 121 KGVDILVATPGRLLDFISQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPPKRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSAT DE+ K++ + L NP ++EV S+TA+TI+ + + K LL +L Sbjct: 181 LFFSATFPDEISKLANSMLTNPVKVEVAPVSATADTIKQKVY--FVEKENKLELLTHILM 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + ++F K + L+ S AIHGN Q R L+NFK G +++V Sbjct: 239 N-DISDSVLVFSRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALNNFKSGKTRILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ +V NF++ + +E Y+HRIGRTGRAG G + + V D+ ++ + Sbjct: 298 ATDIAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGADGSSISFVDGLDLVNLKST 357 Query: 361 EKLIEKKV 368 EKLI KK+ Sbjct: 358 EKLIGKKI 365 >gi|188534378|ref|YP_001908175.1| ATP-dependent RNA helicase RhlE [Erwinia tasmaniensis Et1/99] gi|188029420|emb|CAO97297.1| Putative ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99] Length = 468 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 161/375 (42%), Positives = 240/375 (64%), Gaps = 14/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K ++ ++ GG+ Sbjct: 61 QLLSSHNPHPKGR---RPVRALILTPTRELAAQIGENVQDYSKYLDMRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G DVL+ TPGR+LD ++ L ++ +EILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNALDLSQVEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233 P RQ LLFSAT +DE++ ++E L NP+++EV ++ +E + +H + K+ Sbjct: 178 PAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD----KKRKR 233 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L LL + + ++F K +L L K G + AIHGN Q +R + LS+FKE Sbjct: 234 ELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKE 293 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I+++VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 294 GKIRVLVATDIAARGIDIEELPHVVNYELPNVSEDYVHRIGRTGRAAAVGEALSLVCVDE 353 Query: 354 IKHIDAIEKLIEKKV 368 K + IE+L+++++ Sbjct: 354 HKLLRDIERLLKREI 368 >gi|261822185|ref|YP_003260291.1| ATP-dependent RNA helicase RhlE [Pectobacterium wasabiae WPP163] gi|261606198|gb|ACX88684.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae WPP163] Length = 476 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 164/377 (43%), Positives = 238/377 (63%), Gaps = 16/377 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY PTP+Q + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KG+ R R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLTSREAQHKGKGR-RPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINP 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 120 QMMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKL 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231 P RQ LLFSAT +DE++ ++ L NP +EV NTPS H + +K Sbjct: 180 PAKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKRRK 234 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL QL+ ++ + ++F K +L LEK G + AIHGN Q +R + L+NF Sbjct: 235 RELLSQLI-GENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANF 293 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K+G+I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA G+A +LV Sbjct: 294 KDGSIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCV 353 Query: 352 EDIKHIDAIEKLIEKKV 368 ++ K + IE+L+++++ Sbjct: 354 DEHKLLRDIERLLKREI 370 >gi|59712397|ref|YP_205173.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] gi|59480498|gb|AAW86285.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] Length = 398 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 161/408 (39%), Positives = 250/408 (61%), Gaps = 18/408 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ + GY PTPIQ K IP+ L ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRARVRMPR--TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL + +VR R LIL PTRELA QV +N ++Y K+ ++T + GG+ ++ Q ++ Sbjct: 61 EILSEDPTKVRAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKEQKQR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G DVL+ TPGR+LD + + + + ++ILV+DEADRMLDMGFI I I +P R Sbjct: 121 LIEGVDVLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q +LFSAT++D+++ +++ + NP I ++ ++++ I+ T KK ALL L Sbjct: 181 QNMLFSATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWL--TTVDKDKKSALLSHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++ +IF K L LEK+ A H Q +R K+L++FKEG +Q Sbjct: 239 IK-ENNWNQALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQY 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+ +AARG+DI ++ V N+D+P A++Y+HRIGRTGRAG G+A + V+K+D K++ Sbjct: 298 LVATGIAARGIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKDDFKNLC 357 Query: 359 AIEK-----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 IE ++ K+++ P +++ I+ N+ K P P+ Sbjct: 358 MIESRLGHLIVRKEIEGF--------APRKEVPISILNYKPKRKPTPK 397 >gi|308186129|ref|YP_003930260.1| ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1] gi|308056639|gb|ADO08811.1| Putative ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1] Length = 456 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 164/374 (43%), Positives = 234/374 (62%), Gaps = 6/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRA--RVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L R R P R LIL PTRELAAQV +N Y K +L ++ GG+ Q Sbjct: 61 QKLSATATPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSLVVFGGVSINPQMV 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD + + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLAQQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++E L NP+ IEV ++ +E + + +K LL Q Sbjct: 181 RQNLLFSATFSDEIKGLAEKLLTNPEMIEVARRNTASEQVAQQV--HFVDKKRKRELLSQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + + ++F K +L L K G + AIHGN Q +R + L++FK G I+ Sbjct: 239 LI-GEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGGIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA G A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLL 357 Query: 358 DAIEKLIEKKVDWL 371 IE+L+++++ L Sbjct: 358 RDIERLLKREIPRL 371 >gi|90410084|ref|ZP_01218101.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK] gi|90329437|gb|EAS45694.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK] Length = 420 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 157/362 (43%), Positives = 233/362 (64%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ AV + GY PTPIQ K IP++L ++ AQTGTGKTASFVLP+L Sbjct: 1 MSFSNLGLSDPILKAVAELGYETPTPIQEKAIPVILTGKNLIAAAQTGTGKTASFVLPLL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + R + R LIL PTRELA QV N +Y K+ +LT + GG+ ++ Q ++L Sbjct: 61 EKFSDMPPIRAKRIRALILVPTRELAVQVDANITQYSKHLSLTSLAMYGGVDYKDQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + L + +E+LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IDGVDILVATPGRLLDMYTQRALHFDELEVLVLDEADRMLDMGFIEDINKILERLPKERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++D+++ +++ ++ P I V+ ++T I+ + KK ALL ++ Sbjct: 181 NLLFSATLSDQVRVLAKTAVERPVEISVSPENTTTPKIDQWLITV--DKDKKSALLSHMI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ K +IF K L LEK+G AIHG Q R K+L++FK G + L+ Sbjct: 239 K-ENEWKQALIFIQTKHGAAKLVGQLEKRGIVAEAIHGGRSQAVREKLLNDFKSGELGLL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI D+ V N+D+P++A++Y+HRIGRTGRAG G+A + V+++D +H+ A Sbjct: 298 VATGIAARGIDIDDLTRVINYDLPDQADDYVHRIGRTGRAGATGEAISFVSRDDFRHLCA 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|262381688|ref|ZP_06074826.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B] gi|262296865|gb|EEY84795.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B] Length = 421 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 157/377 (41%), Positives = 238/377 (63%), Gaps = 5/377 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L + A++ GY PTPIQ + IP+V Q +D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPII 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+K + R + LIL PTRELA Q+ ++F YG+ L ++ GG+ + Q + Sbjct: 61 QRLYLQKKKGYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG D+LI TPGR+LD +G + ++ +E V+DEADRMLDMGFI I+ I L+P R Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+++++ L P+++EV SST + I+ + + ++K LL+ L Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVY--FVEKAEKINLLKSL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ + +++ +IF K + L K AIHGN Q +R + L+NFK+ T ++ Sbjct: 239 LENPE-LESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAGR G AF+ E++ + Sbjct: 298 LIATDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLK 357 Query: 359 AIEKLIEKKVDWLNGDL 375 I+KLI K+V G + Sbjct: 358 DIQKLIGKEVPVAGGHM 374 >gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253] Length = 453 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206] gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299] gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206] gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299] Length = 453 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|187734531|ref|YP_001876643.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187424583|gb|ACD03862.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 423 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 162/419 (38%), Positives = 249/419 (59%), Gaps = 8/419 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ + + Y PTPIQ IPL+LQ D+ G+AQTGTGKTA+F LP++ Sbjct: 6 FRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALPLIQQ 65 Query: 63 LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + G+ R R LIL PTRELAAQ+ +N Y + +L+ A++ GG+ + +Q K+L Sbjct: 66 LSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVGYASQFKELA 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR++DH R + ++ +E L++DEAD MLDMGF P ++ I S +P R T Sbjct: 126 GGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIPRKRHT 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +FSATM D ++++++ LQ P+ + V+ PSSTA+ +E F+ S+K L +LL+ Sbjct: 186 QMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQ-FLCMVGSQSEKRLLTLELLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ +IF + L L + + AIHG+ Q R ++L F+ G ++V Sbjct: 245 QQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTPVLV 304 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV V N+D+P E Y+HRIGRT RAG G+A L + E+I+ + Sbjct: 305 ATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRKARNV 364 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQKS 418 KL+ + L SS + P E + + R ++P+ +K + R +K Y S Sbjct: 365 HKLLGR---LLPVHASSASVPAELRAVPEARRKR-SSPMQEKRSAPRREPRKGYGRNGS 419 >gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073] gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536] gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11] gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972] gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1] gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1] gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1] gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1] gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101] gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605] gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073] gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536] gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11] gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82] gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972] gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1] gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1] gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1] gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1] gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101] gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972] gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG 857C] gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1] gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327] gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2] gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86] gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605] Length = 453 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|325983695|ref|YP_004296097.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp. AL212] gi|325533214|gb|ADZ27935.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212] Length = 445 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 167/373 (44%), Positives = 232/373 (62%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA GLS +++ AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFATFGLSDEIIRAVTERGYTVPTPIQKQAIPAVLTGADLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L KG + R P R LIL PTRELAAQV ++ YGK L+ ++IGG+ Q Sbjct: 61 HRLSDKSVKGPSTGRPPIRALILVPTRELAAQVEESVRDYGKYLKLSSMMMIGGVNINPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L+ D+L+ TPGR+LDH + L ++ IEILV+DEADRMLDMGFI I+ I +L+P Sbjct: 121 ITRLKSRVDILVATPGRLLDHVQQKTLSLSQIEILVLDEADRMLDMGFIRDIKKILALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT +DE++ ++++ L P IE ++ A+ + H V +K LL Sbjct: 181 KQRQNLLFSATFSDEIRALADSLLNQPALIEAARRNAIADKVTH--VVHPVDRERKRHLL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ Q ++F K L L G AIHGN Q +R L+ FK G+ Sbjct: 239 AHLIK-QHGWSQVLVFTRTKHGANKLAEFLTADGIPALAIHGNKSQTARTTALAKFKTGS 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+DI ++ HV NF++P E+Y+HRIGRTGRAG G A +LV +++K Sbjct: 298 LQVLVATDIAARGIDINELPHVVNFELPQVPEDYVHRIGRTGRAGAEGDAVSLVCVDELK 357 Query: 356 HIDAIEKLIEKKV 368 + AIEKLI+ ++ Sbjct: 358 LLTAIEKLIKHEL 370 >gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5] gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5] Length = 454 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957] gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957] Length = 389 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 156/369 (42%), Positives = 226/369 (61%), Gaps = 5/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DFA LGL+ ++ A+ GY PTPIQ + IP VL D+ GIAQTGTGKTA+F LP+L Sbjct: 3 DFAALGLAEPLLRALTQEGYTTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPVLH 62 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L K A R LIL PTRELA+Q+ DN YG+ L+ A++ GG+ Q + L Sbjct: 63 HLADRKAPAPRGGCRALILSPTRELASQIHDNIRAYGRFLGLSSAVIFGGVGARPQVEAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DVL+ TPGR+ DH G + +E+LV+DEAD+MLD GF P ++ ++S++ RQ Sbjct: 123 RRGVDVLVATPGRLQDHVQTGAAKLQGVEVLVLDEADQMLDRGFWPAVKRLSSVMSKNRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSATM E+ K++ L++P ++ V ++TAE IE + + S+K LL ++L Sbjct: 183 TLFFSATMPAEIAKIAAEMLKDPAKVSVTPVATTAERIEQKLI--HIDASQKRVLLSEML 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q + ++F K + L G + AIHG+ Q R + L+ F+ G ++ Sbjct: 241 R-QPGIGRALVFARTKHGADRVTKHLNADGIAAHAIHGDRSQGQRERALAEFRTGRAPIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RG+D+ V HVF FD+P+ E Y+HRIGRT RAG G+A A +++ + A Sbjct: 300 VATDIASRGIDVDGVTHVFQFDLPDTPEAYVHRIGRTARAGASGEAIAFCAPDEVAKLKA 359 Query: 360 IEKLIEKKV 368 +EKLI K+ Sbjct: 360 VEKLIAMKI 368 >gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 430 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 164/408 (40%), Positives = 247/408 (60%), Gaps = 15/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P+VV A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LPM+ Sbjct: 1 MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ R+ R R LIL PTRELA Q+ADN + Y K NL+VA + GG +Q Sbjct: 61 QQLLDSNRSASRKTARALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVAA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H +G + + ++E LV DEADR+LDMGFI ++ I V Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++++ L+ PKRIEV ++TA+T+ H +K LL +L Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPV--DQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + K ++F N K+ + L+ G HG+ Q +R + L FK G ++ Sbjct: 239 I-GRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +++ + Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398 +E LI++++ + +L+ P +EK+ ++ R+NNP Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLHSKPAFKNRQGRRNNP 403 >gi|227113019|ref|ZP_03826675.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 471 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 163/377 (43%), Positives = 239/377 (63%), Gaps = 16/377 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY PTP+Q + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KG+ R R R LIL PTRELAAQ+ +N + Y K +L ++ GG+ Sbjct: 61 QLLTSREAQHKGKGR-RPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINP 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + + Sbjct: 120 QMMKLRGGVDILVATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKL 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231 P RQ LLFSAT +DE++ ++ L NP +EV NTPS H + +K Sbjct: 180 PAKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKRRK 234 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL QL+ ++ + ++F K +L LEK G + AIHGN Q +R + L+NF Sbjct: 235 RELLSQLI-GENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANF 293 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K+G+I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA G+A +LV Sbjct: 294 KDGSIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCV 353 Query: 352 EDIKHIDAIEKLIEKKV 368 ++ K + IE+L+++++ Sbjct: 354 DEHKLLRDIERLLKREI 370 >gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] Length = 488 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 164/375 (43%), Positives = 236/375 (62%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K LL Sbjct: 181 KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR---HGKAFTLVAKED 353 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGR GR +G+A +LV ++ Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRTGRAGANGEAVSLVCVDE 357 Query: 354 IKHIDAIEKLIEKKV 368 + + IE+LI++++ Sbjct: 358 KQLLRDIERLIKREI 372 >gi|309776780|ref|ZP_07671754.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium 3_1_53] gi|308915528|gb|EFP61294.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium 3_1_53] Length = 438 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 164/431 (38%), Positives = 254/431 (58%), Gaps = 23/431 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L ++ ++ A+ + GY+ PTPIQ + IP LQ D+ G AQTGTGKTA+F +P + Sbjct: 1 MKFQTLNITEPILKAINEQGYLTPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L R R R+LI+ PTRELA Q+ +N Y K+ + A++ GG+P + Q + L+ Sbjct: 61 QLL--NRHEKRYIRSLIVTPTRELAIQIQENICAYAKHTGIRSAVIFGGVPQKPQERILK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR+ D +G + + IEI ++DEADRMLDMGF+P ++ + + +P +QT Sbjct: 119 AGVDILVATPGRLNDLIQQGIVDIGRIEIFILDEADRMLDMGFLPDVKRLIAKLPKKKQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++ ++E+ L+NP IEV ++T E I+ Y L L Sbjct: 179 LFFSATMPKEIRALAESLLKNPISIEVTPAATTVEKIDQTL---YYVDKANKKRLLLKLL 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ ++N ++F K N L L + G + IHGN Q +R + L FKEG +++V Sbjct: 236 NKNRVQNALVFTRTKSNANRLAKYLNEAGVAAGVIHGNKSQNARQQALLQFKEGKSRVLV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HVFN+D+PN AE Y+HRIGRTGRAGR G A + ++I +I Sbjct: 296 ATDIAARGIDVQELSHVFNYDIPNEAEVYVHRIGRTGRAGRQGTAIAFSDINEAEYIKSI 355 Query: 361 EKLI--------EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK-- 410 EKLI +++ N ++S+ P Q + +++ P S G ++R+ Sbjct: 356 EKLIRMRIPVQEDREFPMRNMEVSAPTP--------QQHKRKRSTPSKSASNGNEKRRAA 407 Query: 411 KNYSSQKSHIP 421 +SQK P Sbjct: 408 SAKASQKPAAP 418 >gi|260854088|ref|YP_003227979.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368] gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368] gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14] Length = 454 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A] gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22] gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171] gi|256021133|ref|ZP_05434998.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9] gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009] gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088] gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7] gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591] gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9] gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli E24377A] gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22] gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171] gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009] gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088] gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7] gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B] gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010] gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1357] gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120] gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591] gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9] Length = 454 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|304409413|ref|ZP_07391033.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307303771|ref|ZP_07583524.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304351931|gb|EFM16329.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306912669|gb|EFN43092.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 411 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 176/410 (42%), Positives = 246/410 (60%), Gaps = 20/410 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+ +V + GY PTPIQ++ IP +L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSVLSLNSTLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60 Query: 61 ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + L++ A VR R L+L PTRELA QV +F KY K ++ V + GG+ +A Sbjct: 61 HHLLALSPLQELTA-VRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDA 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q G DVLI TPGR+LDH +G L + + +LV DEADRMLDMGF+ IQ + V Sbjct: 120 QVAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQV 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQTLLFSAT+ + +S+ L++PK IEV ++TA IE A A +K L Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDA--DRKTEL 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L++S++ +IF K+ V L L K A HG++ Q +R K+L FK+G Sbjct: 238 VSHLVRSKN-WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 IQ++VA+D+AARGLDI ++ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED Sbjct: 297 KIQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDA 356 Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 ++ +E +++K++ WL G P K+D R+N QK Sbjct: 357 LLLEEVEVVLDKRLPQQWLPG----FEPDFNKMD----TEPRRNGKAAQK 398 >gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814] gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814] Length = 769 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 158/371 (42%), Positives = 234/371 (63%), Gaps = 11/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L+ V+ A+ GY PTPIQ + IPLV++ D+ GIAQTGTGKTA+F LP+L Sbjct: 4 FSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPLLHH 63 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K G VR L++ PTRELA+Q+A+ F KYG+ +L V + GG+P Q + Sbjct: 64 LCKLPDMPGPGAVR---CLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RGADVL+ TPGR++D +G + ++ +E LV+DEAD+MLD+GFI ++ I + VP Sbjct: 121 DLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL FSATM + ++ FL NPK++ + S+TAE + ++ ++K LL Sbjct: 181 RQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTM--SHVNQAQKGPLLLV 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LQ + ++ ++F K + L G AIHGN Q R + L+ F+ G + Sbjct: 239 NLQDE-SIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSK 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+P V HVFN+++PN E Y+HRIGRT RAGR GKA + V++++ K++ Sbjct: 298 VLVATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYL 357 Query: 358 DAIEKLIEKKV 368 I++ I K+ Sbjct: 358 LDIQRQIRMKI 368 >gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718] gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718] Length = 454 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1] gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1] Length = 446 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1] gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1] Length = 433 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase domain-containing protein [Kangiella koreensis DSM 16069] gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM 16069] Length = 434 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 226/370 (61%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L ++ A+ +GY P+PIQ K IPL+L DV AQTGTGKTA F LP+L Sbjct: 1 MPFSKLDLIQPLLDALHKSGYKTPSPIQQKVIPLILNGQDVMAAAQTGTGKTAGFSLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R R LIL PTRELA QV + +KY N +L ++ GG+ Q KL Sbjct: 61 QRLSEGKRPSANSARCLILTPTRELAEQVHQSVQKYAANLHLNSIVVYGGVKINPQMLKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DVL+ TPGR+LD + + N++E LV+DEADRMLDMGF+P I+ I +P RQ Sbjct: 121 RRGTDVLVATPGRLLDLMEQNAVRFNDLEFLVLDEADRMLDMGFLPSIKRIIGKLPKKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT ++ ++ +S+ FL NP +E ++TA T++ +K ALL L+ Sbjct: 181 TLLFSATFSESIKAISQQFLTNPSLVETEQTNTTAATVKQWIHPV--DKKQKPALLSYLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++F ++ L LEK+G AIHG Q +R + LS FK G + ++ Sbjct: 239 -GHHRWDQLLVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKSGKVTVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N+D+PN AE+Y+HRIGRTGRAG G A +LV+ +++ + A Sbjct: 298 VATDVAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGTAISLVSADEVDDLRA 357 Query: 360 IEKLIEKKVD 369 I+ LI K ++ Sbjct: 358 IQDLIRKPLE 367 >gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1] gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1] Length = 453 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227] Length = 453 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|226228176|ref|YP_002762282.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27] gi|226091367|dbj|BAH39812.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27] Length = 374 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/369 (43%), Positives = 227/369 (61%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGL+ ++ A+ DAGY +PTPIQ + IPL L D+ G+AQTGTGKTASF LP++ Sbjct: 1 MTFADLGLARPLLDALHDAGYERPTPIQREAIPLALLGRDLIGLAQTGTGKTASFTLPVV 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L G R R+ L+L PTREL QV ++ KY + V + GG+ +E Q K L Sbjct: 61 HRLLGGPRRTRV---LVLTPTRELCLQVEESVRKYSSRSPVDVIPVYGGVGYEPQEKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR+LDH + + +E LV+DEADRMLDMGF P I I +P RQT Sbjct: 118 RGVDVVVATPGRLLDHLEKRNVDFTYLETLVLDEADRMLDMGFAPQINRIVDQIPRYRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLL 239 LLFSATM E++ + +L+ P ++V SS A T+ H A Y +K LL LL Sbjct: 178 LLFSATMPPEVEALGRKYLRKPVVVQVGRRSSAATTVTH---AVYPVPRHRKNELLVHLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++ ++F K + L + A+H + QR R++ L +FK G ++++ Sbjct: 235 TNSD-HESVLVFTRTKSGADRVVSDLAQAKIHAGAMHADKSQRERIQALEDFKSGKLRVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A RGLDI + HV NFDVP + E+Y+HRIGRTGRA G A+T ++ E+I + Sbjct: 294 VATDIAQRGLDISGITHVINFDVPQQPEDYVHRIGRTGRAASTGDAYTFMSAEEIGMVRT 353 Query: 360 IEKLIEKKV 368 IE+ I +++ Sbjct: 354 IERTIGQEI 362 >gi|91228785|ref|ZP_01262694.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] gi|91187660|gb|EAS73983.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] Length = 430 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 164/408 (40%), Positives = 247/408 (60%), Gaps = 15/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P+VV A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LPM+ Sbjct: 1 MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMI 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ R+ R R LIL PTRELA Q+ADN + Y K NL+VA + GG +Q Sbjct: 61 QQLLDSNRSASRKTARALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVTA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H +G + + ++E LV DEADR+LDMGFI ++ I V Sbjct: 121 LENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++++ L+ PKRIEV ++TA+T+ H +K LL +L Sbjct: 181 QIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPV--DQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + K ++F N K+ + L+ G HG+ Q +R + L FK G ++ Sbjct: 239 I-GRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +++ + Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVV 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398 +E LI++++ + +L+ P +EK+ ++ R+NNP Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLHSKPAFKNRQGRRNNP 403 >gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114] gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114] Length = 431 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 172/429 (40%), Positives = 254/429 (59%), Gaps = 12/429 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P++V A+ + GY K TPIQ K IPL + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFSSQGFAPEIVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVI 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K A R R LIL PTRELA Q+A N Y K +LTV + GG +Q + Sbjct: 61 QQLLDSKKSATRRTARALILAPTRELAEQIAVNIADYIKYTSLTVTSVFGGKKMSSQERA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H + + N+E LV DEADRMLDMGF+ I+NI V + Sbjct: 121 LEPGVDILVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q +LFSAT + ++ K++ + L+ PKRI V+ ++TA TI H V +K LL +L Sbjct: 181 QIMLFSATSSAQMNKLASDILRKPKRISVDPENTTASTIAH--VVYPVDEERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ + L+ G HG+ Q +R + L FKEG ++ Sbjct: 239 I-GRKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 298 MVATDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAVSFVSREEELTVV 357 Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDR-RKK 411 +E LI+ ++V+ + + + ++K++ ++ R NNP +S+ R R K Sbjct: 358 QVETLIQQRIRRVEQPGYEPKNRDAYIDKVNTKSAFKNRKGRTNNPNEDQSSAERRMRLK 417 Query: 412 NYSSQKSHI 420 N K+ I Sbjct: 418 NVIQNKARI 426 >gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1] gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1] Length = 452 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15] Length = 453 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|255038837|ref|YP_003089458.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951593|gb|ACT96293.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM 18053] Length = 383 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 160/378 (42%), Positives = 231/378 (61%), Gaps = 12/378 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L + A+ + GY PTPIQ K IP++L+ D+ G AQTGTGKTA+F +PML Sbjct: 1 MTFQDLKLIEPIKKALQEEGYTTPTPIQSKAIPVILETKDLLGCAQTGTGKTAAFAIPML 60 Query: 61 TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L + R+R+R LIL PTRELA Q+ ++F YG+ + ++ GG+ + Sbjct: 61 QLLHENPVGKFERSRIR---ALILTPTRELAIQIGESFAAYGRYTRVRHTVIFGGVGQKP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L +G DVLI TPGR+LD N+G + +N +E V+DEADRMLDMGF+ ++ + L+ Sbjct: 118 QTDALAKGVDVLIATPGRLLDLINQGFIKLNQLEFFVLDEADRMLDMGFVHDVKKVIKLL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ+L FSATM + ++ L+NP ++EV SSTA+TI + S K +L Sbjct: 178 PGKRQSLFFSATMPPAIVTLAGTILRNPVKVEVTPVSSTADTIRQSVF--FVDKSNKNSL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L +LQ + ++ ++F K + L K G + AIHGN Q +R L NFK Sbjct: 236 LLHILQDE-SIATALVFTRTKHGADKVVKVLRKAGVTSEAIHGNKSQTARQNALKNFKNQ 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 T +++VA+D+AARG+D+ D+ HV N+++PN E Y+HRIGRTGRAG G A + KE+ Sbjct: 295 TTRVLVATDIAARGIDVDDLTHVINYEIPNIPETYVHRIGRTGRAGAKGIALSFCDKEEK 354 Query: 355 KHIDAIEKLIEKKVDWLN 372 ++ I KLI K + +N Sbjct: 355 PYLKDIHKLIAKNIPVVN 372 >gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89] gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88] gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a] gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA] gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89] gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88] gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a] gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA] gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli IHE3034] gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146] gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263] Length = 453 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509] Length = 454 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39] gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39] Length = 453 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3] Length = 446 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|120598117|ref|YP_962691.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|146293812|ref|YP_001184236.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|120558210|gb|ABM24137.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145565502|gb|ABP76437.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 413 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 172/406 (42%), Positives = 247/406 (60%), Gaps = 14/406 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+ +V + + GY PTPIQ + IP++L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSSLSLNTTLVNTITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPIL 60 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L E+ RV+ + L+L PTRELA QV +F KY KN ++ + + GG+ +AQ Sbjct: 61 HLLMAKNVEQKAERVKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + G DVLI TPGR+LDH +G L +N + LV DEADRMLDMGF+ I + VP Sbjct: 121 VDVFKTGIDVLIATPGRLLDHLRQGVLNLNQLSTLVFDEADRMLDMGFMDEINAVLKQVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT+ D + ++S++ L+ PK IEV ++TA +E A + +K + Sbjct: 181 KDRQTLLFSATLDDAIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAIDS--DRKTEFV 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++S + +IF K+ V L L K A HG++ Q +R K+L FK G Sbjct: 239 SHLIRS-NYWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGN 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 IQ++VA+D+AARGLDI ++ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDTL 357 Query: 356 HIDAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395 ++ +E +++K++ W G D + + P P AQ A+K Sbjct: 358 LLEEVEVVLDKRLPQQWYPGFEPDFNKMEPEPRRNGKAAQKQRAKK 403 >gi|322420867|ref|YP_004200090.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp. M18] gi|320127254|gb|ADW14814.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18] Length = 467 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 163/418 (38%), Positives = 243/418 (58%), Gaps = 25/418 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF L PKV V GY+ PTPIQ++ IP V+ DV G+AQTGTGKTA+F LP+L Sbjct: 1 MDFKQFNLHPKVQAGVEAVGYLTPTPIQLQAIPPVMAGQDVLGLAQTGTGKTAAFGLPVL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++E GR +VR L+L PTRELA Q+ ++ + L + GG+ Q KKL Sbjct: 61 HRLVEGGRGQVR---ALVLAPTRELAEQINESLNALAQQTRLKSITVYGGVNINTQIKKL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D+++ PGR+LDH ++G + ++ +E+LV+DEAD+M DMGF+P ++ I +P RQ Sbjct: 118 KEGTDIVVACPGRLLDHISQGTVNLSKVEVLVLDEADQMFDMGFLPDVRKILRALPGKRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM D++++++ L P ++V+ ++ A T+ H K LL +LL Sbjct: 178 NLMFSATMPDDIRRLAHEILCRPVTVQVSR-TAPAATVSHALYPVGQHL--KTPLLFELL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + DT ++ +IF K + LEK G+ ++ GN+ Q R L F++GT Q+M Sbjct: 235 KHTDT-ESVLIFTKTKHRAKRVGEQLEKSGYKATSLQGNLSQNRRQAALDGFRDGTYQIM 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+P+ E Y HRIGRTGRA + G AFT+V ED + + Sbjct: 294 VATDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTGEDEAMVRS 353 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 IE+++ K++ LE D A P PQK F R + +K Sbjct: 354 IERVLGAKIERRR---------LEGFDYAV--------PAPQKDAEFARAPREPQRRK 394 >gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str. E2348/69] gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75] gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69] gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75] Length = 453 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QYLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|332637958|ref|ZP_08416821.1| putative ATP-dependent RNA helicase [Weissella cibaria KACC 11862] Length = 524 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 234/368 (63%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ GYV+ TPIQ +TIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLSQDLLTAIEKHGYVEATPIQEQTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ +V+ L++ PTRELA Q D K G++ + V + GG Q L Sbjct: 61 NMIDTDSNQVQ---ALVVSPTRELAIQTQDELFKLGRDKRVKVQAVFGGADIRRQINGLS 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR++DH NRG + ++N++ LV+DEAD ML+MGF+ I++I VP RQT Sbjct: 118 HGAHIVVGTPGRLIDHINRGTINLSNVKTLVLDEADEMLNMGFLEDIESILKAVPDQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+ P+ I++ T + +E +V + +K L +L Sbjct: 178 LLFSATMPPAIKRIGVQFMTEPEHIQIAAKELTTDLVEQYYV--RVRDFEKFDTLTHILD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q K I+F K+ V L LE +GF+ IHG++ Q+ R ++L FK G I+++V Sbjct: 236 VQQP-KLAIMFGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRSQVLKQFKNGEIKILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V +V+NFD+P +E+Y+HRIGRTGRAG HG + T ++ ++ ++ I Sbjct: 295 ATDVAARGLDVSGVDYVYNFDIPQDSESYVHRIGRTGRAGAHGTSVTFISNAEMDYLKDI 354 Query: 361 EKLIEKKV 368 EKL +K++ Sbjct: 355 EKLTKKRM 362 >gi|290474026|ref|YP_003466900.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Xenorhabdus bovienii SS-2004] gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Xenorhabdus bovienii SS-2004] Length = 459 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 170/428 (39%), Positives = 262/428 (61%), Gaps = 13/428 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LGL ++ AV + GYV+PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MNFESLGLKADILRAVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL 60 Query: 61 TILEK--GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + +A+ R P R LIL PTRELAAQV +N Y K L ++ GG+ Q Sbjct: 61 QLLSESPAQAKGRRPVRALILTPTRELAAQVGENVCNYSKYLRLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++++EIL++DEADRMLDMGFI I+ + S +P Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRVLSKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +D+++ ++ L++P IEV +S +E I+ + +K LL Sbjct: 181 RQNLLFSATFSDDIKSLANKLLRDPVSIEVARRNSASEQIDQAV--HFVDKKRKGELLSY 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ +Q+ + ++F K L L + G + AIHGN Q +R + L++FK G I+ Sbjct: 239 MIGNQN-WQQVLVFTRTKHGANRLAEQLSQDGVTAAAIHGNKSQGARTRALADFKSGRIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI + HV NF++PN AE+Y+HRIGRTGRA G+A +LV ++ K + Sbjct: 298 ALVATDIAARGLDIDQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCVDEHKLL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-------KNNPIPQKSTGFDRRK 410 IE+L+++++ + +P ++ I +++R + +P Q S+ +R Sbjct: 358 HDIERLLKREIPRIAISGYDPDPSIKAEPILNGSNSRGSQRGNGRQSPSNQGSSKPNRSN 417 Query: 411 KNYSSQKS 418 ++ S+Q S Sbjct: 418 QSRSNQGS 425 >gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 EDL933] gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. Sakai] gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4113] gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4401] gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4501] gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4486] gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4196] gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4076] gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC869] gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC508] gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4024] gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4206] gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4045] gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4042] gi|209396359|ref|YP_002269466.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4115] gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. TW14588] gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. TW14359] gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000] gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966] gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. CB9615] gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185] gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933] gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai] gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4196] gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4113] gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4076] gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4401] gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4486] gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4501] gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC869] gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC508] gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4206] gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4045] gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4042] gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4115] gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli] gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli] gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli] gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli] gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli] gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. TW14588] gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359] gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. CB9615] gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185] gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC1212] gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. G5101] gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. 493-89] gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H 2687] gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA 5905] gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. LSU-61] gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. 1125] gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. 1044] Length = 455 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|89107648|ref|AP_001428.1| RNA helicase [Escherichia coli str. K-12 substr. W3110] gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739] gi|170080456|ref|YP_001729776.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638] gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A] gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae 1012] gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1] gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11] gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1] gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989] gi|238900056|ref|YP_002925852.1| RNA helicase [Escherichia coli BW2952] gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606] gi|256023607|ref|ZP_05437472.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 4_1_40B] gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50] gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1] gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1] gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1] gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1] gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1] gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1] gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1] gi|307137421|ref|ZP_07496777.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736] gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7] gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70] gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736] gi|548730|sp|P25888|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase rhlE gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. W3110] gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110] gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739] gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638] gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A] gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae 1012] gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1] gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11] gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989] gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1] gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952] gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)] gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606] gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)] gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1] gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1] gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1] gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1] gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1] gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1] gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1] gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1] gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7] gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407] gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70] gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W] gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1] gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1] gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905] gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68] gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11] gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482] gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489] gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007] gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736] gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae 155-74] gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88] Length = 454 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1] gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1] Length = 438 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227] gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227] Length = 454 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E LQNP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLQNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272] gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227] Length = 454 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49] gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49] Length = 419 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 159/373 (42%), Positives = 235/373 (63%), Gaps = 4/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGLS ++ A+ GY P+PIQ K IP +L+ DV AQTGTGKTA F LPML Sbjct: 1 MTFKDLGLSDPLLKAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPML 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I+ K R R + LI+ PTRELAAQ+ + Y ++ ++ GG+ Q + L Sbjct: 61 HIITKQPFQRHRPVKALIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G D+L+ TPGR+LD ++G M +E LV+DEADRMLDMGF+ I I +++P RQ Sbjct: 121 KQGTDILVATPGRLLDLHSQGVFNMKKVEFLVLDEADRMLDMGFVRDINKILAILPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++K++++FL NP +E +STAE ++ T S K L+ +L+ Sbjct: 181 NLLFSATFSKEIKKLAQSFLTNPVLVEAQRENSTAEKVKQTIYKT--NKSAKTNLVIKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IF K L L K AIHGN Q +R K L+ FK+G+I+++ Sbjct: 239 -TEGNWEQVLIFTRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDGSIRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP + HV N+++PN E+Y+HRIGRT RAG G A ++V+ ++ +++ Sbjct: 298 VATDIAARGLDIPLLPHVINYELPNIPEDYVHRIGRTARAGASGDAISIVSVDEFEYVKG 357 Query: 360 IEKLIEKKVDWLN 372 IEKL+ +K++ + Sbjct: 358 IEKLLGEKLNSIT 370 >gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase domain-containing protein [Geobacter uraniireducens Rf4] gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens Rf4] Length = 453 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 156/364 (42%), Positives = 226/364 (62%), Gaps = 5/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L LSP ++ A+ GY PTPIQ + IPL L D+ AQTGTGKTA+F LP L Sbjct: 1 MSFETLQLSPSILKAIAVCGYTTPTPIQEQAIPLALAGKDLIASAQTGTGKTAAFTLPAL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + PR L+L PTRELA QV D YGK + ++GG+P+ Q + L Sbjct: 61 QRLSTPSPINGKGPRILVLTPTRELANQVTDAVRNYGKFMRVRSGAILGGMPYREQLQLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++DH RG++ ++ +E+L++DEADRMLDMGF + I + P RQ Sbjct: 121 SQPVDLIVATPGRLIDHLERGRINLSRLELLILDEADRMLDMGFSDDVDKIAAAAPANRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238 TLLF+ATM D + K+++ L++P RIE+ ++ + IE V Q+ K +LQ L Sbjct: 181 TLLFTATMDDVMAKLAQRLLKDPVRIEIAGQKTSHDQIEQRLHVVDNLQH--KNRMLQHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + K IIF K++ L L QG + A+HG++ Q +R K ++N + G ++L Sbjct: 239 IADGNLTK-AIIFSATKRDADMLARELHAQGHAAAALHGDMTQNARNKTITNMRRGKVRL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV NFD+P AE+Y+HRIGRTGRAG G A + V+ DI ++D Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFVSLNDINYLD 357 Query: 359 AIEK 362 IE+ Sbjct: 358 RIER 361 >gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans ORS 2060] Length = 506 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 229/370 (61%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+ ++ A+ + GYV PTPIQ + +P + D+CGIAQTGTGKTA+F LP+L Sbjct: 4 FVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPILHR 63 Query: 63 LEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L R PR L+L PTRELA+Q+AD+F YGK + ++ GG+ Q + Sbjct: 64 LASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQERA 123 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G DVL+ TPGR+LD +R L ++++E LV+DEAD+MLD+GFI ++ I +L+P R Sbjct: 124 LANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLPKAR 183 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM + ++ +L++P ++ V ++TAE +E + + K ALL + Sbjct: 184 QSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVI--HVSTGAKQALLGTI 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + ++ ++F K + LEK G AIHGN Q R + L+ F+ GT ++ Sbjct: 242 LRDE-SIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRV 300 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ V HV NFD+PN E Y+HRIGRT RAG G A + +E+ ++ Sbjct: 301 LVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAYLR 360 Query: 359 AIEKLIEKKV 368 IE+L +KV Sbjct: 361 DIERLTRQKV 370 >gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665] gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665] Length = 731 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 153/374 (40%), Positives = 229/374 (61%), Gaps = 9/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL +V+ AV D GY P+PIQ TIPL+L DV G+AQTGTGKT +F LP L+ Sbjct: 74 FLDLGLDARVLAAVEDLGYTAPSPIQEATIPLLLAGRDVVGLAQTGTGKTGAFALPALSR 133 Query: 63 LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L + R P+ L L PTRELA Q+A+ F+ Y K+ +++V + GG P+ Q Sbjct: 134 LAEASDVNGRANAPQILALAPTRELALQLAEAFDAYAKHLGDVSVLAVYGGSPYGPQLSA 193 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGA V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGF + I + P ++ Sbjct: 194 LRRGAQVVVGTPGRVIDHIERGSLDLSQLQTLVLDEADEMLRMGFAEEVDRILASTPASK 253 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT LFSATM ++++S +L +P+ + V+ S+T+ TI ++ QY K + ++ Sbjct: 254 QTALFSATMPPAIRRISAQYLNSPEEVAVSRQSTTSATIRQRYLQVGHQY--KLEAMTRI 311 Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+++D G+I F + L L + GF AI G+I Q+ R K + + K G + Sbjct: 312 LETED--HEGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKTGRVD 369 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P AE+Y+HRIGRTGRAGR G A + + + Sbjct: 370 ILVATDVAARGLDVERISHVINYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLL 429 Query: 358 DAIEKLIEKKVDWL 371 IE+ ++V+ + Sbjct: 430 KQIERTTRQQVEEM 443 >gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1] Length = 438 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197] gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197] Length = 454 Score = 305 bits (781), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3] Length = 442 Score = 305 bits (781), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58] gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58] Length = 715 Score = 305 bits (781), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 154/374 (41%), Positives = 231/374 (61%), Gaps = 9/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL +V+ AV + GY +P+PIQ TIPL+L DV G+AQTGTGKT +F LP L+ Sbjct: 50 FLDLGLDARVLAAVEELGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSR 109 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 L + R P+ L+L PTRELA QVAD F+ Y K+ + ++V + GG P+ Q Sbjct: 110 LAETTDVNGRADTPQVLVLAPTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAG 169 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGA V++ TPGR++DH RG L +++++ LV+DEAD ML MGF + I + P T+ Sbjct: 170 LRRGAQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTK 229 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT LFSATM ++++S +L P+ + V S+T+ TI ++ Q+ K L ++ Sbjct: 230 QTALFSATMPPAIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQW--KFEALSRI 287 Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++++ +G+I F + L L + GF AI G+I Q+ R K + + K G + Sbjct: 288 LETEE--HDGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVD 345 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P AE+Y+HRIGRTGRAGR G A + + + Sbjct: 346 ILVATDVAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLL 405 Query: 358 DAIEKLIEKKVDWL 371 IE+ ++V+ + Sbjct: 406 KQIERTTRQQVEEM 419 >gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H] gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia psychrerythraea 34H] Length = 466 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 232/370 (62%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS ++ AV D GY P+PIQ + IP V+ DV AQTGTGKTA F LP+L Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R LIL PTRELAAQ++++ E YGK NL ++ GG+ Q +L Sbjct: 68 LSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVL+ TPGR+LD +N+ + + +E+ ++DEADRMLDMGFI I+ + + +P RQ Sbjct: 128 RQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++ +++ + NP I V+ +STAE + A +K A+L L+ Sbjct: 188 NLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAV--DKKRKPAVLTHLI 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ + ++F K L LE +G + AIHGN Q +R K L+ FK+G+++++ Sbjct: 246 K-ENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKIL 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+PN E+Y+HRIGRT RAG G+A +LV +++ + Sbjct: 305 VATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWG 364 Query: 360 IEKLIEKKVD 369 IE +I++ ++ Sbjct: 365 IEHVIQQHIE 374 >gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 460 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PT IQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1] Length = 453 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 YMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|193212728|ref|YP_001998681.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193086205|gb|ACF11481.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB 8327] Length = 427 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 156/374 (41%), Positives = 235/374 (62%), Gaps = 5/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL ++ A+ + GY PTPIQ + IPL+L+ HD+ G AQTGTGKTA+F LP+L Sbjct: 1 MQFSALGLIDPLLKALDEEGYSSPTPIQAEAIPLLLEGHDLLGCAQTGTGKTAAFALPIL 60 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + R R R L+L PTRELA Q+ ++FE YG++ L ++ GG+ Q + Sbjct: 61 QLLHQDQEHGRKRKIRCLVLTPTRELALQIGESFEAYGRHTGLKSTVIFGGVNQNPQTRT 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+L+ TPGR+LD + L + +IE V+DEADRMLDMGFI ++ + + +P + Sbjct: 121 LAGGVDILVATPGRLLDLMGQEHLHLRDIEYFVLDEADRMLDMGFIHDVKKVLAALPKKK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM + ++ + L PK++ V SSTAE I + + K +LL+ L Sbjct: 181 QSLFFSATMPPAIVNLAASILHQPKKVTVTPVSSTAEIINQHIL--FVDRENKNSLLEHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ++D + + + F K + L ++ AIHGN Q +R + L NFK G ++ Sbjct: 239 LQNRD-ISSVLAFTRTKHGADKVAKFLTRKNIKAEAIHGNKSQNARQRALGNFKSGETRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ D+ +V N D+PN AE Y+HRIGRTGRAG G A++ E+ +++ Sbjct: 298 LVATDIAARGIDVDDLEYVINIDLPNVAETYVHRIGRTGRAGNRGTAYSFCNAEEKEYLR 357 Query: 359 AIEKLIEKKVDWLN 372 IEKLI+K + ++ Sbjct: 358 DIEKLIDKSITVID 371 >gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 455 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 163/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELL- 236 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL Q + ++F K +L L K G AIHGN Q +R + L++FK G + Sbjct: 237 SLLIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCIDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] Length = 472 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + ++N++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAE++ +K LL Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|117621455|ref|YP_855288.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562862|gb|ABK39810.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 416 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 168/402 (41%), Positives = 238/402 (59%), Gaps = 11/402 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADL LSP++ + + GY PTP+Q IP++L D+ AQTGTGKTA+FVLP+L Sbjct: 6 FADLALSPRLQQTLTELGYAAPTPVQASAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQ 65 Query: 62 ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ P R L+L PTRELA QV ++ +Y K +LT L+ GG+ AQ + L+ Sbjct: 66 LLQNPTNDAPRPIRALVLVPTRELAIQVHESVTRYAKGTDLTSTLVYGGVSIAAQVEALK 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+LDH +G L + + LV DEADRMLDMGF+ I+ + +P RQT Sbjct: 126 AGVDILIATPGRLLDHLRQGALSLAALHHLVFDEADRMLDMGFMDEIKELLKQIPADRQT 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT D L +S+ L +P+ IEV ++TA +E +K AL++ +L Sbjct: 186 LLFSATCDDNLFALSKVLLHDPELIEVAPRNTTAAEVEQRVYTVDG--DRKLALVEHMLN 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF ++ L L K G + A HG++ Q +R K+L F+ GT+Q +V Sbjct: 244 VKG-WAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLEFRAGTLQALV 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI D+ +V N + P AE+Y+HRIGRTGRAG G A TL + ED ++ + Sbjct: 303 ATDVAARGLDISDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKV 362 Query: 361 EKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKN 396 E +++ ++ W G DL+ P P AQ ARK Sbjct: 363 EAVLDTRLPQQWFPGFEPDLTRFEPEPRRSSKAAQKQRARKQ 404 >gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 460 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PT IQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1] gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1] Length = 439 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum Z-7303] Length = 431 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 160/366 (43%), Positives = 233/366 (63%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS + A+ D GY +PTPIQ ++IP ++Q DV G AQTGTGKTA+F +P L Sbjct: 6 FNELNLSRDIEKAIEDLGYEEPTPIQARSIPYIMQGRDVIGQAQTGTGKTAAFGIPALEK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ +V+ T++L PTRELA QVAD K + + V + GG P E Q K L +G Sbjct: 66 VDRNSKKVQ---TIVLCPTRELANQVADELNKLARYKKIKVLPIYGGQPIERQIKALNKG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A ++I TPGRILDH R L ++N+++ V+DEAD MLDMGF I+ I S +P RQT L Sbjct: 123 AQIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLDMGFREDIELILSKLPDKRQTTL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + K+++ + NP+ I+ T +E + + SK AL + L Sbjct: 183 FSATMPGPIMKMTKKYQDNPELIKTVHKKLTVPQVEQTYFEV-KERSKPEALCR--LTDF 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +K+ ++FCN KK V NL +L+ +G+ +HG++ Q+ R K++SNFK G I+ +VA+ Sbjct: 240 YNIKSSLVFCNTKKGVDNLVETLKTRGYLADGLHGDMKQKQRDKVMSNFKNGEIETLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+D+ ++ VFN+DVP E+Y+HRIGRTGRAG+ GKAFT ++I I I+K Sbjct: 300 DVAARGIDVENIEVVFNYDVPQDEESYVHRIGRTGRAGKQGKAFTFAFGKEIYKIKDIQK 359 Query: 363 LIEKKV 368 + K+ Sbjct: 360 YTQTKI 365 >gi|326405112|ref|YP_004285194.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301] gi|325051974|dbj|BAJ82312.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301] Length = 470 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 156/367 (42%), Positives = 230/367 (62%), Gaps = 5/367 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL+ ++ A+ + Y PTPIQ ++IP++L+ HD+ GIAQTGTGKTA+FVLP+L Sbjct: 3 DFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILH 62 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + RAR R R L+L PTRELA Q+AD YGK +VA++IGG Q +++ Sbjct: 63 RIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRM 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E G D+L+ TPGR+LDH G + ++ +E +V+DEAD+MLD+GFIP I+ I + +P RQ Sbjct: 123 ESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 ++FSATM ++ ++ FL++P+ + V+ S + I+ V A KK L L Sbjct: 183 AVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQ-VLLLAPEEKKDKL--AWL 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ I+F K + LE G AIHGN Q R + L F+ G I+++ Sbjct: 240 LADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V HV NF++PN E+Y+HRIGRT RAG G A +LV ++ ++ Sbjct: 300 VATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLRD 359 Query: 360 IEKLIEK 366 IE LI + Sbjct: 360 IETLIGR 366 >gi|311103372|ref|YP_003976225.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8] gi|310758061|gb|ADP13510.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8] Length = 506 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/370 (43%), Positives = 232/370 (62%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ + GY PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L + Sbjct: 7 FADLGLADSLLRAIAETGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHL 66 Query: 63 LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + +R PR LIL PTREL AQV ++ + YGK L ++ GG+ Q L Sbjct: 67 LMQKKPELRKPGRPRCLILTPTRELTAQVEESVQTYGKYTPLNSMVMFGGVNINPQISAL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 127 RKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++ ++ L NP + V TP +TA + V Q+ K+ L+ ++ Sbjct: 187 NLLFSATFSDEIRTLARGVLNNPGEVSV-TPRNTATELVTQTVHMVEQHHKR-DLISHII 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L L K G + AIHGN Q +R + L+ FK+ T+ ++ Sbjct: 245 R-ESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVL 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV +IK + Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKD 363 Query: 360 IEKLIEKKVD 369 IE+LI+K ++ Sbjct: 364 IERLIKKTIE 373 >gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3] Length = 439 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|297538309|ref|YP_003674078.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp. 301] gi|297257656|gb|ADI29501.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301] Length = 466 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 244/373 (65%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DLGL+P+++ A+ ++GY KPTPIQ + IP+ L D+ AQTGTGKTA+F LP+L Sbjct: 10 LAFTDLGLAPELLKALTESGYTKPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFALPLL 69 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + P R LIL PTRELA QV ++ + Y K+ L ++ GG+ + Q Sbjct: 70 QKLLPLASSSASPAKHPVRALILTPTRELAIQVEESVKAYAKHTPLRSLVVYGGVDIKTQ 129 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G +VL+ TPGR+LDH + + +N ++ILV+DEADRMLDMGF+P ++ I +L+P Sbjct: 130 TPHLKTGVEVLVATPGRLLDHIEQKTIQLNQVQILVLDEADRMLDMGFMPDLKRILALLP 189 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ L+FSAT +++++K+++ FL P+ IEV ++T + + V AQ S K LL Sbjct: 190 KQRQNLMFSATFSNDIKKLADEFLTKPQLIEVARSNATNDNVTQK-VYEVAQ-SDKETLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 QLL++ + + IIF K L SL ++G + AIHG+ Q+ R+K L FK GT Sbjct: 248 IQLLKAANASQV-IIFTKTKITASRLSRSLAREGIAADAIHGDKTQQERIKALDGFKAGT 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I +VA+D+AARGLDI ++ V N+++P+ E+Y+HRIGRTGRAG G A + V+ E+ K Sbjct: 307 ITALVATDVAARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGIAISFVSPEEDK 366 Query: 356 HIDAIEKLIEKKV 368 +I IEKLI++++ Sbjct: 367 YIVEIEKLIKRQI 379 >gi|213647600|ref|ZP_03377653.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 364 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 162/368 (44%), Positives = 234/368 (63%), Gaps = 8/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP IEV ++ +E + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q++ Q + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 QMI-GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLI 364 + IEKL+ Sbjct: 357 LRDIEKLL 364 >gi|23013512|ref|ZP_00053398.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 311 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 150/282 (53%), Positives = 205/282 (72%), Gaps = 3/282 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P+++ A+ ++GY PTPIQ + IP+VL DV G AQTGTGKTASF LPM+ I Sbjct: 20 FEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEI 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L GRA+ RMPR+LIL PTRELAAQVA+NF+KYGK + L AL+IGG Q L+RG Sbjct: 80 LAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVALLDRG 139 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVLI TPGR+LD F RG++L+N++++LVIDEADRMLDMGFIP ++ I L+P RQTL Sbjct: 140 VDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKIRQTLF 199 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++++++ FL NPK ++V+T +S A T+ +A + K+ L+ L++ + Sbjct: 200 FSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQA-MAVVEEIDKR-ETLRHLIRVE 257 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284 + +KN IFCN+K++V L SL+K GF V +HG++ Q +R Sbjct: 258 E-VKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSAR 298 >gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii TW07627] gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii TW07627] Length = 447 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 YMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 460 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PT IQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLADHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|330445855|ref|ZP_08309507.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490046|dbj|GAA04004.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 455 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 157/365 (43%), Positives = 226/365 (61%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V AV + GY PTPIQ K IP+ L ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ G + R + R LIL PTRELA QV DN ++Y K+ NL + GG+ +E Q ++L Sbjct: 61 QMLDDGIKVRPKRVRALILAPTRELAVQVEDNIKQYSKHLNLKSMAMYGGVDYEPQKRRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + IEILV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSAT++D+++ +++ ++NP I V +S I+ V K +LL L+ Sbjct: 181 NMLFSATLSDQVRFLAKTAVRNPIEISVAKNASADPKIDQWLVTV--DKDMKSSLLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q Q + +IF K L LEK+G + H Q R ++L +FK G +Q + Sbjct: 239 QEQQ-WEQALIFIETKHGAAKLVTQLEKRGIKAESFHSGRSQGVRSQLLEDFKNGKLQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ +A+RG+DI + V N+D+P E Y+HRIGRTGRAG G+A + V+K++ K++ Sbjct: 298 IATGVASRGIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSKDNFKNLCM 357 Query: 360 IEKLI 364 IE L+ Sbjct: 358 IESLL 362 >gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC 19414] Length = 475 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 159/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F DLG++ K++ A+ + GY KPTPIQ + IP +L+ +D+ G+AQTGTGKTA+F +P L Sbjct: 1 MEFKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTL 60 Query: 61 TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ R R R L+L PTRELA Q+ +NFE YGK +L ++ GG+ Q K Sbjct: 61 QNLKEKAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKYMDLRSTVVFGGVAQRYQVK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D LI TPGR+ D ++G + ++ IEI ++DEADRMLDMGFI ++ I +P Sbjct: 121 ALRNGVDTLIATPGRLEDLMSQGYIDLSQIEIFILDEADRMLDMGFINDVKRIIKKLPKK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSATM E+ ++E L NP + V SST ET+E Y K LL Sbjct: 181 KQTLLFSATMPSEISSIAEMLLNNPTTVAVTPVSSTVETVEQSVY--YVDQRNKTQLLID 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+++ + + ++F K+ + L + + AIHG+ Q +R + LS FK+GTI Sbjct: 239 VLENK-SFDSVLVFTRTKRGADRVARDLCRSNINAVAIHGDKSQGARQRALSGFKDGTIN 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +MVA+D+AARG+DI ++ +V N+++P E Y+HRIGRTGRAG G A + E+I + Sbjct: 298 VMVATDIAARGIDINELKYVVNYELPEVPETYVHRIGRTGRAGFSGAAISFCNFEEIPLL 357 Query: 358 DAIEKLIEKKV 368 IE +I+ +V Sbjct: 358 KDIEHVIQMRV 368 >gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria MC40-6] gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MC40-6] Length = 479 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + ++N++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAE++ +K LL Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria AMMD] gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD] Length = 480 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + ++N++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAE++ +K LL Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383] gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383] Length = 484 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 231/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + ++N++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAE++ +K LL Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|88859340|ref|ZP_01133980.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2] gi|88818357|gb|EAR28172.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2] Length = 413 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 156/367 (42%), Positives = 240/367 (65%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++V AV + GY +PTPIQ++ IP+VL+ DV +A TGTGKTA F LPM+ Sbjct: 1 MSFDALGLCDELVKAVTEQGYTQPTPIQVEAIPVVLRLRDVMAVANTGTGKTAGFTLPMV 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L G A+ + R L++ PTRELAAQVA N + Y ++ N++ A++ GG+ E Q +L Sbjct: 61 QLLSGGAIAQPKSVRALVITPTRELAAQVAQNVQDYSRHTNISSAVVFGGVRIEPQIAQL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D +N+ + N +E+LV+DEADRMLD+GFI I++I +L+P RQ Sbjct: 121 ATGVDVLVATPGRLVDLYNQQAINFNQLELLVLDEADRMLDLGFIDDIRHIQTLLPSERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT +DE++ +++ L NP+ IEV+ +ST +T++ + + K AL+ L Sbjct: 181 TLMFSATFSDEIKSLAKGMLNNPQLIEVSPVNSTVDTVKQK-IYPVDKTRKSEALIYLLK 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q + ++F K+ +L L G + +IH N Q +R L+ FK G I+++ Sbjct: 240 KHQ--WRQVLVFSRTKQGADSLVTQLNNAGINSASIHANRTQHARTHALNGFKSGEIKVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RG+D+ + V N D+P AE+Y+HRIGRTGRAG G A +L + ++ + A Sbjct: 298 VATDIASRGIDVNQLPCVINLDLPYVAEDYVHRIGRTGRAGTAGLAISLFSIDESNQLQA 357 Query: 360 IEKLIEK 366 IE+L+ + Sbjct: 358 IERLLGR 364 >gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865] gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865] Length = 462 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 236/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PT IQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI ++ V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDINELPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|319427184|gb|ADV55258.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 413 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 172/406 (42%), Positives = 247/406 (60%), Gaps = 14/406 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+ +V + + GY PTPIQ + IP++L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSSLSLNATLVNTITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPIL 60 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L E+ RV+ + L+L PTRELA QV +F KY KN ++ + + GG+ +AQ Sbjct: 61 HLLMAKNVEQKAERVKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + G DVLI TPGR+LDH +G L +N + LV DEADRMLDMGF+ I + VP Sbjct: 121 VDVFKTGIDVLIATPGRLLDHLRQGVLNLNQLTTLVFDEADRMLDMGFMDEINAVLKQVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT+ D + ++S++ L+ PK IEV ++TA +E A + +K + Sbjct: 181 KDRQTLLFSATLDDAIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAIDS--DRKTEFV 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++S + +IF K+ V L L K A HG++ Q +R K+L FK G Sbjct: 239 SHLIRS-NHWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGN 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 IQ++VA+D+AARGLDI ++ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED Sbjct: 298 IQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDTL 357 Query: 356 HIDAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARK 395 ++ +E +++K++ W G D + + P P AQ A+K Sbjct: 358 LLEEVEVVLDKRLPQQWYPGFEPDFNKMEPEPRRNGKAAQKQRAKK 403 >gi|302384214|ref|YP_003820037.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264] gi|302194842|gb|ADL02414.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 528 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 155/369 (42%), Positives = 230/369 (62%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ GY PTPIQ + IP V+ D+ GIAQTGTGKTA+F LP+L Sbjct: 17 FESFGLNKALLQALTTEGYTVPTPIQAQAIPSVMLGKDLLGIAQTGTGKTAAFALPILHR 76 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R +PRT LIL PTRELA+Q+AD+F+ YG++ VA++ GG+ + Q + + Sbjct: 77 LAENRV-APLPRTTRCLILSPTRELASQIADSFKAYGRHLGFKVAVVFGGVKYGPQERAI 135 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G DVL+ TPGR+LDH + L +++ EI V+DEAD+MLD+GF+ I+ I S +P RQ Sbjct: 136 QAGLDVLVATPGRLLDHMQQKTLDLSSTEIFVLDEADQMLDLGFVKPIRQIVSRIPAKRQ 195 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L FSATM E+ K++ L+ P +++V S+T E I + + + +K ALL ++ Sbjct: 196 NLFFSATMPTEIGKLAGELLKEPVKVQVTPQSTTVERINQSVI--HVEQGRKRALLTEMF 253 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++F K + LE G AIHGN Q R + L+ FK G ++++ Sbjct: 254 -ADDNFTRCLVFTKTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERTLAAFKAGKLRVL 312 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV NF++P E Y+HRIGRT RAG G A + VA +++K + Sbjct: 313 VATDIAARGIDVDGVSHVVNFELPFVPEAYVHRIGRTARAGADGSAISFVAGDEMKLLKD 372 Query: 360 IEKLIEKKV 368 IEK+ +K+ Sbjct: 373 IEKVTRQKI 381 >gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium cryptum JF-5] gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5] Length = 525 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 156/367 (42%), Positives = 230/367 (62%), Gaps = 5/367 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL+ ++ A+ + Y PTPIQ ++IP++L+ HD+ GIAQTGTGKTA+FVLP+L Sbjct: 58 DFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILH 117 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + RAR R R L+L PTRELA Q+AD YGK +VA++IGG Q +++ Sbjct: 118 RIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRM 177 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E G D+L+ TPGR+LDH G + ++ +E +V+DEAD+MLD+GFIP I+ I + +P RQ Sbjct: 178 ESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQ 237 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 ++FSATM ++ ++ FL++P+ + V+ S + I+ V A KK L L Sbjct: 238 AVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQ-VLLLAPEEKKDKL--AWL 294 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ I+F K + LE G AIHGN Q R + L F+ G I+++ Sbjct: 295 LADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVL 354 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V HV NF++PN E+Y+HRIGRT RAG G A +LV ++ ++ Sbjct: 355 VATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLRD 414 Query: 360 IEKLIEK 366 IE LI + Sbjct: 415 IETLIGR 421 >gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC 35937] gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC 35937] Length = 461 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PT IQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 460 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PT IQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|166713488|ref|ZP_02244695.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 460 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PT IQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026] gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412] gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302] gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1] gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143] gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026] gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412] gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302] gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1] gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143] Length = 454 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP V++ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|24112165|ref|NP_706675.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 301] gi|30062282|ref|NP_836453.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 2457T] gi|110804797|ref|YP_688317.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5 str. 8401] gi|24051003|gb|AAN42382.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301] gi|30040527|gb|AAP16259.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T] gi|110614345|gb|ABF03012.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401] gi|281600121|gb|ADA73105.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017] gi|313650305|gb|EFS14717.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str. 2457T] gi|332759696|gb|EGJ89999.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 4343-70] gi|332760467|gb|EGJ90756.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2747-71] gi|332763287|gb|EGJ93529.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671] gi|332767959|gb|EGJ98145.1| DEAD-box-containing ATP-dependent RNA helicase family member [Shigella flexneri 2930-71] gi|333006587|gb|EGK26086.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6] gi|333021182|gb|EGK40438.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304] Length = 406 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|307823524|ref|ZP_07653753.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] gi|307735509|gb|EFO06357.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] Length = 419 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 163/371 (43%), Positives = 230/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ DAGY P+PIQ + IP VL HDV AQTGTGKTA F LP+L Sbjct: 1 MPFTTLGLSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPIL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117 L +K R R LIL PTRELAAQ+ ++ KYG + + L ++ GG+ Q Sbjct: 61 HRLSQKAYGNNRPVRVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L G D+L+ TPGR+LD N+ + ++ +E L++DEADRMLDMGFI I+ I + +P Sbjct: 121 RLRGGVDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +++++K++ L NP +IEV ++ AE +E VA + K LL Sbjct: 181 RQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQ--VAYLVNKANKTELLCH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ D + ++F K L L K AIHGN Q +R LS FK G I+ Sbjct: 239 LIKEHD-WQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + HV NF++P E+Y+HRIGRTGRAG G+A +LV+ ++ + Sbjct: 298 VLVATDVAARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISLVSHDEYSFL 357 Query: 358 DAIEKLIEKKV 368 +EKLI K++ Sbjct: 358 RLVEKLIGKEI 368 >gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. B100] gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris] Length = 462 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PT IQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 61 QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 239 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 298 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 357 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 358 LRQIVRMLGRDVE 370 >gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019] gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019] Length = 454 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARCNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114] gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114] Length = 487 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 171/440 (38%), Positives = 262/440 (59%), Gaps = 30/440 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ D GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L + Sbjct: 28 FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLEL 87 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 88 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTA 147 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 148 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 207 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A A KK +LL++ Sbjct: 208 RQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDAL--KKRSLLER 265 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ + +IHG+ Q+SR++ L+ FKEGT++ Sbjct: 266 LIVDLH-MNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLR 324 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ K + K Sbjct: 325 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 384 Query: 358 DAIEKLIEKKVD----------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407 +AI++L ++ W + D N + QHN +R S D Sbjct: 385 EAIKELTGSDLNVERIEGFEPHWWDND----NQNEAEAQPVQHNDSR--------SRRDD 432 Query: 408 RRKKNYSSQKSHIPLKESEK 427 R K+N + KS K++E+ Sbjct: 433 RNKRNEYANKSDKNSKKAEE 452 >gi|163792426|ref|ZP_02186403.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium BAL199] gi|159182131|gb|EDP66640.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium BAL199] Length = 446 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 227/370 (61%), Gaps = 5/370 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 DF LGL+ ++ GY PTPIQ+ IP +L D+ G+AQTGTGKTA+F LPML Sbjct: 5 DFRSLGLAESLLRTAATCGYTTPTPIQVAAIPPLLAGRDLIGLAQTGTGKTAAFTLPMLH 64 Query: 61 TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + G R+ + PR LIL PTRELA Q+A E +G++ L AL+ GG+ Q L Sbjct: 65 RLAAAGEKRIPKAPRALILTPTRELAVQIAGVVETFGRSIGLRHALVHGGVSARPQAVAL 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG +V+I TPGR+LD N+ + ++ +E V+DEADRMLD+GF+ ++ I +LVP RQ Sbjct: 125 QRGVEVMIATPGRLLDLINQRAVFLDKVEYFVLDEADRMLDLGFVRDVKRIAALVPANRQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++E+ L+NP+R+++ S+ E I+ + + + K LL +LL Sbjct: 185 TALFSATMPQSIIELTESLLRNPERVQITPTSTPIERIQQSVM--FVARANKRTLLARLL 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + I+F K V + SL + G + +HGN Q +R L FK G + ++ Sbjct: 243 GAPD-VSRAIVFVRTKHGVDRVVDSLRRDGLTAEGLHGNKSQGARQTALDAFKRGRLPIL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ ++ HV N D+P+ E YIHRIGRT RAG G A + E+I + A Sbjct: 302 VATDIAARGIDVHEISHVINLDLPDVPETYIHRIGRTARAGAGGIAVSFCENEEIGNFMA 361 Query: 360 IEKLIEKKVD 369 IE I + +D Sbjct: 362 IESEIRRTID 371 >gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp. SIP3-4] gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp. MP688] gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4] gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688] Length = 459 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 160/371 (43%), Positives = 240/371 (64%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+P+++ A+ + GY PTPIQ + IP+VLQ HD+ AQTGTGKTA+F LP+L Sbjct: 8 FADLGLAPEILKALEEFGYTVPTPIQAQAIPVVLQGHDLMAGAQTGTGKTAAFSLPLLQK 67 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + P R LIL PTRELA QV ++ + Y K+ L ++ GG+ + Q Sbjct: 68 LLPQASSSASPARHPVRALILTPTRELAIQVEESVKVYAKHTALRSLVVFGGVDIKTQTP 127 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G ++L+ TPGR+LDH + + + +++L++DEADRMLDMGF+P ++ I +L+P Sbjct: 128 SLMKGVEILVATPGRLLDHVEQRTVQLGQVQMLILDEADRMLDMGFMPDLKRILALLPKK 187 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ L+FSAT +++++K+SE FL NPK IEV ++ ++ + V + SK L + Sbjct: 188 RQNLMFSATFSNDIKKLSEEFLTNPKLIEVARSNAASDKVTQK-VYQLDKDSKDSFLAKL 246 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+S + I+F K L L ++G + AIHG+ Q+ RM+ L FK+G + Sbjct: 247 LLESNS--EQTIVFTKTKLTASRLARQLVREGIAADAIHGDKSQQERMQALEAFKQGKVT 304 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI + V NF++P+ E+Y+HRIGRTGRAG G A +LV E+ K++ Sbjct: 305 TLVATDVAARGLDIDQLPMVINFELPSAPEDYVHRIGRTGRAGASGTAISLVCPEEEKYL 364 Query: 358 DAIEKLIEKKV 368 IEKLI++++ Sbjct: 365 KEIEKLIKREI 375 >gi|241668567|ref|ZP_04756145.1| ATP-dependent RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877101|ref|ZP_05249811.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843122|gb|EET21536.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 445 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 174/444 (39%), Positives = 272/444 (61%), Gaps = 11/444 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+P + A+ GY KPTPIQ K IPLVL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MQFSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ L +++ V+DEADRMLDMGFI ++ I L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKRIHKLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E+ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSPEITSLANEFLDNPQSVSADVVNTTVKKITQK-IYTLDKSTKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + QD + ++F K + L G + AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQD-LHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSN 357 Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKKNYSSQ 416 IE LI + + L G ++ N P+ +++ A+K + + +T ++ KN S + Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPI--TSMSRKTKAKKIDEVKIIATKRANKNNKNTSQK 415 Query: 417 KSHIPLKESEKISKLQQDIQENDA 440 KS K+ K K++Q I +N + Sbjct: 416 KSSNHNKDFAK--KIKQKIHQNKS 437 >gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] Length = 480 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + ++N++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAE++ +K LL Sbjct: 181 QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|221134107|ref|ZP_03560412.1| DEAD/DEAH box helicase domain-containing protein [Glaciecola sp. HTCC2999] Length = 442 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 234/372 (62%), Gaps = 7/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGLSP V+ AV D GY +P+PIQ + I VL DV AQTGTGKT +F LP++ + Sbjct: 5 FSDLGLSPAVLQAVSDQGYTQPSPIQQQAIGPVLDGQDVMAAAQTGTGKTGAFALPIVNL 64 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R P + LIL PTRELAAQVA++ + ++ L ++ GG+ Q + L Sbjct: 65 LSETSKRPS-PNNIKALILTPTRELAAQVAESVKACAQHTQLRSMVVFGGVSINPQMQGL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+LI TPGR+LD + + + +EILV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 124 RRGCDILIATPGRLLDLHQQNAVKFSQLEILVLDEADRMLDMGFIHDIKRIMKLIPAKRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +D ++++++ F Q P I V +ST ++ V +A+ S K LL +L+ Sbjct: 184 TLLFSATFSDPIRELAKQFTQEPIEISVTPKNSTTPLVKQLLV--HAEKSSKTTLLIKLI 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K + L + + AIHGN Q +R K L++FK G ++++ Sbjct: 242 KDND-WQQVLVFTRTKHGANRIAQKLGNKNITAAAIHGNKSQGARTKALADFKSGDVRVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + +V N+D+P+ E+Y+HRIGRTGRAG G A + EDIK ++ Sbjct: 301 VATDIAARGIDIDQLPNVINYDLPHVPEDYVHRIGRTGRAGATGHAVSFATNEDIKQLND 360 Query: 360 IEKLIEKKVDWL 371 I+ LI + ++ L Sbjct: 361 IQNLIGEHIEVL 372 >gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354] gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354] Length = 454 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP V++ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|74311340|ref|YP_309759.1| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046] gi|73854817|gb|AAZ87524.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046] gi|323165715|gb|EFZ51501.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G] Length = 454 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDYLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311] gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311] Length = 426 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 158/362 (43%), Positives = 229/362 (63%), Gaps = 4/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS ++ A+ + GY P+PIQ++ IP V+ DV AQTGTGKTA F LPML Sbjct: 17 FDSLGLSQPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLER 76 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G R+ R L+L PTRELAAQV + +Y K LT ++ GG+ Q ++L++ Sbjct: 77 LNHGARPGRLQIRALVLTPTRELAAQVLASVREYSKYLQLTSDVVFGGVKINPQIQRLQK 136 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVL+ TPGR+LD +G + + +E LV+DEADRMLDMGFI I+ + S +P RQTL Sbjct: 137 GVDVLVATPGRLLDLLQQGAVRFDRVEFLVLDEADRMLDMGFIHDIRRVISRLPDRRQTL 196 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +FSAT + ++K++ L +P +I+V + T ++E V ++K LL L++S Sbjct: 197 MFSATFSAPIRKLATGLLDHPVQIQVAPANQTVRSVEQ--VVHPCDMARKVDLLSHLIRS 254 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++F K + L +QG AIHGN Q +R + L FK+G+++++VA Sbjct: 255 GEWLQV-LVFSRTKHGANRVVDRLSQQGLLAAAIHGNKSQGARTRALQGFKDGSVRVLVA 313 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI + HV N D+PN AE+Y+HRIGRTGRAG G A +LVA E+ + AIE Sbjct: 314 TDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAISLVAAEEALLLKAIE 373 Query: 362 KL 363 +L Sbjct: 374 RL 375 >gi|242239842|ref|YP_002988023.1| DEAD/DEAH box helicase [Dickeya dadantii Ech703] gi|242131899|gb|ACS86201.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703] Length = 452 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 163/374 (43%), Positives = 233/374 (62%), Gaps = 12/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY +PTP+Q + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG--RARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L +A+ R P R LIL PTRELAAQ+ DN Y K L ++ GG+ Q Sbjct: 61 QLLNDNPPQAKGRRPVRALILTPTRELAAQIGDNVTAYSKYLRLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+LI TPGR+LD ++ + ++ ++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNAVDLSKVDILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ LLFSAT +DE++ ++ L NP +EV NTPS H +K L Sbjct: 181 RQNLLFSATFSDEIKALAGKLLTNPASVEVVRRNTPSELVTQHVHLV-----DKKRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ Q+ + ++F K +L L K G + AIHGN Q +R + L+NFK+G Sbjct: 236 LSHLI-GQNNWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 295 EIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEH 354 Query: 355 KHIDAIEKLIEKKV 368 K + IE+L+++ + Sbjct: 355 KLLRDIERLLKRDI 368 >gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510] gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510] Length = 512 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 163/402 (40%), Positives = 242/402 (60%), Gaps = 11/402 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ LGL ++ AV + GY TPIQ IPL+L DV G+AQTGTGKTA+F LP+L Sbjct: 10 EFSGLGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPILQ 69 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + RV + PR LIL PTRELA Q+ D+F YG++ + ++ GG+ Q + Sbjct: 70 RLFQNKKRVAAKSPRVLILTPTRELALQIGDSFTTYGRHLPIRRTVIHGGVGQSPQVAAI 129 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG +VLI TPGR+LD + + + IE+ V+DEADRMLDMGFI ++ + +++P RQ Sbjct: 130 ARGVEVLIATPGRLLDLMAQNHVNLGAIEVFVLDEADRMLDMGFIRDVRKVVAVLPKERQ 189 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM D + ++ + L + +RIEV S+T E I + + + K LL LL Sbjct: 190 TLLFSATMPDAVVDLANSILTDAERIEVTPQSTTVERINQRVL--FVERGDKRRLLADLL 247 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + M I+F K + L+K G + AIHG+ Q +R++ L +F+ G ++ + Sbjct: 248 EDE-AMARTIVFARTKHGADRIADHLKKAGITADAIHGDKSQSARVRALESFRNGELRAL 306 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRT RAG G A + E++ ++ Sbjct: 307 VATDIAARGIDIDGISHVINFDLPNEPESYVHRIGRTARAGTDGSAVSFCDHEEVGYLKD 366 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 IEK I + + + + P D+AQ + + K P P+ Sbjct: 367 IEKTIRQPIP------ADASHPYHAADVAQIHASSKPPPRPK 402 >gi|254282473|ref|ZP_04957441.1| dead/deah box helicase domain protein [gamma proteobacterium NOR51-B] gi|219678676|gb|EED35025.1| dead/deah box helicase domain protein [gamma proteobacterium NOR51-B] Length = 433 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 166/371 (44%), Positives = 236/371 (63%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGLS +++ AV GY + TPIQ + IPLVL+ DV AQTGTGKTA F LP+L Sbjct: 1 MFFKDLGLSAELIRAVEKKGYSEATPIQQQAIPLVLRGKDVLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ PR L+L PTRELAAQV ++ YG A++ GG+ Q +K Sbjct: 61 QQLQNLHKPGHKSFPRVLVLTPTRELAAQVQESVRDYGAFLPFRSAVIFGGVSINPQKQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+++ TPGR+LDH + + + IE LV+DEADRMLDMGFI I+ I ++P R Sbjct: 121 LIRGVDIIVATPGRLLDHVQQRSVDLTRIETLVLDEADRMLDMGFIHDIKRIVKIIPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT + E++ ++ FL++P+ I+V TP +TA + V + K+ L QQ+ Sbjct: 181 QTLLFSATFSREIKGLAAEFLRSPEEIQV-TPQNTATDLVTQVVYPVDKKRKRELLSQQI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + +IF K + L L+K G + AIHGN Q +R + L++FK GTI+ Sbjct: 240 --GENNWQQVLIFTRTKHSANRLAEQLDKDGITAAAIHGNKSQGARTRALADFKNGTIRA 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NF++PN AE+Y+HRIGRT RAG+ G A +LV +++K + Sbjct: 298 LVATDIAARGIDIQKLPHVVNFELPNTAEDYVHRIGRTARAGQEGSAISLVCVDELKLLK 357 Query: 359 AIEKLIEKKVD 369 IEKL + ++ Sbjct: 358 DIEKLTGQNIE 368 >gi|163735815|ref|ZP_02143244.1| putative ATP-dependent RNA helicase, putative [Roseobacter litoralis Och 149] gi|161390901|gb|EDQ15241.1| putative ATP-dependent RNA helicase, putative [Roseobacter litoralis Och 149] Length = 433 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 162/390 (41%), Positives = 243/390 (62%), Gaps = 15/390 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF + L P++V + G PTPIQ + IP + DV G+AQTGTGKTA+F +P++ Sbjct: 3 DFEMMNLPPELVARLGRMGLNDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62 Query: 62 -ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +LE GR + R L+L PTRELA Q++ N + +N + VA+++GG Q K+L Sbjct: 63 QMLELDGRPAPKSVRGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQIKRL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG D+L+ TPGR+LD +R + ++ LV+DEAD+MLDMGFI ++ I S++P RQ Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVRLDETVFLVLDEADQMLDMGFIHDLRKIASVIPKERQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237 T+LFSATM ++ +++ ++L++P R+EV+ P A+ + E F+A S+K ALL + Sbjct: 183 TMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAK----SEKSALLIE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L + ++F K L SL K G++ +IHGN Q R + ++ FK G I+ Sbjct: 239 MLDKHRE-ERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIK 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIPDV HV+N+D+PN ENY+HRIGRT RAG+ G A A +++ + Sbjct: 298 VLVATDVAARGLDIPDVKHVYNYDLPNVPENYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387 AI+K + + +G P E DI Sbjct: 358 KAIQKTMSISIPVGSGR------PWEAADI 381 >gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase [Sutterella wadsworthensis 3_1_45B] gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase [Sutterella wadsworthensis 3_1_45B] Length = 503 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 176/438 (40%), Positives = 255/438 (58%), Gaps = 33/438 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F GL P+++ A+ GY +PTPIQ K IP+VL DV G AQTGTGKTA + LP++ Sbjct: 30 FDQFGLDPRILSAIERMGYTQPTPIQEKAIPVVLMGGDVMGAAQTGTGKTAGYGLPLIAR 89 Query: 62 ILEKGRARV---RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 IL K + R P R LIL PTRELA QV+DN KY + L ++ GG+ Q Sbjct: 90 ILPKANTSMSPARHPVRALILAPTRELADQVSDNLVKYCADTPLRAGVVYGGVDIRPQAD 149 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG ++L TPGR+LDH + + ++ +EI+V+DEADRMLDMGF+P I I L+P Sbjct: 150 MLRRGVEILTATPGRLLDHVQQRSVNLSQVEIVVLDEADRMLDMGFLPDISRILQLLPQH 209 Query: 178 RQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ+LLFSAT + E++K++++FL+ NP IEV +STAET+ A + +K +L Sbjct: 210 RQSLLFSATFSPEIKKLAKSFLKDNPTVIEVARENSTAETVTQELFAVNDR--EKTDVLI 267 Query: 237 QLLQSQ----DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 +L+++ + ++F N K L +LE+ G + AIHG+ Q R L FK Sbjct: 268 DMLKTRGPEGTPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDKTQEERQVALEGFK 327 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I ++VA+D+AARGLDI ++ V N+DVP AE+Y+HRIGRTGRAG G A L E Sbjct: 328 NGAIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGRAGAKGVATMLATPE 387 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 D + ++AIE L ++ + S++P P ++ +G R+ + Sbjct: 388 DKRLVEAIEALTKQTFKPI-----SISP----------------MPRTRRGSGAPYRRDD 426 Query: 413 YSSQKSHIPLKESEKISK 430 SS + E E++++ Sbjct: 427 RSSYAERVDTPEDERLAR 444 >gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541] gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541] Length = 457 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 171/411 (41%), Positives = 249/411 (60%), Gaps = 20/411 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+ +++ A+ + GY PTPIQ + IP VL +D+ AQTGTGKTA F LP+L Sbjct: 11 FSDLALNEEILRAINELGYDSPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQK 70 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L G R R R LIL PTRELAAQVA+N ++Y ++ N+ ++ GG+ Q K Sbjct: 71 LVDAPRSGNNR-RPIRALILTPTRELAAQVAENVKEYSRHLNIRSFVVFGGVSINPQMMK 129 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G DVLI TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P R Sbjct: 130 LRSGVDVLIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVITKLPKKR 189 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +D++++++ L NP IEV +S +E + + K+ A L Sbjct: 190 QNLLFSATFSDDIKQLASKLLNNPVSIEVAPRNSASEQVTQY---VHLVDKKRKAELLSF 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ + ++F K L L K G AIHGN Q +R + L++FK G I++ Sbjct: 247 MIGRENWQQVLVFTRTKHGANRLAEHLNKDGIKSAAIHGNKSQGARTRALADFKSGDIRV 306 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV NF++PN AE+Y+HRIGRTGRA G+A +LV +++K + Sbjct: 307 LVATDIAARGLDIEQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCIDEVKLLK 366 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409 IEKL++K + P+ ID + + + K PI + S DRR Sbjct: 367 DIEKLLKKSI------------PVMAIDGYEPDPSIKAEPIQKPSQRNDRR 405 >gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus thermophilus ND03] Length = 528 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS + AV+ AG+ +P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +K R + L++ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +NNIE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ F+ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++I+ +FK G I +MV Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDIMV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii M21/2] gi|158446036|gb|EDP23039.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii M21/2] Length = 641 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 157/375 (41%), Positives = 231/375 (61%), Gaps = 4/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV +AGY P+PIQ IP VL D+ G AQTGTGKTA+F LPML Sbjct: 1 MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L R + R LIL PTRELA Q+ ++FE YGK L ++ GG+ Q + L Sbjct: 61 DRLTANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G D+LI PGR+ D +G + ++ +EI V+DEADRMLDMGF+ ++ + + +P RQ Sbjct: 121 KKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM E+++++ L +P ++V+ SST + I+ Y + K LL L+ Sbjct: 181 NLMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLY--YVEKGNKKLLLPWLI 238 Query: 240 QS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ Q + N ++F K + L KQG AIHGN Q +R+ L +FK G ++ Sbjct: 239 KNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ HVFN+D+P E Y+HRIGRT RAG G A + A E+ +++ Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLA 358 Query: 359 AIEKLIEKKVDWLNG 373 IEKL +K+ ++G Sbjct: 359 GIEKLNRRKIPVVSG 373 >gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805] gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805] Length = 429 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 160/367 (43%), Positives = 227/367 (61%), Gaps = 4/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGL ++ A+ D GY P+PIQ + IP V+ DV AQTGTGKTA F LP+L Sbjct: 21 FSDLGLGEPLLEALQDKGYTHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLER 80 Query: 63 LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G+ R R L+L PTRELAAQV +N Y + L ++ GG+ Q +L Sbjct: 81 LRHGKPAGRGQIRALVLTPTRELAAQVLENVRAYSSHLPLRSDVVFGGVKANPQINRLRG 140 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+L+ TPGR+LD +G L + +E LV+DEADRMLDMGFI I+ + L+P RQTL Sbjct: 141 GVDLLVATPGRLLDLHQQGALHFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPVKRQTL 200 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + ++K++ L +P ++V + TA ++E V ++K LL L+++ Sbjct: 201 LFSATFSAPIRKLASGLLHDPVHLQVTPENQTARSVEQ--VVHPCDMARKSDLLSHLIRA 258 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + ++F K + L K+G S AIHGN Q +R + L FK+G I+++VA Sbjct: 259 GD-WRQVLVFSRTKHGANRVADRLSKEGLSAAAIHGNKSQGARTRALQGFKQGNIRVLVA 317 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI + HV N D+PN AE+Y+HRIGRTGRAG G A +LVA E+ + AIE Sbjct: 318 TDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIE 377 Query: 362 KLIEKKV 368 +L +++ Sbjct: 378 RLTGEEL 384 >gi|332662156|ref|YP_004444944.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332330970|gb|AEE48071.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 380 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 159/375 (42%), Positives = 236/375 (62%), Gaps = 6/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ K IP++L+R D+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFKELNLIDPILHALESEGYTIPTPIQQKAIPVLLERKDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + + PR LIL PTRELA Q++++F YG+N L A++ GG+ Q + Sbjct: 61 QLLYQDKGLSKGPRQLKALILTPTRELAIQISESFGAYGRNCGLKHAVIFGGVNQSKQVE 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + G D+L+ TPGR+LD N+ L + +I V+DEADRMLDMGF+ ++ I + +P Sbjct: 121 AIRGGLDILVATPGRLLDLMNQQLLSLQHINTFVLDEADRMLDMGFVHDVKRIITRLPQR 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ+L FSATM E+QK++ L NP ++EV+ SST E +E + + + K LL Q Sbjct: 181 RQSLFFSATMPPEIQKLANTILSNPVKVEVSPISSTTEMVEQ--MVYFVEKRDKRNLLIQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+S + +K+ ++F K + + K G AIHGN Q +R L+ FKEG ++ Sbjct: 239 LLRSPN-VKSALVFTRTKHGADKINRDIVKAGIRSNAIHGNKSQNARQSALNGFKEGKLR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HV N+D+PN E Y+HRIGRTGRAG G A + E+ ++ Sbjct: 298 VLVATDIAARGIDVDNLSHVINYDLPNIPETYVHRIGRTGRAGASGIALSFCDSEERAYL 357 Query: 358 DAIEKLIEKKVDWLN 372 I KLI K + +N Sbjct: 358 RDISKLIAKNIPSVN 372 >gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032] gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis z3032] Length = 500 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 159/372 (42%), Positives = 240/372 (64%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP+++ A+ + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 3 MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 62 Query: 61 TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + A+ R P R LIL PTRELAAQV +N +Y K ++ ++ GG+ Q Sbjct: 63 QRLTAKAPHAQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMM 122 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVLI TPGR+LD ++ + ++ +E+LV+DEADRMLDMGFI I+ + + +P Sbjct: 123 KLRSGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPK 182 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L+NP+ +EV ++ +E I +H + +K LL Sbjct: 183 RQNLLFSATFSDDIKTLAEKLLRNPEEVEVARRNTASEQITQHVH---FVDKKRKRELLS 239 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ + ++F K +L L K G + AIHGN Q +R + L++FK G I Sbjct: 240 YLI-GDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGI 298 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 299 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 358 Query: 357 IDAIEKLIEKKV 368 + IE+++++++ Sbjct: 359 LRDIERVLQREI 370 >gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154] gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154] Length = 532 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 235/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ GYV+ TPIQ KTIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ LI+ PTRELA Q AD +K G++ ++ V ++ GG Q + L+ Sbjct: 61 EHIDLNNKNIQ---ALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGSDIRRQIQNLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+LDH NR + ++N++ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLEDIESIIKNTPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+ NP+ I++ T + ++ FV + ++K + ++ Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RMRENEKFDTMTRIFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q K I+F K+ V L LE +G+ +HG++ Q+ R ++L+ FK I ++V Sbjct: 236 VQ-APKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HV+NFD+P E+Y+HRIGRTGRAG G + TLVA ++ ++ A+ Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAV 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 EDLTKKRMTAL 365 >gi|268680470|ref|YP_003304901.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618501|gb|ACZ12866.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 417 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 163/371 (43%), Positives = 239/371 (64%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DL L+ ++ AV + GY PTP+Q K IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MLFSDLNLNASILKAVQEEGYTHPTPVQEKAIPFILEGRDMLAGAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L K P R LIL PTRELAAQV ++ YGK A++ GG+ Q + Sbjct: 61 ELLLKKPRNKAKPSLRVLILTPTRELAAQVGESVRTYGKYLPFKSAVIFGGVGIHPQIQT 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+L+ TPGR+LDH ++G + + I+ V+DEADRMLDMGFI I+ + +L+P R Sbjct: 121 LKNGIDILVATPGRLLDHVSQGTINLKEIDTFVLDEADRMLDMGFIKDIRKVIALLPSKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +DE++ + + L+NP +EV ++++E + + + +K ALL +L Sbjct: 181 QNLLFSATYSDEIKTLCASILKNPAVVEVARRNTSSELVNQRVIIVDCK--RKTALLGKL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S+ K ++F K + + L K G S AIHGN Q +R K L++FK G+I++ Sbjct: 239 I-SEHKWKQVLVFTRTKHHANKVSEYLSKIGISASAIHGNKSQSARTKALADFKSGSIKV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV N ++PN AE+Y+HRIGRTGRAG G+A +LV ++ ++ Sbjct: 298 LVATDIAARGLDIDQLPHVINLELPNIAEDYVHRIGRTGRAGNEGEAISLVCVDEFDYLK 357 Query: 359 AIEKLIEKKVD 369 IEKLI+K ++ Sbjct: 358 GIEKLIKKTLE 368 >gi|150390712|ref|YP_001320761.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950574|gb|ABR49102.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens QYMF] Length = 433 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 170/420 (40%), Positives = 248/420 (59%), Gaps = 10/420 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + + A+ GY + TPIQ K IP +L+ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFENLNIIKPIQRALTTEGYTEATPIQEKAIPSLLKGMDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + ++ R LIL PTRELA Q+AD+FE YGK+ L ++ GG+ Q K Sbjct: 61 QGLSSEQRNLKGSRQIQALILAPTRELAIQIADSFETYGKHLGLRTLVIYGGVSQHPQTK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+L+ TPGR+LD N+ + +N+I+ V+DEAD MLDMG I ++ I +P Sbjct: 121 SLNRGIDILVATPGRLLDLINQKFVRLNSIKYFVLDEADMMLDMGMIHDVRRIIKYIPAV 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+ FSATM E+ K+++ L+ P ++E+ SST + IE Y S K LL Sbjct: 181 RQTMFFSATMPAEIAKLADQILKEPVKVEITPVSSTVDIIEQAVY--YVNKSNKVQLLIH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+S+ + + ++F K + SLEK G AIHGN Q +R L+NFKE + Sbjct: 239 LLKSKAIV-SALVFSRTKHGADKIVKSLEKAGLQAQAIHGNKSQNARQLALNNFKERKTR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ HV NFD+P E Y+HRIGRTGRAG G A + A+E+ + Sbjct: 298 ILVATDIAARGIDVEELSHVINFDLPEVPETYVHRIGRTGRAGLGGIAISFCAQEEKNLL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 I+KLI K V + P +E ++ ++ RK++ P+ + +RR K S K Sbjct: 358 KEIQKLISKSVPVVEDHPF---PLVETLNESKEVFTRKSSA-PKTTPANNRRNKEASFAK 413 >gi|163800373|ref|ZP_02194274.1| hypothetical protein 1103602000595_AND4_06819 [Vibrio sp. AND4] gi|159175816|gb|EDP60610.1| hypothetical protein AND4_06819 [Vibrio sp. AND4] Length = 430 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 163/408 (39%), Positives = 247/408 (60%), Gaps = 15/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P+VV A+ + GY K TPIQ K IP+ + D+ AQTGTGKTA+F LPM+ Sbjct: 1 MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGFDIFATAQTGTGKTAAFSLPMI 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LE R+ R R L++ PTRELA Q+ADN + Y K +L+VA + GG +Q Sbjct: 61 QQLLESSRSVSRKTARALVMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQISA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H +G + + NI+ LV DEADR+LDMGFI ++ I V Sbjct: 121 LESGVDILVATPGRLEEHIEQGNVSVANIDFLVFDEADRILDMGFIHAVRKIMLDVDTNP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++++ L PKRIEV ++TA+TI H +K LL +L Sbjct: 181 QIMMFSATTSSQLNLLAKDILHKPKRIEVERANTTAQTIAHVLYPV--DQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ ++ L+ G HG+ Q +R + L FK G ++ Sbjct: 239 I-GRKNWRQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 298 MVATDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398 +E LI++++ + +L+ P +EK++ ++ R+NNP Sbjct: 358 QVENLIQQRIRRI--ELAGYEPKQRESYIEKLNSKPAFKNRQGRRNNP 403 >gi|85058891|ref|YP_454593.1| ATP-dependent RNA helicase RhlE [Sodalis glossinidius str. 'morsitans'] gi|84779411|dbj|BAE74188.1| putative ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans'] Length = 453 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 158/373 (42%), Positives = 242/373 (64%), Gaps = 9/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +V+ A+ + GY++PTP+Q + IP VLQ D+ AQTGTGKTA+F LP+L Sbjct: 1 MSFDSLGLSAEVLRALAEKGYLEPTPVQQQAIPYVLQGRDIMASAQTGTGKTAAFTLPIL 60 Query: 61 TILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L++ G+ R R R LIL PTRELAAQ+ +N +Y + L ++ GG+ Q Sbjct: 61 QLLDQRPAPAGKQR-RPIRALILTPTRELAAQIGENITEYSAHLGLRSLVVFGGVSINPQ 119 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL G +VL+ TPGR+LD + + ++ +EILV+DEADRMLDMGFI I+ + L+P Sbjct: 120 MMKLRGGVEVLVATPGRLLDLAQQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVMKLLP 179 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ+L+FSAT +DE++ ++ + L NP +EV ++ +E I FV + K+ LL Sbjct: 180 TKRQSLMFSATFSDEIKTLANSLLDNPASVEVARRNTASEQITQ-FVHMVDKKRKR-ELL 237 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ ++ + ++F K +L L K G + AIHGN Q +R + L++FK+G+ Sbjct: 238 SDMI-GRNNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKQGS 296 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+AARGLDI + HV N+++P AE+Y+HRIGRTGRA G+A +LV +++ Sbjct: 297 IRVLVATDIAARGLDIDLLPHVVNYELPQVAEDYVHRIGRTGRAAATGEALSLVCVDELG 356 Query: 356 HIDAIEKLIEKKV 368 + IE+L++K + Sbjct: 357 LLRDIERLLKKPI 369 >gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii SL3/3] Length = 641 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 157/375 (41%), Positives = 231/375 (61%), Gaps = 4/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV +AGY P+PIQ IP VL D+ G AQTGTGKTA+F LPML Sbjct: 1 MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L R + R LIL PTRELA Q+ ++FE YGK L ++ GG+ Q + L Sbjct: 61 DRLTANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G D+LI PGR+ D +G + ++ +EI V+DEADRMLDMGF+ ++ + + +P RQ Sbjct: 121 KKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM E+++++ L +P ++V+ SST + I+ Y + K LL L+ Sbjct: 181 NLMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLY--YVEKGNKKLLLPWLI 238 Query: 240 QS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ Q + N ++F K + L KQG AIHGN Q +R+ L +FK G ++ Sbjct: 239 KNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ HVFN+D+P E Y+HRIGRT RAG G A + A E+ +++ Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLA 358 Query: 359 AIEKLIEKKVDWLNG 373 IEKL +K+ ++G Sbjct: 359 GIEKLNRRKIPVVSG 373 >gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium prausnitzii A2-165] gi|257197409|gb|EEU95693.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium prausnitzii A2-165] Length = 641 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 158/375 (42%), Positives = 230/375 (61%), Gaps = 4/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS V+ AV AGY P+PIQ IP VL D+ G AQTGTGKTA+F LPML Sbjct: 1 MTFNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L R + R LIL PTRELA Q+ ++FE YGK L ++ GG+ Q L Sbjct: 61 DRLTASAPRKKGAIRALILTPTRELALQIGESFEAYGKYLTLRSTVIFGGVGQAPQVAAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G D+LI PGR+ D +G L ++NIEI V+DEADRMLDMGF+ ++ + + +P RQ Sbjct: 121 KKGVDILIACPGRLNDLVGQGLLDLSNIEIFVLDEADRMLDMGFVHDVKKVIAKLPRQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM E+++++ L +P ++V+ SST + I+ + + K LL L+ Sbjct: 181 NLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLY--FVEKGNKKFLLPWLI 238 Query: 240 QS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + + N ++F K + L KQG AIHGN Q +R+ L +FK G ++ Sbjct: 239 KNLKPEVVNALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKAGKTRV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ HVFN+D+P E Y+HRIGRT RAG G A + A E+ +++ Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEKEYLA 358 Query: 359 AIEKLIEKKVDWLNG 373 IEKL +++ ++G Sbjct: 359 GIEKLNRRQIPVVSG 373 >gi|313676359|ref|YP_004054355.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM 4126] gi|312943057|gb|ADR22247.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM 4126] Length = 413 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 158/368 (42%), Positives = 232/368 (63%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + ++ A+ + Y +PT IQ + IPL+LQ++D+ AQTGTGKTA+F +P+L Sbjct: 1 MRFEELNIIAPILRALKEENYSEPTSIQEQAIPLLLQKNDIMASAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LEK + + ++LIL PTRELA Q+ ++F YGK ++ ++ GG+ Q + Sbjct: 61 QHLEKDNSNSKKIKSLILTPTRELAIQIGESFTTYGKYTSIRNTVIFGGVNQNKQTAAIR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+LD N+G + + +I+ V+DEADRMLDMGFI I+ + +++P RQ+ Sbjct: 121 NGVDVLIATPGRLLDLMNQGFISLKDIQYFVLDEADRMLDMGFIHDIKKVIAVLPSKRQS 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM D + ++S L NPK+I V SSTAETI+ Y S K LL +L+ Sbjct: 181 LFFSATMPDTIVELSRKILINPKKIAVTPVSSTAETIQQYLY--YTNKSTKKDLLLHILK 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 M ++F K + L+K+ S AIHG+ Q R K L+ FK+ I+++V Sbjct: 239 D-SKMDQVLLFDRTKHGADRIVKELKKKNISAAAIHGDKAQNQRQKALTQFKDKEIRVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + +V NFD+PN AE Y+HRIGR+GRAG G + +L E+ ++ I Sbjct: 298 ATDIAARGIDIDKLQYVINFDIPNVAETYVHRIGRSGRAGEAGVSISLCEPEENDYLKDI 357 Query: 361 EKLIEKKV 368 EKLI +K+ Sbjct: 358 EKLINQKI 365 >gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 484 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 235/373 (63%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ + GY PT IQ + IPLVL HD+ AQTGTGKTA+F LP+L Sbjct: 25 MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 84 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L V R PR LIL PTRELA QV D+ Y K + A++ GG+ Q Sbjct: 85 QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 144 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+LI PGR++DH R + ++ IE+L++DEADRMLDMGF+P I+ I + +P Sbjct: 145 TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 204 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ F++NP +I+V ++ AE+I H ++K LL Sbjct: 205 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDG--ARKRDLLL 262 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL +QD+ + ++F K L LEK G AIHGN Q RM+ LS+FK G + Sbjct: 263 HLL-AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRV 321 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LVA+++ K Sbjct: 322 TVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKL 381 Query: 357 IDAIEKLIEKKVD 369 + I +++ + V+ Sbjct: 382 LRQIVRMLGRDVE 394 >gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426] gi|81675946|sp|Q5L3G9|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426] Length = 467 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 159/370 (42%), Positives = 234/370 (63%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +V+ A+ G+ + TPIQ KTIPL LQ DV G AQTGTGKTA+F +P I Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +EK + + L++ PTRELA QV++ K G + V + GG E Q + L++ Sbjct: 61 VEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGRI+DH NRG L + ++ +V+DEAD ML+MGFI I+ I S VP RQTLL Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ ++V T I+ ++ + + KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEK--KKFDILTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G++ IHG++ Q R+ +L FKEG I+++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V +I + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIER 357 Query: 363 LIEKKVDWLN 372 ++K++ + Sbjct: 358 TTKRKMERMK 367 >gi|298505039|gb|ADI83762.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400] Length = 446 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 167/410 (40%), Positives = 246/410 (60%), Gaps = 14/410 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF G P V V AGY PTPIQ + IP V+ DV G+AQTGTGKTA+F LP+L Sbjct: 1 MDFKSFGFHPAVSGGVAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L++G R RVR L++ PTRELA Q+ D+F G+ L + GG+ Q +KL Sbjct: 61 HRLQQGERGRVR---ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA+V++ PGR+LDH +G + ++ +E+LV+DEAD+M DMGF+P I+ + +P RQ Sbjct: 118 KAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPSRRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM +++ +++ L +P ++V + A T+ H + K LL +LL Sbjct: 178 TLLFSATMPIDIRALAQEILVDPVTVQVGN-VAPAVTVAHALYPV--EQHLKTPLLLELL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + DT ++ +IF K L LEK G+ ++ GN+ Q R L F++GT Q++ Sbjct: 235 RHTDT-ESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTYQIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV N+D+P+ AE YIHRIGRTGRA R G AFTLV +D + + Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRS 353 Query: 360 IEKLIEKKVD--WLNGDLSSLNPPLEKIDIA----QHNHARKNNPIPQKS 403 IE+ + ++ + G S+ P + ++ A + AR + P+K Sbjct: 354 IERSLGATIERRTVQGFDYSVPAPKKDVEFARPPREPRQARPHGSQPKKG 403 >gi|197337346|ref|YP_002157966.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] gi|197314598|gb|ACH64047.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] Length = 418 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 162/390 (41%), Positives = 244/390 (62%), Gaps = 9/390 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +++ V + G+ + TP+Q + IPLVLQ HDV AQTGTGKTA+F LP++ Sbjct: 1 MSFASLGLTEQILTTVAELGFKEATPVQKQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLI 60 Query: 61 T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 ++E R ++ R+LIL PTRELA QV D+ Y +N L V + GG Q Sbjct: 61 QRLIESPIERHEESKVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQK 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L GAD+LI TPGR+LDH + + +N E LV+DEADRMLDMGFIP I+ I +P Sbjct: 121 ENLLGGADILIATPGRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPD 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT + ++++++ L PK ++V +STA+T+E +K LL Sbjct: 181 ERQTLFFSATFSKKVREIAYYMLNKPKEVQVTPTNSTADTVEQMVYPV--DKHRKSELLA 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F K+ L L+K G +I+G+ Q +R++ L FK G + Sbjct: 239 YLIGSRN-WQQVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+++P +AE+Y+HRIGRTGRAG GKA +L++ ++ Sbjct: 298 RALIATDVAARGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAISLMSMDEEYL 357 Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEK 384 + AIE L++ ++ +WL G N PL++ Sbjct: 358 LKAIETLLDTRLPQEWLQGYEPDPNAPLKE 387 >gi|167625028|ref|YP_001675322.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167355050|gb|ABZ77663.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 437 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 164/407 (40%), Positives = 251/407 (61%), Gaps = 20/407 (4%) Query: 16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG----RARV 70 V GY +PT IQ + IP +L D+ AQTGTGKTA+F LP+L +++K +++ Sbjct: 40 VAQKGYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKA 99 Query: 71 RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130 + L+L PTRELA QV N +Y N +++ ++ GG+ +AQ KL G DV++ TP Sbjct: 100 KRASVLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATP 159 Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190 GR+LDH RG L +++IE LV DEADRMLDMGF+ I I +P RQTLLFSAT + Sbjct: 160 GRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSSA 219 Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250 + ++S+ LQ P RIEV+ +S A +IE A ++ +K LL L+ ++ + ++ Sbjct: 220 IFELSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSE--RKTELLCHLI-NKSAWQQVLV 276 Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310 F +K+ + + G A HG++ Q +R ++L++FK+G I+ +VA+D+AARGLD Sbjct: 277 FSRKKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLD 336 Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV-- 368 I ++ V N+++P AE+Y+HRIGRTGRAG GKA TL +++D ++ +E +I+K++ Sbjct: 337 IVELKVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEVESVIDKRLPQ 396 Query: 369 DWLNG---DLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKK 411 WL G DL+ L P K AQ A+K ++ G D+R++ Sbjct: 397 QWLEGFEPDLTKLEPVTRKNSKAAQRQRAKK------RALGADKRRR 437 >gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD2M] gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD2] gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD2] gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD2M] Length = 480 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 233/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAET+ +K LL Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans ATCC 17616] gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] Length = 480 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 233/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAET+ +K LL Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|330960515|gb|EGH60775.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 559 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 151/367 (41%), Positives = 235/367 (64%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L + Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHL 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|121997715|ref|YP_001002502.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira halophila SL1] gi|121589120|gb|ABM61700.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila SL1] Length = 403 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 158/373 (42%), Positives = 234/373 (62%), Gaps = 11/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F ++GLS +++ AV GY +PT IQ + IP VL DV AQTGTGKTA+F LP+L Sbjct: 1 MTFENIGLSQELLRAVAQQGYDQPTAIQAQAIPAVLGGGDVMASAQTGTGKTAAFTLPLL 60 Query: 61 -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 T ++G+ R+R L+L PTRELAAQV+++ YG++ L + GG P Q Sbjct: 61 QRLSDTAPQQGQRRIR---ALVLTPTRELAAQVSESVATYGRHLPLRSTEIYGGAPMGKQ 117 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L RG D+++ TPGR++DH +RG + + ++++L++DEADRMLDMGF P I+ I VP Sbjct: 118 TAALRRGVDIVVATPGRLIDHLDRGNVDLRHVDMLILDEADRMLDMGFKPAIERILKSVP 177 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT + + ++ FL P IE T ++ AE +E A + +K LL Sbjct: 178 NQRQTLLFSATFSGAVGGLARRFLNEPTVIEAGTANAAAEAVEQG--AYFVDAGRKRELL 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 QL+ D + ++F K+ L LE++G +IHG+ Q R + L+ FK + Sbjct: 236 TQLINDGD-WRQVLVFTRTKRGADRLAEQLEREGIRSQSIHGDKSQGQRGRALAAFKRKS 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VA+D+AARGLDI + HV N+D+PN E+YIHRIGRTGR G G+A++LV E+ Sbjct: 295 VRALVATDVAARGLDIAGLPHVVNYDLPNNPEDYIHRIGRTGRGGDSGEAWSLVGGEERG 354 Query: 356 HIDAIEKLIEKKV 368 AI++L+++++ Sbjct: 355 QFKAIQRLVKREI 367 >gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1] gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1] Length = 480 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 233/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R+ R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAET+ +K LL Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523] Length = 445 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 156/365 (42%), Positives = 235/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+P + A+ GY KPTPIQ K IPLVL+ DV AQTGTGKTA F LP++ Sbjct: 1 MQFSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGSDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ L +++ V+DEADRMLDMGFI ++ I L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ +FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSPEIKNLANDFLNNPQSVSADVVNTTVKKITQK-IYTLDKSTKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + QD + ++F K + L G + AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQD-LHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKEINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSN 357 Query: 360 IEKLI 364 IE LI Sbjct: 358 IEHLI 362 >gi|187736504|ref|YP_001878616.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187426556|gb|ACD05835.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 400 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 162/386 (41%), Positives = 238/386 (61%), Gaps = 16/386 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS V+ AV GY PTPIQ + IP++L+ D+ G +QTGTGKTA+F LP+L Sbjct: 1 MLFSELGLSEPVLKAVEKCGYEHPTPIQEQAIPIILEGRDLIGASQTGTGKTAAFALPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T ++ + P+ L+LEPTRELA QVA++F +YG+ L VALL GG+ + Q + L+ Sbjct: 61 TRIQP----IGKPQILVLEPTRELADQVAESFAEYGEFTGLKVALLYGGVGYGKQTEDLK 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179 +GAD+++ TPGR++DHF R + ++ LV+DE DRMLDMGF+P ++ I +L P+ RQ Sbjct: 117 KGADIVVATPGRLVDHFYRCTMRFGEVKALVLDEVDRMLDMGFLPIVRKIVNLCPWEGRQ 176 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSATM + ++ L +P + + A TI H F ++ LL LL Sbjct: 177 TLFFSATMPPVIAGFAKWCLTDPAEVTIAR-REVAATISHAFYPV--ALDQRDELLLALL 233 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D ++ +IF +K +C L+ G+ V +H +I Q+ RM+ L FK G Sbjct: 234 KGTD-FRSVMIFTRTRKEADAVCGMLKHHGYRGEVAVMHSDIPQKERMEALKGFKSGKYD 292 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI V HV N+ VP AE+Y+HRIGRTGRA G AFT++ +++ Sbjct: 293 ILVATDVAARGIDISGVTHVINYRVPENAEDYVHRIGRTGRAEASGDAFTIMTADELDFA 352 Query: 358 DAIEKLI-----EKKVDWLNGDLSSL 378 A+E I KK+D N ++L Sbjct: 353 AAVENFIGKPIERKKLDGFNYTYTAL 378 >gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916] gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916] Length = 449 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 158/371 (42%), Positives = 229/371 (61%), Gaps = 10/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS ++ A+ + GY P+PIQ + IP VL D+ AQTGTGKTA F LPML Sbjct: 17 FDDLGLSAPLLQALREKGYSTPSPIQEQAIPAVLSGRDLMAAAQTGTGKTAGFTLPMLET 76 Query: 63 LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L G R ++R L+L PTRELAAQV DN Y ++ L ++ GG+ Q ++ Sbjct: 77 LSHGARPGRGQIR---ALVLTPTRELAAQVLDNARDYSRHLRLRSEVVFGGVKINPQIQR 133 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G D+L+ TPGR+LD +G + +E LV+DEADRMLDMGFI I+ + S +P R Sbjct: 134 LQQGVDLLVATPGRLLDLHQQGAVRFERVEFLVLDEADRMLDMGFIHDIRRVLSRLPERR 193 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++K++ L +P +I++ P+ TA T++ V +K LL L Sbjct: 194 QNLLFSATFSPSIRKLATGLLNDPLQIQITPPNQTARTVQQ--VVHPCDMKRKPDLLSHL 251 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++S D + ++F K + L +G AIHGN Q +R + L FK+G++++ Sbjct: 252 IRSND-WQQVLVFSRTKHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQGFKDGSVRV 310 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV N D+PN AE+Y+HRIGRTGRAG G A +LVA E+ + Sbjct: 311 LVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGECGHAISLVAAEEALLLK 370 Query: 359 AIEKLIEKKVD 369 AIE+ + ++ Sbjct: 371 AIERTTRESLE 381 >gi|146302300|ref|YP_001196891.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium johnsoniae UW101] gi|146156718|gb|ABQ07572.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae UW101] Length = 415 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS + AV + GY+ PTPIQ K+IP+VL D+ G AQTGTGKTA+F +P++ Sbjct: 1 MLFEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPII 60 Query: 61 TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + + R LI+ PTRELA Q+ +F+ Y K NLT + GG+ Q Sbjct: 61 HQLHRIVGSSKKAKQIRALIVTPTRELAVQIGQSFDTYSKYTNLTQLTIFGGVSQNPQVD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ G DVL+ TPGR+LD +G L +N++ LV+DEAD+MLDMGFI ++ I L P Sbjct: 121 ALKNGVDVLVATPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM +++++E FLQ+P+++EV+ SSTAE +E + ++K LL + Sbjct: 181 RQTLLFSATMPLAIRELAEMFLQDPEKVEVSPVSSTAENVEQRVY--FVDKTEKRNLLYR 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ ++ + N ++F K N+ +L K+ AIHG+ Q +R ++L FK + Sbjct: 239 LIK-EENLSNVLVFSRTKHGADNVVKALRKKNIPAEAIHGDKSQNARQRVLDAFKNKEVG 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + +V NFD+PN E Y+HRIGRTGRAG G A + K++ + Sbjct: 298 VLVATDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDEEPYW 357 Query: 358 DAIEKLIEKKVD 369 I+KLI KVD Sbjct: 358 KDIKKLI--KVD 367 >gi|118602178|ref|YP_903393.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567117|gb|ABL01922.1| DEAD/DEAH box helicase domain protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 434 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 157/370 (42%), Positives = 240/370 (64%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF+ LGLS ++ A+ GY +P+ IQ + IP +L+ DV AQTGTGKTA F+LP+L Sbjct: 1 MDFSKLGLSDSILKAIEQQGYREPSLIQAQAIPAILEGKDVMAAAQTGTGKTAGFILPIL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 IL K + R LIL PTRELAAQV+D+ YGK + +++ GG+ Q +KL Sbjct: 61 EILSKCSPIKFNQVRMLILTPTRELAAQVSDSVTIYGKYLSFKSSVVFGGVKINPQMRKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD +++ + + +EI+V DEADRMLDMGFI I+ I ++P +Q Sbjct: 121 RDGVDILVATPGRLLDLYSKNAVKFDTLEIIVFDEADRMLDMGFIHDIKRILKILPQKKQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT +++++ ++++ + NP I V +ST +T++ ++ ++ KK ALL L+ Sbjct: 181 TLMFSATFSNDIRILAKSLVNNPVEISVTPRNSTVKTVKQ-WIHPVDKF-KKQALLIYLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + + ++F K + LEK+ S IHGN Q +R + L++FK + ++ Sbjct: 239 Q-EHSWYQVLVFSRTKHGANRIATQLEKKKISATVIHGNKSQGARTRALADFKNAKVNVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + HV NFD+P E+Y+HRIGRTGRAG G+A +LV+ ++ K + Sbjct: 298 VATDIAARGIDIDQLPHVVNFDLPRVPEDYVHRIGRTGRAGSKGEAISLVSVDEAKQLFD 357 Query: 360 IEKLIEKKVD 369 IE+LI+ K+D Sbjct: 358 IERLIQNKLD 367 >gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia vietnamiensis G4] gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis G4] Length = 486 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYTEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAET+ +K LL Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|322833775|ref|YP_004213802.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] gi|321168976|gb|ADW74675.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] Length = 470 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 161/371 (43%), Positives = 236/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +++ AV + GY +PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARV--RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L A+ R P R LIL PTRELAAQ+ +N + Y K L ++ GG+ Q Sbjct: 61 NMLSHTNAQFKGRRPVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVLI TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRLLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++ L NP +EV ++ + IE + +K LL Q Sbjct: 181 RQNLLFSATFSDEIKGLASKLLTNPASVEVARRNTASAQIEQSV--HFVDKKRKRELLSQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ D K ++F K +L L K G + AIHGN Q +R + L++FK G+++ Sbjct: 239 MIGEGD-WKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGSVR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIDMLPHVVNYELPNVPEDYVHRIGRTGRAEATGEAISLVCVDEHKLL 357 Query: 358 DAIEKLIEKKV 368 IE+L+++++ Sbjct: 358 RDIERLLKREI 368 >gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812] gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812] Length = 530 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R V+ L++ PTRELA Q + ++G+ + V + GG E Q K L Sbjct: 61 DKIDTSRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + ++E L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F+QNP+ ++V T + ++ ++ Q K + +L+ Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQ--DKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +G+ IHG++DQ R+++L +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKQGQSITFVAPNEMGYLSII 354 Query: 361 EKLIEKKVDWL 371 EKL +K++ L Sbjct: 355 EKLTKKRMKGL 365 >gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS] gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS] Length = 454 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP I+V ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIKVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia MC0-3] Length = 486 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAE++ +K LL Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp. laumondii TTO1] Length = 434 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 173/427 (40%), Positives = 256/427 (59%), Gaps = 14/427 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LGLS ++ AV + GY PTPIQ + IP+VL D+ AQTGTGKTA F LPML Sbjct: 7 MNFKSLGLSADILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML 66 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L KGR R R LIL PTRELAAQV +N Y K L ++ GG+ Sbjct: 67 QRLNDSPIQMKGR---RPVRALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINP 123 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + + Sbjct: 124 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKL 183 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +D+++ ++ L++P +EV +S +E IE + + +K L Sbjct: 184 PPKRQNLLFSATFSDDIKSLASKLLRDPVSVEVARRNSASEQIEQ--LVHFVDKKRKGEL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ S++ + ++F K L L K G + AIHGN Q +R + L++FK+G Sbjct: 242 LSFLIGSRN-WQQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKDG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + +V NF++PN AE+Y+HRIGRTGRA G+A +LV ++ Sbjct: 301 RIRVLVATDIAARGLDIDQLPYVVNFELPNVAEDYVHRIGRTGRADATGQALSLVCVDEH 360 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN--PIPQKSTGFDRRKKN 412 K + IE+L+++++ + +P ++ I AR +N + +G R+++ Sbjct: 361 KLLKDIERLLKREIPRMAIPGYEPDPTIKAEPIQNGRQARGDNRQKNSHRRSGAPSRQRS 420 Query: 413 YSSQKSH 419 S SH Sbjct: 421 SSHDVSH 427 >gi|50121729|ref|YP_050896.1| ATP-dependent RNA helicase RhlE [Pectobacterium atrosepticum SCRI1043] gi|49612255|emb|CAG75705.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 483 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 161/374 (43%), Positives = 237/374 (63%), Gaps = 10/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY PTP+Q + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KG+ R R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLTSREAQNKGKGR-RPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINP 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 120 QMMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKL 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV +S +E + + +K L Sbjct: 180 PAKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNSPSELVTQNV--HFVDKRRKREL 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L QL+ ++ + ++F K +L LEK G + AIHGN Q +R + L+NFK+G Sbjct: 238 LSQLI-GENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 297 GIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEH 356 Query: 355 KHIDAIEKLIEKKV 368 K + IE+L+++++ Sbjct: 357 KLLRDIERLLKREI 370 >gi|152999828|ref|YP_001365509.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|151364446|gb|ABS07446.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] Length = 411 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 175/410 (42%), Positives = 245/410 (59%), Gaps = 20/410 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+ +V + GY PTPIQ++ IP +L + DV A TGTGKTA+F LP+L Sbjct: 1 MSFSVLSLNSTLVNTLASLGYESPTPIQLEAIPTILAKRDVMAGAHTGTGKTAAFALPIL 60 Query: 61 ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + L++ A VR R L+L PTRELA QV +F KY K ++ V + GG+ +A Sbjct: 61 HHLLALSPLQELTA-VRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDA 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q G DVLI TPGR+LDH +G L + + +LV DEADRMLDMGF+ IQ + V Sbjct: 120 QVAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQV 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQTLLFSAT+ + +S+ L++PK IEV ++TA IE A A +K L Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDA--DRKTEL 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L++S++ +IF K+ V L L K A HG++ Q +R K+L FK+G Sbjct: 238 VSHLVRSKN-WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 IQ++VA+D+AARGLDI ++ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED Sbjct: 297 KIQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDA 356 Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 ++ +E +++K++ WL G P K+D R+N QK Sbjct: 357 LLLEEVEVVLDKRLPQQWLPG----FEPDFNKMD----TEPRRNGKAAQK 398 >gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC BAA-894] gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894] Length = 474 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 160/375 (42%), Positives = 238/375 (63%), Gaps = 14/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP+++ A+ + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L KGR VR LIL PTRELAAQV +N +Y K ++ ++ GG+ Sbjct: 61 QRLTANQPHPKGRRPVR---ALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G DVLI TPGR+LD ++ + ++ +E+LV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233 P RQ LLFSAT +D+++ ++E L NP+ +EV ++ +E + +H + +K Sbjct: 178 PPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVH---FVDKKRKRE 234 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ + ++F K +L L K G + AIHGN Q +R + L++FK Sbjct: 235 LLSYLI-GDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKT 293 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I+++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 294 GGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDE 353 Query: 354 IKHIDAIEKLIEKKV 368 K + IE+L+++++ Sbjct: 354 HKLLRDIERLLKREI 368 >gi|156740947|ref|YP_001431076.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156232275|gb|ABU57058.1| DEAD/DEAH box helicase domain protein [Roseiflexus castenholzii DSM 13941] Length = 450 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 153/365 (41%), Positives = 221/365 (60%), Gaps = 8/365 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F P++ + D GY PTPIQ + IP L DV GIAQTGTGKTA+FVLP+L Sbjct: 1 MSFEIFRFHPQINAGIRDLGYHTPTPIQEQVIPHALAGRDVIGIAQTGTGKTAAFVLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R RVR +I+ PTRELA Q+ E GK+ + L GG+ ++ Q ++L Sbjct: 61 HHLMRGPRGRVR---AMIVTPTRELAEQIQGVIEALGKHTGIRSVTLYGGVGYQGQIQRL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG ++ + PGR+LDH RG L ++++E+L +DEAD+M DMGF+P ++ I L P RQ Sbjct: 118 RRGVEIAVVCPGRLLDHLERGTLTLDHLEVLTLDEADQMFDMGFLPDVRRILRLAPVERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM D ++ ++ L++P +++ S+ T+ H K +LL +LL Sbjct: 178 TMLFSATMPDAVRSLAREALRDPLTVQIGR-SAPVATVTHAIYPVPEHL--KTSLLIELL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++ +IF K L +L + G+ ++HGN+ Q R L F+ G Q++ Sbjct: 235 ERTDA-ESVLIFTRTKHRAQRLGDTLARLGYRATSLHGNLSQNRRQAALDGFRSGRYQIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 A+D+AARG+D+ + HV N+D+P AE Y HRIGRTGRA R G AFTLV + D + A Sbjct: 294 TATDIAARGIDVARISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRGDTAMVRA 353 Query: 360 IEKLI 364 IE+LI Sbjct: 354 IERLI 358 >gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1] gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1] Length = 483 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 234/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ +V AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLAEPLVRAVNELGYNEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + R R LIL PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 QRLNAFQPANANGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + ++ ++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLAKLPA 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAETI +K +L Sbjct: 181 KRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKREMLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + LS FK GT+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKAGTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV N+++PN E+Y+HRIGRTGRAG +G+A +LV ++ Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKPL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense DSM 14796] gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense DSM 14796] Length = 531 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 165/383 (43%), Positives = 240/383 (62%), Gaps = 12/383 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ LS V A+ + G+ +P+ IQ +TIP+V+Q DV G AQTGTGKTA+F +P I Sbjct: 7 FGEIELSKDTVLALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIP---I 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +EK + R+P++L+L PTRELA QVA+ K K L V + GG E Q K L+ G Sbjct: 64 VEKT-TKDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKNG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVPFTRQTL 181 A V+I TPGR++DH RG L ++ I ILV+DEAD MLDMGFI I+ I S+ QTL Sbjct: 123 AQVIIGTPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D + +++ +++NPK + ++ T + Y + K L ++L++ Sbjct: 183 LFSATMPDPIMALTKKYMKNPKVVSISKEQLTVPLTDQF----YCEAKDKLEALCRILET 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D M IIFC KK V L SL +G+S +HG++ Q R K++ +F+E ++++VA Sbjct: 239 ED-MDKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI DV HV NFD+P E+Y+HRIGRTGRAG+ G A T + + + + IE Sbjct: 298 TDVAARGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLRLIE 357 Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384 K+I + ++ S++ LEK Sbjct: 358 KVIRTTIK--RKEVPSISDLLEK 378 >gi|163800537|ref|ZP_02194438.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp. AND4] gi|159175980|gb|EDP60774.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp. AND4] Length = 416 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 160/398 (40%), Positives = 251/398 (63%), Gaps = 9/398 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++FADLG++ ++V + V PTP+Q K+IP +L+ D+ AQTGTGKTA+F LP++ Sbjct: 3 VNFADLGIAQQLVDTLSGMNIVTPTPVQEKSIPHILEGKDLLAAAQTGTGKTAAFGLPII 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ + R P+ LIL PTRELA QV DN +Y N NL + + GG Q KKLE Sbjct: 63 QSVQQNK-RDGAPKALILVPTRELAQQVMDNLIQYSANTNLNIVCVYGGTSIGVQKKKLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+LI TPGR+LDH G +++ ILV+DEADRMLDMGF P +Q I +P +QT Sbjct: 122 EGADILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT + ++ ++ + P +EV+ ++TAE ++ +K LL L+ Sbjct: 182 MLFSATFEERIKTIAYKLMDTPIEVEVSPANTTAENVKQMVYPV--DKKRKRELLAYLIG 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++F K+ L L+ G +I+G+ Q +R + L +FKEG ++ ++ Sbjct: 240 SRN-WQQVLVFTKTKQGSDELVKELKLDGIKAVSINGDKSQGARQRALDDFKEGKVRALI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++ ++ + AI Sbjct: 299 ATDVAARGLDIQALEQVVNFDLPFKAEDYVHRIGRTGRAGKSGLAVSLMSHDEEYLLTAI 358 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKN 396 E L++K++ +WL G SL +E+++ +++ RK+ Sbjct: 359 ENLLDKRLPQEWLEGFEPSL---IEEVEPERNSGGRKS 393 >gi|222149464|ref|YP_002550421.1| ATP-dependent RNA helicase [Agrobacterium vitis S4] gi|221736447|gb|ACM37410.1| ATP-dependent RNA helicase [Agrobacterium vitis S4] Length = 484 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 156/374 (41%), Positives = 229/374 (61%), Gaps = 4/374 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLSP VV + G+ PTPIQ + IP+V+ D+ G+AQTGTGKTA+F LP++ + Sbjct: 20 FNELGLSPTVVATLTQLGFETPTPIQAQGIPVVMAGRDLIGLAQTGTGKTAAFGLPIIEL 79 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R R RTLIL PTREL Q+ DN + + + + ++GG Q +LE Sbjct: 80 LMKDERRPDNRTTRTLILAPTRELVNQIGDNLRSFIRKTPIKINQVVGGASINKQQLQLE 139 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD +R + + + LV+DEAD+MLD+GFI ++ I +VP RQT Sbjct: 140 RGTDILVATPGRLLDLISRNAISLRAVTHLVLDEADQMLDLGFIHDLRKIAKMVPAKRQT 199 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ +FL NP +EV+ P A+ +E +V + K LL++ L Sbjct: 200 LLFSATMPKAIADLAGSFLNNPVTVEVSPPGKAADKVEQ-YVHFVNGQNHKTELLKKTLA 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+F K L LE GFSV +IHGN Q R + L F++G+I+ ++ Sbjct: 259 DHPDGRS-IVFLRTKHGAEKLMKHLEITGFSVASIHGNKSQGQRERALKGFRDGSIRTLI 317 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIP V HVFN+D+P + Y+HRIGRT RAGR G A ++ + + I Sbjct: 318 ATDVAARGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEARLLRDI 377 Query: 361 EKLIEKKVDWLNGD 374 E+L+ ++ +G+ Sbjct: 378 ERLMGIEISVASGE 391 >gi|138893877|ref|YP_001124330.1| DEAD-box ATP dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus thermodenitrificans NG80-2] Length = 467 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 162/381 (42%), Positives = 241/381 (63%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +V+ A+ G+ + TPIQ KTIPL LQ DV G AQTGTGKTA+F +P I Sbjct: 4 FQELGLSKEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +EK + + + L++ PTRELA QV++ K G + V + GG E Q + L++ Sbjct: 61 VEKVDVKNGVIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGRI+DH NRG L + ++ +V+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ +P+ ++V T I+ ++ + + KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEK--KKFDILTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G++ IHG++ Q R+ +L FKEG+I+++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V +I + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K++ + +LN LE Sbjct: 358 TTKRKMERMKP--PTLNEALE 376 >gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520] Length = 454 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 236/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +++++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSNDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|187733875|ref|YP_001881017.1| ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94] gi|187430867|gb|ACD10141.1| putative ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94] gi|320175218|gb|EFW50327.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112] gi|320183285|gb|EFW58140.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83] gi|332097530|gb|EGJ02510.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74] Length = 454 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 235/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem] gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem] Length = 453 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 167/415 (40%), Positives = 240/415 (57%), Gaps = 10/415 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L LS ++ A+ GY +PTPIQ ++IPL L D+ G AQTGTGKTASFVLP L Sbjct: 1 MSFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L R + PR L+L PTRELA QV D YGK + ++GG+P+ Q L Sbjct: 61 ERLLTPSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++DH +R + + +E+LV+DEADRMLDMGF + I + P RQ Sbjct: 121 AQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIANAAPAERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLF+ATM D + K+++ L++P R+ V IE T K LLQ L+ Sbjct: 181 TLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVT-DDMRHKNRLLQHLV 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S ++ IIF KK+ L L QG + A+HG++ Q +R K ++ + G ++L+ Sbjct: 240 -SDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKVRLL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P AE+Y+HRIGRTGRAG G A + + ++ ++D Sbjct: 299 VATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVVYLDR 358 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 IE+ KK+ + PL + + ARK P FD RKK ++ Sbjct: 359 IERFTGKKLPMHVVEGFEPTRPLRRGNSGAPG-ARKGRP------SFDPRKKGFA 406 >gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase domain-containing protein [Clostridium phytofermentans ISDg] gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans ISDg] Length = 514 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 158/364 (43%), Positives = 234/364 (64%), Gaps = 5/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F ++ L ++ A+ + G+++P+PIQ KTIPLVL+ D+ G AQTGTGKTA+F LP+L Sbjct: 1 MNFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L KG R LI+ PTRELA Q+ ++FE +GK +L +++ GG+ Q L+ Sbjct: 61 QSLSKGEGS--GVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+ D +G + ++ IE+ V+DEAD+MLDMGF+ I+ + L+P TRQT Sbjct: 119 AGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++ ++ N L NP+ I+++ +ST ++IE + K +LL L++ Sbjct: 179 LLFSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVY--FVDRLNKISLLTSLIK 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + M ++F K + L K AIHG Q +R LS+FKEG I+++V Sbjct: 237 -EHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ +V N+D+PN+AE YIHRIGRTGRAG G A L +D+ ++ I Sbjct: 296 ATDIAARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREI 355 Query: 361 EKLI 364 EK I Sbjct: 356 EKHI 359 >gi|254422154|ref|ZP_05035872.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335] gi|196189643|gb|EDX84607.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335] Length = 469 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 165/404 (40%), Positives = 241/404 (59%), Gaps = 39/404 (9%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL +++ A+ D GY PTPIQ+++IPLV+ HDV AQTGTGKTA F LP+L Sbjct: 2 MSFESLGLRTEILRAIADQGYTDPTPIQVQSIPLVIAGHDVMASAQTGTGKTAGFTLPLL 61 Query: 61 T-------------------------------ILEKGRARV-----RMPRTLILEPTREL 84 IL K + V R R LI+ PTREL Sbjct: 62 QRLCEGLPLQTSPTRNQTSIRSDASRNGTSRPILRKRKGSVSRGDHRPIRALIVTPTREL 121 Query: 85 AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144 AAQ+ +N Y K + ++ GG+ Q KL +G D+LI TPGR+LDH + + + Sbjct: 122 AAQIGENVNAYSKYLPVRSTVIFGGVKINPQISKLRQGVDILIATPGRLLDHVGQRTVDL 181 Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204 + +E+LV+DEADRMLDMGFI I+ I +LV RQTLLFSAT + ++K++++FL++PK Sbjct: 182 SQVEVLVLDEADRMLDMGFIHDIRKILALVSEERQTLLFSATFSKPIKKLADSFLRSPKT 241 Query: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264 IEV ++TA+T++ V +K LL ++ S++ + ++F K L Sbjct: 242 IEVARQNATADTVDQ--VVYPVDRVRKSELLSFIIGSRN-WQQVLVFTRTKHGANRLTKH 298 Query: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324 L+K G + AIHGN Q +R + L+ FK ++++VA+D+AARGLDI + HV NF++PN Sbjct: 299 LQKDGLTAAAIHGNKSQGARTRALAAFKARDVRVLVATDIAARGLDIDLLPHVVNFELPN 358 Query: 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 AE+Y+HRIGRTGRAG G+A +LV ++ + IE+L+ + + Sbjct: 359 VAEDYVHRIGRTGRAGNEGQAVSLVCVDEKDLLRGIERLLRRDI 402 >gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans ATCC 23270] Length = 418 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 233/372 (62%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS + A + GY PTPIQ + IP+V+ D+ AQTGTGKTA+F +P+L Sbjct: 4 FESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHK 63 Query: 63 LE--KGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L G A R P R LIL PTRELAAQV + + YG+ L +LIGG+ Q + Sbjct: 64 LAVTAGSAS-RAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQMQ 122 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL R D+L+ TPGR+LDH + + ++++EILV+DEADRMLDMGFI I+ I +++P Sbjct: 123 KLRRSVDILVATPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLPKK 182 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT + E++ +++ L NP +EV ++TA+ + A +K LL Sbjct: 183 RQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAV--DQDRKRELLSH 240 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ + ++F K L L + G AIHG+ Q +R + L+ FKEG +Q Sbjct: 241 LIE-EHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQ 299 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ HV NF++P+ E+Y+HRIGRTGRAG +G+A +LV+ E+ K + Sbjct: 300 VLVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQL 359 Query: 358 DAIEKLIEKKVD 369 +EKL+ + D Sbjct: 360 QDVEKLLRRSFD 371 >gi|260866964|ref|YP_003233366.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128] gi|257763320|dbj|BAI34815.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128] gi|323175585|gb|EFZ61180.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1180] Length = 454 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 235/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 CVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16] gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16] Length = 467 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 162/381 (42%), Positives = 240/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +V+ A+ G+ + TPIQ KTIPL LQ DV G AQTGTGKTA+F +P I Sbjct: 4 FQELGLSKEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +EK + + L++ PTRELA QV++ K G + V + GG E Q + L++ Sbjct: 61 VEKVDVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGRI+DH NRG L + ++ +V+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ +P+ ++V T I+ ++ + + KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEK--KKFDILTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G++ IHG++ Q R+ +L FKEG+I+++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V +I + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K++ + +LN LE Sbjct: 358 TTKRKMERMKP--PTLNEALE 376 >gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N] gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N] Length = 592 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 159/377 (42%), Positives = 230/377 (61%), Gaps = 18/377 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLSP ++ A+ G+ +PTP+Q IP + D+ +QTG+GKTA+F+LP L Sbjct: 1 MSFADLGLSPTILSAIEATGFSEPTPVQAAAIPRAMAGADLMVSSQTGSGKTAAFMLPAL 60 Query: 61 TILEKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFE 113 R + P + L+L PTRELA QVAD YG N L ++GG+P+ Sbjct: 61 N-----RVAGQSPNKGVGVQILVLTPTRELALQVADATATYGANLPGLRTTTVVGGVPYG 115 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 AQ K L R DVL+ TPGR++DH G++ +N + LV+DEADRMLDMGFI I+ I Sbjct: 116 AQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIER 175 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKC 232 +P +RQTLLFSAT+ + +++E ++ P+RIE+ I + YA S K Sbjct: 176 LPQSRQTLLFSATLDGSVARLAEKMMREPERIEIAGHRDKHANITQSLL--YADDASHKM 233 Query: 233 ALLQQLLQSQDT-MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL LL+ DT + I+F K+ +L L +QGFS A+HG+++QR R + L+ Sbjct: 234 RLLDHLLR--DTRLDQAIVFTATKRGADDLADRLSEQGFSAAALHGDMNQRQRTRTLTQL 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G ++++VA+D+AARG+D+ + H NFD+P +AE+Y+HRIGRTGRAGR G A+TL Sbjct: 292 QRGQVRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGLAYTLAVH 351 Query: 352 EDIKHIDAIEKLIEKKV 368 + + IE I + + Sbjct: 352 SERHKVRRIEHYIGQTI 368 >gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054] gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia HI2424] gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU 1054] gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia HI2424] Length = 486 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAE++ +K LL Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|319902651|ref|YP_004162379.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] gi|319417682|gb|ADV44793.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] Length = 422 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 157/368 (42%), Positives = 231/368 (62%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ + GY PTPIQ K+IP++LQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R + + LIL PTRELA Q+ ++FE YGK L ++ GG+ + Q L+ Sbjct: 61 QKLYKTDNR-KGIKALILTPTRELAIQIGESFEAYGKYTGLKHTVIFGGVGQKPQTDDLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +LI TPGR+ D N+G + + ++ V+DEADRMLDMGFI I+ I ++P RQT Sbjct: 120 RGTQILIATPGRLQDLVNQGFINLKTLDFFVLDEADRMLDMGFIHDIRRILKMLPTQRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++ ++ + L NP ++EV SST +TI + + +K LL LL+ Sbjct: 180 LFFSATMPSEIETLANSMLSNPAKVEVTPVSSTVDTISQSVY--FVEKKEKKDLLIHLLK 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +++ ++F K L L K G S AIHGN Q +R + L+ FK TI++++ Sbjct: 238 N-TAIESVLVFTRTKYGADKLARILSKSGISAEAIHGNKSQNARQRALTGFKSHTIRVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVEQLSHVINYELPNVPETYVHRIGRTGRAGHEGTALSFCESEELPYLKDI 356 Query: 361 EKLIEKKV 368 +KLI K + Sbjct: 357 QKLIGKTI 364 >gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 526 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ V AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSENILATVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R V+ L++ PTRELA Q + ++G+ + V + GG E Q K L Sbjct: 61 DKIDTNRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++++E L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F+QNP+ ++V T + ++ ++ Q K + +L+ Sbjct: 178 LLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQ--DKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L L+ +G+ IHG++DQ R+++L +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+HG++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354 Query: 361 EKLIEKKVDWL 371 EKL +K++ L Sbjct: 355 EKLTKKRMKGL 365 >gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM 2048] gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603] gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603] gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM 2048] Length = 538 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 162/381 (42%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIF K+ V L +L +G++ IHG++ Q RM +L FKEGTI+++VA+ Sbjct: 239 -SPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++KVD + D +L+ LE Sbjct: 358 TTKRKVDRM--DAPTLDEALE 376 >gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] Length = 438 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 229/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGL+P + A+ AGY PTP+Q +IP L HD+ AQTG+GKTA+F+LP L Sbjct: 1 MHFADLGLAPAITSALDAAGYTTPTPVQAASIPAALAGHDLLVSAQTGSGKTAAFLLPSL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 L E+ + PR L+L PTRELA QV N +YG L L+GG F Q + Sbjct: 61 QKLTERSTGSGQGPRILVLTPTRELAQQVEKNATEYGSQLRWLRTVCLVGGASFGYQIRA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + R D+++ TPGR++DH G++ + +E+L++DEADRMLDMGFI I+ I P +R Sbjct: 121 MARPVDIMVATPGRLMDHMRSGRIDFSRLEMLILDEADRMLDMGFIEDIETIVKATPDSR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT+ + K+++ ++P+RIE+ + EH A ++ ++ LL + Sbjct: 181 QTVLFSATLDGTVGKLAQKLTRDPQRIEIAREETGGNIEEHLLYADDNRHKER--LLDHI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + +IF K L L QG++ +HG++ Q R + L++ + G +++ Sbjct: 239 LK-EAGFDQAVIFTATKIGSEELADKLSDQGYAAACLHGDMPQNWRNRTLNDLRRGRVRI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A TL ++ + Sbjct: 298 LVATDVAARGIDVPTITHVVNYDLPKQAEDYVHRIGRTGRAGRDGVAITLAESKEFHKVR 357 Query: 359 AIEKLIEKKV 368 IE+ +++++ Sbjct: 358 RIEQYLKRQI 367 >gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM 17241] gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM 17241] Length = 572 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 158/381 (41%), Positives = 237/381 (62%), Gaps = 14/381 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D+GLSP++V AV D Y + T IQ + IPL++Q DV G + TGTGKTA+F +P + Sbjct: 6 FEDIGLSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPAVER 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 +E G ++ P+ L+L PTRELA Q+AD K+ K + VA + GG P +AQ + L R Sbjct: 66 IESG---LKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRAL-R 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 A+++I TPGR++DH R L ++++ +V+DEAD ML+MGF+ IQ I + P TRQT+ Sbjct: 122 AANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDTRQTV 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + K+++ FL +P+ +++ T T +E F ++K L LLQ Sbjct: 182 LFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFY--RVPQARKMDALNLLLQY 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D K ++FCN K V +L L GF IHG++ Q R +++ +F++G +++VA Sbjct: 240 HDP-KRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ ++ VFNFD+P E+YIHRIGRTGRAGR G + TLV + +D I Sbjct: 299 TDVAARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGA--RQVDTIR 356 Query: 362 KLIEKKVDWLNGDLSSLNPPL 382 +L ++N D+ P+ Sbjct: 357 QLRR----FINADIREAPLPI 373 >gi|253996648|ref|YP_003048712.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera mobilis JLW8] gi|253983327|gb|ACT48185.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8] Length = 459 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 165/405 (40%), Positives = 256/405 (63%), Gaps = 11/405 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL+P+++ A+ ++GY PTPIQ + IP+ L D+ AQTGTGKTA+F LP+L Sbjct: 12 FSTLGLAPELLRALTESGYTTPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFSLPLLQK 71 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L P R LIL PTRELA QV ++ + Y K+ L ++ GG+ + Q Sbjct: 72 LLPLANNSTSPAKHPVRALILTPTRELAIQVEESVKAYAKHTQLRSLVVYGGVDIKTQTP 131 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ G +VL+ TPGR+LDH + L +N +++LV+DEADRMLDMGF+P ++ I +L+P Sbjct: 132 HLKTGVEVLVATPGRLLDHIEQKTLQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPKQ 191 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ L+FSAT ++E++K++++FL P+ IEV ++T + + V AQ S K ALL Q Sbjct: 192 RQNLMFSATFSNEIKKLADDFLTKPQLIEVARSNATNDNVTQK-VYQVAQ-SDKEALLIQ 249 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ D K I+F K L SL ++G + AIHG+ +Q+ R+K L FK GT+ Sbjct: 250 LLREADA-KQVIVFTKTKLTASRLSRSLVREGIAADAIHGDKNQQERIKALDAFKAGTVS 308 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++A+D+AARGLDI ++ V N+++P+ E+Y+HRIGRTGRAG G A + V+ ++ K++ Sbjct: 309 ALIATDVAARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGVAISFVSDDEEKYL 368 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 IEKLI++++ + +L+ P ++ +H P+ ++ Sbjct: 369 VEIEKLIKRQI---TKETVTLDRPSARVRSHASSHKEAAAPVAKR 410 >gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia J2315] gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia J2315] Length = 477 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAE++ +K LL Sbjct: 181 QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|323699639|ref|ZP_08111551.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132] gi|323459571|gb|EGB15436.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans ND132] Length = 369 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 156/369 (42%), Positives = 229/369 (62%), Gaps = 6/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L +++ V D GY PTPIQ + IPLVL+ HDV G+AQTGTGKTA+F LP+L Sbjct: 1 MTFSTFSLDRRILAGVRDCGYETPTPIQEQAIPLVLKGHDVMGLAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R +P L+L PTRELA Q+ +NF + G++ + +IGG+ Q K Sbjct: 61 QRLLTGNKSGRALPSVLVLAPTRELALQIDENFNQLGRHTGIRCGAVIGGVGMNPQIKAF 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 V++ PGR++ N G + + +I+ LV+DEADRMLDMGF+P I+ I + +P RQ Sbjct: 121 SH-CRVIVACPGRLVRLLNNGSVSLTHIDTLVLDEADRMLDMGFMPDIKRILAKLPARRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM +++K++EN L +PK ++V + E++EH F AT + ++K LL +LL Sbjct: 180 NLLFSATMPQDIRKLAENILNDPKTVQVAN-TQPVESVEHSFYAT--ENNRKSELLTKLL 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++F K NL L G++ + GN+ Q R + L F++G+ +M Sbjct: 237 DRAE-HQSVLVFTKTKHKAKNLARKLAGSGYNATFLQGNMSQNQRQRALDGFRDGSYDIM 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D + HV NFD+P+ E Y HRIGRTGRAGR G A +LV ED + Sbjct: 296 VATDIAARGIDCERISHVINFDMPDTVETYTHRIGRTGRAGRSGHAVSLVTGEDKTQVRD 355 Query: 360 IEKLIEKKV 368 IE+++ K+ Sbjct: 356 IERVMRVKL 364 >gi|259909026|ref|YP_002649382.1| ATP-dependent RNA helicase RhlE [Erwinia pyrifoliae Ep1/96] gi|224964648|emb|CAX56162.1| Putative ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96] gi|283479042|emb|CAY74958.1| putative ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM 12163] Length = 471 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 160/375 (42%), Positives = 239/375 (63%), Gaps = 14/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQV +N + Y K ++ ++ GG+ Sbjct: 61 QLLSSHNPHPKGR---RPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G DVL+ TPGR+LD ++ L ++ +EILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233 P RQ LLFSAT +DE++ ++E L NP+++EV ++ +E + +H + K+ Sbjct: 178 PAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD----KKRKR 233 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L LL + + ++F K +L L K G + AIHGN Q +R + LS+FK+ Sbjct: 234 ELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKD 293 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I+++VA+D+AARG+DI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 294 GKIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDE 353 Query: 354 IKHIDAIEKLIEKKV 368 K + IE+++++++ Sbjct: 354 HKLLRDIERVLKREI 368 >gi|292487709|ref|YP_003530582.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora CFBP1430] gi|292898944|ref|YP_003538313.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946] gi|291198792|emb|CBJ45901.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946] gi|291553129|emb|CBA20174.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora CFBP1430] gi|312171822|emb|CBX80079.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora ATCC BAA-2158] Length = 470 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 160/375 (42%), Positives = 239/375 (63%), Gaps = 14/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQV +N + Y K ++ ++ GG+ Sbjct: 61 QLLSSHNPHPKGR---RPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G DVL+ TPGR+LD ++ L ++ +EILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233 P RQ LLFSAT +DE++ ++E L NP+++EV ++ +E + +H + K+ Sbjct: 178 PAKRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD----KKRKR 233 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L LL + + ++F K +L L K G + AIHGN Q +R + LS+FK+ Sbjct: 234 ELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKD 293 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I+++VA+D+AARG+DI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 294 GKIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDE 353 Query: 354 IKHIDAIEKLIEKKV 368 K + IE+++++++ Sbjct: 354 HKLLRDIERVLKREI 368 >gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] Length = 642 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 156/381 (40%), Positives = 232/381 (60%), Gaps = 9/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL +V+ ++ D GY KP+PIQ TIPL+L+ DV G+AQTGTGKTA+F LP L+ Sbjct: 22 FSELGLDARVLASLADLGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPALSR 81 Query: 63 ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L + P+ L+L PTRELA QVA+ F Y K N TV + GG P+ Q Sbjct: 82 MAELADTNGPAKTPQILVLAPTRELALQVAEAFTSYAKYLPNFTVLPVYGGSPYGPQLNG 141 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGA V++ TPGR++DH N+G L ++N++ +V+DEAD ML MGF + I P + Sbjct: 142 LRRGAQVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDK 201 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM +++++ +L+NP+ + V + ST I ++ + K + ++ Sbjct: 202 QVALFSATMPRTIRRIASEYLRNPQEVAVKSKQSTGTNITQRYLQVMGAH--KLDAMTRI 259 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+S+ T + I F K +L L+ +GF+ AI+G+I Q+ R + + N + G I + Sbjct: 260 LESE-TFEGVIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDI 318 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV NFD+P+ E+Y+HRIGRTGRAGR G A + + + Sbjct: 319 LVATDVAARGLDVERISHVVNFDIPHDTESYVHRIGRTGRAGRKGDAILFMTPREKYLLR 378 Query: 359 AIEKLIEKKVDWLNGDLSSLN 379 AIEK + V + L SL+ Sbjct: 379 AIEKATRQPVTQMQ--LPSLD 397 >gi|126173490|ref|YP_001049639.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|125996695|gb|ABN60770.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 411 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 174/410 (42%), Positives = 247/410 (60%), Gaps = 20/410 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+ K+V + G+ PTPIQ++ IP +L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSVLSLNSKLVNTLASLGFESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL 60 Query: 61 ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + L++ A V+ R L+L PTRELA QV +F KY K ++ V + GG+ +A Sbjct: 61 HHLLALSPLQELTA-VKPIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDA 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q G DVLI TPGR+LDH +G L + + +LV DEADRMLDMGF+ IQ + V Sbjct: 120 QVAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQV 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQTLLFSAT+ + +S+ L++PK IEV ++TA IE A A +K L Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDA--DRKTEL 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L++S++ +IF K+ V L L K A HG++ Q +R K+L FK+G Sbjct: 238 VSHLVRSKN-WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 IQ++VA+D+AARGLDI ++ +V NF++P AE+YIHRIGRTGRAG G A TL ++ED Sbjct: 297 KIQVLVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDA 356 Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 ++ +E +++K++ WL G P K++ R+N QK Sbjct: 357 LLLEEVEVVLDKRLPQQWLPG----FEPDFNKME----TEPRRNGKAAQK 398 >gi|89074347|ref|ZP_01160829.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34] gi|89049834|gb|EAR55375.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34] Length = 455 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 155/365 (42%), Positives = 224/365 (61%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL+ +V AV + GY PTPIQ K IP+ L ++ AQTGTGKTA FVLP+L Sbjct: 1 MPFSKLGLNDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTAGFVLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ G + R + R LIL PTRELA QV DN ++Y K+ NL + GG+ +E Q ++L Sbjct: 61 QMLDDGTKVRAKRIRALILAPTRELAVQVEDNIKQYSKHLNLASMAMYGGVDYEPQKRRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + IE LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTKRAIHFDAIETLVLDEADRMLDMGFIEDINKIVERLPVDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSAT++D+++ +++ ++NP I V +S I+ V K ALL L+ Sbjct: 181 NMLFSATLSDQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTV--DKDMKSALLSSLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q Q +IF K L LEK+G S + H Q R ++L +FK G +Q + Sbjct: 239 QEQ-KWDQALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ +A+RG+DI + V N+D+P E Y+HRIGRTGRAG G+A + V++++ K++ Sbjct: 298 IATGVASRGIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSRDNFKNLCM 357 Query: 360 IEKLI 364 IE L+ Sbjct: 358 IESLL 362 >gi|238920509|ref|YP_002934024.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146] gi|238870078|gb|ACR69789.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146] Length = 440 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 167/420 (39%), Positives = 255/420 (60%), Gaps = 10/420 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL +++ AV + GY +PTPIQ + IP+VLQR D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLCAELLRAVEEQGYREPTPIQQQAIPVVLQRRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L + G+ R R R LIL PTRELAAQ+ +N +Y ++ L ++ GG+ Q Sbjct: 61 QLLHQNPKSGKGR-RPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQM 119 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 120 MKLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPA 179 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 RQ LLFSAT +DE++ ++ + L NP +EV ++ +E + +H + +K LL Sbjct: 180 KRQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELVTQHVHL---VDKKRKRELL 236 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ ++D + ++F K +L L K G S AIHGN Q +R + L++FK G Sbjct: 237 SFLIGTRD-WRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGD 295 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+AARGLDI + +V N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 296 IRVLVATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHK 355 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 + IE+L+++ + + +P ++ I + N + +G RR + S Sbjct: 356 LLRDIERLLKRPIPRMAIAGYEPDPSIKAEPIQNGRQGGRQNSGRTERSGQGRRAEGQRS 415 >gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus DSM 20745] Length = 526 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 155/360 (43%), Positives = 224/360 (62%), Gaps = 6/360 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ A+ G+ +PTPIQ + IPL+L D+ AQTGTGKTA+F LP I Sbjct: 4 FADLGLSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E+ + R P+ L+L PTRELA QVA F + G+ + V + GG P E Q + L Sbjct: 61 IERLQPNGRRPQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALRHP 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +V++ TPGR++DH R L ++N+ +VIDEAD MLDMGFI ++ I VP RQT L Sbjct: 121 VEVVVGTPGRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQTAL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ D + ++ +L++P R+ V T IE +V Q +K AL + L Sbjct: 181 FSATIPDRVAALARRYLRDPARVAVEPERVTVPQIEQTYVEVV-QRAKVEALTRIL--DM 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +T + IIFC K+ V L L+ G++ A+HG++ Q R ++++ F+ G +L++A+ Sbjct: 238 ETPPSAIIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLIAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A TLV + + + IE+ Sbjct: 298 DVAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREIER 357 >gi|218676343|ref|YP_002395162.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32] gi|218324611|emb|CAV26155.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32] Length = 428 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 168/419 (40%), Positives = 253/419 (60%), Gaps = 13/419 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P++V A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFSSQGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L G+ R R LIL PTRELAAQ+A N + Y K L+V+ + GG +Q ++ Sbjct: 61 QHLLNSGKKASRGTARGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQ 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H G + + N+E LV DEADR+LDMGFI ++ I V + Sbjct: 121 LELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++S + L+ PKRI V +STA T+ H V +K LL +L Sbjct: 181 QIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAATVGH--VVYPVDQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ ++ L+ G HG+ Q +R + L +FKEG ++ Sbjct: 239 I-GRKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGRARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 298 MVATDVAARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAISFVNREEELTVV 357 Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNP--IPQKSTGFDRR 409 +EKLI+ ++V+ + + +EK++ ++ RKNN PQ +RR Sbjct: 358 QVEKLIQQRIRRVEQPGYEPKKRDAYIEKLNTKSAYKNRQGRKNNANEEPQDQASAERR 416 >gi|145219726|ref|YP_001130435.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205890|gb|ABP36933.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeovibrioides DSM 265] Length = 412 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 156/370 (42%), Positives = 231/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L + ++ A+ + GY PTPIQ + IP+VL+ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MQFSSLHIIDPILQALQEEGYSHPTPIQAEAIPVVLKGGDILGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + R R++ R+LI+ PTRELA Q+ ++F YG++ LT ++ GG+ Q + Sbjct: 61 QRLGESRVQGRIKKIRSLIVTPTRELAIQIGESFSAYGRHTPLTNTVIFGGVNQNPQISR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+L+ TPGR+LD N+G + ++++EILV+DEADRMLDMGFI I+ + + +P + Sbjct: 121 LKNGVDILVATPGRLLDLMNQGFINLHDVEILVLDEADRMLDMGFIHDIRKVLAALPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM ++ ++S L NP +I V PSST E I + K LL L Sbjct: 181 QSLFFSATMPPDIVRLSSTILHNPAKISVTPPSSTVEIINQQIY--FVDKGNKSPLLVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ D + ++F K + L K G + AIHGN Q +R + LSNFK ++ Sbjct: 239 LKNPD-ITTALVFTRTKHGADKVVKHLLKNGITAEAIHGNKAQNARQRALSNFKSQKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ ++ HV N+D N E Y+HRIGRTGRAG G A + E+ ++ Sbjct: 298 LVATDIAARGIDVDELQHVINYDTSNIPETYVHRIGRTGRAGASGTAISFCDAEEKAYLK 357 Query: 359 AIEKLIEKKV 368 IEKLI K + Sbjct: 358 DIEKLIAKSI 367 >gi|110638956|ref|YP_679165.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406] gi|110281637|gb|ABG59823.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406] Length = 446 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 165/386 (42%), Positives = 237/386 (61%), Gaps = 8/386 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L ++ A+ + GY PTPIQ + IP VLQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MLFQDLKLIDPILKALSEEGYTTPTPIQSQAIPYVLQGKDLLGCAQTGTGKTAAFSIPIL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L +K R R R+LI+ PTRELA Q+ ++ + YGK LT ++ GG+ Q Sbjct: 61 QLLSVKKSTDRKRPIRSLIVTPTRELAIQIGESLQAYGKYTGLTSTVIFGGVNQSRQVTA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G DVL+ TPGR+LD N+G + + +IEI V+DEADRMLDMGF+ ++ + +P R Sbjct: 121 LQNGIDVLVATPGRLLDLMNQGFISLRHIEIFVLDEADRMLDMGFVHDVRRLLLALPAKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+ K+++N L NP ++EV SSTA+TI+ + K LL ++ Sbjct: 181 QSLFFSATMPPEIVKLADNILVNPSKVEVTPVSSTADTIKQFMY--FVDRGNKNNLLVEV 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ +K ++F K + L + AIHGN Q +R L+NFK T ++ Sbjct: 239 LQDPK-IKTCLVFTRTKHVADKVVKMLAEHKIKAEAIHGNKSQNARQNALTNFKAQTTRI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ ++ V N+++PN E Y+HRIGRTGRAG G AF+ E+ ++ Sbjct: 298 LVATDIAARGIDVDNLEFVINYEIPNIPETYVHRIGRTGRAGAKGTAFSFCDAEEKAYLK 357 Query: 359 AIEKLIEKKVDWLNGD---LSSLNPP 381 IEKLI KK+ ++ L NPP Sbjct: 358 DIEKLISKKIPVIDEHPYPLMDHNPP 383 >gi|333007150|gb|EGK26642.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218] Length = 406 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 235/372 (63%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T--ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ + + ++F K +L L K G AIHGN Q +R + L++FK G I Sbjct: 238 HMI-GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDI ++ HV N ++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 297 RVLVATDIAARGLDIEELPHVVNHELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356 Query: 357 IDAIEKLIEKKV 368 + IEKL++K++ Sbjct: 357 LRDIEKLLKKEI 368 >gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066] gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066] Length = 528 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS + AV+ AG+ +P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +K R + L++ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +NNIE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ F+ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++I+ +FK G I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] Length = 439 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 157/383 (40%), Positives = 240/383 (62%), Gaps = 8/383 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLG++P ++ A+ AGY PT +Q + +P + D+ AQTG+GKTA+F+LP L Sbjct: 1 MTFSDLGIAPTILRALQAAGYENPTAVQAEAVPAAIAGRDLLVSAQTGSGKTAAFLLPAL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 T L E+ A+ + PR L+L PTRELA QV N +YGK+ + A L+GG F Q + Sbjct: 61 TKLSERSTAKGQGPRVLVLTPTRELAQQVEKNALEYGKDLRWMRTACLVGGSSFGYQIRA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L R D+++ TPGR++DH G++ + +E+LV+DEADRMLDMGFI I+ I P TR Sbjct: 121 LSRPIDLIVATPGRLMDHMRSGRIDFSRLEMLVLDEADRMLDMGFIDDIEAIVKATPETR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQQ 237 QT+LFSAT+ + +++E ++P+RIE+ ++ TIE + YA + K LL Sbjct: 181 QTVLFSATLDGIVGRMAEKMTRDPQRIEIARTETSGGTIEEHLL--YADDLNHKHRLLDY 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ + +IF K L L QG+S +HG++ Q R + L++ + G I+ Sbjct: 239 ILK-ESGFDQCVIFSATKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIK 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+P + HV NFD+P +AE+Y+HRIGRTGRAGR G A TL ++ + Sbjct: 298 VLVATDVAARGIDVPTITHVVNFDLPKQAEDYVHRIGRTGRAGRDGTAITLAESKEFHKV 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNP 380 IE+ +++++ G + L P Sbjct: 358 RRIEQYLKRQI--TEGVIDGLEP 378 >gi|304408600|ref|ZP_07390221.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307305428|ref|ZP_07585176.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304352421|gb|EFM16818.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306911731|gb|EFN42156.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 467 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 155/366 (42%), Positives = 232/366 (63%), Gaps = 4/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ + GY +PTPIQ K IP++L+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSQLGLSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + + R + R LIL PTRELA QV DN KY K LT + GG+ Q ++L Sbjct: 61 QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + I +LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ +++ ++NP IE+ S+ A I+ + KK ALL +L+ Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITV--DKDKKSALLSKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + +IF K+ L LEK+G + AIH Q R ++L +FK G ++ + Sbjct: 239 TEQ-AWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI + V N+D+P+ A++YIHRIGRTGRAG G+A + V+K+D +++ A Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357 Query: 360 IEKLIE 365 IE+ ++ Sbjct: 358 IERRLD 363 >gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255] Length = 638 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 157/375 (41%), Positives = 231/375 (61%), Gaps = 4/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV +AGY P+PIQ IP VL D+ G AQTGTGKTA+F LPML Sbjct: 1 MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPML 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L R + R LIL PTRELA Q+ ++F+ YGK L ++ GG+ Q + L Sbjct: 61 DRLTANAPRRKGAIRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G D+LI PGR+ D +G + ++N+EI V+DEADRMLDMGF+ ++ + + +P RQ Sbjct: 121 KKGVDILIACPGRLNDLIGQGFIDLSNLEIFVLDEADRMLDMGFVHDVKKVIAKLPGERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM E+++++ L+ P ++V+ SST + I+ + + K LL L+ Sbjct: 181 NLMFSATMPTEIEQLAAGILRKPAFVKVDPVSSTVDRIQQSLY--HVEKGNKKFLLPWLI 238 Query: 240 QS-QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ Q + N ++F K + L KQG AIHGN Q +R+ L NFK G ++ Sbjct: 239 KNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALENFKAGKTKV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ HVFN+D+P E Y+HRIGRT RAG G A + A E+ +++ Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLA 358 Query: 359 AIEKLIEKKVDWLNG 373 IEKL K+ ++G Sbjct: 359 GIEKLNRGKIPVVSG 373 >gi|159045255|ref|YP_001534049.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12] gi|157913015|gb|ABV94448.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12] Length = 434 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 154/361 (42%), Positives = 225/361 (62%), Gaps = 5/361 (1%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LGLSP++V + PTPIQ + IP L DV GIAQTGTGKTA+F LP+L L K Sbjct: 2 LGLSPRLVAGLAAQNITDPTPIQTRAIPHGLNGRDVLGIAQTGTGKTAAFGLPLLDALMK 61 Query: 66 G--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123 + R R LIL PTREL +Q+ ++ + + +L + +++GG+ Q K+ ERGA Sbjct: 62 AGTKPAPRTCRGLILAPTRELVSQICESLRAFTEGSHLKLQVIVGGVAIGPQIKRAERGA 121 Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183 D+++ TPGR++D +R L ++ LV+DEAD+MLD+GFI ++ I L+P RQT+LF Sbjct: 122 DLIVATPGRLIDLLDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTMLF 181 Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243 SATM +++++S +L +P R+EV P A+ I V Q +K L+ L +D Sbjct: 182 SATMPKQMEELSRAYLTDPARVEVAPPGKIADKITQS-VHFVEQGAKTQLLIDLLGNHRD 240 Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 + ++F K L L GF AIHGN Q R + L F+EGT++++VA+D Sbjct: 241 EL--ALVFSRTKHGADRLARKLSNAGFETAAIHGNRSQGQRERALKAFREGTLKVLVATD 298 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 +AARG+DIPDV V+NFD+PN EN++HRIGRT RAGR G+A A E++ + A++K+ Sbjct: 299 VAARGIDIPDVRFVYNFDLPNVPENFVHRIGRTARAGRDGQAVAFCAPEEMGELRAVQKV 358 Query: 364 I 364 + Sbjct: 359 M 359 >gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus HTCC2516] gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus HTCC2516] Length = 406 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 156/379 (41%), Positives = 231/379 (60%), Gaps = 12/379 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLSP++ + + G PTPIQ + IP L+ DV G+AQTGTGKTA+F LP++ Sbjct: 1 MTFENLGLSPRLAARLAEQGLTAPTPIQTQAIPHALEGRDVLGLAQTGTGKTAAFGLPLI 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQN 116 L P T LIL PTRELAAQ+ D+ + G + + L++GG AQ Sbjct: 61 QALTAAGTHA-APNTVLALILAPTRELAAQIVDSLRAFAGNGGSPRIGLVVGGKSINAQA 119 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L RG D+L+ TPGR++D +R L + LV+DEAD+MLD+GFI ++ I L+P Sbjct: 120 NALRRGTDILVATPGRLIDLLDRKALTLGKARYLVLDEADQMLDLGFIHALRRIAPLLPK 179 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCAL 234 RQT+LFSATM ++ +++ +L +P R++V+ P A+ ++ FVA A K AL Sbjct: 180 ERQTMLFSATMPKQMSEIAGAYLTDPVRVQVSPPGKPADKVDQSVHFVAKDA----KQAL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L LL + + ++F K L L++ GF+ +IHGN Q R + L F+EG Sbjct: 236 LIDLLDAHRD-ERALVFARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALDGFREG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++++VA+D+AARG+DIP VG+V+N+++PN ENY+HRIGRT RAG G+A +E++ Sbjct: 295 KVRVLVATDVAARGIDIPGVGYVYNYELPNVPENYVHRIGRTARAGADGRAVAFCGEEEM 354 Query: 355 KHIDAIEKLIEKKVDWLNG 373 + IEK++ K + G Sbjct: 355 GELRDIEKVLGKPIAIAGG 373 >gi|271500987|ref|YP_003334012.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii Ech586] gi|270344542|gb|ACZ77307.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586] Length = 452 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 163/377 (43%), Positives = 235/377 (62%), Gaps = 18/377 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY +PTP+Q + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFQSLGLSADILRAVEEQGYREPTPVQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR VR LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLNESPVLAKGRRPVR---ALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+LI TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231 P RQ LLFSAT +DE+++++ L NP +EV NTPS H + +K Sbjct: 178 PPKRQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKKRK 232 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L+ + + ++F K +L L K G + AIHGN Q +R + L+NF Sbjct: 233 RELLSHLI-GKHNWQQVLVFTRTKHGANHLAELLNKDGITAAAIHGNKSQGARTRALANF 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K+G I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA G+A +LV Sbjct: 292 KDGDIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCV 351 Query: 352 EDIKHIDAIEKLIEKKV 368 ++ K + IE+L+++++ Sbjct: 352 DEHKLLRDIERLLKREI 368 >gi|217973506|ref|YP_002358257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|217498641|gb|ACK46834.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 467 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 174/461 (37%), Positives = 269/461 (58%), Gaps = 26/461 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ + GY +PTPIQ K IP++L+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + + R + R LIL PTRELA QV DN KY K LT + GG+ Q ++L Sbjct: 61 QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + I +LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ +++ ++NP IE+ S+ A I+ + KK ALL +L+ Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITV--DKDKKSALLSKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + +IF K+ L LEK+G + AIH Q R ++L +FK G ++ + Sbjct: 239 TEQ-AWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI + V N+D+P+ A++YIHRIGRTGRAG G+A + V+K+D +++ A Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357 Query: 360 IEK-----LIEKKVDWLNGDLSSLNPPLEKIDIAQHN-----------HARKNNPIPQKS 403 IE+ ++ K+++ G + + P+ +D N AR + P + S Sbjct: 358 IERRLGHIIVRKEIE---GFVPNKEVPVSILDFVPKNTTPKTFKARAPEARTSRPAKEGS 414 Query: 404 TGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLG 444 KK+ S+ KS K + +++ Q EN +++ G Sbjct: 415 FETAHAKKHRSA-KSKPEAKAA--VARPQSAQTENSSEATG 452 >gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158] gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158] Length = 480 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 4 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 63 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T + R R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 64 QRLHTFYAEHRNAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 123 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+RG D+++ TPGR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 124 DALKRGVDIVVATPGRLLDHMQQKTIDLSSLDILVLDEADRMLDMGFIHDIKRVLAKLPP 183 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAET+ +K LL Sbjct: 184 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 241 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 242 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALTEFKNSTL 300 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 301 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 360 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 361 LRDIERLIKREI 372 >gi|148977043|ref|ZP_01813689.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3] gi|145963703|gb|EDK28964.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3] Length = 428 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 168/419 (40%), Positives = 252/419 (60%), Gaps = 13/419 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P++V A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFSSQGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L G+ R R LIL PTRELAAQ+A N + Y K L+V+ + GG +Q ++ Sbjct: 61 QHLLNSGKKASRGTARGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQ 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H G + + N+E LV DEADR+LDMGFI ++ I V + Sbjct: 121 LELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++S + L+ PKRI V +STA T+ H V +K LL +L Sbjct: 181 QIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAATVGH--VVYPVDQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ + L+ G HG+ Q +R + L +FKEG ++ Sbjct: 239 I-GRKNWRQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 298 MVATDVAARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVV 357 Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNP--IPQKSTGFDRR 409 +EKLI+ ++V+ + + +EK++ ++ RKNN PQ +RR Sbjct: 358 QVEKLIQQRIRRVEQPGYEPKKRDAYIEKLNTKAAYKNRQGRKNNANDAPQDQASAERR 416 >gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61] gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3] gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52] gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61] gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3] gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52] Length = 467 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 159/370 (42%), Positives = 234/370 (63%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +V+ A+ G+ + TPIQ KTIPL LQ DV G AQTGTGKTA+F +P I Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +EK + + L++ PTRELA QV++ K G + V + GG E Q + L++ Sbjct: 61 VEKVDVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGRI+DH NRG L + ++ +V+DEAD ML+MGFI I+ I S VP RQTLL Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ ++V T I+ ++ + + KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEK--KKFDILTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G++ IHG++ Q R+ +L FKEG I+++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V +I + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIER 357 Query: 363 LIEKKVDWLN 372 ++K++ + Sbjct: 358 TTKRKMERMK 367 >gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5] gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5] Length = 506 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 230/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL +SP ++ A+ Y PTPIQ + IP VL D+ G AQTGTGKTA+F +PM+ Sbjct: 1 MTFEDLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + M R L+L PTRELA Q++DN + Y + L ++GG+ + Q + Sbjct: 61 QLLNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++GAD+LI TPGR+LD N+ + + ++EILV+DEADRMLDMGFI ++ I + +P Sbjct: 121 ALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTL FSATM E+ ++ + L NP ++E+ SSTAE IE + K L + Sbjct: 181 KQTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVY--LLETGNKQQQLNE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ ++ + ++F K+ + L K + AIHG+ Q SR L+NFK G + Sbjct: 239 LMKD-SSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ HV NF++PN E Y+HRIGRTGRAG G A + +++ + Sbjct: 298 VLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFL 357 Query: 358 DAIEKLIEKKV 368 IEKLI K + Sbjct: 358 RDIEKLIGKSI 368 >gi|313900312|ref|ZP_07833806.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2] gi|312954861|gb|EFR36535.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2] Length = 437 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 165/420 (39%), Positives = 248/420 (59%), Gaps = 10/420 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L ++ ++ AV + GYV PTPIQ + IP LQ D+ G AQTGTGKTA+F +P + Sbjct: 1 MKFQTLHITEPILKAVKEQGYVDPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+K + R+LI+ PTRELA Q+ +N Y + + A++ GG+P + Q + L+ Sbjct: 61 QLLKKHYKQ--SIRSLIVTPTRELAIQIQENITAYAQYTTIRSAVIFGGVPQKPQERILK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR+ D +G + +++IEI ++DEADRMLDMGF+P ++ I + +P +QT Sbjct: 119 AGVDILVATPGRLNDLIQQGIIDISHIEIFILDEADRMLDMGFLPDVKRIIAKLPKRKQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++++ L P IEV S+T E I+ Y L L Sbjct: 179 LFFSATMPSEIRKLAQSLLHEPVSIEVTPASTTVEKIDQSL---YYVDKANKKRLLLKLL 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++N ++F K N L L + G + IHGN Q +R + L FKEG +++V Sbjct: 236 QKNRVQNALVFTRTKSNANRLAKYLNENGVTSGVIHGNKSQNARQQALLQFKEGKSRVLV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HVFNFD+PN AE Y+HRIGRTGRAGR G A + +++ I Sbjct: 296 ATDIAARGIDVQELSHVFNFDIPNEAEVYVHRIGRTGRAGRQGCAIAFSDCNEAEYVKNI 355 Query: 361 EKLIEKKVDWL-NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 EKLI + + + + N LE AQ + R+ P + S R +N S+ H Sbjct: 356 EKLIRMHIPVVEDREFPMRN--LEPAASAQSQNRRRQKPAAKPSAS--NRSENRSAAVKH 411 >gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC 49242] gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC 49242] Length = 450 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 158/373 (42%), Positives = 231/373 (61%), Gaps = 7/373 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGL+ ++ A+ GY PT IQ + IP +++ D+ GIAQTGTGKTA+F LP+L Sbjct: 4 FSDLGLAEILLRALDREGYETPTSIQAQAIPYLMEGRDLLGIAQTGTGKTAAFALPILNR 63 Query: 63 LEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R R RTL+L PTRELAAQ+AD+F YG+ +V +++GG+ Q L Sbjct: 64 LAADRRRPAPFTARTLVLAPTRELAAQIADSFRAYGQFMRPSVGVIVGGVSHRPQIDMLA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVL+ TPGR+LDH GKL + E+LV+DEAD MLD+GFI I+ I + +P RQT Sbjct: 124 RGLDVLVATPGRLLDHIASGKLKLAATEVLVLDEADHMLDLGFIVPIRQIVAKLPKKRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239 LLFSATM E+ ++E+ LQNP ++ V ++TAE + +H F+ K +L +L+ Sbjct: 184 LLFSATMPKEIAGLAEDMLQNPAQVSVTPVATTAERVAQHVFL---VDGGAKRDMLIELM 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + I+F K+ + L+ G AIHGN Q R++ L F++G +++ Sbjct: 241 NDAD-VSRAIVFTRTKRGADRVAEHLDAAGVGAEAIHGNKSQSQRIRALDAFRKGRTRVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV N+++P E Y+HRIGRT RAG G+A +L + + + Sbjct: 300 VATDIAARGIDVDGVTHVVNYELPETPEAYVHRIGRTARAGASGRAISLCDNGERQLLRQ 359 Query: 360 IEKLIEKKVDWLN 372 IEKL + + + + Sbjct: 360 IEKLTRQTLAFTD 372 >gi|310767076|gb|ADP12026.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617] Length = 469 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 160/375 (42%), Positives = 239/375 (63%), Gaps = 14/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQV +N + Y K ++ ++ GG+ Sbjct: 61 QLLSSHNPHPKGR---RPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G DVL+ TPGR+LD ++ L ++ +EILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233 P RQ LLFSAT +DE++ ++E L NP+++EV ++ +E + +H + K+ Sbjct: 178 PAKRQNLLFSATFSDEIKILAEKLLHNPEQVEVARRNTASEQVTQHVHLVD----KKRKR 233 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L LL + + ++F K +L L K G + AIHGN Q +R + LS+FK+ Sbjct: 234 ELLSLLIGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKD 293 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I+++VA+D+AARG+DI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 294 GKIRVLVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDE 353 Query: 354 IKHIDAIEKLIEKKV 368 K + IE+++++++ Sbjct: 354 HKLLRDIERVLKREI 368 >gi|251790108|ref|YP_003004829.1| DEAD/DEAH box helicase domain-containing protein [Dickeya zeae Ech1591] gi|247538729|gb|ACT07350.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591] Length = 455 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 163/377 (43%), Positives = 234/377 (62%), Gaps = 18/377 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY +PTP+Q + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR VR LIL PTRELAAQ+ +N Y K L ++ GG+ Sbjct: 61 QLLNERPVLAKGRRPVR---ALILTPTRELAAQIGENVLAYSKYLRLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+LI TPGR+LD ++ + ++ ++ILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILIATPGRLLDLEHQNAVDLSQVDILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231 P RQ LLFSAT +DE+++++ L NP +EV NTPS H + +K Sbjct: 178 PPKRQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVH-----FVDKKRK 232 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L+ D + ++F K +L L K G + AIHGN Q +R + L+NF Sbjct: 233 RELLSHLIGKHD-WRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANF 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K+G I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA G+A +LV Sbjct: 292 KDGDIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCV 351 Query: 352 EDIKHIDAIEKLIEKKV 368 ++ K + IE+L+++++ Sbjct: 352 DEHKLLRDIERLLKREI 368 >gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC 49124] gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC 49124] Length = 528 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS + AV+ AG+ KP+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +K R + L++ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +NNIE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ F+ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLSII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|269139672|ref|YP_003296373.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|267985333|gb|ACY85162.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|304559541|gb|ADM42205.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda FL6-60] Length = 440 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 161/373 (43%), Positives = 239/373 (64%), Gaps = 10/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL +++ AV + GY PTPIQ + IPLVLQR D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L + G+ R R R LIL PTRELAAQ+ +N +Y ++ L ++ GG+ Q Sbjct: 61 QLLHQNPKNGKGR-RPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQM 119 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL G DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P Sbjct: 120 MKLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPA 179 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 RQ LLFSAT +DE++ ++ + L NP +EV ++ +E + +H + +K LL Sbjct: 180 KRQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELVTQHVHL---VDKKRKRELL 236 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ ++D + ++F K +L L K G S AIHGN Q +R + L++FK G Sbjct: 237 SFLIGTRD-WRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGD 295 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+AARGLDI + +V N+++PN E+Y+HRIGRTGRA G+A +LV ++ K Sbjct: 296 IRVLVATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHK 355 Query: 356 HIDAIEKLIEKKV 368 + IE+L+++ + Sbjct: 356 LLRDIERLLKRPI 368 >gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32] gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32] Length = 446 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 164/439 (37%), Positives = 257/439 (58%), Gaps = 28/439 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL +++ A+ GY PTPIQ + IP++ + D+ AQTGTGKTA+F LP++ Sbjct: 1 MSFDSLGLRVELLTAIASQGYTMPTPIQTQAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 60 Query: 61 TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + R PR L+L PTRELAAQV++ Y + +L ++ GG+ +AQ ++ Sbjct: 61 QMLGENIPPEKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+++ TPGR+LDH RG + ++ I+ LV+DEADRMLD+GFI IQ + +P R Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIQKVAEYLPVKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT + ++++++ L P+RIEV + A+ + + S+K +L L Sbjct: 181 QTLLFSATYSQSIKQLADELLNKPRRIEVARSNIAADAVTQAIYQV--EKSRKREMLSFL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S+ ++F + L L G AIH N Q R + L+ F+ G ++ Sbjct: 239 I-SRGKWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRNRTLAEFRRGEFRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV N+D+P E+Y+HRIGRTGRAG+ G A +LV+ E+ + Sbjct: 298 LVATDVAARGLDIEQLPHVVNYDLPQVPEDYVHRIGRTGRAGKEGIALSLVSHEEQPLLK 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKI-DIAQHNHAR------KNNPIPQKSTGFDRRKK 411 AIEKL++ + PL+ + + Q+ R K++ P K+ R+++ Sbjct: 358 AIEKLLKYAI------------PLQTLAEFPQYAVKRSGANKIKSDKGPSKA----RKRE 401 Query: 412 NYSSQKSHIPLKESEKISK 430 ++++ P KES+ SK Sbjct: 402 AIPAKQAKSPAKESKSPSK 420 >gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] Length = 447 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 160/371 (43%), Positives = 230/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +++ AV +GY PTP+Q + IP + D+ + TG+GKTA+F LP L Sbjct: 1 MTFHALGLAEELIAAVEQSGYTTPTPVQEQAIPAAIAGGDLLVSSHTGSGKTAAFTLPSL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 L R A PR L+L PTRELA QV + + YG+ L A L+GG PF AQ K+ Sbjct: 61 HRLVGRRPAPNSGPRVLVLTPTRELAQQVEEAVKTYGRALRWLNTACLVGGAPFFAQVKQ 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L R DV++ TPGR+LDH NR KL ++++E LV+DEADRMLDMGF I+ I +P +R Sbjct: 121 LSRPVDVVVATPGRLLDHLNRRKLKLSDVETLVLDEADRMLDMGFAEDIEAIVGAIPASR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQ 237 QTLLFSAT+ + ++ +NP+RIE+ + + IE + +A K LL+ Sbjct: 181 QTLLFSATLDGVVGALANKLTRNPQRIEIASTEAKRGNIEQRLM--FADDMGHKSRLLEA 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + D ++ ++F KK+ L SL+++GFS A+HG++ Q R + L ++G I Sbjct: 239 LLGT-DGLQQAVVFTATKKSADELSLSLQEKGFSAAALHGDMHQTVRNRTLQRLRQGRIG 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ + HV NFD P + E+Y+HRIGRTGRAGR G A TL + I Sbjct: 298 VLVATDVAARGIDVAGISHVINFDPPRQVEDYVHRIGRTGRAGRDGIAITLSGPRETGLI 357 Query: 358 DAIEKLIEKKV 368 AIE+ ++ Sbjct: 358 RAIERFTGDRL 368 >gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 551 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 152/381 (39%), Positives = 236/381 (61%), Gaps = 6/381 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D GL+ ++ A+ +AGYV PTPIQ + +P ++ D+CGIAQTGTGKTA+F LP+L Sbjct: 42 FTDFGLAEPILRALGEAGYVSPTPIQTQALPPAMEGRDLCGIAQTGTGKTAAFALPILHR 101 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE RA R R L+L PTRELA+Q+A++F YG++ T ++ GG+ Q + + Sbjct: 102 LSLENRRAPRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTSTVVFGGVNISRQERAIA 161 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR++D +R L + +EILV+DEAD+MLD+GFI ++ I ++P RQ+ Sbjct: 162 PGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQS 221 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM + +++ +L NP ++ V ++TAE ++ + + K ALL +L+ Sbjct: 222 LFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVI--FCHTGAKQALLNHVLR 279 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++F K + L+K G AIHGN Q R + L+ F++G+ +++V Sbjct: 280 D-PKIERVLVFTRTKHGADRVVRGLDKVGIVGAAIHGNKSQPQRERALAAFRDGSCRVLV 338 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+D+PN E+Y+HRIGRT RAG G+A + E+ ++ I Sbjct: 339 ATDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 398 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 E+ +KV + G PP Sbjct: 399 ERTTRQKVPVV-GFPEGFQPP 418 >gi|118579192|ref|YP_900442.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501902|gb|ABK98384.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM 2379] Length = 447 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 164/406 (40%), Positives = 241/406 (59%), Gaps = 23/406 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF P + + AGY PTPIQ ++IP V+ DV G+AQTGTGKTA+F LP+L Sbjct: 1 MDFQKFEFHPTIAAGISAAGYSTPTPIQKQSIPPVMAGSDVMGLAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +G+ R LI+ PTRELA Q+ + + G L + GG+ Q ++L Sbjct: 61 HRLMEGKQGTV--RALIIAPTRELAEQINTSIAQLGAKTGLKSMTVYGGVSVNPQIERLR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+++ PGR+LDH N+G + ++ IE+LV+DEAD+M DMGF+P I+ + +P RQT Sbjct: 119 RGVDIVVACPGRLLDHINQGTIDLSRIEVLVLDEADQMFDMGFLPDIRRVLKHLPAQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D++++++ + L+ P ++ + ++ T+ H K LL +LL+ Sbjct: 179 LLFSATMPDDIRRLASDILRQPITVQAGS-TAPPVTVSHALYPVSQHL--KTPLLLELLR 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 DT ++ +IF K L LEK G+ ++ GN+ Q R L F++GT Q+MV Sbjct: 236 HTDT-ESVLIFARTKHRAKRLGEQLEKAGYRATSLQGNLSQNRRQAALDGFRDGTFQIMV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+D+P+ AE YIHRIGRTGRA R G AFTLV +D +A+ Sbjct: 295 ATDIAARGIDVSQISHVVNYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTPDD----NAM 350 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406 + IEKK LN LE+ + Q ++ + P P K + F Sbjct: 351 VRTIEKK----------LNAELERRTVDQFDY---SVPAPHKDSEF 383 >gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK] Length = 559 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 154/381 (40%), Positives = 236/381 (61%), Gaps = 12/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADL + P V+ AV D GY P+PIQ TIP +L+ DV G+AQTGTGKTA+F +P+L Sbjct: 13 LTFADLQIHPAVLKAVADVGYESPSPIQAATIPAILEGSDVVGLAQTGTGKTAAFAIPIL 72 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++ R + L+L PTRELA QVA+ F +YG + V + GG + Q L+ Sbjct: 73 SKIDTDS---RNTQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLK 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA V++ TPGR++DH +G L +++++ LV+DEAD ML MGF ++ I + P +Q Sbjct: 130 RGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQV 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++K++ +L +P + V + + TAE I + Y +K L +LL+ Sbjct: 190 ALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYF--LVSYPRKMDALTRLLE 247 Query: 241 SQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ D M I+F K+ + L +GF+ AI+G+I Q R + ++ K+GTI + Sbjct: 248 TEQGDAM---IVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDI 304 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV NFD+P+ E+Y+HRIGRTGRAGR G A V + + Sbjct: 305 LVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLG 364 Query: 359 AIEKLIEKKVDWLNGDLSSLN 379 AIE++ +K+ + +L S++ Sbjct: 365 AIERVTRQKL--VESELPSVD 383 >gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84] gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84] Length = 556 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 154/375 (41%), Positives = 234/375 (62%), Gaps = 4/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGLS ++V + + PTPIQ + IPLVLQ D+ G+AQTGTGKTA+F LP++ Sbjct: 19 DFHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIE 78 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L K R R RTLIL PTREL Q+ADN + + + L + +++GG Q +L Sbjct: 79 MLLKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRKTALRINVVVGGASINKQQLQL 138 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG D+L+ TPGR+LD +R L + + LV+DEAD+MLD+GFI ++ I+ +VP RQ Sbjct: 139 ERGTDILVATPGRLLDLISRRALSLGQVSYLVLDEADQMLDLGFIHDLRKISKMVPAKRQ 198 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++ +L NP ++EV+ P A+ +E +V + + K +L++ + Sbjct: 199 TMLFSATMPKTIADLAAEYLTNPVKVEVSPPGKAADKVEQ-YVHFVSGQNHKTEILKESI 257 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S + ++F K L LE GF+ +IHGN Q R + L F++G ++++ Sbjct: 258 -SANPDGRAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVL 316 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP V HV+N+D+P + Y+HRIGRT RAGR G A A ++ + + Sbjct: 317 VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRD 376 Query: 360 IEKLIEKKVDWLNGD 374 IE+L+ ++ +G+ Sbjct: 377 IERLMGIEIAVASGE 391 >gi|320323321|gb|EFW79409.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. glycinea str. B076] gi|320327518|gb|EFW83530.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. glycinea str. race 4] gi|330876701|gb|EGH10850.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. glycinea str. race 4] Length = 559 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|209809226|ref|YP_002264764.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida LFI1238] gi|208010788|emb|CAQ81183.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida LFI1238] Length = 418 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 167/416 (40%), Positives = 251/416 (60%), Gaps = 20/416 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+ ++V V + G+ + TP+Q + IPLVL+ HDV AQTGTGKTA+F LP++ Sbjct: 1 MSFASLGLTTELVNIVSELGFTEATPVQQQAIPLVLKGHDVLAGAQTGTGKTAAFGLPLI 60 Query: 61 T-ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 ++E R+ ++ RTLIL PTRELA QV D+ Y KN +L + GG + Q Sbjct: 61 QRLIESPSPRIANSKVIRTLILTPTRELAQQVFDSLVTYTKNTDLKCVVAYGGTSVKIQT 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L GAD+L+ TPGR+LDH + + +N E LV+DEADRMLDMGF+P IQ I + Sbjct: 121 ENLIGGADILVATPGRLLDHLHLNNITLNQAEYLVLDEADRMLDMGFMPDIQRILRKMAS 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 QTL FSAT D++++++ L NPK ++V +STA+T+E +K LL Sbjct: 181 KHQTLFFSATFGDKIKEIAYRILDNPKVVQVTPSNSTADTVEQMVYP--VDKHRKSELLA 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ K ++F K+ +L L+ G +I+G+ Q +R++ L FK G I Sbjct: 239 YLIGSRN-WKQVLVFTKTKQGSDDLVKELKLDGIKAASINGDKSQGARIRALEEFKTGKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+++P +AE+Y+HRIGRTGRAG GKA +L++ ++ Sbjct: 298 RALIATDVAARGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAVSLMSADEDYL 357 Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 + AIE L++ ++ +WL G N P ++N P + D+RK Sbjct: 358 LKAIETLLDTRLPQEWLKGYEPDPNAP-----------KKENQPRQSRGRSSDKRK 402 >gi|71906517|ref|YP_284104.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] gi|71846138|gb|AAZ45634.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] Length = 425 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 162/389 (41%), Positives = 241/389 (61%), Gaps = 11/389 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL +++ AV D GY PTPIQ + IP V+ D+ AQTGTGKTA F LP+L Sbjct: 1 MHFSDLGLKAELLRAVADQGYDTPTPIQQQAIPAVMTGRDLMATAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGR----ARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L G RV + PR L+L PTRELA QV ++ YGK+ +T + GG+ Q Sbjct: 61 HRLCSGPNDRLTRVAKTPRVLVLTPTRELAIQVEESVRTYGKHLPITSLAVFGGVGINPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L RG D+L+ TPGR+LDH + + ++ IEI V+DEADRMLDMGFI I+ I +L+P Sbjct: 121 IANLRRGVDILVATPGRLLDHVQQRTVDLSKIEIFVLDEADRMLDMGFIRDIRKIIALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ L+FSAT + ++++++ L NP ++V ++ AET+ + T +K LL Sbjct: 181 KQRQNLMFSATFSPDIRELAAGLLHNPASVDVAARNTAAETVTQRVIET--NRDQKKELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L +++ ++F K L +LEK G AIHG+ Q +R + L+ FKEG Sbjct: 239 CHLFETRG-WHQVLVFARTKHGADALSKTLEKAGIKSAAIHGDKSQGARTRALTEFKEGK 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + +VA+D+AARG+DI + +V N+++PN AE+Y+HRIGRTGRAG G+A +LV+ ++ Sbjct: 298 LVALVATDIAARGIDIDALPYVINYELPNVAEDYVHRIGRTGRAGMEGEAISLVSHDERG 357 Query: 356 HIDAIEKLIEKKVDWL---NGDLSSLNPP 381 + IE+LI++ ++ + + S++ PP Sbjct: 358 SLRDIERLIKRDLERVVIPGFEPSAIAPP 386 >gi|66046848|ref|YP_236689.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|302187695|ref|ZP_07264368.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae 642] gi|63257555|gb|AAY38651.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|330972316|gb|EGH72382.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 557 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|332529812|ref|ZP_08405766.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC 19624] gi|332040833|gb|EGI77205.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC 19624] Length = 565 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 242/373 (64%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +L L+P ++ AV + GY PT IQ + IPL+LQ +D+ G AQTGTGKTA+F LP+L Sbjct: 1 MNFEELKLAPAILKAVREQGYETPTAIQEQAIPLILQGNDLLGGAQTGTGKTAAFTLPLL 60 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L R+ R L+L PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 HNLTMRRSAQNKWGGNGIRALVLTPTRELAAQVEESVRNYGKYLQLESTVIFGGVGMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++++G D+L+ TPGR+LD +G + ++ +++LV+DEADRMLDMGFI ++ + +L+P Sbjct: 121 IARVKKGVDILVATPGRLLDLQQQGFMDLSQVQMLVLDEADRMLDMGFIHDVKKVLALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE++ ++E L+NP+ ++V ++T + I V T + SKK ALL Sbjct: 181 KDKQSLLFSATFSDEIRALAEGLLKNPQSVQVTPRNTTVQRITQS-VHTVGR-SKKKALL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ +QD ++F K ++ L K G + A+HGN Q +R + L+ FK G Sbjct: 239 AHIINAQD-WSQVLVFTRTKFGANHVAEYLNKNGVTAMALHGNKSQGARTQALAGFKSGE 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI ++ HV N+++PN E+Y+HRIGRTGRAGR G+A LV ++ Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNIPEDYVHRIGRTGRAGREGQAVNLVCLDEQG 357 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++++ Sbjct: 358 FMAEIERFTKQQI 370 >gi|257482687|ref|ZP_05636728.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626949|ref|ZP_06459903.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649408|ref|ZP_06480751.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. aesculi str. 2250] gi|330866127|gb|EGH00836.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889311|gb|EGH21972.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. mori str. 301020] gi|330986634|gb|EGH84737.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 559 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus salivarius SK126] gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus salivarius SK126] Length = 528 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS + AV+ AG+ KP+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +K R + L++ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +NNIE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ F+ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] Length = 561 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 152/370 (41%), Positives = 230/370 (62%), Gaps = 10/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADL + P V+ AV D GY P+PIQ TIP +L+ DV G+AQTGTGKTA+F +P+L Sbjct: 13 LTFADLQIHPAVLKAVADVGYESPSPIQAATIPAMLEGSDVVGLAQTGTGKTAAFAIPIL 72 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++ R + L+L PTRELA QVA+ F +YG + V + GG + Q L+ Sbjct: 73 SKID---TESRNTQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLK 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA V++ TPGR++DH +G L +++++ LV+DEAD ML MGF ++ I + P +Q Sbjct: 130 RGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQV 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++K++ +L +P + V + + TAE I + Y +K L +LL+ Sbjct: 190 ALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYF--LVSYPRKMDALTRLLE 247 Query: 241 SQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ D M I+F K+ + L +GF+ AI+G+I Q R + ++ K+GTI + Sbjct: 248 TEQGDAM---IVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDI 304 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV NFD+P+ E+Y+HRIGRTGRAGR G A V + + Sbjct: 305 LVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLG 364 Query: 359 AIEKLIEKKV 368 AIE++ +K+ Sbjct: 365 AIERVTRQKL 374 >gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides DG6] gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides DG6] Length = 523 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 158/368 (42%), Positives = 226/368 (61%), Gaps = 11/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGLS ++ + D GY +PTPIQ + IP++L DV AQTGTGKTA+F LP++ Sbjct: 4 FSELGLSEPILRVLGDLGYDEPTPIQEQAIPVMLSNSDVIAQAQTGTGKTAAFALPIVQR 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L R +P+ LIL PTRELA QVA+ KYGK ++VA + GG P Q + LE+G Sbjct: 64 LRDER----VPQALILAPTRELAMQVAEAIYKYGKGRRISVAPVYGGQPIYRQLRALEQG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGRI+DH RG L+++ I +V+DEAD MLDMGF I+ I P RQT L Sbjct: 120 VQVVVGTPGRIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFILQQTPQQRQTAL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCF-VATYAQYSKKCALLQQLLQ 240 FSATM + +Q + + + ++ KRI + +T T + + V + C +L Sbjct: 180 FSATMPEAVQGLVQRYTRDAKRISIAAEQLATPRTRQTYYEVMPREKLDALCRIL----- 234 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +T + IIFC + L SL+ +G+ +HG++ Q R +++ F+EG +L+V Sbjct: 235 DVETPSSAIIFCRTRSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAELLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIPDV HV N+DVPN E Y+HRIGRTGRAGR G A TL+ + + + I Sbjct: 295 ATDVAARGLDIPDVTHVINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPRERRMLQII 354 Query: 361 EKLIEKKV 368 E+ ++ Sbjct: 355 ERASRSRI 362 >gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp. C150] gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp. C150] Length = 528 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS + AV+ AG+ KP+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +K R + L++ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +NNIE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ F+ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|33599198|ref|NP_886758.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] gi|33575244|emb|CAE30707.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] Length = 574 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 154/373 (41%), Positives = 231/373 (61%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL+P ++ A+ +AG+ +PT +Q IP + D+ +QTG+GKTA+F+LP L Sbjct: 13 MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117 + + G V + + L+L PTRELA QVAD YG+N L A ++GG+P+ AQ K Sbjct: 73 NRIAHQPGNKGVGV-QVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLK 131 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L R DVL+ TPGR++DH G++ +N + LV+DEADRMLDMGFI I+ I +P Sbjct: 132 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKE 191 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236 RQTLLFSAT+ + +++E ++ P+RIE+ I + YA + K LL Sbjct: 192 RQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLL--YADDAAHKMRLLD 249 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ + I+F K+ +L L QGF+ A+HG+++QR R + L + G + Sbjct: 250 HVLRDA-RLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQL 308 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARG+D+ + H NFD+P +AE+Y+HRIGRTGRAGR G+AFTL + Sbjct: 309 RVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHK 368 Query: 357 IDAIEKLIEKKVD 369 + IE I + ++ Sbjct: 369 VRRIEHYIGQSIN 381 >gi|331012221|gb|EGH92277.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 559 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109] gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109] Length = 778 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 156/394 (39%), Positives = 242/394 (61%), Gaps = 18/394 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLSP+V AV G+ KP+PIQ +TIPL++ DV G+AQTGTGKTA+F LP+L+ Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L + R P+ L+L PTRELA QVA++FE + + + + + GG P+ AQ L R Sbjct: 193 L---NLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRR 249 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +G L ++ + +V+DEAD ML+MGF ++ I P +Q Sbjct: 250 GAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVA 309 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++ +S+ +L +P+ + V + TAE IE ++ + + +K L ++L+ Sbjct: 310 LFSATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVH--HREKLDALTRILEV 367 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D I+F K + L L +G+ AI+G+I Q R + + K+G + ++VA Sbjct: 368 TD-FDAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVA 426 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+D+P E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 427 TDVAARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIE 486 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 + + +++ + +L S++ Q N ARK Sbjct: 487 RATKSRLNEI--ELPSVD---------QVNEARK 509 >gi|109898753|ref|YP_662008.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c] gi|109701034|gb|ABG40954.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica T6c] Length = 458 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 158/367 (43%), Positives = 229/367 (62%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL +++ A+ GY T IQ + IPLVL +HD+ +AQTGTGKTA+F LP+L Sbjct: 1 MSFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLL 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L K +V+ R+LI+ PTRELAAQVA + E Y N+ + GG+ E Q +L Sbjct: 61 QRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVYGGVRIEPQIAQL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G DVLI TPGR+LD + + L N+EILV DEADRMLD+GFI ++ I SL+P RQ Sbjct: 121 QEGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + +++ + L PK IEV+ +ST + + F + ++K A L QL+ Sbjct: 181 TLLFSATFSKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPI--EQARKSAALIQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q Q ++F K+ L LE G + +IH N Q +R + L+ FK G IQ++ Sbjct: 239 Q-QHRWSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + V N+D+P E+Y+HRIGRTGRAG G A +L + ++I + + Sbjct: 298 VATDIAARGIDVSQLPCVVNYDLPYVPEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQS 357 Query: 360 IEKLIEK 366 +E+ +++ Sbjct: 358 LERYLDQ 364 >gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20] gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20] Length = 522 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 166/421 (39%), Positives = 258/421 (61%), Gaps = 13/421 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ GYV+ TPIQ KTIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLSQDILDAIATHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ LI+ PTRELA Q A+ +K G++ ++ V ++ GG Q + L+ Sbjct: 61 EHIDLSNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQNLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+LDH NR + ++N++ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLDDIESIIKNTPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+ NP+ I++ T + ++ FV + ++K + ++ Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RMRENEKFDTMTRIFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q K I+F K+ V L LE +G+ +HG++ Q+ R ++L+ FK I ++V Sbjct: 236 VQ-APKLAIVFGRTKRRVEELSRGLEARGYRAAGLHGDLTQQMRSRVLAQFKSHEINILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HV+NFD+P E+Y+HRIGRTGRAG G + TLVA ++ ++ A+ Sbjct: 295 ATDVAARGLDVKDVTHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAV 354 Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQ---HNHARKNNPIPQKSTGFDRRKKNYSSQ 416 E L +K++ L + +SL + KI A HN +K + + + T D+ YSS+ Sbjct: 355 EDLTKKRMTPL--EPASLKEARIGKIKNAADEVHNIVKKTD-VSEIQTEVDKLTNQYSSE 411 Query: 417 K 417 + Sbjct: 412 E 412 >gi|39995599|ref|NP_951550.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA] gi|39982362|gb|AAR33823.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA] gi|298504618|gb|ADI83341.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400] Length = 450 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 153/366 (41%), Positives = 229/366 (62%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+L L+P ++ AV GY +PTP+Q +P L+ D+ AQTGTGKTA+FVLP L Sbjct: 1 MTFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R PR L+L PTRELA QV D YG + ++GG+P+ AQ + L Sbjct: 61 QRLSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D ++ TPGR++D +R L ++ +E+LV+DEADRMLDMGF + I + P TRQ Sbjct: 121 SAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238 TLLF+ATM + +++ L+ P+RI++ +T E IE VA + + LL+ L Sbjct: 181 TLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNR--LLRHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + ++++ IIF K++ NL L+ QG S A+HG++ Q +R + ++ K+G I+L Sbjct: 239 I-TDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV NFD+P AE+Y+HRIGRTGRAG G A + + ++ ++ Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLA 357 Query: 359 AIEKLI 364 IE+ I Sbjct: 358 RIERYI 363 >gi|126174213|ref|YP_001050362.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|125997418|gb|ABN61493.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 467 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 155/363 (42%), Positives = 230/363 (63%), Gaps = 4/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ + GY +PTPIQ K IP++L+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + + R + R LIL PTRELA QV DN KY K LT + GG+ Q ++L Sbjct: 61 QMFADMPKIRAKRVRALILTPTRELAVQVEDNISKYAKYLPLTSMAMYGGVDAAPQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + I +LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ +++ ++NP IE+ S+ A I+ + KK ALL +L+ Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITV--DKDKKSALLSKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + +IF K+ L LEK+G + AIH Q R ++L +FK G ++ + Sbjct: 239 TEQ-AWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGRLRFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI + V N+D+P+ A++YIHRIGRTGRAG G+A + V+K+D +++ A Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357 Query: 360 IEK 362 IE+ Sbjct: 358 IER 360 >gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1] Length = 564 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 229/370 (61%), Gaps = 10/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADL + P V+ AV D GY P+PIQ TIP +L DV G+AQTGTGKTA+F +P+L Sbjct: 13 LTFADLQIHPAVLQAVADVGYETPSPIQAATIPAILDGSDVVGLAQTGTGKTAAFAIPIL 72 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++ R + L+L PTRELA QVA+ F +YG + + V + GG + Q L+ Sbjct: 73 SKIDTDS---RNTQALVLAPTRELALQVAEAFGRYGAHLRVNVLPIYGGASYVPQLSGLK 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA V++ TPGR++DH +G L +++++ LV+DEAD ML MGF ++ I + P +Q Sbjct: 130 RGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQV 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++K++ +L +P + V + + TAE I + Y +K L +LL+ Sbjct: 190 ALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYF--LVSYPRKMDALTRLLE 247 Query: 241 SQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + D M I+F K+ + L +GF+ AI+G+I Q R + +S K+GTI + Sbjct: 248 VEQGDAM---IVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDI 304 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV NFD+P+ E+Y+HRIGRTGRAGR G A V + + Sbjct: 305 LVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLG 364 Query: 359 AIEKLIEKKV 368 AIE++ +K+ Sbjct: 365 AIERVTRQKL 374 >gi|119944600|ref|YP_942280.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] gi|119863204|gb|ABM02681.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 403 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 156/375 (41%), Positives = 232/375 (61%), Gaps = 9/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L LS +V AV + GY PTPIQ + IP++L ++ AQTGTGKTASFVLP+L Sbjct: 1 MLFSTLKLSDPIVKAVTELGYQTPTPIQEQAIPVILAGKNLIAAAQTGTGKTASFVLPIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R + R LIL PTRELA QV +N +YGK L + GG+ E Q ++L Sbjct: 61 QNLIDAPAVRAKRIRVLILTPTRELAVQVENNIAQYGKYLPLKSMAMYGGVDSEPQKQQL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + R + + +E+LVIDEADRMLDMGF+P I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTRRAIHFDELEVLVIDEADRMLDMGFLPDINKIVERLPLQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++D+++ +++ + + I ++ TA IE C ++ K ALL L+ Sbjct: 181 NLLFSATLSDQVRFLAKTAITDAVEIAISPDYRTAPQIEQCLISV--DKDNKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IF K+ L LEK+G AIH Q R ++L++FK G + + Sbjct: 239 -IENQWQQALIFIETKRGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGQLNFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P+ A++Y+HRIGRTGRAG G+A + V+++D +++ A Sbjct: 298 VATGIAARGIDIDSLARVVNYDLPDEADDYVHRIGRTGRAGVSGEAISFVSRDDFRNLCA 357 Query: 360 IEK-----LIEKKVD 369 IE + KK+D Sbjct: 358 IENRLGEFITRKKID 372 >gi|239816654|ref|YP_002945564.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] gi|239803231|gb|ACS20298.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] Length = 601 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 236/373 (63%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +L L+P ++ AV + GY PTPIQ + IP VL+ HD+ G AQTGTGKTA+F LPML Sbjct: 1 MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L G + R L+L PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 HKLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLELDSTVIFGGVGMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL++G D+L+ TPGR+LD +G L ++ +++L++DEADRMLDMGFI ++ I +LVP Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE++ ++ L+NP+ I+V ++T + I V KK ALL Sbjct: 181 KEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQ--VIHPVGRGKKKALL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ +++ ++F K ++ L K G A+HGN Q +R + L+ FK G Sbjct: 239 AHII-NENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGD 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG G+A + V ++ Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEG 357 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++ + Sbjct: 358 FMQEIERFTKQTI 370 >gi|120610479|ref|YP_970157.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax citrulli AAC00-1] gi|120588943|gb|ABM32383.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1] Length = 599 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 158/370 (42%), Positives = 237/370 (64%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IP VL HD+ AQTGTGKTA+F LPML Sbjct: 1 MTFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60 Query: 61 TIL-EKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + G AR R L+L PTRELAAQV +N Y K+ ++ ++ GG+ Q + Sbjct: 61 HRLTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++RG D+L+ TPGR+LD +G L ++ +EILV+DEADRMLDMGFI ++ + +LVP + Sbjct: 121 IKRGVDILVATPGRLLDLQQQGFLDLSRVEILVLDEADRMLDMGFIHDVKKVLALVPRDK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+LLFSAT +DE+++++ L+NP+ I+V ++T + I V KK +L + Sbjct: 181 QSLLFSATFSDEIRELAGTLLKNPQSIQVTPRNTTVQRITQ--VIHPVGRGKKKQVLLHI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +Q Q ++F K N+ L K G + A+HGN Q +R + L+ FK G I+ Sbjct: 239 IQ-QHNWSQVLVFTRTKFGANNVAEFLTKNGVTAMALHGNKSQSARTQALAGFKSGDIRA 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ HV N+++PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 LVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMM 357 Query: 359 AIEKLIEKKV 368 IE+ ++++ Sbjct: 358 EIERFTKQEI 367 >gi|107099414|ref|ZP_01363332.1| hypothetical protein PaerPA_01000426 [Pseudomonas aeruginosa PACS2] Length = 624 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 166/406 (40%), Positives = 243/406 (59%), Gaps = 16/406 (3%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-------EKGRARVR 71 AGY +PTP+Q + IP VLQ D+ AQTGTGKT F LP+L L + R R Sbjct: 4 AGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHPDREHRHGPR 63 Query: 72 MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131 R L+L PTRELAAQV D+F+ Y ++ L + GG+ Q + L +G DVL+ PG Sbjct: 64 QARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALAKGVDVLVACPG 123 Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191 R+LD + K+ ++++EILV+DEADRMLDMGFI ++ + + +P RQ LLFSAT + ++ Sbjct: 124 RLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQNLLFSATFSKDI 183 Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251 ++ L NP+RIEV P++T E IE A +K ALL L+ + + ++F Sbjct: 184 VDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPA--PQKRALLAHLV-TVGAWEQVLVF 240 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 K L L K G AIHGN Q +R K L++FK ++++VA+D+AARGLDI Sbjct: 241 TRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATDIAARGLDI 300 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371 + HV N+++PN E+Y+HRIGRTGRAGR G+A +LVA ++ K + AIEK+ +++ Sbjct: 301 DQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIP-- 358 Query: 372 NGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 +GD +P ++AQ + PQK D+ +++ +K Sbjct: 359 DGDAQGFDPEAVLPEVAQP----EPREAPQKQPRRDKERRSSRERK 400 >gi|78776809|ref|YP_393124.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251] gi|78497349|gb|ABB43889.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM 1251] Length = 432 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 168/423 (39%), Positives = 254/423 (60%), Gaps = 19/423 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LG+ ++ A+ D GY KPT IQ + IPL+L + DV AQTGTGKTA+F L ML Sbjct: 1 MSFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGML 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L K + R R L++ PTREL+ Q+ ++ + Y KN + +A+L+GG E+Q K L Sbjct: 61 QRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKIL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D++I TPGR+L+H ++G L ++++EI V+DEADRMLDMGF+ I+ I ++P Q Sbjct: 121 KEGVDIVIATPGRVLEHVDKG-LSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRHQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +D+++K+S+ L P IE + +ST +TI VA KK LL ++ Sbjct: 180 TLLFSATFSDKVRKLSKLILTKPAFIETSKKNSTVDTINQ--VAYLVDTEKKAPLLAYII 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S++ + ++F K + L L+K G IHG+ Q +R+K L+ FKEG I+++ Sbjct: 238 GSRN-FRQVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDI ++ V N+++P+ E+Y+HR+GRTGRAGR G A +L+ + I Sbjct: 297 VATDIASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLIDIYEKFDIKD 356 Query: 360 IEKLIEKKVDW--------------LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 IEKLI K+ L+ D L +K+++ RK +KS Sbjct: 357 IEKLIGMKIPQEIIAGFEPDPTIRRLDQDELKLKSEHKKVEVKHERKPRKKEDGSKKSAN 416 Query: 406 FDR 408 + + Sbjct: 417 YKK 419 >gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus vestibularis F0396] gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus vestibularis F0396] Length = 529 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS + AV+ AG+ KP+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + L++ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 N---KIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +NNIE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ F+ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase domain-containing protein [Kangiella koreensis DSM 16069] gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM 16069] Length = 598 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 154/361 (42%), Positives = 231/361 (63%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLSP V+ ++ GY +P+PIQ +IP+++ D+ G AQTGTGKTA+F LPML+ Sbjct: 10 FDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMAGKDIIGQAQTGTGKTAAFALPMLSR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ A+ + L+L PTRELA QVA+ + Y KN L V + GG ++ Q ++L+R Sbjct: 70 LD---AKDNNTQLLVLAPTRELAIQVAEACQSYAKNMPGLNVLPIYGGQKYDIQLRQLKR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH RG L ++N++ LV+DEAD ML MGFI ++ + P TRQ Sbjct: 127 GAQIVVGTPGRVMDHIRRGTLKLDNLKALVLDEADEMLRMGFIDDVEWVLGHTPKTRQIA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++KV+E +L P+ I++ T +STA TI + + K L ++L++ Sbjct: 187 LFSATMPKEIKKVAEKYLHEPEHIKIQTKTSTATTINQRYWLVSGIH--KLDALTRVLET 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ IIF K L L +GF A++G+I Q +R +I+ K+G I +++A Sbjct: 245 EE-FDGMIIFVRTKIATTELADKLTARGFRAEALNGDIAQTTRERIVEKLKKGQIDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A VA + + + AIE Sbjct: 304 TDVAARGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAHRERRMLKAIE 363 Query: 362 K 362 + Sbjct: 364 R 364 >gi|33593984|ref|NP_881628.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|33564058|emb|CAE43326.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|332383401|gb|AEE68248.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS] Length = 574 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 154/373 (41%), Positives = 231/373 (61%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL+P ++ A+ +AG+ +PT +Q IP + D+ +QTG+GKTA+F+LP L Sbjct: 13 MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 72 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117 + + G V + + L+L PTRELA QVAD YG+N L A ++GG+P+ AQ K Sbjct: 73 NRIAHQPGNKGVGV-QVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLK 131 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L R DVL+ TPGR++DH G++ +N + LV+DEADRMLDMGFI I+ I +P Sbjct: 132 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKE 191 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236 RQTLLFSAT+ + +++E ++ P+RIE+ I + YA + K LL Sbjct: 192 RQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLL--YADDAAHKMRLLD 249 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ + I+F K+ +L L QGF+ A+HG+++QR R + L + G + Sbjct: 250 HVLRDA-RLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQL 308 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARG+D+ + H NFD+P +AE+Y+HRIGRTGRAGR G+AFTL + Sbjct: 309 RVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHK 368 Query: 357 IDAIEKLIEKKVD 369 + IE I + ++ Sbjct: 369 VRRIEHYIGQSIN 381 >gi|212709939|ref|ZP_03318067.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM 30120] gi|212687451|gb|EEB46979.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM 30120] Length = 657 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 154/381 (40%), Positives = 242/381 (63%), Gaps = 10/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS ++ A+ D GY KP+PIQ + IPL+L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 MSFADLGLSASILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAAFSLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 ++ A ++ P+ L+L PTRELA QVA+ + K+ N + V L GG ++ Q + L Sbjct: 67 HNID---ADLKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G V++ TPGR+LDH RG L ++N++ LV+DEAD ML MGFI ++NI S +P Q Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+++PK I + +T I + Y +K L + L Sbjct: 184 TALFSATMPEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGM--RKNEALVRFL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + +LE+ G++ A++G+++Q R + L K+G + ++ Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356 +A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++ Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360 Query: 357 IDAIEKLIEKKVDWLNGDLSS 377 ++ KL +V+ + DL S Sbjct: 361 VERTMKLTIPEVELPDADLLS 381 >gi|54302687|ref|YP_132680.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9] gi|46916111|emb|CAG22880.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9] Length = 431 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 168/416 (40%), Positives = 252/416 (60%), Gaps = 11/416 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA SP++V A+ + GY K TPIQ + IP + D+ AQTGTGKTA+F LP++ Sbjct: 1 MSFASQNFSPEIVRALTECGYEKLTPIQAQAIPHARRGSDILANAQTGTGKTAAFSLPII 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ILEK ++R R R LIL PTRELAAQ+A N +Y K +L A + GG +Q + Sbjct: 61 QQILEKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERT 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE+G D+L+ TPGR+++H + + + NIE LV DEADRMLDMGFI ++ + V Sbjct: 121 LEKGVDILVATPGRLIEHVDLKNVSLANIEFLVFDEADRMLDMGFITDMRKVMGEVNTNP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + ++ ++ + L+ PKRI V+ ++TA+T+ H V +K LL +L Sbjct: 181 QIMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVSH--VVYPVDQERKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ K ++F N K+ L L+K G HG+ Q +R + L FKEG ++ Sbjct: 239 IGKKN-WKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+++AARGLDI + HV NFD+P AE+Y+HRIGRTGRAG G A + V+KE+ + Sbjct: 298 MVATEVAARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAISFVSKEEELTLV 357 Query: 359 AIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDR 408 +E+LI + +V L + ++ + ++K++ + R NNP Q+S+ R Sbjct: 358 QVEQLIGQRIHRVQLLGYEPANRDAFVQKMNTKAAFKDRKGRTNNPTEQQSSSERR 413 >gi|77464394|ref|YP_353898.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1] gi|77388812|gb|ABA79997.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1] Length = 461 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 152/375 (40%), Positives = 228/375 (60%), Gaps = 7/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGLS +++ + A + +PTPIQ++ IP V+Q D+ G+AQTGTGKT +F LP+L Sbjct: 11 DFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLH 70 Query: 62 ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L G PRT LIL PTREL Q+A N E + K + V + GG Q ++ Sbjct: 71 RL-LGVGHPPPPRTIRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTER 129 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGAD+++ TPGR++D +R +++++ LV+DEAD+MLDMGFI ++ I +P R Sbjct: 130 LARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKR 189 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM +++++ +L+ P +++V P E I + K LL+ Sbjct: 190 QTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGV--HFTPQGDKAKLLESY 247 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ + ++F K L L GF +IHGN Q R + L+ F++G++ + Sbjct: 248 LQKHPG-EQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDV 306 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DIP V HV+N+D+PN ENY+HRIGRT RAG G A VA +++ Sbjct: 307 LVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFR 366 Query: 359 AIEKLIEKKVDWLNG 373 A+EKL+++ + + G Sbjct: 367 AVEKLLKQPIPVIGG 381 >gi|163739630|ref|ZP_02147039.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis BS107] gi|161387089|gb|EDQ11449.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis BS107] Length = 458 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 152/376 (40%), Positives = 234/376 (62%), Gaps = 9/376 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ +GL K++ + + GY PTPIQ + IP L DV G+AQTGTGKTA+F +P++ Sbjct: 19 EFSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIA 78 Query: 62 -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ GR + R L+L PTRELA Q+A N + + + L++GG+ Q +L Sbjct: 79 QMMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRL 138 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+LI TPGR+LD +RG L + + + LV+DEAD+MLD+GFI ++ I +L+P RQ Sbjct: 139 SRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQ 198 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM ++ +++ ++LQ+P RIEVN P A+ I + K L L Sbjct: 199 TMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSV-----HFIAKAEKLSLLK 253 Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + K+ ++F K + L +L GFS AIHGN Q R + L++FK G ++ Sbjct: 254 ELLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVK 313 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIPDV +V+N+++PN + Y+HRIGRT RAG+ G+A A +++ + Sbjct: 314 ILVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGEL 373 Query: 358 DAIEKLIEKKVDWLNG 373 AI+K + + +G Sbjct: 374 KAIQKTMNLNIPVASG 389 >gi|71734200|ref|YP_275777.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554753|gb|AAZ33964.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 570 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 19 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 78 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 79 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 135 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 136 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 195 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 196 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 253 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 254 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 312 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 313 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 373 RVTGQKV 379 >gi|28868981|ref|NP_791600.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. tomato str. DC3000] gi|301381308|ref|ZP_07229726.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. tomato Max13] gi|302061477|ref|ZP_07253018.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. tomato K40] gi|302130057|ref|ZP_07256047.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852221|gb|AAO55295.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. tomato str. DC3000] gi|330877010|gb|EGH11159.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330968143|gb|EGH68403.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016872|gb|EGH96928.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 562 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPTK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|88798356|ref|ZP_01113941.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp. MED297] gi|88778796|gb|EAR09986.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp. MED297] Length = 433 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 154/374 (41%), Positives = 230/374 (61%), Gaps = 5/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ ++ AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP++ Sbjct: 1 MQFSELALADPILKAVTEQGYTTPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPII 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 I E + R L+L PTRELAAQV DN Y K ++ ++ GG+ Q +K Sbjct: 61 QHLITENRPVKANRCRVLVLTPTRELAAQVEDNVTAYAKYTDVRSEVVFGGVKINPQMQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD ++ + ++E+LV+DEADRMLDMGFI I+ I L+P R Sbjct: 121 LRRGVDILVATPGRLLDLHSQNAIDFRDLEVLVLDEADRMLDMGFIHDIRRIMRLLPTQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q L+FSAT +DE++ +++ ++NP + V ++TAE + + +KK ALL L Sbjct: 181 QNLMFSATFSDEIRALAKTIVENPVEVSVTPKNTTAERVRQQVIPV--DKAKKTALLIDL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++T ++F K + L K AIHGN Q +R + LS FK I++ Sbjct: 239 LK-KETWHQVLVFSRTKHGANRIAEKLNKAKIPAAAIHGNKSQGARTRALSEFKSNDIRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NFD+PN AE+Y+HRIGRTGRAG G A + ++++ + Sbjct: 298 LVATDIAARGIDIDQLPHVINFDLPNVAEDYVHRIGRTGRAGSDGDAISFASRDEADLLA 357 Query: 359 AIEKLIEKKVDWLN 372 A++ I + ++ ++ Sbjct: 358 AVQNFIGQVIERVD 371 >gi|300722435|ref|YP_003711723.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Xenorhabdus nematophila ATCC 19061] gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Xenorhabdus nematophila ATCC 19061] Length = 498 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 160/371 (43%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LGL ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MNFESLGLKADILRAVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGRARV--RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + +V R P R LIL PTRELAAQV +N Y K L ++ GG+ Q Sbjct: 61 QRLSESPTQVKGRRPVRALILTPTRELAAQVGENVHNYSKYLKLRSFVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + ++++EIL++DEADRMLDMGFI I+ I + +P Sbjct: 121 KLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRILNKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++ L +P +EV +S +E I + +K LL Sbjct: 181 RQNLLFSATFSDEIKNLANKLLNDPVSVEVARRNSASEQIAQSI--HFVDKKRKGELLSY 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ SQ+ + ++F K L L K G + AIHGN Q +R + L++FK G I+ Sbjct: 239 MIGSQN-WQQVLVFTRTKHGANKLAELLNKDGVTAAAIHGNKSQGARTRALADFKSGQIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI + HV N+++PN AE+Y+HRIGRTGRA G+A +LV ++ K + Sbjct: 298 ALVATDIAARGLDIDQLPHVVNYELPNVAEDYVHRIGRTGRADATGQAISLVCVDEHKLL 357 Query: 358 DAIEKLIEKKV 368 IE+L+++++ Sbjct: 358 KDIERLLKREI 368 >gi|126463236|ref|YP_001044350.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126104900|gb|ABN77578.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 461 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 152/375 (40%), Positives = 229/375 (61%), Gaps = 7/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGLS +++ + A + +PTPIQ++ IP V+Q D+ G+AQTGTGKT +F LP+L Sbjct: 11 DFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLH 70 Query: 62 ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L G PRT LIL PTREL Q+A N E + K + V + GG Q ++ Sbjct: 71 RL-LGVGHPPPPRTIRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTER 129 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGAD+++ TPGR++D +R +++++ LV+DEAD+MLDMGFI ++ I +P R Sbjct: 130 LARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKR 189 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM +++++ +L+ P +++V P E I + K LL+ Sbjct: 190 QTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGV--HFTPQGDKAKLLESY 247 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ + + ++F K L L GF +IHGN Q R + L+ F++G++ + Sbjct: 248 LQ-KHPREQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDV 306 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DIP V HV+N+D+PN ENY+HRIGRT RAG G A VA +++ Sbjct: 307 LVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFR 366 Query: 359 AIEKLIEKKVDWLNG 373 A+EKL+++ + + G Sbjct: 367 AVEKLLKQPIPVIGG 381 >gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713] Length = 492 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/372 (42%), Positives = 234/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ AV +G+ + TPIQ +TIPLVL +DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ +R + +I+ PTRELA Q + GK V ++ GG Q K+LE Sbjct: 61 QQLD---LDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + +L+ TPGR+LDH RG + + +++ L++DEAD MLDMGF+ I+ I VP RQ Sbjct: 118 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E+ K+ E F+ NP+ +++ T + ++ FV T + +K ++ +L+ Sbjct: 178 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKT--KEFEKFDIMTRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F K+ V L LE +G++ IHG++ Q+ RM +L FK G + ++ Sbjct: 236 DVQ-APELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG HG + T V ++ ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354 Query: 360 IEKLIEKKVDWL 371 IEKL +K++D L Sbjct: 355 IEKLTKKRMDPL 366 >gi|293602448|ref|ZP_06684894.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553] gi|292819210|gb|EFF78245.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553] Length = 597 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 156/377 (41%), Positives = 231/377 (61%), Gaps = 18/377 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+P ++ AV +AG+ PT +Q IP L HD+ +QTG+GKTA+F+LP L Sbjct: 1 MSFENLGLAPALLSAVQEAGFNTPTAVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60 Query: 61 TILEKGRARVRMP-------RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112 + +MP + L+L PTRELA QV + YG+ +L A ++GG+P+ Sbjct: 61 HRI------AQMPANKGVGVQVLVLTPTRELALQVTEATATYGRKLADLRTATVVGGMPY 114 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 AQ K L R DVL+ TPGR++DH G++ +N + LV+DEADRMLDMGFI I+ I S Sbjct: 115 GAQLKALSRRVDVLVATPGRLIDHLQSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVS 174 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKK 231 +P RQTLLFSAT+ + K++ +++P+RIE+ I + YA S K Sbjct: 175 RLPEDRQTLLFSATLDGTIAKLAAKMMRDPQRIEMAGAKEKHTNITQSLL--YADDASHK 232 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL +L+ + I+F + K+ +L L QGF+ A+HG+++QR R + LS Sbjct: 233 MQLLDHVLRDA-KLDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQL 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G ++++VA+D+AARG+D+ + H NFD+P +AE+Y+HRIGRTGRAGR+G AFTL Sbjct: 292 QRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLATH 351 Query: 352 EDIKHIDAIEKLIEKKV 368 + + IE I + + Sbjct: 352 SERHKVRRIEHYIGQSI 368 >gi|221640283|ref|YP_002526545.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides KD131] gi|332559285|ref|ZP_08413607.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides WS8N] gi|221161064|gb|ACM02044.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides KD131] gi|332276997|gb|EGJ22312.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides WS8N] Length = 453 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 152/375 (40%), Positives = 228/375 (60%), Gaps = 7/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGLS +++ + A + +PTPIQ++ IP V+Q D+ G+AQTGTGKT +F LP+L Sbjct: 3 DFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLH 62 Query: 62 ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L G PRT LIL PTREL Q+A N E + K + V + GG Q ++ Sbjct: 63 RL-LGVGHPPPPRTIRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTER 121 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGAD+++ TPGR++D +R +++++ LV+DEAD+MLDMGFI ++ I +P R Sbjct: 122 LARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKR 181 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM +++++ +L+ P +++V P E I + K LL+ Sbjct: 182 QTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGV--HFTPQGDKAKLLESY 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ + ++F K L L GF +IHGN Q R + L+ F++G++ + Sbjct: 240 LQKHPG-EQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DIP V HV+N+D+PN ENY+HRIGRT RAG G A VA +++ Sbjct: 299 LVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFR 358 Query: 359 AIEKLIEKKVDWLNG 373 A+EKL+++ + + G Sbjct: 359 AVEKLLKQPIPVIGG 373 >gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652] gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652] Length = 565 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 155/375 (41%), Positives = 234/375 (62%), Gaps = 4/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LG+S +V + G PTPIQ + IPL+LQ D+ G+AQTGTGKTA+F LP++ Sbjct: 24 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIGLAQTGTGKTAAFGLPLIE 83 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L ++ R R RTLIL PTREL Q+ADN +K+ + L + +++GG+ Q +L Sbjct: 84 KLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSPLRINVVVGGVSINKQQLQL 143 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+G DVL+ TPGR+LD NR + + + LV+DEAD+MLD+GF+ ++ I LVP RQ Sbjct: 144 EKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQ 203 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++ +L +P ++EV P A+ +E +V A + K LL++ L Sbjct: 204 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQ-YVHFVAGKNDKTELLRKSL 262 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ I+F K L L+ G+SV +IHGN Q R + L F++G+I+ + Sbjct: 263 -TENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DIP V HV+N+D+P + Y+HRIGRT RAGR G A A ++ K + Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381 Query: 360 IEKLIEKKVDWLNGD 374 IE+L+ + +G+ Sbjct: 382 IERLMGIDIAVASGE 396 >gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 576 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 153/372 (41%), Positives = 237/372 (63%), Gaps = 11/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L +++ A+ GY KPTPIQ + IPL+++ HD+ G AQTGTGKTA+F LPML Sbjct: 7 MTFKDLNLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPML 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ++ + ++ L+L PTRELA QVA+ F+ Y + L V + GG ++ Q ++L Sbjct: 67 ANVDANNSNTQL---LVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA V++ TPGR++DH +G L ++N++ LV+DEAD ML MGFI ++ I S P RQ Sbjct: 124 RRGAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237 T LFSATM D ++K+++ +L +PK++++ + +TA TI+ +C VA + K L + Sbjct: 184 TALFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGH----HKLEALTR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ ++ IIF K + L L +G++V ++G+I Q SR + + K G I Sbjct: 240 IMEVEE-FDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKID 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARGLD+ V HV N+DVP E+Y+HRIGRTGRAGR G A ++ + + + Sbjct: 299 ILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRML 358 Query: 358 DAIEKLIEKKVD 369 +IE+ + +D Sbjct: 359 FSIERATRQSID 370 >gi|149914630|ref|ZP_01903160.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp. AzwK-3b] gi|149811423|gb|EDM71258.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp. AzwK-3b] Length = 470 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 162/375 (43%), Positives = 238/375 (63%), Gaps = 9/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++GL +V + G +PTPIQ IP L DV G+AQTGTGKTA+F LP+L Sbjct: 34 FEEMGLPGPLVKKLALMGITEPTPIQTHAIPFALDSEDVMGLAQTGTGKTAAFGLPLLAK 93 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L E G+ + R+LIL PTRELA Q+ D K+ + VAL++GG AQ K+++ Sbjct: 94 LMEEPGKPAPKAVRSLILAPTRELAGQIRDTLLPLVKDTPIKVALVVGGASIGAQIKRMQ 153 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR+LD +R L +++ LV+DEAD+MLD+GFI ++ I L+P TRQT Sbjct: 154 MGTDVLVATPGRLLDLLDRRALSLSDTRFLVLDEADQMLDLGFIHALRKIAGLLPSTRQT 213 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQL 238 +LFSATM ++++++ ++L +PKR++V+ P A+ + F+A A K LL +L Sbjct: 214 MLFSATMPKQMEEIAGSYLTHPKRVQVSPPGKAADKVTQGVHFIAKAA----KGDLLVEL 269 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + ++F K L LE+ G++V AIHGN Q R + L F++G +++ Sbjct: 270 LDKHRE-ELALVFARTKHGSDKLARKLEQAGYAVAAIHGNKSQGQRERALRAFRDGEVRV 328 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIPDV HV+NFD+PN ENY+HRIGRT RAGR G A A +++ + Sbjct: 329 LVATDVAARGLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGRDGAAVAFCAPDEMGELK 388 Query: 359 AIEKLIEKKVDWLNG 373 I+K+++ + L+G Sbjct: 389 DIQKVMKMSIPVLSG 403 >gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium sp. 4-46] gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46] Length = 499 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 152/370 (41%), Positives = 226/370 (61%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+ ++ A+ + GYV PTPIQ + +P + D+CGIAQTGTGKTA+F LP+L Sbjct: 4 FVDFGLAAPILKALAETGYVTPTPIQAQAVPQAMAGRDLCGIAQTGTGKTAAFALPILHR 63 Query: 63 LEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + R PR L+L PTRELA+Q+A++F YGK + ++ GG+ Q + Sbjct: 64 LASETPQRRAPRRGCRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQERA 123 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+L+ TPGR+LD +R L ++ +E LV+DEAD+MLD+GFI ++ I +L+P R Sbjct: 124 LANGVDILVATPGRLLDLIDRRSLSLDAVEYLVLDEADQMLDLGFIHALKRIVTLLPKAR 183 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM + ++ +L++P ++ V ++TAE +E V + K ALL + Sbjct: 184 QSLFFSATMPRNIATLAAQYLRDPVQVAVTPVATTAERVEQRVV--HVPTGAKQALLATI 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++ ++F K + LEK G AIHGN Q R + L+ F+ G ++ Sbjct: 242 LRDA-SIDRVLVFTRTKHGADRVVRGLEKAGIGSAAIHGNKSQPQRERALAAFRAGICRV 300 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ V HV NFD+PN E Y+HRIGRT RAG G A + E+ ++ Sbjct: 301 LVATDIAARGIDVEGVSHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNDEERAYLR 360 Query: 359 AIEKLIEKKV 368 IE+L +KV Sbjct: 361 DIERLTRQKV 370 >gi|84394092|ref|ZP_00992827.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01] gi|86146725|ref|ZP_01065046.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222] gi|84375283|gb|EAP92195.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01] gi|85835572|gb|EAQ53709.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222] Length = 428 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 167/419 (39%), Positives = 252/419 (60%), Gaps = 13/419 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ G +P++V A+ + GY K TPIQ K IP+ + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFSSQGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L G+ R R LIL PTRELAAQ+A N + Y K L+V+ + GG +Q ++ Sbjct: 61 QHLLNSGKKASRGTARGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQ 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H G + + N+E LV DEADR+LDMGFI ++ I V + Sbjct: 121 LELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L ++S + L+ PKRI V +STA T+ H V +K LL +L Sbjct: 181 QIMMFSATTSTQLNQLSVDILRKPKRISVERENSTASTVGH--VVYPVDQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ ++ L+ G HG+ Q +R + L +FKEG ++ Sbjct: 239 I-GRKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGRARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 298 MVATDVAARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAISFVNREEELTVV 357 Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNP--IPQKSTGFDRR 409 +E LI+ ++V+ + + +EK++ ++ RKNN PQ +RR Sbjct: 358 QVETLIQQRIRRVEQPGYEPKKRDAYIEKLNTKSAYKNRQGRKNNANEEPQDQASAERR 416 >gi|116617572|ref|YP_817943.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096419|gb|ABJ61570.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 528 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 153/371 (41%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ GYV+ TPIQ KTIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ LI+ PTRELA Q A+ +K G++ + V ++ GG Q + L+ Sbjct: 61 EHIDLNNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+LDH NR + ++N+ LV+DEAD ML+MGF+ I+ I S P RQT Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDNVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+ NP+ I++ T + ++ FV + ++K + ++ Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RMRENEKFDTMTRIFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q K I+F K+ V L LE +G+ +HG++ Q+ R ++L+ FK I ++V Sbjct: 236 VQ-APKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HV+NFD+P E+Y+HRIGRTGRAG G + T VA ++ ++ A+ Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAV 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 EDLTKKRMTPL 365 >gi|315619798|gb|EFV00317.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431] Length = 449 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/367 (43%), Positives = 234/367 (63%), Gaps = 8/367 (2%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--IL 63 +GLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L I Sbjct: 1 MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60 Query: 64 EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q KL G Sbjct: 61 RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P RQ LL Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQS 241 FSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL ++ Sbjct: 181 FSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLSHMI-G 236 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++F K +L L K G AIHGN Q +R + L++FK G I+++VA Sbjct: 237 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K + IE Sbjct: 297 TDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIE 356 Query: 362 KLIEKKV 368 KL++K++ Sbjct: 357 KLLKKEI 363 >gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118] gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118] Length = 492 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/372 (42%), Positives = 234/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ AV +G+ + TPIQ +TIPLVL +DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ +R + +I+ PTRELA Q + GK V ++ GG Q K+LE Sbjct: 61 QQLD---LDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + +L+ TPGR+LDH RG + + +++ L++DEAD MLDMGF+ I+ I VP RQ Sbjct: 118 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E+ K+ E F+ NP+ +++ T + ++ FV T + +K ++ +L+ Sbjct: 178 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKT--KEFEKFDIMTRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F K+ V L LE +G++ IHG++ Q+ RM +L FK G + ++ Sbjct: 236 DVQ-APELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG HG + T V ++ ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354 Query: 360 IEKLIEKKVDWL 371 IEKL +K++D L Sbjct: 355 IEKLTKKRMDPL 366 >gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 492 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/372 (42%), Positives = 234/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ AV +G+ + TPIQ +TIPLVL +DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ +R + +I+ PTRELA Q + GK V ++ GG Q K+LE Sbjct: 61 QQLD---LDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + +L+ TPGR+LDH RG + + +++ L++DEAD MLDMGF+ I+ I VP RQ Sbjct: 118 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E+ K+ E F+ NP+ +++ T + ++ FV T + +K ++ +L+ Sbjct: 178 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKT--KEFEKFDIMTRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F K+ V L LE +G++ IHG++ Q+ RM +L FK G + ++ Sbjct: 236 DVQ-APELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG HG + T V ++ ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354 Query: 360 IEKLIEKKVDWL 371 IEKL +K++D L Sbjct: 355 IEKLTKKRMDPL 366 >gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol] gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol] Length = 513 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/384 (41%), Positives = 239/384 (62%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+P+++ AV AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ A R+ + L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 61 NKID---ADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + +E LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++ P+ +++ TA+ I+ +V + + +K ++ +LL Sbjct: 178 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ ++ L PP EK Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371 >gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1] gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200] gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3] gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8] gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5] gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96] gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704] gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1] gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1] gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6] gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188] gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis AR01/DG] gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11] gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98] gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1] gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis TUSoD Ef11] gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1] gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200] gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3] gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8] gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5] gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96] gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704] gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1] gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1] gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6] gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188] gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG] gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11] gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98] gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1] gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis TUSoD Ef11] gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62] Length = 515 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/384 (41%), Positives = 239/384 (62%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+P+++ AV AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ A R+ + L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 61 NKID---ADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + +E LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++ P+ +++ TA+ I+ +V + + +K ++ +LL Sbjct: 178 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ ++ L PP EK Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371 >gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2] gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2] Length = 515 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/384 (41%), Positives = 239/384 (62%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+P+++ AV AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ A R+ + L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 61 NKID---ADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + +E LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++ P+ +++ TA+ I+ +V + + +K ++ +LL Sbjct: 178 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ ++ L PP EK Sbjct: 355 ENLTKKR-------MTPLRPPTEK 371 >gi|229542534|ref|ZP_04431594.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1] gi|229326954|gb|EEN92629.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1] Length = 475 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 234/368 (63%), Gaps = 10/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L LSP ++ AV G+ + +PIQ TIPL +Q D+ G AQTGTGKTA+F +P++ Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLI-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK R R + +I+ PTRELA QV++ + G++ + V + GG Q + L+ Sbjct: 62 -EKIDHRSRNIQGIIIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRALKNH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH +RG L ++++ LV+DEAD ML+MGFI I+ I S VP RQT+L Sbjct: 121 PQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--Q 240 FSATM D ++K++E F+ NP+ + V T +IE +V Q +K +L +LL Q Sbjct: 181 FSATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYVK--VQEREKFDVLSRLLDVQ 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S D I+F K+ V L ++L +G+ IHG++ Q R+ +L FK+G I ++V Sbjct: 239 SPDL---AIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAGR G A T V ++ ++ + Sbjct: 296 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTV 355 Query: 361 EKLIEKKV 368 E+ +K++ Sbjct: 356 EQTTKKRM 363 >gi|309786547|ref|ZP_07681170.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae 1617] gi|308925610|gb|EFP71094.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae 1617] Length = 449 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/367 (43%), Positives = 234/367 (63%), Gaps = 8/367 (2%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--IL 63 +GLSP ++ AV + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L I Sbjct: 1 MGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 60 Query: 64 EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + A+ R P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q KL G Sbjct: 61 RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVL+ TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + + +P RQ LL Sbjct: 121 VDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQS 241 FSAT +D+++ ++E L NP IEV ++ ++ + +H + +K LL ++ Sbjct: 181 FSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH---FVDKKRKRELLSHMI-G 236 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++F K +L L K G AIHGN Q +R + L++FK G I+++VA Sbjct: 237 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI ++ HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K + IE Sbjct: 297 TDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIE 356 Query: 362 KLIEKKV 368 KL++K++ Sbjct: 357 KLLKKEI 363 >gi|330953563|gb|EGH53823.1| helicase [Pseudomonas syringae Cit 7] Length = 557 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 150/367 (40%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P +RQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPESRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|33594923|ref|NP_882566.1| putative ATP-dependent RNA helicase [Bordetella parapertussis 12822] gi|33564999|emb|CAE39946.1| putative ATP-dependent RNA helicase [Bordetella parapertussis] Length = 582 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 154/373 (41%), Positives = 231/373 (61%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL+P ++ A+ +AG+ +PT +Q IP + D+ +QTG+GKTA+F+LP L Sbjct: 37 MSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPAL 96 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117 + + G V + + L+L PTRELA QVAD YG+N L A ++GG+P+ AQ K Sbjct: 97 NRIAHQPGNKGVGV-QVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLK 155 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L R DVL+ TPGR++DH G++ +N + LV+DEADRMLDMGFI I+ I +P Sbjct: 156 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKE 215 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236 RQTLLFSAT+ + +++E ++ P+RIE+ I + YA + K LL Sbjct: 216 RQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLL--YADDAAHKMRLLD 273 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ + I+F K+ +L L QGF+ A+HG+++QR R + L + G + Sbjct: 274 HVLRDA-RLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQL 332 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARG+D+ + H NFD+P +AE+Y+HRIGRTGRAGR G+AFTL + Sbjct: 333 RVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHK 392 Query: 357 IDAIEKLIEKKVD 369 + IE I + ++ Sbjct: 393 VRRIEHYIGQSIN 405 >gi|319794896|ref|YP_004156536.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS] gi|315597359|gb|ADU38425.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS] Length = 605 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 236/373 (63%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +L L+P ++ AV + GY PTPIQ + IP VL+ HD+ G AQTGTGKTA+F LPML Sbjct: 1 MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L R+ R L+L PTRELAAQV ++ YGK L ++ GG+ Q Sbjct: 61 HKLTMSRSATNKFGGVGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL++G D+L+ TPGR+LD +G L ++ +++L++DEADRMLDMGFI ++ I +LVP Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE++ ++ L+NP+ I+V ++T + I V KK ALL Sbjct: 181 KEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQ--VIHPVGRGKKKALL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ +++ ++F K ++ L K G A+HGN Q +R + L+ FK G Sbjct: 239 AHII-NENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGD 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAG G+A + V ++ Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEG 357 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++ + Sbjct: 358 FMQEIERFTKQTI 370 >gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c] gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c] Length = 446 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 232/372 (62%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LGL P ++ A+ + GY PTPIQ + IPL L HD+ AQTGTGKTA+F LP+L Sbjct: 1 MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60 Query: 61 TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + V PR L+L PTRELA QV D+ Y K ++ A++ GG+ Q Sbjct: 61 QRLMAASSNVGAGKPRALVLTPTRELATQVYDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-T 177 L RG D+LI PGR++DH R + ++ + ILV+DEADRMLDMGF+P I+ I +P Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + +++++ F+ P+ + V + ++ AETI H S+K LL Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPV--DVSRKRELLLH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL +QD+ + ++F K L LEK G AIHGN Q R++ L++FK G + Sbjct: 239 LL-AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LV +ED K + Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357 Query: 358 DAIEKLIEKKVD 369 I +L+++ +D Sbjct: 358 RQIVRLLDRDMD 369 >gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] Length = 506 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 150/368 (40%), Positives = 232/368 (63%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D GL+ V+ A+ +AGYV PTPIQ + +P ++ D+CGIAQTGTGKTA+F LP+L Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE RA R R L+L PTRELA+Q+A++F YG++ T ++ GG+ Q + + Sbjct: 64 LSLENRRAPRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNINRQERAIA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR++D +R L ++ +EILV+DEAD+MLD+GFI ++ I ++P RQ+ Sbjct: 124 PGVDILVATPGRLIDLVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQS 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM + +++ +L NP ++ V ++TAE ++ + + K ALL +L+ Sbjct: 184 LFFSATMPKNIAGLADQYLTNPVQVAVTPVATTAERVDQQVI--FCHTGAKQALLNHVLR 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++F K + L+K G AIHGN Q R + L+ F++G+ +++V Sbjct: 242 D-PKIERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+D+PN E+Y+HRIGRT RAG G A + E+ ++ I Sbjct: 301 ATDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGMAISFCNDEERAYLLDI 360 Query: 361 EKLIEKKV 368 E+ +KV Sbjct: 361 ERTTRQKV 368 >gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria subflava NJ9703] gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria subflava NJ9703] Length = 463 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 170/440 (38%), Positives = 259/440 (58%), Gaps = 30/440 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ D GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 4 FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 64 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTA 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 124 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A A KK LL++ Sbjct: 184 RQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDA--LKKRNLLER 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ + +IHG+ Q+SR++ L+ FKEGT++ Sbjct: 242 LIVDLH-MNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ K + K Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360 Query: 358 DAIEKLIEKKVD----------WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407 ++I++L ++ W D N + QHN +R S D Sbjct: 361 ESIKELTGSDLNVERIEGFEPYWWGND----NQDEAEAQPVQHNDSR--------SRRED 408 Query: 408 RRKKNYSSQKSHIPLKESEK 427 R K+N + KS K++E+ Sbjct: 409 RNKRNEYANKSDKSSKKAEE 428 >gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1] gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1] Length = 460 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 230/368 (62%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLG+S ++ A AG +P PIQ + IP L D+ G+AQTG+GKTA+F LP+L+ Sbjct: 28 FADLGISETLLKAAAAAGMTEPKPIQKEAIPPFLAGSDILGVAQTGSGKTAAFSLPILSK 87 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R R R LIL PTRELA Q+ + K +++ AL++GG+ +Q K++ Sbjct: 88 IIGLGTKRRPRTARALILVPTRELAVQIEKVVRELAKGAHVSTALVLGGVSRHSQIKRMA 147 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR+ D G ++++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 148 QGVDVLIATPGRLTDLVRDGAVVLSETTWLVLDEADRMLDMGFINDVRRIAKATHPARQT 207 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E++ ++ + L+ P RIEV+ +TA I + A+ +K LL ++L Sbjct: 208 ALFSATMPREIEALASSLLKEPVRIEVSPQGTTAAEIRQSVI--MARTKQKRKLLSEML- 264 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + M IIF K + L+ GF IHGN Q +R + L++F+EG ++++V Sbjct: 265 ADEKMAQVIIFSRTKHGADRVTKDLQHDGFQAAVIHGNKSQNARQRALNDFREGAVRILV 324 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P + HV NFD+P+ AE+Y+HRIGRTGR G G+A TL ++ + + Sbjct: 325 ATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGAEGEAITLCDPGEVSKLRQV 384 Query: 361 EKLIEKKV 368 E++I ++ Sbjct: 385 ERVIRNRL 392 >gi|213968691|ref|ZP_03396833.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. tomato T1] gi|213926624|gb|EEB60177.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. tomato T1] Length = 573 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 19 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 78 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 79 IDPTK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 135 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 136 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 195 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 196 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 253 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 254 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 312 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 313 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 373 RVTGQKV 379 >gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 605 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 157/370 (42%), Positives = 237/370 (64%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IP VL HD+ AQTGTGKTA+F LPML Sbjct: 1 MTFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60 Query: 61 TIL-EKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + G AR R L+L PTRELAAQV +N Y K+ ++ ++ GG+ Q + Sbjct: 61 HRLTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++RG D+L+ TPGR+LD +G L ++ +EILV+DEADRMLDMGFI ++ + +LVP + Sbjct: 121 IKRGVDILVATPGRLLDLQQQGFLDLSKVEILVLDEADRMLDMGFIHDVKKVLALVPRDK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+LLFSAT +DE+++++ L+NP+ I+V ++T + I V KK +L + Sbjct: 181 QSLLFSATFSDEIRELANTLLKNPQSIQVTPRNTTVQRITQ--VIHPVGRGKKKQVLLHI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +Q + ++F K N+ L K G + A+HGN Q +R + L+ FK G I+ Sbjct: 239 IQEHN-WSQVLVFTRTKFGANNVAEFLTKNGVNAMALHGNKSQSARTQALAGFKSGDIRA 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ HV N+++PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 LVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMM 357 Query: 359 AIEKLIEKKV 368 IE+ ++++ Sbjct: 358 EIERFTKQEI 367 >gi|323497478|ref|ZP_08102496.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] gi|323317561|gb|EGA70554.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] Length = 426 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 165/408 (40%), Positives = 241/408 (59%), Gaps = 15/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA SP++V A+ + GY K TP+Q K IP + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFASQNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIV 60 Query: 61 -TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL+ + R R R +IL PTRELAAQ+A N + Y K + + GG +Q K Sbjct: 61 QNILDNAKPRQRHQARAVILAPTRELAAQIATNIQDYTKYTEIKTVAIYGGAKMSSQQKA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G DVL+ TPGR+++H + + + N+E LV DEADRMLDMGFI I+NI S V Sbjct: 121 LEAGVDVLVATPGRLIEHMDLNNVSLVNLEFLVFDEADRMLDMGFISAIENIMSGVATKP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT + ++ ++ L+ PKR+ V ++TAET+ H V + +K LL +L Sbjct: 181 QTMLFSATFSAQMNTLATKILRQPKRVSVARENATAETVAH--VVYPVEQERKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ L L+ G HG+ Q +R + L FK G ++ Sbjct: 239 I-GRKNWQQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 M+A+D+AARGLDI ++ HV NFD+P AE+Y+HRIGRTGRAG+ G A + V +++ + Sbjct: 298 MIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNRDEELTLQ 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398 +E LI +++ +L P LEK+ ++ R+NNP Sbjct: 358 QVEMLIGQRI--YRKELEGYEPKNRDALLEKMHSKPAFKNRKTRQNNP 403 >gi|160875166|ref|YP_001554482.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|160860688|gb|ABX49222.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|315267360|gb|ADT94213.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 467 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 154/363 (42%), Positives = 229/363 (63%), Gaps = 4/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ + GY +PTPIQ K IP++ + ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSDPILRAITELGYSQPTPIQEKAIPVIFKGKNLLAGAQTGTGKTASFVLPIL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + + R + R LIL PTRELA QV DN KY K LT + GG+ Q ++L Sbjct: 61 QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + I +LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ +++ ++NP IE+ S+ A I+ + KK ALL +L+ Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITV--DKDKKSALLSKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + +IF K+ L LEK+G + AIH Q R ++L +FK G ++ + Sbjct: 239 TEQ-AWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI + V N+D+P+ A++YIHRIGRTGRAG G+A + V+K+D +++ A Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357 Query: 360 IEK 362 IE+ Sbjct: 358 IER 360 >gi|153000529|ref|YP_001366210.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|151365147|gb|ABS08147.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] Length = 467 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 155/363 (42%), Positives = 229/363 (63%), Gaps = 4/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ + GY +PTPIQ K IP++L+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSNPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPIL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + + R + R LIL PTRELA QV DN KY K LT + GG+ Q + L Sbjct: 61 QMFADMPKIRAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQSL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + I +LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ +++ ++NP IE+ S+ A I+ + KK ALL +L+ Sbjct: 181 NLLFSATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITV--DKDKKSALLSKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + +IF K+ L LEK+G + AIH Q R ++L +FK G ++ + Sbjct: 239 TEQ-AWEQALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI + V N+D+P+ A++YIHRIGRTGRAG G+A + V+K+D +++ A Sbjct: 298 VATGVASRGIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCA 357 Query: 360 IEK 362 IE+ Sbjct: 358 IER 360 >gi|110680325|ref|YP_683332.1| putative ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh 114] gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh 114] Length = 433 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 160/390 (41%), Positives = 242/390 (62%), Gaps = 15/390 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF + L P++V + G PTPIQ + IP + DV G+AQTGTGKTA+F +P++ Sbjct: 3 DFEMMNLPPELVARLGRMGLKDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62 Query: 62 -ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +LE GR + R L+L PTRELA Q++ N + +N + VA+++GG Q K+L Sbjct: 63 QMLELDGRPAPKSVRGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQIKRL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG D+L+ TPGR+LD +R + ++ LV+DEAD+MLDMGFI ++ I S++P RQ Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVRLDEAVFLVLDEADQMLDMGFIHDLRKIASVIPKERQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237 T+LFSATM ++ +++ ++L++P R+EV+ P A+ + E F+A S+K LL + Sbjct: 183 TMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAK----SEKPGLLIE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L + ++F K L SL K G++ +IHGN Q R + ++ FK G I+ Sbjct: 239 MLDKHRD-ERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIK 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIPDV HV+N+D+PN +NY+HRIGRT RAG+ G A A +++ + Sbjct: 298 VLVATDVAARGLDIPDVKHVYNYDLPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDI 387 AI+K + + +G P E DI Sbjct: 358 KAIQKTMGISIPVGSGR------PWEAADI 381 >gi|119898413|ref|YP_933626.1| ATP-dependent RNA helicase [Azoarcus sp. BH72] gi|119670826|emb|CAL94739.1| ATP-dependent RNA helicase [Azoarcus sp. BH72] Length = 650 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 223/368 (60%), Gaps = 6/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ A+ D GY P+PIQ IP +L HD+ G AQTGTGKTA+F LPML Sbjct: 7 FADLALPAPLLQALADVGYETPSPIQAACIPHLLAGHDILGEAQTGTGKTAAFALPMLAR 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ R P+ L+L PTRELA QVA+ F+KY + + V L GG Q ++L R Sbjct: 67 LDLAD---RRPQVLVLTPTRELAIQVAEAFQKYAHHLRDFHVLPLYGGQSMVVQLRQLSR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH RG L ++ + LV+DEAD ML MGFI ++ I P RQT Sbjct: 124 GAQIIVGTPGRVMDHLERGSLKLDTLSGLVLDEADEMLRMGFIEDVEWILEHTPSGRQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D +++V+ L+ PK +++ +ST I + + K L ++L + Sbjct: 184 LFSATMPDAIRRVAHQHLREPKEVKIRAATSTVSAISQRY--WLVRGVDKLDALTRILDA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + I+F K L LE +G++ A++G++ Q R +++ K G++ ++VA Sbjct: 242 EEKLDAAIVFVRTKTATTELADKLEARGYAAAALNGDMTQGLRERVIEQLKNGSLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+P + HV N+D+P E Y+HRIGRTGRAGR G A VA + + + AIE Sbjct: 302 TDVAARGIDVPRISHVINYDIPYDTEAYVHRIGRTGRAGREGSAILFVAPRESRMLKAIE 361 Query: 362 KLIEKKVD 369 + + ++ Sbjct: 362 RATRQPIE 369 >gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides DSM 12442] gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides DSM 12442] Length = 528 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 156/370 (42%), Positives = 233/370 (62%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQ 357 Query: 363 LIEKKVDWLN 372 ++K+D +N Sbjct: 358 TTKRKIDRMN 367 >gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides Rock3-17] gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides Rock3-17] Length = 536 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 156/370 (42%), Positives = 233/370 (62%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQ 357 Query: 363 LIEKKVDWLN 372 ++K+D +N Sbjct: 358 TTKRKIDRMN 367 >gi|254445656|ref|ZP_05059132.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] gi|198259964|gb|EDY84272.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] Length = 426 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 158/370 (42%), Positives = 229/370 (61%), Gaps = 8/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + A+ + G+ KPTPIQ + IP+VL+ D+ G AQTGTGKTA+F LP+L Sbjct: 28 MPFSGLGLSEPINKALSELGFEKPTPIQEQAIPIVLEGRDLIGSAQTGTGKTAAFGLPIL 87 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + G+ + LILEPTRELAAQV + + KN + + L+ GG+ + Q K +E Sbjct: 88 QRIVPGKPF----QCLILEPTRELAAQVEEALTVFAKNLGIKIGLIYGGVKYGGQLKMME 143 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVPFTRQ 179 GA++++ TPGR+LDH +G L + ++ LV+DE DRMLDMGF+P ++ I + RQ Sbjct: 144 GGAEIIVATPGRLLDHLGQGNLSLKQMDYLVLDEVDRMLDMGFLPDVKRIVQNYCSAERQ 203 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLF+ATM ++ ++ L+NP +E+ S AET+ H F + K L Sbjct: 204 TLLFTATMPAAIKTLTGWVLKNPAVVEIGKNRSAAETVSHAFYPVVERQKYKLLLELLER 263 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ +IF K N + LE+ V A+H + Q R L FK+G +++ Sbjct: 264 THYESV---LIFTRTKFNADMITRRLERLDHKVAALHSDRSQSERTAALKGFKDGRYEVL 320 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV N+DVP AE+Y+HRIGRTGRA + G AFTL+ ++++K+ A Sbjct: 321 VATDIAARGLDIAGVTHVINYDVPLHAEDYVHRIGRTGRASKEGDAFTLLTEDEVKNAAA 380 Query: 360 IEKLIEKKVD 369 IE I KKV+ Sbjct: 381 IEHFIGKKVE 390 >gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2] gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2] Length = 502 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 158/384 (41%), Positives = 238/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS +++ +V AG+ + TPIQ TIPL LQ DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALQGRDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ +++ L++ PTRELA Q + + GK+ + V + GG Q ++L+ Sbjct: 61 EKIDPANHQLQ---GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + +E LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++NP+ +++ TA+ I+ +V + + +K ++ +LL Sbjct: 178 LLFSATMPPAIKSIGVKFMKNPEHVQIKAKEMTADLIDQYYVRS--KDYEKFDIMTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGISVTFVTPNEMSYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ +S + PP EK Sbjct: 355 ENLTKKR-------MSPMRPPTEK 371 >gi|332969729|gb|EGK08743.1| ATP-dependent RNA helicase RhlE [Kingella kingae ATCC 23330] Length = 484 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 157/395 (39%), Positives = 246/395 (62%), Gaps = 10/395 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ + GY PTPIQ+ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 32 FSQLGLGQEIVSALSEQGYETPTPIQLAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 91 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 92 LKRYANASTSPAMHPMRMLVLTPTRELADQIDQNTKSYIKNLPLRHTVLFGGVSMDKQTA 151 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGF+ I+ I L+P + Sbjct: 152 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFVDEIRQIMRLLPKS 211 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT +++K++++F+ P+ IEV ++T +E +A A K+ LL++ Sbjct: 212 RQTLLFSATFAPDIRKLAQDFMHLPETIEVAAQNTTNANVEQHVIAVDAHRKKE--LLER 269 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + M I+FC K++ + L ++G S AIHG+ Q++R+++LS FK G ++ Sbjct: 270 LIVDLN-MPQVIVFCKTKQSAEQVARDLLRRGLSANAIHGDKSQQTRLEVLSQFKSGELR 328 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P +AE+Y+HRIGRTGRAG G A +++ + + K Sbjct: 329 VLVATDVAARGLDIAELPFVINYELPVQAEDYVHRIGRTGRAGAEGVAISMMDETEQKMY 388 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 +I++LI ++ + P E++ A H Sbjct: 389 ASIQELIGAQLPV--SRIEGFEPRWEQVQAALHEQ 421 >gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium extorquens PA1] gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1] gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens PA1] gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1] Length = 510 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 155/393 (39%), Positives = 240/393 (61%), Gaps = 8/393 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D GL+ V+ A+ +AGYV PTPIQ + +P ++ D+CGIAQTGTGKTA+F LP+L Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ RA R R L+L PTRELA+Q+AD+F YG++ T ++ GG+ Q + + Sbjct: 64 LSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR++D +R L + +EILV+DEAD+MLD+GFI ++ I ++P RQ+ Sbjct: 124 PGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQS 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM + +++ +L NP ++ V ++TAE ++ + + K ALL +L+ Sbjct: 184 LFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVI--FCHTGAKQALLNHVLR 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++F K + L+K AIHGN Q R + L+ F++G+ +++V Sbjct: 242 D-PKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+D+PN E+Y+HRIGRT RAG G+A + E+ ++ I Sbjct: 301 ATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393 E+ +K+ + G PP + AQ N A Sbjct: 361 ERTTRQKIP-VGGFPEGFVPPTRQ--EAQDNAA 390 >gi|238897524|ref|YP_002923203.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465281|gb|ACQ67055.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 414 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 160/371 (43%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + Y PTPIQ + IPL+L + D+ AQTGTGKTA+F LP+L Sbjct: 1 MSFHSLGLNADILRAVSEHNYSAPTPIQRQAIPLILAKRDLMASAQTGTGKTAAFTLPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + A V R R LIL PTRELAAQ+A N Y + L + GG+ Q Sbjct: 61 QLLSQNTALVKGRRQIRALILTPTRELAAQIAQNVSDYSQYLQLRSLAVFGGVSINPQTM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+LI TPGR+LD ++ L ++ IEILV+DEADRMLDMGFI I+ I + +P Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNALALSQIEILVLDEADRMLDMGFIHDIRRILAKLPKK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ+LLFSAT ++E++ +S L +P +EV ++TA+ I + ++K ALL Sbjct: 181 RQSLLFSATFSNEIKSLSTKLLTHPAFVEVAPCNTTAQQISQYV--HFVDKNRKRALLSH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ + + ++F K +L L K G + AIHGN Q +R + L++FKEG I Sbjct: 239 MI-GRGNWQQVLVFNRTKHGANHLSEQLNKDGITAAAIHGNKSQGARTRALADFKEGKIT 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + +V N+D+P+ E+Y+HRIGRTGRA G+A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIDQLPYVVNYDLPHIPEDYVHRIGRTGRAQHAGEAISLVCVDEDKLL 357 Query: 358 DAIEKLIEKKV 368 IE+L+++++ Sbjct: 358 KDIERLLKREI 368 >gi|307545782|ref|YP_003898261.1| ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581] gi|307217806|emb|CBV43076.1| K05592 ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581] Length = 555 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 225/368 (61%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L P V+ AV GY P+PIQ +TIP +L+ D+ G AQTGTGKTA+F LP+L+ Sbjct: 11 FGDLALLPAVLSAVETLGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKTAAFALPILSR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE R R P+ L+L PTRELA QVA +F KYG+N L VA+L GG+ + Q + L R Sbjct: 71 LELDR---REPQVLVLAPTRELAQQVAASFSKYGQNLKGLEVAILCGGMEYRDQMQALRR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH +RG L + + LV+DEAD ML MGFI ++ + + P Q + Sbjct: 128 GAQVVVGTPGRIIDHLDRGSLKLGGLSALVLDEADEMLRMGFIDDVKRVVADTPVDAQRV 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSAT+ E++++ +L P ++ + + +S+ + IE V K L ++L+ Sbjct: 188 FFSATLPTEIERIVNQYLVEPVKVTIESRASSGDNIEQRRVRIDG--GAKLEALARILEV 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F + L L +G +V ++ G++DQ R + ++ K G I +++A Sbjct: 246 E-PVDAAIVFVRTRAACTTLMEQLSARGLNVASLSGDLDQSLRERTITRLKRGKIDVLIA 304 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HV N+D+P AE Y HRIGRTGRAGR G A T + + + +E Sbjct: 305 TDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRAGVAITFAGNREGRKVGWLE 364 Query: 362 KLIEKKVD 369 + +K+D Sbjct: 365 RATGRKMD 372 >gi|70731602|ref|YP_261343.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5] gi|68345901|gb|AAY93507.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas fluorescens Pf-5] Length = 557 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 150/367 (40%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ + + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44] gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44] Length = 527 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNG 373 ++K+D +N Sbjct: 358 TTKRKMDRMNA 368 >gi|296135178|ref|YP_003642420.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] gi|295795300|gb|ADG30090.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] Length = 488 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 169/407 (41%), Positives = 237/407 (58%), Gaps = 9/407 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L +++ AV D GY K TPIQ K IPL+L D+ G AQTGTGKTA+F LP+L Sbjct: 17 FSDLALDARILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQ 76 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + P R L+L PTRELA QV N + Y K+ L A + GG+ Q Sbjct: 77 LLPLASTSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKA 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L G D+L+ TPGR+LDH + + ++ +V+DEADRMLD+GF+P +Q I +P Sbjct: 137 ELRTGVDLLVATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQ 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E++++++++LQNP +EV P++TA +E + K A L Q Sbjct: 197 RTTLLFSATFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVY--QVEEDDKRATLVQ 254 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + + I+F N + L LE+ G A+HG+ Q R+ L FK G IQ Sbjct: 255 LLR-DNPLPQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQ 313 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V N+DVP AE+Y+HRIGRTGRAG G A TL D + + Sbjct: 314 ALVATDVAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSL 373 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKS 403 IEKLI+++ + L P D +H AR +P + Sbjct: 374 ADIEKLIKRQFEKQTVSLERAPRPRRDADETREHRIARAPRALPSDT 420 >gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1] gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1] Length = 540 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 154/382 (40%), Positives = 237/382 (62%), Gaps = 8/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ LSPKV A+ D G+ +P+PIQ K IP+++Q D+ G AQTGTGKTA+F +PM Sbjct: 20 FGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAET 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RV+ L+L PTRELA QVA K G+ +L + GG + Q + L G Sbjct: 80 LNPRDGRVQ---ALVLCPTRELAIQVAQEISKIGRQNDLKALPVYGGQSIDRQIRALRYG 136 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGRILDH +R L +NN+ ++V+DEAD MLDMGF+ I+ I P RQTLL Sbjct: 137 VQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTLL 196 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +Q+++ +++ P+ + ++ T IE + + S+K L ++L + Sbjct: 197 FSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYE--CKESQKVDALCRILDME 254 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + + IIFC K+ V L +LE +G+ +HG++ Q R +++ F++G +L++A+ Sbjct: 255 E-IGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIAT 313 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ +V HV N+D+P E+Y+HRIGRTGRAGR G A TL+ + + + IE+ Sbjct: 314 DVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIER 373 Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384 + + ++ DL S+ +E+ Sbjct: 374 VTKARIQ--RRDLPSMADIVER 393 >gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311] gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311] Length = 528 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS + AV+ AG+ +P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +K + L++ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 ---DKIHTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +NNIE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ F+ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++I+ +FK G I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|167628011|ref|YP_001678511.1| ATP-dependent RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598012|gb|ABZ88010.1| ATP-dependent RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 445 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 155/365 (42%), Positives = 234/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+P + A+ GY KPTPIQ K IPLVL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MQFSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ L +++ V+DEADRMLDMGFI ++ I L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E+ ++ FL +P+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSPEITSLANEFLDSPQSVSADVVNTTVKKITQK-IYTLDKSTKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + QD + ++F K + L G + AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQD-LHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSN 357 Query: 360 IEKLI 364 IE LI Sbjct: 358 IEHLI 362 >gi|326385724|ref|ZP_08207353.1| DEAD/DEAH box helicase-like protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209703|gb|EGD60491.1| DEAD/DEAH box helicase-like protein [Novosphingobium nitrogenifigens DSM 19370] Length = 487 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 170/440 (38%), Positives = 247/440 (56%), Gaps = 23/440 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL+ ++ A+ GY PTPIQ ++IP +L+ D+ GIAQTGTGKTA+F LP L Sbjct: 4 FTELGLAEPILRALATKGYNDPTPIQRQSIPALLEGRDLLGIAQTGTGKTAAFALPSLHR 63 Query: 63 LE-----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K A RM L+L PTRELAAQ+A+N Y +N NL V + GG+P Q K Sbjct: 64 LAADPKPKKPASCRM---LVLSPTRELAAQIAENMRGYARNLNLQVDCVFGGVPIGKQAK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L G D+L+ TPGR+LD + L + +EI V+DEAD+M+D+GFI ++ + +L+P Sbjct: 121 RLVPGTDILVATPGRLLDLIDSRALTLGRVEIFVLDEADQMMDLGFIHSLKRVAALLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ+L FSATM ++ + F+ NP R+EV S+TAE +E +V Q K+ L + Sbjct: 181 RQSLFFSATMPKSIEDLGRQFIHNPVRVEVAPQSTTAERVEQ-YVTFLNQMEKQALLTLR 239 Query: 238 L--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + + + ++ GI+F K + L G AIHGN Q R L F++G+ Sbjct: 240 IRAMLADKSLDRGIVFTRTKHGADRVARHLGVAGIEARAIHGNKTQAQRTAALEAFRQGS 299 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++VA+D+AARG+D+ V HVFNF++PN E Y+HRIGRT RAG G A + A ++ Sbjct: 300 CPILVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGVAISFCAPDEKP 359 Query: 356 HIDAIEKLIEKKV-------DWLNGDLSSLNPPL----EKIDIAQHNHARKNNPIPQKST 404 ++ IE+L K D+L PP E A+H+ R+N P Sbjct: 360 YLRDIERLTGVKPTPMPLPDDFLAEAARLPTPPRRPAQENEGGARHD-GRRNGPGRGDRP 418 Query: 405 GFDRRKKNYSSQKSHIPLKE 424 DR + + S P ++ Sbjct: 419 QGDRARSDRSQGDRQRPRRD 438 >gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)] Length = 519 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 235/365 (64%), Gaps = 6/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+P+++ A+ +GY PTPIQ ++IP L D+ AQTG+GKTA+FVLPML Sbjct: 42 FVDLDLAPELLSALTSSGYEHPTPIQAQSIPPALAGRDLLLSAQTGSGKTAAFVLPMLDK 101 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 + + +A ++ T+IL PTRELA QV+D+ +Y K N+ L+GG P+ Q + L + Sbjct: 102 IIRDKATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALNK 161 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR +DH N G++ ++ ++IL++DEADRMLDMGF I+ + S P +RQT+ Sbjct: 162 GVQIIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFADDIEKVMSAAPKSRQTI 221 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 + SAT + K++ +F NP+RI++ + T E + A ++ K +L LL Sbjct: 222 MCSATWDGPVGKIAASFTNNPERIDIK--AETKHIDESVYYAD--DFNHKNRILDHLLTQ 277 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D + IIF K++ L SL++QG +HG++ Q R +I+++ K G I ++VA Sbjct: 278 KD-VNQAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRTRIINDVKAGKISILVA 336 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ + HVFN+D+P + E+Y+HRIGR+GRAGR G A + + +D +DAI Sbjct: 337 TDVAARGIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINICSIDDRPQLDAIN 396 Query: 362 KLIEK 366 + +++ Sbjct: 397 RYLKR 401 >gi|167032455|ref|YP_001667686.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida GB-1] gi|166858943|gb|ABY97350.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1] Length = 560 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L+P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K + V + GG P Q + + Sbjct: 68 IDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + +++ ++ LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ PK +++ T + T IE + +A +K + +LL+ Sbjct: 185 LFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHA--DQKIPAVLRLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ I F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 EE-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|149189303|ref|ZP_01867589.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1] gi|148836862|gb|EDL53813.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1] Length = 431 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 157/370 (42%), Positives = 232/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G S ++V A+ + GY K TP+Q + IP + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFLSQGFSSEIVQALTECGYEKLTPVQQQAIPHARRGHDILAHAQTGTGKTAAFSLPII 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 I++ +AR R R LIL PTREL Q+A+N E Y + +++VA + GG +Q +K Sbjct: 61 QQIVDTPKARTRGAVRALILAPTRELVDQIANNIESYTQYVDVSVAAVFGGAKMSSQERK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+++H G + + N+E LV DEADRMLDMGFI I+ I S V Sbjct: 121 LEAGVDILVATPGRLIEHLELGNVKLANLEFLVFDEADRMLDMGFISAIRTIMSSVNSQP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT + ++ ++++ L+ PKRI VN +STA+T+ H V +K LL +L Sbjct: 181 QTMLFSATSSPQMNALAQDLLRKPKRIIVNAENSTADTVAH--VVYPVDEDRKLELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ + L+ G HG+ Q SR + L FK G ++ Sbjct: 239 I-GRKNWQQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSSRRRALEEFKTGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+++AARGLDI + HV N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 298 MVATEVAARGLDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAVSFVSREEELTLV 357 Query: 359 AIEKLIEKKV 368 IE LI+ ++ Sbjct: 358 QIENLIQHRI 367 >gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4] gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium chloromethanicum CM4] Length = 510 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 231/368 (62%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D GL+ V+ A+ +AGYV PTPIQ + +P ++ D+CGIAQTGTGKTA+F LP+L Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ RA R R L+L PTRELA+Q+AD+F YG++ T ++ GG+ Q + + Sbjct: 64 LSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR++D +R L + +EILV+DEAD+MLD+GFI ++ I ++P RQ+ Sbjct: 124 PGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQS 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM + +++ +L NP ++ V ++TAE ++ + + K ALL +L+ Sbjct: 184 LFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVI--FCHTGAKQALLNHVLR 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++F K + L+K AIHGN Q R + L+ F++G+ +++V Sbjct: 242 D-PKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+D+PN E+Y+HRIGRT RAG G+A + E+ ++ I Sbjct: 301 ATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360 Query: 361 EKLIEKKV 368 E+ +K+ Sbjct: 361 ERTTRQKI 368 >gi|157962845|ref|YP_001502879.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847845|gb|ABV88344.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 414 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 162/408 (39%), Positives = 243/408 (59%), Gaps = 17/408 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L L K+ + GY +PT IQ + IP++L D+ AQTGTGKTA+F LP+L Sbjct: 3 VSFSSLPLGDKLQRVLAQKGYQQPTAIQAEAIPVILSGQDIMASAQTGTGKTAAFTLPLL 62 Query: 61 TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L A R+P LIL PTRELA QV N +Y N ++ ++ GG+ +AQ Sbjct: 63 QRLLDRSAEDCLTSRLPTALILVPTRELAVQVNGNVSQYAVNTDIASVVIYGGVSIDAQA 122 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL G D+++ TPGR+LDH RG L +++I+ LV DEADRMLDMGF+ I I + +P Sbjct: 123 TKLAAGCDIIVATPGRLLDHLRRGSLNLSSIDYLVFDEADRMLDMGFMDEISAILTRLPA 182 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT LFSAT + + +S+ L P RIEV+ +S A+++E A +K L+ Sbjct: 183 KRQTSLFSATFSTAIYDLSKKLLHKPARIEVDKANSAADSVEQIVYAV--DSDRKTELIC 240 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ D +IF +K+ + + G A HG++ Q +R ++L++FK+G I Sbjct: 241 HLIKKYD-WHQVLIFSRKKQTADTIAQKMLATGIETKAFHGDLGQGAREQVLNDFKQGKI 299 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VA+D+AARGLDI ++ +V N+++P AE+YIHRIGRTGRAG GKA TL +++D Sbjct: 300 KALVATDVAARGLDIVELKYVVNYEIPFIAEDYIHRIGRTGRAGSVGKAVTLYSEDDALL 359 Query: 357 IDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 ++ +E +++K++ WL G P L K +RKN+ Q+ Sbjct: 360 LEEVETVLDKRLAPQWLPG----FEPDLTK----SEPVSRKNSKTAQR 399 >gi|326693280|ref|ZP_08230285.1| ATP-dependent RNA helicase/autoaggregation-mediating protein [Leuconostoc argentinum KCTC 3773] Length = 518 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ GYV+ TPIQ KTIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ LI+ PTRELA Q AD +K G + ++ V ++ GG Q + L+ Sbjct: 61 ENIDLDNKNIQ---ALIVSPTRELAIQTADELKKLGHDKHVDVQVVFGGADIRRQIQNLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+LDH NR + ++ ++ LV+DEAD ML+MGF+ I+ I P RQT Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIDQVKTLVLDEADEMLNMGFLDDIEAIIKNTPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+ NP+ I++ T + ++ FV A+ ++K + ++L Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RARDNEKFDTMTRILD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q I+F K+ V L LE +G+ +HG++ Q+ R ++LS FK I ++V Sbjct: 236 VQ-APTLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLSQFKSHEINILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HV+NFD+P E+Y+HRIGRTGRAG G + T VA ++ ++ AI Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMDYLRAI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 EDLTKKRMTPL 365 >gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi DSM 6068] gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068] Length = 598 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 159/376 (42%), Positives = 225/376 (59%), Gaps = 7/376 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL+ +V A+ A Y +PT IQ++ IP + D+ G AQTGTGKTA+F LP+L Sbjct: 1 MSFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLL 60 Query: 61 TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L +G+ R R+PR L+L PTRELA Q+ D+ +YG++ + GG+ Q Sbjct: 61 DRLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQNSLTIYGGVSQVPQV 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L G DVLI TPGR+ D +G + ++ IE+ V+DEADRMLDMGF+P I+ I + +P Sbjct: 121 KGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQ 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +QTLLFSATM E+QK++ L +P I + +TA+ I Y K LL Sbjct: 181 QKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLY--YVPTKHKPELLA 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ ++ + ++F K LEK G V AIHGN Q +R + L FK G I Sbjct: 239 SVLKREEVTR-AVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARGLD+ V HV N+D+P E Y+HRIGRTGRAG+ G A + E Sbjct: 298 QVLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGL 357 Query: 357 IDAIEKLIEKKVDWLN 372 + +++++ KK+ N Sbjct: 358 LRDVQRILGKKIPVEN 373 >gi|307941598|ref|ZP_07656953.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4] gi|307775206|gb|EFO34412.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4] Length = 436 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 157/375 (41%), Positives = 230/375 (61%), Gaps = 5/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F LGLS ++ A+ + GY PTPIQ IPL+L+ +D+ G+AQTGTGKTA+F LP+ Sbjct: 3 EFKSLGLSDTLLKAIEEIGYDTPTPIQKNAIPLILKGNDLLGLAQTGTGKTAAFGLPLAH 62 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +LE+GR + R LIL PTREL Q+A N + + L V ++GG+ Q K+L Sbjct: 63 RLLEEGRTPEPKAARALILAPTRELVNQIASNLTSFIRKTPLRVTSVVGGVSINPQIKRL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR+LD +R + +N LV+DEAD+MLD+GFI ++ I LV RQ Sbjct: 123 GRGTDILVATPGRLLDLVDRKAVHLNKASYLVLDEADQMLDLGFIHALRRIAGLVAEKRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM +++ ++ +L P+R+EV TAE + V Q +K L+ + Sbjct: 183 TLLFSATMPRQIEDLARTYLHKPERVEVAPAGKTAERVAQS-VHFMDQKAKSGFLVDMIC 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++FC K L L G S +IHGN Q R + + +EGT++++ Sbjct: 242 ERAD--DTCLVFCRTKHGAERLMKRLVAAGVSAGSIHGNKSQNQRDRAIKGLREGTLKVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP V HV+NF++P AE Y+HRIGRT RAG G A +L + E++ + Sbjct: 300 VATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGASGDAISLCSAEEVALLRQ 359 Query: 360 IEKLIEKKVDWLNGD 374 IEKL +++ +G+ Sbjct: 360 IEKLTGIEIEVASGE 374 >gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597] gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597] Length = 520 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 235/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP +RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K A + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFATMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL J1-023] Length = 516 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 158/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 4 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 64 IDQKNNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++N+E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 358 TTKKRMQPLQA 368 >gi|294339231|emb|CAZ87585.1| RNA helicase [Thiomonas sp. 3As] Length = 488 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 169/407 (41%), Positives = 237/407 (58%), Gaps = 9/407 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L +++ AV D GY K TPIQ K IPL+L D+ G AQTGTGKTA+F LP+L Sbjct: 17 FSDLALDARILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQ 76 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + P R L+L PTRELA QV N + Y K+ L A + GG+ Q Sbjct: 77 LLPLASTSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKA 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L G D+L+ TPGR+LDH + + ++ +V+DEADRMLD+GF+P +Q I +P Sbjct: 137 ELRTGVDLLVATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQ 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R TLLFSAT + E++++++++LQNP +EV P++TA +E + K A L Q Sbjct: 197 RTTLLFSATFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVY--QVEEDDKRATLVQ 254 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + + I+F N + L LE+ G A+HG+ Q R+ L FK G IQ Sbjct: 255 LLR-DNPLPQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQ 313 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI ++ V N+DVP AE+Y+HRIGRTGRAG G A TL D + + Sbjct: 314 ALVATDVAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSL 373 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID-IAQHNHARKNNPIPQKS 403 IEKLI+++ + L P D +H AR +P + Sbjct: 374 ADIEKLIKRQFEKQTVSLERAPRPRRDADETREHRIARAPRALPSDT 420 >gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1] gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase domain-containing protein [Xylella fastidiosa M23] gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1] gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23] gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 446 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 232/372 (62%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LGL P ++ A+ + GY PTPIQ + IPL L HD+ AQTGTGKTA+F LP+L Sbjct: 1 MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60 Query: 61 TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + V PR L+L PTRELA QV D+ Y K ++ A++ GG+ Q Sbjct: 61 QRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-T 177 L RG D+LI PGR++DH R + ++ + ILV+DEADRMLDMGF+P I+ I +P Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + +++++ F+ P+ + V + ++ AETI H S+K LL Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPV--DVSRKRELLLY 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL +QD+ + ++F K L LEK G AIHGN Q R++ L++FK G + Sbjct: 239 LL-AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LV +ED K + Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357 Query: 358 DAIEKLIEKKVD 369 I +L+++ +D Sbjct: 358 RQIVRLLDRDMD 369 >gi|110637416|ref|YP_677623.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406] gi|110280097|gb|ABG58283.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406] Length = 463 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 242/369 (65%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F +L L+ +++ A+ +AGY +PT IQ K IP +L HD+ G+AQTGTGKTA++ LP+L Sbjct: 5 LNFEELKLNRQLLNAIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALPIL 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ A+ PR +I PTREL Q+ ++ K +L + L GGI + Q + L+ Sbjct: 65 MKIK--YAQGHNPRAVIFGPTRELVMQIEIAMKQLAKYTDLRIVALYGGIGPKLQKEHLQ 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ TPGR LD + ++++ ++ +V+DEAD+M+DMGF+P ++ + ++P RQ Sbjct: 123 KGVDIIVATPGRFLDLYLEEEIVLKEVKTMVLDEADKMMDMGFMPQLRKMLEVIPRKRQN 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM++ +++++E FL+ P +IEV TP +T T+ + + K LL+ L++ Sbjct: 183 LLFSATMSERVERLTEEFLEYPMKIEV-TPQATPATLISQKLYKVPNFKTKIHLLEYLIR 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ IIF KK+ ++ + ++ + C IH N DQ SR+ + +FK+GTI+++ Sbjct: 242 KDESVTRAIIFVRTKKSADDIYKFIIRKTTNTCRIIHANKDQNSRINAMDDFKDGTIKIL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V HV NFDVP ++YIHRIGRTGRA G A T + ++ HI+ Sbjct: 302 VATDVAARGIDVHEVSHVINFDVPIIYDDYIHRIGRTGRANHTGVAITFATEAEMYHIEK 361 Query: 360 IEKLIEKKV 368 IEK+I ++ Sbjct: 362 IEKIIRMQI 370 >gi|26988598|ref|NP_744023.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440] gi|148549053|ref|YP_001269155.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida F1] gi|24983373|gb|AAN67487.1|AE016375_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida KT2440] gi|148513111|gb|ABQ79971.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1] gi|313499970|gb|ADR61336.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1] Length = 559 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L+P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K + V + GG P Q + + Sbjct: 68 IDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + +++ ++ LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ PK +++ T + T IE + +A +K + +LL+ Sbjct: 185 LFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHA--DQKIPAVLRLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ I F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 EE-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. Y412MC10] gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10] Length = 506 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 230/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L +SP ++ A+ Y PTPIQ + IP VL D+ G AQTGTGKTA+F +PM+ Sbjct: 1 MTFENLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMI 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + M R L+L PTRELA Q++DN + Y + L ++GG+ + Q + Sbjct: 61 QLLNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQER 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++GAD+LI TPGR+LD N+ + + ++EILV+DEADRMLDMGFI ++ I + +P Sbjct: 121 ALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTL FSATM E+ ++ + L NP ++E+ SSTAE IE + K L + Sbjct: 181 KQTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVY--LLETGNKQQQLNE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ ++ + ++F K+ + L K + AIHG+ Q SR L+NFK G + Sbjct: 239 LMKD-PSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ HV NF++PN E Y+HRIGRTGRAG G A + +++ + Sbjct: 298 VLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFL 357 Query: 358 DAIEKLIEKKV 368 IEKLI K + Sbjct: 358 RDIEKLIGKSI 368 >gi|146282848|ref|YP_001173001.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501] gi|145571053|gb|ABP80159.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri A1501] Length = 553 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ V+ A+ GY +P+PIQ + IP++L HD+ G AQTGTGKTA+F LP+L+ Sbjct: 8 FAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K ++V + GG P Q K + + Sbjct: 68 IDPAK---REPQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKAIRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +R L++ I LV+DEAD ML +GF+ ++ I +P +RQ++ Sbjct: 125 GAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ P+ I++ + T IE + +A + L +LL+ Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVL--RLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTNQKV 368 >gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1] gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1] Length = 471 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 230/370 (62%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + GLSP+++ AV G+ + TPIQ TIPL LQ DV G AQTGTGKTA+F +P++ Sbjct: 7 FNEFGLSPELMKAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFGIPLIEK 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ V+ +++ PTRELA QV++ K G + V + GG E Q + L++ Sbjct: 67 IDMNNDAVQ---AIVVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIERQIRALKKH 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH R L + ++ +V+DEAD ML+MGF+ I+ I S VP RQTLL Sbjct: 124 PHIIVGTPGRILDHIQRRTLRLQHVHTVVLDEADEMLNMGFVEDIEAILSHVPTERQTLL 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + +++++E F+ NP+ + V T IE ++ Q KK L +LL Q Sbjct: 184 FSATMPEPIRRIAERFMNNPELVRVKAKEMTVPNIEQYYIEI--QEKKKFDTLTRLLDIQ 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q R+ +L FKEG+I ++VA+ Sbjct: 242 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIDILVAT 300 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V +I + IEK Sbjct: 301 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQLHHIEK 360 Query: 363 LIEKKVDWLN 372 ++K++ + Sbjct: 361 TTKRKMERMK 370 >gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4] gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4] Length = 510 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 231/368 (62%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D GL+ V+ A+ +AGYV PTPIQ + +P ++ D+CGIAQTGTGKTA+F LP+L Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ RA R R L+L PTRELA+Q+AD+F YG++ T ++ GG+ Q + + Sbjct: 64 LSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR++D +R L + +EILV+DEAD+MLD+GFI ++ I ++P RQ+ Sbjct: 124 PGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQS 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM + +++ +L NP ++ V ++TAE ++ + + K ALL +L+ Sbjct: 184 LFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVI--FCHTGAKQALLNHVLR 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++F K + L+K AIHGN Q R + L+ F++G+ +++V Sbjct: 242 D-PKIERVLVFTRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+D+PN E+Y+HRIGRT RAG G+A + E+ ++ I Sbjct: 301 ATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360 Query: 361 EKLIEKKV 368 E+ +K+ Sbjct: 361 ERTTRQKI 368 >gi|90414211|ref|ZP_01222192.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK] gi|90324761|gb|EAS41299.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK] Length = 431 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 167/416 (40%), Positives = 253/416 (60%), Gaps = 11/416 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA SP++V A+ + GY K TPIQ + IP + D+ AQTGTGKTA+F LP++ Sbjct: 1 MSFASQNFSPEIVRALTECGYEKLTPIQQQAIPHARRGSDILANAQTGTGKTAAFSLPII 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL+K ++R R R LIL PTRELAAQ+A N +Y K +L A + GG +Q + Sbjct: 61 QQILDKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERT 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE+G D+L+ TPGR+++H + + + NIE LV DEADRMLDMGFI ++ + V Sbjct: 121 LEKGVDILVATPGRLIEHVDLKNVSLTNIEFLVFDEADRMLDMGFITDMRKVMGEVNSNP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + ++ ++ + L+ PKRI V+ ++TA+T+ H V +K LL +L Sbjct: 181 QIMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVAH--VVYPVDQERKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ K ++F N K+ L L+K G HG+ Q +R + L FKEG ++ Sbjct: 239 IGKKN-WKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+++AARGLDI + HV NFD+P AE+Y+HRIGRTGRAG G A + V+KE+ + Sbjct: 298 MVATEVAARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAISFVSKEEELTLV 357 Query: 359 AIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKSTGFDR 408 +E+LI + +V L + ++ + ++K++ + +R NNP Q+S+ R Sbjct: 358 QVEQLIGQRIHRVQLLGYEPTNRDAFVQKMNTKAAFKDRKSRTNNPSEQQSSSERR 413 >gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 518 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 233/366 (63%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD GL PKV+ A+ + G+ + TPIQ K+IP+ L D+ G AQTGTGKTA+F LP++ Sbjct: 4 FADFGLEPKVLQAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPLINK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + K R+ L++ PTRELA QVA+ K + + GG Q + L++ Sbjct: 64 IPKEEDRIV---ALVMTPTRELAIQVAEEIGKLSRFKGTRSLPIYGGQDIVRQIRALKKK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH NR + +++++ +V+DEAD MLDMGF+ IQ+I LVP RQT+L Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLDDVKTVVLDEADEMLDMGFMDDIQSILKLVPEDRQTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +QK+++ FL+NP+ + V +A I+ ++ + + +K L +LL Sbjct: 181 FSATMPANIQKLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEVHER--QKFDALTRLL-DM 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ + I+F K+ V L +L+KQG+S +HG++ Q R ++ F++G+I ++VA+ Sbjct: 238 ESPELAIVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ V HV NFD+P E+Y+HRIGRTGRAG+ G A++ V ++ H+ IE+ Sbjct: 298 DVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREMDHLRFIER 357 Query: 363 LIEKKV 368 + K+ Sbjct: 358 ITRHKI 363 >gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c] gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c] Length = 579 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 152/372 (40%), Positives = 237/372 (63%), Gaps = 11/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL L +++ A+ GY KPTPIQ + IPL+++ HD+ G AQTGTGKTA+F LPML Sbjct: 7 LTFKDLNLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPML 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ++ + ++ L+L PTRELA QVA+ F+ Y + L V + GG ++ Q ++L Sbjct: 67 ANVDANNSNTQL---LVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA V++ TPGR++DH +G L ++N++ LV+DEAD ML MGFI ++ I S P RQ Sbjct: 124 RRGAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237 T LFSATM D ++K+++ +L +PK++++ + +TA TI+ +C VA + K L + Sbjct: 184 TALFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGH----HKLEALTR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ ++ IIF K + L L +G++V ++G+I Q SR + + K G I Sbjct: 240 IMEVEE-FDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKID 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARGLD+ V HV N+DVP E+Y+HRIGRTGRAGR G A ++ + + + Sbjct: 299 ILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRML 358 Query: 358 DAIEKLIEKKVD 369 +IE+ + +D Sbjct: 359 FSIERATRQSID 370 >gi|212712156|ref|ZP_03320284.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM 30120] gi|212685203|gb|EEB44731.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM 30120] Length = 477 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 168/409 (41%), Positives = 247/409 (60%), Gaps = 17/409 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+DL L+ +++ A+ + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 32 FSDLALNEEILRAINELGYESPTPIQQQAIPAVLAGKDLLASAQTGTGKTAGFTLPILQK 91 Query: 62 ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ R R P R LIL PTRELAAQVA+N ++Y ++ + ++ GG+ Q KL Sbjct: 92 LVDNPRGNNRRPIRALILTPTRELAAQVAENVKEYSRHLKIRSFVVFGGVSINPQMMKLR 151 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+LD ++ + ++ +E+ V+DEADRMLDMGFI I+ + + +P RQ Sbjct: 152 GGVDVLIATPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVITKLPKKRQN 211 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +DE+++++ L NP IEV +S +E + ++K LL ++ Sbjct: 212 LLFSATFSDEIKQLASKLLNNPVSIEVAPRNSASEQVTQYV--HLVDKNRKAELLSFMI- 268 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F K L L K G AIHGN Q +R + L++FK G I+++V Sbjct: 269 GRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVLV 328 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + +V NF++PN AE+Y+HRIGRTGRA G A +LV ++ K + I Sbjct: 329 ATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLKDI 388 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409 EKL++K + PL I+ + N + K PI + S DRR Sbjct: 389 EKLLKKSI------------PLMAIEGYEPNPSIKAEPIQKPSQRNDRR 425 >gi|71898621|ref|ZP_00680791.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] Length = 446 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 162/372 (43%), Positives = 232/372 (62%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LGL P ++ A+ + GY PTPIQ + IPL L HD+ AQTGTGKTA+F LP+L Sbjct: 1 MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60 Query: 61 TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + V PR L+L PTRELA QV D+ Y K ++ A++ GG+ Q Sbjct: 61 QRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-T 177 L RG D+LI PGR++DH R + ++ + ILV+DEADRMLDMGF+P I+ I +P Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + +++++ F+ P+ + V + ++ AETI H S+K LL Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPV--DVSRKRELLLY 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL +QD+ + ++F K L LEK G AIHGN Q R++ L++FK G + Sbjct: 239 LL-AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LV +ED K + Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357 Query: 358 DAIEKLIEKKVD 369 I +L+++ +D Sbjct: 358 RQIVRLLDRDMD 369 >gi|163741384|ref|ZP_02148775.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis 2.10] gi|161385118|gb|EDQ09496.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis 2.10] Length = 458 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 234/376 (62%), Gaps = 9/376 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ +GL +++ + + GY PTPIQ + IP L DV G+AQTGTGKTA+F +P++ Sbjct: 19 EFSTMGLPEQLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIA 78 Query: 62 -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ GR + R L+L PTRELA Q+A N + + + L++GG+ Q +L Sbjct: 79 QMMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRL 138 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+LI TPGR+LD +RG L + + + LV+DEAD+MLD+GFI ++ I +L+P RQ Sbjct: 139 SRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQ 198 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM ++ +++ ++LQ+P RIEVN P A+ I + K L L Sbjct: 199 TMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSV-----HFIAKAEKLSLLK 253 Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + K+ ++F K + L +L GFS AIHGN Q R + L++FK G ++ Sbjct: 254 ELLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVK 313 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIPDV +V+N+++PN + Y+HRIGRT RAG+ G+A A +++ + Sbjct: 314 ILVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGEL 373 Query: 358 DAIEKLIEKKVDWLNG 373 AI+K + + +G Sbjct: 374 KAIQKTMNLNIPVASG 389 >gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 585 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 150/363 (41%), Positives = 229/363 (63%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL V+ A+ D GY P+ IQ TIP++LQ DV G+AQTGTGKTA+F LP+L Sbjct: 19 LTFADLGLDANVLKALKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALPVL 78 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + +E G + P+ L+L PTRELA QV + FEKY + ++V + GG + Q L Sbjct: 79 SQMETGH---KNPQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQQLSAL 135 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DV++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF ++ I + P T+Q Sbjct: 136 RRGVDVIVGTPGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADTPSTKQ 195 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++S +L +P+ I V T ++T+ I ++ Y +K L ++L Sbjct: 196 VALFSATMPAQIRRISAQYLNDPEEITVKTKTTTSANITQRYL--IVSYQQKIDALTRIL 253 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ + I+F K + L +G++ AI+G+I Q R + ++ K G + ++ Sbjct: 254 EVEN-FEGMIVFTRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSGKLDIL 312 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A + V + + + A Sbjct: 313 VATDVAARGLDVERISHVVNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPRERRMLTA 372 Query: 360 IEK 362 IEK Sbjct: 373 IEK 375 >gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L] gi|81689748|sp|Q63GX5|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L] Length = 528 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K+D + D +L+ LE Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376 >gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL F6-596] gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL F6-596] Length = 526 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 158/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 6 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 66 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++N+E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 360 TTKKRMQPLQA 370 >gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860] gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860] Length = 536 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 157/384 (40%), Positives = 239/384 (62%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGL+P+++ AV AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 22 LKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 81 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ A R+ + L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 82 NKID---ADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 138 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + +E LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 139 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 198 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++ P+ +++ TA+ I+ +V + + +K ++ +LL Sbjct: 199 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLD 256 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 257 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 315 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 316 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 375 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ ++ L PP EK Sbjct: 376 ENLTKKR-------MTPLRPPTEK 392 >gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185] gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2] gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W] gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W] gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2] gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185] gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 525 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K+D + D +L+ LE Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376 >gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741] gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741] Length = 499 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 157/372 (42%), Positives = 234/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGL ++ AV +G+ + TPIQ +TIPLVL +DV G AQTGTGKTA+F LP+L Sbjct: 8 LKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 67 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ +R + +I+ PTRELA Q + GK V ++ GG Q K+LE Sbjct: 68 QQLD---LDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLE 124 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + +L+ TPGR+LDH RG + + +++ L++DEAD MLDMGF+ I+ I VP RQ Sbjct: 125 QHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E+ K+ E F+ NP+ +++ T + ++ FV T + +K ++ +L+ Sbjct: 185 TLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKT--KEFEKFDIMTRLI 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F K+ V L LE +G++ IHG++ Q+ RM +L FK G + ++ Sbjct: 243 DVQ-APELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG HG + T V ++ ++ Sbjct: 302 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 361 Query: 360 IEKLIEKKVDWL 371 IEKL +K++D L Sbjct: 362 IEKLTKKRMDPL 373 >gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264] gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550] gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264] gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550] gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 533 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K+D + D +L+ LE Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376 >gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1] gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1] gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1] gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1] gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 528 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 152/383 (39%), Positives = 241/383 (62%), Gaps = 13/383 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS ++ AV AGY + TPIQ +TIP+VL+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ ++ L++ PTRELA Q + + GK+ V ++ GG Q + L+ Sbjct: 61 QRLDFDNHNIQ---ALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + V++ TPGR+LDH RG + ++++++LV+DEAD ML+MGF+ I++I VP RQT Sbjct: 118 QNPQVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM E++++ F++ P +++ + TA+T++ +V A+ +K ++ +L Sbjct: 178 MLFSATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVK--AKEFEKFDIMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F K+ V L LE +G++ IHG++ Q+ R +I+ FK G + ++V Sbjct: 236 VQ-APELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV+N+D+P ++Y+HRIGRTGRAG G + T V +++++ I Sbjct: 295 ATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383 EKL +K+ + L PP E Sbjct: 355 EKLTKKR-------MLPLKPPTE 370 >gi|160898343|ref|YP_001563925.1| DEAD/DEAH box helicase domain-containing protein [Delftia acidovorans SPH-1] gi|160363927|gb|ABX35540.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1] Length = 598 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 151/373 (40%), Positives = 238/373 (63%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AVL+ GY PTPIQ + IP VL HD+ AQTGTGKTA+F LPML Sbjct: 1 MTFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML 60 Query: 61 TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L +G+ + R L+L PTRELAAQV ++ Y K ++ ++ GG+ + Q Sbjct: 61 QRLSQGQVPRNKFGGKGIRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++++G D+L+ TPGR+LD +G + ++ +E+LV+DEADRMLDMGFI ++ + +LVP Sbjct: 121 IDRIKKGVDILVATPGRLLDLQQQGFMDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +DE++ ++ L+NP+ I+V ++T + I + + KK LL Sbjct: 181 KDKQSLLFSATFSDEIRDLANGLLRNPQSIQVTPSNTTVQRITQV-IHPVGRGKKKQVLL 239 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + +++ ++F K N+ L K S A+HGN Q +R + L+ FK G Sbjct: 240 H--IINENNWSQVLVFTRTKFGANNVAEFLTKNNISAMALHGNKSQSARTQALAGFKTGE 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VA+D+AARG+DI ++ HV N+++PN +E+Y+HRIGRTGRAGR G A +LV ++ Sbjct: 298 LRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGREGHAVSLVCMDEEG 357 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++++ Sbjct: 358 FMMDIERFTKQEI 370 >gi|330503492|ref|YP_004380361.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] gi|328917778|gb|AEB58609.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] Length = 560 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL P ++ A+ GY +P+PIQ + IP++L HD+ G AQTGTGKTA+F LP+L+ Sbjct: 8 FAALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K + V + GG P Q K + + Sbjct: 68 IDPAK---REPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKAIRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH R + +++ I+ LV+DEAD ML +GF+ ++ I +P +RQ++ Sbjct: 125 GAQIIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ P+ I++ + T IE + +A L +LL+ Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVL--RLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I F K+ ++L +LE +GF A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|29375434|ref|NP_814588.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583] gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis TX0104] gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis HH22] gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis TX1322] gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis ATCC 29200] gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus faecalis R712] gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus faecalis S613] gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248] gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855] gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134] gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109] gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411] gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470] gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635] gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512] gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102] gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516] gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus faecalis V583] gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis TX0104] gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis HH22] gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis ATCC 29200] gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis TX1322] gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus faecalis R712] gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus faecalis S613] gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411] gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109] gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134] gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855] gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248] gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512] gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102] gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635] gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516] gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470] gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137] gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000] gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017] gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027] gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141] gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244] gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012] gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031] gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043] gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312] gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645] gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302] gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341] gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342] gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346] gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B] gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630] gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A] gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF] Length = 536 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 157/384 (40%), Positives = 239/384 (62%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGL+P+++ AV AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 22 LKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 81 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ A R+ + L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 82 NKID---ADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLK 138 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + +E LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 139 DRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 198 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++ P+ +++ TA+ I+ +V + + +K ++ +LL Sbjct: 199 LLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRS--KDFEKFDIMTRLLD 256 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 257 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 315 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 316 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 375 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ ++ L PP EK Sbjct: 376 ENLTKKR-------MTPLRPPTEK 392 >gi|77359936|ref|YP_339511.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas haloplanktis TAC125] gi|76874847|emb|CAI86068.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas haloplanktis TAC125] Length = 616 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 238/384 (61%), Gaps = 15/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LSP ++ AV + GY P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L Sbjct: 7 FESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNN 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ FE+Y K+ + V L GG + Q L R Sbjct: 67 IDPS---VKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH NRG + + ++ LV+DEAD ML MGFI +++I P +QT Sbjct: 124 GAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTC 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++Q +S ++ NP+++ ++ +ST ++E F A K A+++ L Sbjct: 184 LFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVF--WNASIHKNKAIVRFLEAE 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + I+F + + V L LE++GFS ++G+++Q++R + + K G + +++A Sbjct: 242 Q--YEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E Y+HRIGRTGRAGR GKA V KH + Sbjct: 300 TDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFV-----KHNE--R 352 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKI 385 L++ + N D++ + P KI Sbjct: 353 YLLKNIIRHTNSDIAQVELPTAKI 376 >gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM 4136] Length = 452 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 152/370 (41%), Positives = 228/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ A+ +AGY +PTPIQ IP V+ HD+ GIAQTGTGKTA+F LPML Sbjct: 1 MPFRALGLHENILKAIQEAGYSEPTPIQAAAIPQVVAGHDMIGIAQTGTGKTAAFTLPML 60 Query: 61 TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + G+ +R + LIL PTREL AQ+ DN Y K+ L VA++ GG+ Q + Sbjct: 61 HLLAQLHGQGPLRGIKALILAPTRELVAQIHDNVRAYAKHLPLKVAMIFGGVGERPQIEA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D++I TPGR++D + N++E LV+DEADRMLDMGF+P I+ I +P R Sbjct: 121 LRAGTDLVIATPGRLIDLMGQRHGNFNSLEFLVLDEADRMLDMGFLPSIKRIVKALPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT++ E++ ++ FL +PK +++ S+ AE++ FV ++ K L+ L Sbjct: 181 QTLLFSATLSKEIEALTHEFLNHPKTVQIGKRSNPAESVTQ-FVYEVPKHLKPALLVHLL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 M ++F K + L++ G +H N Q R++ L++FK G ++ Sbjct: 240 KDPAFNMV--LVFSRMKHGADRIARHLDRYGIKTVTLHSNRTQNQRLRALADFKSGAARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ + HV N+D P AE+Y+HRIGRTGRA G A + ++ ED + Sbjct: 298 LVATDIAARGIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFISPEDHGPLK 357 Query: 359 AIEKLIEKKV 368 ++E+ I + + Sbjct: 358 SLERFIGRGI 367 >gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9] gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus LMD-9] Length = 527 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS + AV+ AG+ +P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +K R + L++ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 ---DKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +NNIE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEKRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ F+ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +G IHG++DQ R++I+ +FK G I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 517 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K+D + D +L+ LE Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376 >gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676] gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676] Length = 525 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K+D + D +L+ LE Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376 >gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15] gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-Cer4] gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST24] gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] gi|146291075|sp|Q81IT9|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST24] gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-Cer4] gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15] gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] Length = 533 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K+D + D +L+ LE Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376 >gi|307308978|ref|ZP_07588661.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti BL225C] gi|306900612|gb|EFN31225.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti BL225C] Length = 504 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 229/374 (61%), Gaps = 4/374 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGLS +V + G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+ Sbjct: 4 FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + R R R L+L PTREL Q+A N + + K L + L++GG+ Q ++L Sbjct: 64 LVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD +R + + LV+DEAD+MLD+GFI ++ I+ LVP RQT Sbjct: 124 RGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + +++ +L +P ++EV+ P A+ +E + K L Q L Sbjct: 184 LLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + +IF K L L+ GF +IHGN Q R + L F++G I+++V Sbjct: 244 NPDGLS--LIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIP V HV+N+D+P + Y+HRIGRT R GR G A A ++I+ + I Sbjct: 302 ATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 361 Query: 361 EKLIEKKVDWLNGD 374 EKL+ ++ +G+ Sbjct: 362 EKLMGIQIAVASGE 375 >gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp. SIP3-4] gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4] Length = 468 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 228/370 (61%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P ++ A+ +AGY PTPIQ + IP VL HD+ AQTGTGKTA+F LP L + Sbjct: 5 FETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPALNL 64 Query: 63 LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L ++ R PR L+L PTRELAAQV D KYGK ++GG+P+ QNK L + Sbjct: 65 LADIHPSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKLLSQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+L+ TPGR+LDH RG++ M+ +++L++DEADRMLDMGF+P I+ I +P RQTL Sbjct: 125 PLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQTL 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLL 239 +FSAT + +++ L++PK I++ IE FV + K LL+ LL Sbjct: 185 MFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFV---DDMNHKNKLLEHLL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + I+F + K++ L L G A+HG++ Q +R + L+ + G ++++ Sbjct: 242 IAPD-VNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+P AE+Y+HRIGRTGRAG G A + + D + Sbjct: 301 VATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAVSFASHADRHQLRK 360 Query: 360 IEKLIEKKVD 369 IE+ ++++ Sbjct: 361 IEQYTGQRIE 370 >gi|30260423|ref|NP_842800.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames] gi|47525504|ref|YP_016853.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] gi|49183266|ref|YP_026518.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Sterne] gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis str. A2012] gi|118475995|ref|YP_893146.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus NVH0597-99] gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42] gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201] gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 4342] gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1] gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066] gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055] gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North America USA6153] gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B] gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum] gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus anthracis CI] gi|81696998|sp|Q6HPE6|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|81715465|sp|Q81VG0|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|134039177|sp|A0R8U6|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Ames] gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. 'Ames Ancestor'] gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Sterne] gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus thuringiensis str. Al Hakam] gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus NVH0597-99] gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1] gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 4342] gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201] gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42] gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI] Length = 528 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K+D + D +L+ LE Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376 >gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella elegans ATCC 700633] gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella elegans ATCC 700633] Length = 509 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 158/383 (41%), Positives = 237/383 (61%), Gaps = 13/383 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ ++ G+ + TPIQ +TIPL L DV G AQTGTGKTASF LPML Sbjct: 1 MKFNELGLDSALLESIEKMGFEEATPIQSQTIPLALAGKDVIGQAQTGTGKTASFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +K R R + L++ PTRELA Q + + GK+ + V + GG Q ++L+ Sbjct: 61 ---QKINLRNRKVQGLVIAPTRELAIQTQEELYRLGKDKKIHVQAVYGGADIGRQIRQLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH +R L ++NIE LV+DEAD ML+MGF+ I++I LVP RQT Sbjct: 118 DQPHIVVGTPGRLLDHISRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D+++++ F++ P+ + + + TA I+ FV + +K ++ +LL Sbjct: 178 LLFSATMPDDIKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVK--CKDFEKFDIMTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +GF IHG++ Q+ RM +L +FK + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383 E L K+ +++L PP + Sbjct: 355 EDLTRKR-------MTALRPPTQ 370 >gi|160888927|ref|ZP_02069930.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492] gi|270293944|ref|ZP_06200146.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20] gi|156861394|gb|EDO54825.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492] gi|270275411|gb|EFA21271.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20] Length = 425 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 232/368 (63%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ + GY PTPIQ K+IP++LQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFENLNLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R + + LIL PTRELA Q+ ++F YGK L A++ GG+ + Q +L+ Sbjct: 61 QKLYKTDNRKSI-KALILTPTRELAIQIGESFSAYGKYTGLRHAVIFGGVGQKPQTDELK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +L+ TPGR+ D N+G + + +E V+DEADRMLDMGFI I+ I L+P RQT Sbjct: 120 RGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++ ++ + L +P+++EV SST +TI + + +K LL LL+ Sbjct: 180 LFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVY--FVEKKEKKDLLIHLLK 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +K+ +IF K L +L K G AIHGN Q +R + L+ FK +++++ Sbjct: 238 N-PAIKSVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDI 356 Query: 361 EKLIEKKV 368 +KLI K + Sbjct: 357 QKLIGKSI 364 >gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicaulis alexandrii HTCC2633] gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicaulis alexandrii HTCC2633] Length = 466 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 160/389 (41%), Positives = 233/389 (59%), Gaps = 10/389 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D GL+P ++ A+ + GY PTPIQ + IP V++ HD+ G+AQTGTGKTA+FVLP++ Sbjct: 21 FTDFGLNPSILTAISEQGYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLPLVHQ 80 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + E +A R R LIL PTRELAAQ+ + + Y + LT ++ GG+ Q K L Sbjct: 81 LLAENKQAPGRSCRALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFGGVKAGPQIKALA 140 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LDH K ++ +++DEAD+MLD+GFIP I+ + +V RQT Sbjct: 141 RGVDILVATPGRLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLLRMVGEERQT 200 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM +++++++FL +P+ + V PS E I+ T A +K AL+ L Sbjct: 201 LMFSATMAPAIRQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEAS-AKPDALID--LM 257 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + K IIF K + L K G AIHG+ Q R + L FK G ++V Sbjct: 258 APEAGKRAIIFTRTKYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKSGEAPVLV 317 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V V N+++PN AENY+HRIGRT RAG G+A L A ++ + I Sbjct: 318 ATDIAARGIDVDGVDLVVNYELPNVAENYVHRIGRTARAGASGRAVALCAPDERVMLKDI 377 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389 EK + + LN PP+ K + A+ Sbjct: 378 EKTMGVTIQGLND-----APPMPKGEAAK 401 >gi|42779348|ref|NP_976595.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987] gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|217957807|ref|YP_002336351.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1] gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST26] gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293] gi|81700027|sp|Q73EU1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus ATCC 10987] gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1] gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293] gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST26] gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 525 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K+D + D +L+ LE Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376 >gi|16264922|ref|NP_437714.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti 1021] gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti 1021] Length = 503 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 229/374 (61%), Gaps = 4/374 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGLS +V + G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+ Sbjct: 4 FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + R R R L+L PTREL Q+A N + + K L + L++GG+ Q ++L Sbjct: 64 LVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD +R + + LV+DEAD+MLD+GFI ++ I+ LVP RQT Sbjct: 124 RGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + +++ +L +P ++EV+ P A+ +E + K L Q L Sbjct: 184 LLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + +IF K L L+ GF +IHGN Q R + L F++G I+++V Sbjct: 244 NPDGLS--LIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIP V HV+N+D+P + Y+HRIGRT R GR G A A ++I+ + I Sbjct: 302 ATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 361 Query: 361 EKLIEKKVDWLNGD 374 EKL+ ++ +G+ Sbjct: 362 EKLMGIQIAVASGE 375 >gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu] Length = 408 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 229/372 (61%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ +V AV + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLAEPLVKAVNELGYTSPTPIQSQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L A R R LIL PTRELAAQV ++ Y K L ++ GG+ Q Sbjct: 61 QRLHTFYAEHHHAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L RG D+++ TPGR+LDH + + ++ ++ILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 DALRRGVDIVVATPGRLLDHMQQKTIDLSQLDILVLDEADRMLDMGFIHDIKRVLAKLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT +DE++ ++++ L +P IEV ++TAET+ +K LL Sbjct: 181 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPV--DRDRKRELLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + ++F K L L K G S AIHGN Q +R + L+ FK T+ Sbjct: 239 HLIREHNWFQV-LVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV NFD+PN E+Y+HRIGRTGRAG G+A +LV ++ + Sbjct: 298 QVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQL 357 Query: 357 IDAIEKLIEKKV 368 + IE+LI++++ Sbjct: 358 LRDIERLIKREI 369 >gi|77460208|ref|YP_349715.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1] gi|77384211|gb|ABA75724.1| cold-shock dead-box protein A [Pseudomonas fluorescens Pf0-1] Length = 557 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 149/367 (40%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ + + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +L+ +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102] gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102] Length = 463 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 172/435 (39%), Positives = 262/435 (60%), Gaps = 22/435 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ D GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 4 FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 64 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTA 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 124 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A A KK LL++ Sbjct: 184 RQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDA--LKKRNLLER 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ + +IHG+ Q+SR++ L+ FKEGT++ Sbjct: 242 LIVDLH-MNQVIVFCKTKQSVDQVTRDLVRRHIAAQSIHGDKSQQSRLETLNAFKEGTLR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ K + K Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360 Query: 358 DAIEKLI--EKKVDWLNG----DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 +AI++L + KV+ + G S+ N + QHN +R S DR K+ Sbjct: 361 EAIKELTGSDLKVERIEGFEPHWWSNSNQDEAETHQNQHNDSR--------SRRDDRNKR 412 Query: 412 NYSSQKSHIPLKESE 426 + + KS K++E Sbjct: 413 SEYASKSDKNSKKTE 427 >gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 518 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L+ D+ G AQTGTGKTA+F LPM+ Sbjct: 4 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 64 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++++E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 358 TTKKRMQPLQA 368 >gi|146276411|ref|YP_001166570.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554652|gb|ABP69265.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 453 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 155/375 (41%), Positives = 226/375 (60%), Gaps = 7/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGLS K++ + A + K TPIQ++ IP V+Q D+ G+AQTGTGKT +F LP+L Sbjct: 11 DFSTLGLSEKILQGLAKAQFTKATPIQVEAIPHVMQGRDLMGLAQTGTGKTLAFGLPLLH 70 Query: 62 ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L G PRT LIL PTREL +Q+A N E + K + V + GG Q ++ Sbjct: 71 RL-LGVGHPPPPRTIRALILAPTRELVSQIAANLELFTKGTPVKVVTITGGASINRQTER 129 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGAD+++ TPGR++D +R +++++ LV+DEAD+MLDMGFI ++ I +P R Sbjct: 130 LARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKR 189 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM +++++ FL+ P R++V P E I + K LL+ Sbjct: 190 QTLLFSATMPKLIEELAHTFLREPVRVQVAPPGKPVEKIAQGV--HFIPQGDKAKLLESY 247 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + ++F K L L GF +IHGN Q R + L+ F++GT+ + Sbjct: 248 LLKHPG-EQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGTLDV 306 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DIP V HV+N+D+PN ENY+HRIGRT RAG G A VA ++ Sbjct: 307 LVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMDEFR 366 Query: 359 AIEKLIEKKVDWLNG 373 A+EKL+++ + + G Sbjct: 367 AVEKLLKQPIPVIGG 381 >gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp. MP688] gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688] Length = 468 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 228/370 (61%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P ++ A+ +AGY PTPIQ + IP VL HD+ AQTGTGKTA+F LP L + Sbjct: 5 FETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPALNL 64 Query: 63 LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L ++ R PR L+L PTRELAAQV D KYGK ++GG+P+ QNK L + Sbjct: 65 LADIHPSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKLLSQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+L+ TPGR+LDH RG++ M+ +++L++DEADRMLDMGF+P I+ I +P RQTL Sbjct: 125 PLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQTL 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLL 239 +FSAT + +++ L++PK I++ IE FV + K LL+ LL Sbjct: 185 MFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFV---DDMNHKNKLLEHLL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + I+F + K++ L L G A+HG++ Q +R + L+ + G ++++ Sbjct: 242 IAPD-VNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+P AE+Y+HRIGRTGRAG G A + + D + Sbjct: 301 VATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAVSFASHADRHQLRK 360 Query: 360 IEKLIEKKVD 369 IE+ ++++ Sbjct: 361 IEQYTGQRIE 370 >gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273] gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272] gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272] gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273] Length = 530 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 160/381 (41%), Positives = 236/381 (61%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +K R + +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 62 -DKVDTRKEAVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++KVD + + +L+ LE Sbjct: 358 TTKRKVDRM--EAPTLDEALE 376 >gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 419 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 171/410 (41%), Positives = 241/410 (58%), Gaps = 18/410 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ + LS K++ + + GY PTPIQ IP++L D+ AQTGTGKTA+F LP+L Sbjct: 1 MSFSSMALSQKLITLLSELGYSSPTPIQAHAIPVILAGQDIMAGAQTGTGKTAAFALPIL 60 Query: 61 TILE---------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111 L K ++ R L+L PTRELA QV +F KYGK+ L A++ GG+ Sbjct: 61 QKLSECDVELSDTKQTVSLKPVRALVLTPTRELALQVNQSFAKYGKDSGLNTAIVYGGVS 120 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 +AQ L+ G D+L+ TPGR+LDH RG L + + LV DEADRMLDMGF I I Sbjct: 121 IDAQADALKAGVDILVATPGRLLDHLRRGSLTLKQLNFLVFDEADRMLDMGFKDEINAIL 180 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 VP RQTLLFSAT + +S+ Q+PK IEV+ ++ A +E A A +K Sbjct: 181 KQVPSKRQTLLFSATFDPSVFALSKRLQQDPKLIEVDKRNTLAAKVEQVVYAVDA--DRK 238 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L+ L++S+ + +IF +K+ N+ + K G A HG++ Q R K L F Sbjct: 239 SELICHLVKSK-LWQQVLIFSRKKQGADNIAAKMVKAGIKAQAFHGDLSQAVREKALQQF 297 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K+G IQ++VA+D+AARGLD+ ++ V N+++P AE+YIHRIGRTGRAG G A TL ++ Sbjct: 298 KQGEIQVLVATDVAARGLDVEELKVVVNYELPFIAEDYIHRIGRTGRAGNAGLAITLYSE 357 Query: 352 EDIKHIDAIEKLIEKKV--DWLNG---DLSSLNPPLEK-IDIAQHNHARK 395 ED ++ IE L++ ++ WL G DL+ P K AQ A++ Sbjct: 358 EDALLLEEIEALLDSRLPQQWLPGFEPDLTKAEPVTRKNSKAAQKQRAKR 407 >gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST196] gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis KBAB4] gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST196] Length = 538 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 160/381 (41%), Positives = 237/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTNKDAVQ---GIVIAPTRELAIQVGEELYKLGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIF K+ V L +L +G++ IHG++ Q RM +L FKEG I+++VA+ Sbjct: 239 -SPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++KVD + + +L+ LE Sbjct: 358 TTKRKVDRM--EAPTLDEALE 376 >gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47] Length = 862 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 235/371 (63%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L +V AV +GY KPTPIQ + IP +L DV +QTGTGKTA+F LP+L+ Sbjct: 237 FRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSR 296 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ R R P+ L+L PTRELA QVA +F KYG + + VA + GG +E Q K+L R Sbjct: 297 VD---VRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRR 353 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L + +++ LV+DEAD ML+MGF+ +Q + P RQ Sbjct: 354 GVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVA 413 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++K+++ +L +P RI + + + TA ++ A + K L ++L+ Sbjct: 414 LFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQR--ALFVSPRDKIDALTRILEV 471 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T I+F K + +++ L +QGFS A++G++ Q+ R + + K G + ++VA Sbjct: 472 EET-DGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 530 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFNFD+P+ +E+Y+HRIGRTGRAGR G+A + + + IE Sbjct: 531 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 590 Query: 362 KLIEKKVDWLN 372 ++ ++ ++ Sbjct: 591 NTTKQPIEIID 601 >gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94] Length = 516 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 238/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTHKESVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++K+D + D +L+ LE Sbjct: 358 TTKRKMDRM--DAPTLDEALE 376 >gi|307319802|ref|ZP_07599226.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83] gi|306894533|gb|EFN25295.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83] Length = 504 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 229/374 (61%), Gaps = 4/374 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGLS +V + G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+ Sbjct: 4 FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + R R R L+L PTREL Q+A N + + K L + L++GG+ Q ++L Sbjct: 64 LVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD +R + + LV+DEAD+MLD+GFI ++ I+ LVP RQT Sbjct: 124 RGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + +++ +L +P ++EV+ P A+ +E + K L Q L Sbjct: 184 LLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + +IF K L L+ GF +IHGN Q R + L F++G I+++V Sbjct: 244 NPDGLS--LIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIP V HV+N+D+P + Y+HRIGRT R GR G A A ++I+ + I Sbjct: 302 ATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 361 Query: 361 EKLIEKKVDWLNGD 374 EKL+ ++ +G+ Sbjct: 362 EKLMGIQIAVASGE 375 >gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp. AL212] gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212] Length = 476 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 172/441 (39%), Positives = 258/441 (58%), Gaps = 30/441 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LGLS ++ A+ + GY PTPIQ + IP++L+ DV G AQTGTGKTA F LPML Sbjct: 5 ISFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPML 64 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 LE P R LIL PTRELA QV ++ YGK L A++ G+ + Q Sbjct: 65 QKLESHANSSTSPAKHPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVNIDVQ 124 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + G ++L+ TPGR+LDH + L+++ IEIL++DEADRMLDMGF+P I+ I ++P Sbjct: 125 IAAIRSGVEILVATPGRLLDHLQQKNLILSKIEILILDEADRMLDMGFLPDIKQIIQMLP 184 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCAL 234 RQ L+FSAT ++E++K++ L++P IEV +S ++ I H Y+ SK K Sbjct: 185 DQRQNLMFSATFSEEIKKLAGKILKSPILIEVAKQNSVSDLISHI---VYSVESKNKQEF 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L +++ ++ ++ +IF K +L L + IHG+ +Q R + L NFK G Sbjct: 242 LIDMIKKKN-LQQVLIFTRTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFKCG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI ++ HV NF++PN E+Y+HRIGRTGRAG G A + V++E+ Sbjct: 301 LIRILVATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGAKGFAISFVSREET 360 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN--NPIPQKSTGFDRRKKN 412 + IE+L+ KI + + N KN P K+ + +KK+ Sbjct: 361 VLLGGIERLLGI-----------------KIQVEESNSGLKNQQTEFPNKTKIIEEQKKS 403 Query: 413 YS-SQKSHIPLKESEKISKLQ 432 + S K+ K S++I K++ Sbjct: 404 RAFSFKNESLSKRSKRIEKME 424 >gi|301166259|emb|CBW25834.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ] Length = 431 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 159/375 (42%), Positives = 229/375 (61%), Gaps = 6/375 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LS K++ + D GY PT IQ + IPL+L+ D+ GIAQTG+GKT +F +PM+ Sbjct: 4 FKDLKLSSKLLKTLADKGYSTPTDIQREAIPLILEGRDIQGIAQTGSGKTGAFSIPMIEN 63 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + + R LIL PTRELA Q+ E Y K NL+ A++ GG Q +KL Sbjct: 64 LSRSKQVVKAKRARALILTPTRELANQINGQVEIYSKGMNLSSAVIFGGDGPLNQVRKLA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+LD RG + ++ +E V+DEADRMLDMGFI I+ I +P RQT Sbjct: 124 TGVDLLIATPGRLLDFLQRGHIKLDELETFVLDEADRMLDMGFIKDIEKIIERLPKKRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ K++ L PK IEV+ PS+ E+I + + +K LL++++ Sbjct: 184 LFFSATMPKDISKLASTILTRPKIIEVSPPSTPVESIAQYLI--HIDRVQKPKLLKKII- 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++ I+F K +C L K G +IH N Q +R K L+ F+ I+ +V Sbjct: 241 NESVSESVIVFTRTKYGADRVCKHLMKAGIESSSIHSNRSQGAREKALAAFRNKKIKALV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+DVP AE+YIHRIGRT RAG+ G A+T + K + A+ Sbjct: 301 ATDIAARGIDVDGISHVINYDVPLEAESYIHRIGRTARAGKSGVAYTFCDPAETKSLKAV 360 Query: 361 EKLIEKKVDWLNGDL 375 EKL+ K+ +N D Sbjct: 361 EKLLGFKIK-VNSDF 374 >gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9] gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium profundum SS9] Length = 422 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 166/384 (43%), Positives = 238/384 (61%), Gaps = 14/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++V V + G+ PTPIQ + IP VL D+ AQTGTGKTA+F LPM+ Sbjct: 1 MSFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMI 60 Query: 61 TIL------EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111 L E ++ P R L+L PTRELA QV D+ Y KN ++ VA+ GG Sbjct: 61 QRLLASQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTS 120 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 Q K L+ G D+LI TPGR+LDH G + ++ IE LV+DEADRMLDMGF+ I+ I Sbjct: 121 MGVQVKALKSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIM 180 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 +P RQTLLFSAT +++++K++ + L +PK IEV + TAE++ +K Sbjct: 181 QRMPRKRQTLLFSATFSNQVKKLAYDILADPKLIEVTPENITAESVTQMVYPV--DKHRK 238 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L+ S++ +IF K+ L L G +I+G+ Q +R + LS+F Sbjct: 239 RELLSYLIGSRN-WNQVLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDF 297 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 KEG ++ MVA+D+AARGLDI +G+V NFD+P +AE+Y+HRIGRTGRAG G A +L++ Sbjct: 298 KEGKVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSI 357 Query: 352 EDIKHIDAIEKLIEKKV--DWLNG 373 ++ + AIE+L++ ++ +WL G Sbjct: 358 DEEWALRAIEELLDTRLPQEWLEG 381 >gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e] gi|224499403|ref|ZP_03667752.1| hypothetical protein LmonF1_06772 [Listeria monocytogenes Finland 1988] gi|224503166|ref|ZP_03671473.1| hypothetical protein LmonFR_11698 [Listeria monocytogenes FSL R2-561] gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165] gi|254832169|ref|ZP_05236824.1| hypothetical protein Lmon1_12514 [Listeria monocytogenes 10403S] gi|254898962|ref|ZP_05258886.1| hypothetical protein LmonJ_04075 [Listeria monocytogenes J0161] gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818] gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900] gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e] gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165] gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900] gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818] Length = 520 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L+ D+ G AQTGTGKTA+F LPM+ Sbjct: 4 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 64 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++++E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 358 TTKKRMQPLQA 368 >gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2] Length = 457 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 157/367 (42%), Positives = 226/367 (61%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ GY P+PIQ + IP++L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L GR A R LIL PTRELAAQV +N + + + L A++ GG+ Q K L Sbjct: 61 HRLLDGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVLI TPGR+LD + + + + +E LV+DEADRMLDMGFI I+ I L+P RQ Sbjct: 121 RSGVDVLIATPGRLLDLYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + E+ +++ NP+++ ++T ET++ V SKK A L L+ Sbjct: 181 TLLFSATFSSEITTLAQTITNNPEKVSTAPANTTVETVQQHLVPI--DKSKKTAALISLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ K ++F K + L + AIHGN Q +R K LS FK G I ++ Sbjct: 239 K-QNGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEIDVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI ++ V N D+PN +Y+HRIGRTGRAG G+A++ V+ +++ + Sbjct: 298 VATDIAARGIDINELPIVINIDLPNTPADYVHRIGRTGRAGASGQAWSFVSIDELDQLKD 357 Query: 360 IEKLIEK 366 IE LI++ Sbjct: 358 IETLIQQ 364 >gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803] gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803] Length = 528 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 237/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++KVD + + +L+ LE Sbjct: 358 TTKRKVDRM--EAPTLDEALE 376 >gi|268680158|ref|YP_003304589.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618189|gb|ACZ12554.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 436 Score = 299 bits (765), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 227/368 (61%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS + AV + GY KPTP+Q K IPLVL+ DV AQTGTGKTA++ LP+L Sbjct: 1 MVFEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 IL K + ++ R LIL PTRELA+QV + + YGKN L+ A + GG+ F Q K Sbjct: 61 HILNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVPLSSAAIYGGVKFTPQAK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL++G D+LI TPGR+L+H G + ++ +EI+V DEADR+LDMGF +Q + L P Sbjct: 121 KLDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFS ++ ++++SE L+ P + +N A+ +E +KC LL Sbjct: 181 RQTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLY--LVDKERKCELLSF 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ + + ++F K++ + L G +HG+ R + + FKE I+ Sbjct: 239 MIGTHN-WHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+A+RGLDI D+ +V N+++P AE+Y HR GRTGRAG+ G+A +LVA+E+ Sbjct: 298 VLVATDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKF 357 Query: 358 DAIEKLIE 365 IEK+++ Sbjct: 358 KEIEKILK 365 >gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a F6854] gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578] gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923] gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a F6854] gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578] gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923] Length = 522 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L+ D+ G AQTGTGKTA+F LPM+ Sbjct: 6 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 66 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++++E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 360 TTKKRMQPLQA 370 >gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171] Length = 525 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 159/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 4 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 64 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKF 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 121 PQIVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIF K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 239 -APELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 358 TTKKRMQPLQA 368 >gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506] gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506] Length = 557 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 150/365 (41%), Positives = 229/365 (62%), Gaps = 5/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGL+ ++ A+ +A + PTPIQ + +P VL D+ GIAQTGTGKTA+F LP+L Sbjct: 9 FPELGLAEPILKALAEANHSTPTPIQAQAVPQVLAGRDLVGIAQTGTGKTAAFALPILHH 68 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++ R R R L+L PTREL+ Q+ ++F YGK+ + AL IGG+P Q + L Sbjct: 69 LVTKRLRPERRSARALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPIGRQARSLA 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR++D + ++ +E+ V+DEAD+MLDMGFI I++I + +P R+ Sbjct: 129 GGVDVLVATPGRLVDLLENNAVRLDMVEVFVLDEADQMLDMGFIHAIRSIVARLPHKRRN 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K+++ L +P R+ V + TA+ IE + + K LL ++L Sbjct: 189 LFFSATMPREIEKLADTLLSDPVRVAVTPVAKTADKIEQKVF--FTDRAGKPNLLVEVL- 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + T+ ++F K + SL G + AIHGN Q R + L+ F++G ++++V Sbjct: 246 GEPTLDRALVFSRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALAAFRQGVVKVLV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P V HV N+D+PN E+Y+HRIGRT RAGR G A + E+ + I Sbjct: 306 ATDIAARGIDVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERPFLRDI 365 Query: 361 EKLIE 365 E+LI+ Sbjct: 366 ERLIK 370 >gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311] gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311] Length = 502 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 157/383 (40%), Positives = 237/383 (61%), Gaps = 13/383 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS +++ A+ +G+ + TPIQ +TIPL L+ DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELGLSSQLLLAIERSGFEEATPIQAETIPLALKGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK + + + L++ PTRELA Q + + G++ + + + GG Q + L+ Sbjct: 61 ---EKIDTKNQKLQGLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIRALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + IE LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 ERPQIVVGTPGRLLDHLNRRTLKLEVIETLVLDEADEMLNMGFLEDIEKIISQVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++NP +++ TA+ I+ +V ++ +K ++ +LL Sbjct: 178 LLFSATMPTAIKNIGIKFMKNPDHVKIKAKEMTADLIDQYYVR--SKDYEKFDIMTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383 E L +K+ +S+L PP E Sbjct: 355 EDLTKKR-------MSTLRPPTE 370 >gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271] gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271] Length = 527 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 237/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++KVD + + +L+ LE Sbjct: 358 TTKRKVDRM--EAPTLDEALE 376 >gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842] gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 200] gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis Bt407] gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842] gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis Bt407] gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 200] gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar chinensis CT-43] Length = 529 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNG 373 ++KVD + Sbjct: 358 TTKRKVDRMEA 368 >gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 4222] gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 4222] Length = 521 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNG 373 ++KVD + Sbjct: 358 TTKRKVDRMEA 368 >gi|291614807|ref|YP_003524964.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] gi|291584919|gb|ADE12577.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] Length = 466 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 163/391 (41%), Positives = 240/391 (61%), Gaps = 26/391 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY +PTPIQ + IP++L+ D+ G AQTGTGKTA F LP+L Sbjct: 1 MSFKSLGLSEEIARAVSERGYTEPTPIQAQAIPVILKGGDLMGGAQTGTGKTAGFTLPLL 60 Query: 61 T-ILEK--------------GR-------ARVRMP-RTLILEPTRELAAQVADNFEKYGK 97 ++EK GR + +R P R L+L PTRELAAQV ++ YGK Sbjct: 61 QRLMEKPISGQPSPQSSPASGRGGEREKHSSIRAPIRALVLTPTRELAAQVEESVRLYGK 120 Query: 98 NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157 L ++ GG+ Q K+L D+L+ TPGR+LDH + + ++++EILV+DEADR Sbjct: 121 YLPLKSMMMFGGVNINPQIKQLHGRVDILVATPGRLLDHLQQKTVDLSHVEILVLDEADR 180 Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217 MLDMGFI I+ + +++P RQ LLFSAT +DE++ +++ L NP IEV + E I Sbjct: 181 MLDMGFIRDIKRVLAVLPKQRQNLLFSATFSDEIKLLADGLLNNPALIEVARRNQANELI 240 Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 E +K LL L++ + + ++F K NL L K+G AIHG Sbjct: 241 EQRVYPV--DRERKRNLLTHLIKDHNWFQV-LVFTRTKHGANNLADHLNKEGIPAMAIHG 297 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 N Q +R + L+ FK +Q++VA+D+AARG+DI ++ HV N+++PN E+Y+HRIGRTG Sbjct: 298 NKSQAARTRALAEFKTAKLQVLVATDIAARGIDISELPHVVNYELPNVPEDYVHRIGRTG 357 Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 RAG G+A +LV ++ K + IE+LI++++ Sbjct: 358 RAGSEGEASSLVCIDEKKLLHDIERLIKREI 388 >gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1] gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1] Length = 931 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 235/371 (63%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L +V AV +GY KPTPIQ + IP +L DV +QTGTGKTA+F LP+L+ Sbjct: 306 FRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSR 365 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ R R P+ L+L PTRELA QVA +F KYG + + VA + GG +E Q K+L R Sbjct: 366 VD---VRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRR 422 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L + +++ LV+DEAD ML+MGF+ +Q + P RQ Sbjct: 423 GVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVA 482 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++K+++ +L +P RI + + + TA ++ A + K L ++L+ Sbjct: 483 LFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQR--ALFVSPRDKIDALTRILEV 540 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T I+F K + +++ L +QGFS A++G++ Q+ R + + K G + ++VA Sbjct: 541 EET-DGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 599 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFNFD+P+ +E+Y+HRIGRTGRAGR G+A + + + IE Sbjct: 600 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 659 Query: 362 KLIEKKVDWLN 372 ++ ++ ++ Sbjct: 660 NTTKQPIEIID 670 >gi|254487619|ref|ZP_05100824.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101] gi|214044488|gb|EEB85126.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101] Length = 437 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 157/376 (41%), Positives = 239/376 (63%), Gaps = 9/376 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF +GL ++V A+ + G PTPIQ + IP + DV G+AQTGTGKTA+F +P++ Sbjct: 3 DFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62 Query: 62 -ILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +LE + R R R L+L PTRELA Q+ +N + + + L +++GG Q K+L Sbjct: 63 QMLEMEARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKAMMVVGGQSINPQIKRL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG D+L+ TPGR+LD +R +L++ LV+DEAD+MLDMGFI ++ I S++P RQ Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIASVLPKERQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237 T+LFSATM + +++ ++L +P RIEV+ P A+ + E F+A ++K ALL + Sbjct: 183 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAK----AEKKALLIE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ T + ++F K L L K GF +IHGN Q R + + +FK+G I Sbjct: 239 LL-AKHTEERALVFGRTKHGCEKLMKDLVKSGFKAASIHGNKSQGQRDRAIESFKKGDIT 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIPDV HV+N+++PN +NY+HRIGRT RAG+ G A A +++ + Sbjct: 298 VLVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357 Query: 358 DAIEKLIEKKVDWLNG 373 I+K ++ + +G Sbjct: 358 KDIQKTMKIAIPVASG 373 >gi|296105809|ref|YP_003617509.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99 Alcoy] gi|295647710|gb|ADG23557.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99 Alcoy] Length = 414 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 163/373 (43%), Positives = 229/373 (61%), Gaps = 10/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L + AV + GY PT IQ+K IPL+L HD+ G AQTGTGKTASFVLP Sbjct: 1 MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLP-- 58 Query: 61 TILEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 IL+K + + R LIL PTRELA QV ++ +YGK L A++ GG+ Q Sbjct: 59 -ILQKASQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQI 117 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K+L+ G ++L+ TPGR+LD + +G + + I+ LV+DEADRMLDMGFI I+ I L+P Sbjct: 118 KQLDSGLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT T E++ ++ N L I++ ++ +TI+ + + K ALL Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSV--DRNHKLALLS 235 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL ++ ++F K L L + AIHGN Q R K L++FK G + Sbjct: 236 HLLH-KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q ++A+D+AARG+DI + V NFD+P+ E+Y+HRIGRTGRAG G A +LV+ E+IK Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354 Query: 357 IDAIEKLIEKKVD 369 + +IEKLI +K++ Sbjct: 355 LLSIEKLINQKLE 367 >gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18] gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29] gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3] gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3] gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29] gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18] Length = 529 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 230/371 (61%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +K R + +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 62 -DKVDTRKEAVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNG 373 ++KVD + Sbjct: 358 TTKRKVDRMEA 368 >gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51] gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 537 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 154/367 (41%), Positives = 236/367 (64%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ LS +V+ A+ + G+ +P+PIQ IP+ + D+ G AQTGTGKTA+F +P I Sbjct: 16 FGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIP---I 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK + + + LIL PTRELA QV++ K GK ++ + GG + Q + L G Sbjct: 73 CEKINPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRFG 132 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTL 181 + V++ TPGRILDH NRG L + ++++V+DEAD MLDMGF+ I+ I VP RQ + Sbjct: 133 SQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVDDIETILKQVPKEERQVM 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++K+++N++ PK + V+ T IE F T + K L +++ Sbjct: 193 LFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQVFYETRDKI--KVDALCRIIDM 250 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D + IIFC K+ V L +LE +G+ A+HG++ Q+ R +++ F++G ++L+VA Sbjct: 251 ED-IGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVA 309 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI +V HV NFD+P E+Y+HRIGRTGRAGR G+A TLV+ + + + IE Sbjct: 310 TDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIE 369 Query: 362 KLIEKKV 368 +LI+ ++ Sbjct: 370 RLIKTRI 376 >gi|158522360|ref|YP_001530230.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511186|gb|ABW68153.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans Hxd3] Length = 425 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 158/369 (42%), Positives = 227/369 (61%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F G +P+V + +AGY PTPIQ++ I V++ DV G+AQTGTGKTA+FVLP+L Sbjct: 1 MNFEAFGFNPQVAAGIKEAGYAVPTPIQVQAIAPVMENRDVMGMAQTGTGKTAAFVLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L KG+ R LIL PTRELA Q G+ L A + GG+ Q +KL+ Sbjct: 61 HRLMKGQKG--GIRALILAPTRELAEQTHQAIGVLGRKTGLKSATVYGGVGITPQIQKLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+++ PGR+LDH R ++ +E+LVIDEAD++ DMGF P I+ I + +P RQT Sbjct: 119 K-VDIVVACPGRLLDHIGRRTANLSKLEVLVIDEADQLFDMGFFPDIKKILTHLPKQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++K++ + LQNP ++V + A+T+ H AQ+ K LL L Q Sbjct: 178 LLFSATMPAEIRKLAADILQNPATVQVGN-EAPADTVSHALYPV-AQHLKTAFLLDLLKQ 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +Q ++ ++F K NL L GF ++ GN+ Q R L F++GT Q++V Sbjct: 236 TQ--ARSVLVFTRTKHRAKNLDQKLAGAGFRSTSLQGNLSQVKRQAALDGFRKGTFQILV 293 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+DVP+ E YIHRIGRTGRA G+AFT + ED + AI Sbjct: 294 ATDIAARGIDVTRVSHVINYDVPSTPEAYIHRIGRTGRATCTGEAFTFITGEDRNMVRAI 353 Query: 361 EKLIEKKVD 369 +L+ +++ Sbjct: 354 NRLLGSEIE 362 >gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067] Length = 526 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 159/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 6 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 66 IDQKSNSVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKF 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 123 PQIVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIF K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 241 -APELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 360 TTKKRMQPLQA 370 >gi|269963221|ref|ZP_06177555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi 1DA3] gi|269832026|gb|EEZ86151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi 1DA3] Length = 421 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 157/404 (38%), Positives = 252/404 (62%), Gaps = 9/404 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++FADLG+ ++V + V PTP+Q K+IP VL+ D+ AQTGTGKTA+F LP++ Sbjct: 7 VNFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ + R P+ LIL PTRELA QV DN +Y N +L + + GG Q +KLE Sbjct: 67 QTVQQ-KKRNGTPQALILVPTRELAQQVMDNLTQYSANTDLKIVCVYGGTSIGVQKRKLE 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+LI TPGR+LDH G + ++ +LV+DEADRMLDMGF P +Q I +P +Q Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPQDKQI 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT ++ ++ + +P +EV+ ++TAET++ +K LL L+ Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++F K+ L L+ G +I+G+ Q +R + L FKEG ++ ++ Sbjct: 244 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKEGKVRALI 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++ + AI Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAI 362 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 E L+++++ +WL G SL +E+++ ++ R+ + +K Sbjct: 363 ENLLDQRLPQEWLEGFEPSL---IEEVEPERNGGGRRKSRSSEK 403 >gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 567 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 155/385 (40%), Positives = 239/385 (62%), Gaps = 8/385 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LG+S +V + G PTPIQ + IPL+L+ D+ G+AQTGTGKTA+F LP++ Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L ++ R R RTLIL PTREL Q+A+ +K+ + +L + +++GG+ Q +L Sbjct: 63 KLLADERRPDNRTTRTLILAPTRELVNQIAETLKKFIRKSHLRINVVVGGVSINKQQLQL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+G DVL+ TPGR+LD NR + + + LV+DEAD+MLD+GF+ ++ I +VP RQ Sbjct: 123 EKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++ ++L +P ++EV P A+ +E +V A + K LL++ L Sbjct: 183 TMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQ-YVHFVAGKNDKTELLRKSL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ I+F K L LE G+SV +IHGN Q R + L F++G+I+ + Sbjct: 242 -TENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DIP V HV+N+D+P + Y+HRIGRT RAGR G A A ++ K + Sbjct: 301 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 360 Query: 360 IEKLIEKKVDWLNGD----LSSLNP 380 IE+L+ + +G+ +SS P Sbjct: 361 IERLMGIDIAVASGEAPANISSAGP 385 >gi|146307171|ref|YP_001187636.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina ymp] gi|145575372|gb|ABP84904.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp] Length = 560 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 149/367 (40%), Positives = 231/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL P ++ A+ GY +P+PIQ + IP++L HD+ G AQTGTGKTA+F LP+L+ Sbjct: 8 FAALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K + V + GG P Q K L Sbjct: 68 IDPAK---REPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKALRM 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH R +++ I+ LV+DEAD ML +GF+ ++ I +P +RQ++ Sbjct: 125 GAQIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ P+ I++ + T IE + +A L +LL+ Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVL--RLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I F K+ ++L +LE +GF A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2] gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense DCB-2] Length = 530 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 154/367 (41%), Positives = 236/367 (64%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ LS +V+ A+ + G+ +P+PIQ IP+ + D+ G AQTGTGKTA+F +P I Sbjct: 9 FGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGVDLIGQAQTGTGKTAAFGIP---I 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK + + + LIL PTRELA QV++ K GK ++ + GG + Q + L G Sbjct: 66 CEKVNPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRFG 125 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTL 181 + V++ TPGRILDH NRG L + ++++V+DEAD MLDMGF+ I+ I VP RQ + Sbjct: 126 SQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKEERQVM 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++K+++N++ PK + V+ T IE F A+ K L +++ Sbjct: 186 LFSATMPPEIKKLAQNYMHQPKSVAVSRDELTVPLIEQVFYE--ARDKIKVDALCRIIDM 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D + IIFC K+ V L +LE +G+ A+HG++ Q+ R +++ F++G ++L+VA Sbjct: 244 ED-IGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI +V HV NFD+P E+Y+HRIGRTGRAGR G+A TLV+ + + + IE Sbjct: 303 TDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIE 362 Query: 362 KLIEKKV 368 +LI+ ++ Sbjct: 363 RLIKTRI 369 >gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 526 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 159/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 6 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 66 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKF 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 123 PQIVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIF K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 241 -APELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 360 TTKKRMQPLQA 370 >gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2] gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2] Length = 535 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 150/368 (40%), Positives = 230/368 (62%), Gaps = 10/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ GL PKV+ A+ + G+ + TPIQ K+IP+ + D+ G AQTGTGKTA+F +P++ Sbjct: 4 FAEFGLEPKVLQAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIPLINK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + R+ LI+ PTRELA QVAD K K L + GG Q + L++ Sbjct: 64 ISINEERIV---ALIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQIRALKKK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH NR + + +++ +V+DEAD MLDMGF+ IQ+I VP RQTLL Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVPEERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLLQ 240 FSATM +QK+++ FL+NP+ + V + TA TI+ + + ++ C LL Sbjct: 181 FSATMPPNIQKLAQQFLKNPEHVAVISKQVTAPTIQQNYFEVHERQKFEALCRLL----- 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + IIF K+ V L L+K+G++ +HG++ Q R ++ F++G+I ++V Sbjct: 236 DMESPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVLV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV NFD+P E+Y+HRIGRTGRAG+ G A++ V ++ H+ I Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAYSFVTPREVDHLHFI 355 Query: 361 EKLIEKKV 368 EK+ +++ Sbjct: 356 EKVTRQRI 363 >gi|157374161|ref|YP_001472761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157316535|gb|ABV35633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 435 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 169/439 (38%), Positives = 257/439 (58%), Gaps = 21/439 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY K TP+Q + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E R+ R LIL PTRELA+Q+ADN Y K ++V + GG+ E Q Sbjct: 61 QKMFDNPTETQRSNTR---ALILTPTRELASQIADNINDYSKYMEVSVLTIYGGVKLETQ 117 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +KL+RGAD+++ TPGR+L+H L ++N++ +V+DEADRMLDMGFI IQ I V Sbjct: 118 AQKLKRGADIIVATPGRLLEHLQACNLNLSNVDFMVLDEADRMLDMGFISDIQKIMQAVN 177 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT + ++K++ + L PK I V++ +STA+T+ V + +K LL Sbjct: 178 KNRQNLLFSATFSSAVKKLANDMLVKPKLISVDSQNSTADTVSQ--VVYPVEQRRKRELL 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L+ + + ++F + L L G + +HG Q +R + L FKEG Sbjct: 236 SELI-GKKNWQQVLVFTATRDAADKLVKELNLDGITSAVVHGEKAQGNRRRALREFKEGK 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VA+++AARGLDI D+ +V N+D+P AE+Y+HRIGRTGRAG+ G A +LV++E+ + Sbjct: 295 VRALVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 354 Query: 356 HIDAIEKLIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNP----IPQKSTG 405 + IEKLI K++ + G L ++K R++N I +K+ G Sbjct: 355 TLADIEKLIGKQLRRITVPGYEVGSRELLIKQIQKRRSFAKKQQREDNTGAQMIAEKNLG 414 Query: 406 FDRRKKNYSSQKSHIPLKE 424 R K SS K+ +K+ Sbjct: 415 SRRVKVKNSSNKAPTKVKK 433 >gi|149179168|ref|ZP_01857736.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797] gi|148841986|gb|EDL56381.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797] Length = 445 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 152/368 (41%), Positives = 230/368 (62%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L V A+++ Y PTPIQ +TIP L+ DV G AQTGTGKTA+ LP+L Sbjct: 4 FQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPILNQ 63 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K + P L+L PTRELA Q+ D+F+ YG++ L L+ GG+ Q K L+ Sbjct: 64 LGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIYGGVGQGNQVKALK 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +L+ TPGR+LD N+G + +N +E+ V+DEADRMLDMGF+P ++ I + +P RQ+ Sbjct: 124 RGAHILVATPGRLLDLMNQGHIKLNQLEVFVLDEADRMLDMGFLPDLKRIITQLPTQRQS 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSAT+ ++ +++ + L P + V +++ E I+ + + + + K LLQ++L Sbjct: 184 LFFSATLAPKITELAHSLLSKPVTVNVTPKTTSVEKIQQQLM--FVERNFKQPLLQKIL- 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D ++ ++F K+ L L + GF AIHGN Q +R + L F+ +Q++V Sbjct: 241 GGDEVERALVFTKTKRTANTLSQRLVRSGFKATAIHGNKSQGARQQALEAFRRKQVQVLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV NFD+P E Y+HRIGRTGRAG +G A + ++ + K + +I Sbjct: 301 ATDVAARGIDIDGITHVINFDLPVEPEAYVHRIGRTGRAGANGIAISFCSESERKELRSI 360 Query: 361 EKLIEKKV 368 E+LI +KV Sbjct: 361 ERLIGQKV 368 >gi|328544967|ref|YP_004305076.1| ATP-dependent RNA helicase protein [polymorphum gilvum SL003B-26A1] gi|326414709|gb|ADZ71772.1| ATP-dependent RNA helicase protein [Polymorphum gilvum SL003B-26A1] Length = 503 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 159/377 (42%), Positives = 225/377 (59%), Gaps = 5/377 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LGLS ++ ++ GY PTPIQ IP +L HD+ G+AQTGTGKTA+F LP+ Sbjct: 22 FEALGLSSPLLKSIAALGYEAPTPIQTDAIPHILAGHDLMGLAQTGTGKTAAFGLPLANR 81 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + A R R LIL PTREL Q+A N + K L VA+++GG+ Q K+L Sbjct: 82 MLASADTAAPRTTRALILAPTRELVTQIAQNLVAFVKGSPLQVAVVMGGVSIGGQIKRLA 141 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD +R L ++ + LV+DEAD+MLD+GFI ++ I +LVP RQT Sbjct: 142 RGTDILVATPGRLLDLVDRNALRLDEVGYLVLDEADQMLDLGFIHALRKIAALVPKKRQT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++ ++ +L++P R+EV TA+ ++ C V AQ K L+ L Sbjct: 202 LLFSATMPKQIEDLARAYLKDPVRVEVAPAGRTADKVDQC-VHFVAQADKTDLLISCL-- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+ ++F K + L G AIHGN Q R + + K G +++V Sbjct: 259 SERAQDLSLVFARTKHGADKVVRKLVAAGLKANAIHGNKSQNQRDRAIKELKTGETRILV 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIP V HV+NFD+P+ E+Y+HRIGRT RAG G A A E+I + I Sbjct: 319 ATDVAARGIDIPGVSHVYNFDLPDVPESYVHRIGRTARAGADGDAVAFCAPEEIGLLRDI 378 Query: 361 EKLIEKKVDWLNGDLSS 377 EKL KV +G++ + Sbjct: 379 EKLTGLKVRVASGEVPA 395 >gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279] gi|210160006|gb|EEA90977.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279] Length = 595 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 157/379 (41%), Positives = 222/379 (58%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS +V+ AV D GY PTP+Q +IP L DV AQTGTGKTA+F+LP + Sbjct: 41 FADLGLSDEVLAAVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGTGKTAAFLLPTMNN 100 Query: 63 LE---KGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L +GRAR R+ P L++ PTRELA Q+ D K T ++GG+ + Q Sbjct: 101 LPHVPRGRARGRVAAQGPLMLVVTPTRELAQQIEDVCRAIAKCTGHTSVTVVGGVSYNPQ 160 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL+RG D+LI TPGR+ D ++G ++ +++LV+DEADRMLDMGF+P ++ I Sbjct: 161 RDKLKRGCDILIATPGRLQDLIDQGACSLDQVQVLVLDEADRMLDMGFLPAVRRIVGYTR 220 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT+ ++ + + +P R+E+ +STA+T+E + K ALL Sbjct: 221 DDRQTLLFSATLDEQAVGSITDLVHDPARVEIAPVTSTADTVEQYVLPV--SLEAKNALL 278 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L+ + + I+FC K L + G + AIHG+ Q R + L F+ G Sbjct: 279 ASVLKREGASR-AIVFCRTKHRADACSRRLARAGITCAAIHGDRSQAQRERALKAFRAGE 337 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++VA+D+ ARG+DI DV +V NFDVP +YIHRIGRTGRAG G + T V +D+ Sbjct: 338 CDVLVATDVLARGIDISDVRYVVNFDVPEDPVDYIHRIGRTGRAGELGWSLTFVTPDDVA 397 Query: 356 HIDAIEKLIEKKVDWLNGD 374 IE L+ K D + + Sbjct: 398 EFYDIEALMGKTADLFDAE 416 >gi|119357064|ref|YP_911708.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354413|gb|ABL65284.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides DSM 266] Length = 418 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 159/370 (42%), Positives = 234/370 (63%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L + ++ A+ + GY PTPIQ + IP+VLQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MQFESLNIIEPILLALREEGYSTPTPIQAEAIPIVLQGIDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL + + + R R+LI+ PTRELA Q+ ++F+ YG++ LT ++ GG+ Q Sbjct: 61 QILSENKLVDKSRKIRSLIVTPTRELAIQIGESFKAYGRHTGLTNTVIFGGVNQNPQTAS 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD N+G L + ++EILV+DEADRMLDMGFI ++ I + +P + Sbjct: 121 LLRGVDILVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDVKKILAHLPKKK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+ K++ L NP ++ V SST E I + K +LL L Sbjct: 181 QSLFFSATMPPEIVKLAATILHNPSKVSVTPVSSTVEIINQAIY--FVDKGNKNSLLLDL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++ +K ++F K + L K + AIHGN Q +R + L+NFK T ++ Sbjct: 239 LKDKN-IKTSLVFTRTKHGADKVVKYLLKHHITAEAIHGNKAQNARQRALNNFKAQTTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ D+ +V NF++PN E Y+HRIGRTGRAG G A + E+ +++ Sbjct: 298 LVATDIAARGIDVDDLEYVINFEMPNIPETYVHRIGRTGRAGAKGTALSFCDAEEKEYLR 357 Query: 359 AIEKLIEKKV 368 IEKLI KK+ Sbjct: 358 DIEKLIAKKI 367 >gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3] gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3] Length = 530 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 237/381 (62%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPDTHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 ++KVD + + +L+ LE Sbjct: 358 TTKRKVDRM--EAPTLDEALE 376 >gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 10876] gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 10876] Length = 528 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 4 FRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ +++ PTRELA QV + K GK+ + + + GG Q + L++ Sbjct: 64 VDTNKEAVQ---GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIER 357 Query: 363 LIEKKVDWLNG 373 ++KVD + Sbjct: 358 TTKRKVDRMEA 368 >gi|183598226|ref|ZP_02959719.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827] gi|188020395|gb|EDU58435.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827] Length = 445 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 174/428 (40%), Positives = 259/428 (60%), Gaps = 23/428 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F+DL L+ +++ A+ + GY PTPIQ + IP VL HD+ AQTGTGKTA F LP+L Sbjct: 4 FSDLALNEEILLAINELGYEAPTPIQQQAIPAVLDGHDLLASAQTGTGKTAGFTLPILQK 63 Query: 62 ILEKGR-ARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++ R + R P R LIL PTRELAAQVA+N ++Y ++ + ++ GG+ Q KL Sbjct: 64 LISTPRIGKDRKPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR+LD ++ + ++ +EILV+DEADRMLDMGFI I+ + S +P RQ Sbjct: 124 RGGVDILIATPGRLLDLEHQNAVNLSQVEILVLDEADRMLDMGFIHDIRRVISKLPKKRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT ++E+++++ L NP IEV +S +E + FV + +K LL ++ Sbjct: 184 NLLFSATFSNEIKQLANKLLDNPVTIEVAPRNSASEQVTQ-FV-HHVDKKRKAELLSYMI 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F K L L K G AIHGN Q +R + L++FK G ++++ Sbjct: 242 -GRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDVRVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + +V NF++PN AE+Y+HRIGRTGRA G A +LV +++K + Sbjct: 301 VATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRADTTGMAVSLVCVDELKLLKD 360 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI---PQKSTGFDRRKKNYSSQ 416 IEKL++K V P+ I+ + + + K PI PQ++ +RR N Sbjct: 361 IEKLLKKPV------------PVMAIEGYEPDPSIKPEPIQKAPQRNN--ERRSANKRHN 406 Query: 417 KSHIPLKE 424 S P +E Sbjct: 407 TSVKPRRE 414 >gi|148358461|ref|YP_001249668.1| DEAD box family transporter ATP-dependent RNA helicase [Legionella pneumophila str. Corby] gi|148280234|gb|ABQ54322.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila str. Corby] Length = 414 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 163/373 (43%), Positives = 229/373 (61%), Gaps = 10/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L + AV + GY PT IQ+K IPL+L HD+ G AQTGTGKTASFVLP Sbjct: 1 MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLP-- 58 Query: 61 TILEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 IL+K + + R LIL PTRELA QV ++ +YGK L A++ GG+ Q Sbjct: 59 -ILQKASQQTQTSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQI 117 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K+L+ G ++L+ TPGR+LD + +G + + I+ LV+DEADRMLDMGFI I+ I L+P Sbjct: 118 KQLDSGLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT T E++ ++ N L I++ ++ +TI+ + + K ALL Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSV--DRNHKLALLS 235 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL ++ ++F K L L + AIHGN Q R K L++FK G + Sbjct: 236 HLLH-KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q ++A+D+AARG+DI + V NFD+P+ E+Y+HRIGRTGRAG G A +LV+ E+IK Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354 Query: 357 IDAIEKLIEKKVD 369 + +IEKLI +K++ Sbjct: 355 LLSIEKLINQKLE 367 >gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282604|gb|EDT48028.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 533 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 236/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R V+ L++ PTRELA Q + ++G+ + V + GG E Q K L Sbjct: 61 DKIDTSRNLVQ---ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + ++E L++DEAD ML+MGF+ I+ I S VP +RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ NF++NP+ +++ T E I+ ++ + ++K + +L+ Sbjct: 178 LLFSATMPEPIKRIGVNFMKNPEHVKIAAKELTTELIDQYYL--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R+++L +FK + ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLAII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|197104230|ref|YP_002129607.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium zucineum HLK1] gi|196477650|gb|ACG77178.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium zucineum HLK1] Length = 470 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 156/369 (42%), Positives = 229/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL+ ++ A+ D GYV PTPIQ + IP V+ D+ GIAQTGTGKTA+F LP+L Sbjct: 4 FTDLGLAKPLLKALADEGYVNPTPIQAQAIPGVMAGRDLLGIAQTGTGKTAAFALPILHR 63 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L ++ A R R L+L PTRELA Q+A++F+ YG++ L+VA++ GG+ + Q + L Sbjct: 64 LAEDRRPAPRRSARVLVLSPTRELATQIAESFKAYGRHLGLSVAVIFGGVKYGPQMRALA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR++DH +++ +E V+DEAD+MLDMGFI I+ I +P RQ Sbjct: 124 GGVDVLVATPGRLIDHLQEKSVVLEGVETFVLDEADQMLDMGFIVPIRRIVKFLPKRRQN 183 Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L FSATM E++K++ L NP ++ V PS+T E I + + + +K ALL +L Sbjct: 184 LFFSATMPAEIEKLTGEILNPNPLKVTVTPPSTTVERINQRVL--FVEQQRKRALLAELF 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + K I+F K+ + LE+ G +IHG+ Q R + L+ FK G ++ + Sbjct: 242 DDA-SFKRVIVFTRTKRGADRVARGLEQVGVEAASIHGDKSQGQRERALAAFKAGDVRAL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI V HV F++PN E Y+HRIGRT RAG G A A ++ + Sbjct: 301 VATDIAARGIDIDAVSHVVQFELPNVPEAYVHRIGRTARAGADGSAVAFCADDERNLLKD 360 Query: 360 IEKLIEKKV 368 IEK+ ++++ Sbjct: 361 IEKVTKQRI 369 >gi|254498821|ref|ZP_05111531.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12] gi|254351952|gb|EET10777.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12] Length = 418 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 154/372 (41%), Positives = 238/372 (63%), Gaps = 4/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ AV ++GY +P+PIQ ++IP +L+ +D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFTSLGLIEPLLRAVSESGYNEPSPIQAQSIPTILRGNDLLASAQTGTGKTASFVLPIL 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + RA+ + LIL PTRELAAQV ++ +YGK+ +L A++ GG+ Q KL Sbjct: 61 QRLHNQPRAKSNHTKVLILTPTRELAAQVHESIRQYGKHLSLRSAVVFGGVKISPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G ++L+ TPGR++D + + + +++ LV+DEADRMLDMGFI I+ I +L+P RQ Sbjct: 121 RGGVEILVATPGRLMDLYQQRAIQFSDVNTLVLDEADRMLDMGFIHDIKRIINLLPKERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT ++ ++ +++ L P I+V ++TA ++ ++K ALL L+ Sbjct: 181 NLLFSATFSEAIRTLAKGLLNKPVEIDVAPRNTTAIAVKQTVHPV--DKNRKHALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ ++F K L L ++ AIHGN Q R K+L++FK G + ++ Sbjct: 239 H-KNKWGQTLVFSKTKHGANKLVQQLAEEHIYAAAIHGNKSQSQRTKVLADFKSGELHIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAG G A +LV +++ + A Sbjct: 298 VATDIAARGIDIDQLPCVVNYDLPQVAEDYVHRIGRTGRAGASGSAISLVCADEVGQLQA 357 Query: 360 IEKLIEKKVDWL 371 IEKLI++K++ + Sbjct: 358 IEKLIKRKLERI 369 >gi|114799942|ref|YP_759839.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444] gi|114740116|gb|ABI78241.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444] Length = 464 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 153/371 (41%), Positives = 228/371 (61%), Gaps = 9/371 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL+ +++ ++ AGY PTPIQ + IPLV+Q D+ G+AQTGTGKT +F P+L Sbjct: 8 DFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILD 67 Query: 62 ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + A VR R L+L PTRELA Q+A +F YG NL V ++ GG Q ++L Sbjct: 68 RLSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGA +L+ TPGR++D + + ++ +E L++DEAD+MLD+GFI ++ I VP RQ Sbjct: 128 ERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237 TL FSATM ++ ++ FL+NP + V P++TA IE CFV + +K +LL + Sbjct: 188 TLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFV----EQPEKASLLIE 243 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ + +++ I+F K + L K AIHGN Q R K L FK G + Sbjct: 244 KIRDPE-LRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVP 302 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+ + + HV N+D+P+ E ++HRIGRT RAG G A + ++++ + Sbjct: 303 ILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTL 362 Query: 358 DAIEKLIEKKV 368 AIEKL K+ Sbjct: 363 RAIEKLTGLKL 373 >gi|315126148|ref|YP_004068151.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas sp. SM9913] gi|315014662|gb|ADT68000.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas sp. SM9913] Length = 607 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 146/348 (41%), Positives = 224/348 (64%), Gaps = 8/348 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LSP ++ AV + GY P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L Sbjct: 7 FESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNN 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ FE+Y K+ + V L GG + Q L R Sbjct: 67 IDPS---VKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSALRR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH NRG + + ++ LV+DEAD ML MGFI ++NI P +QT Sbjct: 124 GAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQTC 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++Q +S ++ NP+++ ++ +ST ++E F + +K A+++ L Sbjct: 184 LFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAHVHKNK--AIVRFLEAE 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + I+F + + V L LE++GFS ++G+++Q++R + + K G + +++A Sbjct: 242 Q--YEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +D+AARGLD+ + V N+D+P +E Y+HRIGRTGRAGR GKA V Sbjct: 300 TDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFV 347 >gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA41301] Length = 524 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 153/372 (41%), Positives = 234/372 (62%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + NIE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++ Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ Sbjct: 294 VATDIAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353 Query: 360 IEKLIEKKVDWL 371 IE L +K++ L Sbjct: 354 IENLTKKRMKGL 365 >gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL F2-515] Length = 394 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L+ D+ G AQTGTGKTA+F LPM+ Sbjct: 4 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 64 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++++E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 358 TTKKRMQPLQA 368 >gi|162148995|ref|YP_001603456.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl 5] gi|209545253|ref|YP_002277482.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|161787572|emb|CAP57168.1| putative cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl 5] gi|209532930|gb|ACI52867.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 423 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 161/392 (41%), Positives = 238/392 (60%), Gaps = 17/392 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L+ ++ A+ + GY PTPIQ IP +L D+ G+AQTGTGKTA+F LP+L Sbjct: 4 FADLQLAEPLLRALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPILQR 63 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L RA + R L+L PTRELA+Q+ ++F+ Y ++ L+ ++ GG+ Q + + Sbjct: 64 LLTHHRRANPKGARVLVLAPTRELASQIDESFKSYARHMRLSHTVIFGGVGQGRQVEAMR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVL+ PGR+LD +G + ++ +E+LV+DEADRMLDMGF+ I+ I + +P RQT Sbjct: 124 RGVDVLVAAPGRLLDLMGQGHIDLSGLEVLVLDEADRMLDMGFVRDIRRIVAELPRDRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQL 238 LLFSATM + ++ L++P ++V PSST + I FV T +K+ AL QL Sbjct: 184 LLFSATMPKSIADLAHGLLRDPATVQVTPPSSTVDRIRQAVMFVDT---DNKRAAL--QL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ ++F K + L G AIHGN Q +R + ++ F+ G +++ Sbjct: 239 LVDSPKVERAVVFTLMKHEANKVAAFLNDHGIIAEAIHGNKSQGARERAMAGFRSGAVKV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ DV HVFN+D+PN E+Y+HRIGRT RAGR G A +L E + Sbjct: 299 LVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLR 358 Query: 359 AIEKLIEKKVDWLN--------GDLSSLNPPL 382 IEK I KK+ + + S+L PP+ Sbjct: 359 DIEKAIGKKIPVVQEHPYHSEAAENSTLRPPV 390 >gi|150025749|ref|YP_001296575.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum JIP02/86] gi|149772290|emb|CAL43768.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacterium psychrophilum JIP02/86] Length = 414 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 235/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS + AV + GY+ TPIQ ++IP++L D+ G AQTGTGKTA+F +P++ Sbjct: 1 MLFEDLSLSKSIQRAVFEEGYLSATPIQEQSIPIILAGQDLIGCAQTGTGKTAAFAIPII 60 Query: 61 TILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + ++ RTL++ PTRELA Q+ ++F+ YGK NL + GG+ Q + Sbjct: 61 HNLHRIVGSSKKEKLIRTLVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVE 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L+ G D+LI TPGR+LD +G + ++++ LV+DEAD+MLDMGFI ++ I L P Sbjct: 121 QLKSGIDILIATPGRLLDLHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM +++++E FL +P ++V SST ET++ Y + K LL Sbjct: 181 RQTLLFSATMPIAIRELAEMFLTDPATVQVAPVSSTIETVDQRLY--YVDKADKRQLLYH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ ++ + N ++F K N+ +L+KQG + AIHG+ Q +R + L NFK Sbjct: 239 IIK-EEKLSNILVFSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACD 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + +V NFD+PN E Y+HRIGRTGRAGR G A + K++ + Sbjct: 298 ILVATDIAARGIDIEFLPYVINFDLPNIPETYVHRIGRTGRAGREGMAISFCGKDEEGYW 357 Query: 358 DAIEKLIEKKV 368 I KL + KV Sbjct: 358 KDIIKLTKAKV 368 >gi|327481186|gb|AEA84496.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166] Length = 556 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ V+ A+ GY +P+PIQ + IP++L HD+ G AQTGTGKTA+F LP+L+ Sbjct: 8 FAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +++V + GG P Q K + + Sbjct: 68 IDPAK---REPQALILAPTRELALQVATAFETYSKQMPDVSVVAIYGGAPMGPQLKAIRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +R L++ I LV+DEAD ML +GF+ ++ I +P +RQ++ Sbjct: 125 GAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ P+ I++ + T IE + +A + L +LL+ Sbjct: 185 LFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVL--RLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTNQKV 368 >gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans DSM 20731] gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans DSM 20731] Length = 544 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 156/382 (40%), Positives = 234/382 (61%), Gaps = 10/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L K++ A+ + G+ +P+PIQ IP+ L+ D+ G AQTGTGKTA+F +P I Sbjct: 21 FEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIP---I 77 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++K + R + L++ PTREL QVAD K GK + V + GG P E Q + L+RG Sbjct: 78 IQKINEKDRHIQALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRSLKRG 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH RG + + + LV+DEAD MLDMGF+ ++NI VP RQT+L Sbjct: 138 IQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTML 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + +S+ +++ PK + ++ TA TI+ + T + C ++L + Sbjct: 198 FSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETRDKVDGLC----RILDTT 253 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D K IIFC KK V L +L +G+ +HG++ Q R +++ F+ G + ++VA+ Sbjct: 254 DDCKM-IIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVAT 312 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI ++ HV NFDVP+ +E+Y+HRIGRTGRAG G A T + + + + IE+ Sbjct: 313 DVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIER 372 Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384 I+ K+ + G L + LE+ Sbjct: 373 SIKTKI--IRGTLPTDASVLER 392 >gi|260433348|ref|ZP_05787319.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157] gi|260417176|gb|EEX10435.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157] Length = 416 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 159/414 (38%), Positives = 243/414 (58%), Gaps = 12/414 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL+P + A+ A + +PTPIQ + IPL ++ HD+ G+AQTGTGKT +F LP++ Sbjct: 3 DFDMLGLAPALNDALARAKFTQPTPIQNQAIPLAMEGHDILGLAQTGTGKTLAFGLPLID 62 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + G+ + + LIL PTREL Q+AD+ L VA ++GG Q L Sbjct: 63 HLLAQPGKPAPKTAKALILAPTRELVNQIADSLRSLTTKTKLRVATVVGGQSINKQIMFL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR++D +RG + + ++ LV+DEAD+MLDMGFI ++ I + RQ Sbjct: 123 SRGTDILVATPGRLIDLMDRGAVDLGSVRRLVLDEADQMLDMGFIHALRRIAPELGTPRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQ 237 T+LFSATM +++++S +L NP+R++V+ P A+ I FV+ + K L+Q Sbjct: 183 TMLFSATMPKQMEELSRAYLTNPQRVQVSPPGKAADKITQSVHFVSKPGKPEK----LRQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L SQDT ++F K L L G++ +IHGN Q R + + F+ G I Sbjct: 239 IL-SQDTDALTLVFARTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEIT 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DIP V +V N+D+P +NY+HRIGRT RAGR G+A A ++ + Sbjct: 298 VLVATDVAARGIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEFDLL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 I+KL++ ++ +G + E H R+ P PQ + G R++ Sbjct: 358 RQIQKLMKIQIPVASGTAPEAS---ETTKPGGHQRNRRRGPKPQGAPGAANRRR 408 >gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Enterococcus faecium DO] gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933] gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502] gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410] gi|258615088|ref|ZP_05712858.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO] gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162] gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317] gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04] gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C] gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082] gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A] gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B] gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01] gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Enterococcus faecium DO] gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933] gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502] gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410] gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317] gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162] gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01] gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B] gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A] gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C] gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04] gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082] Length = 503 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 156/384 (40%), Positives = 237/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LSP+++ +V AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R ++ L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 61 EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + ++ LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++NP +++ TA+ I+ +V A+ +K ++ +L Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVR--AKEYEKFDIMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ +++L PP EK Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371 >gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus polymyxa SC2] gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus polymyxa SC2] Length = 525 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 147/366 (40%), Positives = 233/366 (63%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L PKV+ A+ + G+ + TPIQ K+IP+ LQ D+ G AQTGTGKTA+F +PM+ Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMINK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + K ++R LI+ PTRELA QVA+ EK + L + GG Q + L++ Sbjct: 64 ISKNDEKIR---ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH NR + + ++ +V+DEAD MLDMGF+ IQ+I VP RQT+L Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E FL++P+ + V +A I+ ++ + +K L +L+ Sbjct: 181 FSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLIDQAYIEVPER--QKFEALSRLI-DM 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ + I+F K+ V L +L+K+G+S +HG++ Q R ++ F++G+I ++VA+ Sbjct: 238 ESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ V HV NFD+P E+Y+HRIGRTGRAG+ G+A++ V +I H+ IE+ Sbjct: 298 DVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIER 357 Query: 363 LIEKKV 368 + ++ Sbjct: 358 VTRHRI 363 >gi|332704723|ref|ZP_08424811.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554872|gb|EGJ51916.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 517 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 169/430 (39%), Positives = 255/430 (59%), Gaps = 21/430 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L +++ +L AGY PTPIQ + IP VL DV G+AQTGTGKTA+FVLP+L Sbjct: 1 MSFDSFSLDQRIMAGILAAGYTTPTPIQTRAIPAVLAGKDVMGLAQTGTGKTAAFVLPLL 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L A R P R L+L PTRELA Q+ +F GK + A++IGG+ Q K L Sbjct: 61 QRLLNDNAPTRGPIRVLVLAPTRELAVQIHQSFFGLGKQTGIRSAVVIGGVGAMPQIKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 R A V + PGR++D N+G + ++ + LV+DEADRMLDMGF+P ++ + + +P RQ Sbjct: 121 -RQATVAVACPGRLVDLMNQGAVDLSKVSALVLDEADRMLDMGFLPDVRKVMAKLPRQRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM E++ ++E+ L++P ++V+ ++ A T+ H S+K LL++LL Sbjct: 180 NMLFSATMPAEIRSLAESGLRDPVTVQVSN-TAPAATVSHALYPVAG--SRKQDLLEKLL 236 Query: 240 QSQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 D KN ++F K L L +GFSV ++ GN+ Q R + + F+ G ++ Sbjct: 237 N--DLGKNSALVFTRTKHRAKGLAQKLAGKGFSVTSLQGNLSQGRRQEAMDGFRNGKYRV 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARG+D V V NFD+P+ AE Y HRIGRTGRA R+G+A +LVA ED + Sbjct: 295 MVATDIAARGIDCERVSLVVNFDLPDTAEAYTHRIGRTGRAERNGEAVSLVAPEDESQVK 354 Query: 359 AIEKLIEKKVD--WLNG--DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 IE+ + +++ L+G D ++ P + Q + R+ P P+K+ + + Sbjct: 355 FIERSLNLRIERKRLDGFSDSAARAPQYDSQPRTQQS--RRPGPAPRKAI-------DSA 405 Query: 415 SQKSHIPLKE 424 + KS +P++ Sbjct: 406 ATKSLLPVRS 415 >gi|319938171|ref|ZP_08012569.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1] gi|319806692|gb|EFW03341.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1] Length = 437 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 229/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L + A+ Y + TPIQ + IPL+L+ D+ G A+TGTGKTA+F LP+L Sbjct: 1 MKFKELKLIEPLQMAIEKLNYTEATPIQEQAIPLLLEGRDLLGCAKTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + PRT LIL PTRELA Q+ + F+ NL ++ GG+ +Q Sbjct: 61 QKLYLRDESEKYPRTIKALILAPTRELAMQIDETFQSMNSFVNLKSTVIFGGVRQGSQVT 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+ERG DVLI TPGR+ D + +G L +++IE V+DEADRMLDMGFI I+ I +P Sbjct: 121 KIERGIDVLIATPGRLSDLYKQGLLDLSHIEYFVLDEADRMLDMGFINDIRRIMKYIPKQ 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSAT+ E+Q + + L NP+++ V++ T E I+ Y + K LL + Sbjct: 181 RQTMLFSATLPKEIQHLIDEILNNPEKVMVSSGQMTVERIQQSLY--YVDKANKAKLLIK 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL++ + N I+F K+N LC L++ G AIHG+ Q +R++ L+ FKE ++ Sbjct: 239 LLENPQ-IYNAIVFVRTKRNANTLCKKLQRAGIEAEAIHGDKSQNARVRALNRFKEDKVR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ + HV NFD+P +AENY+HRIGRT RAG G A T ++ + Sbjct: 298 VLVATDIAARGIDVDHLTHVVNFDLPEQAENYVHRIGRTARAGADGTAITFCCFQEKSDL 357 Query: 358 DAIEKLIEKKV 368 +EK I +K+ Sbjct: 358 SEVEKFIGEKI 368 >gi|116748890|ref|YP_845577.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697954|gb|ABK17142.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans MPOB] Length = 471 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 162/374 (43%), Positives = 232/374 (62%), Gaps = 13/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +++ A+ D Y PTPIQ + +P++L DV AQTGTGKTA F LP+L Sbjct: 1 MSFHSLGLSAELLRAIADQHYKHPTPIQQQAVPVILDGKDVLAGAQTGTGKTAGFALPLL 60 Query: 61 TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L K R R + R LIL PTRELAAQV ++ YGK L A++ GG+ Q Sbjct: 61 QLLSK-RPRTKGKTSVRALILTPTRELAAQVEESVASYGKYLPLKAAVVHGGVNINPQIA 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL RG D+L+ TPGR+LDH + L + +EILV+DEADRMLDMGFI I+ I +L+P Sbjct: 120 KLRRGIDILVATPGRLLDHVQQRTLDLCAVEILVLDEADRMLDMGFIRDIRKILALLPVR 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ LLF AT +DE++ ++E+ L++P IE NTP+ + + H +K L Sbjct: 180 RQNLLFFATFSDEIKTLAEDLLRSPVLIETERRNTPAESVAQLIHPV-----DRVRKREL 234 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ S + + ++F K L LE G AIH N Q +R + L++FK G Sbjct: 235 LSFLIGS-NNWRQVLVFTRTKHGADRLTRQLEHDGIRAAAIHSNKSQATRTRSLADFKHG 293 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++++VA+D+AARGLDI + HV NF++P+ + +Y+HRIGRTGRA R G A +LV+ ++ Sbjct: 294 DVRVLVATDIAARGLDIDHLPHVVNFELPSVSRDYVHRIGRTGRAERSGTAISLVSIDER 353 Query: 355 KHIDAIEKLIEKKV 368 + + IE+L+ + + Sbjct: 354 EQLKEIERLLNRAI 367 >gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP19-BS75] gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1873-00] gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6] gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54] gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031] gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585] gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP19-BS75] gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6] gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1873-00] gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54] gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585] gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031] Length = 524 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 153/372 (41%), Positives = 234/372 (62%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + NIE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++ Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353 Query: 360 IEKLIEKKVDWL 371 IE L +K++ L Sbjct: 354 IENLTKKRMKGL 365 >gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. KMS] gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. JLS] gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS] gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS] gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS] Length = 557 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 150/368 (40%), Positives = 232/368 (63%), Gaps = 10/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P+V+ AV D GY P+ IQ TIP +L DV G+AQTGTGKTA+F +P+L+ Sbjct: 15 FADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPILSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ R + L+L PTRELA QVA+ F +YG + + V + GG + Q L+RG Sbjct: 75 IDPNS---RATQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSSYGPQMAGLKRG 131 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A V++ TPGR++DH +G L +++++ +V+DEAD ML MGF ++ I S P +Q L Sbjct: 132 AQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERILSDTPEYKQVAL 191 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++K+++ +L +P + V + + TAE I ++ Y +K L +LL+++ Sbjct: 192 FSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQV--SYPRKMDALTRLLETE 249 Query: 243 --DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M I+F K+ + L +GF+ AI+G+I Q R + +S K+G+I ++V Sbjct: 250 QGDGM---IVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDILV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV NFD+P+ E+Y+HRIGRTGRAGR G A V + +++I Sbjct: 307 ATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSI 366 Query: 361 EKLIEKKV 368 E++ +K+ Sbjct: 367 ERVTRQKL 374 >gi|194334361|ref|YP_002016221.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194312179|gb|ACF46574.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii DSM 271] Length = 418 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 156/385 (40%), Positives = 237/385 (61%), Gaps = 8/385 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L + + A+ + GY PTPIQ + IP++L+ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MGFSSLNIIDPIARALREEGYATPTPIQAEAIPVILEGSDLLGCAQTGTGKTAAFAIPLL 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + R R L++ PTRELA Q+ ++F+ YG++ LT ++ GG+ Q Sbjct: 61 QLLSERNTYEKKRKIRALVVTPTRELAIQIGESFKAYGRHTGLTNRVIFGGVNQNPQAAS 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+++ TPGR+LD +G L + ++EILV+DEADRMLDMGFI I+ I + +P + Sbjct: 121 LRNGVDIVVATPGRLLDLMGQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPEKK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+ +++ L NP ++ V SST ETI+ + K LL L Sbjct: 181 QSLFFSATMPSEIVRLAGTILHNPAKVSVTPVSSTVETIQQQVY--FVDKGNKNRLLVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q ++K ++F K + L K + AIHGN Q +R + L+NFK+ + ++ Sbjct: 239 LKDQ-SIKTALVFTRTKHGADKVVKFLLKHDITAEAIHGNKGQNARQRALNNFKKQSTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ + +V NFD+ N AE Y+HRIGRTGRAG G A + E+ ++ Sbjct: 298 LVATDIAARGIDVDALAYVINFDMSNMAETYVHRIGRTGRAGAEGTAISFCDAEEKAYLC 357 Query: 359 AIEKLIEKKVDWLNGD---LSSLNP 380 +EKLI KK+ ++ L+ LNP Sbjct: 358 DVEKLIAKKIPVIDRHPFPLTDLNP 382 >gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459] gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 1816] gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 220] Length = 517 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 4 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 64 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++++E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 358 TTKKRMQPLQA 368 >gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262] gi|217965039|ref|YP_002350717.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Listeria monocytogenes HCC23] gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071] gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262] gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Listeria monocytogenes HCC23] gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071] Length = 516 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 4 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 64 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++++E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 121 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 181 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 357 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 358 TTKKRMQPLQA 368 >gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB] Length = 606 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 144/361 (39%), Positives = 227/361 (62%), Gaps = 6/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ + GY P+PIQ + IP++L+ HD+ G+AQTGTGKTA+F LP++ Sbjct: 8 FADLGLSETLLQTLTQIGYETPSPIQAQCIPVLLEGHDLIGMAQTGTGKTAAFALPLM-- 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 E+ ++ P+ LIL PTRELA QVA+ + Y KN V + GG + Q K+L R Sbjct: 66 -EQIDVKLTKPQALILTPTRELAIQVAEALQTYAKNLPGFHVLPIYGGQSYTIQLKQLSR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L +++++ +V+DEAD ML MGFI ++ I P QT Sbjct: 125 GAHVIVGTPGRVMDHLERKTLNLDHLKTMVLDEADEMLRMGFIDDVEWILERTPAQHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V++ +L P+ I++ + ++T I + + K L ++L+ Sbjct: 185 LFSATMPEQIRRVAQKYLVEPREIKIKSATATVAAIRQVYWQVSGMH--KLDALTRILEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ IIF K V L L +G++ A++G+++Q+ R +++ K G + +++A Sbjct: 243 EEDFDAAIIFVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLKSGALDIVIA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+P V HV N+D+P E Y+HRIGRTGRAGR G A VA +I+ + IE Sbjct: 303 TDVAARGIDVPRVSHVVNYDIPYDTEAYVHRIGRTGRAGRTGNAILFVAPREIRMLRTIE 362 Query: 362 K 362 + Sbjct: 363 R 363 >gi|326791603|ref|YP_004309424.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427] gi|326542367|gb|ADZ84226.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM 5427] Length = 477 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 231/370 (62%), Gaps = 10/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + GL ++ A G+ KPTP+Q + IP VL++ D+ +QTG+GKTA+F +P+ Sbjct: 1 MSFKNYGLEKSLLKAATLLGFNKPTPVQERVIPEVLRKQDLIVQSQTGSGKTAAFAIPIC 60 Query: 61 --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 I E+ + P+ L+L PTRELA QV ++F + G+ + L G PFE Q K+ Sbjct: 61 QEVIWEENK-----PQALVLTPTRELAIQVKEDFFQIGRFKRIKAVGLYGKAPFEVQQKE 115 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L + V++ TPGR+LDH RG L ++I LVIDEAD ML MGFI +++I + +P R Sbjct: 116 LSQKTHVVVGTPGRVLDHLERGTLEASHISYLVIDEADEMLRMGFIDQVESIIAALPLNR 175 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 TLLFSATM +Q++ E +L+ PK I + T S IE + T+ Q K A+L+ + Sbjct: 176 VTLLFSATMAPHIQQLCEKYLRTPKTIHITTDLSKPNNIEEIGIETHEQ--TKLAVLEAV 233 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++ IIFCN+K+ V + L + V IHG+++Q+ R ++ +F++G + Sbjct: 234 TIVENP-ESCIIFCNRKERVEMVWKRLNDLNYGVGKIHGDMEQKQRFAVMEDFRKGRFRY 292 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NFDVP +AENY+HR+GRTGRAGR GK F + ED +++ Sbjct: 293 LVATDVAARGIDIDHITHVINFDVPEQAENYVHRMGRTGRAGRSGKTFIFIQPEDKRNLA 352 Query: 359 AIEKLIEKKV 368 IE +K+ Sbjct: 353 VIESYTMRKI 362 >gi|163859073|ref|YP_001633371.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804] gi|163262801|emb|CAP45104.1| putative ATP-dependent RNA helicase [Bordetella petrii] Length = 584 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 154/372 (41%), Positives = 228/372 (61%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ AG+ PTP+Q IP L HD+ +QTG+GKTA+F+LP L Sbjct: 1 MSFETLGLAPTLLSALQAAGFSAPTPVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPAL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117 + + G V + + L+L PTRELA QV + YG+N L A ++GG+P+ AQ K Sbjct: 61 NRIAGQPGNKGVGV-QVLVLTPTRELALQVTEATGSYGRNLPGLRTATVVGGMPYGAQLK 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L R DVL+ TPGR++DH G++ +N + LV+DEADRMLDMGFI I+ I +P Sbjct: 120 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPQE 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQ 236 RQTLLFSAT+ + K++ ++ P+RIE+ I + YA S K LL Sbjct: 180 RQTLLFSATLDGTVAKLAARMMREPQRIEMAGQKEKHTNITQSLL--YADDASHKMQLLD 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ + I+F K+ +L L QGF+ A+HG+++QR R + L+ + G + Sbjct: 238 HVLRDA-KLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLTQLQRGQL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARG+D+ + H NFD+P +AE+Y+HRIGRTGRAGR G+A+TL + Sbjct: 297 RILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRDGQAYTLATHAERHK 356 Query: 357 IDAIEKLIEKKV 368 + IE I + + Sbjct: 357 VRRIEHYIGQSI 368 >gi|119468940|ref|ZP_01611965.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales bacterium TW-7] gi|119447592|gb|EAW28859.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales bacterium TW-7] Length = 415 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 175/403 (43%), Positives = 245/403 (60%), Gaps = 19/403 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P ++ A+ Y PT IQIKTIP +L +DV G AQTGTGKTA+FVLP+L Sbjct: 6 FSSLNLDPLLLTAIEQNNYTTPTAIQIKTIPPILAGNDVMGSAQTGTGKTAAFVLPLLHK 65 Query: 63 L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L E G ARV +IL PTRELA QV +FEKY + N+ AL GG Q Sbjct: 66 LLNTPKKDEPGIARV-----VILTPTRELAQQVFASFEKYAQGSNVQGALAYGGASIGPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L + A V++ TPGR+LDH +G +++++++ LV DEADRMLDMGFI I+ I +P Sbjct: 121 IKAL-KTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIP 179 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT D + +SE L+NP+ IEV+ +S A +E A +K L+ Sbjct: 180 GDRQTLLFSATFDDSVFGLSEKLLKNPELIEVDKRNSAAVEVEQIIYAV--DEDRKRELV 237 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ ++ + +IF K+ L + K G +IHG+ Q +R + L NFKEGT Sbjct: 238 SHMIGMKN-WRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGT 296 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +++VA+D+AARGLDIP + +V NF++P AE+Y+HRIGRTGRAG G A +LV+ ++ Sbjct: 297 TRVLVATDVAARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQW 356 Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKN 396 ++ IE L++ ++ WL G LN K + N ARK+ Sbjct: 357 LLEEIEVLLDTRLAPQWLEGYEPDLNKA-PKDNRKNTNKARKD 398 >gi|156977147|ref|YP_001448053.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116] gi|156528741|gb|ABU73826.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116] Length = 421 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 161/412 (39%), Positives = 254/412 (61%), Gaps = 15/412 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++FADLG+ ++V + V PTP+Q K+IP VL+ D+ AQTGTGKTA+F LP++ Sbjct: 7 VNFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPPVLEGKDLLAAAQTGTGKTAAFGLPII 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ + R P+ LIL PTRELA QV DN +Y N +L + + GG Q KKLE Sbjct: 67 QSVQQ-KKRNGAPQALILVPTRELAQQVMDNLTQYAANTDLKIVCVYGGTSIGVQKKKLE 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+LI TPGR+LDH G +++ ILV+DEADRMLDMGF P +Q I +P +QT Sbjct: 126 EGADILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQT 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT ++ ++ + +P +EV+ ++TAET++ +K LL L+ Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++F K+ L L+ G +I+G+ Q +R + L FK G ++ ++ Sbjct: 244 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKAGKVRALI 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ V NFD+P +AE+Y+HRIGRTGRA + G A +L+++++ + AI Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRARKSGLAVSLMSRDEEYLLTAI 362 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 E L+++++ +WL G SL +E+++ ++ R+ KS ++RK Sbjct: 363 ENLLDQRLPQEWLEGFEPSL---IEEVEPERNGGGRR------KSRSSEKRK 405 >gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4] Length = 499 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 154/379 (40%), Positives = 237/379 (62%), Gaps = 13/379 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L LSP ++ ++ G+ + TPIQ TIPL L+ D+ G AQTGTGKTA+F +P++ Sbjct: 4 FSELNLSPSMLKSINRMGFEEATPIQAGTIPLSLEGKDIIGQAQTGTGKTAAFGIPLVEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ V+ LI+ PTRELA QV++ K G + + V + GG Q + +++G Sbjct: 64 IDTKNTNVQ---GLIIAPTRELAIQVSEELYKVGYDKRVRVLAVYGGQDINRQIRAMKKG 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR L ++ + LV+DEAD ML+MGFI I++I VP RQTLL Sbjct: 121 PHIIVGTPGRLLDHINRRTLKLDQVHTLVLDEADEMLNMGFIDDIESILKNVPEGRQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++K++ENF+ NP+ ++V + T I+ FV AQ +K +L +LL +Q Sbjct: 181 FSATMPGPIRKIAENFMTNPETVKVKSKEMTVSLIDQYFVK--AQEREKFDILARLLDTQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G+ IHG++ Q R +L FKEG I+++VA+ Sbjct: 239 -SPELAIVFGRTKRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 298 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEQ 357 Query: 363 LIEKKVDWLNGDLSSLNPP 381 K+ ++ + PP Sbjct: 358 TTNKR-------MTPMRPP 369 >gi|108761880|ref|YP_632259.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622] gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622] Length = 501 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 223/370 (60%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L ++ AV GY PTPIQ K IP L DV G+AQTGTGKTA+F LP+L Sbjct: 1 MTFDDLQLHDTLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPIL 60 Query: 61 TILE-KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K A P R L+L PTRELA QV D+F YGK L A++ GG+ Q + Sbjct: 61 QRLSAKAPAGGARPVRCLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQT 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G DVL+ TPGR+LD +G + + ++E+ V+DEADRMLDMGFI ++ + +P R Sbjct: 121 LRNGVDVLVATPGRLLDLMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT+ ++ ++ + L +P R+EV SSTAET+ + + +K LL L Sbjct: 181 QTLFFSATLPPDIVDLARSILTDPIRVEVTPASSTAETVSQQVY--FVEREQKRGLLTHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + + ++F K + LE G S AIHGN Q +R + L F+ GT+++ Sbjct: 239 LK-EGNIHRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + +V N+D+PN E Y+HRIGRTGRAG G A + E+ ++ Sbjct: 298 LVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLR 357 Query: 359 AIEKLIEKKV 368 IE+ I + V Sbjct: 358 DIERTIRRNV 367 >gi|227357070|ref|ZP_03841440.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus mirabilis ATCC 29906] gi|227162762|gb|EEI47725.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus mirabilis ATCC 29906] Length = 611 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 236/369 (63%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS ++ A+ D GY KP+PIQ + IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 MTFADLGLSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L++ ++ P+ L+L PTRELA QVA+ E + K+ + V L GG ++ Q + L Sbjct: 67 HNLDES---LKAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G V++ TPGR+LDH NRG L ++ ++ LV+DEAD ML MGFI ++NI S +P Q Sbjct: 124 RQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+ +PK + + + +T I + TY ++K L + L Sbjct: 184 TALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYG--ARKNEALIRFL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + +LE+ G++ A++G+++Q R + L K G + ++ Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + Sbjct: 301 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRN 360 Query: 360 IEKLIEKKV 368 IE+ ++ + Sbjct: 361 IERTMKMSI 369 >gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL S4-120] gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99] gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes FSL F2-208] gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL S4-120] Length = 518 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 6 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 66 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++++E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 360 TTKKRMQPLQA 370 >gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b str. F2365] gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b H7858] gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064] gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175] gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503] gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194] gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262] gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017] gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b str. F2365] gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b H7858] gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503] gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262] gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194] gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017] gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A] Length = 519 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 6 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 66 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++++E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 360 TTKKRMQPLQA 370 >gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL S4-378] Length = 518 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 6 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 66 IDQKNNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++++E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 360 TTKKRMQPLQA 370 >gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261] gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261] Length = 521 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] Length = 524 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 151/367 (41%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL P+++ ++ G+ +P+PIQ +TIP+ L D+ G++QTG+GKTA+F LP L Sbjct: 6 FADLGLRPELLESIQRLGFEQPSPIQARTIPVALDGSDIVGLSQTGSGKTAAFALPALHG 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLER 121 L+ + + L+L PTRELA QV + + AL + GG P + Q + L++ Sbjct: 66 LDLSN---KATQVLVLCPTRELAVQVCEEIHRLSTAMPKLQALPVYGGTPIDRQIRALKK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH R L ++I + ++DEADRMLDMGF ++ I +P RQTL Sbjct: 123 GVHVVVGTPGRVMDHMKRKTLKTDSIRLCILDEADRMLDMGFREDMEIILDAIPQERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM +Q + + F + K+IE+ + T E+IE + + K ++ +LL Sbjct: 183 FFSATMNRGVQGLIKAFSHDAKQIEIEQKTLTVESIEQVYYEV--RNRSKVEVMCRLLDM 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T + GI+FCN K+ V ++C +L +G++ IHG+I Q R K++ F++ I+++VA Sbjct: 241 EPTQR-GIVFCNTKQMVEDVCEALNARGYTADRIHGDISQGIREKVIRRFRDNAIEILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI D+ VFN+D+P E+Y+HRIGRTGRAGR GK+ T V DI+ ++AIE Sbjct: 300 TDVAARGLDIDDIELVFNYDLPYDPEDYVHRIGRTGRAGRSGKSITFVYGRDIRRLEAIE 359 Query: 362 KLIEKKV 368 + I + + Sbjct: 360 RYIRQSI 366 >gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68] gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6] gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF] gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039] gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071] gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636] gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679] gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68] gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6] gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF] gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071] gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636] gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679] gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039] Length = 503 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 156/384 (40%), Positives = 237/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LSP+++ +V AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R ++ L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 61 EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + ++ LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++NP +++ TA+ I+ +V A+ +K ++ +L Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVR--AKEYEKFDIMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ +++L PP EK Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371 >gi|197287236|ref|YP_002153108.1| ATP-dependent RNA helicase DeaD [Proteus mirabilis HI4320] gi|194684723|emb|CAR46715.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus mirabilis HI4320] Length = 616 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 236/369 (63%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS ++ A+ D GY KP+PIQ + IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 12 MTFADLGLSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLL 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L++ ++ P+ L+L PTRELA QVA+ E + K+ + V L GG ++ Q + L Sbjct: 72 HNLDES---LKAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRAL 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G V++ TPGR+LDH NRG L ++ ++ LV+DEAD ML MGFI ++NI S +P Q Sbjct: 129 RQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQ 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+ +PK + + + +T I + TY ++K L + L Sbjct: 189 TALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYG--ARKNEALIRFL 246 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + +LE+ G++ A++G+++Q R + L K G + ++ Sbjct: 247 EAED-FDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDIL 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + Sbjct: 306 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRN 365 Query: 360 IEKLIEKKV 368 IE+ ++ + Sbjct: 366 IERTMKMSI 374 >gi|323492253|ref|ZP_08097411.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG 20546] gi|323313566|gb|EGA66672.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG 20546] Length = 427 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 158/370 (42%), Positives = 225/370 (60%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA SP++V A+ + GY K TP+Q K IPL + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFASQNFSPEIVKALTECGYEKLTPVQQKAIPLARRGHDILANAQTGTGKTAAFALPIV 60 Query: 61 -TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL+ ++ R R +IL PTRELA QVA N + Y K ++ + GG Q K Sbjct: 61 QNILDSDKSANRHQTRAVILTPTRELAEQVASNIQDYTKYTDIKTVAIFGGKKMATQQKA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G DVL+ TPGR+++H + + N+E LV DEADRMLDMGFI I+ I S V Sbjct: 121 LEAGVDVLVATPGRLIEHIELNNVSLANLEFLVFDEADRMLDMGFIASIEKIMSGVTTKP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT + ++ K++ L+ PKR+ V + TA+TI H V + +K LL +L Sbjct: 181 QTMLFSATFSTQMNKLASEILRQPKRVSVARENVTADTIAH--VVYPVEQERKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + K ++F N K+ L L+ G HG+ Q +R + L FK G ++ Sbjct: 239 I-GRKNWKQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALEEFKTGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 M+A+D+AARGLDI ++ HV NFD+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 298 MIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNREEELTLQ 357 Query: 359 AIEKLIEKKV 368 +E LI +++ Sbjct: 358 QVETLIGQRI 367 >gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae D-4968] gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150] gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae D-4968] gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150] Length = 421 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 167/428 (39%), Positives = 247/428 (57%), Gaps = 21/428 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ ++ + GY +P+ IQI+ IP +L DV AQTGTGKTASFVLP+L Sbjct: 1 MSFKSLGLIEPLLQSIDELGYKEPSSIQIQAIPKILSGKDVLASAQTGTGKTASFVLPIL 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L K RA RTLIL PTRELA+QV +N +YG+ + ++ GG+ Q KL Sbjct: 61 QMLSTKPRANSNRTRTLILTPTRELASQVHENIIQYGRYLSFRSTVVFGGVKINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G ++L+ TPGR+LD +N+ + + ++ LV+DEADRMLDMGFI ++ I + +P RQ Sbjct: 121 RSGVEILVATPGRLLDLYNQRAIQFDQVDTLVLDEADRMLDMGFIHDMKRIINYLPKNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT TDE++ + L P I+V ++T I+ ++K ALL L+ Sbjct: 181 NLMFSATFTDEIRSFVKTILNQPIEIDVTPRNTTVVKIKQTVHP--VDKNRKAALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ ++F K L L + AIHGN Q R K L++FK G + ++ Sbjct: 239 H-RNKWNQALVFSKTKHGANKLVKQLAEAQIHAAAIHGNKSQSQRTKALNDFKSGELHIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+P AE+Y+HRIGRTGRAG G A +LV+ +++ + + Sbjct: 298 VATDIAARGIDIDQLPCVVNFDLPQVAEDYVHRIGRTGRAGAIGLAISLVSADEVNQLQS 357 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 IEKLI+ K+D + ++ P QHN +PQ + RK + +K+ Sbjct: 358 IEKLIQHKLDRI--EIEDFEP--------QHN-------VPQTTISSTTRKYSQIKKKTT 400 Query: 420 IPLKESEK 427 P + K Sbjct: 401 SPYAKPHK 408 >gi|54296291|ref|YP_122660.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris] gi|53750076|emb|CAH11468.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris] Length = 414 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 162/373 (43%), Positives = 228/373 (61%), Gaps = 10/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L + AV + GY PT IQ+K IPL+L HD+ G AQTGTGKTASFVLP Sbjct: 1 MSFKQLALIEPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLP-- 58 Query: 61 TILEKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 IL+K + + R LIL PTRELA Q ++ +YGK L A++ GG+ Q Sbjct: 59 -ILQKASQQTQTSRNRAKVLILTPTRELAIQAHESIIQYGKYLTLRSAVIYGGVKSHNQI 117 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K+L+ G ++L+ TPGR+LD + +G + + I+ LV+DEADRMLDMGFI I+ I L+P Sbjct: 118 KQLDSGLEILVATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT T E++ ++ N L I++ ++ +TI+ + + K ALL Sbjct: 178 KRQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDGNH--KLALLS 235 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL ++ ++F K L L + AIHGN Q R K L++FK G + Sbjct: 236 HLLH-KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKV 294 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q ++A+D+AARG+DI + V NFD+P+ E+Y+HRIGRTGRAG G A +LV+ E+IK Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354 Query: 357 IDAIEKLIEKKVD 369 + +IEKLI +K++ Sbjct: 355 LLSIEKLINQKLE 367 >gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501] gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501] Length = 503 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 156/384 (40%), Positives = 237/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LSP+++ +V AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R ++ L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 61 EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + ++ LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++NP +++ TA+ I+ +V A+ +K ++ +L Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAKEVTADLIDQYYVR--AKEYEKFDIMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ +++L PP EK Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371 >gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM 519] gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii] Length = 515 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 157/366 (42%), Positives = 228/366 (62%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL +++ AVLD G+ PTPIQ + IPL +Q D+ G AQTGTGKTA+F +P+L+ Sbjct: 4 FNELGLQEELLKAVLDMGFDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +EKG V+ LIL PTRELA QV+ + K N+ + GG Q + L++ Sbjct: 64 IEKGNKAVQ---ALILAPTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGLKKN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR +DH R + + NI+ +++DEAD ML MGFI I+ I VP RQTLL Sbjct: 121 PQIVVATPGRFMDHMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPSERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +Q VS+ F+++P+ + V + T +TIE ++ + K AL + L Sbjct: 181 FSATMPKRIQSVSQKFMKSPQTVAVKNKTMTVDTIEQRYL-DLKERDKFDALCR--LMDI 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIF K+ V L +L +G+ V IHG++ Q R K+L FK G+I+++VA+ Sbjct: 238 HCPELSIIFGRTKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HVFNFD+P E+Y+HRIGRTGRAG+ G +FT V + ++++ IE Sbjct: 298 DVAARGLDISGVSHVFNFDLPQDPESYVHRIGRTGRAGQKGISFTFVTPREREYLELIED 357 Query: 363 LIEKKV 368 + K+ Sbjct: 358 TTKSKM 363 >gi|149377730|ref|ZP_01895465.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893] gi|149358015|gb|EDM46502.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893] Length = 503 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 172/466 (36%), Positives = 258/466 (55%), Gaps = 39/466 (8%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL P V+ AV GY KP+PIQ +TIP +L + G+AQTGTGKTA+F LP+L Sbjct: 4 LSFADLGLDPAVLEAVAAVGYEKPSPIQAQTIPALLAGKHLLGVAQTGTGKTAAFALPLL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ A V P+ L+L PTRELA QVA+ F Y + N V + GG F Q K L Sbjct: 64 SRID---ASVMAPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFFPQIKGL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA V++ TPGR+LDH +G L +++++ LV+DEAD ML MGFI ++ I + P Q Sbjct: 121 RRGAQVIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPDNCQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++KV++ +L++ +++ + + T E I + YA+ +K L ++L Sbjct: 181 RALFSATMPPQIKKVAQTYLRDATEVKIESETRTVERISQFVLPVYAE--RKLDALTRIL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + IIF K L L +G +V ++G+++QR R + + + K G ++ Sbjct: 239 EVE-PVDGTIIFVRTKAETTLLAEKLSARGHAVAPLNGDLNQRQREQTVEDLKRGKKDII 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+P + HV N+DVP E YIHR+GRTGRAGR GKA LV Sbjct: 298 VATDVAARGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTP-------- 349 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 ++ WL + N P+E ++ N +K R++ + SQ Sbjct: 350 ------RERSWLRTLERATNSPMESYELPSPNALKKM------------REEQFESQ--L 389 Query: 420 IPLKESEKISK----LQQDIQENDADSLGFRGNMPAFMLPKNRGKL 461 + E K+ K L + + ND D G + ++ G L Sbjct: 390 LGFAEDGKLGKAMALLDEIAERNDMDIAMVAGALACYLEASQPGSL 435 >gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC 700641] gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC 700641] Length = 524 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +++IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH 391-98] Length = 511 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 155/369 (42%), Positives = 232/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ +V G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L Sbjct: 16 FRELGLSDSLLQSVEKMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK M + +++ PTRELA QV + K G++ + + + GG Q + L++ Sbjct: 74 -EKVDTNKEMVQGIVIAPTRELAIQVGEELYKIGQHKRVRILPIYGGQDINRQIRALKKR 132 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLL Sbjct: 133 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 192 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + +++++E F+ P+ I+V T I+ ++ Q KK +L +LL Q Sbjct: 193 FSATMPEPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ 250 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM +L FKEG+I+++VA+ Sbjct: 251 -SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 309 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A V ++ + IE+ Sbjct: 310 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAMLFVTPREMGQLKNIER 369 Query: 363 LIEKKVDWL 371 ++K+D + Sbjct: 370 TTKRKMDRM 378 >gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9) [Streptococcus sp. C300] gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9) [Streptococcus sp. C300] Length = 449 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/372 (40%), Positives = 234/372 (62%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS +++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWLN 372 E L +K++ L Sbjct: 355 ENLTKKRMKGLK 366 >gi|330719371|ref|ZP_08313971.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537] Length = 551 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS +++ ++ + GYV+ TPIQ KTIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFNELGLSQELLQSIAEHGYVEATPIQEKTIPLTLVGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ LI+ PTRELA Q AD +K G++ ++ V ++ GG Q + L+ Sbjct: 61 EHIDLNNKNIQ---ALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGADIRRQIQNLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+LDH NR + ++++ LV+DEAD ML+MGF+ I+ I P TRQT Sbjct: 118 SHPQILVGTPGRLLDHTNRKTVKLDHVNTLVLDEADEMLNMGFLDDIEAIIEKTPATRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F+ NP+ I++ T + ++ FV + ++K + ++ Sbjct: 178 LLFSATMPPAIKLIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RVRENEKFDTMTRIFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q K I+F K+ V L LE +G+ +HG++ Q+ R ++L+ FK I ++V Sbjct: 236 VQ-APKLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HV+NFD+P E+Y+HRIGRTGRAG G + T VA ++ ++ A+ Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMDYLRAV 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMTPL 365 >gi|227432573|ref|ZP_03914553.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351656|gb|EEJ41902.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 536 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F++LGLS ++ A+ GYV+ TPIQ KTIPL L DV G AQTGTGKTA+F LP+L Sbjct: 13 LKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPIL 72 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ LI+ PTRELA Q A+ +K G++ + V ++ GG Q + L+ Sbjct: 73 EHIDLNNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLK 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+LDH NR + ++++ LV+DEAD ML+MGF+ I+ I S P RQT Sbjct: 130 SHPQILVGTPGRLLDHINRKTVKIDSVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+ NP+ I++ T + ++ FV + ++K + ++ Sbjct: 190 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RMRENEKFDTMTRIFD 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q K I+F K+ V L LE +G+ +HG++ Q+ R ++L+ FK I ++V Sbjct: 248 VQ-APKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HV+NFD+P E+Y+HRIGRTGRAG G + T VA ++ ++ A+ Sbjct: 307 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAV 366 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 367 EDLTKKRMTPL 377 >gi|119470813|ref|ZP_01613424.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales bacterium TW-7] gi|119446040|gb|EAW27319.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales bacterium TW-7] Length = 600 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 147/348 (42%), Positives = 222/348 (63%), Gaps = 8/348 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LSP ++ AV + GY P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L Sbjct: 7 FESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNN 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ FE+Y K + V L GG + Q L R Sbjct: 67 IDPS---VKQPQILVLTPTRELAIQVAEAFEQYAKGTRGVEVLALYGGQSYSIQLSALRR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH NRG + + ++ LV+DEAD ML MGFI ++NI P +QT Sbjct: 124 GAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQTC 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++Q +S ++ NP+++ ++ +ST ++E F A K A+++ L Sbjct: 184 LFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVF--WNASVHKNKAIVRFLEAE 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + I+F + + V L LE++GFS ++G+++Q++R + + K G + +++A Sbjct: 242 Q--YEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +D+AARGLD+ + V N+D+P +E Y+HRIGRTGRAGR GKA V Sbjct: 300 TDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFV 347 >gi|90412948|ref|ZP_01220947.1| putative ATP-dependent RNA helicase, DEAD box family protein [Photobacterium profundum 3TCK] gi|90326127|gb|EAS42561.1| putative ATP-dependent RNA helicase, DEAD box family protein [Photobacterium profundum 3TCK] Length = 422 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 165/384 (42%), Positives = 237/384 (61%), Gaps = 14/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++V V + G+ PTPIQ + IP VL D+ AQTGTGKTA+F LPM+ Sbjct: 1 MSFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMI 60 Query: 61 TIL------EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111 L E ++ P R L+L PTRELA QV D+ Y KN ++ VA+ GG Sbjct: 61 QRLLASQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTS 120 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 Q K L+ G D+LI TPGR+LDH G + ++ IE LV+DEADRMLDMGF+ I+ I Sbjct: 121 MGVQVKALKSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIM 180 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 +P RQTLLFSAT +++++K++ + L +PK IEV + AE++ +K Sbjct: 181 QRMPRKRQTLLFSATFSNQVKKLAYDILADPKLIEVTPENIAAESVTQMVYPV--DKHRK 238 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L+ S++ +IF K+ L L G +I+G+ Q +R + LS+F Sbjct: 239 RELLSYLIGSRN-WNQVLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDF 297 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 KEG ++ MVA+D+AARGLDI +G+V NFD+P +AE+Y+HRIGRTGRAG G A +L++ Sbjct: 298 KEGKVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSI 357 Query: 352 EDIKHIDAIEKLIEKKV--DWLNG 373 ++ + AIE+L++ ++ +WL G Sbjct: 358 DEEWALRAIEELLDTRLPQEWLEG 381 >gi|118586395|ref|ZP_01543844.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163] gi|118433182|gb|EAV39899.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163] Length = 509 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 156/383 (40%), Positives = 237/383 (61%), Gaps = 14/383 (3%) Query: 13 VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72 + AV GY + TPIQ KTIPL++Q DV G AQTGTGKTA+F LP+L ++ +++ Sbjct: 1 MSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQ- 59 Query: 73 PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132 L++ PTRELA Q + K G + ++ ++ GG Q L+ +L+ TPGR Sbjct: 60 --ALVISPTRELAMQTEEELNKLGSDKHVKTQVIFGGYDIRRQIHALKEHPQILVGTPGR 117 Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192 ++DH NR + ++ LVIDEAD ML+MGF+ I+ I P RQTLLFSATM D+++ Sbjct: 118 LIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDIK 177 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 K+ F+++P+ + + + T + ++ V T +Y K A+ + Q + I+F Sbjct: 178 KIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTR-EYEKFDAMTRLFDVEQPEL--AIVFG 234 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 K+ V L +L+ +G+ IHG++DQ +RM+ L +FK+G +Q +VA+D+AARGLDI Sbjct: 235 RTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDIS 294 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372 V HV+N+DVP E+Y+HRIGRTGRAG HG + T V + +I ++ AIEKLI K+ Sbjct: 295 GVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEKLINKR----- 349 Query: 373 GDLSSLNPP-LEKIDIAQHNHAR 394 +++L PP E+ IA+ +A+ Sbjct: 350 --MAALKPPSAEEAHIARLKNAK 370 >gi|42521860|ref|NP_967240.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] gi|39574390|emb|CAE77894.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] Length = 505 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 155/368 (42%), Positives = 226/368 (61%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L + ++ +AGY PTPIQ+ IP++L+ HD+ GIAQTGTGKTA+F LP+L Sbjct: 6 FTDLPLIAPLQFSLKEAGYETPTPIQLAAIPVILEGHDLLGIAQTGTGKTAAFSLPILQN 65 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K ++ + PR LIL PTRELA Q+ +N E Y K+ N+ A++ GG+ Q + L+ Sbjct: 66 LSKHTRKIEPKSPRCLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNPQVRALQ 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR++D + L ++ +EI V+DEADRMLDMGF+ I+ I L+P R Sbjct: 126 GGVDILIATPGRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLPQKRHN 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+Q ++ L NPK++EV SSTAE +E + + +K LL +L+ Sbjct: 186 LFFSATMPHEIQTLANRILVNPKKVEVTPVSSTAEKVEQRVM--FVDKPQKLDLLLHILK 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ ++F K + L K G + IHG+ Q R + L FK G ++++V Sbjct: 244 D-ESLSKVLVFVQMKYGANRVVDRLTKAGVAAAGIHGDKSQNQRQRALEEFKNGDVRVLV 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV N ++P+ E+Y+HRIGRT RAG G + + E+ + AI Sbjct: 303 ATDIAARGIDIDGITHVINLELPHIPESYVHRIGRTARAGATGISISFCTAEERSFLFAI 362 Query: 361 EKLIEKKV 368 EK KV Sbjct: 363 EKTTRTKV 370 >gi|253996647|ref|YP_003048711.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera mobilis JLW8] gi|253983326|gb|ACT48184.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8] Length = 576 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/372 (40%), Positives = 231/372 (62%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L+P ++ A+ + GY PTPIQ + IP+V++ HD+ AQTGTGKTA F+LP L Sbjct: 1 MSFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPAL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +R R PR L+L PTRELAAQV + KYGK ++GG+P+ QNK L Sbjct: 61 NLLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+LDH RG++ ++ +++L++DEADRMLDMGF+P ++ I + RQ Sbjct: 121 SQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237 TLLFSAT+ ++ ++++ L+NPK ++V IE FV +K LL+ Sbjct: 181 TLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNK---LLEH 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + + + IIF + K++ L L G A+HG++ Q +R + L+ + G ++ Sbjct: 238 LLIAPEVNQT-IIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVK 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ + HV N+D+P AE+Y+HRIGRTGRA G A + + D + Sbjct: 297 VLVATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLL 356 Query: 358 DAIEKLIEKKVD 369 IE+ +++ Sbjct: 357 RKIEQYTGNRLE 368 >gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321] gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321] Length = 524 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP +RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|84684138|ref|ZP_01012040.1| hypothetical protein 1099457000262_RB2654_16856 [Maritimibacter alkaliphilus HTCC2654] gi|84667891|gb|EAQ14359.1| hypothetical protein RB2654_16856 [Rhodobacterales bacterium HTCC2654] Length = 439 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 161/384 (41%), Positives = 234/384 (60%), Gaps = 9/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL PK++ AV AGY P+PIQ++ IP L DV G+AQTGTGKTA+F LP++ Sbjct: 4 FNDLGLDPKLLAAVKAAGYQTPSPIQVQAIPHALAGTDVLGLAQTGTGKTAAFGLPLVQQ 63 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G + R P R L+L PTREL Q+ADN Y K ++ V ++GG Q + L Sbjct: 64 LLGGHDK-REPKGVRALVLAPTRELVNQIADNLIAYVKGTHIKVNTVVGGKSINKQVQIL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR++D +R + ++ LV+DEAD+MLDMGFI ++ I + RQ Sbjct: 123 AKGTDILVATPGRLIDLMDRKAVRLDTATFLVLDEADQMLDMGFIHALRRIAPELGTPRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQQL 238 T+LFSATM +++++S +L +P +++V P A+ I +AQ K +L+ Sbjct: 183 TMLFSATMPKQMEELSRAYLTDPVKVQVAAPGKAADKITQGV--HWAQDKGDKIDILKAY 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L S + ++F K L L GF +IHGN Q R + L+ F++G ++ Sbjct: 241 L-SDEPDGLSLVFARTKHGAERLMKQLCASGFDAVSIHGNKSQGQRDRALAAFRDGKARV 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DIP V HVFNFD+PN AENY+HRIGRT RAG G A +LV +++ ++ Sbjct: 300 LVATDVAARGIDIPGVSHVFNFDLPNVAENYVHRIGRTARAGADGDAISLVTGDELGYLR 359 Query: 359 AIEKLIEKKVDWLNGDL-SSLNPP 381 I+KL++ + L G+ L PP Sbjct: 360 DIQKLMKIDIPVLGGNRPEELAPP 383 >gi|223937377|ref|ZP_03629282.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514] gi|223893928|gb|EEF60384.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514] Length = 437 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 222/370 (60%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ AV +AGY +PTPIQ IP ++ HD+ GIAQTGTGKTA+FVLP+L Sbjct: 1 MSFRTLGLDANILKAVQEAGYTEPTPIQAAAIPQIIAGHDLIGIAQTGTGKTAAFVLPIL 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K A R R L++ PTREL Q+ +N Y K+ L VA + GG+ Q + Sbjct: 61 AKLAGMKREANQRGIRALVVAPTRELVVQIEENVRAYSKHLPLKVATVFGGVGEHPQIQA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D++I TPGR+LD +R + I LV+DEADRMLDMGF+P I+ I +P R Sbjct: 121 LRSGVDMVIATPGRLLDLMDRRHGDFSGINFLVLDEADRMLDMGFLPSIRQIVKALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT++ E++ ++ F PK +++ S+ AET+ K ALL L Sbjct: 181 QTLLFSATLSREIEGLTHEFQHAPKTVQIGRRSNPAETVTQLVYEVPKHL--KPALLVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +M ++F K + + +LE +G +H N Q R++ L +FK G +++ Sbjct: 239 LRD-PSMDMVLVFSRMKHSADRIARNLENKGIKTATLHSNRSQNQRLRALKDFKSGAVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ + HV N+D P AE+Y+HRIGRTGRA G A + V ED + Sbjct: 298 LVATDIAARGIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFVTSEDHGTLR 357 Query: 359 AIEKLIEKKV 368 ++E+ I + + Sbjct: 358 SLERFIGRGI 367 >gi|330808371|ref|YP_004352833.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376479|gb|AEA67829.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 557 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L+P ++ AV GY +P+ IQ ++IP+++ HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPAK---REPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++P+ +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|104780746|ref|YP_607244.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48] gi|95109733|emb|CAK14434.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas entomophila L48] Length = 562 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L+P +V AVL GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALELNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K + V + GG P Q + + Sbjct: 68 IDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + +++ ++ LV+DEAD ML +GF+ ++ I +P +RQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ PK +++ + + T I+ + +A +K + +LL+ Sbjct: 185 LFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHA--DQKIPAVLRLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ I F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 EE-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sanguinis ATCC 49296] gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sanguinis ATCC 49296] Length = 525 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS +++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T E ++ ++ Q +K + L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTHLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|121599633|ref|YP_993994.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei SAVP1] gi|121228443|gb|ABM50961.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei SAVP1] Length = 473 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 157/358 (43%), Positives = 227/358 (63%), Gaps = 7/358 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----KGRARV 70 AV + GY +PTPIQ + IP VL D+ AQTGTGKTA F LP+L L + R+ Sbjct: 3 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENRSAR 62 Query: 71 RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130 R R LIL PTRELAAQV ++ Y K L ++ GG+ Q L+RG D+++ TP Sbjct: 63 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 122 Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190 GR+LDH + + +++++ILV+DEADRMLDMGFI I+ + + +P RQ LLFSAT +DE Sbjct: 123 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFSDE 182 Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250 ++ ++++ L +P IEV ++TAETI +K LL L++ + + ++ Sbjct: 183 IKSLADSLLDSPALIEVARRNTTAETIAQKIHPV--DRDRKRELLTHLIREHNWFQV-LV 239 Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310 F K L L K G S AIHGN Q +R + LS FK T+Q++VA+D+AARG+D Sbjct: 240 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGID 299 Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 I + HV NFD+PN E+Y+HRIGRTGRAG +G+A +LV ++ + + IE+LI++++ Sbjct: 300 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREI 357 >gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M334] gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M334] Length = 524 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/372 (40%), Positives = 234/372 (62%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIERAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP +RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWLN 372 E L +K++ L Sbjct: 355 ENLTKKRMKGLK 366 >gi|313202811|ref|YP_004041468.1| dead/deah box helicase domain protein [Paludibacter propionicigenes WB4] gi|312442127|gb|ADQ78483.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes WB4] Length = 451 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L ++ A+ GY +PTPIQ +IP+VL+ HD+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFDKLDLIEPILNALSHEGYTQPTPIQEISIPIVLKGHDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L+ + R PR LI+ PTRELA Q+ ++F YG+ NL ++ GG+P AQ Sbjct: 61 QLLQLNKGAERAPRKIKALIVTPTRELAIQIGESFAAYGRFMNLRHTVIFGGVPQGAQVG 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ G D+LI TPGR+LD +G + +N + I V+DEADRMLDMGFI ++ + ++P Sbjct: 121 ALKMGVDILIATPGRLLDLQTQGYVKLNELSIFVLDEADRMLDMGFIHDVKKLIKIIPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ+L FSATM + ++ ++ + L NP+ + V S+TAETI+ + K LL Sbjct: 181 RQSLFFSATMPESIRVLAGSILTNPEEVAVTPVSTTAETIQQEMY--FVDAVNKKDLLIH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LLQ + ++K ++F K + L K AIHGN Q +R L NFK+ T + Sbjct: 239 LLQDK-SIKTALVFTRTKHGADKVQRLLTKARIKAEAIHGNKSQNARQNALRNFKDRTTR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI D+ V N+++PN E Y+HRIGRTGRAG GKA + E+ +++ Sbjct: 298 VLVATDIAARGIDIDDLNLVINYEIPNIPETYVHRIGRTGRAGLDGKAVSFCDAEEHEYL 357 Query: 358 DAIEKLIEKKV 368 I+KLI ++ Sbjct: 358 RDIQKLISIQI 368 >gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M143] gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M143] Length = 520 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS +++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|330897234|gb|EGH28653.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 557 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L P ++ AV+ GY +P+ IQ ++IP+++ HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAAFELHPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P T+QT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETKQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase [Streptococcus mutans UA159] gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus mutans UA159] Length = 517 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 236/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ ++ AV G+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 NKIDVTNNVVQ---ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N++E L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T + ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +G+ IHG++DQ R+++L +FK + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+HG++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 EKL +K++ + Sbjct: 355 EKLTKKRMKGM 365 >gi|304392205|ref|ZP_07374147.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130] gi|303296434|gb|EFL90792.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130] Length = 536 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 164/380 (43%), Positives = 234/380 (61%), Gaps = 8/380 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+ LGLS +VV + G PTPIQ IPLVL+ DV G+AQTGTGKTA+F LP++ Sbjct: 36 FSALGLSKRVVRPLAVLGLKDPTPIQTNAIPLVLEGRDVMGLAQTGTGKTAAFGLPLIDR 95 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L G + + R R LIL PTREL Q+ADN Y K + V+ ++GG Q + L Sbjct: 96 LLSDGDKVQPRSVRALILAPTRELVNQIADNLRAYVKKTPVWVSSVVGGQNINTQIRHLA 155 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGR+LD +R + ++ + LV+DEAD+MLDMGFI ++ I L+ RQT Sbjct: 156 KGTDVLVATPGRLLDLVDRKAVKLDTAKYLVLDEADQMLDMGFIHALRRIEPLLGRPRQT 215 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++S+++L NP+RIEV A+ + Y K LL +LL Sbjct: 216 LLFSATMPKLVEELSKSYLTNPERIEVARAGKAADKVRQSV--HYIATKDKLNLLSKLLA 273 Query: 241 SQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + ++F K L L QGF+ +IHGN Q R + L FK G ++++ Sbjct: 274 ERPDDLS--LVFGRTKHGCEKLMKQLVAQGFAAASIHGNKSQGQRDRALREFKSGAVRIL 331 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP V HV+NF++P ENY+HRIGRT RAGR G+A A ++ K + Sbjct: 332 VATDVAARGIDIPAVSHVYNFNLPEVPENYVHRIGRTARAGRDGEAVAFCAPDERKMLRD 391 Query: 360 IEKLIEKKVDWLNGDLSSLN 379 I++L+ ++ + GD S+N Sbjct: 392 IQRLMNFDIEVV-GDDGSMN 410 >gi|238793027|ref|ZP_04636656.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC 29909] gi|238727627|gb|EEQ19152.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC 29909] Length = 667 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 147/364 (40%), Positives = 233/364 (64%), Gaps = 6/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 + +A ++ P+ L+L PTRELA QVA + K+ N + V L GG ++ Q + L + Sbjct: 69 I---KAELKSPQVLVLAPTRELAIQVAQALSDFSKHINGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 126 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D +++++ F+++P+ + + + +T I F Y K AL+ + L+S Sbjct: 186 LFSATMPDAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYRKNEALV-RFLES 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE G++ A++G+++Q R + L+ K+G + +++A Sbjct: 245 ED-FDAAIIFVRTKNGTLEVAEALESSGYNCAALNGDMNQSLREQTLNRLKDGRLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 304 TDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIE 363 Query: 362 KLIE 365 + ++ Sbjct: 364 RTMK 367 >gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC 700779] gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC 700779] Length = 524 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS ++ V AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +++IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|91775610|ref|YP_545366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91709597|gb|ABE49525.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] Length = 460 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 157/373 (42%), Positives = 241/373 (64%), Gaps = 9/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA L L+P+++ A+ ++GY PTPIQ + IP+VL+ D+ AQTGTGKTA+F LP+L Sbjct: 14 ISFASLNLAPELLKALDESGYTTPTPIQAQAIPVVLEGSDLMAGAQTGTGKTAAFTLPLL 73 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + P R LIL PTRELA QV ++ + Y K+ L ++ GG+ ++Q Sbjct: 74 QKLLPLASSSASPARHPVRALILTPTRELAIQVEESVKTYAKHTPLRSLVVFGGVDIKSQ 133 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L +G ++L+ TPGR+LDH + + + +++LV+DEADRMLDMGF+P ++ I +L+P Sbjct: 134 TPTLMKGVEILVATPGRLLDHVEQRTVQLGQVQMLVLDEADRMLDMGFMPDLKRILALLP 193 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ L+FSAT + E++K+SE FL P IEV ++T+E + + +++ K +L Sbjct: 194 KQRQNLMFSATFSPEIKKLSEEFLTKPVLIEVARSNATSENVTQKILLVESEH--KQHVL 251 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL+ + T I+F K + L LE++G + AIHG+ Q R++ L FK+G Sbjct: 252 ADLLRKEAT--QVIVFTKTKLSASRLARHLEREGIAAGAIHGDKSQLERIQALDAFKQGK 309 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I +VA+D+AARGLDI + V N+++P+ AE+Y+HRIGRTGRAG G A +LV+ E+ K Sbjct: 310 ITALVATDVAARGLDIDQLPMVVNYELPSAAEDYVHRIGRTGRAGASGIAISLVSSEEEK 369 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++++ Sbjct: 370 FLKEIEKLIKREL 382 >gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus iners DSM 13335] gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1] gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 11V1-d] gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 09V1-c] gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 03V1-b] gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 01V1-a] gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN 2503V10-D] gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 3008A-a] gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2062A-h1] gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2052A-d] gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2053A-b] gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus iners ATCC 55195] gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII 143-D] gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII 60-B] gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN 1401G] gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus iners DSM 13335] gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 11V1-d] gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 09V1-c] gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 03V1-b] gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 01V1-a] gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN 2503V10-D] gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2053A-b] gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2052A-d] gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2062A-h1] gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 3008A-a] gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus iners ATCC 55195] gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII 143-D] gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII 60-B] gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN 1401G] Length = 487 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 153/384 (39%), Positives = 242/384 (63%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L P+++ A+ AG+ + TPIQ KTIPLVL DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+K + ++ LI+EPTRELA Q + + G++ N V ++ GG Q + L+ Sbjct: 61 QTLDKKQEGIQ---ALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIRSLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++L+ TPGR+LDH R + +++++ +++DEAD MLDMGFI I++I + QT Sbjct: 118 QVPNILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDIESILTFASNDHQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ E F+ +P+ +++ + TA I+ FV + ++K +L +L+ Sbjct: 178 LLFSATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFV--RLKENEKFDILCRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD + ++F K+ V L + +G+ IHG++ Q RM +L FK+G + ++V Sbjct: 236 VQDP-ELSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ I Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E+L KK ++ L PP +K Sbjct: 355 ERLTRKK-------MTPLRPPSDK 371 >gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056] gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056] Length = 372 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 227/368 (61%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL ++ ++ A+ + GY PTPIQ+K IP L D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFKDLNITEPILKAIEEKGYTSPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ G+ R + + LIL PTRELA Q+++ + Y K + ++ GG+ AQ L Sbjct: 61 QHLQAGKERDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLH 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD N+G + ++++ V+DEADRMLDMGFI I+ + +P +QT Sbjct: 121 KGVDILVATPGRLLDLMNQGYIRLDSVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM D + ++ + L+ P +I + SST +TIE + + +K LL +L Sbjct: 181 LFFSATMPDTIIALTNSLLKQPVKIAITPKSSTVDTIEQTVY--FVEKKEKSKLLISILH 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ ++F K N + L K G AIHGN Q +R L NFK G I++M+ Sbjct: 239 KAEG-QSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K + I Sbjct: 298 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSQEERKLVSDI 357 Query: 361 EKLIEKKV 368 +KL KK+ Sbjct: 358 QKLTGKKL 365 >gi|237707985|ref|ZP_04538466.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA] gi|229457971|gb|EEO63692.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA] Length = 434 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 168/428 (39%), Positives = 256/428 (59%), Gaps = 17/428 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ + IP++L+ D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + + LIL PTRELA Q+ +NF++Y K + A++ GG+P +AQ L+ Sbjct: 61 QRLYQSDYK-KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG VLI TPGR+LD ++G + + +E V+DEADRMLDMGFI I+ + L+P RQT Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++++ L NPK++EV SST +TI+ + Y K+ L L Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQ---SVYFVEKKEKKDLLLHLL 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ +IF K L L K AIHGN Q +R + L+NFK+ T ++++ Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN +E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356 Query: 361 EKLIEKKV------DWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKK 411 +KLI ++ W+ G + E + A+ N A + + KS G + RRKK Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGS----KSNGDYWRRKK 412 Query: 412 NYSSQKSH 419 S++ Sbjct: 413 QVQSRQGQ 420 >gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida W619] gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619] Length = 559 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L+P +V AVL GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALDLNPNIVAAVLATGYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K + V + GG P Q + + Sbjct: 68 IDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + +++ ++ LV+DEAD ML +GF+ ++ I +P +RQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ PK +++ + + T I+ + +A +K + +LL+ Sbjct: 185 LFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHA--DQKIPAVLRLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ I F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 EE-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein [Leuconostoc gasicomitatum LMG 18811] gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein [Leuconostoc gasicomitatum LMG 18811] Length = 538 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ GYV+ TPIQ KTIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ LI+ PTRELA Q A+ +K G++ ++ V ++ GG Q + L+ Sbjct: 61 EHIDLDNKNIQ---ALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQNLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+LDH NR + + +++ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 118 SHPQILVGTPGRLLDHINRKTVKIEHVKTLVLDEADEMLNMGFLEDIESIIKNTPAERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+ NP+ I++ T + ++ FV + ++K + ++ Sbjct: 178 LLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFV--RMRENEKFDTMTRIFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q K I+F K+ V L LE +G+ +HG++ Q+ R ++L+ FK I ++V Sbjct: 236 VQ-APKLAIVFGRTKRRVEELARGLEARGYHASGLHGDLTQQMRSRVLAQFKSHEINILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HV+NFD+P E+Y+HRIGRTGRAG G + T V+ ++ ++ A+ Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVSPNEMDYLRAV 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 EDLTKKRMTAL 365 >gi|325003093|ref|ZP_08124205.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1] Length = 471 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 157/372 (42%), Positives = 218/372 (58%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+P ++ A+ GY P+PIQ I ++ D+ G A TGTGKTA+F LPML Sbjct: 36 FADLGLAPTLLAALDGLGYETPSPIQAAAIGPLIAGRDLLGQAATGTGKTAAFALPMLQR 95 Query: 63 LEKGR-ARVRMPRT--LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L GR +R R P+ ++L PTRELA QV + KYG VA + GG P Q +L Sbjct: 96 LADGRVSRDRGPKPFGIVLAPTRELAMQVGEAVTKYGAELGARVACVFGGAPIGPQLGQL 155 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DV++ TPGR +D NRG L ++ IE+ V+DEAD MLDMGF+ I+ I P RQ Sbjct: 156 RRGVDVVVATPGRAIDLINRGALSLDAIEVAVLDEADEMLDMGFVEDIETILGSTPEGRQ 215 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVN---TPSSTAETIEHCFVATYAQYSKKCALLQ 236 T+LFSATM +Q ++ L +P I + TP A + A + S L Sbjct: 216 TVLFSATMPGRIQSLARTHLSDPADIRIKREATPEGEAPKVRQT--AYHVPRSHVTVALG 273 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++L+ + I+FC + +V + +L +G A+HG +DQ R +++ + G Sbjct: 274 RVLEMEQPTA-AIVFCRTRADVDAVTETLTARGLRAEALHGGMDQEHRTRVVERLRAGRT 332 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +L+VA+D+AARGLDI + HV N DVP+ E+Y+HRIGR GRAGR G A TLV ++H Sbjct: 333 ELLVATDVAARGLDIDSLTHVVNHDVPSSPESYVHRIGRVGRAGREGVAITLVTPGSVRH 392 Query: 357 IDAIEKLIEKKV 368 + IE+LI V Sbjct: 393 LRNIERLIGGSV 404 >gi|163751726|ref|ZP_02158944.1| ATP-dependent RNA helicase [Shewanella benthica KT99] gi|161328378|gb|EDP99537.1| ATP-dependent RNA helicase [Shewanella benthica KT99] Length = 453 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 162/403 (40%), Positives = 243/403 (60%), Gaps = 15/403 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ ++ + GY PTPIQ + IPL L+ ++ AQTG+GKTA+FVLPML Sbjct: 6 MSFSNLGLSDPILTSLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPML 65 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G R + R LIL PTRELA QV ++ E YGK NL + GG+ +E Q + L Sbjct: 66 EMLARGETQRKKRVRALILTPTRELAVQVCNSIEAYGKYLNLKALAVYGGVDYEPQKQAL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR+ D + + + + IE+LV+DEADRMLDMGFI I I +P RQ Sbjct: 126 IEGIDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPVDRQ 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ + N ++ V S I+ V KK ALL L+ Sbjct: 186 NLLFSATLSRQVRELAKETIPNAIQLSVTKKSEGKPNIDQWLVTV--DKDKKSALLSHLI 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ + +IF K L LEK+G IH Q R +IL++FK G IQ + Sbjct: 244 K-ENRWQQALIFIETKHGAAKLVTQLEKRGIQAECIHSGRAQAIREQILADFKSGKIQFL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++ ++ARG+DI ++ V N+D+P A+ Y+HRIGRT RAG G+A +LV+K+D K++ Sbjct: 303 ISTGISARGIDIDELPLVINYDLPYPADEYVHRIGRTARAGAAGEAISLVSKDDFKNLCM 362 Query: 360 IEK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398 IEK LIE+KV ++ P E + ++ N KN P Sbjct: 363 IEKRLDHLIERKV------VAGFEPRKE-VPVSVLNFVPKNKP 398 >gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780] gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780] Length = 523 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS ++ V AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSADLLAEVDKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + ++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQHVETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ PK +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPKHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|312129179|ref|YP_003996519.1| dead/deah box helicase domain protein [Leadbetterella byssophila DSM 17132] gi|311905725|gb|ADQ16166.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila DSM 17132] Length = 373 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 154/372 (41%), Positives = 231/372 (62%), Gaps = 3/372 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +L LS + A+ + GY TPIQ + IP VLQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MNFENLNLSAPLAQALQEYGYTSLTPIQEQAIPKVLQGQDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + R R LIL PTRELA Q+ DNF+ Y K+ ++ A++ GG+ Q +L+ Sbjct: 61 ERILQNPKNKRQIRVLILTPTRELAIQIGDNFKAYSKHIKISHAVIFGGVNQNKQVNQLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G ++LI TPGR+LD ++G + +N ++ LV+DEADRMLDMGF+ ++ I + +P RQT Sbjct: 121 QGVEILIATPGRLLDLMSQGFVRLNGLDTLVLDEADRMLDMGFVHDVKKILTKIPTERQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++K + + L NP +EV SSTAET++ + +K LL +L+ Sbjct: 181 LFFSATMPQSIRKFAASILTNPAYVEVTPVSSTAETVKQGVY--FVDKKEKTPLLINILK 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + +IF K L L K G AIHGN Q +R + L +FK + +++ Sbjct: 239 DQSTDRT-LIFTRTKHGADKLVKQLGKVGIPAAAIHGNKSQNARQRALEDFKSSRLNVLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ +V N+++PN E Y+HRIGRTGRAG G A + +E++ I Sbjct: 298 ATDIAARGIDIEELPYVINYELPNVPETYVHRIGRTGRAGAEGVAVSFCDQEELNDFKNI 357 Query: 361 EKLIEKKVDWLN 372 +KL +++ L+ Sbjct: 358 QKLTGIRIEVLS 369 >gi|212634102|ref|YP_002310627.1| DEAD box family ATP-dependent RNA helicase [Shewanella piezotolerans WP3] gi|212555586|gb|ACJ28040.1| ATP-dependent RNA helicase, DEAD box family [Shewanella piezotolerans WP3] Length = 422 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 162/387 (41%), Positives = 234/387 (60%), Gaps = 15/387 (3%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA--RVRMPRTLI 77 GY +PTPIQ IP++L D+ AQTGTGKTA+F LP+L L A R LI Sbjct: 33 GYNEPTPIQTAAIPVILSGKDLMASAQTGTGKTAAFTLPILQKLAMQSAGKETDSIRALI 92 Query: 78 LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137 L PTRELA QV + +YG N L ++ GG+ +AQ L G D+++ TPGR+LDH Sbjct: 93 LVPTRELAVQVNKSVTEYGVNTALKSMVIYGGVSIDAQASSLAAGVDIVVATPGRLLDHL 152 Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 RG L + I+ LV DEADRMLDMGF+ I I +P RQTLLFSAT +D + ++S+ Sbjct: 153 RRGSLSLMAIDTLVFDEADRMLDMGFMDEINAILKQLPTERQTLLFSATFSDAIYRLSKK 212 Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257 L P RIEV+ +S A+++E A +K AL+ L+ + +IF +K+ Sbjct: 213 LLSKPVRIEVDKANSAADSVEQIVYAV--DSDRKAALISHLINKYH-WQQVLIFSRKKQT 269 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 + L G + A HG++ Q +R ++L++FK G I+ +VA+D+AARGLDI ++ +V Sbjct: 270 ADTITSKLVAAGVAAKAFHGDLSQGAREQVLNDFKAGNIKALVATDVAARGLDIVELNYV 329 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLNGDL 375 N+++P AE+YIHRIGRTGRAG GKA TL +++D + ++ +E L++K++ WL G Sbjct: 330 VNYEIPFVAEDYIHRIGRTGRAGNSGKAITLYSEDDARLLEELESLLDKRLPQQWLPG-- 387 Query: 376 SSLNPPLEKIDIAQHNHARKNNPIPQK 402 P L K+++ RKN Q+ Sbjct: 388 --FEPDLTKMEV----QPRKNGKAAQR 408 >gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum] Length = 444 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 227/369 (61%), Gaps = 2/369 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP+++ A+ D G+ PTPIQ ++IP V+ D+ GIAQTGTGKT F+LP+L Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + +GR R L+L PTRELA Q+ + Y K + LL+GG+ F Q + L+ Sbjct: 61 HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R D+++ TPGR+LDH R L + N +++IDEADRMLDMGF+P I I +P RQ+ Sbjct: 121 RNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQS 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239 LLFSAT +Q+++ F + + V ++ I ++ T + S+K LL+++L Sbjct: 181 LLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWI-TVSHGSQKLGLLKKVLD 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + IIF K++ +L +L G+ A+HG+ Q R ++LS F+ G ++++ Sbjct: 240 EGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV N+D+P AE+Y+HRIGRTGRAGR G+A + D + + Sbjct: 300 VATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRS 359 Query: 360 IEKLIEKKV 368 IE + K + Sbjct: 360 IETMAGKPI 368 >gi|300856701|ref|YP_003781685.1| putative RNA helicase [Clostridium ljungdahlii DSM 13528] gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528] Length = 525 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 153/371 (41%), Positives = 232/371 (62%), Gaps = 11/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F+DL L PKV+ A+ D G+ +P+ IQ ++IP++L +DV G AQTGTGKT +F PML Sbjct: 4 INFSDLNLDPKVLQAIDDMGFEEPSQIQAESIPVILDGNDVIGQAQTGTGKTLAFGAPML 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + K + + LI+ PTRELA QV D + K + + + GG P + Q + L+ Sbjct: 64 S---KITTKSKHISALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGRILDH R L ++NIE L++DEAD MLDMGFI I+NI RQT Sbjct: 121 RGMDVVVGTPGRILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENIIKATNSDRQT 180 Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237 LLFSATM D+++K+S +++ N K I++ + T + + + + ++ C +L Sbjct: 181 LLFSATMPDQIKKLSSRYMKSNIKSIKIAKNTLTVDKTKQYYYEIKQKDRFESLCRIL-- 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 D + IIFC K+ V L L+ +G++V +HG++ Q R+ L FKEG+++ Sbjct: 239 ---DVDEPSSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLE 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARG+D+ +V HV N+D+P E+Y+HRIGRTGRA + G A++LV + + Sbjct: 296 FLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILL 355 Query: 358 DAIEKLIEKKV 368 IEK + K+ Sbjct: 356 KQIEKFTKSKI 366 >gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II '5-way CG'] Length = 444 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 227/369 (61%), Gaps = 2/369 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLSP+++ A+ D G+ PTPIQ ++IP V+ D+ GIAQTGTGKT F+LP+L Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + +GR R L+L PTRELA Q+ + Y K + LL+GG+ F Q + L+ Sbjct: 61 HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R D+++ TPGR+LDH R L + N +++IDEADRMLDMGF+P I I +P RQ+ Sbjct: 121 RNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQS 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239 LLFSAT +Q+++ F + + V ++ I ++ T + S+K LL+++L Sbjct: 181 LLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWI-TVSHGSQKLGLLKKVLD 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + IIF K++ +L +L G+ A+HG+ Q R ++LS F+ G ++++ Sbjct: 240 EGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV N+D+P AE+Y+HRIGRTGRAGR G+A + D + + Sbjct: 300 VATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRS 359 Query: 360 IEKLIEKKV 368 IE + K + Sbjct: 360 IETMAGKPI 368 >gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522] gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 528 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 227/368 (61%), Gaps = 7/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D +S + A+ D G+ P+PIQ K IP +L+ HDV G AQTGTGKTA+F +P+L Sbjct: 2 MKFEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLL 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R ++LIL PTRELA QVA +K K + + GG Q K L+ Sbjct: 62 EKVTSDR----QVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR+LDH NR L + ++ L++DEAD MLDMGFI I+ I V RQT Sbjct: 118 RGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++K+S ++ NPK++ ++ TA +I + + K L +++ Sbjct: 178 MLFSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEK--NKLDSLCRVID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+ T+ GIIFC KK V L +L+ +G+ +HG++ Q R ++ F++ +I+ ++ Sbjct: 236 SE-TIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLI 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N+D+P E+Y+HRIGRTGRAGR G A TLV ++KH+ +I Sbjct: 295 ATDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSI 354 Query: 361 EKLIEKKV 368 E I+ + Sbjct: 355 EAEIKMTI 362 >gi|326802990|ref|YP_004320808.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae ACS-120-V-Col10a] gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae ACS-120-V-Col10a] Length = 508 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 154/384 (40%), Positives = 234/384 (60%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L P+++ AV + G+ + TPIQ +TIP L+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFEELNLDPRLLQAVKNMGFEETTPIQAQTIPYALEGRDVLGQAQTGTGKTAAFGLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ L++ PTRELA Q + GK + + GG Q +++ Sbjct: 61 EKIDHHTEHIQ---ALVIAPTRELAIQNGQELYRLGKEKGVRTVNVYGGANIRRQIHQIK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA V++ TPGR++D R L +N IE LV+DEAD ML+MGFI I+ I P RQT Sbjct: 118 KGAPVVVGTPGRLIDLMKRKVLNLNFIETLVLDEADEMLNMGFIEDIETIIRATPSNRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+Q++ E+F+Q+P +++ TA+TI+ F + + +K LL + + Sbjct: 178 LLFSATMPKEIQRIGEHFMQDPVTVKIEAKEMTADTIDQYFTKCHDR--EKFDLLTRFID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 K I+F K+ V + L ++G+ IHG++ Q R I+ +FK+G ++++V Sbjct: 236 VSHA-KLAIVFARTKRRVDEVSRGLIERGYQAEGIHGDLSQEKRSSIMKDFKDGRLEILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI +V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISNVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSITFVSNHEMGYLRTI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L KK +S L PP E+ Sbjct: 355 ENLTHKK-------MSPLRPPTEE 371 >gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43] gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43] Length = 508 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 163/395 (41%), Positives = 238/395 (60%), Gaps = 20/395 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVK-PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59 M F+ LGLS K + LD ++ PTPIQ + IP VL+ DV G+AQTGTGKTA+F LP+ Sbjct: 10 MLFSQLGLS-KALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPI 68 Query: 60 LTILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L L G+ A + R LIL PTREL+AQ+A + G+ +L A+++GG+ Q K Sbjct: 69 LHRLAPGKPAGPKKARVLILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKT 128 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G DVLI TPGR++D + + +N IE++V+DEAD+MLD+GF+P I+ I ++ P TR Sbjct: 129 LASGVDVLIATPGRLMDLIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPATR 188 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM E++++S+ L +P + V TA+ +EH + + Q K L L Sbjct: 189 QTLLFSATMPKEIRQLSDRHLTDPIEVSVIPAKKTADRVEHSVM--HMQPGAKMGALASL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + + I+F K+ LE G + AIHGN Q R + L+ F+ GT+ + Sbjct: 247 IRDRKGERV-IVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+P V V N+++PN E Y+HRIGRT RAG G A T A ++ + Sbjct: 306 LIATDIAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLR 365 Query: 359 AIEKLIE-----------KKVDWL---NGDLSSLN 379 IEK+++ VD L +GD + LN Sbjct: 366 DIEKMLKVAIPVENAPEGTYVDALADPDGDFAPLN 400 >gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208] Length = 399 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL K+V +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LPM+ Sbjct: 6 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ V+ LI+ PTRELA QV++ K + ++ V + GG Q + L++ Sbjct: 66 IDQKSNNVQ---ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRILDH NR L ++++E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 123 PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ E F+ +P+ I + TA IE FV + + +K +L +LL Q Sbjct: 183 FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 241 -APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359 Query: 363 LIEKKVDWLNG 373 +K++ L Sbjct: 360 TTKKRMQPLQA 370 >gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] Length = 503 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 156/370 (42%), Positives = 229/370 (61%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS ++ AV G+ + TPIQ +TIPL L+ HD+ G AQTGTGKTA+F +P++ Sbjct: 4 FQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPLI-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK V + LI+ PTRELA QV++ K G+ + V + GG Q + L++ Sbjct: 62 -EKVDVNVDAIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR L + ++ +++DEAD ML+MGFI I+ I S VP QTLL Sbjct: 121 PHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPENHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ PK ++V T I ++ Q +K +L +LL Q Sbjct: 181 FSATMPTPIRRIAEKFMNEPKVVKVQAKEVTMPNITQYYLEV--QEKRKFDILTRLLDMQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIF K+ V L +L +G+S IHG++ Q R+ +L FKEG+I ++VA+ Sbjct: 239 -SPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHNIER 357 Query: 363 LIEKKVDWLN 372 ++K++ L Sbjct: 358 TTKRKMERLT 367 >gi|148263694|ref|YP_001230400.1| DEAD/DEAH box helicase domain-containing protein [Geobacter uraniireducens Rf4] gi|146397194|gb|ABQ25827.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens Rf4] Length = 447 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 152/369 (41%), Positives = 225/369 (60%), Gaps = 6/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F P V V AGY PTPIQ + IP V+ DV G+AQTGTGKTA+F LP+L Sbjct: 1 MNFQSFDFHPDVAAGVTAAGYASPTPIQAQAIPPVMLGRDVMGLAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +G+ R LI+ PTRELA Q+ ++ G+ L + GG+ Q +KL+ Sbjct: 61 HRLMQGKQG--HVRALIVAPTRELAEQIHESISALGRQTRLRSITVYGGVNINPQIQKLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G ++++ PGR+LDH +G + ++ +E+LV+DEAD+M DMGF P I+ I +P RQT Sbjct: 119 SGVEIVVACPGRLLDHIGQGTIDVSRVEVLVLDEADQMFDMGFFPDIRRILKHLPKQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM DE+++++ L +P ++V ++ T+ H + K LL +LL+ Sbjct: 179 LLFSATMPDEIRRLAHEVLNDPVTVQVGN-TAPPVTVSHALYPV--EQHLKTPLLLELLR 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 DT ++ ++F K L LEK G+ ++ GN+ Q R L F++GT Q++V Sbjct: 236 HTDT-ESVLVFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+D+P+ AE Y+HRIGRTGRA R G AFTLV ED + AI Sbjct: 295 ATDIAARGIDVSQISHVVNYDIPDTAEAYVHRIGRTGRAARSGDAFTLVTSEDTAMVRAI 354 Query: 361 EKLIEKKVD 369 E+ ++ ++ Sbjct: 355 ERALKSSLE 363 >gi|300779124|ref|ZP_07088982.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910] gi|300504634|gb|EFK35774.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910] Length = 373 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 157/364 (43%), Positives = 221/364 (60%), Gaps = 3/364 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L ++ AV +AGY KPT IQ IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 2 MSFKSLNLINAIIRAVTEAGYSKPTEIQYTAIPHILAGKDIIGCAQTGTGKTAAFAMPIL 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+K + RTLIL PTRELA Q+ +NF Y K L+ + GG+ Q L Sbjct: 62 QLLKKYTPDHKEIRTLILTPTRELAIQIEENFAVYSKYLPLSQLSIYGGVSAGGQLAALR 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+L+ TPGR+LD N+ + ++ IEI V+DEADRMLDMGFI ++ + L+P RQT Sbjct: 122 KRVDILVATPGRLLDLVNQRHIDLSKIEIFVLDEADRMLDMGFINDVKKVLKLIPQKRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++K +E L NP ++ V SSTA+T++ + + K LL LLQ Sbjct: 182 LFFSATMPSGIRKFAETILNNPVKVTVTPVSSTAQTVKQS--VYFVEKRDKTGLLIDLLQ 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ M+ ++F K L LE G AIHGN Q +R L +FK I++++ Sbjct: 240 NEN-MRRSLVFTRTKYIANKLVQQLEGVGIFAAAIHGNKSQTARQNALDDFKSSKIKVLI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI D+ HV N+++PN E Y+HRIGRTGRAG G A + ++ + I Sbjct: 299 ATDIAARGIDIDDLPHVVNYELPNIPETYVHRIGRTGRAGTEGTAISFCDTDERLDLKNI 358 Query: 361 EKLI 364 +KLI Sbjct: 359 QKLI 362 >gi|261364093|ref|ZP_05976976.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996] gi|288567659|gb|EFC89219.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996] Length = 471 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 166/424 (39%), Positives = 254/424 (59%), Gaps = 13/424 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++V A+ + GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 4 FASLGLGSELVSALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 64 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 124 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT ++K++++F+ P+ +EV ++T+ +E +A A KK LL++ Sbjct: 184 RQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDAL--KKRNLLER 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ + +IHG+ Q+SR++ L+ FKEG+++ Sbjct: 242 LIVDLQ-MNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ K + K Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK--KNYSS 415 +AI++L D + P D A + A P +S G DR + +N S Sbjct: 361 EAIKELTGN--DLAVERIEGFEPQWWGTD-ADGDAATDTQHAPTRSRGSDRNRSERNNRS 417 Query: 416 QKSH 419 +++ Sbjct: 418 ERNE 421 >gi|261345155|ref|ZP_05972799.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541] gi|282566845|gb|EFB72380.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541] Length = 660 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 153/381 (40%), Positives = 239/381 (62%), Gaps = 10/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS ++ A+ D GY KP+PIQ + IPL+L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 MSFADLGLSASILNALSDLGYEKPSPIQQQCIPLLLNGNDVLGMAQTGSGKTAAFGLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 ++ ++ P+ L+L PTRELA QVA+ + K+ N + V L GG ++ Q + L Sbjct: 67 HNIDPD---LKAPQILVLAPTRELAVQVAEALSDFSKHMNRVNVVALYGGQRYDVQLRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G V++ TPGR+LDH RG L ++ ++ LV+DEAD ML MGFI ++NI S +P Q Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIDDVENIMSQIPAQHQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+++PK I + + +T I + +K L + L Sbjct: 184 TALFSATMPEPIRRITRRFMKDPKEIRIQSSITTRPDIAQSYWTVSGM--RKNEALVRFL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +S+D IIF K + + +LE+ G++ A++G+++Q R + L K G + ++ Sbjct: 242 ESED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGRLDIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356 +A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++ Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360 Query: 357 IDAIEKLIEKKVDWLNGDLSS 377 ++ KL +VD N +L S Sbjct: 361 VERTMKLTIPEVDLPNAELLS 381 >gi|91792251|ref|YP_561902.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91714253|gb|ABE54179.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 473 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 156/375 (41%), Positives = 233/375 (62%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ + GY PTPIQ K IP++L+ H++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSTLGLSQPILLALEELGYQTPTPIQEKAIPVILEGHNLIAAAQTGTGKTASFVLPLL 60 Query: 61 TILEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 ++ + R + R LIL PTRELA QVA+N E+Y K+ +LT + GG+ Sbjct: 61 ELINNTSLDNTVKVRPKRIRALILTPTRELAVQVAENIEQYSKHLSLTSLAIYGGVDAAP 120 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 K+L G D+L+ TPGR+LD + + + + + LV+DEADRMLDMGFI I I + Sbjct: 121 HKKRLIEGVDILVATPGRLLDMYTQRAVHFDELTHLVLDEADRMLDMGFIEDINKIIDKL 180 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT++ +++ +++ +Q+ K I ++ + IE A + KK AL Sbjct: 181 PQERQNLLFSATLSPQVRFLAKTAVQHAKEIAISAKVGKPK-IEQWLTAVDKE--KKSAL 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + QL++ D +IF K L LEK+ AIH Q SR ++L++FK G Sbjct: 238 ISQLIKEND-WPQALIFIETKHGAAKLVSQLEKRDIQAEAIHSGRSQASREQVLADFKSG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++ +VA+ +A+RGLDI D+ V N+D+P E+Y+HRIGRTGRAG G+A + V+ +D Sbjct: 297 KVRYLVATGIASRGLDIDDLARVVNYDLPFPPEDYVHRIGRTGRAGAQGEAISFVSNDDF 356 Query: 355 KHIDAIEKLIEKKVD 369 K++ AIE+L+ +++ Sbjct: 357 KNLCAIERLLGHEIE 371 >gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa E681] gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa E681] Length = 529 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 145/366 (39%), Positives = 233/366 (63%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L PKV+ A+ + G+ + TPIQ ++IP+ LQ D+ G AQTGTGKTA+F +P++ Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLINK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + ++R LI+ PTRELA QVA+ EK + L + GG Q + L++ Sbjct: 64 ISRSDEKIR---ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH NR + + ++ +V+DEAD MLDMGF+ IQ+I VP RQT+L Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E FL+NP+ + V +A I+ ++ + +K L +L+ Sbjct: 181 FSATMPANIKRLAEQFLKNPEHVSVIPKQVSAPLIDQAYIEVPER--QKFEALSRLI-DM 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ + I+F K+ V L +L+K+G+S +HG++ Q R ++ F++G+I ++VA+ Sbjct: 238 ESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ V HV NFD+P E+Y+HRIGRTGRAG+ G+A++ V +I H+ IE+ Sbjct: 298 DVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIER 357 Query: 363 LIEKKV 368 + ++ Sbjct: 358 VTRHRI 363 >gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564] gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564] Length = 523 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|118580947|ref|YP_902197.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503657|gb|ABL00140.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM 2379] Length = 436 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 161/450 (35%), Positives = 255/450 (56%), Gaps = 20/450 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL +++ A+ GY PTPIQ IP + + D+ AQTGTGKTA+F LP++ Sbjct: 1 MSFETLGLRAELLSAIAAQGYTNPTPIQTGAIPAIFEGCDLLAGAQTGTGKTAAFALPIV 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + R PR L+L PTRELAAQV++ Y + +L ++ GG+ +AQ ++ Sbjct: 61 QMLGENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+++ TPGR+LDH RG + ++ I+ LV+DEADRMLD+GFI I + +P R Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIHKVAQYLPVKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT + ++++++ L P+RIEV + A+ + + S+K +L L Sbjct: 181 QTLLFSATYSQSIKQLADELLNQPRRIEVARRNIAADAVTQAVYQI--ERSRKREMLSFL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ ++F + L L G AIH N Q R + L+ FK G ++ Sbjct: 239 IRT-GRWNQVLVFARTRYGADKLTEELLLDGIKASAIHSNKSQSLRTRTLAEFKRGEFRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV N+D+P E+Y+HRIGRTGRAG G A +LV++E+ + Sbjct: 298 LVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEDGVALSLVSREEQPLLQ 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK- 417 AIEKL++ + P + + A+++ + + ++ K + +K Sbjct: 358 AIEKLLKYAI------------PRQTLAEFPQYAAKRSIEVKESKQAKEKSKARKTREKL 405 Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRG 447 + P E + S+ ++ ++E A G RG Sbjct: 406 TQAP--EKTRTSRRKKVVEERPAPKTGRRG 433 >gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4] gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4] Length = 511 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 153/384 (39%), Positives = 236/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ AVLD GY +PTPIQ +TIP VL D+ G AQTGTGKTA+F LP+L Sbjct: 1 MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ +I+ PTRELAAQ K GK V ++ GG Q L+ Sbjct: 61 QNVDLDNPNIQ---AIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQINALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + +++++ LV+DEAD MLDMGF+P I+ I P RQT Sbjct: 118 SHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+ F+ +PK++ V + TA+ ++ ++ + + +K +L +++ Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRS--KEFEKFDMLTRIID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + K ++F K+ V + L +G++ IHG++ Q+ RM IL F++G + ++V Sbjct: 236 VQ-SPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG HG + T V ++ ++ + Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E+L +K+ L L PP E+ Sbjct: 355 ERLTKKR-------LLPLKPPTEE 371 >gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037] gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037] Length = 524 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS +++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|162149460|ref|YP_001603921.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5] gi|161788037|emb|CAP57641.1| putative ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5] Length = 429 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 155/375 (41%), Positives = 232/375 (61%), Gaps = 15/375 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADL L+P ++ A+ + GY PTPIQ ++IP++L+ D+ G+AQTGTGKTA+F LP+L Sbjct: 5 MTFADLSLAPTLLRALAEEGYANPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLL 64 Query: 61 TILE-------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L KG ARV L+L PTREL +Q+AD F +G++ +V + GG+ Sbjct: 65 HRLAMAPRPAPKGGARV-----LVLAPTRELVSQIADGFTSFGRHQPPSVTTIFGGVSQF 119 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L+ G D+++ PGR+LD ++G ++ +E LV+DEAD+MLDMGF I+ I + Sbjct: 120 HQVNALKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVAT 179 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P R T+LFSATM + ++E+ L++P ++E+ PS+T + IE + A KK A Sbjct: 180 LPKDRHTVLFSATMPKSIAALAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDA-ADKKAA 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L + ++F QK +C + + G + A+HGN Q R + L F+ Sbjct: 239 LLSML--RTPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRA 296 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GT Q++VA+D+AARG+D+ V HVFN D+P+ E+Y+HRIGRTGRAGR+G A TL E Sbjct: 297 GTAQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQ 356 Query: 354 IKHIDAIEKLIEKKV 368 + +E+ I + + Sbjct: 357 RAWLRDVEREIGRAL 371 >gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase domain-containing protein [Geobacter uraniireducens Rf4] gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens Rf4] Length = 438 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 149/367 (40%), Positives = 225/367 (61%), Gaps = 5/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL +++ A+ GY PTPIQ + IP++ + D+ AQTGTGKTA+F LP++ Sbjct: 1 MSFESLGLRAELLSAIAAQGYTTPTPIQTEAIPVIFEGCDLLAGAQTGTGKTAAFALPIV 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + R PR L+L PTRELAAQV++ Y + +L ++ GG+ +AQ ++ Sbjct: 61 QRLGENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+++ TPGR+LDH RG + ++ I+ LV+DEADRMLD+GFI I + +P R Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTINLSRIKFLVLDEADRMLDLGFIDDIHKVAEYLPAKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT + ++++++ L P+RIEV + A+ + + S+K +L L Sbjct: 181 QTMLFSATYSQSIKQLADELLDQPRRIEVARRNIAADAVTQAVYQV--EKSRKREMLSFL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S+ ++F + L L G AIH N Q R + L+ FK G ++ Sbjct: 239 I-SKGNWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRTRTLAEFKRGEFRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV N+D+P E+Y+HRIGRTGRAG +G A +LV+ E+ + Sbjct: 298 LVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGENGVALSLVSHEEQSLLQ 357 Query: 359 AIEKLIE 365 AIEKL++ Sbjct: 358 AIEKLLK 364 >gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus infantis SK1302] gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus infantis SK1302] Length = 525 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus acidilactici DSM 20284] gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus acidilactici DSM 20284] Length = 511 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 153/384 (39%), Positives = 236/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ AVLD GY +PTPIQ +TIP VL D+ G AQTGTGKTA+F LP+L Sbjct: 1 MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ +I+ PTRELAAQ K GK V ++ GG Q L+ Sbjct: 61 QNVDLDNPNIQ---AIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQINALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + +++++ LV+DEAD MLDMGF+P I+ I P RQT Sbjct: 118 SHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+ F+ +PK++ V + TA+ ++ ++ + + +K +L +++ Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRS--KEFEKFDMLTRIID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + K ++F K+ V + L +G++ IHG++ Q+ RM IL F++G + ++V Sbjct: 236 VQ-SPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG HG + T V ++ ++ + Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E+L +K+ L L PP E+ Sbjct: 355 ERLTKKR-------LLPLKPPTEE 371 >gi|148557617|ref|YP_001265199.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas wittichii RW1] gi|148502807|gb|ABQ71061.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1] Length = 453 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 160/369 (43%), Positives = 235/369 (63%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL + A+ GY PTPIQ + IP +L+ D+CGIAQTGTGKTA+F LP L Sbjct: 18 FSELGLIEPIQRALAAKGYDIPTPIQAQAIPPLLEGRDLCGIAQTGTGKTAAFALPSLHH 77 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA+Q+A++F +YGK L+VA + GG+P Q ++L+ Sbjct: 78 LHDNLKHTPPQGCRMLVLAPTRELASQIAESFVQYGKFLRLSVATVFGGVPINKQIRQLQ 137 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD ++ L + +EI V+DEAD+MLD+GFI ++ + L+P RQ+ Sbjct: 138 RGVDILVATPGRLLDLIDQRALSLKFVEIFVLDEADQMLDLGFIHALKRVDQLLPKKRQS 197 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM + ++ + FL NP ++ V S+TAE +E AT+ +K ALL ++ Sbjct: 198 LFFSATMPKAIAELGDRFLTNPAKVSVAPQSTTAERVEQ--FATFCNPQEKQALLTMRIR 255 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + + ++F K + +L G + AIHGN Q R + L F+ G ++++V Sbjct: 256 S-EPIDRALVFTRTKHGADRVVKNLRAAGIAAEAIHGNKSQPQRERALGLFRTGEVKILV 314 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HVFNF++PN AE Y+HRIGRT RAG G A VA ++ ++ AI Sbjct: 315 ATDIAARGIDVGGVSHVFNFELPNVAEQYVHRIGRTARAGAAGIAIAFVADDERPYLKAI 374 Query: 361 EKLIEKKVD 369 EKL + K+D Sbjct: 375 EKLTKVKLD 383 >gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5] gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5] Length = 525 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS +++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|329960847|ref|ZP_08299126.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057] gi|328532133|gb|EGF58937.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057] Length = 423 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 231/368 (62%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ + GY PTPIQ K+IP++LQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R + + LIL PTRELA Q+ ++FE YG+ L ++ GG+ + Q +L+ Sbjct: 61 QKLYKTDNRKGI-KALILTPTRELAIQIGESFEAYGRYTGLRHTVIFGGVGQKPQTDELK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +L+ TPGR+ D N+G + + ++ V+DEADRMLDMGFI I+ I +P RQT Sbjct: 120 RGVQILVATPGRLQDLVNQGFINLKALDFFVLDEADRMLDMGFIHDIRRILKFLPAKRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++ ++ + L +P+++EV SST +TI + + +K LL LL+ Sbjct: 180 LFFSATMPPEIETLANSMLTDPEKVEVTPASSTVDTISQSVY--FVEKKEKKDLLIHLLK 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IF K L +L K G AIHGN Q +R + L+ FK T+++++ Sbjct: 238 D-PSIASVLIFTRTKHGADKLARTLSKSGIPAEAIHGNKSQNARQRALTGFKSHTLRVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDI 356 Query: 361 EKLIEKKV 368 +KLI K + Sbjct: 357 QKLIGKTI 364 >gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris MCS10] gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10] Length = 452 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 229/371 (61%), Gaps = 5/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+DLGL+ ++ A+ D GY PTPIQ + IP +++ D+ GIAQTGTGKTASFVLP+L Sbjct: 4 FSDLGLAEPILRALNDEGYETPTPIQREVIPAMIEGRDIVGIAQTGTGKTASFVLPILNR 63 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++E+ R + R LIL PTREL+AQ+ +N Y ++ ++ L++GG+ Q + L Sbjct: 64 LIEENRPTHPKTCRALILSPTRELSAQILENVRGYSRHMRVSSTLVVGGVKPGPQIRALS 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGR+LD G + ++ +IL++DEAD+MLD+GF P I+ I S +P RQT Sbjct: 124 KGVDVLVATPGRLLDLMQSGAVKLSETKILILDEADQMLDLGFFPAIRKIVSFLPNKRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L SATM ++ +++ L +PK + V S E IE V + SKK LL+ L Sbjct: 184 ALLSATMPKPIRALAQEMLDDPKEVSVAPASRPIERIEQSVV-LLPKESKKDLLLE--LM 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S ++ I+F K + L G AIHGN Q R+K L FK G ++++V Sbjct: 241 SDRAVERAIVFSRTKHGADKINRHLVDYGLKSAAIHGNKSQAQRIKALDGFKTGAVKILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N D+PN E+Y+HRIGRT RAG+ G A ++ + +++ I Sbjct: 301 ATDIAARGIDVDNVSHVVNHDLPNLPESYVHRIGRTARAGKSGVAVSMCEPGEYEYLRDI 360 Query: 361 EKLIEKKVDWL 371 E+L +D + Sbjct: 361 ERLTGLDIDRV 371 >gi|229589245|ref|YP_002871364.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25] gi|229361111|emb|CAY47974.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25] Length = 557 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L+P ++ AV+ GY +P+ IQ ++IP+++ D+ G AQTGTGKTA+F LP+L Sbjct: 8 FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHC 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPAK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + +++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++P+ +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae Taiwan19F-14] gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503322|ref|YP_003725262.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae TCH8431/19A] gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae Taiwan19F-14] gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae TCH8431/19A] gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA04375] Length = 524 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 152/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++ Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353 Query: 360 IEKLIEKKVDWL 371 IE L +K++ L Sbjct: 354 IENLTKKRMKGL 365 >gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae TIGR4] gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae R6] gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae TIGR4] gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39] gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP11-BS70] gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS69] gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1087-00] gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae SP195] gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae MLV-016] gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI 1974] gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI 1974M2] gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS455] gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP-BS293] gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS292] gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS397] gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS457] gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS458] gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae AP200] gi|61223743|sp|P0A4D7|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName: Full=Exported protein 9 gi|61223744|sp|P0A4D8|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName: Full=Exported protein 9 gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae TIGR4] gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39] gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP11-BS70] gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS69] gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1087-00] gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae SP195] gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae MLV-016] gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104] gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200] gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS455] gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS292] gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP-BS293] gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS458] gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS457] gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS397] gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae AP200] gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA17570] gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA41317] gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA47368] gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA47901] Length = 524 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 152/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++ Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353 Query: 360 IEKLIEKKVDWL 371 IE L +K++ L Sbjct: 354 IENLTKKRMKGL 365 >gi|218261592|ref|ZP_03476346.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii DSM 18315] gi|218223947|gb|EEC96597.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii DSM 18315] Length = 419 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 161/422 (38%), Positives = 252/422 (59%), Gaps = 8/422 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L + A+ Y PTPIQ + IPLVL D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFEQLELIEPIRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPII 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E+ + P + L+L PTRELA Q+ ++F YG ++ ++ GG+ + Q Sbjct: 61 QKIEEQISSRCKPGIKALVLTPTRELAIQIGESFTAYGCYTHVKHTVIFGGVGQKPQTDA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG DVLI TPGR+LD ++G + ++ +E V+DEADRMLDMGFI I+ I L+P R Sbjct: 121 LERGVDVLIATPGRLLDLLSQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+++++ L P+++EV SST +TI+ + + +K LL+ L Sbjct: 181 QSLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVY--FVEKVEKINLLKNL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + ++++ ++F K + L K G AIHG+ Q +R + LS+FK+ T+++ Sbjct: 239 LEDR-SLESVLVFTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RG+D+ + HV N+D+PN E Y+HRIGRTGRAGR G AF+ E++ ++ Sbjct: 298 LIATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLK 357 Query: 359 AIEKLIEKKVDWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 I+KLI K V G + + + + + A +++ N K G R K ++ Sbjct: 358 DIQKLIGKDVPVAGGHMFETAEVKEAVAEKKKAMKEESKRRNMFGNKRDGSFWRNKKRTA 417 Query: 416 QK 417 K Sbjct: 418 NK 419 >gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata HTCC2501] gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata HTCC2501] Length = 422 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 158/375 (42%), Positives = 228/375 (60%), Gaps = 6/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L+ ++ A+ Y +PT IQ + IP VL R DV G AQTGTGKTA+F +P+L Sbjct: 1 MTFEQLELAEPILRALKKENYSRPTDIQAQAIPHVLNRRDVMGSAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 LE+ R + + LI+ PTRELA Q+ ++ YG + ++ GG+ Q + Sbjct: 61 QHLERDRRYGGKRGVVNALIVTPTRELAIQIGESLTAYGHYTGIRNTVIFGGVKQGKQVE 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+L+ TPGR+LD ++G + ++ +E V+DEADRMLDMGFI I+ I + +P Sbjct: 121 ALRRGVDILVATPGRLLDLMDQGIISLSKVEYFVLDEADRMLDMGFIHDIRKIIARLPAE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ+L FSATM D++ +S L +P ++ V+ SSTAETI Y S K LL Sbjct: 181 RQSLFFSATMPDDIVSLSRKILSDPVKVAVSPVSSTAETIRQYLY--YTNKSDKNDLLLH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ D M ++F K + +L K+ S AIHGN Q R K L FK+G ++ Sbjct: 239 ILKDPD-MDQVLLFARTKHGADRIVKNLGKKKISAAAIHGNKSQNQRQKALGQFKDGKVR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + +V NFD+PN AE Y+HRIGR+GRAG G + +L E+ +I Sbjct: 298 VLVATDIAARGIDIDQLRYVVNFDIPNVAETYVHRIGRSGRAGEEGVSISLCEPEENAYI 357 Query: 358 DAIEKLIEKKVDWLN 372 IEKLI+ K++ + Sbjct: 358 RDIEKLIDLKIERVE 372 >gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15] gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980] gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15] gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980] Length = 503 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 237/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LSP+++ +V AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R ++ L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 61 EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + ++ LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPEQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F+++P +++ TA+ I+ +V A+ +K ++ +L Sbjct: 178 LLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVR--AKEYEKFDIMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ +++L PP EK Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371 >gi|254490715|ref|ZP_05103899.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010] gi|224464070|gb|EEF80335.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010] Length = 605 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 152/367 (41%), Positives = 231/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LG++P +V A+ +AGY P+PIQ ++I +L+ D+ G AQTGTGKTA+F LP+L+ Sbjct: 12 FSELGIAPAIVKAIQEAGYETPSPIQAQSITPLLEGRDLLGQAQTGTGKTAAFSLPLLSR 71 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + P+ L+L PTRELA QVA+ + YG++ N V + GG Q ++L+R Sbjct: 72 LND---RQKTPQMLVLTPTRELAIQVAEAIQGYGRHIKNFHVLPIYGGQSMGIQLRQLQR 128 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGRILDH RGKL + N++ LV+DEAD ML MGFI ++ I P RQ Sbjct: 129 NPQVIVGTPGRILDHIRRGKLALENLQSLVLDEADEMLRMGFIDDVETILQETPKDRQVA 188 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +V++ +L NP + + + +ST +TI + + K L ++L+ Sbjct: 189 LFSATMPKPIHRVAQRYLNNPVEVHIKSKTSTVDTINQRYWQVTGLH--KLDALTRILEV 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ IIF K + V+L LE +G++ ++G+++Q R K + K G I ++VA Sbjct: 247 EE-FDGMIIFVRTKNSTVDLAEKLEARGYASSPLNGDMNQALREKTIEKMKAGKIDILVA 305 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + HV N+D+P E+Y+HRIGRTGRAGR G+A VA + + + AIE Sbjct: 306 TDVAARGLDIQRMSHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLGAIE 365 Query: 362 KLIEKKV 368 K ++ + Sbjct: 366 KATKQTI 372 >gi|114564231|ref|YP_751745.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335524|gb|ABI72906.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 433 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 157/367 (42%), Positives = 233/367 (63%), Gaps = 7/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY TPIQ + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MKFESFSFAPEILRAIAECGYQSMTPIQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + MP RTLIL PTRELAAQVADN Y K+ NLTV + GG+ + Q++ Sbjct: 61 QRMCDN-PKETMPSNTRTLILTPTRELAAQVADNISAYSKHLNLTVLTIYGGVKIDTQSQ 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+RGADV++ TPGR+L+H L ++N+E LV+DEADRMLDMGF I+ I V Sbjct: 120 KLKRGADVIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSADIKKILQAVNKK 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ +LFSAT + E++K++ + L+ PK I V+ ++TA+T+ V + +K L+ + Sbjct: 180 RQNMLFSATFSSEVKKLANDMLEKPKVITVDKQNTTADTVSQ--VVYPVEQRRKRELISE 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ +++ + ++F + L L G +HG Q SR + L F EG I+ Sbjct: 238 LIGTKN-WQQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+++AARGLDI ++ +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 297 VLVATEVAARGLDIKNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTL 356 Query: 358 DAIEKLI 364 IEKLI Sbjct: 357 ADIEKLI 363 >gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42] gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42] Length = 560 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 151/375 (40%), Positives = 233/375 (62%), Gaps = 4/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LG+S +V + G PTPIQ + IPL+L+ D+ G+AQTGTGKTA+F LP++ Sbjct: 24 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 83 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L ++ R R RTLIL PTREL Q+A+N +K+ + L + +++GG+ Q +L Sbjct: 84 KLLADERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSPLRINVVVGGVSINKQQLQL 143 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+G D+L+ TPGR+LD NR + + + LV+DEAD+MLD+GF+ ++ I LVP RQ Sbjct: 144 EKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQ 203 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++ +L +P ++EV P A+ +E +V + K LL++ L Sbjct: 204 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQ-YVHFVGGKNDKTELLRKSL 262 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ I+F K L L+ G+SV +IHGN Q R + L F++G+I+ + Sbjct: 263 -TENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DIP V HV+N+D+P + Y+HRIGRT RAGR G A A ++ K + Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381 Query: 360 IEKLIEKKVDWLNGD 374 IE+L+ + +G+ Sbjct: 382 IERLMGIDITVASGE 396 >gi|126726299|ref|ZP_01742140.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150] gi|126704162|gb|EBA03254.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150] Length = 438 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 151/383 (39%), Positives = 236/383 (61%), Gaps = 12/383 (3%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 +GLSP+++ + G+ PTPIQ + IP +L D+ G+AQTGTGKTA+F LP+L L Sbjct: 1 MGLSPRILDRLSSKGFTDPTPIQSQAIPHILNGRDIMGLAQTGTGKTAAFGLPILHHLWH 60 Query: 66 --GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123 + R R LIL PTRELA+Q+ +N + ++ +L VAL++GG+ Q K+L++G Sbjct: 61 VGTKPEDRSARALILAPTRELASQITENLLIFSRDTHLKVALVVGGVSINTQIKRLQKGT 120 Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183 DVL+ TPGR+LD NR + +++ LV+DEAD+MLDMGFI ++ I++ +P RQT++F Sbjct: 121 DVLVATPGRLLDLLNRRAITLSDARYLVLDEADQMLDMGFIHDLRKISTHLPEERQTMMF 180 Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243 SATM + +++E +L +P R++V+ P A+ + + K L++LL + Sbjct: 181 SATMPKLMGELAETYLNSPLRVQVSPPGKAADKVTQEV--HFMLQGDKGQHLKKLLGNHR 238 Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 + ++F K L L GF+ +IHGN Q R + L FK G ++++VA+D Sbjct: 239 E-ERALVFSRTKHGAEKLKKGLVAVGFAAASIHGNKSQGQRTRALEEFKSGEVKILVATD 297 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 +AARG+DIP V +V+N+D+PN ENY+HRIGRT RAG G A + +++ + AIEK+ Sbjct: 298 VAARGIDIPQVMYVYNYDLPNVPENYVHRIGRTARAGAEGTAIAFCSPDEMGELRAIEKV 357 Query: 364 IEKKVD------WLNGDLSSLNP 380 ++ + W +GD+ P Sbjct: 358 LKSTIKISHGKPW-DGDIEGRGP 379 >gi|57235067|ref|YP_180931.1| DEAD-box ATP dependent DNA helicase [Dehalococcoides ethenogenes 195] gi|57225515|gb|AAW40572.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dehalococcoides ethenogenes 195] Length = 560 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 153/375 (40%), Positives = 227/375 (60%), Gaps = 8/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P V+ V GY +PTPIQ + IP +L+ HDV G+AQTGTGKTA++ LP++ Sbjct: 1 MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L R RVR TL+L PTRELA Q+A++F G+ + + GG+ + Q ++L Sbjct: 61 QKMLSTPRGRVR---TLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DV++ PGR+LDH RG + + +E L+IDEADRM DMGF P IQ+I + Q Sbjct: 118 RSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E++K++ NP I++ T + A ++ H + +K LL ++L Sbjct: 178 TLLFSATMPPEVRKLTLETQTNPVTIQIGT-QAPASSVSHSVYPV--KNHQKTPLLIEIL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ +T K+ +IF K NL + + GF+ ++ GN+ Q R ++ F+ G +++ Sbjct: 235 KTTET-KSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV N+D+P+ E+Y HRIGRTGR R G+A +LV D + Sbjct: 294 VATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRD 353 Query: 360 IEKLIEKKVDWLNGD 374 I+KLI + L D Sbjct: 354 IQKLINSPIQRLRVD 368 >gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 539 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 158/367 (43%), Positives = 230/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L+ ++V A+++ G+ +PTPIQ KTIP+ L+ D+ G AQTGTGKTA+F +P + Sbjct: 14 FGELTLNSRIVQALVNMGFEEPTPIQQKTIPISLEGKDIIGQAQTGTGKTAAFAIP---V 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-ER 121 LEK +R + LI+ PTRELA QVA+ GK + + GG + Q K L ++ Sbjct: 71 LEKIDSRRNGVQALIITPTRELAIQVAEEISNIGKYCRIRALPIYGGQSIDRQIKALKQQ 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR+LDH RG L + + +V+DEAD MLDMGFI I+ I + P TRQT Sbjct: 131 RVQIVIGTPGRLLDHLRRGTLRLEQVATVVLDEADEMLDMGFIEDIEAILNQTPTTRQTF 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ +E+ ++S +L +P+ I V+ + T IE + T + S K L +LL + Sbjct: 191 LFSATIPEEILRLSRKYLNSPEFITVSRNNLTVPLIEQVYYET--RESTKLDALARLLDA 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + IIFC K+ V L SL+ +G+ +HG++ Q R ++ FK G ++ +VA Sbjct: 249 LD-ISLAIIFCRTKRGVDELVASLQVRGYQAAGLHGDLSQYQRNHVMRQFKAGQVEFLVA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI +V HV NFDVP E Y+HRIGRTGRAG+ G A +LV+ D + + IE Sbjct: 308 TDVAARGLDIENVSHVINFDVPQDPEFYVHRIGRTGRAGKTGMAISLVSPRDFRQLRLIE 367 Query: 362 KLIEKKV 368 K+ + +V Sbjct: 368 KITKSRV 374 >gi|254506284|ref|ZP_05118427.1| DNA and RNA helicase [Vibrio parahaemolyticus 16] gi|219550764|gb|EED27746.1| DNA and RNA helicase [Vibrio parahaemolyticus 16] Length = 426 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 163/408 (39%), Positives = 241/408 (59%), Gaps = 15/408 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA SP++V A+ + GY K TP+Q K IP + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFASQNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIV 60 Query: 61 -TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL+ + R R R +IL PTRELAAQ+A N + Y K ++ + GG +Q K Sbjct: 61 QNILDNEKPRQRHQTRAVILAPTRELAAQIASNIQDYTKYTDVKTVAIYGGAKMSSQQKA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G DVL+ TPGR+++H + + + N+E LV DEADRMLDMGFI I++I + V Sbjct: 121 LEAGVDVLVATPGRLIEHMDMNNVSLANLEFLVFDEADRMLDMGFISAIESIMAGVNTKP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT + ++ ++ L+ PKR+ V + TA+TI H V + +K LL +L Sbjct: 181 QTMLFSATFSAQMNTLAGKILRQPKRVSVARENVTADTIAH--VVYPVEQERKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ L L+ G HG+ Q +R + L FK G ++ Sbjct: 239 I-GRKNWQQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 M+A+D+AARGLDI ++ HV NFD+P AE+Y+HRIGRTGRAG+ G A + V +E+ + Sbjct: 298 MIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNREEELTLQ 357 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP-----LEKIDIA---QHNHARKNNP 398 +E LI +++ +L P LE++ ++ R+NNP Sbjct: 358 QVETLIGQRI--YRKELEGYEPKNRDALLERMHTKPAFKNRRTRQNNP 403 >gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP23-BS72] gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP23-BS72] Length = 511 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 152/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++ Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353 Query: 360 IEKLIEKKVDWL 371 IE L +K++ L Sbjct: 354 IENLTKKRMKGL 365 >gi|312959777|ref|ZP_07774293.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6] gi|311285943|gb|EFQ64508.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6] Length = 557 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 234/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L+P ++ AV+ GY +P+ IQ ++IP+++ D+ G AQTGTGKTA+F LP+L Sbjct: 8 FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHC 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPAK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + +++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++P+ +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|312892306|ref|ZP_07751801.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM 18603] gi|311295090|gb|EFQ72264.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM 18603] Length = 428 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 153/384 (39%), Positives = 241/384 (62%), Gaps = 6/384 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ ++IP++L+R D+ G AQTGTGKTA+F +P+L Sbjct: 1 MSFENLKLIEPILKALKHEGYTNPTPIQEQSIPIILERKDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 IL + + + R +TLIL PTRELA Q+ ++F YGK+ L ++ GG+ Q + Sbjct: 61 QILYQEKVQNRDHKGIKTLILTPTRELAIQIDESFAAYGKHTGLKHLVIFGGVSQHHQVE 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+RG D+L+ TPGR+LD + + + +++ILV+DEADRMLDMGF+ ++ I + +P Sbjct: 121 ALKRGVDILVATPGRLLDLVQQKFVHLESLKILVLDEADRMLDMGFVNDVKKIIAKIPVK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL FSATM E+Q +++ L P+++EV SSTA+TI+ + + K +LL Sbjct: 181 RQTLFFSATMPKEIQTLADTILNKPEKVEVTPVSSTADTIQQGIY--FVDKNDKKSLLIH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ + ++ ++F K + L + G + AIHGN Q +R + L+NFK + + Sbjct: 239 ILKDKK-IETALVFTRTKHGADKVVKDLIRVGITAEAIHGNKSQNARQRALTNFKNRSTR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ D+ HV N+++PN E Y+HRIGRTGRAG G A + ++ + + Sbjct: 298 ILVATDIAARGIDVDDLTHVINYELPNVPETYVHRIGRTGRAGASGIALSFCDADEGEFL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP 381 I KLI K + ++ + P Sbjct: 358 YDIHKLITKAIPVIDDQPYPMKAP 381 >gi|103487431|ref|YP_616992.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] gi|98977508|gb|ABF53659.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] Length = 459 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 225/371 (60%), Gaps = 5/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL + A+ Y +PTPIQ + IP +++ D+CGIAQTGTGKTA F LP + Sbjct: 4 FNDFGLHADINRALAAKDYTQPTPIQTQAIPPLMKGRDLCGIAQTGTGKTAGFSLPSIHH 63 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R R R L+L PTRELAAQ+A + YG+ L+V+ + GG+P Q + L Sbjct: 64 LLTYPHRPTPRGCRMLVLAPTRELAAQIAQSCRDYGRFTKLSVSTVFGGVPINKQIRDLS 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD ++ L ++++EI V+DEAD+M+DMGFI ++ + L+P RQ Sbjct: 124 QGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRVAKLLPSRRQN 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ +++ FL +P + V ++TAE + AT+ + +K ALL +++ Sbjct: 184 LFFSATMPKEIAGLADQFLNDPVTVSVAPQATTAEKVRQ--FATFVEQKEKQALLHHVIK 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + +IF K + L+ G AIHGN Q R L F+ G ++L+V Sbjct: 242 TSD-IDRALIFTRTKHGADRVVRHLKGAGIEAFAIHGNKSQAQRTAALQAFRSGQVRLLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV NF++PN E Y+HRIGRT RAG G A + +A ++ +I I Sbjct: 301 ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGIAISFIAPDERPYIRDI 360 Query: 361 EKLIEKKVDWL 371 E++ + + + Sbjct: 361 ERVTRTRAEPM 371 >gi|308050752|ref|YP_003914318.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] gi|307632942|gb|ADN77244.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] Length = 426 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 158/370 (42%), Positives = 227/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA G P++V A+ GY K TPIQ K IPL + HD+ AQTGTGKTA+F LPML Sbjct: 1 MSFASQGFCPEIVQALEQCGYQKMTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPML 60 Query: 61 -TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++++K + R R R LIL PTRELA QVADN +Y + T A+ GG+ +Q ++ Sbjct: 61 QSMVDKPQQRSRRHVRGLILAPTRELAQQVADNVAQYHQFLPFTSAVAYGGVKMASQARQ 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ + + + +E LV+DEADRMLDMGFI IQ I + Sbjct: 121 LEAGVDILVATPGRLQELMEMNMVSLAQVEYLVLDEADRMLDMGFIGDIQRIRDQIKLPH 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT ++++++ L+ PK + V + TAET+ H F +K LL +L Sbjct: 181 QTMLFSATYPPKMKQLAAELLKKPKMVSVGEENRTAETVAHVFYPV--DEDRKIELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K++ + L G + HG+ Q +R + L FKEG +++ Sbjct: 239 I-GRKNWQQVLVFVNYKEHADAIAEELNNDGLTTGVCHGDRSQGNRRRALKEFKEGKLRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV N+D+P AE+Y+HRIGRTGRAG G A +LV +ED Sbjct: 298 LVATDVAARGLDIQGLPHVVNYDLPFLAEDYVHRIGRTGRAGLQGHAVSLVGREDELTAV 357 Query: 359 AIEKLIEKKV 368 IE+LI +++ Sbjct: 358 QIERLIGQRI 367 >gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R] Length = 427 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 231/368 (62%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ ++IP++LQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R + + L+L PTRELA Q+ ++FE YG+ L A++ GG+ + Q L Sbjct: 61 QKLYKTDHRKGI-KALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALR 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +L+ TPGR+LD ++G + +++++ V+DEADRMLDMGFI I+ I L+P RQT Sbjct: 120 SGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++ ++ + L P+++EV SST + I + + +K LL LL+ Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVY--FVEKKEKKDLLIHLLK 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++++ +IF K L L K G AIHGN Q +R + L+NFK T++ ++ Sbjct: 238 D-TSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356 Query: 361 EKLIEKKV 368 +KLI KK+ Sbjct: 357 QKLIGKKI 364 >gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5] gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5] Length = 552 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 233/369 (63%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG++ ++ A+ +GY PTPIQ + IP L D+ AQTG+GKTA+FV+P+L Sbjct: 40 FTDLGIAKPILTALDRSGYTNPTPIQAQAIPFALAGRDLLLSAQTGSGKTAAFVIPVLDR 99 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L + + ++ + LIL PTRELA QV D+ Y K+ L L+GG P+ Q L++ Sbjct: 100 LSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKK 159 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH N G++ ++++EILV+DEADRMLDMGF I +I P RQT+ Sbjct: 160 GVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPTDRQTI 219 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240 + SAT + K++ +F +NP+R+ + S+ E + +C + K LL +++ Sbjct: 220 MCSATWDGPVGKIAASFTKNPERVSIKVESAHIEEKVYYC-----DDFDHKNRLLDKIVC 274 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD M+ IIF K++ L L++ G +HG++ Q R +I+ + + G ++++V Sbjct: 275 QQD-MEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVKILV 333 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP + HV N+D+P + E+Y+HRIGR GRAGR G A +L + +D ++AI Sbjct: 334 ATDVAARGLDIPAISHVINYDLPRQTEDYVHRIGRCGRAGRTGIAISLCSMDDRPQLNAI 393 Query: 361 EKLIEKKVD 369 + +++K++ Sbjct: 394 NRYLDRKME 402 >gi|83953760|ref|ZP_00962481.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1] gi|83841705|gb|EAP80874.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1] Length = 444 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 158/389 (40%), Positives = 242/389 (62%), Gaps = 15/389 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF +GL ++V A+ + G PTPIQ + IP + DV G+AQTGTGKTA+F +P++ Sbjct: 14 DFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPLVA 73 Query: 62 -ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +LE+ R R R L+L PTRELA Q+ +N + + + L +++GG Q K++ Sbjct: 74 QMLEREARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQIKRM 133 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG D+L+ TPGR+LD +R +L++ LV+DEAD+MLDMGFI ++ I +++P RQ Sbjct: 134 ERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPKERQ 193 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237 T+LFSATM + +++ ++L +P RIEV+ P A+ I E F+A ++K +LL + Sbjct: 194 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAK----AEKKSLLIE 249 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + T + ++F K L L K GF +IHGN Q R + + +FK+G + Sbjct: 250 LL-GKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVT 308 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIPDV HV+N+++PN +NY+HRIGRT RAG+ G A A +++ + Sbjct: 309 VLVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 368 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID 386 I+K ++ + +G P E ID Sbjct: 369 KDIQKTMKISIPVASGR------PWEAID 391 >gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM 17241] gi|167668347|gb|EDS12477.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM 17241] Length = 439 Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 230/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ AV D GYV+P+ IQ + IP L HDV G AQTGTGKTA+F +P+L Sbjct: 19 MKFEELGLIQPILRAVRDEGYVEPSAIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPIL 78 Query: 61 TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L+ A ++ P R L+L PTRELA Q+ D+F+ YG+ L ++ GG+P Q Sbjct: 79 QRLDTQCASIKTPCVIRALVLTPTRELAIQIKDSFQSYGRYMRLRSTVVFGGVPQTPQVD 138 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG D+L+ TPGR+ D +G + ++++ + V+DEADRMLDMGFI ++ + + +P Sbjct: 139 ELRRGVDILVATPGRLNDLIGQGIIDLSSVSVFVLDEADRMLDMGFIHDVERVINHLPNK 198 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL FSATM + + + L +P ++ V SS E IE + K LL Sbjct: 199 RQTLFFSATMPKAIMHLCDRILTDPVKVAVTPVSSPVEAIEQRLY--FVDKPNKRRLLIY 256 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ ++ + ++F K + L K G AIHG+ Q +R + LS FK G I+ Sbjct: 257 LLEDV-SIVSALVFTFTKHGADRVARELVKAGIKAQAIHGDKSQGARQRALSAFKNGDIR 315 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ HVFN+D+PN E Y+HRIGRTGRAG G A + + +++++ Sbjct: 316 VLVATDIAARGIDIDELSHVFNYDLPNIPETYVHRIGRTGRAGLGGIAISFCSIVEMENL 375 Query: 358 DAIEKLIEKKV 368 AIEKLI +K+ Sbjct: 376 HAIEKLIGRKI 386 >gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC0288-04] gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC3059-06] gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CGSP14] gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669] gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus pneumoniae JJA] gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CGSP14] gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC0288-04] gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC3059-06] gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC 700669] gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus pneumoniae JJA] Length = 524 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 152/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRIEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++ Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353 Query: 360 IEKLIEKKVDWL 371 IE L +K++ L Sbjct: 354 IENLTKKRMKGL 365 >gi|212690559|ref|ZP_03298687.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855] gi|212666908|gb|EEB27480.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855] Length = 434 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 154/364 (42%), Positives = 231/364 (63%), Gaps = 4/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ + IP++L+ D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + + LIL PTRELA Q+ +NF++Y K + A++ GG+P +AQ L+ Sbjct: 61 QRLYQSDHK-KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG VLI TPGR+LD ++G + + +E V+DEADRMLDMGFI I+ + L+P RQT Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++++ L NPK++EV SST +TI+ + Y K+ L L Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQ---SVYFVEKKEKKDLLLHLL 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ +IF K L L K AIHGN Q +R + L+NFK+ T ++++ Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN +E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356 Query: 361 EKLI 364 +KLI Sbjct: 357 QKLI 360 >gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM 6242] gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242] Length = 463 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 224/371 (60%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L + A+ + GY PTPIQ +IP +L D+ GIAQTGTGKTA+F+LP+L Sbjct: 1 MSFDNLNLIFPLQRALTEEGYTSPTPIQELSIPHLLDNRDMIGIAQTGTGKTAAFILPIL 60 Query: 61 TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + +A + PR L+L PTRELAAQ+ ++F YGK ++ GG+ Q + Sbjct: 61 QNMSAIHKKATPKKPRVLVLAPTRELAAQIGESFATYGKYTRYKHTVVFGGVGQTPQVRA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D L+ TPGR+LD +G + ++N+E V+DEADRMLDMGF+ + I ++P R Sbjct: 121 LSRGVDCLVATPGRLLDLIQQGHIKLSNVEYFVLDEADRMLDMGFLNDVNKIVDMLPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM+ E+ ++ L NP ++EV ++T E IE + K LL L Sbjct: 181 QSLFFSATMSPEISTLARKMLSNPAQVEVTPQATTVERIEQFIF--FVDSDNKNELLLHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + + ++F K + L K + AIHG+ Q R K L NFK G +++ Sbjct: 239 LRGEH-LDCVLVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRTKTLQNFKSGQLRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI D+ HV N+D+PN E+Y+HRIGRT RAG G A++ A ++ + Sbjct: 298 LVATDIAARGIDIEDISHVINYDLPNIPESYVHRIGRTARAGAEGTAYSFCAADERDFLR 357 Query: 359 AIEKLIEKKVD 369 IEKL + +++ Sbjct: 358 DIEKLTDMEIE 368 >gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera genomosp. type_1 str. 28L] Length = 520 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 231/368 (62%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L +S ++ A+ G+ +PTPIQ ++IP+ LQ D+ G AQTGTGKTA+F +P+L Sbjct: 5 FQNLKISEVILQALNAMGFEEPTPIQAESIPVALQGADMIGQAQTGTGKTAAFGIPVLEK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + K + +T++L PTRELA QVA+ + + + GG E Q ++L + Sbjct: 65 ILKNEP-TQSIQTVVLSPTRELAMQVAEELNHLAQCTTIQALPIYGGQDMERQLRRLRKH 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH RG + +++I +V+DEAD MLDMGFI I I S P TRQTLL Sbjct: 124 PQIIVATPGRLMDHMKRGTIDLSDIHTIVLDEADEMLDMGFIDDINTIMSATPDTRQTLL 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT--YAQYSKKCALLQQLLQ 240 FSATM +Q+++E FL P+ I + T + IE ++ T ++ C LL LQ Sbjct: 184 FSATMPKPIQQLAETFLHEPQIIRMKAKEVTMDLIEQSYIETPDRQKFDVLCRLLD--LQ 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D IIF K+ V + +L+K+G+S IHG++ Q R ++ F+E TI ++V Sbjct: 242 EPDL---AIIFVRTKRRVDEVAEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HVFN+D+P E+Y+HR+GRTGRAG+ G+A T V +++H+ AI Sbjct: 299 ATDVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKSGEATTFVIPREMEHLRAI 358 Query: 361 EKLIEKKV 368 E+LI++ + Sbjct: 359 ERLIKRHI 366 >gi|94498979|ref|ZP_01305517.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65] gi|94428611|gb|EAT13583.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65] Length = 457 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 152/374 (40%), Positives = 224/374 (59%), Gaps = 5/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ +V A+ + GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MQFTDLALAEPIVKAIAEQGYTSPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPIL 60 Query: 61 TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L V+ R L+L PTRELAAQV DN Y K + ++ GG+ Q ++ Sbjct: 61 QKLLDAPKGVKPNQARVLVLTPTRELAAQVQDNVATYSKYTKIRSEVVFGGVKINPQMQR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD N+ + + ++ L++DEADRMLDMGFI I+ I L+P R Sbjct: 121 LRRGVDILVATPGRLLDLHNQNAIHFDQLDTLILDEADRMLDMGFINDIRKIMRLLPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q L+FSAT +D+++ +++ ++NP + V ++TA+ + +A +K LL L Sbjct: 181 QNLMFSATFSDKIRALAKTIVENPVEVSVTPKNTTAKKVRQSIIAV--DKKQKINLLIDL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +++ ++F K + L AIHGN Q +R + L++FK IQ+ Sbjct: 239 L-AKEKWHQVLVFSRTKHGANKIAKQLSDADIPAAAIHGNKSQGARTRALADFKSNDIQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NFD+PN AENY+HRIGRT RAG G A + V+ ++I + Sbjct: 298 LVATDIAARGIDIDQLPHVINFDLPNVAENYVHRIGRTARAGSDGDALSFVSIDEIDLLA 357 Query: 359 AIEKLIEKKVDWLN 372 I+ I + ++ L+ Sbjct: 358 DIQNFIGEPIERLD 371 >gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 518 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS +++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFDLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP +RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPDSRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T + ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|71275478|ref|ZP_00651764.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Dixon] gi|71900655|ref|ZP_00682780.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|170729397|ref|YP_001774830.1| ATP-dependent RNA helicase [Xylella fastidiosa M12] gi|71163778|gb|EAO13494.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Dixon] gi|71729590|gb|EAO31696.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|167964190|gb|ACA11200.1| ATP-dependent RNA helicase [Xylella fastidiosa M12] Length = 446 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 231/372 (62%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LGL P ++ A+ + GY PTPIQ + IPL L HD+ AQTGTGKTA+F LP+L Sbjct: 1 MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL 60 Query: 61 TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + V PR L+L PTRELA QV D+ Y K ++ A++ GG+ Q Sbjct: 61 QRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDV 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-T 177 L RG D+LI PGR++DH R + ++ + ILV+DEADRMLDMGF+ I+ I +P Sbjct: 121 LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLHSIKRILGKLPRQN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + +++++ F+ P+ + V + ++ AETI H S+K LL Sbjct: 181 RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPV--DVSRKRELLLY 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL +QD+ + ++F K L LEK G AIHGN Q R++ L++FK G + Sbjct: 239 LL-AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVT 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGR G G+A +LV +ED K + Sbjct: 298 VLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLL 357 Query: 358 DAIEKLIEKKVD 369 I +L+++ +D Sbjct: 358 RQIVRLLDRDMD 369 >gi|265754229|ref|ZP_06089418.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA] gi|263234938|gb|EEZ20493.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA] Length = 434 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 154/364 (42%), Positives = 231/364 (63%), Gaps = 4/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ + IP++L+ D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + + LIL PTRELA Q+ +NF++Y K + A++ GG+P +AQ L+ Sbjct: 61 QRLYQSDHK-KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG VLI TPGR+LD ++G + + +E V+DEADRMLDMGFI I+ + L+P RQT Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++++ L NPK++EV SST +TI+ + Y K+ L L Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQ---SVYFVEKKEKKDLLLHLL 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ +IF K L L K AIHGN Q +R + L+NFK+ T ++++ Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN +E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356 Query: 361 EKLI 364 +KLI Sbjct: 357 QKLI 360 >gi|237725257|ref|ZP_04555738.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D4] gi|229436523|gb|EEO46600.1| ATP-dependent RNA helicase DeaD [Bacteroides dorei 5_1_36/D4] Length = 434 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 154/364 (42%), Positives = 231/364 (63%), Gaps = 4/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ + IP++L+ D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + + LIL PTRELA Q+ +NF++Y K + A++ GG+P +AQ L+ Sbjct: 61 QRLYQSDHK-KGIKALILTPTRELAIQIGENFDQYAKYAGVKHAVIFGGVPQKAQVDALK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG VLI TPGR+LD ++G + + +E V+DEADRMLDMGFI I+ + L+P RQT Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++++ L NPK++EV SST +TI+ + Y K+ L L Sbjct: 180 LFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQ---SVYFVEKKEKKDLLLHLL 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ +IF K L L K AIHGN Q +R + L+NFK+ T ++++ Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN +E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356 Query: 361 EKLI 364 +KLI Sbjct: 357 QKLI 360 >gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein [Photobacterium sp. SKA34] gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein [Photobacterium sp. SKA34] Length = 427 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 160/389 (41%), Positives = 229/389 (58%), Gaps = 19/389 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L P ++ A+ D GY PT +Q + IPL L+ DV AQTGTGKTA+F LP+L Sbjct: 1 MSFQSLNLHPNLLKALTDLGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFTLPLL 60 Query: 61 --------------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106 T +E + R LIL PTRELA QV D+ Y K + VA+ Sbjct: 61 QRLMTLPSQAEQVSTAVENNQKSRNKIRALILTPTRELAQQVFDSITTYAKYTEIKVAVA 120 Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166 GG Q K L GA++L+ TPGR+LDH G + ++ +E V+DEADRMLDMGFI Sbjct: 121 YGGTSMNVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVD 180 Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 IQ I +P RQTL FSAT + +++K++ + L NPK +EV ++ AET+E Sbjct: 181 IQRIMKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQIVYPV-- 238 Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 +K LL L+ S++ + ++F K+ L L G +I+G+ Q +R + Sbjct: 239 DKHRKAELLAYLIGSRN-WRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQR 297 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L +FK G +++VA+D+AARGLDI + +V NFD+P +AE+Y+HRIGRTGRAG G A Sbjct: 298 ALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAI 357 Query: 347 TLVAKEDIKHIDAIEKLIEKKV--DWLNG 373 TL++ ++ + AIE+L++ ++ WL G Sbjct: 358 TLMSLDEEWALKAIEELLDSRLPQQWLEG 386 >gi|83942539|ref|ZP_00955000.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36] gi|83846632|gb|EAP84508.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36] Length = 433 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 158/389 (40%), Positives = 242/389 (62%), Gaps = 15/389 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF +GL ++V A+ + G PTPIQ + IP + DV G+AQTGTGKTA+F +P++ Sbjct: 3 DFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPLVA 62 Query: 62 -ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +LE+ R R R L+L PTRELA Q+ +N + + + L +++GG Q K++ Sbjct: 63 QMLEREARPEPRTVRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQIKRM 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG D+L+ TPGR+LD +R +L++ LV+DEAD+MLDMGFI ++ I +++P RQ Sbjct: 123 ERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPKERQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237 T+LFSATM + +++ ++L +P RIEV+ P A+ I E F+A ++K +LL + Sbjct: 183 TMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAK----AEKKSLLIE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + T + ++F K L L K GF +IHGN Q R + + +FK+G + Sbjct: 239 LL-GKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVT 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIPDV HV+N+++PN +NY+HRIGRT RAG+ G A A +++ + Sbjct: 298 VLVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGEL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID 386 I+K ++ + +G P E ID Sbjct: 358 KDIQKTMKISIPVASGR------PWEAID 380 >gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA17545] Length = 524 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 151/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++ Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQI 353 Query: 360 IEKLIEKKVDWL 371 IE L +K++ L Sbjct: 354 IENLTKKRMKGL 365 >gi|254509500|ref|ZP_05121567.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium KLH11] gi|221533211|gb|EEE36199.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium KLH11] Length = 419 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 156/404 (38%), Positives = 241/404 (59%), Gaps = 8/404 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL+P + A+ A + +PTPIQ + IPL L HD+ G+AQTGTGKT +F LP++ Sbjct: 3 DFDMLGLAPALNDALKRANFTQPTPIQNQAIPLALNGHDILGLAQTGTGKTLAFGLPLID 62 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + G+ + + LIL PTREL Q+AD+ K L VA ++GG Q L Sbjct: 63 HLLAQPGKPAPKTAKALILAPTRELVNQIADSLRGLTKKTKLRVATVVGGQSINKQIMFL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR++D RG + ++++ LV+DEAD+MLDMGFI ++ I + RQ Sbjct: 123 SRGTDILVATPGRLIDLMERGAVDLSSVRHLVLDEADQMLDMGFIHALRRIAPELGTPRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM +++++S +L NP+R++V+ P A+ I + + K A L+++L Sbjct: 183 TMLFSATMPKQMEELSRAYLTNPQRVQVSPPGKAADKITQSI--HFVEKPAKPAKLREIL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S D ++F K L L G++ +IHGN Q R + + F+ G I ++ Sbjct: 241 -SADMDALTLVFSRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP V +V N+D+P +NY+HRIGRT RAGR G+A + E++ + Sbjct: 300 VATDVAARGIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAIAFCSAEEVDLLRQ 359 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403 I+KL++ ++ +G++ P + A+ + R+ P PQ S Sbjct: 360 IQKLMKIEIPVASGEMPEAVAPKKP---ARRQNNRRRGPKPQHS 400 >gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC 6249] gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC 6249] Length = 525 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +++IE L++DEAD ML+MGF+ I+ I S VP +RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPESRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563] gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563] Length = 509 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 157/382 (41%), Positives = 236/382 (61%), Gaps = 16/382 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F ++ LS ++ A+ + G+ + TPIQ +TIP+ L+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMALEGKDVFGQAQTGTGKTAAFGLPLL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + E G + LI+EPTRELA Q + + GK + + GG Q K L Sbjct: 61 EKVHETGGVQA-----LIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIKLL 115 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++ V+I TPGRILD RG L +NN+E LV+DEAD ML MGF+ I++I +P RQ Sbjct: 116 KKNPPVVIGTPGRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRELPTERQ 175 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT+ E++++++NF+ +P + V T TA+ I+ + + + +K LL + + Sbjct: 176 TLLFSATVPQEIKRIADNFMNDPATVHVKTKQMTADLIDQYY--SRCKDYEKFDLLTRFI 233 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q+ + I+F K+ V + L ++G+S IHG++ Q R+ +L NFK G + ++ Sbjct: 234 DVQNP-ELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDIL 292 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G + T V ++ ++ Sbjct: 293 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVTFVTSNEMSYLRT 352 Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381 IE L +K+ +S+L PP Sbjct: 353 IEDLTKKQ-------MSALRPP 367 >gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367] gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367] Length = 523 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 145/365 (39%), Positives = 230/365 (63%), Gaps = 10/365 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS ++ A+ GY + TPIQ +TIP+VL DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFKELGLSEDLLKAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++K V+ L++ PTRELA Q + K G+ V ++ GG Q K L+ Sbjct: 61 EKIDKSNENVQ---ALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIKSLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR+LDH R L ++++++LV+DEAD ML+MGF+ I++I +P RQT Sbjct: 118 NHPQVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT--YAQYSKKCALLQQL 238 +LFSATM E+++V F+++PK +++ T + I+ +V + + ++ Sbjct: 178 MLFSATMPPEIKRVGVQFMKDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTRFFD-- 235 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +QS D I+F K+ V + LE +G++ IHG++ Q+ R +I+++F+ G + + Sbjct: 236 VQSPDLT---IVFTRTKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDI 292 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV HV+N+D+P ++Y+HR+GRTGRAG+HG + T V ++ ++ Sbjct: 293 LVATDVAARGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLR 352 Query: 359 AIEKL 363 IEKL Sbjct: 353 EIEKL 357 >gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087] Length = 523 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ KTIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] Length = 460 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 156/367 (42%), Positives = 233/367 (63%), Gaps = 9/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59 FA+LGL+P ++ A+ + GYV PTPIQ + IP LQ D+ G AQTGTGKTA+F LP+ Sbjct: 4 FAELGLAPDILRALDEMGYVSPTPIQAQVIPRALQGGDILGAAQTGTGKTAAFALPLIQR 63 Query: 60 -LTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + P R LIL PTRELA QV + + Y K+ L ++ GG+ Q Sbjct: 64 LLPFANTSTSPAKHPIRALILTPTRELAIQVEEAIQAYTKHVPLRSLVVYGGVNINTQIP 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ G ++L+ TPGR+LDH L++ + LV+DEADRMLDMGF+P ++ I +L+P Sbjct: 124 ILKTGVEILVATPGRLLDHVQNKTLMLTQVNTLVLDEADRMLDMGFMPDLRRIVALLPAQ 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R ++FSAT +E++K++++ L P IEV + TA T+ V + +K LL Sbjct: 184 RVNMMFSATFPEEIRKLADSILSTPTFIEVAR-NETAVTVTQ--VVHPVHHERKRQLLAH 240 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S+D ++ ++F K L + L K G AIHG+ Q+ R+K L FK GTI+ Sbjct: 241 LIKSRD-LRQVLVFTGTKLGCNRLANELNKAGIHADAIHGDKTQQERIKALDAFKAGTIR 299 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + V N+D+P+ AE+Y+HRIGRTGRAG G+A +LV++ + +++ Sbjct: 300 VLVATDVAARGIDIEALPFVVNYDLPHNAEDYVHRIGRTGRAGAKGEAISLVSEAETRYL 359 Query: 358 DAIEKLI 364 IE+LI Sbjct: 360 KDIERLI 366 >gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219] gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219] Length = 425 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 167/417 (40%), Positives = 249/417 (59%), Gaps = 19/417 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + L ++ ++ A Y KP+PIQ K IP++L+ D+ AQTGTGKTA+F LP+L Sbjct: 1 MTFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K + R LIL PTRELA Q+ +N + +G+ +L + GG P Q K + Sbjct: 61 NSLSKEKNH--SIRALILTPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLKAIR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+LD+ GK+ + +IE LV+DEADRMLDMGFI ++ I +P R T Sbjct: 119 SGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRIT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+Q+++ + L+NPK + + TA TI+ + Y + S K +L LL Sbjct: 179 ALFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLI--YTEKSSKKKVLVNLLN 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +++K I+F K L L+++ + IHG+ Q R+ L F+ I++++ Sbjct: 237 T-ESIKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILI 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI D+ HV NFD+P ENY+HRIGRTGRA + G + +LV KE++ + I Sbjct: 296 ATDVAARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 E I+ ++ L +L SL PLE+ +K K+T R+K+ +S+QK Sbjct: 356 ESYIQFQIP-LKQNLYSL--PLER--------KKKRKSSIHKTT---RKKERFSNQK 398 >gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7] gi|89517223|gb|EAS19880.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7] Length = 425 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 156/373 (41%), Positives = 234/373 (62%), Gaps = 11/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ A+ D GY PTPIQ ++IP++L+ D+ G+AQTGTGKTA+F +P+L Sbjct: 1 MTFKELGLVEPILRALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPIL 60 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L KGR R + L++ PTRELA Q+ +NF+ Y K ++ ++ GG+ Q Sbjct: 61 QHLYNSAPPKGR---RSIKALVVTPTRELAIQIDENFKAYAKYTDIRNTVIYGGVKQAQQ 117 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L+ G DVL+ TPGR+LD N+G + + +IE V+DEAD+MLDMGFI I+ + L+P Sbjct: 118 VNRLKSGIDVLVATPGRLLDLINQGFITLKHIEYFVLDEADQMLDMGFIHDIKKLLKLLP 177 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ+L FSATM + ++S L + +R+ + +TAE +E + K LL Sbjct: 178 HERQSLFFSATMPKTIVELSRQILGDFERVTIAPEKTTAEKVEQQIY--HVNKKNKTKLL 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +LL+++ + + ++F K + LEK G AIHGN Q +R + L FKEG Sbjct: 236 IELLETK-LLDSTLVFSRTKHGANKIVKDLEKAGIGSAAIHGNKSQAARQRALGAFKEGK 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 IQ +VA+D+AARG+DI ++ +V N+D+PN AE+Y+HRIGRTGRAG G A + E+ Sbjct: 295 IQTLVATDIAARGIDIDELSYVVNYDLPNVAESYVHRIGRTGRAGASGLAVSFCMLEERP 354 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++++ Sbjct: 355 FLKDIEKLIKQQI 367 >gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. novicida GA99-3549] gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549] Length = 442 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 152/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLI 364 IE LI Sbjct: 358 IEHLI 362 >gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786 str. D14] gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786 str. D14] Length = 410 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 230/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L P ++ A+ Y PTPIQ + IP +L D+ G AQTGTGKTA+F +P L Sbjct: 1 MQFKELNLIPSILKALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTL 60 Query: 61 TILEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L K RA R R L++ PTRELA Q+ +NF YGK L A++ GG+ + Q Sbjct: 61 QLLHKDGAPRAGRRNIRALVITPTRELALQIYENFCAYGKYLPLKCAVIFGGVSQKPQEA 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+L+ TPGR+ D + + + N+E+L++DEADRMLDMGFI ++ I + P Sbjct: 121 ALQKGVDILVATPGRLNDLMQQKLIDLKNVELLILDEADRMLDMGFIHDVKKIIAKTPSQ 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM D + +++++ L+NP ++E+ SST +TI Y K LL Sbjct: 181 RQTLLFSATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLY--YVDKGNKRDLLIH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ ++++ I+F K L L K S AIHG+ Q +R L +FK T++ Sbjct: 239 LLKD-PSIESAIVFTRTKHGADRLVRHLTKAQVSAKAIHGDKSQGARQTALQDFKNRTLR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ HV N+++PN E Y+HRIGRTGRAG+ G A + ++ ++ Sbjct: 298 VLVATDIAARGIDIDELSHVINYELPNIPETYVHRIGRTGRAGQSGVAISFCDFDEKPYL 357 Query: 358 DAIEKLIEKKV 368 IEKLI K++ Sbjct: 358 ADIEKLIGKRI 368 >gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium TX1330] gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733] gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408] gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1] gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium TX1330] gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733] gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408] gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1] Length = 503 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 237/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LSP+++ +V AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R ++ L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 61 EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + ++ LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F+++P +++ TA+ I+ +V A+ +K ++ +L Sbjct: 178 LLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVR--AKEYEKFDIMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ +++L PP EK Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371 >gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby] gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99 Alcoy] gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby] gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99 Alcoy] Length = 589 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 232/369 (62%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ S + A+ D ++ P+PIQ +TIPL+LQ D +AQTGTGKTA+F LP+L Sbjct: 7 NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 L + + LIL PTRELA QVA+ FE K N+T+A+L GG + Q K+L Sbjct: 67 NLS---PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGRILDH ++G LL+NN++ ++DEAD ML MGFI ++ I +P +Q Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++++ +L +P IE+ ++T ++IE F+ +A +K L ++L+ Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFL--FASVHQKPDALIRVLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + I+F K + + L++ G AIHG+I Q R +I++ FK+G I ++V Sbjct: 242 VED-YQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV N+D+P+ E Y+HRIGRTGRAGR G V ++ + I +I Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360 Query: 361 EKLIEKKVD 369 E+ ++++ Sbjct: 361 ERHTRQRIE 369 >gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. Y412MC10] gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5] gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10] gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5] Length = 533 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 232/367 (63%), Gaps = 6/367 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FAD GL P+V+ A+ + G+ + TPIQ ++IP+ L D+ G AQTGTGKTA+F LP++ Sbjct: 3 NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIH 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + K R+ LI+ PTRELA QVA+ K + + + GG Q + L+R Sbjct: 63 KIAKEEERIV---ALIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKR 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR+LDH NR + +++++ +V+DEAD MLDMGF+ IQ+I LVP RQTL Sbjct: 120 KPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +QK++ FL+ P+ + V +A I+ ++ + +K L +LL Sbjct: 180 LFSATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEVPER--QKFEALSRLL-D 236 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + I+F K+ V L +L+K+G+S +HG++ Q R ++ F++G+I ++VA Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ V HV NFD+P E+Y+HRIGRTGRAG+ G A++ V ++ H+ IE Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIE 356 Query: 362 KLIEKKV 368 ++ ++ Sbjct: 357 RVTRHRI 363 >gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70] gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70] Length = 466 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 155/369 (42%), Positives = 233/369 (63%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +++ A+ G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F +P++ Sbjct: 4 FHELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLI-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK + + L++ PTRELA QV++ K G + V + GG E Q + L++ Sbjct: 62 -EKVDVKNEAIQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRI+DH NR L ++N+ +V+DEAD ML+MGFI I+ I S VP RQTLL Sbjct: 121 PHIIVGTPGRIIDHINRKTLRLDNVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + +++++E F+ P ++V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPEPIRRIAERFMNEPHIVKVKAKEMTVPNIQQYYLE--VQEKKKFDILTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G++ IHG++ Q R+ +L FKEG+I+++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V +I + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIER 357 Query: 363 LIEKKVDWL 371 ++K++ + Sbjct: 358 TTKRKMERM 366 >gi|149177361|ref|ZP_01855966.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797] gi|148843886|gb|EDL58244.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797] Length = 606 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 152/378 (40%), Positives = 238/378 (62%), Gaps = 9/378 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L ++ +++ GY PTPIQ +TIP +L+ D+ G AQTGTGKTA+F LP+L+ Sbjct: 11 FTDLELCQPILDVLVELGYDTPTPIQAQTIPHLLEGRDLVGQAQTGTGKTAAFALPLLSK 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QV ++F++YG L V + GG F+ Q + L+R Sbjct: 71 ID---LELRAPQVLVLAPTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKGQLQPLKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L ++N+ LV+DEAD ML MGFI ++ I P QT Sbjct: 128 GVHVVVGTPGRVMDHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQTPDNHQTA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ N+L++P+ I V + TA+TI + A+ K L ++L++ Sbjct: 188 LFSATMPEAIRRIAGNYLKSPQEITVKDKTRTADTIRQRYW--LAKGHHKLDALTRILEA 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T IIF K L LE +GF ++G+I Q+ R + + K G + +++A Sbjct: 246 EET-DGVIIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVNIVIA 304 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P +E Y+HRIGRTGRAGR G+A V+ + + + IE Sbjct: 305 TDVAARGLDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAIMFVSPREQRSLSGIE 364 Query: 362 KLIEKKVDWLNGDLSSLN 379 + I+ K++ + +L S+N Sbjct: 365 RAIKLKIERM--ELPSIN 380 >gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris NZ9000] Length = 551 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 156/381 (40%), Positives = 236/381 (61%), Gaps = 13/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS +V + + GY +PTPIQ +TI L L+ DV G AQTGTGKTA+F LP Sbjct: 1 MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +EK A + L++ PTRELA Q + ++GK+ L V + GG E Q K L+ Sbjct: 59 -TIEKINAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR++D R + ++ +E L++DEAD ML+MGF+ I I P RQT Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++K+ F++NP+ I++ TA+ I+ FV T + +K +L +LL Sbjct: 178 LLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKT--KEFEKFDVLTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +G+ +HG++DQ R+ +L +FK G I ++V Sbjct: 236 VERP-ELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ AI Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 EKL N ++ L PP Sbjct: 355 EKLT-------NKEMKGLKPP 368 >gi|290580897|ref|YP_003485289.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025] gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025] Length = 517 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 236/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ ++ AV G+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 NKIDVINNVVQ---ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N++E L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T + ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIVAKELTTDLVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +G+ IHG++DQ R+++L +FK + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+HG++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 EKL +K++ + Sbjct: 355 EKLTKKRMKGM 365 >gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b] Length = 589 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 232/369 (62%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ S + A+ D ++ P+PIQ +TIPL+LQ D +AQTGTGKTA+F LP+L Sbjct: 7 NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 L + + LIL PTRELA QVA+ FE K N+T+A+L GG + Q K+L Sbjct: 67 NLS---PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGRILDH ++G LL+NN++ ++DEAD ML MGFI ++ I +P +Q Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++++ +L +P IE+ ++T ++IE F+ +A +K L ++L+ Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFL--FASVHQKPDALIRVLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + I+F K + + L++ G AIHG+I Q R +I++ FK+G I ++V Sbjct: 242 VED-YQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV N+D+P+ E Y+HRIGRTGRAGR G V ++ + I +I Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360 Query: 361 EKLIEKKVD 369 E+ ++++ Sbjct: 361 ERHTRQRIE 369 >gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684] gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM 14684] Length = 590 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 156/394 (39%), Positives = 236/394 (59%), Gaps = 15/394 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L +++ A+ GY +PTPIQ + IP +L+ D+ G A TGTGKTA+F LP+L Sbjct: 17 FADLALRRELLDALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPILQR 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E GR+ + P L+L PTRELA QV++ +YG++ V + GG P Q L+RG Sbjct: 77 MEPGRSAI-GPLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNALKRG 135 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTL 181 DV++ TPGR+LDH +R L ++ + I+V+DEAD MLDMGF I++I + P RQT+ Sbjct: 136 VDVVVGTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGRQTV 195 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ L +P RIE+ +S +T A + K A L ++L Sbjct: 196 LFSATMPPRIDRIARAHLSDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRVLDV 255 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+FC + V L +L +G+ A+HG + Q R ++++ + GT L+VA Sbjct: 256 E-SPTAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADLLVA 314 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+DVP+ E+Y+HRIGR GRAGR G A TL + +++ IE Sbjct: 315 TDVAARGLDVEQLTHVVNYDVPSSPESYVHRIGRVGRAGREGAAITLAEPREHRYLKTIE 374 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 ++ ++++ +EKI HARK Sbjct: 375 RVTKQRI------------AIEKIPTVADLHARK 396 >gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 515] gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 515] Length = 528 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++ LI+ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 NKIHTEDNTIQ---ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGR+LD R L +N+IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEARQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++NP+ +++ T ++ +V + ++K + +L+ Sbjct: 178 LLFSATMPDPIKRIGVKFMKNPEHVKIKATELTNVNVDQYYV--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ + Sbjct: 355 ENLTKKRMTGM 365 >gi|241895833|ref|ZP_04783129.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella paramesenteroides ATCC 33313] gi|241870876|gb|EER74627.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella paramesenteroides ATCC 33313] Length = 512 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ GYV+ TPIQ KTIPL + DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLTQDLLTAIEKHGYVEATPIQEKTIPLTMAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ V+ L++ PTRELA Q D K G++ ++ V + GG Q L Sbjct: 61 EMIDNENKDVQ---ALVVSPTRELAIQTQDELFKLGRDKHVRVQAVFGGADIRRQINGLN 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR++DH RG + +++++ LV+DEAD ML+MGF+ I++I VP RQT Sbjct: 118 HGAHIVVGTPGRLIDHIRRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+ NP+ I++ T + ++ +V + +K +L ++L Sbjct: 178 LLFSATMPPAIKRIGVQFMTNPEHIQIAAKELTTDLVDQYYV--RVRDFEKFDVLTRILD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F K+ V L L +GF IHG++ Q+ R ++L FK I+++V Sbjct: 236 VQQP-ELAIMFGRTKRRVDELTRGLTLRGFKAAGIHGDLTQQKRTQVLKQFKNREIKILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V +V+NFD+P +E+Y+HRIGRTGRAG HG + T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTYVYNFDIPQDSESYVHRIGRTGRAGAHGNSVTFVSNSEMDYLKDI 354 Query: 361 EKLIEKKVDWL 371 EKL +K++ L Sbjct: 355 EKLTKKRMQPL 365 >gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG] gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG] Length = 441 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 152/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLI 364 IE LI Sbjct: 358 IEHLI 362 >gi|21957415|gb|AAM84284.1|AE013672_2 inducible ATP-independent RNA helicase [Yersinia pestis KIM 10] gi|45435306|gb|AAS60865.1| inducible ATP-independent RNA helicase [Yersinia pestis biovar Microtus str. 91001] Length = 669 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 151/379 (39%), Positives = 238/379 (62%), Gaps = 9/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 14 FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 + +A ++ P+ L+L PTRELA QVA+ + K+ N + V L GG ++ Q + L + Sbjct: 74 I---KADLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQLRALRQ 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 131 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Y K AL+ + L++ Sbjct: 191 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALV-RFLEA 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 250 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 309 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIE 368 Query: 362 ---KLIEKKVDWLNGDLSS 377 KL +V+ N DL S Sbjct: 369 RTMKLTIPEVELPNADLLS 387 >gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris SK11] gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp. cremoris SK11] Length = 551 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 156/381 (40%), Positives = 236/381 (61%), Gaps = 13/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS +V + + GY +PTPIQ +TI L L+ DV G AQTGTGKTA+F LP Sbjct: 1 MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +EK A + L++ PTRELA Q + ++GK+ L V + GG E Q K L+ Sbjct: 59 -TIEKINAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR++D R + ++ +E L++DEAD ML+MGF+ I I P RQT Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++K+ F++NP+ I++ TA+ I+ FV T + +K +L +LL Sbjct: 178 LLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKT--KEFEKFDVLTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +G+ +HG++DQ R+ +L +FK G I ++V Sbjct: 236 VERP-QLAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ AI Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 EKL N ++ L PP Sbjct: 355 EKLT-------NKEMKGLKPP 368 >gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B] gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141] gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B] Length = 524 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 151/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++ Sbjct: 236 VAQPEL--AIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQI 353 Query: 360 IEKLIEKKVDWL 371 IE L +K++ L Sbjct: 354 IENLTKKRMKGL 365 >gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 530 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 229/368 (62%), Gaps = 7/368 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +GL ++ + + G+ KPTPIQ+K+IP+ + D+ G AQTGTGKTASF +P+L Sbjct: 5 NFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPILN 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + KG + L+L PTRELA QV + + + V + GG E Q + L R Sbjct: 65 RVIKGEGL----QALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLRSLRR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++++ TPGR++DH NRG + ++ ++ +V+DEAD MLDMGF+P IQ I S P RQT Sbjct: 121 NPEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTF 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ DE++++ F++ P+ I + +P T IE + ++ +K L +++ + Sbjct: 181 LFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSR--RKIETLCRIIDA 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q +IFC K+N L L +G++ A+HG++ QR R ++ F++G +++VA Sbjct: 239 QQP-PISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +DLAARGLDI V HVFNFD+P ++YIHR+GRTGRAGR G A TLV I+ + IE Sbjct: 298 TDLAARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIE 357 Query: 362 KLIEKKVD 369 + K+++ Sbjct: 358 RHTGKRIE 365 >gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 659 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 152/366 (41%), Positives = 218/366 (59%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+P++ A+ + GY +P+PIQ + IP ++ D+ G A TGTGKTA+F LPML Sbjct: 92 FADLGLAPELQRALDELGYERPSPIQAEAIPSLIDGRDLIGQAATGTGKTAAFALPMLQR 151 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R +R P L+L PTRELA QV + +YGK V + GG P Q L+ Sbjct: 152 LAQERRGSRGTAPLGLVLAPTRELAMQVTEAIARYGKGLRARVLAVYGGAPIGPQLGALK 211 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR +D NRG L ++ +E++V+DEAD MLDMGF+ I+ I P TRQ Sbjct: 212 RGVDVVVATPGRAIDLINRGALSLDELEVVVLDEADEMLDMGFVEDIETILQATPDTRQA 271 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +LFSATM ++ ++ +L +P + + P A + A S A L + Sbjct: 272 VLFSATMPRRIEVLARTYLTDPVLVRIQREEVPEGEAPRVRQT--AYMVPRSHTTAALGR 329 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ + I+FC + +V + +L +G A+HG +DQ R +++ + G Sbjct: 330 ILELERPTA-AIVFCRTRADVDAVTEALTGRGLRAEALHGGMDQEHRTRVVDRLRNGRTD 388 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+VA+D+AARGLDI + HV N DVP E+Y+HRIGR GRAGR G A TLVA ++H+ Sbjct: 389 LLVATDVAARGLDIDQLTHVVNHDVPKSPESYVHRIGRVGRAGREGVAITLVAPASVRHL 448 Query: 358 DAIEKL 363 IE+L Sbjct: 449 RNIERL 454 >gi|22536941|ref|NP_687792.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae 2603V/R] gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 2603V/R] Length = 528 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++ LI+ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 NKIHTEDNTIQ---ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGR+LD R L +N+IE L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ +V + ++K + +L+ Sbjct: 178 LLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYV--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ + Sbjct: 355 ENLTKKRMTGM 365 >gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens] gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens] Length = 589 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 232/369 (62%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ S + A+ D ++ P+PIQ +TIPL+LQ D +AQTGTGKTA+F LP+L Sbjct: 7 NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 L + + LIL PTRELA QVA+ FE K N+T+A+L GG + Q K+L Sbjct: 67 NLS---PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGRILDH ++G LL+NN++ ++DEAD ML MGFI ++ I +P +Q Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++++ +L +P IE+ ++T ++IE F+ +A +K L ++L+ Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFL--FASVHQKPDALIRVLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + I+F K + + L++ G AIHG+I Q R +I++ FK+G I ++V Sbjct: 242 VED-YQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV N+D+P+ E Y+HRIGRTGRAGR G V ++ + I +I Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360 Query: 361 EKLIEKKVD 369 E+ ++++ Sbjct: 361 ERHTRQRIE 369 >gi|51594838|ref|YP_069029.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP 32953] gi|108808981|ref|YP_652897.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Antiqua] gi|108810764|ref|YP_646531.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Nepal516] gi|145600551|ref|YP_001164627.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Pestoides F] gi|153947592|ref|YP_001402544.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP 31758] gi|153997472|ref|ZP_02022572.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125] gi|161484874|ref|NP_668033.2| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM 10] gi|161511438|ref|NP_991988.2| ATP-dependent RNA helicase DeaD [Yersinia pestis biovar Microtus str. 91001] gi|162420533|ref|YP_001608294.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Angola] gi|165925696|ref|ZP_02221528.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936744|ref|ZP_02225311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. IP275] gi|166010049|ref|ZP_02230947.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. E1979001] gi|166214269|ref|ZP_02240304.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. B42003004] gi|167398750|ref|ZP_02304274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420623|ref|ZP_02312376.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423076|ref|ZP_02314829.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186893847|ref|YP_001870959.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis PB1/+] gi|218930502|ref|YP_002348377.1| ATP-dependent RNA helicase DeaD [Yersinia pestis CO92] gi|229839140|ref|ZP_04459299.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896629|ref|ZP_04511796.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A] gi|229899704|ref|ZP_04514845.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229900962|ref|ZP_04516086.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|270489144|ref|ZP_06206218.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27] gi|294505188|ref|YP_003569250.1| cold-shock dead-box protein A [Yersinia pestis Z176003] gi|51588120|emb|CAH19726.1| cold-shock dead-box protein A [Yersinia pseudotuberculosis IP 32953] gi|108774412|gb|ABG16931.1| cold-shock dead-box protein A [Yersinia pestis Nepal516] gi|108780894|gb|ABG14952.1| cold-shock dead-box protein A [Yersinia pestis Antiqua] gi|115349113|emb|CAL22076.1| cold-shock dead-box protein A [Yersinia pestis CO92] gi|145212247|gb|ABP41654.1| cold-shock dead-box protein A [Yersinia pestis Pestoides F] gi|149289109|gb|EDM39189.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125] gi|152959087|gb|ABS46548.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pseudotuberculosis IP 31758] gi|162353348|gb|ABX87296.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis Angola] gi|165915393|gb|EDR34003.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. IP275] gi|165922308|gb|EDR39485.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990956|gb|EDR43257.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204501|gb|EDR48981.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. B42003004] gi|166961429|gb|EDR57450.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051254|gb|EDR62662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057246|gb|EDR66992.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186696873|gb|ACC87502.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis PB1/+] gi|229682301|gb|EEO78393.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|229687196|gb|EEO79271.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229695506|gb|EEO85553.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700407|gb|EEO88439.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A] gi|262363250|gb|ACY59971.1| cold-shock dead-box protein A [Yersinia pestis D106004] gi|262367181|gb|ACY63738.1| cold-shock dead-box protein A [Yersinia pestis D182038] gi|270337648|gb|EFA48425.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27] gi|294355647|gb|ADE65988.1| cold-shock dead-box protein A [Yersinia pestis Z176003] gi|320016694|gb|ADW00266.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 664 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 151/379 (39%), Positives = 238/379 (62%), Gaps = 9/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 + +A ++ P+ L+L PTRELA QVA+ + K+ N + V L GG ++ Q + L + Sbjct: 69 I---KADLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Y K AL+ + L++ Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALV-RFLEA 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIE 363 Query: 362 ---KLIEKKVDWLNGDLSS 377 KL +V+ N DL S Sbjct: 364 RTMKLTIPEVELPNADLLS 382 >gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359] gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359] Length = 522 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 156/369 (42%), Positives = 232/369 (62%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +L +S ++ A+ D G+ +PTPIQ +IP+ L+ HD+ G AQTGTGKTA++ +P+L Sbjct: 9 FKNLQISDVIINALNDMGFEEPTPIQEGSIPVALEGHDMIGQAQTGTGKTAAYGIPVLEK 68 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 IL G + +++IL PTRELA QVA+ + + + GG E Q ++L + Sbjct: 69 ILAAGAPK--ELQSVILSPTRELAIQVAEEINHLAQYTPVQALPIYGGQDMERQLRRLRK 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR++DH RG + +++I +V+DEAD ML+MGFI I I S P TRQTL Sbjct: 127 SPQIIVATPGRLIDHMKRGTVKLSSISTIVLDEADEMLNMGFIDDINLIMSATPETRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 LFSATM +QK++E FL++P+ I + T + +E + VA ++ C LL L Sbjct: 187 LFSATMPAPIQKLAETFLKDPQIIRMKAKEVTIDLVEQSYIEVADRQKFDVLCRLLD--L 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q D IIF K+ V L L+K+G+S IHG++ Q R ++ F+E TI ++ Sbjct: 245 QEPDL---AIIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREKTIDIL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P E+Y+HR+GRTGRAG+ G+A T V +I H+ Sbjct: 302 VATDVAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREIDHLRT 361 Query: 360 IEKLIEKKV 368 IEKLI+ ++ Sbjct: 362 IEKLIKHRI 370 >gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae NEM316] gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909] gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 18RS21] gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae H36B] gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae CJB111] gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316] gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae A909] gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 18RS21] gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae CJB111] gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae H36B] Length = 528 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++ LI+ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 NKIHTEDNTIQ---ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGR+LD R L +N+IE L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ +V + ++K + +L+ Sbjct: 178 LLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYV--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ + Sbjct: 355 ENLTKKRMTGM 365 >gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1] gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1] Length = 496 Score = 295 bits (755), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 152/372 (40%), Positives = 221/372 (59%), Gaps = 4/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L ++ + AGY PTPIQ + +P V++ HD+ G+AQTGTGKTA+F+LP+L Sbjct: 1 MSFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L AR R PRTLIL PTRELA Q+ + + + L ++ GG+ Q + L Sbjct: 61 HRLITNPARTRSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRALR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DV++ PGR+LDH N+G + + +E LV+DEAD M DMGF+P I+ I + +P RQT Sbjct: 121 QGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ L +P + + + + T+EH +++K LL LL Sbjct: 181 LLFSATMPPAISGLAAETLTDPVTVRIGHLAPLS-TVEHAIYPV--SHNQKAPLLLHLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ I+F K NL L + G + GN+ QR R + F+ G+ Q++V Sbjct: 237 GEAGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV NFD+P+ AE Y HRIGRTGRA R G+A T V ED+ + AI Sbjct: 297 ATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAI 356 Query: 361 EKLIEKKVDWLN 372 E ++K + N Sbjct: 357 ESHMKKPLPRRN 368 >gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548] gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548] Length = 441 Score = 295 bits (755), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 152/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLI 364 IE LI Sbjct: 358 IEHLI 362 >gi|225025644|ref|ZP_03714836.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC 23834] gi|224941594|gb|EEG22803.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC 23834] Length = 466 Score = 295 bits (755), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 240/371 (64%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ D GY +PT IQ IP VL HD+ AQTGTGKTA+F+LP L Sbjct: 5 FTNLGLSAEITAALADQGYEQPTAIQTAAIPKVLAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + P R L+L PTRELA Q+ N Y KN L +L GG+ + Q Sbjct: 65 LRRYATTSTSPAMHPVRMLVLTPTRELADQIDQNTAAYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + ++ +EI+V+DEADRMLDMGFI I+ I L+P Sbjct: 125 DLRAGCEIVVATVGRLLDHVQQKNIRLDKVEIVVLDEADRMLDMGFIDDIRRIMQLLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P++++ ++ + ++E +A ++K LL++ Sbjct: 185 RQTLLFSATFSPPIRKLAQDFMNRPEQVQTAPQNTASASVEQHIIAI--DTAQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + I+FC K++V + L+++G SV IHG+ Q++R++ L+ FK G ++ Sbjct: 243 LIVDLH-INQVIVFCKTKQSVDQVARDLKRRGLSVAPIHGDKSQQTRLETLNAFKAGELR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P +AE+Y+HRIGRTGRAG G A +L+ +++ K Sbjct: 302 VLVATDVAARGLDIAELPFVINYEMPTQAEDYVHRIGRTGRAGAEGVAISLMDEDEQKMF 361 Query: 358 DAIEKLIEKKV 368 +AI++LI K++ Sbjct: 362 EAIKELIGKEL 372 >gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] Length = 463 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 223/368 (60%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ A+ GY PT +Q + IP L D+ + TG+GKTA+F LP L Sbjct: 1 MTFQELGLHEALLQAIATTGYTVPTSVQEQAIPAALAGADLMVSSHTGSGKTAAFTLPSL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 ++++ A PR L+L PTRELA QV + Y +N L A L+GG PF AQ K Sbjct: 61 HRLIDRKPAPGAGPRVLVLTPTRELAQQVEKAVKTYARNLRYLNTACLVGGAPFFAQAKL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L R DV++ TPGR++DH NR KL +++IE+LV+DEADRMLDMGF+ I+ I + P +R Sbjct: 121 LSRPVDVVVATPGRLIDHLNRRKLKLSDIEVLVLDEADRMLDMGFVEDIETIVAATPASR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+ + ++ +NP+RIE+ IE + K LL+ L Sbjct: 181 QTLLFSATLDGVVGNLARKMTRNPQRIEIAATVENRANIEQRLLMAD-NIVHKNRLLESL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L D ++ ++F K+ + +L+++GFS A+HG++ Q +R + L ++G I + Sbjct: 240 LGGDD-LQQAVVFTATKRGAEEVSLNLQEKGFSAAALHGDMHQTARNRTLDKLRQGRIGV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ + HV NFD P + E+Y+HRIGRTGRAGR G A T ++ I Sbjct: 299 LVATDVAARGIDVAGISHVINFDAPRQVEDYVHRIGRTGRAGRDGIAITFSGPREMGIIR 358 Query: 359 AIEKLIEK 366 AIE+ K Sbjct: 359 AIERFTGK 366 >gi|170025939|ref|YP_001722444.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis YPIII] gi|169752473|gb|ACA69991.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis YPIII] Length = 664 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 151/379 (39%), Positives = 238/379 (62%), Gaps = 9/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 + +A ++ P+ L+L PTRELA QVA+ + K+ N + V L GG ++ Q + L + Sbjct: 69 I---KADLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVKVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Y K AL+ + L++ Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALV-RFLEA 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIE 363 Query: 362 ---KLIEKKVDWLNGDLSS 377 KL +V+ N DL S Sbjct: 364 RTMKLTIPEVELPNADLLS 382 >gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1] Length = 442 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 152/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLI 364 IE LI Sbjct: 358 IEHLI 362 >gi|317479221|ref|ZP_07938356.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] gi|316904509|gb|EFV26328.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] Length = 425 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/368 (42%), Positives = 230/368 (62%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ K+IP++LQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFENLNLIEPILKALQKEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R + + LIL PTRELA Q+ + F YGK L A++ GG+ + Q +L+ Sbjct: 61 QKLYKTDNRKSI-KALILTPTRELAIQIGECFSAYGKYTGLRHAVIFGGVGQKPQTDELK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +L+ TPGR+ D N+G + + +E V+DEADRMLDMGFI I+ I L+P RQT Sbjct: 120 RGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++ ++ + L +P+++EV SST +TI + + +K LL LL+ Sbjct: 180 LFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVY--FVEKKEKKDLLIHLLK 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +++ +IF K L +L K G AIHGN Q +R + L+ FK +++++ Sbjct: 238 N-PAIESVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDI 356 Query: 361 EKLIEKKV 368 +KLI K + Sbjct: 357 QKLIGKSI 364 >gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] Length = 536 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 234/367 (63%), Gaps = 6/367 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FAD GL P+V+ A+ + G+ + TPIQ ++IP+ L D+ G AQTGTGKTA+F LP++ Sbjct: 3 NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLPLIH 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + K R+ +LI+ PTRELA QVA+ K + + + GG Q + L++ Sbjct: 63 KIAKEEERIV---SLIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKK 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR+LDH NR + +++++ +V+DEAD MLDMGF+ IQ+I LVP RQTL Sbjct: 120 KPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +QK++ FL++P+ + V +A I+ ++ + +K L +LL Sbjct: 180 LFSATMPANIQKLASQFLKDPEHVSVIPKHVSAPLIDQAYIEVPER--QKFEALSRLL-D 236 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + I+F K+ V L +L+K+G+S +HG++ Q R ++ F++G+I ++VA Sbjct: 237 MESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ V HV NFD+P E+Y+HRIGRTGRAG+ G A++ V ++ H+ IE Sbjct: 297 TDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIE 356 Query: 362 KLIEKKV 368 ++ ++ Sbjct: 357 RVTRHRI 363 >gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae] Length = 438 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 165/425 (38%), Positives = 252/425 (59%), Gaps = 24/425 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS +++ A+ +AGY KPT IQ + IP +L D+ AQTGTGKTA FVLP+L Sbjct: 7 MCFNSLGLSAEILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLPIL 66 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 ++ KG+ VR LIL PTRELAAQV N Y + L ++ GG+ Sbjct: 67 QHLSQTPVVVKGKKPVR---ALILAPTRELAAQVGQNVRNYSQFLRLKSLVVFGGVSINP 123 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD + + ++ +EILV+DEADRMLDMGFI I+ I + Sbjct: 124 QMMKLRGGVDILVATPGRLLDLVQQNAVSLSQVEILVLDEADRMLDMGFIHDIRRILDKL 183 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT ++++++++ + L NP +EV +S ++ ++ + +K L Sbjct: 184 PTKRQNLLFSATFSNQIKQLANSLLHNPTILEVAPRNSASQQVKQLI--HFVDKRRKAEL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ S++ + ++F K L L K G AIHGN Q +R + L++FK G Sbjct: 242 LSYLIGSEN-WQQVLVFTRTKYGANRLTEHLIKDGIKAMAIHGNKSQGARTRALADFKSG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + +V N+++PN AE+Y+HRIGRTGRA G A +LVA ++ Sbjct: 301 AIRVLVATDIAARGLDIEQLPYVVNYELPNVAEDYVHRIGRTGRAAATGLAVSLVAIDEQ 360 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 + AIE+L+++ + + L+ P + + P+PQK + +++ + Sbjct: 361 SLLTAIERLLKQSIPRM--ALAGYEP----------DPTIRPEPMPQKKPANKQHRRHSA 408 Query: 415 SQKSH 419 ++ SH Sbjct: 409 AKVSH 413 >gi|302878957|ref|YP_003847521.1| DEAD/DEAH box helicase domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581746|gb|ADL55757.1| DEAD/DEAH box helicase domain protein [Gallionella capsiferriformans ES-2] Length = 546 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 229/371 (61%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ A+ + GY +PTPIQ + IP ++ HD+ AQTG+GKTA+F+LP L Sbjct: 1 MTFEELNLNPSILKAIAETGYTEPTPIQEQAIPEIIAGHDLMASAQTGSGKTAAFILPAL 60 Query: 61 TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L A + PR L+L PTRELA QV D KYGKN + ++GG+P+ QN+ L Sbjct: 61 NRLATPSAMPGKGPRVLVLTPTRELAQQVCDAATKYGKNMRFKIISILGGMPYPVQNRLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+L+ TPGR++DH RG++ + +E+L++DEADRMLDMGF+ ++ I + P TRQ Sbjct: 121 SSHVDILVATPGRLIDHLERGRIDFSRLEMLILDEADRMLDMGFVDDVERIAAATPATRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQ 237 TLLFSAT+ + ++ L+ PKRI V+ E IE F A +K +L Sbjct: 181 TLLFSATLEGVVGNLASRLLKTPKRINVSAAKDKHENIEQRMMFADDVAHKNK---MLSH 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + + ++F K++ L L QG SV A+HG++ QR R + L N + G ++ Sbjct: 238 LLTDTE-VNQALVFTATKRDADGLADQLSAQGHSVAALHGDMSQRERNRTLLNMRNGNVR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV NFD+P AE+Y+HRIGRTGR G G A + + D + + Sbjct: 297 ILVATDVAARGLDVRGISHVINFDLPKFAEDYVHRIGRTGRGGSSGIAISFASNRDAQLL 356 Query: 358 DAIEKLIEKKV 368 IE+ E+ + Sbjct: 357 KRIERYTEQSI 367 >gi|294668347|ref|ZP_06733450.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309665|gb|EFE50908.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 399 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 153/366 (41%), Positives = 234/366 (63%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ + GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 9 FSSLGLGQEIVSALTEQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 68 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 69 LKRFATASTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTA 128 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + + +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 129 DLRAGCEIVVATVGRLLDHVKQKNINFSKVEIVVLDEADRMLDMGFIDDIRTIMRMLPKQ 188 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++ +F+ +P++IEV ++T +E +A +K LL++ Sbjct: 189 RQTLLFSATFAEPIRKLARDFMNSPEQIEVAAQNTTNANVEQHVIAV--DTFQKRRLLER 246 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ D M I+FC K++V + L+++ S AIHG+ Q++R++ LS FKEG ++ Sbjct: 247 LIVDLD-MNQVIVFCKTKQSVDQVTRDLQRREISAQAIHGDKSQQTRLETLSAFKEGNLR 305 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 306 VLVATDVAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDETEQKMF 365 Query: 358 DAIEKL 363 +AI++L Sbjct: 366 EAIKEL 371 >gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] Length = 453 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 153/361 (42%), Positives = 226/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + +V+ A+ D GY P+PIQ TIP +L+ DV G+AQTGTGKTA+F +P+L+ Sbjct: 17 FADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILSR 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ R ++P+ LIL PTRELA QVA+ F KY + L V + GG + Q L R Sbjct: 77 LDVDR---KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRR 133 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++N+E LV+DEAD ML MGF ++ I + P +Q Sbjct: 134 GAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVA 193 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S+ +L +P I V ++TA I +V Q +K L ++L+ Sbjct: 194 LFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQ--RKLDALTRILEV 251 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + + IIF K+ +L L +GFS AI+G+I Q R + + K G + ++VA Sbjct: 252 E-SFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVA 310 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A VA + + +IE Sbjct: 311 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSIE 370 Query: 362 K 362 + Sbjct: 371 R 371 >gi|149204026|ref|ZP_01880994.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035] gi|149142468|gb|EDM30513.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035] Length = 429 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 153/372 (41%), Positives = 236/372 (63%), Gaps = 9/372 (2%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 +GL +V + + G +PTPIQ IP L DV G+AQTGTGKT +F LP++T L + Sbjct: 1 MGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPLITALMQ 60 Query: 66 --GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123 G+ + R+LIL PTRELA+Q+ D K+ + + L++GG Q K+LE+G Sbjct: 61 APGKPAPKTIRSLILAPTRELASQIRDALLPLVKDSPIKINLVVGGASINPQIKRLEQGT 120 Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183 D+L+ TPGR+LD +R + ++ LV+DEAD+MLD+GFI ++ I L+ RQT+LF Sbjct: 121 DILVATPGRLLDLIDRRAVRLDAAHFLVLDEADQMLDLGFIHALRRIAGLLAAERQTMLF 180 Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQS 241 SATM ++++++ ++L++PKR++V+ P A+ + E FVA A K LL +LL Sbjct: 181 SATMPKQMEELAGSYLKHPKRVQVSPPGKAADKVTQEVHFVAKAA----KPDLLIELLAK 236 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++F K L LE+ G+SV AIHGN Q R + L +F++G ++++VA Sbjct: 237 HKS-ELALVFGRTKHGSDKLAKRLEQAGYSVAAIHGNKSQGQRERALKSFRDGHVKILVA 295 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDIPDV HV+N+++PN +NY+HRIGRT RAGR G A A +++ + I+ Sbjct: 296 TDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGRDGAAIAFCAPDEMGELKDIQ 355 Query: 362 KLIEKKVDWLNG 373 K++ + +G Sbjct: 356 KVLGTTIPVASG 367 >gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 580 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 149/375 (39%), Positives = 235/375 (62%), Gaps = 4/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LG+S ++ + G PTPIQ +IPL+L+ D+ G+AQTGTGKTA+F LP++ Sbjct: 24 NFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 83 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L ++ R R RTLIL PTREL Q+A++ +K+ + +L + +++GG+ Q +L Sbjct: 84 KLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQL 143 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+G D+L+ TPGR+LD NR + + + LV+DEAD+MLD+GF+ ++ I +VP RQ Sbjct: 144 EKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQ 203 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++ +L +P ++EV P A+ +E +V A + K LL++ L Sbjct: 204 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQ-YVHFVAGKNDKTELLRKSL 262 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ ++F K L LE G+SV +IHGN Q R + L F++G+I+ + Sbjct: 263 -TENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DIP V HV+N+D+P + Y+HRIGRT RAGR G A A ++ K + Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381 Query: 360 IEKLIEKKVDWLNGD 374 IE+L+ + +G+ Sbjct: 382 IERLMGIDITVASGE 396 >gi|192361806|ref|YP_001982445.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107] gi|190687971|gb|ACE85649.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107] Length = 625 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/369 (42%), Positives = 230/369 (62%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LS V+ A+ GY P+PIQ IP++L D+ G+AQTGTGKTA+F LP+L+ Sbjct: 31 FADLALSAPVLKAIQAVGYEVPSPIQAAAIPILLDGGDILGMAQTGTGKTAAFALPLLSK 90 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + P+ L+L PTRELA QVA+ F+KY + V + GG +Q ++L+R Sbjct: 91 LDLSQNE---PQILVLAPTRELAIQVAEAFQKYAADMPGFHVLPIYGGQDMTSQLRQLKR 147 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L +NN++ LV+DEAD ML MGFI ++ I P TRQT Sbjct: 148 GVHVVVGTPGRVMDHLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWILEHTPETRQTA 207 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++KV++N+L++ K I++ + T + IE + + K L ++L+ Sbjct: 208 LFSATMPREIRKVADNYLRDAKEIKIASTQQTGDNIEQVYWMVSG--TNKLDALTRILEV 265 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K V L LE +G+S ++G+++Q+ R + + K + ++ Sbjct: 266 EPFDGM---IIFVRTKTATVELAEKLEARGYSAAPLNGDMNQQLRERTIERLKTSKLDIV 322 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ V HV N+D+P +E Y+HRIGRTGRAGR GKA VA + + + Sbjct: 323 IATDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRLLYT 382 Query: 360 IEKLIEKKV 368 IEK K + Sbjct: 383 IEKATRKPI 391 >gi|319441074|ref|ZP_07990230.1| ATP-dependent RNA helicase [Corynebacterium variabile DSM 44702] Length = 732 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 150/363 (41%), Positives = 222/363 (61%), Gaps = 11/363 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL +++ AV GYV P+PIQ TIP ++ HDV G+AQTGTGKTA+F LP L+ Sbjct: 71 FAGLGLPDRILAAVEKVGYVTPSPIQAATIPALMDGHDVVGLAQTGTGKTAAFALPALSR 130 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L+ R P+ L+L PTRELA Q AD FE + + +++ + GG P+ AQ L R Sbjct: 131 LDTTE---RHPQVLVLAPTRELALQSADAFESFASHIGGVSILPIYGGAPYGAQLSGLRR 187 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH +G L ++++ LV+DEAD ML+MGF ++ I + P +RQ Sbjct: 188 GAQVIVGTPGRIIDHLEKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILADTPDSRQVA 247 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++S+ +L +P+ V + T + I ++ + K L ++L+ Sbjct: 248 LFSATMPSAIRRLSKQYLNDPQEYTVKSEQRTGDNITQDYL--MVSHRNKLDALTRILEV 305 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D M IIF K + L L +GF AI+G+I Q R + + K+G + ++ Sbjct: 306 TEFDAM---IIFVRTKSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDIL 362 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HVFN+D+P E+Y+HRIGRTGRAGR G+A V + + + Sbjct: 363 VATDVAARGLDVDRITHVFNYDIPRDTESYVHRIGRTGRAGRTGRAILFVTPRERRLLKN 422 Query: 360 IEK 362 IE+ Sbjct: 423 IER 425 >gi|170725457|ref|YP_001759483.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810804|gb|ACA85388.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 432 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 233/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY K TP+Q + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFAPEILRAISECGYQKMTPVQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 -TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++K R R LIL PTRELA+Q+ADN Y K+ ++V + GG+ E Q +K Sbjct: 61 QKMIDKPSETQRSNTRALILTPTRELASQIADNINDYSKHMQVSVLTIYGGVKLETQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++RG D+++ TPGR+L+H L ++N++ +V+DEADRMLDMGF+ IQ + V Sbjct: 121 IKRGVDIIVATPGRLLEHIQACNLNLSNVDFMVLDEADRMLDMGFVSDIQKVLQAVNKNS 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q +LFSAT + ++K++ +FL PK I V+ ++TA+T+ V + +K L+ +L Sbjct: 181 QKMLFSATFSSSVKKLANDFLDKPKLISVDKQNTTADTVSQ--VVYPVEQRRKRELVSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + K +IF + L L G +HG Q +R + L FKEG +++ Sbjct: 239 I-GKKNWKQVLIFTATRDAADKLVKELNLDGIPSSVVHGEKAQGNRRRALREFKEGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDI D+ +V N+D+P AE+Y+HRIGRTGRAG+ G A +LV++E+ + + Sbjct: 298 LVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI KK+ Sbjct: 358 DIEKLIGKKL 367 >gi|270307613|ref|YP_003329671.1| hypothetical protein DhcVS_172 [Dehalococcoides sp. VS] gi|270153505|gb|ACZ61343.1| hypothetical protein DhcVS_172 [Dehalococcoides sp. VS] Length = 561 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 151/375 (40%), Positives = 227/375 (60%), Gaps = 8/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P V+ V GY +PTPIQ + IP +++ HDV G+AQTGTGKTA++ LP++ Sbjct: 1 MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPIMEGHDVIGLAQTGTGKTAAYALPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L R RVR TL++ PTRELA Q++D+F G+ + + GG+ + Q ++L Sbjct: 61 QKMLSTPRGRVR---TLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DV++ PGR+LDH RG + + +E L+IDEADRM DMGF P IQ+I + Q Sbjct: 118 RSGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E++K+++ NP I+V T + A ++ H + +K LL ++L Sbjct: 178 TLLFSATMPPEVRKLTQESQTNPVTIQVGT-QAPASSVSHSVYPVKSH--QKTPLLIEIL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ +T K+ +IF K NL + K GF+ ++ GN+ Q R ++ F+ +++ Sbjct: 235 KTVET-KSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRRNFKIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV NFD+P+ E+Y HRIGRTGR R G+A +LV D + Sbjct: 294 VATDIAARGLDIDHISHVINFDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRD 353 Query: 360 IEKLIEKKVDWLNGD 374 I++L+ + L D Sbjct: 354 IQRLLSSPIQRLRVD 368 >gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus selenitireducens MLS10] gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens MLS10] Length = 528 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 237/384 (61%), Gaps = 9/384 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + +S ++ A+ + G+ P+PIQ K IP +L+ +D+ G AQTGTGKTA+F +P+L Sbjct: 2 MTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPIL 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ R + + +IL PTRELA QVA +K K + + GG Q K+L+ Sbjct: 62 EKLK----RTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+++ TPGR+LDH NR L ++ I V+DEAD MLDMGFI I+ I + RQT Sbjct: 118 RGVDIVVGTPGRVLDHVNRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+S ++ +P+++ ++ TA +I + + K L +L+ Sbjct: 178 LLFSATMPPPIRKLSNKYMNSPEQVTISKSEVTAPSINQVYYKVLEK--NKLDSLCRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++T GIIFC KK V L +L+ +G+ +HG++ Q R ++ F++ +I ++ Sbjct: 236 SENT-DLGIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFLI 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N+D+P E+Y+HRIGRTGRAGR G A TLV ++KH+ +I Sbjct: 295 ATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRSI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E I+ K+ N L S+ +EK Sbjct: 355 ENEIKMKIPSQN--LPSVEEVIEK 376 >gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum SK141] gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum SK141] Length = 619 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 151/385 (39%), Positives = 240/385 (62%), Gaps = 13/385 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL K++ AV G+ KP+PIQ +TIP++++ DV G+AQTGTGKTA+F LP+L+ Sbjct: 57 FAHLGLPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 116 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ L+L PTRELA QVAD+F+ + ++ + V + GG + Q L R Sbjct: 117 ID---TKARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRR 173 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +G L ++ ++ LV+DEAD ML+MGF ++ I P +Q Sbjct: 174 GAQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVA 233 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240 LFSATM + ++++S+ +L NP + V + T + I F+ + K ++L+ Sbjct: 234 LFSATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFL--LIPHRAKMDAFTRILEV 291 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + I+FC K + +L +GFS AI+G+I Q R + + K+G + ++ Sbjct: 292 INYDAI---IVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDIL 348 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV NFD+PN E+Y+HRIGRTGRAGR G+A V + + + + Sbjct: 349 VATDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS 408 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384 IE++ +++ + DL S++ EK Sbjct: 409 IERVTNARLEEM--DLPSVDEVNEK 431 >gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] Length = 444 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 156/374 (41%), Positives = 232/374 (62%), Gaps = 13/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY + TP+Q + IP + + DV AQTGTGKTA+F LP+L Sbjct: 10 MRFESFSFAPEILRAISECGYQEMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 69 Query: 61 TILEKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + MP R LIL PTRELAAQ+ADN Y K +++V + GG+ ++ Sbjct: 70 QKMFDNP----MPTQRSNTRALILTPTRELAAQIADNISDYSKYIDVSVLTIYGGVKVDS 125 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q +KL+RG D+++ TPGR+L+H L ++N+E LV+DEADRMLDMGFI IQ I V Sbjct: 126 QAQKLKRGTDIIVATPGRLLEHLQACNLNLSNVEFLVLDEADRMLDMGFISDIQKIMQAV 185 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ LLFSAT + ++K++ + L PK I +N+ +STA+T+ V + +K L Sbjct: 186 NKQRQNLLFSATFSSAVKKLANDMLVKPKLISLNSQNSTADTVSQ--VVYPVEQRRKREL 243 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L +L+ + + +IF + L L G + +HG Q +R + L FKEG Sbjct: 244 LSELI-GKKNWQQVLIFTATRDAADKLVKELNLDGITSSVVHGEKAQGNRRRALREFKEG 302 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++ +VA+++AARGLDI D+ +V N+D+P AE+Y+HRIGRTGRAG+ G A +LV++E+ Sbjct: 303 KVRALVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEE 362 Query: 355 KHIDAIEKLIEKKV 368 + + IE LI KK+ Sbjct: 363 RTLYDIETLIGKKL 376 >gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium ATCC 35110] Length = 431 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 156/402 (38%), Positives = 236/402 (58%), Gaps = 10/402 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F + L+P ++ A+ + GY PT IQ IP + D+ AQTGTGKTA+F LP+L Sbjct: 4 INFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPIL 63 Query: 61 TILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R+ +R PR LIL PTRELA Q+ +N Y + L +++GG+P Q K L Sbjct: 64 HRLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVIMGGVPAHPQIKML 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 R D+L+ TPGR++D F++G + ++ I+ V+DEADRMLDMGFI I+ I SL P Q Sbjct: 124 RRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT++ E++ ++ L+ P RIEV SS A+ I + + + + K LL L Sbjct: 184 TLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVL--FVEQNNKRELLHNLF 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D +K ++F K+ ++ L + G S AIH + QR+R + L F G I ++ Sbjct: 242 KEND-IKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+++P+ ENY+HRIGRT RAG G A + ++++ + Sbjct: 301 VATDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKG 360 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 IEKL + + + N P I +A + K PQ Sbjct: 361 IEKLTKSSIAICD------NNPFHSIAVASMHKVAKAGNKPQ 396 >gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 589 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 232/369 (62%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ S + A+ D ++ P+PIQ +TIPL+LQ D +AQTGTGKTA+F LP+L Sbjct: 7 NFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 L + + LIL PTRELA QVA+ FE K N+T+A+L GG + Q K+L Sbjct: 67 NLS---PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGRILDH ++G LL+NN++ ++DEAD ML MGFI ++ I +P +Q Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++++ +L +P IE+ ++T ++IE F+ +A +K L ++L+ Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFL--FASVHQKPDALIRVLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + I+F K + + L++ G AIHG+I Q R +I++ FK+G I ++V Sbjct: 242 VED-YQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV N+D+P+ E Y+HRIGRTGRAGR G V ++ + I +I Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360 Query: 361 EKLIEKKVD 369 E+ ++++ Sbjct: 361 ERHTRQRIE 369 >gi|294139619|ref|YP_003555597.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea DSS12] gi|293326088|dbj|BAJ00819.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea DSS12] Length = 435 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 153/373 (41%), Positives = 231/373 (61%), Gaps = 11/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY K TP+Q + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 TI-----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +E R+ R LIL PTRELA+Q+A+N Y K +++V + GG+ E Q Sbjct: 61 QKIFDNPMETQRSNAR---ALILTPTRELASQIAENISDYSKYMDVSVLTIYGGVKLETQ 117 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +KL+RG D+++ TPGR+L+H L ++N++ LV+DEADRMLDMGFI IQ I V Sbjct: 118 AQKLKRGTDIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFISDIQKIMQAVN 177 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT + ++K++ + L PK I +N+ +STA+T+ + +K LL Sbjct: 178 KQRQNLLFSATFSSAVKKLANDMLVKPKLINLNSQNSTADTVSQVIYPV--EQRRKRELL 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L+ + + ++F + L L G + +HG Q +R + L FKEG Sbjct: 236 SELI-GKKNWQQVLVFTATRDAADKLVKELNLDGITSSVVHGEKAQGTRRRALREFKEGK 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VA+++AARGLDI D+ +V N+D+P AE+Y+HRIGRTGRAG+ G A +LV++E+ + Sbjct: 295 VRALVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 354 Query: 356 HIDAIEKLIEKKV 368 + IE LI KK+ Sbjct: 355 TLYDIETLIGKKL 367 >gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC 25745] gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC 25745] Length = 526 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 156/384 (40%), Positives = 235/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ AVLD GY +PTPIQ +TIP VL+ D+ G AQTGTGKTA+F LP+L Sbjct: 1 MKFTELGLDEDILKAVLDNGYDEPTPIQAETIPGVLEGKDIIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ +I+ PTRELAAQ K GK V ++ GG Q L+ Sbjct: 61 QNVDLDNPNIQ---AIIISPTRELAAQTQAEIFKLGKYKKAKVQVVYGGSDIRRQINALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + +++++ LV+DEAD MLDMGF+P I++I P RQT Sbjct: 118 SHPQIVVGTPGRLLDHIGRKTIRLDHVKTLVLDEADDMLDMGFLPDIEHIIEQTPSERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+ F+ +PK+I V + TA+ ++ +V ++ +K +L ++L Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQITVKSKELTADLVDQYYV--RSKEFEKFDILTRVLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q K +IF K+ V + L +G++ IHG++ Q+ RM IL F+EG + ++V Sbjct: 236 VQ-APKLAVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFREGQLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG G + T V ++ ++ + Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGATGTSVTFVTNWEMDYLRDV 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ L + PP E+ Sbjct: 355 EHLTKKR-------LLPMKPPTEE 371 >gi|332992020|gb|AEF02075.1| ATP-dependent RNA helicase [Alteromonas sp. SN2] Length = 414 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/368 (42%), Positives = 229/368 (62%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL +++ V + GY P+PIQ + IP +L + D+ IAQTGTGKTASF LP+L Sbjct: 1 MSFSALGLCTELLNTVAEKGYTTPSPIQQEAIPAILSKQDLIAIAQTGTGKTASFSLPIL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +K R+ R LI+ PTRELAAQVA N E+Y +N + + GG+ E Q L Sbjct: 61 QLLADKPRSEPNCVRALIIAPTRELAAQVAQNVEQYSQNLKVRSTAVFGGVRIEPQKYAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+LI TPGR+LD + +G + ++EILV+DEADRMLD+GFI +I +I L+P RQ Sbjct: 121 AQGVDILIATPGRLLDLYEQGDINFEHLEILVLDEADRMLDLGFIDHIHHIQKLLPEKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + E++ ++ L PK IE+ E I + +K LL L+ Sbjct: 181 TLLFSATFSKEIKTLATTMLNTPKTIELARAKDHIEKITQILHPVDKE--RKNELLIHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ D ++F K+ L + LE +G +IH N Q++R L+ F++G+I+++ Sbjct: 239 ENND-WSQILVFTRTKRGADELRNELEAKGIVAESIHANRTQQARTLALNGFRDGSIKVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 + +DLAARG+DI + V N D+P AE+YIHRIGRTGRA G A +L + ++ K + Sbjct: 298 IGTDLAARGIDIQQLPCVINVDLPYVAEDYIHRIGRTGRASSEGLAISLFSDDEAKQLKT 357 Query: 360 IEKLIEKK 367 IE+L+ ++ Sbjct: 358 IERLLGRQ 365 >gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355] Length = 523 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 234/372 (62%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWLN 372 E L +K++ L Sbjct: 355 ENLTKKRMKGLK 366 >gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium ATCC 33035] gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium ATCC 33035] Length = 619 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 151/385 (39%), Positives = 240/385 (62%), Gaps = 13/385 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL K++ AV G+ KP+PIQ +TIP++++ DV G+AQTGTGKTA+F LP+L+ Sbjct: 57 FAHLGLPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 116 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ L+L PTRELA QVAD+F+ + ++ + V + GG + Q L R Sbjct: 117 ID---TKARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRR 173 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +G L ++ ++ LV+DEAD ML+MGF ++ I P +Q Sbjct: 174 GAQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVA 233 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240 LFSATM + ++++S+ +L NP + V + T + I F+ + K ++L+ Sbjct: 234 LFSATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFL--LIPHRAKMDAFTRILEV 291 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + I+FC K + +L +GFS AI+G+I Q R + + K+G + ++ Sbjct: 292 INYDAI---IVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDIL 348 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV NFD+PN E+Y+HRIGRTGRAGR G+A V + + + + Sbjct: 349 VATDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS 408 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384 IE++ +++ + DL S++ EK Sbjct: 409 IERVTNARLEEM--DLPSVDEVNEK 431 >gi|148244296|ref|YP_001218990.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius okutanii HA] gi|146326123|dbj|BAF61266.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius okutanii HA] Length = 422 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 232/370 (62%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ GY +P+PIQ ++IP +L DV AQTGTGKTA F LP+L Sbjct: 1 MSFSKLGLSDSILKAIEQKGYSEPSPIQNQSIPAILNGKDVMAAAQTGTGKTACFALPIL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 IL K + + RTLIL PTRELA QV+D+ YGK L +++ GG+ Q ++L Sbjct: 61 EILSKKKPTKSNQVRTLILTPTRELAIQVSDSVTTYGKYLPLKSSVVFGGVKINPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD +++ + + +EI+V DEADRMLDMGFI I+ I ++P +Q Sbjct: 121 CSGVDILVATPGRLLDLYSQNSVKFDMLEIVVFDEADRMLDMGFINDIKRILKILPSKKQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT ++++ ++++ + NP I V +ST + I+ SKK ALL L+ Sbjct: 181 TLMFSATFSNKILTLAKSLVNNPVEISVTPRNSTVKAIKQWIHP--VDKSKKHALLTHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++F K + + LEK+ AIH N Q +R + L +FK + ++ Sbjct: 239 QEHN-WHQVLVFSRTKYGANRIVNQLEKKKIRATAIHSNKSQGARTRALLDFKNHEVNVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG++I + HV NFD+P E+Y+HRIGRTGRAG G+A +LV+ ++ K + Sbjct: 298 VATDIAARGIEINQLPHVINFDLPYVPEDYVHRIGRTGRAGSKGEAISLVSADEAKQLFD 357 Query: 360 IEKLIEKKVD 369 +E LI+ K+D Sbjct: 358 VECLIQNKLD 367 >gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp. PRwf-1] gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1] Length = 516 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 232/365 (63%), Gaps = 6/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+P+++ A+ +GY PTPIQ +IP L D+ AQTG+GKTA+FVLPML Sbjct: 42 FVDLELAPELLEALTSSGYKHPTPIQALSIPPALAGRDLLLSAQTGSGKTAAFVLPMLDK 101 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 + + +A ++ T+IL PTRELA QV+D+ +Y K N+ L+GG P+ Q + L + Sbjct: 102 IIRDKATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALNK 161 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR +DH N G++ ++ ++IL++DEADRMLDMGF I+ + P RQT+ Sbjct: 162 GVQVIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFAEDIEKVMKAAPKNRQTI 221 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 + SAT + K++ +F NP+RI++ + T E + A ++ K +L LL Sbjct: 222 MCSATWDGPVGKIAASFTNNPERIDIK--AETKHIDESVYYAD--DFNHKNRILDNLLTQ 277 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D + IIF K++ L SL++QG +HG++ Q R +I+++ K G I ++VA Sbjct: 278 KD-VNQAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRSRIINDVKAGKITILVA 336 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ + HVFN+D+P + E+Y+HRIGR+GRAGR G A + + +D +DAI Sbjct: 337 TDVAARGIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINICSIDDRAQLDAIN 396 Query: 362 KLIEK 366 + +++ Sbjct: 397 RYLKR 401 >gi|88813706|ref|ZP_01128932.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231] gi|88789025|gb|EAR20166.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231] Length = 586 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 232/384 (60%), Gaps = 18/384 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DLGL+P V+ A+ D GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L Sbjct: 9 ITFQDLGLNPAVLNALHDVGYEVPSPIQAHTIPHILAGRDVLGQAQTGTGKTAAFALPLL 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 + L+ +A +P+ L+L PTRELA QVA+ F++Y V L GG + Q ++L Sbjct: 69 SRLDLSQA---VPQVLVLTPTRELAIQVAEAFQRYAARLTGFHVLPLYGGQDYRGQFQRL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G V++ TPGR++DH RG L ++ + LV+DEAD ML MGFI ++ I +P TRQ Sbjct: 126 AHGTHVVVGTPGRVMDHMRRGTLKLDALACLVLDEADEMLRMGFIDDVEWILDQIPSTRQ 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT+ ++++++ L NP+ I + ++TAETI + + K L ++L Sbjct: 186 IALFSATLPPVIRRIAKKHLHNPQEISIKVRTATAETIRQRYWLVNGTH--KLDALTRIL 243 Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ D M I+F + V L LE +G++ A+ G+I Q+ R + K G + Sbjct: 244 EAEPFDGM---IVFVRTRTATVELAEKLEARGYAAAALSGDISQKLREHTVQRLKGGKLD 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+PN E Y+HRIGRTGRAGR G A V + + + Sbjct: 301 ILVATDVAARGLDVERISHVINYDIPNDTEAYVHRIGRTGRAGRAGDAILFVTPREQRML 360 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPP 381 IEK +K+ ++++PP Sbjct: 361 RMIEKATRQKI-------TAMSPP 377 >gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974] gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974] Length = 530 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 149/361 (41%), Positives = 224/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P V+ AV + GY P+PIQ +TIP +L DV G+A TGTGKTA+F LP+L+ Sbjct: 11 FADLELHPSVLEAVREVGYETPSPIQAQTIPALLDGRDVVGLAATGTGKTAAFALPVLSR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 ++ ++R P+ L+L PTRELA QV++ F +Y K ++V + GG + Q + L R Sbjct: 71 IDP---KLRRPQALVLAPTRELALQVSEAFSRYASKMPQVSVVCIYGGGAYPVQLQALGR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L + + LV+DEAD ML MGF ++ + +Q Sbjct: 128 GAQVVVGTPGRVVDHLERGTLKLGELRFLVLDEADEMLKMGFQEDVERVLGAAAEEKQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S+ +L NP + V ++T+E IE + T + +K LL ++L+ Sbjct: 188 LFSATMPGAIRKISKTYLHNPVEVTVKAATTTSENIEQRY--TLVAHHRKLDLLTRILEV 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I+F K+ L L +GF+ ++G+I Q +R + +S +EG I ++VA Sbjct: 246 E-PFSAMIVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVSALREGKIDILVA 304 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+D P+ E+Y+HRIGRTGRAGR G ++ V + I AIE Sbjct: 305 TDVAARGLDVERITHVFNYDAPHDTESYVHRIGRTGRAGRTGVSYLFVTPRERSMIGAIE 364 Query: 362 K 362 + Sbjct: 365 R 365 >gi|303256630|ref|ZP_07342644.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium 1_1_47] gi|302860121|gb|EFL83198.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium 1_1_47] Length = 423 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 162/416 (38%), Positives = 240/416 (57%), Gaps = 22/416 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F LG +P++ + G+ PTPIQ+K IPLV Q +D+ AQTGTGKTA+FVLPML Sbjct: 5 FKTLGFAPQLEKLIEVNGFTSPTPIQMKAIPLVRQGYDLLAAAQTGTGKTAAFVLPMLQK 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I E + R+PR L+L PTRELAAQV + GK+ + A++ GG+ Q + Sbjct: 65 IIEEPTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAIA 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D L+ TPGR+LD N+G ++ IL++DEADRMLDMGF+P ++ I +P RQT Sbjct: 125 KGLDFLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPPDRQT 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + E++K++ FL P+ +E+ ++ + + A K +L+ L+ Sbjct: 185 LLFSATFSPEIKKLASEFLNKPESVEIERNKDSSLVRQTLYRVPKAD---KHTVLRDLI- 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++F K L L K G AIHG+ Q +R L FKE + ++V Sbjct: 241 VDNQWDQVLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N+++P +AE+Y+HRIGRTGRAG G+A++LV+ E++ + AI Sbjct: 301 ATDIAARGLDIEKLPQVVNYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQLAAI 360 Query: 361 EKLIEK--------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408 EK I+K ++D+ + +S+ P N R+ P GF R Sbjct: 361 EKFIKKPLPLSDFPRLDYSDWKVSAPTKP--------QNKNRRPGPRRNGPAGFKR 408 >gi|255066127|ref|ZP_05317982.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256] gi|255049672|gb|EET45136.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256] Length = 468 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 154/366 (42%), Positives = 234/366 (63%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++V A+ + GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 4 FASLGLGSEIVSALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 64 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 124 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKP 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT ++K++++F+ P+ +EV ++T+ +E +A A KK LL++ Sbjct: 184 RQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDAL--KKRNLLER 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ + +IHG+ Q+SR++ L+ FKEG+++ Sbjct: 242 LIVDLQ-MNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ K + K Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360 Query: 358 DAIEKL 363 +AI++L Sbjct: 361 EAIKEL 366 >gi|52840505|ref|YP_094304.1| DEAD-box ATP dependent DNA helicase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627616|gb|AAU26357.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 414 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 161/373 (43%), Positives = 229/373 (61%), Gaps = 10/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L + AV + GY PT IQ+K IPL+L HD+ G AQTGTGKTASFVLP Sbjct: 1 MSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLP-- 58 Query: 61 TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 IL+K + + + LIL PTRELA QV ++ +YGK L A++ GG+ Q Sbjct: 59 -ILQKASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQI 117 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K+L+ G ++L+ TPGR+LD + + + + I+ LV+DEADRMLDMGFI I+ I L+P Sbjct: 118 KQLDSGLEILVATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPL 177 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT T E++ ++ N L I++ ++ +TI+ + + K ALL Sbjct: 178 KRQNLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSV--DRNHKLALLS 235 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL ++ ++F K L L + AIHGN Q R+K L++FK G + Sbjct: 236 HLLH-KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKV 294 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q ++A+D+AARG+DI + V NFD+P+ E+Y+HRIGRTGRAG G A +LV+ E+IK Sbjct: 295 QTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKL 354 Query: 357 IDAIEKLIEKKVD 369 + +IEKLI +K++ Sbjct: 355 LLSIEKLINQKLE 367 >gi|332532711|ref|ZP_08408587.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505] gi|332037927|gb|EGI74376.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505] Length = 415 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 170/389 (43%), Positives = 238/389 (61%), Gaps = 24/389 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P ++ A+ Y +PT IQIKTIP +L DV G AQTGTGKTA+FVLP+L Sbjct: 6 FSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLLHK 65 Query: 63 L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L E+G ARV +IL PTRELA QV +FEKY + N+ AL GG Q Sbjct: 66 LLNTPKKDEQGLARV-----VILTPTRELAQQVFASFEKYAQGTNINGALAYGGASIGPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L + A V++ TPGR+LDH +G +++++++ LV DEADRMLDMGFI I+ I +P Sbjct: 121 IKAL-KTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIP 179 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT D + ++S+ L+NP+ IEV+ +S A +E A +K L+ Sbjct: 180 GDRQTLLFSATFDDSVFELSKKLLKNPELIEVDKRNSAAVEVEQVIYAV--DEDRKRELV 237 Query: 236 QQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ MKN +IF K+ L + K G +IHG+ Q +R + L NFK Sbjct: 238 SHMI----GMKNWRRVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFK 293 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 EG +++VA+D+AARGLDI + +V NF++P AE+Y+HRIGRTGRAG G A +LV+ + Sbjct: 294 EGITRVLVATDVAARGLDISTLRYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLD 353 Query: 353 DIKHIDAIEKLIEKKV--DWLNGDLSSLN 379 + ++ IE L++ ++ WL G LN Sbjct: 354 EQWLLEEIEVLLDTRLTPQWLEGYEPDLN 382 >gi|94267131|ref|ZP_01290765.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93452155|gb|EAT02824.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 509 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 154/374 (41%), Positives = 230/374 (61%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+P V AV + GY PTPIQ I +L D+ G AQTGTGKTA+F LP+L Sbjct: 7 MHFSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + L+ R + P+ L+L PTRELA QVAD + Y ++ V L GG Q + L Sbjct: 67 SRLDTSR---KYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG ++ TPGRI DH RG L ++ + +VIDEAD ML MGF+ ++ I + P RQ Sbjct: 124 QRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238 LFSATMT E+ +++ L++P+ I + T ++T ETI +H ++ Q +K L ++ Sbjct: 184 VALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLV---QGLQKLDALTRI 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ + ++ +IF K V L L +GF+ A++G++ Q R K + K+GT+ + Sbjct: 241 LEA-EAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDI 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A VA +++ + Sbjct: 300 VVATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLH 359 Query: 359 AIEKLIEKKVDWLN 372 AIEK +++ L Sbjct: 360 AIEKATRQQIARLQ 373 >gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S] gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] Length = 610 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 153/361 (42%), Positives = 226/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + +V+ A+ D GY P+PIQ TIP +L+ DV G+AQTGTGKTA+F +P+L+ Sbjct: 17 FADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILSR 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ R ++P+ LIL PTRELA QVA+ F KY + L V + GG + Q L R Sbjct: 77 LDVDR---KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRR 133 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++N+E LV+DEAD ML MGF ++ I + P +Q Sbjct: 134 GAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVA 193 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S+ +L +P I V ++TA I +V Q +K L ++L+ Sbjct: 194 LFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQ--RKLDALTRILEV 251 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + + IIF K+ +L L +GFS AI+G+I Q R + + K G + ++VA Sbjct: 252 E-SFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVA 310 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A VA + + +IE Sbjct: 311 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSIE 370 Query: 362 K 362 + Sbjct: 371 R 371 >gi|307824650|ref|ZP_07654874.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] gi|307734304|gb|EFO05157.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] Length = 596 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 232/371 (62%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L V+ A+ D GY P+PIQ +TIPL+LQ DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FSDLALIEPVLRALKDVGYETPSPIQAQTIPLLLQGKDVLGQAQTGTGKTAAFALPILSR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + + P+ L+L PTRELA QVA+ F++Y + V + GG + Q ++L+R Sbjct: 71 ID---LKQKDPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +G L + + LV+DEAD ML MGFI ++ I +P RQ Sbjct: 128 GAHVVVGTPGRVMDHMRKGTLNLKGLGFLVLDEADEMLRMGFIDDVEWILDQIPEKRQIA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+++ +L P+ I + +++AE I + + K L ++L++ Sbjct: 188 LFSATMPSVIRKIAQQYLNEPEHITIKVTTASAENIRQRYWLVSGVH--KLDALTRILEA 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T IIF K + V L LE +G+S AI+G++ Q R + ++N K G + +++A Sbjct: 246 E-TFDGMIIFVRTKTSTVELAEKLEARGYSAAAINGDMSQALRERAIANLKNGKLDILIA 304 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A +A + + IE Sbjct: 305 TDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFIAPRERNLLANIE 364 Query: 362 KLIEKKVDWLN 372 K ++KV+ + Sbjct: 365 KATKQKVEEMG 375 >gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30] gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10] gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20] gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30] gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10] gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20] Length = 507 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 236/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS +++ +V AG+ + TPIQ TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ +++ L++ PTRELA Q + + GK+ + V + GG Q ++L+ Sbjct: 61 EKIDPTNHQLQ---GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + +E LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++ P+ +++ TA+ I+ +V + + +K ++ +LL Sbjct: 178 LLFSATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRS--KDYEKFDIMTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ ++ + PP EK Sbjct: 355 ENLTKKR-------MTPMRPPTEK 371 >gi|149917594|ref|ZP_01906091.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica SIR-1] gi|149821657|gb|EDM81055.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica SIR-1] Length = 437 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 152/372 (40%), Positives = 217/372 (58%), Gaps = 3/372 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV +AGY PTPIQ + IP + D+ G AQTGTGKTA+F LP+L Sbjct: 1 MSFETLGLAKPLLRAVREAGYETPTPIQTQAIPSAIAGRDILGCAQTGTGKTAAFSLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ R LI+ PTRELAAQ+ N Y K+ L ++ GG+ + Q +L Sbjct: 61 QRLDADPPDEPRIRALIVSPTRELAAQIGANIGSYAKHLELWHTVIFGGVKDKPQIAELR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVL+ TPGR+LD RG + + +E+ V+DEAD+MLDMGF+P I+ I +P RQT Sbjct: 121 RGVDVLVATPGRLLDLMGRGHIDLKRVEVFVLDEADQMLDMGFLPDIRRIVKALPSKRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM +++++ L +P + V S A+ + + + K LL LL+ Sbjct: 181 LFFSATMPSAIKELAATLLDDPVEVAVARVSEPADVDQRLY---FVDKGNKRKLLVDLLR 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ ++F K + L G S AIHGN Q +R + L FK G ++++V Sbjct: 238 ADPSVSRSLVFSRTKHGANRIAKHLSAAGVSSAAIHGNKSQNARTRALEAFKGGELRVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV NFD+PN E YIHRIGRT RAG G A + E+ ++ I Sbjct: 298 ATDIAARGLDISKVSHVINFDLPNVPETYIHRIGRTARAGNSGIALSFCDVEERAYLVDI 357 Query: 361 EKLIEKKVDWLN 372 E+L+ ++ + Sbjct: 358 ERLLRAHIERIE 369 >gi|110598174|ref|ZP_01386451.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans DSM 13031] gi|110340188|gb|EAT58686.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans DSM 13031] Length = 418 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 156/389 (40%), Positives = 239/389 (61%), Gaps = 13/389 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L + ++ ++ + GY PTPIQ + IP+VLQ +D+ G AQTGTGKTA+F +P+L Sbjct: 1 MQFHSLDIIEPILKSLQEEGYTTPTPIQAEAIPIVLQGNDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + + R R+LIL PTRELA Q+ ++F YG++ L ++ GG+ Q Sbjct: 61 QLLSESHSNEKKRKIRSLILTPTRELAIQIGESFRAYGRHTGLNNTVIFGGVNQNPQISA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D++I TPGR+LD N+G L + ++EI V+DEADRMLDMGFI I+ + +++P + Sbjct: 121 LRNGVDIVIATPGRLLDLMNQGFLNLRDVEIFVLDEADRMLDMGFIHDIKKVLAVLPKKK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237 Q+L FSAT+ E+ +++ L NP + V SST + I +H + + K +LL Sbjct: 181 QSLFFSATLPPEIVRLAGTILHNPSEVSVTPISSTVDIIQQHIY---FVDKGNKNSLLVD 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ Q ++K ++F K + L AIHGN Q +R + LSNFK T + Sbjct: 238 ILKDQ-SIKTALVFTRTKHGADKVVKFLSHHNIRAEAIHGNKAQNARQRALSNFKNQTTR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ ++ +V NF++ N AE Y+HRIGRTGRAG G A++ E+ +++ Sbjct: 297 VLVATDIAARGIDVDELEYVINFEISNIAETYVHRIGRTGRAGAKGTAYSFCDAEEKEYL 356 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKID 386 IEKLI KK+ ++ N P ID Sbjct: 357 RDIEKLIGKKIPVID------NHPFPLID 379 >gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC 12755] gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC 12755] Length = 508 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 154/384 (40%), Positives = 236/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS +++ +V AG+ + TPIQ TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ +++ L++ PTRELA Q + + GK+ + V + GG Q ++L+ Sbjct: 61 EKIDPANHQLQ---GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + +E LV+DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F++ P+ +++ TA+ I+ +V + + +K ++ +LL Sbjct: 178 LLFSATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRS--KDYEKFDVMTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-SPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ ++ + PP EK Sbjct: 355 ENLTKKR-------MTPMRPPTEK 371 >gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058] Length = 523 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ KTIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGIKFMKEPEHVKIAAKELTTELVDQYYIRV--KENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|315182247|gb|ADT89160.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii NCTC 11218] Length = 397 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 158/374 (42%), Positives = 229/374 (61%), Gaps = 10/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV + GY KPT IQ K IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSKLGLSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ GR R + R LIL PTRELA QVAD +YG++ LT + GG+ +AQ ++ Sbjct: 61 HKLQ-GRETQRKKRIRALILVPTRELAIQVADKVAQYGQHTGLTTLAMYGGVEEQAQKQR 119 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G DVL+ TPGR+LD + + + +EI+V+DEADRMLDMGFI I I +P Sbjct: 120 LIEGVDVLVATPGRLLDMYGQRAVYFEEVEIVVLDEADRMLDMGFIDSINKIIDRLPRDA 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT++ +++ +++ + +P I + ++ IE + KK ALL L Sbjct: 180 QYLLFSATLSHKVRDLAKTAVNDPFEISIAANQASKSNIEQWLITV--DKDKKSALLSHL 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +++ +IF K L LEK+G + A H Q R+++L +FK G I+ Sbjct: 238 I-TENNWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKIKY 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 M+A+ + ARG+DI ++ V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 297 MIATGVGARGIDIHELSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLC 356 Query: 359 AIEK----LIEKKV 368 IE LIE++V Sbjct: 357 MIESRLGHLIERRV 370 >gi|315127484|ref|YP_004069487.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] gi|315015998|gb|ADT69336.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] Length = 415 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 176/425 (41%), Positives = 252/425 (59%), Gaps = 30/425 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P ++ A+ Y PT IQ KTIP +L DV G AQTGTGKTA+FVLP+L Sbjct: 6 FSSLALDPLLLTAIEQNNYTTPTAIQHKTIPPILAGKDVMGSAQTGTGKTAAFVLPLLHK 65 Query: 63 L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L E G ARV +IL PTRELA QV +FEKY + ++ AL GG Q Sbjct: 66 LLNTTKKDEPGIARV-----VILTPTRELAQQVFASFEKYAQGTDIKGALAYGGASIGPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L + A V++ TPGR+LDH +G +++++++ LV DEADRMLDMGFI I+ I +P Sbjct: 121 IKAL-KTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIP 179 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT D + ++S+ L++P+ IEV+ +S A +E A +K L+ Sbjct: 180 GDRQTLLFSATFDDSVFELSKKLLKDPELIEVDKRNSAAVEVEQVIYAV--DEDRKRELV 237 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ ++ + +IF K+ L + K G +IHG+ Q +R + L NFKEG+ Sbjct: 238 SHMIGMKN-WRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGS 296 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +++VA+D+AARGLDIP + +V NF++P AE+Y+HRIGRTGRAG G A +LV+ ++ Sbjct: 297 TRVLVATDVAARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQW 356 Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 ++ IE L++ ++ WL G LN P K + N ARK DR KK Sbjct: 357 LLEEIEVLLDTRLAPQWLEGYEPDLNKP-PKDNRKNTNKARK-----------DRDKKRI 404 Query: 414 SSQKS 418 + Q++ Sbjct: 405 TGQRA 409 >gi|58038681|ref|YP_190645.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] gi|58001095|gb|AAW59989.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] Length = 431 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 158/390 (40%), Positives = 233/390 (59%), Gaps = 13/390 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L+ + A+ + GY PTPIQ IP +L+ D+ G+AQTGTGKTA+F LP+L Sbjct: 4 FAELKLAEPIQKALAEEGYTTPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILNH 63 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R A + R L+L PTRELA+Q+ ++F Y ++ + A++ GG+ Q + Sbjct: 64 IFTNRRPAPPKGVRALVLAPTRELASQIGESFAAYARHMKFSYAVVFGGVGQGRQIETTR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DVL+ PGR+LD + + ++ +EILV+DEADRMLDMGF+ IQ I +L+P RQT Sbjct: 124 RGVDVLVAAPGRLLDLIGQKHIDLSTLEILVLDEADRMLDMGFVRDIQRIMALLPKQRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ + L+NP ++V SST + I + + K AL+ LL+ Sbjct: 184 LLFSATMPPSISDLAHSLLKNPATVQVTPESSTVDRINQAVMFVDSGSKKDAALM--LLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S ++ ++F K + L K G AIHGN Q +R + ++ F+ G I+ +V Sbjct: 242 S-PSVARAVVFTLMKHEANKVAEFLNKNGIRAEAIHGNKSQGARERAMAGFRSGAIKALV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HVFN+D+PN E+Y+HRIGRT RAGR G A +L E + I Sbjct: 301 ATDIAARGIDVDEVSHVFNYDLPNVPESYVHRIGRTARAGREGCAVSLCDAEQRAWLKDI 360 Query: 361 EKLIEKKVDWLN--------GDLSSLNPPL 382 EK I K + + LS+ PP+ Sbjct: 361 EKKIGKPIPVVTDHPFHSEEARLSTQRPPV 390 >gi|255008452|ref|ZP_05280578.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] Length = 427 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 230/368 (62%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ ++IP++LQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R + + L+L PTRELA Q+ ++FE YG+ L A++ GG+ + Q L Sbjct: 61 QKLYKTDHRKGI-KALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALR 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +L+ TPGR+LD ++G + +N+++ V+DEADRMLDMGFI I+ I L+P RQT Sbjct: 120 GGIQILVATPGRLLDLISQGFVSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++ ++ + L P+++EV SST + I + + +K LL LL+ Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVY--FVEKKEKKDLLIHLLK 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++++ +IF K L L K G AIHGN Q +R + L+NFK T++ ++ Sbjct: 238 DA-SIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356 Query: 361 EKLIEKKV 368 +KLI K + Sbjct: 357 QKLIGKNI 364 >gi|94266993|ref|ZP_01290640.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93452307|gb|EAT02944.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 509 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 154/374 (41%), Positives = 230/374 (61%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+P V AV + GY PTPIQ I +L D+ G AQTGTGKTA+F LP+L Sbjct: 7 MHFSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + L+ R + P+ L+L PTRELA QVAD + Y ++ V L GG Q + L Sbjct: 67 SRLDTSR---KYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG ++ TPGRI DH RG L ++ + +VIDEAD ML MGF+ ++ I + P RQ Sbjct: 124 QRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238 LFSATMT E+ +++ L++P+ I + T ++T ETI +H ++ Q +K L ++ Sbjct: 184 VALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLV---QGLQKLDALTRI 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ + ++ +IF K V L L +GF+ A++G++ Q R K + K+GT+ + Sbjct: 241 LEA-EAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDI 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A VA +++ + Sbjct: 300 VVATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLH 359 Query: 359 AIEKLIEKKVDWLN 372 AIEK +++ L Sbjct: 360 AIEKATRQQIARLQ 373 >gi|90022676|ref|YP_528503.1| ATP-dependent RNA helicase DeaD [Saccharophagus degradans 2-40] gi|89952276|gb|ABD82291.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40] Length = 595 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 149/373 (39%), Positives = 231/373 (61%), Gaps = 11/373 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FA LGL+ ++ A+ D GY P+PIQ K+IP +L D+ G AQTGTGKTA+F LP+L Sbjct: 7 NFAQLGLNEHILKALTDVGYETPSPIQAKSIPELLAGRDILGQAQTGTGKTAAFALPILN 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ + + P+ L+L PTRELA QVA+ F+ Y + + + GG ++ Q + L+ Sbjct: 67 NLDLSQ---KAPQVLVLAPTRELAIQVAEAFQSYAHHLPGFHILPIYGGQGYDQQIRALK 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++DH +G L ++ +++LV+DEAD ML MGFI ++ + + P TRQ Sbjct: 124 RGVHVIVGTPGRVMDHMRKGTLKLDQLKVLVLDEADEMLRMGFIDDVEWVLTQTPPTRQI 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ KV+ +L +P I++ + TA+TI + + K ++L+ Sbjct: 184 ALFSATMPKEIAKVANKYLNDPALIKIEVKTQTADTIRQRYWGVSGHH--KLDATTRILE 241 Query: 241 SQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ D M IIF K + L L +G+S A++G+I Q R + + K+G I + Sbjct: 242 AEEFDAM---IIFVRTKTTTIELAEKLAARGYSSAALNGDISQNLRERTVEKLKKGQIDI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV N+D+P +E Y+HRIGRTGRAGR G+A VA +++ + Sbjct: 299 LVATDVAARGLDVDRISHVLNYDIPYDSEAYVHRIGRTGRAGRSGEAILFVAPREMRMLR 358 Query: 359 AIEKLIEKKVDWL 371 IEK K ++ + Sbjct: 359 TIEKATRKPIELM 371 >gi|298369527|ref|ZP_06980844.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282084|gb|EFI23572.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 456 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 154/366 (42%), Positives = 234/366 (63%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++V A+ + GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 4 FASLGLGSEIVSALTEQGYETPTPIQTAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 64 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 124 DLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT ++K++++F+ P+ +EV ++T+ +E +A A KK LL++ Sbjct: 184 RQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSSNVEQHIIAVDAL--KKRNLLER 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ + +IHG+ Q+SR++ L+ FKEG+++ Sbjct: 242 LIVDLQ-MNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ K + K Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360 Query: 358 DAIEKL 363 +AI++L Sbjct: 361 EAIKEL 366 >gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris] gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris] Length = 589 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 232/369 (62%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ S + A+ D ++ P+PIQ +TIPL+L+ D +AQTGTGKTA+F LP+L Sbjct: 7 NFSTFNFSSALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQ 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 L + + LIL PTRELA QVA+ FE K N+T+A+L GG + Q K+L Sbjct: 67 NLS---PEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGRILDH ++G LL+NN++ ++DEAD ML MGFI ++ I +P +Q Sbjct: 124 SGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQM 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++++ +L +P IE+ ++T ++IE F+ +A +K L ++L+ Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFL--FASVHQKPDALIRVLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + I+F K + + L++ G AIHG+I Q R +I++ FK+G I ++V Sbjct: 242 VED-YQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV N+D+P+ E Y+HRIGRTGRAGR G V ++ + I +I Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360 Query: 361 EKLIEKKVD 369 E+ ++++ Sbjct: 361 ERHTRQRIE 369 >gi|116253340|ref|YP_769178.1| DEAD box ATP-dependent RNA helicase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 576 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 149/375 (39%), Positives = 234/375 (62%), Gaps = 4/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LG+S +V + G PTPIQ +IPL+L+ D+ G+AQTGTGKTA+F LP++ Sbjct: 18 NFESLGVSKPIVATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 77 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L ++ R R RTLIL PTREL Q+A++ +K+ + +L + +++GG+ Q +L Sbjct: 78 KLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQL 137 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+G D+L+ TPGR+LD NR + + + LV+DEAD+MLD+GF+ ++ I +VP RQ Sbjct: 138 EKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQ 197 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++ +L +P ++EV P A+ +E +V + K LL++ L Sbjct: 198 TMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQ-YVHFVGGKNDKTELLRKSL 256 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ ++F K L LE G+SV +IHGN Q R + L F++G+I+ + Sbjct: 257 -TENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 315 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DIP V HV+N+D+P + Y+HRIGRT RAGR G A A ++ K + Sbjct: 316 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 375 Query: 360 IEKLIEKKVDWLNGD 374 IE+L+ + +G+ Sbjct: 376 IERLMGIDITVASGE 390 >gi|309792104|ref|ZP_07686577.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides DG6] gi|308225848|gb|EFO79603.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides DG6] Length = 422 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 151/364 (41%), Positives = 217/364 (59%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FAD L P ++ V G+ +PTPIQ +TIPL L ++ G+AQTGTGKTA+FVLP+L Sbjct: 1 MNFADFALHPALMQNVSAQGFTQPTPIQAQTIPLALSGQNLIGLAQTGTGKTAAFVLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R R + LI+ PTRELA Q+ D L A + GG+ E Q + L Sbjct: 61 QRLLQNRQRGT--QALIVTPTRELAEQINDTIRVLAHGTGLRSAPIYGGVGMEPQERALR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G ++++ PGR++DH RG ++ +++LV+DEADRMLDMGF+P IQ I S +P RQT Sbjct: 119 AGVEIVVACPGRLIDHLGRGSARLDGVQMLVLDEADRMLDMGFLPAIQRILSALPTRRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ ELQ+++ + K +++ A TI H +K ALL LL Sbjct: 179 MLFSATLPAELQQLAATTAPHAKLVQIGL-VRPAHTITHAIYPVPPH--RKTALLLDLLH 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F K L + ++G S +H N Q R L F++G +++V Sbjct: 236 KANS-GSVLVFTRTKHRANRLLQQIAREGHSAAVLHSNKSQNQRQLALDGFRDGRFRILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P+ + YIHRIGRTGRA R G AFTLV ED + I Sbjct: 295 ATDIAARGLDVERISHVINYDIPDTPDAYIHRIGRTGRATRSGDAFTLVTPEDASQVRQI 354 Query: 361 EKLI 364 E+ I Sbjct: 355 ERAI 358 >gi|81429227|ref|YP_396228.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp. sakei 23K] Length = 530 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 242/384 (63%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLSEPIMKAISRAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ ++ LI+ PTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 61 QNLDLDNPDIQ---ALIISPTRELAIQTQEELYRLGRDRKAKVQVVYGGADIRRQIRSLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+LDH NR + +++++ LV+DEAD MLDMGF+ I++I VP RQT Sbjct: 118 DHPQILVGTPGRLLDHINRRTVKLDHVKTLVLDEADEMLDMGFVDDIESIIKQVPEKRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ + K+ ++F+ NP+ I+V + TA+ I+ +V A+ +K ++ +L Sbjct: 178 LLFSATLPAPIMKIGKSFMTNPEMIKVKSKELTADLIDQYYV--RAKDFEKFDIMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + + +IF K+ V L L+ +G++ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-SPELTLIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG+ G + T V +++++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEMEYLRII 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E+L +K+ + L PP EK Sbjct: 355 EELTKKR-------MLPLQPPSEK 371 >gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32] gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32] Length = 443 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 161/409 (39%), Positives = 241/409 (58%), Gaps = 25/409 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F P + AV +AGYV PTPIQ + IP V+ DV G+AQTGTGKTA+FVLP+L Sbjct: 1 MNFQLFNFHPLISAAVKEAGYVTPTPIQTQAIPPVMDGKDVMGLAQTGTGKTAAFVLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R RVR LI+ PTRELA Q+ + G+ L A + GG+ Q +KL Sbjct: 61 QRLMEGPRGRVR---ALIIAPTRELAEQIHEAITVLGQQTRLKSATVYGGVNINPQIQKL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G ++++ PGR+LDH + + ++++E+LV+DEAD+M DMGF+P I+ I +P RQ Sbjct: 118 RNGVEIVVACPGRLLDHMGQRTIDLSHLEVLVLDEADQMFDMGFLPDIRRILGQLPKKRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++++++ L NP ++V + ++ T+ H + +Q+ K LL+ L Sbjct: 178 TLLFSATMPPDIKRLAGEILHNPVTVQVGS-TAPPVTVNHA-IYPVSQHLKTPLLLELLR 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++F K + LEK G+ ++ GN+ Q R L F++G+ Q++ Sbjct: 236 HTDK--QSVLVFTKTKHRAKRVGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGSFQIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+ ++AE YIHRIGRTGRA R G AFTLV ED + Sbjct: 294 VATDIAARGIDVTQISHVVNYDITDKAETYIHRIGRTGRASRSGDAFTLVTAEDTAMVRT 353 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408 IEK +L PLE+ + ++ N P P + F R Sbjct: 354 IEK--------------ALGAPLERRTVEGFDY---NVPAPHRDAEFAR 385 >gi|85705347|ref|ZP_01036446.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217] gi|85670220|gb|EAQ25082.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217] Length = 438 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 235/375 (62%), Gaps = 9/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++GL +V + + G +PTPIQ IP L DV G+AQTGTGKT +F LP++T Sbjct: 4 FDEMGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPLITR 63 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L E G+ + R+LIL PTRELA Q+ D+ K+ + + L++GG Q K+LE Sbjct: 64 LMEEPGKPAPKTIRSLILAPTRELAGQIRDSLLPLVKDSPIKIGLVVGGASINPQIKRLE 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD +R + ++ LV+DE D+MLD+GFI ++ I L+ RQT Sbjct: 124 QGIDILVATPGRLLDLIDRRAVRLDAARFLVLDEGDQMLDLGFIHALRRIAGLLAAERQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQL 238 ++FSATM ++++++ ++L+NPKR++V+ P A+ + E F+A + K LL +L Sbjct: 184 MMFSATMPKQMEELAGSYLRNPKRVQVSPPGKAADKVTQEVHFIAK----ASKPDLLIEL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + + ++F K L LE+ GF+V IHGN Q R + L F++G +++ Sbjct: 240 LGKHKS-ELALVFGRTKHGSDKLAKRLEQAGFAVATIHGNKSQGQRERALKAFRDGQVKI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIPDV HV+N+++PN +NY+HRIGRT RAG+ G A A +++ + Sbjct: 299 LVATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELK 358 Query: 359 AIEKLIEKKVDWLNG 373 I+K++ + +G Sbjct: 359 DIQKVLGTTIPVASG 373 >gi|226942043|ref|YP_002797117.1| RhlE3 [Laribacter hongkongensis HLHK9] gi|226716970|gb|ACO76108.1| RhlE3 [Laribacter hongkongensis HLHK9] Length = 582 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 173/472 (36%), Positives = 267/472 (56%), Gaps = 22/472 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADL L ++ A+ +AGY +PTPIQ + I VL D+ AQTGTGKTA F LP+L Sbjct: 4 ISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLL 63 Query: 61 TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L PR L+L PTRELAAQV ++ G + LT ++ GG+ + Q + Sbjct: 64 QRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKPQIE 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L + D+LI TPGR++D + + ++ +EILV+DEADRMLDMGFI ++ + L+P Sbjct: 124 ALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLPAE 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT D+++ +++ FL +P+ +EV+ P+ST E + H ++K LL Sbjct: 184 RQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHV--HLVDRNRKRELLTH 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S+ + ++F K L L K G AIHGN Q +R + LS FK+G+++ Sbjct: 242 LVESRQ-WQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ V N+++PN E+Y+HRIGRTGRAG G+A +LV +++K + Sbjct: 301 VLVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELKLL 360 Query: 358 DAIEKLIEKKVDWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 IE I + + G + L+ P + + +H R Q G + R + Sbjct: 361 ADIEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGR------QDGEGGEPRGQRNKK 414 Query: 416 QKSHIPLKESEKISKLQQDIQEND-------ADSLGFRGNMPAFMLPKNRGK 460 + + P + ++ + L D E+D A++ R PA P GK Sbjct: 415 KPHNKPARRADAPT-LPMDAPEHDSGAPAPVAEAQPPRQRKPAPGQPNPAGK 465 >gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae COH1] gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae COH1] gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813] Length = 528 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++ LI+ PTRELA Q + ++G++ + V + GG E Q K L Sbjct: 61 NKIHTEDNTIQ---ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGR+LD R L +N+IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEARQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F+++P+ +++ T ++ +V + ++K + +L+ Sbjct: 178 LLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYV--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ + Sbjct: 355 ENLTKKRMTGM 365 >gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968] gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A) [Legionella longbeachae NSW150] gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968] gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A) [Legionella longbeachae NSW150] Length = 569 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 154/367 (41%), Positives = 231/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA S + A+ D + P+PIQ +TIPL+L+ D +AQTGTGKTA+F LP+L Sbjct: 8 FAAFNFSDALNRALEDMKFTTPSPIQAQTIPLLLEGRDAIALAQTGTGKTAAFALPILQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L + V + LIL PTRELA QVA+ FE N ++TVA+L GG + Q K+L Sbjct: 68 LS---SSVHGTQALILAPTRELAIQVAEQFELLSANQRSITVAVLCGGQEYGRQLKQLRA 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRILDH ++G LL++N+ ++DEAD ML MGFI I+ I S +P +Q Sbjct: 125 GAQIVVGTPGRILDHLDKGTLLLDNLRTFILDEADEMLRMGFIEDIETIMSKLPEKKQIG 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++ +L NP IE+ ++T ++IE F+ +A +K L ++L Sbjct: 185 LFSATMPHRIRQIANTYLHNPAAIEIRAETATVKSIEQRFL--FASGHQKYDALLRVLAV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D + I+F K + + L++QG AIHG+I Q R +I++ F++G I ++VA Sbjct: 243 ED-YQGVIVFVRTKSSTEEVAEILQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ V HV N+D+P+ E Y+HRIGRTGRAGR G A V ++ + I +IE Sbjct: 302 TDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKEGRLITSIE 361 Query: 362 KLIEKKV 368 + +++ Sbjct: 362 RHTRQRI 368 >gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6] gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter chlorophenolicus A6] Length = 694 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 153/375 (40%), Positives = 232/375 (61%), Gaps = 9/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ +V+ A+ D GY KP+PIQ TIPL+L+ DV G+AQTGTGKTA+F +P L+ Sbjct: 52 FADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 111 Query: 63 LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 L + R + L+L PTRELA QVA+ F Y K+ + TV + GG + Q Sbjct: 112 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 171 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGA V++ TPGR++DH ++G L ++ ++ LV+DEAD ML MGF ++ I P R Sbjct: 172 LRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPEDR 231 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM +++++S+ +L +P I V T +ST I ++ +K + ++ Sbjct: 232 QVALFSATMPGQIRRMSKQYLNDPAEISVKTKTSTGTNIRQRYLQIMG--PQKLDAMTRI 289 Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ ++ +G+I F K +L L+ +GF AI+G+I Q+ R + + KEG I Sbjct: 290 LEVEEF--DGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRID 347 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR+G A + + + Sbjct: 348 ILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRNGDAILFMTPREKYLL 407 Query: 358 DAIEKLIEKKVDWLN 372 AIEK + V+ ++ Sbjct: 408 RAIEKATRQSVEQMH 422 >gi|119477648|ref|ZP_01617798.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143] gi|119449151|gb|EAW30391.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143] Length = 441 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 168/421 (39%), Positives = 254/421 (60%), Gaps = 18/421 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ AV + GY KPT IQ +TIP +L D+ +QTGTGKTASF+LP+L Sbjct: 1 MTFSTLGLSDPLLQAVEELGYTKPTAIQEQTIPTILAGRDLLAASQTGTGKTASFILPVL 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + R + R L+L PTRELA QV + +YGK +L +++GG+ Q + L Sbjct: 61 QKLTGERKRRAKRLRALVLVPTRELAIQVENTIHQYGKYLSLRSMVMVGGVDAAPQKQGL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD ++ L + +E+L++DEADRMLDMGFI I I +P RQ Sbjct: 121 IDGLDILVATPGRLLDMAHQRALYFDELEVLILDEADRMLDMGFIGDINKIIERLPTQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++DE++ +++ + +P I +N ++TA I + K ALL L+ Sbjct: 181 NLLFSATLSDEIRLLAKTAINDPIEISINATNATAPKISQWLITV--DKDSKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +IF K L LEK+G AIH Q R ++L++FK G I L+ Sbjct: 239 K-ENQWTQALIFIRTKHGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGNISLL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI D+ V N+D+P+ ++YIHRIGRTGRAG G+A +LV+++D K + A Sbjct: 298 VATGIAARGIDIDDLDRVVNYDLPDDDDDYIHRIGRTGRAGAIGEAVSLVSRDDFKRLCA 357 Query: 360 IEK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 IE+ LIE+++ ++G +++ P+ + NH K P+K +KK S Sbjct: 358 IERRLNQLIERRI--IDGFIAAKEVPVSVL-----NHVGKK---PEKKVAIATQKKQASK 407 Query: 416 Q 416 + Sbjct: 408 K 408 >gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM 44985] Length = 548 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 147/361 (40%), Positives = 228/361 (63%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P V+ AV + GY P+PIQ KTIP +L DV G+A TGTGKTA+F LP+L+ Sbjct: 11 FADLELHPSVLKAVQEVGYETPSPIQAKTIPALLNGQDVVGLAATGTGKTAAFALPVLSR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ ++R P+ L+L PTRELA QVA+ F +Y ++V + GG + Q + L R Sbjct: 71 IDP---KLRRPQALVLAPTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPVQLQALAR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G+ V++ TPGR++DH RG L + +++ LV+DEAD ML MGF ++ + + +Q Sbjct: 128 GSQVIVGTPGRVVDHLERGTLKLGDLKFLVLDEADEMLKMGFQEDVERVLASASQDKQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S+ +L++P + V ++T+E IE + T + +K LL ++L+ Sbjct: 188 LFSATMPGAIRKISKTYLRDPVEVTVKAATTTSENIEQRY--TLVAHHRKLDLLTRILEV 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I+F K+ ++ L +GF+ ++G+I Q +R + +S + G I ++VA Sbjct: 246 EQ-FSAMIVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILVA 304 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+DVP+ E+Y+HRIGRTGRAGR G ++ V + I AIE Sbjct: 305 TDVAARGLDVERITHVFNYDVPHDTESYVHRIGRTGRAGRAGVSYLFVTPRERSMIGAIE 364 Query: 362 K 362 + Sbjct: 365 R 365 >gi|261392319|emb|CAX49846.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013] Length = 457 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 162/423 (38%), Positives = 254/423 (60%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVTAQNTTNANVEQHIIAV--DTIQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 +AI+KL K+ +E+I+ + + P+K+ + R++N Y S Sbjct: 362 EAIKKLTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|330999267|ref|ZP_08322984.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis YIT 11859] gi|329575125|gb|EGG56676.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis YIT 11859] Length = 423 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 162/416 (38%), Positives = 239/416 (57%), Gaps = 22/416 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F LG +P++ + G+ PTPIQ+K IPLV Q +D+ AQTGTGKTA+FVLPML Sbjct: 5 FKTLGFAPQLEKLIEVNGFTSPTPIQMKAIPLVRQGYDLLAAAQTGTGKTAAFVLPMLQK 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I E + R+PR L+L PTRELAAQV + GK+ + A++ GG+ Q + Sbjct: 65 IIEEPTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAIA 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D L+ TPGR+LD N+G ++ IL++DEADRMLDMGF+P ++ I +P RQT Sbjct: 125 KGLDFLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPPDRQT 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + E++K++ FL P+ +E+ ++ + + A K +L+ L+ Sbjct: 185 LLFSATFSPEIKKLASEFLNKPESVEIERNKDSSLVRQTLYRVPKAD---KHTVLRDLI- 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++F K L L K G AIHG+ Q +R L FKE + ++V Sbjct: 241 VDNQWDQVLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N+++P +AE+Y+HRIGRTGRAG G+A++LV+ E++ AI Sbjct: 301 ATDIAARGLDIEKLPQVVNYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQFAAI 360 Query: 361 EKLIEK--------KVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408 EK I+K ++D+ + +S+ P N R+ P GF R Sbjct: 361 EKFIKKPLPLSDFPRLDYSDWKVSAPTKP--------QNKNRRPGPRRNGPAGFKR 408 >gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46] gi|60681162|ref|YP_211306.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343] gi|253563072|ref|ZP_04840529.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5] gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16] gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46] gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343] gi|251946848|gb|EES87130.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5] gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16] Length = 427 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 152/368 (41%), Positives = 230/368 (62%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ ++IP++LQ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R + + L+L PTRELA Q+ ++FE YG+ L A++ GG+ + Q L Sbjct: 61 QKLYKTDHRKGI-KALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALR 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +L+ TPGR+LD ++G + +++++ V+DEADRMLDMGFI I+ I L+P RQT Sbjct: 120 SGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++ ++ + L P+++EV SST + I + + +K LL LL+ Sbjct: 180 LFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVY--FVEKKEKKDLLIHLLK 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++++ +IF K L L K G AIHGN Q +R + L+NFK T++ ++ Sbjct: 238 D-TSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDI 356 Query: 361 EKLIEKKV 368 +KLI K + Sbjct: 357 QKLIGKNI 364 >gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris PB013-T2-3] gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris PB013-T2-3] Length = 498 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 148/363 (40%), Positives = 229/363 (63%), Gaps = 6/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ +GY + TPIQ +TIP+VL+ DV G AQTGTGKTA+F LP++ Sbjct: 1 MKFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ LI+ PTRELA Q + + GK+ ++ V ++ GG Q K L+ Sbjct: 61 EHVDTDNPNIQ---ALIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+ DH NR + + +I+ LV+DEAD ML+MGF+ I+ I P RQT Sbjct: 118 HHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++ E F+ NP+ + + T + ++ +V A+ +K ++ +L+ Sbjct: 178 LLFSATMPPEIKRIGEQFMTNPETVRIKAKELTTDLVDQYYVR--ARDYEKFDIMTRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F K+ V L L +G++ IHG++ Q R KI+ FK G + ++V Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKNGDLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P+ ++Y+HRIGRTGRAG HG + T V +++++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEI 354 Query: 361 EKL 363 EKL Sbjct: 355 EKL 357 >gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107] gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107] Length = 474 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 158/373 (42%), Positives = 227/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ A+ D GY PTPIQ + IP V+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFESLGLRADILRAIADEGYSAPTPIQQQAIPAVINGGDILAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEK---GRA-RVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + G+ + R P R LIL PTRELAAQV D+ YGK L A++ GG+ Q Sbjct: 61 EKLSQRDPGKTPQGRRPVRALILTPTRELAAQVHDSVRTYGKYLRLRSAVVFGGVSINPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L G D+L+ TPGR+LD N+ + + ++EILV+DEADRMLDMGFI I+ + +L+P Sbjct: 121 MMTLRGGVDILVATPGRLLDLVNQNAVYLQDVEILVLDEADRMLDMGFIHDIKKVLALLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT +D+++ +++ L P IEV ++ +E + + +K LL Sbjct: 181 KQRQNLLFSATFSDDIKALADKLLNQPTLIEVARRNTASERVSQRVLPV--DRHRKRELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ S + ++F K L L+ G S AIHGN Q +R K L +FK G Sbjct: 239 SHLI-SGGNWQQVLVFTRTKHGANKLTEQLQDDGISAAAIHGNKSQGARTKALEDFKTGR 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ ++A+D+AARG+DI + +V N+++PN E+Y+HRIGRTGRA G+A +LV ++ Sbjct: 298 IRALIATDIAARGIDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQAEGEAVSLVCVDEHS 357 Query: 356 HIDAIEKLIEKKV 368 + IEKLI++++ Sbjct: 358 FLRDIEKLIKREI 370 >gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae EF01-2] Length = 581 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 151/373 (40%), Positives = 241/373 (64%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P ++ AV + GY PTPIQ + IP VL HD+ AQTGTGKTA+F LP+L Sbjct: 1 MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPIL 60 Query: 61 TILEKGRARV-----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + A + R L+L PTRELAAQV ++ +YGK + ++ GG+ Q Sbjct: 61 HRLSQNPAAKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLAIDSTVVFGGVGMAPQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++L+RG D+L+ TPGR+LD +G + + ++++LV+DEADRMLDMGFI ++ + +LVP Sbjct: 121 IERLQRGVDILVATPGRLLDLQQQGFVDLASVQVLVLDEADRMLDMGFIQDVKKVLALVP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +Q+LLFSAT +D++++++ + L+NP+ I+V +ST + I V KK +L Sbjct: 181 GDKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNSTVQRIAQ--VIHPVGRGKKKQVL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + +++ D + ++F K ++ L K G + A+HGN Q +R + L++FK G Sbjct: 239 RHIIEQHDWSQV-LVFTRTKFGANSVAEFLTKNGVNAMALHGNKSQSARTQALADFKNGD 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+ +VA+D+AARG+DI ++ HV N+++PN E+Y+HRIGRTGRAG G+A +LV ++ Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGATGQAVSLVCMDEEG 357 Query: 356 HIDAIEKLIEKKV 368 + IE+ ++++ Sbjct: 358 FMMDIERFTQQQI 370 >gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4] gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4] Length = 679 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 152/361 (42%), Positives = 221/361 (61%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD+GL+P V AV D GY P+ IQ TIPLVL+ DV G+AQTGTGKTA+F LP+L++ Sbjct: 51 FADMGLAPAVAKAVRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGKTAAFALPILSL 110 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ LIL PTRELA QVA+ Y + V + GG + Q L R Sbjct: 111 IDPS---VKSPQALILAPTRELALQVAEACVTYSAGMPQVNVLPIYGGQAYGIQLSGLRR 167 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++ + LV+DEAD ML MGF ++ I S P + Q Sbjct: 168 GAQIIVGTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPESTQVA 227 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++S+ +L +P ++V + +STA TI+ +V + K L ++L+ Sbjct: 228 LFSATMPSAIRRISQKYLTDPTEVKVASKTSTAPTIQQRYV--LVNHRDKLDALTRILEV 285 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K L L +GFS I+G+I Q R + + K+G ++VA Sbjct: 286 ED-FDAMIMFVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVA 344 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HV N+D+P+ E+YIHRIGRTGRAGR G A V + + + IE Sbjct: 345 TDVAARGLDVPRISHVVNYDIPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQIE 404 Query: 362 K 362 + Sbjct: 405 R 405 >gi|254476796|ref|ZP_05090182.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11] gi|214031039|gb|EEB71874.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11] Length = 447 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 152/374 (40%), Positives = 236/374 (63%), Gaps = 5/374 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ +GL K++ + + G+ +PTPIQ + IP L DV G+AQTGTGKTA+F +P++ Sbjct: 3 EFSTMGLPEKLLSRIDEMGFKEPTPIQARAIPHALNGKDVLGLAQTGTGKTAAFGVPLIA 62 Query: 62 -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ GR + R L+L PTRELA Q+A + + L L++GG+ Q +L Sbjct: 63 QMMQYGRKPAAKTVRGLVLAPTRELANQIAATLKGLTEGTPLKTGLVVGGVSINPQISRL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+LI TPGR+LD +RG L + + + LV+DEAD+MLD+GFI ++ I+SL+P RQ Sbjct: 123 SRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPQERQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM ++ +++ ++L P RIEV+ P A+ I V A+ K L + L Sbjct: 183 TMLFSATMPKQMNEIANSYLNAPVRIEVSPPGKAADKITQS-VHFIAKAEKLSLLKELLA 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D + ++F K + L +L GFS AIHGN Q R + L+ FK G ++++ Sbjct: 242 EHKD--ERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALAAFKSGEVKIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIPDV V+N+++PN + Y+HRIGRT RAG+ G+A A +++ + A Sbjct: 300 VATDVAARGLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMDELKA 359 Query: 360 IEKLIEKKVDWLNG 373 I+K ++ + +G Sbjct: 360 IQKTMKITIPVASG 373 >gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2] Length = 588 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 152/374 (40%), Positives = 238/374 (63%), Gaps = 11/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L ++ A+ GY KP+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML Sbjct: 7 MTFKDLKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L+L PTRELA QVA+ F+ Y ++ + V + GG ++ Q ++L Sbjct: 67 ANIDPEQ---RKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQIRQL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH R L ++ ++ LV+DEAD ML MGFI ++ I S P RQ Sbjct: 124 KRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPAERQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237 T LFSATM ++K+++ +L++PK +++ + STA TI +C VA + + +++ Sbjct: 184 TALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRIME- 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ D M IIF K V L L +G+ V ++G+I Q +R + + K+G I Sbjct: 243 -VERFDGM---IIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNID 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARGLD+ V HV N+DVP +E+Y+HRIGRTGRAGR G A ++ + + + Sbjct: 299 ILVATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHREKRML 358 Query: 358 DAIEKLIEKKVDWL 371 +IEK ++ ++ + Sbjct: 359 FSIEKTTKQPIEVM 372 >gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase, DEAD-box family [Streptococcus mitis B6] gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase, DEAD-box family [Streptococcus mitis B6] Length = 521 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L LS ++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNKLNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L + +I L++DEAD ML+MGF+ I+ I S VP +RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLQDIGTLILDEADEMLNMGFLEDIEAIISRVPESRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ Q +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678] Length = 523 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|209544711|ref|YP_002276940.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209532388|gb|ACI52325.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 427 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 153/377 (40%), Positives = 233/377 (61%), Gaps = 19/377 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADL L+P ++ A+ + GY PTPIQ ++IP++L+ D+ G+AQTGTGKTA+F LP+L Sbjct: 3 MTFADLSLAPTLLRALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLL 62 Query: 61 TILE-------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L KG ARV L+L PTREL +Q+AD FE +G++ +V + GG+ Sbjct: 63 HRLAMAPRPAPKGGARV-----LVLAPTRELVSQIADGFESFGRHQPPSVTTIFGGVSQV 117 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L+ G D+++ PGR+LD ++G ++ +E LV+DEAD+MLDMGF I+ I + Sbjct: 118 HQVNALKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVAT 177 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKK 231 +P R T+LFSATM + ++E+ L++P ++E+ PS+T + IE FV + + Sbjct: 178 LPKDRHTVLFSATMPKSIATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAAL 237 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 A+L+ + ++F QK +C + + G + A+HGN Q R + L F Sbjct: 238 LAMLR-----TPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAF 292 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + GT Q++VA+D+AARG+D+ V HVFN D+P+ E+Y+HRIGRTGRAGR+G A TL Sbjct: 293 RSGTAQVLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDA 352 Query: 352 EDIKHIDAIEKLIEKKV 368 E + +E+ I + + Sbjct: 353 EQRAWLRDVEREIGRAL 369 >gi|291326441|ref|ZP_06124507.2| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131] gi|291314194|gb|EFE54647.1| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131] Length = 442 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 172/445 (38%), Positives = 257/445 (57%), Gaps = 11/445 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+DL L+ +++ A+ + GY PTPIQ + IP VL +D+ AQTGTGKTA F LP+L Sbjct: 4 FSDLALNEEILLAINELGYESPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQK 63 Query: 62 -ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I + R P R LIL PTRELAAQVA+N ++Y ++ + ++ GG+ Q KL Sbjct: 64 LITTPRSGKDRKPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR+LD ++ + ++ +E+ V+DEADRMLDMGFI I+ + + +P RQ Sbjct: 124 RGGVDILIATPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVINKLPKKRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY--SKKCALLQQ 237 LLFSAT +DE+++++ L NP IEV +S +E VA Y K+ A L Sbjct: 184 NLLFSATFSDEIKQLANKLLNNPVTIEVAPRNSASEQ-----VAQYVHLVDKKRKAELLS 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + ++ + ++F K L L K G AIHGN Q +R + L++FK G I+ Sbjct: 239 FMIGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIR 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + +V NF++PN AE+Y+HRIGRTGRA G A +LV ++ K + Sbjct: 299 VLVATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLL 358 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 IEKL++K + + + +P + K + Q R ++ G R+ N S K Sbjct: 359 KDIEKLLKKSIPLMAIEGYEPDPSI-KAEPIQKTPQRNERRSGDRNQGKPPRRSNSPSSK 417 Query: 418 SHIPLKESEKISKLQQDIQENDADS 442 S Q+ +++ +DS Sbjct: 418 PSSGKGASSPWKNAQKKVKQGRSDS 442 >gi|29347295|ref|NP_810798.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|29339194|gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] Length = 374 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 230/371 (61%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L ++ ++ A+ + GY PTPIQ K IP+ L + D+ G AQTGTGKTASF +P++ Sbjct: 1 MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L KG + + LIL PTRELA Q+++ E Y K + ++ GG+ Q Sbjct: 61 QHLHLNKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDM 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD N+G + ++NI+ V+DEADRMLDMGFI I+ I +P + Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM D + ++ + L+NP +I V SST ++I+ + + + +K LL + Sbjct: 181 QTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQ--LVYFVEKKEKSLLLISI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ + ++ +IF K N + L K G AIHGN Q +R L NFK G ++ Sbjct: 239 LQKSED-RSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+A+RG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K I+ Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQIN 357 Query: 359 AIEKLIEKKVD 369 I+KL KK++ Sbjct: 358 DIQKLTGKKLN 368 >gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059] Length = 523 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|86159377|ref|YP_466162.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775888|gb|ABC82725.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 487 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 154/399 (38%), Positives = 235/399 (58%), Gaps = 15/399 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LS K + A+ AG+ PTPIQ + IP L DV G A TGTGKTA+F+LP++ Sbjct: 17 FADLNLSEKTLHALERAGFEHPTPIQTQAIPPALAGRDVIGAAATGTGKTAAFLLPIIER 76 Query: 63 LEKGRARVR--------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L + R PR L+L PTRELA Q+A +++G+ ++ AL+IGG+ A Sbjct: 77 LSGAATKDRPAAAHARPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVGMGA 136 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q+ L R +V++ TPGR++DH +G ++ +E+LV+DEADRMLDMGF P ++ I + V Sbjct: 137 QSAAL-RDHEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARV 195 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQTLLFSATM E+ + L++P R+EV + AE E + +K L Sbjct: 196 PKVRQTLLFSATMAGEVADFARAHLRDPVRVEVARSGTLAERAEQRVF--LPEQREKLPL 253 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L LL+ D + ++F K+ + +L++ G V IH + Q R L F++G Sbjct: 254 LMALLEDDDL--STLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDG 311 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +++VA+D+AARG+D+ ++GHV NFD+P+ E+Y+HR+GRT R G+A V+ E++ Sbjct: 312 QYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFVSPEEL 371 Query: 355 KHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHN 391 + IE+L + + + ++ L++ D AQ N Sbjct: 372 DLLRDIERLTRAPIPRAEVPREHATFQAELQRADAAQAN 410 >gi|320353120|ref|YP_004194459.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121622|gb|ADW17168.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus DSM 2032] Length = 428 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 154/395 (38%), Positives = 235/395 (59%), Gaps = 9/395 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D + + A+ G+ PTPIQ + IP VL+R D+ G+AQTGTGKTA+F+LP Sbjct: 1 MSFTDFHFNEHITHAISHCGFTAPTPIQQQAIPSVLERRDLLGLAQTGTGKTAAFILP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+ R + R LI+ PTRELA Q+ D +N L + GG+ +AQ KL Sbjct: 59 TVQHLMRTQAHHVRALIIAPTRELAEQINDFTRAIIRNTRLKSIAVYGGVSKQAQITKLR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+++ PGR+LD N + ++ ++ L++DEAD M D GF+P I+ I +P RQ+ Sbjct: 119 GGVDIVVACPGRLLDLLNDKAVDLSRVDTLILDEADHMFDKGFLPDIRRILRRLPAERQS 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM DE++ ++E+ L +P +++N P+ + ++I H A + +K LL QLL+ Sbjct: 179 LVFSATMPDEIRHLAEDILTDPVTVQIN-PTRSVQSISHRLYAV--EQEQKTDLLLQLLK 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + M +IF K NL L + GF ++ GN+ Q R + L FK G ++V Sbjct: 236 DE-AMATTLIFTRTKHKAKNLAQKLAQSGFKATSLQGNLSQNRRQQALDGFKTGAFTILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+D+P+ AE YIHR GRTGRA R G+A T +ED + I I Sbjct: 295 ATDIAARGIDVNGISHVINYDMPDTAEAYIHRTGRTGRAARTGEALTFATREDSRMIRLI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 E+ I+ +++ +GD++ L P + + +HA K Sbjct: 355 ERSIDGRMN--HGDVAEL-PAVRSAVPSVRSHAGK 386 >gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644] gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644] Length = 506 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 154/384 (40%), Positives = 235/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGL ++ A+ +G+ + TPIQ TIPLVL DV G AQTGTGKTA+F LP+L Sbjct: 10 LKFNELGLEEDLLKAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPIL 69 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ +++ PTRELA Q + + GK+ V ++ GG Q K L+ Sbjct: 70 QHVDVKEEHIQ---AIVVSPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIKLLK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+LDH NR + +++++ LV+DEAD MLDMGF+ I+ I VP RQT Sbjct: 127 HVPQILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQT 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + E F+ P+ +++ T + ++ FV A+ +K ++ ++L Sbjct: 187 LLFSATMPKAIRSIGEKFMHEPQVVKIKAKELTTDLVDQYFVK--AREYEKFDIMTRILD 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F K+ V L LE +G++ IHG++ Q+ RM IL FKEG + ++V Sbjct: 245 VQ-APELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG HG + T V +++++ I Sbjct: 304 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGISVTFVTPNEMEYLRVI 363 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E+L +K+ + L PP EK Sbjct: 364 ERLTKKR-------MEPLRPPTEK 380 >gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008] gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM 2008] Length = 515 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +S V+ A+ D G+ +PTPIQ + IP+ + D+ G AQTGTGKTA+F LP + Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+ R + +IL PTRELA QVA+ K + N+T + GG Q + L++ Sbjct: 62 LERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH +RG + ++++++V+DEAD ML+MGF+ I I +P QTLL Sbjct: 122 PQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +Q+++E +L P I + T + IE ++ Q +K +L +L Q Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 T + IIF K+ V + L+K+G+ IHG++ Q+ R ++ F+EGTI ++VA+ Sbjct: 240 -TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y HR+GRTGRAG+ G+AFT V +++H+ AIE+ Sbjct: 299 DVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIER 358 Query: 363 LIEKKV 368 L ++K+ Sbjct: 359 LTKRKI 364 >gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp. MWYL1] gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1] Length = 418 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 166/410 (40%), Positives = 244/410 (59%), Gaps = 11/410 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ V + GY PTPIQ+ IP VL + D+ AQTGTGKTA+F LP+L Sbjct: 1 MSFASLGLHQDIIQQVTELGYTTPTPIQLAAIPAVLAKKDLMAGAQTGTGKTAAFALPLL 60 Query: 61 -TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL+ K + + L+L PTRELA QV +F KY + + GG Q Sbjct: 61 HQILQAKDSNTTKGIQVLVLTPTRELAQQVHASFLKYSAKLPIQSVVAYGGASINMQLDA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+L+ + + ++ ++ LV+DEADRMLDMGFI IQ I +P +R Sbjct: 121 LRQGCDVLVATPGRLLELIMKNLIDLSKLQTLVLDEADRMLDMGFIIDIQRILKKLPKSR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT DE+ +S+ L++P+ IEVN+ ++TA +E A +K ALL L Sbjct: 181 QTLFFSATFNDEIFALSKTLLKDPQLIEVNSRNTTATQVEQTIYAV--DQDRKSALLSFL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S++ + +IF K+ L +EK G + +IHG+ Q +R ++L++FK G ++ Sbjct: 239 IGSKN-WQQVLIFTRTKQGADELAKEMEKDGIATQSIHGDKSQGARDRVLADFKAGKVRA 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + +V N ++P AE+YIHRIGRTGRAG G A +LV++++ + Sbjct: 298 LVATDVAARGIDIEQLQYVVNHELPYNAEDYIHRIGRTGRAGSTGLAISLVSEKERYLLT 357 Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406 IEKL+ ++ WL G P L K++ AQ + K+ G Sbjct: 358 DIEKLVGEQFVPQWLPG----FEPDLNKVNNAQKKREPSKKELRAKALGI 403 >gi|304413058|ref|ZP_07394531.1| RNA helicase [Candidatus Regiella insecticola LSR1] gi|304283901|gb|EFL92294.1| RNA helicase [Candidatus Regiella insecticola LSR1] Length = 446 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 159/371 (42%), Positives = 236/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ A+ + Y PTPIQ K IP VL D+ AQTGTGKTA F LP+L Sbjct: 36 MSFDSLGLNADILRAITEQKYSAPTPIQEKAIPEVLAGRDLMASAQTGTGKTAGFTLPLL 95 Query: 61 TILEKGRARV--RMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + ++ + R P R LIL PTRELAAQ+ DN + Y + L ++ GG+ Q Sbjct: 96 QLLSENQSLIKGRRPVRALILTPTRELAAQIGDNVKNYSEFLKLRSMVVFGGVSINPQMM 155 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+L+ TPGR+LD ++ + + IEILV+DEADRMLDMGFI I+ I + +P Sbjct: 156 KLRGGVDILVATPGRLLDLEHQNAVDLAKIEILVLDEADRMLDMGFIHDIRRILAKLPAK 215 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +++++ +++ L NP IEV+ ++TA+ I + S+K LL Sbjct: 216 RQNLLFSATFSNDIKLLAKKLLNNPAYIEVSPGNTTAKHITQRV--HFVDKSRKRQLLSY 273 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ SQ+ + ++F K +L L K G + AIHGN Q +R + L++FK+G I+ Sbjct: 274 MIGSQN-WQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIR 332 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA G+A +LV ++ K + Sbjct: 333 VLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAECSGEAISLVCVDEHKLL 392 Query: 358 DAIEKLIEKKV 368 IE+L++ ++ Sbjct: 393 RDIERLLKNEI 403 >gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601] gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601] Length = 512 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 163/399 (40%), Positives = 240/399 (60%), Gaps = 14/399 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ GL KVV +V G+ + TPIQ KTIPL L D+ G AQTGTGKTA+F LP++ Sbjct: 6 FSEFGLDEKVVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPIINK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ ++ LI+ PTRELA QV++ K + + V + GG Q + L++ Sbjct: 66 IDQKNNNIQ---ALIIAPTRELAIQVSEELYKLSYDKHARVLAVYGGSDISRQIRSLKKN 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LD NR L + N+E LV+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 123 PQIIVGTPGRMLDLINRRVLKLENVETLVLDEADEMLNMGFIDDIEAILKSVPSERQTLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F+ +P+ + + TA IE FV + + +K +L +LL Q Sbjct: 183 FSATMPDPIRRIAERFMHSPELVRIKAKEMTALLIEQFFVKVHEK--EKFDVLSRLLDVQ 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIF K+ V L +L+ +G+ IHG++ Q RM +L FKEG I ++VA+ Sbjct: 241 -APELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 300 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEE 359 Query: 363 LIEKKVD------WLNGDLSSLNPPLEKID--IAQHNHA 393 +K+++ W L EKI+ I Q N A Sbjct: 360 TTKKRMEPLKPPTWDEAFAGQLRVAQEKIEEAITQENLA 398 >gi|332285792|ref|YP_004417703.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7] gi|330429745|gb|AEC21079.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7] Length = 550 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 150/377 (39%), Positives = 230/377 (61%), Gaps = 18/377 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ AVL AG+ +PT +Q IP L HD+ +QTG+GKTA+F+LP L Sbjct: 1 MSFDTLGLAPSLLSAVLKAGFTEPTSVQAAAIPKALAGHDLMVSSQTGSGKTAAFMLPAL 60 Query: 61 TILEKGRARVRMP-------RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112 + MP + L+L PTRELA QVA+ ++YG + +L A+++GG+P+ Sbjct: 61 NRISN------MPPNKGSGVQVLVLTPTRELAMQVAEATKQYGAHLKDLRTAVVVGGMPY 114 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 AQ K L R DVL+ TPGR++DH ++ ++ + LV+DEADRMLDMGFI I+ I Sbjct: 115 GAQLKALSRRVDVLVATPGRLIDHLQAKRVNLSTVHTLVLDEADRMLDMGFIEDIETIVG 174 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKK 231 P RQTLLFSAT+ + +++ +++P +IE++ I + YA K Sbjct: 175 RTPSDRQTLLFSATLDGTIARLAAKMMRDPLQIEISGQKQKHTNITQSLL--YADDNGHK 232 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL LL+ + + I+F + K+ +L L QGF+ A+HG+++QR R + L Sbjct: 233 MRLLDHLLRDSN-LDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGML 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 ++G ++++VA+D+AARG+D+ + H N+D+P +AE+Y+HRIGRTGRAGR G A+TL Sbjct: 292 QKGKLRILVATDVAARGIDVQGISHAVNYDLPMQAEDYVHRIGRTGRAGRSGLAYTLATH 351 Query: 352 EDIKHIDAIEKLIEKKV 368 + + IE I + + Sbjct: 352 SERHKVRRIEHFIGQPI 368 >gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150] Length = 523 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|302341870|ref|YP_003806399.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM 2075] gi|301638483|gb|ADK83805.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM 2075] Length = 573 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 153/366 (41%), Positives = 223/366 (60%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLSP + AV + G+ PTPIQ IPL+L+ DV G AQTGTGKTA+F LP+L Sbjct: 18 FDQLGLSPLLTAAVTEQGFTSPTPIQTAMIPLMLEGRDVIGQAQTGTGKTAAFGLPLLHN 77 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + G V + L+L PTRELA QVA+ + YG+ V + GG P+ Q +L +G Sbjct: 78 ISPG---VGQAQALVLAPTRELAIQVAEALQGYGRKMGARVMAVYGGAPYGLQISRLRKG 134 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR+LD + L ++ +E +VIDEAD ML MGFI IQ I P RQT L Sbjct: 135 VDVVVGTPGRVLDLIGQKALRLDMVETVVIDEADEMLSMGFIADIQAILEATPSQRQTAL 194 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++S++++ P+ + V+ T E +E + K A L +LL+ Sbjct: 195 FSATLPPAIRQMSQSYMVEPQSVSVSPRQLTVEAVEQRYY--LLDERDKLAALCRLLEV- 251 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + + +IFC K L L +GF+ AI+G++ Q +R+++L F+ ++L+VA+ Sbjct: 252 EPVASALIFCRTKAGTGQLADELSARGFAAEAINGDLSQEARIRVLGRFRNNQLKLLVAT 311 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI D+ HV NFD P E Y+HRIGRTGRAGR G A +L++ +D + IE Sbjct: 312 DVAARGLDIDDISHVINFDPPQDPEVYVHRIGRTGRAGRDGVAISLLSPKDRWLLARIEA 371 Query: 363 LIEKKV 368 + ++ Sbjct: 372 YAKARL 377 >gi|253572829|ref|ZP_04850228.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14] gi|251837561|gb|EES65653.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14] Length = 374 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 230/371 (61%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L ++ ++ A+ + GY PTPIQ K IP+ L + D+ G AQTGTGKTASF +P++ Sbjct: 1 MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L KG + + LIL PTRELA Q+++ E Y K + ++ GG+ Q Sbjct: 61 QHLHLNKGEGKRSGIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDM 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD N+G + ++NI+ V+DEADRMLDMGFI I+ I +P + Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM D + ++ + L+NP +I V SST ++I+ + + + +K LL + Sbjct: 181 QTLFFSATMPDTIIALTNSLLKNPLKIYVTPKSSTVDSIKQ--LVYFVEKKEKSLLLISI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ + ++ +IF K N + L K G AIHGN Q +R L NFK G ++ Sbjct: 239 LQKSED-RSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+A+RG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K I+ Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQIN 357 Query: 359 AIEKLIEKKVD 369 I+KL KK++ Sbjct: 358 DIQKLTGKKLN 368 >gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio angustum S14] gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio angustum S14] Length = 427 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 159/389 (40%), Positives = 228/389 (58%), Gaps = 19/389 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L P ++ A+ + GY PT +Q + IPL L+ DV AQTGTGKTA+F LP+L Sbjct: 1 MSFQSLNLHPNLLKALTELGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFALPLL 60 Query: 61 --------------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106 T +E R LIL PTRELA QV D+ Y K + VA+ Sbjct: 61 QRLMTLPSQAEQVSTAIENNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTEIKVAVA 120 Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166 GG Q K L GA++L+ TPGR+LDH G + ++ +E V+DEADRMLDMGFI Sbjct: 121 YGGTSMNVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVD 180 Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 IQ I +P RQTL FSAT + +++K++ + L NPK +EV ++ AET+E Sbjct: 181 IQRIMKRMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQMVYPV-- 238 Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 +K LL L+ S++ + ++F K+ L L G +I+G+ Q +R + Sbjct: 239 DKHRKAELLAYLIGSRN-WRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQR 297 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L +FK G +++VA+D+AARGLDI + +V NFD+P +AE+Y+HRIGRTGRAG G A Sbjct: 298 ALDDFKSGKTRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAI 357 Query: 347 TLVAKEDIKHIDAIEKLIEKKV--DWLNG 373 TL++ ++ + AIE+L++ ++ WL G Sbjct: 358 TLMSLDEEWALKAIEELLDSRLPQQWLEG 386 >gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056] Length = 523 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44] gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44] Length = 515 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +S V+ A+ D G+ +PTPIQ + IP+ + D+ G AQTGTGKTA+F LP + Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+ R + +IL PTRELA QVA+ K + N+T + GG Q + L++ Sbjct: 62 LERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH +RG + ++++++V+DEAD ML+MGF+ I I +P QTLL Sbjct: 122 PQIIVATPGRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +Q+++E +L P I + T + IE ++ Q +K +L +L Q Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 T + IIF K+ V + L+K+G+ IHG++ Q+ R ++ F+EGTI ++VA+ Sbjct: 240 -TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y HR+GRTGRAG+ G+AFT V +++H+ AIE+ Sbjct: 299 DVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIER 358 Query: 363 LIEKKV 368 L ++K+ Sbjct: 359 LTKRKI 364 >gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745] gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27] gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745] gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27] Length = 515 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +S V+ A+ D G+ +PTPIQ + IP+ + D+ G AQTGTGKTA+F LP + Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+ R + +IL PTRELA QVA+ K + N+T + GG Q + L++ Sbjct: 62 LERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH +RG + ++++++V+DEAD ML+MGF+ I I +P QTLL Sbjct: 122 PQIIVATPGRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +Q+++E +L P I + T + IE ++ Q +K +L +L Q Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 T + IIF K+ V + L+K+G+ IHG++ Q+ R ++ F+EGTI ++VA+ Sbjct: 240 -TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y HR+GRTGRAG+ G+AFT V +++H+ AIE+ Sbjct: 299 DVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIER 358 Query: 363 LIEKKV 368 L ++K+ Sbjct: 359 LTKRKI 364 >gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1] Length = 523 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160] gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408] gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49] Length = 523 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral taxon 158 str. F0412] gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral taxon 158 str. F0412] Length = 523 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +S V+ A+ D G+ +PTPIQ + IP+ + D+ G AQTGTGKTA+F LP + Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+ R + +IL PTRELA QVA+ K + N+T + GG Q + L++ Sbjct: 62 LERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH +RG + ++++++V+DEAD ML+MGF+ I I +P QTLL Sbjct: 122 PQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +Q+++E +L P I + T + IE ++ Q +K +L +L Q Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 T + IIF K+ V + L+K+G+ IHG++ Q+ R ++ F+EGTI ++VA+ Sbjct: 240 -TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y HR+GRTGRAG+ G+AFT V +++H+ AIE+ Sbjct: 299 DVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIER 358 Query: 363 LIEKKV 368 L ++K+ Sbjct: 359 LTKRKI 364 >gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748] gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748] Length = 521 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +S V+ A+ D G+ +PTPIQ + IP+ + D+ G AQTGTGKTA+F LP + Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+ R + +IL PTRELA QVA+ K + N+T + GG Q + L++ Sbjct: 62 LERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH +RG + ++++++V+DEAD ML+MGF+ I I +P QTLL Sbjct: 122 PQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +Q+++E +L P I + T + IE ++ Q +K +L +L Q Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 T + IIF K+ V + L+K+G+ IHG++ Q+ R ++ F+EGTI ++VA+ Sbjct: 240 -TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y HR+GRTGRAG+ G+AFT V +++H+ AIE+ Sbjct: 299 DVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIER 358 Query: 363 LIEKKV 368 L ++K+ Sbjct: 359 LTKRKI 364 >gi|260769757|ref|ZP_05878690.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972] gi|260615095|gb|EEX40281.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972] Length = 397 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 164/407 (40%), Positives = 243/407 (59%), Gaps = 17/407 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV + GY KPT IQ K IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSKLGLSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ GR R + R LIL PTRELA QVAD +YG++ LT + GG+ +AQ ++ Sbjct: 61 HKLQ-GRETQRKKRIRALILVPTRELAIQVADKVAQYGQHTGLTTLAMYGGVEEQAQKQR 119 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G DVL+ TPGR+LD + + + +E++V+DEADRMLDMGFI I I +P Sbjct: 120 LIEGVDVLVATPGRLLDMYGQRAVYFEEVEMVVLDEADRMLDMGFIDSINKIIDRLPRDA 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT++ +++ +++ + +P I + ++ IE + KK ALL L Sbjct: 180 QYLLFSATLSHKVRDLAKTAVNDPFEISIAANQASKSNIEQWLITV--DKDKKSALLSHL 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +++ +IF K L LEK+G + A H Q R+++L +FK G I+ Sbjct: 238 I-TENNWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKIKY 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 M+A+ + ARG+DI ++ V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 297 MIATGVGARGIDIHELSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLC 356 Query: 359 AIEK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 IE LIE++V + G P + + I+ N+ K+ +PQ Sbjct: 357 MIESRLGHLIERRV--VEG-----FEPKKPVPISILNYVPKSKRMPQ 396 >gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12D] gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D] Length = 627 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 155/388 (39%), Positives = 233/388 (60%), Gaps = 23/388 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++V A+ + Y PTP+Q + IP L D+ +QTG+GKTA+F+LP + Sbjct: 35 FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94 Query: 63 L----EKGRARV---------RMPRT-------LILEPTRELAAQVADNFEKYGKNYNLT 102 + E R R+ R PR L+L PTRELA QV +YG++ Sbjct: 95 ISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 154 Query: 103 V-ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161 V A ++GG+P+ Q L R D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM Sbjct: 155 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 214 Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221 GF I+ I P TRQ L+FSATM +++++E ++ P+RIE+ IE Sbjct: 215 GFSDDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERL 274 Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 T S K LL LL+ ++K I+F K++ +L L + GFS A+HG++ Q Sbjct: 275 HFT-DDMSHKQQLLDHLLRDA-SLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQ 332 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 +R + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR Sbjct: 333 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 392 Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 G A LV D IE+ +++++D Sbjct: 393 SGIAINLVNHNDTFQWRRIERFVDRRID 420 >gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115] Length = 523 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNRIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC 25986] gi|133775654|gb|EBA39474.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC 25986] Length = 749 Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 159/402 (39%), Positives = 235/402 (58%), Gaps = 26/402 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +++ A+ + GY PTP+Q +IP+VL+ D+ AQTGTGKTA+F+LP + Sbjct: 48 FDELGLSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMNN 107 Query: 63 LE---------------------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101 LE K R P L++ PTRELA Q+ + K Sbjct: 108 LEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADVTGH 167 Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161 ++GG+ ++ Q L+ G D+L+ TPGR++D +G ++ +++LV+DEADRMLDM Sbjct: 168 VAVTVVGGVSYKPQTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDM 227 Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221 GF+P ++ I P RQTLLFSAT+ +E + + +P R+E+ +STA+T++ F Sbjct: 228 GFLPAVRRIVRETPAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATSTADTVDQ-F 286 Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 V + +K LL + L+ + + I+F K + C LE++G AIHGN Q Sbjct: 287 VFPVSIEAKNN-LLPEFLKKEGPERT-IVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQ 344 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 R + LS F++GT+ ++VA+D+ ARG+DI DV +V NFDVP +YIHRIGRTGRAG Sbjct: 345 AQRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRAGE 404 Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD-WLNGDLS-SLNPP 381 G A T V ++D+ IEKL++K D + GDL NPP Sbjct: 405 LGWAITFVTEQDVDEFYEIEKLMDKTADIYDAGDLHVGPNPP 446 >gi|239995610|ref|ZP_04716134.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126] Length = 483 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 156/367 (42%), Positives = 225/367 (61%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ A+ G+ P+PIQ K IP VLQ DV AQTGTGKTA F LP+L Sbjct: 1 MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R LIL PTRELAAQV ++ + + L A++ GG+ Q KL Sbjct: 61 QRLMEGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVLI TPGR+LD + + + + +E+LV+DEADRMLDMGFI I+ + L+P RQ Sbjct: 121 RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIRRVLKLLPQERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT +DE+ +++ +NP I ++T E ++ V T + K AL+ L Sbjct: 181 SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLV-TIDKSKKTTALI--CL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++F K + L + AIHGN Q +R K L++FK G I+++ Sbjct: 238 IKQQKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI ++ V N D+PN A +Y+HRIGRTGRAG G+A++ V E+++++ Sbjct: 298 VATDIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKD 357 Query: 360 IEKLIEK 366 IE LI+K Sbjct: 358 IETLIQK 364 >gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6] gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O] gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6] gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O] Length = 418 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 232/376 (61%), Gaps = 8/376 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL + + G+ PTPIQ + IP +LQ DV AQTGTGKTA++ LP++ + Sbjct: 5 FIELGLDSSLSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLPLIQM 64 Query: 63 LEK-GRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R + PR LIL PTRELA QV DN ++Y ++ L + + GG Q ++L Sbjct: 65 LSRQSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQEQL 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+LI TPGR+LDH K +N +++LV+DEADRMLDMGF+P IQ I +P RQ Sbjct: 125 AKGVDILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEERQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT ++ ++ ++ P ++V +STA+T++ +K LL L+ Sbjct: 185 TLLFSATFETRVKALAYRLMKEPVEVQVAAANSTADTVKQMVYPV--DKKRKSELLAYLI 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S++ + ++F K+ L L+ G +I+G+ Q +R K L +FK G ++ + Sbjct: 243 GSRN-WQQVLVFTKTKQGSDALVSELKLDGIKAASINGDKSQGARQKALDDFKSGKVRAL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLDI + V NFD+P +AE+Y+HRIGRTGRAG+ G A + +++++ + A Sbjct: 302 IATDVAARGLDIAQLEQVVNFDMPYKAEDYVHRIGRTGRAGQTGLAVSFMSRDEEYLLQA 361 Query: 360 IEKLIEKKV--DWLNG 373 IE L++ ++ +WL G Sbjct: 362 IENLLDTRLPQEWLAG 377 >gi|117920819|ref|YP_870011.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117613151|gb|ABK48605.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 491 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 152/363 (41%), Positives = 222/363 (61%), Gaps = 4/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL +V AV + GY PTPIQ K IP +L +V AQTGTGKTASFVLP+L Sbjct: 1 MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + R + R +IL PTRELA QV +N +Y K LT + GG+ Q K+L Sbjct: 61 HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + + +LV+DEADRMLDMGFI I +I +P RQ Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ ++++ + + IE++ S+ + I+ T KK ALL L+ Sbjct: 181 NLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWL--TTVDKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q Q+ +IF K L LEK+G A H Q R ++L +FK G + + Sbjct: 239 QEQN-WSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI + V N+D+P+ A++YIHRIGRTGRAG G+A + V+K+D +++ A Sbjct: 298 VATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357 Query: 360 IEK 362 IE+ Sbjct: 358 IER 360 >gi|225159079|ref|ZP_03725387.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2] gi|224802337|gb|EEG20601.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2] Length = 451 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 152/372 (40%), Positives = 224/372 (60%), Gaps = 9/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL +V V GYV PTP+Q++ IP+VL D+ AQTGTGKTA+F LP+L Sbjct: 1 MPFSKLGLPSSLVRGVQAMGYVDPTPVQLRAIPVVLAGRDLVASAQTGTGKTAAFALPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L G R PR L+LEPTREL AQV F +G+ ++ ++ GG+ + Q L Sbjct: 61 ARL--GGHRPGGPRVLVLEPTRELGAQVETAFRDFGRFTDVRSTIIHGGVGYGKQRSDLR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D++I T GR++D ++ ++++E+L++DE DRMLDMGFI ++ I L P RQT Sbjct: 119 AGTDIVIATVGRLMDFIKEKEIRLDSVEVLILDEVDRMLDMGFINDVKRIVGLCPKQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQ-YSKKCALLQQL 238 L FSAT+ E++ V+ LQNP+RIE+ + E+++H + T+ Q + CA+L +L Sbjct: 179 LFFSATIPPEIEDVARFALQNPERIEIGRARTVNESVKHAIYPVTFEQKFDLLCAILDKL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ IIF K + L+ + SV +H N Q R++ L FK G ++ Sbjct: 239 -----DYESVIIFSRTKHGADRIARRLKSKKHSVAVLHANRSQNQRVEALEGFKNGRYEV 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARG+D+ V HV N+DVP E+Y+HRIGRTGRA G AF LV ++ + Sbjct: 294 MVATDIAARGIDVAGVSHVINYDVPENPEDYVHRIGRTGRAMAVGDAFMLVTPDEAGDVH 353 Query: 359 AIEKLIEKKVDW 370 I++ I K+ + Sbjct: 354 DIQRFIGAKIPF 365 >gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330] Length = 523 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12J] gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA] gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J] gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA] Length = 627 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 155/388 (39%), Positives = 233/388 (60%), Gaps = 23/388 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++V A+ + Y PTP+Q + IP L D+ +QTG+GKTA+F+LP + Sbjct: 35 FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94 Query: 63 L----EKGRARV---------RMPRT-------LILEPTRELAAQVADNFEKYGKNYNLT 102 + E R R+ R PR L+L PTRELA QV +YG++ Sbjct: 95 ISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 154 Query: 103 V-ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161 V A ++GG+P+ Q L R D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM Sbjct: 155 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 214 Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221 GF I+ I P TRQ L+FSATM +++++E ++ P+RIE+ IE Sbjct: 215 GFSDDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERL 274 Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 T S K LL LL+ ++K I+F K++ +L L + GFS A+HG++ Q Sbjct: 275 HFT-DDMSHKQQLLDHLLRDA-SLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQ 332 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 +R + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR Sbjct: 333 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 392 Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 G A LV D IE+ +++++D Sbjct: 393 SGIAINLVNHNDTFQWRRIERFVDRRID 420 >gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353] gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72] Length = 523 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRV--KENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|260365571|ref|ZP_05778108.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|260877635|ref|ZP_05889990.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|260895944|ref|ZP_05904440.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308085216|gb|EFO34911.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308090909|gb|EFO40604.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|308114339|gb|EFO51879.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] Length = 417 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 161/425 (37%), Positives = 259/425 (60%), Gaps = 24/425 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++FADLG+ ++V + + V PTP+Q K+IP VL+ D+ AQTGTGKTA+F LP++ Sbjct: 3 VNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ + R P LIL PTRELA QV DN +Y ++ +L + + GG Q KLE Sbjct: 63 QAVQQ-KKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+LI TPGR+LDH G + ++ +LV+DEADRMLDMGF P +Q I +P +Q Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT ++ ++ + +P +EV+ ++TAET++ +K LL L+ Sbjct: 182 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++F K+ L L+ G +I+G+ Q +R + L FK+G ++ ++ Sbjct: 240 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++ + AI Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLRAI 358 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 E L+++++ +WL G SL +E+++ P++ G R+K+ SS+K Sbjct: 359 ETLLDQRLPQEWLEGFEPSL---IEEVE-------------PERDGGG--RRKSRSSEKR 400 Query: 419 HIPLK 423 + K Sbjct: 401 KLKAK 405 >gi|28900700|ref|NP_800355.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|28809080|dbj|BAC62188.1| ATP-dependent RNA helicase, DEAD box family [Vibrio parahaemolyticus RIMD 2210633] Length = 421 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 161/425 (37%), Positives = 259/425 (60%), Gaps = 24/425 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++FADLG+ ++V + + V PTP+Q K+IP VL+ D+ AQTGTGKTA+F LP++ Sbjct: 7 VNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ + R P LIL PTRELA QV DN +Y ++ +L + + GG Q KLE Sbjct: 67 QAVQQ-KKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLE 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+LI TPGR+LDH G + ++ +LV+DEADRMLDMGF P +Q I +P +Q Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT ++ ++ + +P +EV+ ++TAET++ +K LL L+ Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++F K+ L L+ G +I+G+ Q +R + L FK+G ++ ++ Sbjct: 244 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++ + AI Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLRAI 362 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 E L+++++ +WL G SL +E+++ P++ G R+K+ SS+K Sbjct: 363 ETLLDQRLPQEWLEGFEPSL---IEEVE-------------PERDGGG--RRKSRSSEKR 404 Query: 419 HIPLK 423 + K Sbjct: 405 KLKAK 409 >gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66] gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66] Length = 523 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRV--KENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|113970505|ref|YP_734298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113885189|gb|ABI39241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 487 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 162/422 (38%), Positives = 244/422 (57%), Gaps = 11/422 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL +V AV + GY PTPIQ K IP +L +V AQTGTGKTASFVLP+L Sbjct: 1 MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + R + R +IL PTRELA QV +N +Y K LT + GG+ Q K+L Sbjct: 61 HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + + +LV+DEADRMLDMGFI I +I +P RQ Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ ++++ + + IE++ S+ + I+ T KK ALL L+ Sbjct: 181 NLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWL--TTVDKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++ +IF K L LEK+G A H Q R ++L +FK G + + Sbjct: 239 Q-ENNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI + V N+D+P+ A++YIHRIGRTGRAG G+A + V+K+D +++ A Sbjct: 298 VATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNP----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 IE+ + + + +++ P P+ +D + A P K T + + YSS Sbjct: 358 IERRLGHVI--VRREIAGFEPKKIVPISILDFVPKS-ASTTERKPHKPTDTSAQPRPYSS 414 Query: 416 QK 417 K Sbjct: 415 GK 416 >gi|71282546|ref|YP_268161.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H] gi|71148286|gb|AAZ28759.1| ATP-dependent RNA helicase, DEAD box family [Colwellia psychrerythraea 34H] Length = 401 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 159/377 (42%), Positives = 231/377 (61%), Gaps = 13/377 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L LS ++ A+ D GY KPT IQ K IP+VL D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLL 60 Query: 61 TIL-----EKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L E G+ R + R LIL PTRELA QV + +Y K +++ + GG+ + Sbjct: 61 EQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQE 120 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q ++L G D+L+ TPGR+LD ++ L + +++LV+DEADRMLDMGFI I I + Sbjct: 121 QKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERL 180 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSATM++E++ +++ + P I + ++ IE V + K AL Sbjct: 181 PEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTV--DKANKSAL 238 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++ +Q+ + +IF K L LEK+G +IH Q R KIL++FK G Sbjct: 239 LSHIITTQN-WQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSG 297 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+ +VA+ +AARGLDI ++ V N+D+P + ++YIHRIGRTGRAG G+A +LV+K++ Sbjct: 298 KIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNF 357 Query: 355 KHIDAIEK----LIEKK 367 + + AIE +IE+K Sbjct: 358 RELCAIESRLGHIIERK 374 >gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785] gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785] Length = 484 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 153/388 (39%), Positives = 240/388 (61%), Gaps = 15/388 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+++ L P+++ A+ +G+ + TPIQ KTIPLVL+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+K ++ +I+EPTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 61 QNLDKQHDSIQ---AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+LDH RG + ++ I+ +V+DEAD MLDMGFI I++I QT Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKIKTIVLDEADEMLDMGFIQDIESILKYASSKHQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ E F+ +P+ +++ TA I+ FV A+ ++K +L +L+ Sbjct: 178 LLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFV--RAKENEKFDILCRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ +IF K+ V L L+ +G++ IHG++ Q RM +L F++G + ++V Sbjct: 236 VQNP-DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ I Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354 Query: 361 EKLIEKKV---------DWLNGDLSSLN 379 E+L KK+ + G LS+ N Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAAN 382 >gi|94263991|ref|ZP_01287792.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93455584|gb|EAT05769.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 509 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 226/371 (60%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P V AV + GY PTPIQ I +L D+ G AQTGTGKTA+F LP+L+ Sbjct: 9 FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ R + P+ L+L PTRELA QVAD + Y ++ V L GG Q + L+R Sbjct: 69 LDTSR---KYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRALQR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++ TPGRI DH RG L ++ + +VIDEAD ML MGF+ ++ I + P RQ Sbjct: 126 GVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQRQVA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT E+ +++ L++P+ I + T ++T ETI + Q +K L ++L++ Sbjct: 186 LFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHY--WLVQGLQKLDALTRILEA 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ +IF K V L L +GF+ A++G++ Q R K + K+GT+ ++VA Sbjct: 244 -EAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A VA +++ + AIE Sbjct: 303 TDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLHAIE 362 Query: 362 KLIEKKVDWLN 372 K +++ L Sbjct: 363 KATRQQISRLQ 373 >gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC 700122] gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC 700122] Length = 721 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 225/370 (60%), Gaps = 4/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS K + AV+D GY +PTP+Q K IP+VL+ D+ A+TGTGKTA+F LP L Sbjct: 26 FNDLGLSEKALSAVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPTLDQ 85 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + RA P +I+ PTRELA Q+AD + N + +L+GG+ + Q KKL G Sbjct: 86 L-RYRADDEGPLMVIVTPTRELAQQIADTCAPIARRTNHSTVVLLGGVGYGPQIKKLRAG 144 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 AD++I TPGR+LD +G + N+E LV+DEADRMLDMGF P + I +P RQTLL Sbjct: 145 ADIIIATPGRLLDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAERQTLL 204 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ KV + L++P+ IE+ A+ I+ + T + K ALL ++ + Sbjct: 205 FSATIDRSQDKVMFSLLKDPEIIEIAHRGDVADLIDQYVIKTDRRL--KPALLNSFVRER 262 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K N L K G + AIH + Q R + L NF+EG ++VA+ Sbjct: 263 GGFRV-IVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVAT 321 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+ +RG+D+P+V +V N+D+P E+Y+HRIGRTGRAG G A + V + + +I+K Sbjct: 322 DVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKSIQK 381 Query: 363 LIEKKVDWLN 372 I++ ++ L+ Sbjct: 382 FIDQTIEVLD 391 >gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW] gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW] Length = 528 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 228/371 (61%), Gaps = 4/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DLGL P ++ AV + G+ PTPIQ + +P L DV A TGTGKTA+FVLP L Sbjct: 8 VSFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSL 67 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 I RA PR L+L PTRELA+QV ++ K + ++GG+P+ Q + Sbjct: 68 QRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEM 127 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L R D+++ TPGR++DH RG+L ++ +E+LV+DEADRMLDMGF ++ I + P R Sbjct: 128 LRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAER 187 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLF+AT+ +++++ ++P RI+V + +E ++ K LL+ L Sbjct: 188 QTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADG-LEHKHRLLETL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ K GI+F K + L +L ++G +HG++ QR R +++ ++G I + Sbjct: 247 LGGEEFGK-GIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI D+ HV NFD+P +AE+Y+HRIGRTGRAG G +++L + + + + Sbjct: 306 IVATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVR 365 Query: 359 AIEKLIEKKVD 369 AIE K D Sbjct: 366 AIEAYTNKAAD 376 >gi|36787780|emb|CAE16895.1| inducible ATP-independent RNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 644 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 151/383 (39%), Positives = 240/383 (62%), Gaps = 14/383 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 12 ISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 + A ++ P+ L+L PTRELA QVA+ +F K+ +N N V L GG ++ Q + Sbjct: 72 HNIN---AELKAPQILVLAPTRELAVQVAEACADFSKHMRNVN--VVALYGGQRYDVQLR 126 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI S +P Sbjct: 127 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAE 186 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT LFSATM + +++++ F+ +P+ + + +T I + + Y +K L + Sbjct: 187 HQTALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGM--RKNEALVR 244 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+++D IIF K + + +LE+ G++ A++G+++Q R + L K+G + Sbjct: 245 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 303 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---I 354 +++A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + Sbjct: 304 ILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLL 363 Query: 355 KHIDAIEKLIEKKVDWLNGDLSS 377 ++++ KL +V+ N +L S Sbjct: 364 RNVERTMKLTIPEVELPNAELLS 386 >gi|153839935|ref|ZP_01992602.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|260901625|ref|ZP_05910020.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|149746542|gb|EDM57530.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|308108886|gb|EFO46426.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|328470634|gb|EGF41545.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329] Length = 417 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 161/425 (37%), Positives = 259/425 (60%), Gaps = 24/425 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++FADLG+ ++V + + V PTP+Q K+IP VL+ D+ AQTGTGKTA+F LP++ Sbjct: 3 VNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ + R P LIL PTRELA QV DN +Y ++ +L + + GG Q KLE Sbjct: 63 QAVQQ-KKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+LI TPGR+LDH G + ++ +LV+DEADRMLDMGF P +Q I +P +Q Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT ++ ++ + +P +EV+ ++TAET++ +K LL L+ Sbjct: 182 MLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++F K+ L L+ G +I+G+ Q +R + L FK+G ++ ++ Sbjct: 240 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++ + AI Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSQDEEYLLRAI 358 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 E L+++++ +WL G SL +E+++ P++ G R+K+ SS+K Sbjct: 359 ETLLDQRLPQEWLEGFEPSL---IEEVE-------------PERDGGG--RRKSRSSEKR 400 Query: 419 HIPLK 423 + K Sbjct: 401 KLKAK 405 >gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12] gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12] Length = 503 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 154/384 (40%), Positives = 236/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LSP+++ +V AG+ + TPIQ +TIPL L DV G AQTGTGKTA+F LPML Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R ++ L++ PTRELA Q + + G++ + V + GG Q + L+ Sbjct: 61 EKIDPDRHELQ---GLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIRGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH NR L + ++ LV+DEAD ML+MGF+ I+ I VP RQT Sbjct: 118 DRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIIFQVPDQRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + F+++P +++ TA+ I+ +V A+ +K ++ +L Sbjct: 178 LLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVR--AKEYEKFDIMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 236 VQ-TPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L +K+ +++L PP EK Sbjct: 355 ENLTKKR-------MTTLRPPTEK 371 >gi|146292298|ref|YP_001182722.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|145563988|gb|ABP74923.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] gi|319425598|gb|ADV53672.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 433 Score = 293 bits (750), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 231/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F SP+++ A+ D GY + TPIQ + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++EK ++ R LIL PTRELAAQVADN Y K N +V + GG+ E Q +K Sbjct: 61 QKMVEKPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGADV++ TPGR+L+H + ++N++ LV+DEADRMLDMGF IQ I V R Sbjct: 121 LKRGADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++K++ + + P+ I V+ ++TA+T+ V + +K LL +L Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F ++ L L G +HG Q SR + L F G +++ Sbjct: 239 I-GKKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIP + +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +K+ Sbjct: 358 DIEKLIGQKI 367 >gi|161579561|ref|NP_931687.2| ATP-dependent RNA helicase DeaD [Photorhabdus luminescens subsp. laumondii TTO1] Length = 639 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 151/383 (39%), Positives = 240/383 (62%), Gaps = 14/383 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 7 ISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 + A ++ P+ L+L PTRELA QVA+ +F K+ +N N V L GG ++ Q + Sbjct: 67 HNIN---AELKAPQILVLAPTRELAVQVAEACADFSKHMRNVN--VVALYGGQRYDVQLR 121 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI S +P Sbjct: 122 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAE 181 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT LFSATM + +++++ F+ +P+ + + +T I + + Y +K L + Sbjct: 182 HQTALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGM--RKNEALVR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+++D IIF K + + +LE+ G++ A++G+++Q R + L K+G + Sbjct: 240 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---I 354 +++A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + Sbjct: 299 ILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLL 358 Query: 355 KHIDAIEKLIEKKVDWLNGDLSS 377 ++++ KL +V+ N +L S Sbjct: 359 RNVERTMKLTIPEVELPNAELLS 381 >gi|238897556|ref|YP_002923235.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465313|gb|ACQ67087.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 598 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 234/371 (63%), Gaps = 11/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGLSP ++ A+ D GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 7 ISFSKLGLSPSILSALTDLGYEKPSPIQLECIPHLLNGSDVLGMAQTGSGKTAAFGLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + ++ P+ L+L PTRELA QVA NF KY K N V L GG P+ Q K Sbjct: 67 ---QNIKPDIKAPQILVLAPTRELAVQVAQALTNFSKYMKGIN--VLALYGGQPYHVQLK 121 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G +++ TPGR+LDH RG L ++++ LV+DEAD ML MGFI ++NI + +P Sbjct: 122 ALRQGPQIVVGTPGRLLDHLKRGTLNLSSLTGLVLDEADEMLRMGFIEDVENILAKIPAE 181 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT LFSATM D +++++ F++ PK + +++ +T I + + +K L + Sbjct: 182 HQTALFSATMPDAIRRITRRFMKEPKEVRIHSNVTTKPDINQSYWPVFGM--RKNQALVR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ +D IIF K + + +LE G++ A++G+++Q R + L K+G + Sbjct: 240 FLEVED-FDAAIIFVRTKNATLEVAEALEDSGYNSAALNGDMNQSLREQTLERLKDGRLD 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + Sbjct: 299 ILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 358 Query: 358 DAIEKLIEKKV 368 IE++I++ + Sbjct: 359 KNIERVIKQPI 369 >gi|150002994|ref|YP_001297738.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482] gi|149931418|gb|ABR38116.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482] Length = 434 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 166/428 (38%), Positives = 254/428 (59%), Gaps = 17/428 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ + IP++L+ D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + + LIL PTRELA Q+ +NF++Y + A++ GG+P +AQ L+ Sbjct: 61 QRLYQSDHKKGI-KALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG VLI TPGR+LD ++G + + +E V+DEADRMLDMGFI I+ + L+P RQT Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++++ L NP++IEV SST +TI + Y K+ L L Sbjct: 180 LFFSATMPSEIEKLADSMLTNPEKIEVTPVSSTVDTIRQ---SVYFVEKKEKKDLLLHLL 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ +IF K L L K AIHGN Q +R + L+NFK+ T ++++ Sbjct: 237 KNPEIESVLIFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN +E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356 Query: 361 EKLIEKKV------DWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKK 411 +KLI ++ W+ G+ + E + A+ N + + KS G + RRKK Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGEKAQAGKTEELKEKAKANKVYRGS----KSNGDYWRRKK 412 Query: 412 NYSSQKSH 419 S++ Sbjct: 413 QAQSKQGQ 420 >gi|120599766|ref|YP_964340.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|120559859|gb|ABM25786.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] Length = 433 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 232/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F SP+++ A+ D GY + TPIQ + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++EK ++ R LIL PTRELAAQVADN Y K N +V + GG+ E Q +K Sbjct: 61 QKMVEKPSETLKSNTRVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGADV++ TPGR+L+H + ++N++ LV+DEADRMLDMGF IQ I V R Sbjct: 121 LKRGADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++K++ + + P+ I V+ ++TA+T+ V + +K LL +L Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ + ++F ++ L L G +HG Q SR + L F G +++ Sbjct: 239 IGKKN-WQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIP + +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +K+ Sbjct: 358 DIEKLIGQKI 367 >gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA] gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA] Length = 523 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 234/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS] gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS] Length = 414 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 227/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LG+ + A+ + GY PTPIQ + IP++L+ +D+ AQTGTGKTA+F LP+L Sbjct: 1 MPFSALGIIDHLRKALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVL 60 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + R R R L+L PTRELA Q+ ++F YG++ L ++ GG+ Q + Sbjct: 61 QRLHQSRMHGEKRKIRCLVLTPTRELAIQIGESFTAYGRHTGLINTVIFGGVNQNPQTAR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD +G L + +IE V+DEADRMLDMGFI I+ + +++P R Sbjct: 121 LVRGVDILVATPGRLLDLIGQGHLHLRDIEYFVLDEADRMLDMGFIHDIRRVLAVLPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM E+ K+S L NPK + V SST E I + + K +LL L Sbjct: 181 QSLFFSATMPPEIIKLSAAILHNPKEVMVTPVSSTVEIINQQIL--FVDRENKNSLLAHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++ +++ ++F K + L + AIHGN Q +R + L NFK ++ Sbjct: 239 LKERN-IESALVFTRTKHGADKVARFLAHHDITAEAIHGNKSQNARQRALGNFKTRQTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ +V N D+PN E Y+HRIGRTGRAG G A++ E+ ++ Sbjct: 298 LVATDIAARGIDIDELEYVINIDLPNIPETYVHRIGRTGRAGNRGAAYSFCNAEEKAYLR 357 Query: 359 AIEKLIEKKV 368 IEKLI +K+ Sbjct: 358 DIEKLIARKI 367 >gi|54293256|ref|YP_125671.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens] gi|53753088|emb|CAH14535.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens] Length = 414 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 161/372 (43%), Positives = 228/372 (61%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L + AV + GY PT IQ+K IPL+L HD+ G AQTGTGKTASFVLP+L Sbjct: 1 MSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + G+ P + LIL PTRELA QV ++ +YGK L A++ GG+ Q K Sbjct: 61 Q--KAGQQTPASPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIK 118 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L+ G ++L+ TPGR+LD + + + + I+ LV+DEADRMLDMGFI I+ I L+P Sbjct: 119 QLDSGLEILVATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLK 178 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT T E++ ++ N L I++ ++ +TI+ + + K ALL Sbjct: 179 RQNLLFSATFTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSV--DRNHKLALLSH 236 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ ++F K L L + AIHGN Q R K L++FK G +Q Sbjct: 237 LLH-KNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQ 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++A+D+AARG+DI + V NFD+P+ E+Y+HRIGRTGRAG G A +LV+ E+IK + Sbjct: 296 TLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLL 355 Query: 358 DAIEKLIEKKVD 369 +IEKLI +K++ Sbjct: 356 LSIEKLINQKLE 367 >gi|253991496|ref|YP_003042852.1| ATP-dependent RNA helicase DeaD [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638374|emb|CAR66996.1| cold-shock dead box protein a (ec 3.6.1.-) (atp-dependent rna helicas dead) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782946|emb|CAQ86111.1| cold-shock dead box protein A [Photorhabdus asymbiotica] Length = 635 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 151/383 (39%), Positives = 240/383 (62%), Gaps = 14/383 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 12 ISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 + A ++ P+ L+L PTRELA QVA+ +F K+ +N N V L GG ++ Q + Sbjct: 72 HNIN---AELKAPQILVLAPTRELAVQVAEACADFSKHMRNVN--VVALYGGQRYDVQLR 126 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI S +P Sbjct: 127 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAE 186 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT LFSATM + +++++ F+ +P+ + + +T I + + Y +K L + Sbjct: 187 HQTALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGM--RKNEALVR 244 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+++D IIF K + + +LE+ G++ A++G+++Q R + L K+G + Sbjct: 245 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 303 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---I 354 +++A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + Sbjct: 304 ILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLL 363 Query: 355 KHIDAIEKLIEKKVDWLNGDLSS 377 ++++ KL +V+ N +L S Sbjct: 364 RNVERTMKLTIPEVELPNAELLS 386 >gi|224368898|ref|YP_002603060.1| RhlE1 [Desulfobacterium autotrophicum HRM2] gi|223691615|gb|ACN14898.1| RhlE1 [Desulfobacterium autotrophicum HRM2] Length = 427 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 157/366 (42%), Positives = 228/366 (62%), Gaps = 4/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V AV GY P+PIQ++ IP VL+ DV AQTGTGKT F LP+L Sbjct: 20 MTFSTLGLSAPIVKAVAGQGYETPSPIQVRAIPAVLKGRDVMAAAQTGTGKTLVFTLPVL 79 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L K + R L+L PTRELA Q+ ++ +G++ +L + GG+ Q KL Sbjct: 80 ERLSKLAPVQANQVRALVLVPTRELAVQIGESVTTFGRHLHLRSTAVFGGVKINPQMMKL 139 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR+LD ++ + + +E+LV+DEADRML+MGFI I I +L+P RQ Sbjct: 140 RGGVDVLVATPGRLLDLHSKNAVKFDRLEVLVLDEADRMLNMGFIHDIGKIIALLPNQRQ 199 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT DE++ ++ L +P I V P+S + I+ +V Q +KK ALL +L+ Sbjct: 200 TLMFSATFPDEIRDLARGLLHDPVEISVAPPNSVLKIIKQ-WVYPVDQ-NKKSALLSKLI 257 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K L LEK+G AIHG+ Q +R K L NFK+GT++++ Sbjct: 258 -CDNQWEQVLVFSKTKNGADRLVRHLEKEGIDAAAIHGDKSQGARTKALENFKKGTVRIL 316 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NFD+P+ E+Y+H +GRTGRAG G+ +LV ++ + + Sbjct: 317 VATDIAARGLDIYQLPQVVNFDLPHVKEDYVHLMGRTGRAGAPGQVISLVCADEFQQLSD 376 Query: 360 IEKLIE 365 IE+LI+ Sbjct: 377 IERLIK 382 >gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T] gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T] Length = 441 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 153/371 (41%), Positives = 225/371 (60%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +LGL+ +++ AV GY PTP+Q + IP + D+ + TG+GKTA+F LP L Sbjct: 1 MNFENLGLAEELLKAVASTGYTTPTPVQQRAIPAAIAGRDLLVSSHTGSGKTAAFTLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 I+++ A PR L+L PTRELA QV + YGK L A L+GG P AQ K+ Sbjct: 61 NRIIDRRPAPGSGPRVLVLTPTRELAQQVEKAVQTYGKALRWLNTACLVGGAPMFAQIKQ 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+R DV++ TPGR+LDH R K+ ++++E+L++DEADRMLDMGF I I + P R Sbjct: 121 LQRQCDVVVATPGRLLDHLTRRKIKLSDVEVLILDEADRMLDMGFAEDIDAIVAATPAKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQQ 237 QTLLFSAT+ + ++ ++ +RIE+ IE + +A K LL Sbjct: 181 QTLLFSATLDGVVGSMATRMTRDAERIEIEVAQEDRGQIEQRLM--FADDLGHKSRLLHA 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL +D M ++F K++ L +L+++G S A+HG++ Q R + L ++G I Sbjct: 239 LL-GEDGMNQAVVFTATKRSADELSLALQEKGISAAALHGDMHQTQRNRTLDRLRQGRIG 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ + HV NFD P +AE+Y+HRIGRTGRAGR G A TL + I Sbjct: 298 VLVATDVAARGIDVAGISHVINFDPPRQAEDYVHRIGRTGRAGRDGIAITLSGPRETGLI 357 Query: 358 DAIEKLIEKKV 368 AIE+ ++ Sbjct: 358 RAIERFTGDRL 368 >gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides BS1] Length = 591 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 228/371 (61%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS +V+ A+ GY PTP+Q++TIP++L+ DV G AQTGTGKTA+F LP+L+ Sbjct: 14 FKDLGLSGQVLDALEKVGYETPTPVQLQTIPIILKGSDVLGQAQTGTGKTAAFALPLLST 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ A P+ L+L PTRELA QVA+ F++Y + V + GG + Q ++L R Sbjct: 74 IDLSNAS---PQVLVLTPTRELALQVAEAFQRYAACMEDFHVLPIYGGQDYSGQLRRLRR 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH R L ++ ++ LV+DEAD ML MGF+ ++ I P TRQ Sbjct: 131 GVHVVVGTPGRVMDHIRRQTLNLDGLKTLVLDEADEMLRMGFVDDVEWILEKTPATRQVA 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E+++++ +L++ + + + SST E+ F+ + K L ++L+ Sbjct: 191 LFSATMPSEIRRITRKYLRDFTEVAIKSKSSTVESTTQRFLPVSGHH--KLDALTRILEI 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIF K V L L +G++ A++G++ Q R K + FK+ +++A Sbjct: 249 EH-YDGVIIFVRTKTQTVELSEKLRARGYASAALNGDMMQNHREKTVGQFKKSVYNILIA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V ++ + IE Sbjct: 308 TDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVTPREMSMLRTIE 367 Query: 362 KLIEKKVDWLN 372 + I K++D + Sbjct: 368 RAIRKRIDRME 378 >gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus J-10-fl] gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl] Length = 552 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 226/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V + GY +PTPIQ + IPL+L DV AQTGTGKTA+F LPM+ Sbjct: 4 FAELGLSDALVSTLSGLGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPMIER 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + + L+L PTRELA QVA+ +YG++ +L V + GG P E Q + L +G Sbjct: 64 VTDAL----VVQALVLAPTRELAVQVAEAIHRYGRHRSLRVLPIYGGQPIERQLRGLAQG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L +++ ++V+DEAD MLDMGF ++ I L P RQT L Sbjct: 120 TQVVVGTPGRVLDHLKRGSLRFDHLRMVVLDEADEMLDMGFAEELEAILQLTPTERQTAL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +Q ++ + + P R+ + T I + A+ K L ++L + Sbjct: 180 FSATLPPAVQNLTLRYTRQPVRVSIAAEQLTTPRIRQTYYEVLAR--DKLDALCRVLDA- 236 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+FC ++ ++ L+ +G++ ++HG++ Q +R +++ F+EG + ++VA+ Sbjct: 237 EMPQLAIVFCRTRQEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVLVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI +V HV N+DVP E+Y+HRIGRTGRAGR G A T + + + + IE+ Sbjct: 297 DVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGREGVAITFITPRERRMLQIIER 356 Query: 363 LIEKKVD 369 + +++ Sbjct: 357 VTRTRIE 363 >gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS] gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS] Length = 441 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 219/366 (59%), Gaps = 7/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + L P ++ A+ GY PT +Q + IP VL D+ A TGTGKTA+FVLP L Sbjct: 1 MSFEEFNLHPIILKAIQQCGYTTPTGVQAEAIPKVLNGSDLIASANTGTGKTAAFVLPAL 60 Query: 61 TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L RV+ P L+L PTRELA Q++ YGKN L+GG+P+E Q Sbjct: 61 QRLTNKEHRVKKQNGKPSVLVLTPTRELANQISQAIRNYGKNLRFFSTNLVGGMPYEPQL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L R D+++ TPGR+LD R + ++ + +LV+DEADRMLDMGF+ + I S P Sbjct: 121 RALSRPIDIVVATPGRLLDLVERRNIDLSGVNMLVLDEADRMLDMGFVDEVNKIASFTPE 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 TRQTLLFSAT + + ++ L++P+RI+V + + + +A + K LL Sbjct: 181 TRQTLLFSATWDNTMASLARRLLKDPERIQVESQVTQNNIEQRLHIAD--DFKHKNRLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L +++ + IIF K+ +L L+ QG S A+HG++ Q +R + L N + G + Sbjct: 239 HVLDNEE-LTQAIIFSATKQGANDLAQELKAQGHSAAALHGDMKQGARNRTLMNLRRGKL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +L+VA+D+AARG+D+ V HV NFD+P AE+Y+HRIGRTGRAG G A + +D +H Sbjct: 298 RLLVATDVAARGIDVTTVTHVINFDLPRFAEDYVHRIGRTGRAGAAGTAISFALPDDARH 357 Query: 357 IDAIEK 362 + IE+ Sbjct: 358 LARIER 363 >gi|238760236|ref|ZP_04621381.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236] gi|238701559|gb|EEP94131.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236] Length = 660 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 145/364 (39%), Positives = 233/364 (64%), Gaps = 6/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA + K+ + + V L GG ++ Q + L + Sbjct: 69 IDP---TLKAPQVLVLAPTRELAIQVAQALTDFSKHMSGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I F Y+KK AL+ + L+S Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALV-RFLES 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + +E Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNVE 363 Query: 362 KLIE 365 + ++ Sbjct: 364 RTMK 367 >gi|293393148|ref|ZP_06637463.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582] gi|291424294|gb|EFE97508.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582] Length = 642 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 149/377 (39%), Positives = 237/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L+ A ++ P+ L+L PTRELA QVA+ + K+ N + V L GG ++ Q + L + Sbjct: 69 LD---ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 126 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + AQ +K L + L++ Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWT--AQGMRKNEALVRFLEA 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 362 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 363 RTMKLTIPEVELPNAEL 379 >gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp. YIT 12067] gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp. YIT 12067] Length = 529 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 224/368 (60%), Gaps = 13/368 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L K+V A+ D G+ +P+PIQ TIPLVL+ +DV G AQTGTGKTA+F +P++ Sbjct: 8 FGSLELDKKIVTALTDMGFEEPSPIQAATIPLVLEGNDVIGQAQTGTGKTAAFGIPLVQA 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + + LI+ PTRELA QVA+ K G+ + + GG P E Q + L Sbjct: 68 ITD----FKHIQALIMTPTRELAIQVAEEVGKIGRTRRVRALPVYGGQPIERQIRALRNN 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR++DH NRG + +++I+ LV+DEAD MLDMGF+ I+ I +P RQTLL Sbjct: 124 VQIVIGTPGRLIDHINRGTIRLDHIKFLVLDEADEMLDMGFVDDIEEIMRSLPVERQTLL 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + +++ +++ PK + ++ T IE + T + C LL Sbjct: 184 FSATMPRPILSLTKKYMKAPKNVTISKEELTVPLIEQYYFETKDKIEGLCRLL------- 236 Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D +G IIFC KK V +L +L +G+ +HG++ Q R +++ F+EG + +++ Sbjct: 237 DAEIDGKLIIFCRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV NFD+P E+Y+HRIGRTGRAG G A T + + + + I Sbjct: 297 ATDVAARGIDVDNITHVINFDIPQDPESYVHRIGRTGRAGNTGVAMTFITPREFRQLKLI 356 Query: 361 EKLIEKKV 368 E+ ++ K+ Sbjct: 357 ERTVKTKI 364 >gi|261820134|ref|YP_003258240.1| ATP-dependent RNA helicase DeaD [Pectobacterium wasabiae WPP163] gi|261604147|gb|ACX86633.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae WPP163] Length = 632 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 147/377 (38%), Positives = 238/377 (63%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L + ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L Sbjct: 68 L---KPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLRALRG 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P T QT Sbjct: 125 GAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+++P+ + + + +T I + Q +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTV--QGMRKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++++ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621] gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621] Length = 519 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 156/364 (42%), Positives = 228/364 (62%), Gaps = 8/364 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L ++ + V+ +++ Sbjct: 2 GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQ---GIVIA 58 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QV + K GK+ + + + GG Q + L++ +++ TPGRILDH NR Sbjct: 59 PTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR 118 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLLFSATM D +++++E F+ Sbjct: 119 KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM 178 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 P+ I+V T I+ ++ Q KK +L +LL Q + + IIF K+ V Sbjct: 179 TEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ-SPELAIIFGRTKRRVD 235 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 L +L +G++ IHG++ Q RM +L FKEGTI+++VA+D+AARGLDI V HV+N Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYN 295 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379 FD+P E+Y+HRIGRTGRAG+ G A V + + IE+ ++KVD + D +L+ Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRM--DAPTLD 353 Query: 380 PPLE 383 LE Sbjct: 354 EALE 357 >gi|300772029|ref|ZP_07081899.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC 33861] gi|300760332|gb|EFK57158.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC 33861] Length = 450 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 5/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D + +++ A+ +AGY PT IQ K I VL D+ GIAQTGTGKTA+FVLPML Sbjct: 5 FEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPMLMK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ + + R LIL PTRELA Q+ ++ + + K +L +L GG+ + Q + LE+G Sbjct: 65 LKYAQGKDM--RALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENLEKG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR LD + G + + +++ LV+DEAD+M+DMGFI I I +VP RQ LL Sbjct: 123 VDIIVATPGRFLDLYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRKRQNLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM++ ++K++ +FL P IEV ++ A+T++ Q + K LLQ LL+ Sbjct: 183 FSATMSELVRKIAGDFLAFPTVIEVTEQATPAKTVQQAVYKVPNQKT-KLNLLQHLLKDD 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS--VCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+FC K N+ H LE++ + V IH N Q +R+ ++ FKEG I+++V Sbjct: 242 ESFHRLIVFCKTKTVADNVFHFLERKYGTEQVRVIHANKGQNTRINSINAFKEGNIRILV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ +V HV NF+VP E+Y+HRIGRTGRA G A T + ++ I Sbjct: 302 ATDVAARGLDVSNVSHVINFEVPIVIEDYVHRIGRTGRAFNEGDAITFSNPAEDYYVRKI 361 Query: 361 EKLIEKKVDWL 371 EKLI + + L Sbjct: 362 EKLIRQSIPVL 372 >gi|149907510|ref|ZP_01896257.1| Helicase [Moritella sp. PE36] gi|149809180|gb|EDM69109.1| Helicase [Moritella sp. PE36] Length = 615 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 151/374 (40%), Positives = 231/374 (61%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL L ++ + D GY PTPIQ + IPL+ DV G+AQTGTGKTA+F LP+L Sbjct: 8 VQFTDLNLPEPILQVLNDLGYEAPTPIQAECIPLLQNGGDVLGMAQTGTGKTAAFALPLL 67 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ + P+ L+L PTRELA QVA+ F+ Y ++ V + GG + Q K L Sbjct: 68 SNIDTALTK---PQILVLAPTRELAIQVAEAFQTYSRHMRGFHVLPIYGGQSYPIQLKAL 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +R V++ TPGR++DH NRG L ++ I+ LV+DEAD ML MGFI +++I S P RQ Sbjct: 125 KRNPQVIVGTPGRVIDHINRGTLDLSGIKALVLDEADEMLRMGFIDDVESILSKTPAERQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238 LFSATM +E++++++ F+ NP +++ +ST E IE C + Q K L ++ Sbjct: 185 MALFSATMPEEIRRITKRFMTNPTSVKIANKTSTVENIEQKCLIIGGLQ--AKLDGLTRI 242 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+++D IIF K V L LE +G+S A++G+++Q R + +S K G + + Sbjct: 243 LETED-YDGVIIFARTKTMTVELAEKLEARGYSAAALNGDLNQAMRERTVSRLKSGQLDI 301 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARGLD+P + V N+D+P E+Y+HRIGRTGRAGR G A A + + + Sbjct: 302 VIATDVAARGLDVPRIDLVINYDIPTDTESYVHRIGRTGRAGRKGTAILFAAPRERRLLK 361 Query: 359 AIEKLIEKKVDWLN 372 AIE+ + + ++ Sbjct: 362 AIERATRQPLTMMD 375 >gi|226943654|ref|YP_002798727.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii DJ] gi|226718581|gb|ACO77752.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Azotobacter vinelandii DJ] Length = 558 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 149/367 (40%), Positives = 235/367 (64%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ P V+ A+ GY +P+PIQ + IP++L HD+ G AQTGTGKTA+F LPML+ Sbjct: 8 FAALGIHPAVLAAITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAFALPMLSR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R R P+ LIL PTRELA QVA FE Y + V + GG P Q K L + Sbjct: 68 IDPAR---REPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGR+ DH R + L++ ++ LV+DEAD ML +GF+ ++ I + +P +RQT+ Sbjct: 125 GAQILVATPGRLCDHLRRDEQLLSTVKHLVLDEADEMLKLGFMEDLEVIFAALPESRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ +++++E L P+ +++ + T I+ + +A +K A + +LL+ Sbjct: 185 LFSATLPHSIREIAEKHLHEPQHVKIAAKTQTVARIDQAHLMVHA--DQKTAAVLRLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ I F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 EE-FDALIAFVRTKQATLDLAGALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV + + + IE Sbjct: 302 TDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361 Query: 362 KLIEKKV 368 ++ +KV Sbjct: 362 RVTGQKV 368 >gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida U112] gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella tularensis subsp. novicida FTE] gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112] gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis subsp. novicida FTE] Length = 441 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 233/365 (63%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DL L+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLDLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+PN AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLI 364 IE LI Sbjct: 358 IEHLI 362 >gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis WY96-3418] Length = 441 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I +L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLI 364 IE LI Sbjct: 358 IEHLI 362 >gi|294140728|ref|YP_003556706.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea DSS12] gi|293327197|dbj|BAJ01928.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea DSS12] Length = 448 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 231/373 (61%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ ++ + GY PTPIQ + IPL L+ ++ AQTG+GKTA+FVLPML Sbjct: 1 MSFSNLGLSDPILTSLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPML 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G R + R LIL PTRELA QV + E YGK NL + GG+ + Q + L Sbjct: 61 EMLARGENQRKKRIRALILTPTRELAVQVCTSIEAYGKYLNLKALAVYGGVDYGPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR+ D + + + + IE+LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGIDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ + N ++ V S I+ V KK ALL L+ Sbjct: 181 NLLFSATLSRQVRELAKETIPNAIQLSVTKKSEGKPNIDQWLVTV--DKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +++ +IF K L LEK+G IH Q R +IL++FK G I+ + Sbjct: 239 K-ENSWPQALIFIETKHGAAKLVAQLEKRGIEADCIHSGRAQAIREQILADFKTGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++ ++ARG+DI D+ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 ISTGISARGIDIDDLPLVINYDLPYPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE+ LIE+KV Sbjct: 358 IERRLDLLIERKV 370 >gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956] gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956] Length = 492 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 236/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS K++ A+ +GY + TPIQ +TIP+VL DV G AQTGTGKTA+F LP + Sbjct: 1 MYFSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ TLI+ PTRELA Q + + GK + V ++ GG Q + LE Sbjct: 61 EHVDVENPAIQ---TLIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLE 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+ DH RG + ++ ++ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 118 KNPQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++ F+ +P+ +++ T + ++ +V A+ +K ++ +++ Sbjct: 178 LLFSATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVR--AKDYEKFDIMTRMID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F K+ V L L +G++ IHG++ Q R KI+ FKEG + ++V Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P+ ++Y+HRIGRTGRAG HG + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 EKL + + L PP E+ Sbjct: 355 EKLTRAR-------MLPLKPPTEE 371 >gi|238755161|ref|ZP_04616507.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473] gi|238706608|gb|EEP98979.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473] Length = 656 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 233/364 (64%), Gaps = 6/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 69 IDPT---LKAPQVLVLAPTRELAVQVAEALSSFSKHISGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+++P+ + + + ++T I + Y K AL+ + L+S Sbjct: 186 LFSATMPEAIRRITRRFMKDPQEVRIQSSNTTRPDISQSYWKVGGGYRKNEALV-RFLES 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L ++G + +++A Sbjct: 245 ED-FDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQSLREQTLERLRDGRLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIE 363 Query: 362 KLIE 365 + ++ Sbjct: 364 RTMK 367 >gi|281490897|ref|YP_003352877.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis KF147] gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus lactis subsp. lactis KF147] Length = 547 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 151/381 (39%), Positives = 236/381 (61%), Gaps = 13/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS +V + + GY +PTPIQ +TI L L+ DV G AQTGTGKTA+F LP + Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ L++ PTRELA Q + ++GK+ L V + GG E Q K L+ Sbjct: 61 EKIDASNPAIQ---ALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR++D R + ++ +E L++DEAD ML+MGF+ I I P RQT Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEARQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++K+ F++NP+ I++ TA+ I+ FV T + +K +L +LL Sbjct: 178 LLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKT--KEFEKFDVLTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +G+ +HG++DQ R+ +L +FK G I ++V Sbjct: 236 VERP-ELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ AI Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 E + +K + L PP Sbjct: 355 ENMTKKP-------MKGLKPP 368 >gi|254883642|ref|ZP_05256352.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA] gi|294775629|ref|ZP_06741138.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510] gi|254836435|gb|EET16744.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA] gi|294450571|gb|EFG19062.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510] Length = 434 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 166/428 (38%), Positives = 254/428 (59%), Gaps = 17/428 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ + IP++L+ D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + + LIL PTRELA Q+ +NF++Y + A++ GG+P +AQ L+ Sbjct: 61 QRLYQSDHK-KGIKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG VLI TPGR+LD ++G + + +E V+DEADRMLDMGFI I+ + L+P RQT Sbjct: 120 RGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++++ L NP++IEV SST +TI + Y K+ L L Sbjct: 180 LFFSATMPSEIEKLADSMLTNPEKIEVTPVSSTVDTIRQ---SVYFVEKKEKKDLLLHLL 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ +IF K L L K AIHGN Q +R + L+NFK+ T ++++ Sbjct: 237 KNPEIESVLIFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+++PN +E Y+HRIGRTGRAG G A + E++ ++ I Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356 Query: 361 EKLIEKKV------DWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKK 411 +KLI ++ W+ G+ + E + A+ N + + KS G + RRKK Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGEKAQAGKTEELKEKAKANKVYRGS----KSNGDYWRRKK 412 Query: 412 NYSSQKSH 419 S++ Sbjct: 413 QAQSRQGQ 420 >gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii ATCC 33200] gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii ATCC 33200] Length = 484 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 152/388 (39%), Positives = 240/388 (61%), Gaps = 15/388 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+++ L P+++ A+ +G+ + TPIQ KTIPLVL+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+K ++ +I+EPTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 61 QNLDKQHDSIQ---AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+LDH RG + ++ ++ +V+DEAD MLDMGFI I++I QT Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ E F+ +P+ +++ TA I+ FV A+ ++K +L +L+ Sbjct: 178 LLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFV--RAKENEKFDILCRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ +IF K+ V L L+ +G++ IHG++ Q RM +L F++G + ++V Sbjct: 236 VQNP-DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ I Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354 Query: 361 EKLIEKKV---------DWLNGDLSSLN 379 E+L KK+ + G LS+ N Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAAN 382 >gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B] gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B] Length = 598 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 153/372 (41%), Positives = 230/372 (61%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L ++ A+ D GY P+ IQ TIP +L HD+ G AQTGTGKTA+F LP+L Sbjct: 10 FDELRLPDFLLKALADVGYESPSAIQSMTIPPLLDGHDLVGQAQTGTGKTAAFALPVLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ + P+ L+L PTRELA QVA+ F+KY + + V + GG + Q ++L+R Sbjct: 70 LD---TKAGGPQALVLTPTRELAIQVAEAFQKYARYSKGFKVVPIYGGSDYRTQLRQLQR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH RG L +++++ LV+DEAD ML MGFI ++ I P TRQ Sbjct: 127 GVHIIVGTPGRVMDHMRRGSLDLSSLKTLVLDEADEMLRMGFIDDVEWILEQTPATRQIA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240 LFSATM D ++++++ LQ+P+ I + + T +I + ++ Q K L ++L+ Sbjct: 187 LFSATMPDAIRRIAKTHLQSPQEITIKRKTVTNASIRQRVWIMAGVQ---KLDALTRILE 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D IIF + L L +GF+ A++G+I Q R K + +FK G + L+V Sbjct: 244 TED-YDGVIIFVRTRIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLV 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV N+D+PN E YIHRIGRTGRAGR G+A AK + + + AI Sbjct: 303 ATDVAARGLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAGRTGEAILFAAKRERRLLHAI 362 Query: 361 EKLIEKKVDWLN 372 E+ +K+D + Sbjct: 363 ERTTGQKIDQMT 374 >gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium smegmatis str. MC2 155] gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium smegmatis str. MC2 155] Length = 581 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P V+ AV D GY P+ IQ TIP +L DV G+AQTGTGKTA+F +P+L+ Sbjct: 23 FADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPILSK 82 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R R + L+L PTRELA QVA+ F +YG + + V + GG + Q L R Sbjct: 83 IDTSR---RDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLRR 139 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGF ++ I + P +Q Sbjct: 140 GAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVA 199 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++ +L +P + V ++TAE I F+ +K L ++L+ Sbjct: 200 LFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAG--PRKMDALTRILEV 257 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M I+F K+ + L+ +GF+ AI+G+I+Q R + +S K+GTI ++ Sbjct: 258 EEGDAM---IVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDIL 314 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V + + + Sbjct: 315 IATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKS 374 Query: 360 IEKLIEKKV 368 IEK K+ Sbjct: 375 IEKATRSKL 383 >gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC 43183] gi|167700298|gb|EDS16877.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC 43183] Length = 372 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 227/368 (61%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL ++ ++ A+ + GY PTPIQ+K IP L D+ G AQTGTGKTA+F +P++ Sbjct: 1 MTFKDLNITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + R + + LIL PTRELA Q+++ + Y K + ++ GG+ AQ L Sbjct: 61 QHLQVLKNRDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLH 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD N+G + ++N+ V+DEADRMLDMGFI I+ + +P +QT Sbjct: 121 KGVDILVATPGRLLDLMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM D + ++ + L+ P +I + SST +TIE + + +K LL +L Sbjct: 181 LFFSATMPDTIIALTNSLLKQPVKITITPKSSTVDTIEQTIY--FVEKKEKSKLLISILH 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ ++F K N + L K G AIHGN Q +R L NFK G I++M+ Sbjct: 239 KTEG-QSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K ++ I Sbjct: 298 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQEERKLVNDI 357 Query: 361 EKLIEKKV 368 +KL KK+ Sbjct: 358 QKLTGKKL 365 >gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans DSM 574] gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans DSM 574] Length = 532 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 226/366 (61%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L +V ++D G+ +PTPIQ +PLVL HD+ G AQTGTGKTA+F +P++ Sbjct: 10 FGNLELDSCIVQGLVDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTAAFGIPLVAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L R R + +I+ PTRELA QV + K G+ V + GG E Q + L +G Sbjct: 70 LN---FRKRGVQAIIITPTRELAIQVGEEINKIGRYRRARVLPIYGGQSIERQIRSLRQG 126 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH R L ++ + ++V+DEAD MLDMGFI I+ I P RQTLL Sbjct: 127 VHVVVGTPGRLLDHLRRQTLKLDQVSMVVLDEADEMLDMGFIDDIEEILRHTPPERQTLL 186 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +E+ +++ ++ +PK + V+ + TA +IE + A K L ++L + Sbjct: 187 FSATMPEEISRLARQYMTDPKFVTVSKANITAPSIEQIYYE--APEKHKLEALCRILDTT 244 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + GI+FC K+ V L L+ +G++ ++HG++ Q+ R ++ F+ G ++L+VA+ Sbjct: 245 E-ITQGIVFCRTKRGVDELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLVAT 303 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV N+D+P E Y+HRIGRTGRAGR G A T++ + + + IE Sbjct: 304 DVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPREYRQLRLIEN 363 Query: 363 LIEKKV 368 L + ++ Sbjct: 364 LTKTRI 369 >gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC 51100] gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC 51100] Length = 524 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 235/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N+IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLLII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|227536058|ref|ZP_03966107.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33300] gi|227243955|gb|EEI93970.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33300] Length = 450 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 5/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D + +++ A+ +AGY PT IQ K I VL D+ GIAQTGTGKTA+FVLPML Sbjct: 5 FEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPMLMK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ + + R LIL PTRELA Q+ ++ + + K +L +L GG+ + Q + LE+G Sbjct: 65 LKYAQGKDM--RALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENLEKG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR LD + G + + +++ LV+DEAD+M+DMGFI I I +VP RQ LL Sbjct: 123 VDIIVATPGRFLDLYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRKRQNLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM++ ++K++ +FL P IEV ++ A+T++ Q + K LLQ LL+ Sbjct: 183 FSATMSELVRKIAGDFLAFPTVIEVTEQATPAKTVQQAVYKVPNQKT-KLNLLQHLLKDD 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS--VCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+FC K N+ H LE++ + V IH N Q +R+ ++ FKEG I+++V Sbjct: 242 ESFHRLIVFCKTKTVADNVFHFLERKYGTEQVRVIHANKGQNTRINSINAFKEGNIRILV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ +V HV NF+VP E+Y+HRIGRTGRA G A T + ++ I Sbjct: 302 ATDVAARGLDVSNVSHVINFEVPIVIEDYVHRIGRTGRAFNEGDAITFSNPAEEYYVRKI 361 Query: 361 EKLIEKKVDWL 371 EKLI + + L Sbjct: 362 EKLIRQSIPVL 372 >gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18] gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18] Length = 732 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 151/375 (40%), Positives = 234/375 (62%), Gaps = 9/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL +V+ A+ + GY KP+PIQ +TIPL+L+ HDV G+AQTGTGKTA+F LP L+ Sbjct: 63 FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 122 Query: 63 ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L R + L+L PTRELA QVA+ F Y + + TV + GG P+ Q Sbjct: 123 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 182 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGA V++ TPGR++DH +G L ++N++ LV+DEAD ML MGF ++ I P ++ Sbjct: 183 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSK 242 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM + ++K+++ +L +P+ + V ++T+ I ++ +S K + ++ Sbjct: 243 QVALFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVM--HSHKLDAMTRV 300 Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ ++ +GII F KK + L+ +GF+ AI+G+I Q+ R + + ++G I Sbjct: 301 LEVENY--DGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRID 358 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + V N+D+P+ E+Y+HRIGRTGRAGR G A V + + Sbjct: 359 ILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYML 418 Query: 358 DAIEKLIEKKVDWLN 372 IEK +KV+ ++ Sbjct: 419 RQIEKATRQKVEPMH 433 >gi|268592819|ref|ZP_06127040.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131] gi|291311604|gb|EFE52057.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131] Length = 643 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 240/381 (62%), Gaps = 10/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA+LGLS ++ A+ D GY KP+PIQ + IPL++ +DV G+AQTG+GKTA+F LP+L Sbjct: 7 ISFAELGLSASILTALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 ++ ++ P+ L+L PTRELA QVA+ + K+ N + V L GG ++ Q + L Sbjct: 67 HNIDPD---LKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G +++ TPGR+LDH RG L ++ ++ LV+DEAD ML MGFI ++NI S +P Q Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+++PK I + +T I + Y +K L + L Sbjct: 184 TALFSATMPEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGM--RKNEALVRFL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + +LE+ G++ A++G+++Q R + L K+G + ++ Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356 +A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++ Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360 Query: 357 IDAIEKLIEKKVDWLNGDLSS 377 ++ KL +V+ + DL S Sbjct: 361 VERTMKLTIPEVELPDADLLS 381 >gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405] gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057] Length = 523 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPNHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|167754851|ref|ZP_02426978.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402] gi|167704901|gb|EDS19480.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402] Length = 436 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L ++ AV + Y P+PIQ + IP ++ D+ G A+TGTGKTA+F LP+L Sbjct: 1 MKFSELELIEPLLNAVKEMKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + PRT LIL PTRELA Q+ + FE NL A++ GG+ +Q Sbjct: 61 QKLYLRDESEKYPRTIKALILAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVT 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+ RG DVLI TPGR++D +N+G + + ++E LV+DEADRMLDMGFI I+ I +P Sbjct: 121 KINRGIDVLIATPGRLIDLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRR 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT+LFSAT+ DE++ + + L +P +I +++ + T E I + K LL + Sbjct: 181 HQTMLFSATLPDEIKHLVSDLLNDPLKIMISSGNVTVEKINQSLY--FVDKVNKAKLLIK 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL++ + N I+F K+NV LC L K + IHG+ Q +R++ L+NFK ++ Sbjct: 239 LLENPQ-IYNAIVFVRTKRNVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VASD+AARG+DI ++ HV NFD+P++AENY+HRIGRT RAG G+A T + ++ + Sbjct: 298 VLVASDIAARGIDIDELTHVINFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALL 357 Query: 358 DAIEKLIEKKV 368 I+K I + + Sbjct: 358 KDIQKFINQDI 368 >gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1] gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1] Length = 520 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 236/371 (63%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS V+ + GYV P+PIQ K+IP++L+ D+ G AQTGTGKT +F +L+ Sbjct: 6 FKDLGLSSDVLKGIEMMGYVSPSPIQEKSIPVLLEGQDIIGQAQTGTGKTLAFGSVLLSK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++K V+ LIL PTRELA Q+ + ++ GK NL++ + GG E Q K L+RG Sbjct: 66 IQKEGKHVK---ALILSPTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKDLKRG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 AD+++ TPGR+ D R L +NNI+ +V+DEAD ML+MGF+ I+ I P +QT+L Sbjct: 123 ADIVVGTPGRVQDLMRRRVLKINNIDFMVLDEADEMLNMGFVEDIETILKATPDNKQTVL 182 Query: 183 FSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM ++K++ N++Q+ I++ + + TA T+ + T + K L ++L S Sbjct: 183 FSATMPATIKKIASNYMQDDYMHIQIKSKTKTASTVSQYYFETRP--TNKFETLCRILDS 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + M+N IIFC K++V + S++++ + V A+HG++ Q R L FK G IQ +VA Sbjct: 241 RQ-MENTIIFCKTKRSVDEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ ++ HV N+++P E YIHRIGRTGRA + G+A++LV + + +I+ Sbjct: 300 TDVAARGIDVDNISHVINYEMPQDEELYIHRIGRTGRANKKGEAYSLVTNREKNFLMSIQ 359 Query: 362 KLIEKKVDWLN 372 K ++ L+ Sbjct: 360 KRTNSHIEKLD 370 >gi|322831220|ref|YP_004211247.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] gi|321166421|gb|ADW72120.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] Length = 640 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 232/364 (63%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ A ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 69 ID---ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 186 LFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGL--RKNEALVRFLEA 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 362 Query: 362 KLIE 365 + ++ Sbjct: 363 RTMK 366 >gi|294056345|ref|YP_003550003.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615678|gb|ADE55833.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] Length = 465 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 156/374 (41%), Positives = 227/374 (60%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L L+ + A+ D GY P+PIQ + IP++L+ D+ AQTGTGKTA+F LP+L Sbjct: 4 LTFQELPLAEPIQRALSDKGYTTPSPIQARAIPVLLEGGDLLACAQTGTGKTAAFALPLL 63 Query: 61 -TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 I E+ R R R L+L PTRELA QVA+NFE YGK+ ++ GG+ + Q K Sbjct: 64 HGIAERPRKPFRRGVRHLVLTPTRELAVQVAENFELYGKHIKFRSMMVYGGVSEKPQIKT 123 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ PGR++D ++G + ++ +E ++DEADRMLDMGFI I+ I + +P R Sbjct: 124 LFQGVDVLVACPGRLIDLMDQGHVDLSQVETFILDEADRMLDMGFIRDIRKIAAKLPKKR 183 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQ 236 QTLLFSATM E+ K+ L P I + +TA+ ++ CF+ A K LL+ Sbjct: 184 QTLLFSATMAPEITKLGHAMLHQPAEIRIAPQGTTADKVDQSLCFIGKKA---KPKLLLE 240 Query: 237 QLLQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L + D N ++F K NL L +G AIHGN Q +R K L ++ G Sbjct: 241 MLHRRFDEQPNELSLVFTRTKHGAKNLAKKLNGEGLKADAIHGNKSQSAREKTLERYRRG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+AARG+D+ ++ V NFD+P A+ Y+HRIGRT RAG G A + ++E++ Sbjct: 301 EIDILVATDVAARGIDVKNITLVINFDLPMEADAYVHRIGRTARAGASGHAVSFCSEEEV 360 Query: 355 KHIDAIEKLIEKKV 368 + IE+LI+K V Sbjct: 361 ALLRQIERLIKKTV 374 >gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205] Length = 598 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 228/368 (61%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G SP+++ A+ + GY +P+PIQ IP ++ D+ G AQTGTGKTA+F LPML Sbjct: 33 FAAFGFSPEILEALEEIGYSEPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPMLAA 92 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 L++ + R P+ L+L PTRELA QVAD+F+ Y K +L V + GG F Q KL+R Sbjct: 93 LDETQ---RTPQVLVLTPTRELAIQVADSFKSYATKLPHLRVLPVYGGSDFRDQIHKLKR 149 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +G L ++ + LV+DEAD ML MGFI ++ + S +P RQ + Sbjct: 150 GVQVVVGTPGRVMDHMRQGTLDVSGLRSLVLDEADEMLRMGFIDDVEWVLSQLPEKRQVV 209 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S +L +P I + T S + I+ F+ K L ++L++ Sbjct: 210 LFSATMPSEIRRISHQYLNSPAEITIKTKGSDSSRIQQRFITVNGPM--KLEALSRVLEA 267 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T + IIF K V + +LE +G+ V ++G++ Q R + + K GT+ ++VA Sbjct: 268 E-TKEGVIIFARTKAITVTVAEALEAKGYGVAVLNGDVAQSQRERTIERLKNGTVDVLVA 326 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E Y+HRIGRTGRAGR G A V + + I +E Sbjct: 327 TDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRTGNAILFVTPRERRFITGLE 386 Query: 362 KLIEKKVD 369 + + + ++ Sbjct: 387 RAVGRPIE 394 >gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales bacterium HTCC2181] gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales bacterium HTCC2181] Length = 427 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 221/369 (59%), Gaps = 2/369 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L ++ A+ +AGY +PTPIQ K+IP ++ V AQTGTGKTA+FVLP+L Sbjct: 1 MSFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R+ R PR LI+ PTRELA Q+ D+ +KY + + + GGI + QN+ Sbjct: 61 DKLTKNRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLRINSITITGGISYGLQNRMFS 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+L+ TPGR+LD + + K+ +E++++DEADRMLDMGF+P I+ I + +Q Sbjct: 121 KPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQM 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSAT +QK+++ FL NP I + S + I+ Q S K +L ++ Sbjct: 181 LMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQ-SHKQQMLDHFIK 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + IIF K+ L L A+HG++ Q SR K ++ FK +++V Sbjct: 240 N-DEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+DLA+RG+D+ ++ HVFN+D+P AE+YIHRIGRTGRA G A +LV+ D + + I Sbjct: 299 ATDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKI 358 Query: 361 EKLIEKKVD 369 E+ K++ Sbjct: 359 ERFTNLKIE 367 >gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis Il1403] gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis Il1403] gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis CV56] Length = 547 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 151/381 (39%), Positives = 236/381 (61%), Gaps = 13/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS +V + + GY +PTPIQ +TI L L+ DV G AQTGTGKTA+F LP + Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ L++ PTRELA Q + ++GK+ L V + GG E Q K L+ Sbjct: 61 EKIDASNPAIQ---ALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR++D R + ++ +E L++DEAD ML+MGF+ I I P RQT Sbjct: 118 AGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEARQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++K+ F++NP+ I++ TA+ I+ FV T + +K +L +LL Sbjct: 178 LLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKT--KEFEKFDVLTRLLD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +G+ +HG++DQ R+ +L +FK G I ++V Sbjct: 236 VERP-ELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ AI Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 E + +K + L PP Sbjct: 355 ENMTKKP-------MKGLKPP 368 >gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03] gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03] Length = 485 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 151/388 (38%), Positives = 241/388 (62%), Gaps = 15/388 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+++ L P+++ A+ +G+ + TPIQ KTIPLVL+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+K ++ +++EPTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 61 QNLDKQHDSIQ---AIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+LDH RG + ++ ++ +V+DEAD MLDMGFI I++I + QT Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSKHQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ E F+ +P+ +++ TA I+ FV A+ ++K +L +L+ Sbjct: 178 LLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFV--RAKENEKFDILCRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ +IF K+ V L L+ +G++ IHG++ Q RM +L F++G + ++V Sbjct: 236 VQNP-DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ I Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354 Query: 361 EKLIEKKV---------DWLNGDLSSLN 379 E+L KK+ + G LS+ N Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAAN 382 >gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334] gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23] gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334] gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23] gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W] gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II] Length = 502 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 226/368 (61%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ A+ +G+ + TPIQ +TIPLVL DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++K R + L++ PTRELA Q + + G++ + V + GG Q ++L Sbjct: 61 QNIDKAD---RSIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLS 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGRILDH R L + N+++LV+DEAD MLDMGFI I+ I +P RQT Sbjct: 118 EHPQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ + +++ F+ P +++ TA+T+E +V A+ +K ++ +L Sbjct: 178 LLFSATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVR--AKDYEKFDVMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD +IF K+ V L L+ +G+ IHG++ Q+ RM +L FK G + +V Sbjct: 236 VQDP-DLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG G + T V +I+++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354 Query: 361 EKLIEKKV 368 E L +K++ Sbjct: 355 EDLTKKRM 362 >gi|313500956|gb|ADR62322.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1] Length = 592 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 154/352 (43%), Positives = 225/352 (63%), Gaps = 12/352 (3%) Query: 35 VLQRHDVCGIAQTGTGKTASFVLPMLTIL-------EKGRARVRMPRTLILEPTRELAAQ 87 +LQ D+ AQTGTGKT F LP+L L + R R PR L+L PTRELAAQ Sbjct: 1 MLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQ 60 Query: 88 VADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNI 147 V D+F+ Y ++ L A + GG+ Q + + +G DVL+ PGR+LD +GK+ + ++ Sbjct: 61 VHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHV 120 Query: 148 EILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV 207 EILV+DEADRMLDMGFI ++ + + +P RQ LLFSAT + ++ +++ LQNP+RIEV Sbjct: 121 EILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLQNPERIEV 180 Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267 P++T E IE A S K ALL L+ + + ++F K L LEK Sbjct: 181 TPPNTTVERIEQRVYRLPA--SHKRALLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEK 237 Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327 QG + AIHGN Q +R K L++FK +++++VA+D+AARGLDI + HV NF++PN E Sbjct: 238 QGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEE 297 Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379 +Y+HRIGRTGRAGR G+A +LVA ++ K + +IE++ ++++ +GDL + Sbjct: 298 DYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRI--ADGDLMGFD 347 >gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] Length = 546 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 146/366 (39%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ GL PKV+ A+ + G+ + TPIQ K+IP+ L D+ G AQTGTGKTA+F +P++ Sbjct: 4 FAEFGLEPKVLQAITELGFEEATPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIPLINK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + R+ LI+ PTRELA QVA+ K + L + GG Q + L++ Sbjct: 64 IPVTEDRIV---ALIMTPTRELAIQVAEEIGKLTRYKGLRSLPIYGGQEIGRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH NR + + +++ +++DEAD MLDMGF+ I +I S+VP RQT+L Sbjct: 121 PQIIIGTPGRLLDHINRKTIKLADVQTVILDEADEMLDMGFMEDITSILSMVPAERQTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +Q++++ FL NP+ + V +A I+ ++ + + +K L +L+ Sbjct: 181 FSATMPPNIQRLAQTFLNNPEHVSVIPKQVSAPLIDQAYIEVHER--QKFEALSRLI-DM 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ + IIF K+ V L +L+K+G+S +HG++ Q R ++ F++G+I ++VA+ Sbjct: 238 ESPELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ V HV NFD+P E+Y+HRIGRTGRAG+ G A++ V + H+ IEK Sbjct: 298 DVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPRETDHLHFIEK 357 Query: 363 LIEKKV 368 + K+ Sbjct: 358 VTRHKI 363 >gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 594 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 156/366 (42%), Positives = 227/366 (62%), Gaps = 10/366 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++V AV + GY +PT IQ + IP++L HD+ +QTGTGKTA+F LPML Sbjct: 17 MTFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPML 76 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 ++ + G + +LIL PTREL QVA+ +F KY + N +A + GG P + Q + Sbjct: 77 SLTQPGDKK--RTNSLILCPTRELCMQVAEEMRSFSKYKQGVN--IACVYGGSPIDKQIR 132 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+RGAD+++ TPGR++DH R + +++ +V+DEAD ML+MGFI I+ I S +P Sbjct: 133 DLKRGADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEE 192 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ FSATM E+ K+SE FL P+RI ++ + T I+ + ++ K L Q Sbjct: 193 RQFAFFSATMPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESR--DKVDLTIQ 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LLQ T +IFCN KK V L L K GF +HG++ Q R ++S FK+G + Sbjct: 251 LLQLHKT-SGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVS 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+D+ + V N+D+P E Y+HRIGRTGRAG+ G A TLV++ I Sbjct: 310 VLIATDVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAI 369 Query: 358 DAIEKL 363 IE+L Sbjct: 370 KQIERL 375 >gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21] gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21] Length = 532 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 153/382 (40%), Positives = 233/382 (60%), Gaps = 10/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L K++ A+ D G+ +P+PIQ IPL L+ D+ G AQTGTGKTA+F +P++ Sbjct: 9 FEDLNLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQS 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ + R + L++ PTREL QVA+ K G+ + V + GG P E Q + L+ G Sbjct: 69 IDE---KNRHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKHG 125 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH RG + +++I LV+DEAD MLDMGFI I+ I VP RQT+L Sbjct: 126 VQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTML 185 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + +S+ +++ PK + ++ TA TI+ + T + C ++L + Sbjct: 186 FSATMPRPILSISKKYMRTPKVVAIHKEIVTAPTIDQYYYETRDKVDGLC----RILDTT 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D K IIFC KK V L +L +G+ +HG++ Q R +++ F++ + ++VA+ Sbjct: 242 DDCKM-IIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILVAT 300 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV NFDVP E+Y+HRIGRTGRAG G A T + + + + IE+ Sbjct: 301 DVAARGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIER 360 Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384 ++ K+ + G L + LEK Sbjct: 361 SVKTKI--IRGQLPTDANVLEK 380 >gi|255533113|ref|YP_003093485.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346097|gb|ACU05423.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM 2366] Length = 444 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 157/369 (42%), Positives = 233/369 (63%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+ +++ AV DAG+ + TPIQ K I VL D+ GIAQTGTGKTA++VLP+L Sbjct: 5 FEDFNLNRQILNAVADAGFTEATPIQEKAIAPVLSGQDIFGIAQTGTGKTAAYVLPILMQ 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ + R LIL PTRELA Q+A++ + + +L ++ GGI + Q ++++ G Sbjct: 65 LKYAQGDA--ARALILAPTRELAMQIAEHVKMFAAYTDLRSVVIFGGIGPKTQIEQIKAG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D++I TPGR LD + G + ++ LV+DEAD+M+DMGFI I I +VP RQ LL Sbjct: 123 VDIIIATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRKRQNLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM++ +QK++ +FL+NP IEV ++ A T+ + K LLQ L+++ Sbjct: 183 FSATMSNLVQKIAGDFLKNPTIIEVAEQATPAATVTQTLYEV-PNFKTKINLLQHLMKND 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGF---SVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + K IIFC + K V + +S + F +V IH N Q +R+ ++NFKEG I+++ Sbjct: 242 EEFKRLIIFC-KTKTVADNIYSFITRRFGEDAVRVIHANKGQNTRINSINNFKEGNIRVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RG+D+ +V HV NFDVP E+Y+HRIGRTGRA G A T + + +I Sbjct: 301 VATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRAYAKGDALTFCSPAEKYYIQK 360 Query: 360 IEKLIEKKV 368 IEKLI +++ Sbjct: 361 IEKLIRQQI 369 >gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp. holarctica 257] gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp. holarctica 257] Length = 441 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 158/398 (39%), Positives = 249/398 (62%), Gaps = 8/398 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I +L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE LI + + L G ++ N P+ ++ N A+K Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPIT--SMSHKNKAKK 393 >gi|25027815|ref|NP_737869.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens YS-314] gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314] gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens YS-314] gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314] Length = 736 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 148/361 (40%), Positives = 227/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL +V+ AV G+ P+PIQ +TIP+++ HDV G+AQTGTGKTA+F LP+L+ Sbjct: 107 FDALGLPQQVLDAVRKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTGKTAAFALPVLSR 166 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++K VR P+ L+L PTRELA QVAD+F+ + + L V + GG + Q L R Sbjct: 167 IDKS---VRSPQALVLAPTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGIQLSGLRR 223 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +G L ++ + LV+DEAD ML+MGF ++ I + P +Q Sbjct: 224 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVA 283 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S+ +L NP+ I V + + TA I F++ + K L ++L+ Sbjct: 284 LFSATMPNGIRRLSKQYLNNPQEISVKSETRTATNITQRFLSVA--HRNKMDALTRILEV 341 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K + L +GFS AI+G+I Q R + + K+G + ++VA Sbjct: 342 TE-FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 400 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+PN E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 401 TDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 460 Query: 362 K 362 + Sbjct: 461 R 461 >gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032] gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032] Length = 513 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 153/369 (41%), Positives = 230/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ A+ G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F +P++ Sbjct: 22 FQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLVEK 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ ++ +I+ PTRELA QV++ K G++ V + GG Q + L++ Sbjct: 82 IDPASPNIQ---AIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKKN 138 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR + + N+E +V+DEAD ML+MGFI I++I S VP QTLL Sbjct: 139 PHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTLL 198 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ NP+ ++V T I+ ++ + + KK L +LL Q Sbjct: 199 FSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHER--KKFDTLTRLLDIQ 256 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM L FKEG+I ++VA+ Sbjct: 257 -SPELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVAT 315 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAGR G A T + + + AIE+ Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAIEQ 375 Query: 363 LIEKKVDWL 371 ++K+D + Sbjct: 376 TTKRKMDRM 384 >gi|123443103|ref|YP_001007077.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090064|emb|CAL12927.1| putative ATP-dependent RNA helicase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 451 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323] gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4] gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus gasseri MV-22] gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC 33323] gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4] gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus gasseri MV-22] Length = 485 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/388 (38%), Positives = 241/388 (62%), Gaps = 15/388 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+++ L P+++ A+ +G+ + TPIQ KTIPLVL+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+K ++ +++EPTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 61 QNLDKQHDSIQ---AIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+LDH RG + ++ ++ +V+DEAD MLDMGFI I++I + QT Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSKHQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ E F+ +P+ +++ TA I+ FV A+ ++K +L +L+ Sbjct: 178 LLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVR--AKENEKFDILCRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ +IF K+ V L L+ +G++ IHG++ Q RM +L F++G + ++V Sbjct: 236 VQNP-DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ I Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354 Query: 361 EKLIEKKV---------DWLNGDLSSLN 379 E+L KK+ + G LS+ N Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAAN 382 >gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str. Zhang] gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str. Zhang] Length = 502 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 226/368 (61%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ A+ +G+ + TPIQ +TIPLVL DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFKELGLDYDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++K R + L++ PTRELA Q + + G++ + V + GG Q ++L Sbjct: 61 QNIDKAD---RSIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLS 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGRILDH R L + N+++LV+DEAD MLDMGFI I+ I +P RQT Sbjct: 118 EHPQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ + +++ F+ P +++ TA+T+E +V A+ +K ++ +L Sbjct: 178 LLFSATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVR--AKDYEKFDVMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD +IF K+ V L L+ +G+ IHG++ Q+ RM +L FK G + +V Sbjct: 236 VQDP-DLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG G + T V +I+++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354 Query: 361 EKLIEKKV 368 E L +K++ Sbjct: 355 EDLTKKRM 362 >gi|113971144|ref|YP_734937.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113885828|gb|ABI39880.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 433 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 225/370 (60%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F P+++ A+ D GY K TPIQ + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + + + R LIL PTRELAAQVADN E Y K N +V + GG+ E Q +K Sbjct: 61 QKMAENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGAD+++ TPGR+L+H L +++I+ LV+DEADRMLDMGF IQ I V R Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++K++ + P+ I + ++TA+T+ V + +K LL +L Sbjct: 181 QNLLFSATFSSAVKKLANEMMVKPQVISADKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F + L L G +HG Q SR + L F G +++ Sbjct: 239 I-GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIP + +V NFD+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +K+ Sbjct: 358 DIEKLIGQKI 367 >gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Bacillus pumilus ATCC 7061] gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Bacillus pumilus ATCC 7061] Length = 496 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 153/369 (41%), Positives = 230/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ A+ G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F +P++ Sbjct: 5 FQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLVEK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ ++ +I+ PTRELA QV++ K G++ V + GG Q + L++ Sbjct: 65 IDPASPNIQ---AIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR + + N+E +V+DEAD ML+MGFI I++I S VP QTLL Sbjct: 122 PHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ NP+ ++V T I+ ++ + + KK L +LL Q Sbjct: 182 FSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHER--KKFDTLTRLLDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM L FKEG+I ++VA+ Sbjct: 240 -SPELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAGR G A T + + + AIE+ Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAVTFITPREKDMLRAIEQ 358 Query: 363 LIEKKVDWL 371 ++K+D + Sbjct: 359 TTKRKMDRM 367 >gi|45440809|ref|NP_992348.1| ATP-dependent RNA helicase RhlE [Yersinia pestis biovar Microtus str. 91001] gi|45435667|gb|AAS61225.1| Superfamily II DNA and RNA helicases [Yersinia pestis biovar Microtus str. 91001] Length = 470 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 20 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 79 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 80 QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 136 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 137 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 196 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 197 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 254 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 255 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 313 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 314 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 373 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 374 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 413 >gi|270265065|ref|ZP_06193328.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13] gi|270040999|gb|EFA14100.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13] Length = 655 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 148/377 (39%), Positives = 237/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ A ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 69 LD---ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 126 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+++P+ + + + +T I + AQ +K L + L++ Sbjct: 186 LFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWT--AQGMRKNEALVRFLEA 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 362 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 363 RTMKLTIPEVELPNAEL 379 >gi|114047740|ref|YP_738290.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113889182|gb|ABI43233.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 487 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/363 (41%), Positives = 222/363 (61%), Gaps = 4/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL +V AV + GY PTPIQ K IP +L +V AQTGTGKTASFVLP+L Sbjct: 1 MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + R + R +IL PTRELA QV +N +Y K LT + GG+ Q K+L Sbjct: 61 HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + + +LV+DEADRMLDMGFI I +I +P RQ Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ ++++ + + IE++ S+ + I+ T KK ALL L+ Sbjct: 181 NLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWL--TTVDKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++ +IF K L LEK+G A H Q R ++L +FK G + + Sbjct: 239 Q-ENNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI + V N+D+P+ A++YIHRIGRTGRAG G+A + V+K+D +++ A Sbjct: 298 VATGVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357 Query: 360 IEK 362 IE+ Sbjct: 358 IER 360 >gi|117921427|ref|YP_870619.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117613759|gb|ABK49213.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 433 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 228/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F P+++ A+ D GY K TPIQ + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 -TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++E ++ R LIL PTRELAAQVADN E Y K N +V + GG+ E Q +K Sbjct: 61 QKMVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGAD+++ TPGR+L+H L +++I+ LV+DEADRMLDMGF IQ I V R Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++K++ + + P+ I + ++TA+T+ V + +K LL +L Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F + L L G +HG Q SR + L F G +++ Sbjct: 239 I-GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIP + +V NFD+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +K+ Sbjct: 358 DIEKLIGQKI 367 >gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. holarctica LVS] gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp. holarctica OSU18] gi|167010034|ref|ZP_02274965.1| ATP-dependent RNA helicase [Francisella tularensis subsp. holarctica FSC200] gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. holarctica LVS] gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp. holarctica OSU18] Length = 441 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 158/398 (39%), Positives = 249/398 (62%), Gaps = 8/398 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I +L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE LI + + L G ++ N P+ ++ N A+K Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPIT--SMSHKNKAKK 393 >gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219] gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM 5219] Length = 431 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/362 (41%), Positives = 231/362 (63%), Gaps = 6/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL LS + AV D G+ +PTPIQ ++IP +++ DV G AQTGTGKTA+F +P L Sbjct: 4 LTFKDLNLSKDIERAVEDMGFEEPTPIQSQSIPYLMEGKDVIGQAQTGTGKTAAFGIPAL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ +V++ L+L PTRELA QVA+ K K N + + GG P + Q K L Sbjct: 64 EMLDVKSKKVQV---LVLCPTRELANQVAEEMSKLAKYQNTKMLPVYGGQPIDRQIKALR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG ++I TPGRI+DH R L +++++++V+DEAD MLDMGF I+ I S P +QT Sbjct: 121 RGVHIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEMLDMGFREDIEFILSRAPGKKQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM + K+++ + QNP+ ++ T IE + + + K +L +L+ Sbjct: 181 VLFSATMPKPIIKLTKKYQQNPQMVKTVHKKLTVPQIEQYYFEV--KDNAKTEVLCRLID 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K+ ++FCN KKNV +L+ +G+ V +HG++ Q R +++SNF++G I+ +V Sbjct: 239 IYN-FKSSLVFCNTKKNVDKQVETLKARGYLVDGMHGDMRQAQRERVMSNFRKGEIETLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + VFN+D+P E+Y+HRIGRTGRAG+ G A T +DI+ I I Sbjct: 298 ATDVAARGIDVESIEAVFNYDIPQDEESYVHRIGRTGRAGKEGVAITFAFGKDIRKIKTI 357 Query: 361 EK 362 +K Sbjct: 358 QK 359 >gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697] gi|217985744|gb|EEC52085.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697] Length = 392 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 226/368 (61%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL ++ ++ A+ + GYV PTPIQ K IP +L D+ G AQTGTGKTA+F +P++ Sbjct: 21 MTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPII 80 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ ++ + LIL PTRELA Q+++ + Y K + ++ GG+ Q L Sbjct: 81 QQLQADKSLNNSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRTQVNMLH 140 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD N+G + +NNI+ V+DEADRMLDMGFI I+ + +P +QT Sbjct: 141 KGVDILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 200 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D + ++ + L+ P +I + SST + IE + + +K LL +L Sbjct: 201 LLFSATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVY--FVEKKEKSKLLISILH 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++F K N + L K G AIHGN Q +R L NFK G I++M+ Sbjct: 259 KTQG-QSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMI 317 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A + ++E+ K ++ I Sbjct: 318 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDI 377 Query: 361 EKLIEKKV 368 +KL KK+ Sbjct: 378 QKLTGKKL 385 >gi|238761773|ref|ZP_04622747.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC 33638] gi|238699887|gb|EEP92630.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC 33638] Length = 658 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 144/364 (39%), Positives = 232/364 (63%), Gaps = 6/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA + K+ + + V L GG ++ Q + L + Sbjct: 69 ID---PTLKAPQVLVLAPTRELAIQVAQALTDFSKHMDGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I F Y+KK AL+ + L+S Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALV-RFLES 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + +E Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNVE 363 Query: 362 KLIE 365 + ++ Sbjct: 364 RTMK 367 >gi|332161012|ref|YP_004297589.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604884|emb|CBY26382.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp. palearctica Y11] gi|325665242|gb|ADZ41886.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 451 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|238759754|ref|ZP_04620912.1| ATP-dependent RNA helicase rhlE [Yersinia aldovae ATCC 35236] gi|238701986|gb|EEP94545.1| ATP-dependent RNA helicase rhlE [Yersinia aldovae ATCC 35236] Length = 452 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQITQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM 12042] gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM 12042] Length = 424 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 230/368 (62%), Gaps = 10/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + P ++ GY PT IQ K IP VL+ D+ G+AQTGTGKTA+F LP+L Sbjct: 1 MKFNELPIHPSILKNCQRMGYTTPTKIQQKAIPPVLEGRDLLGLAQTGTGKTAAFALPIL 60 Query: 61 TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L +KG+ R + L+L PTRELA Q+ DNF+ YG+ L ++ GG+ AQ Sbjct: 61 DQLMKQPQKGK---RAIKALVLTPTRELAIQIVDNFQLYGQGLPLKTVVIFGGVKQGAQV 117 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L++GAD+LI TPGR+LD + L ++ +EI V+DEADRMLDMGFI ++ +++L+ Sbjct: 118 DQLKKGADILIATPGRLLDLVGQRLLDLSQVEIFVLDEADRMLDMGFIHDVKRVSALLVN 177 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +QTLLFSATM E+ ++ + L+NP R+E S+ E IE Y + S+K LL Sbjct: 178 KKQTLLFSATMPKEIAGLAASLLKNPVRVEATPVSTPIEKIEQRVY--YVEKSEKNDLLL 235 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++L+ ++ + + ++F K + L K AIHGN Q +R K L+ FK I Sbjct: 236 RVLKKEE-VTSALVFTRTKHEADRVVRFLTKGHVQAMAIHGNKSQNARQKALAAFKNHEI 294 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+DI + HV N+++PN +E Y+HRIGRT RAG+ G A + ++ + Sbjct: 295 QVLVATDIAARGIDIEKLSHVINYNIPNISETYVHRIGRTARAGQEGIAISFCQNDERAY 354 Query: 357 IDAIEKLI 364 + IEKLI Sbjct: 355 LKDIEKLI 362 >gi|77359594|ref|YP_339169.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125] gi|76874505|emb|CAI85726.1| putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein family [Pseudoalteromonas haloplanktis TAC125] Length = 432 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 168/383 (43%), Positives = 233/383 (60%), Gaps = 24/383 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P ++ A+ Y +PT IQIKTIP +L DV G AQTGTGKTA+FVLP+L Sbjct: 23 FSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLLHK 82 Query: 63 L-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L E G ARV +IL PTRELA QV +FEKY + N+ AL GG Q Sbjct: 83 LLNTPKKDEPGVARV-----VILTPTRELAQQVFASFEKYAQGTNIKGALAYGGASIGPQ 137 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L + A V++ TPGR+LDH +G +++++++ LV DEADRMLDMGFI I+ I +P Sbjct: 138 IKAL-KDAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIP 196 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT D + +S+ L+NP+ +EV+ +S A +E YS Sbjct: 197 GDRQTLLFSATFDDSVFALSKKLLKNPELVEVDKRNSAAVEVEQVI------YSVDEDRK 250 Query: 236 QQLLQSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++L+ MKN +IF K+ L + K G +IHG+ Q +R + L NFK Sbjct: 251 RELVSHMIGMKNWRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFK 310 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 EG +++VA+D+AARGLDIP + V NF++P AE+Y+HRIGRTGRAG G A +LV+ + Sbjct: 311 EGITRVLVATDVAARGLDIPTLRFVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSID 370 Query: 353 DIKHIDAIEKLIEKKV--DWLNG 373 + ++ IE L++ ++ WL G Sbjct: 371 EQWLLEEIEVLLDTRLTPQWLAG 393 >gi|114048383|ref|YP_738933.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113889825|gb|ABI43876.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 433 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 228/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F P+++ A+ D GY K TPIQ + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 -TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++E ++ R LIL PTRELAAQVADN E Y K N +V + GG+ E Q +K Sbjct: 61 QKMVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGAD+++ TPGR+L+H L +++++ LV+DEADRMLDMGF IQ I V R Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFNADIQKILQAVNKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++K++ + + P+ I + ++TA+T+ V + +K LL +L Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F + L L G +HG Q SR + L F G +++ Sbjct: 239 I-GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIP + +V NFD+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +K+ Sbjct: 358 DIEKLIGQKI 367 >gi|289607515|emb|CBI60784.1| unnamed protein product [Sordaria macrospora] Length = 404 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 149/255 (58%), Positives = 188/255 (73%), Gaps = 3/255 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGLS +++ +V D+GY +PTPIQ IP VL D+ IAQTGTGKTASFVLPM+ Sbjct: 151 MTFADLGLSDELLRSVNDSGYTEPTPIQAAAIPSVLMMRDLVAIAQTGTGKTASFVLPMI 210 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL +GR+R RMPR+LILEPTRELAAQVA+NFEKYG N+ L++ALLIGG+ Q LE Sbjct: 211 DILAQGRSRARMPRSLILEPTRELAAQVAENFEKYGANHKLSMALLIGGVSMGDQLAALE 270 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVLI TPGR++D F RGK+L+ +LVIDEADRMLDMGFIP I+ I + +P RQT Sbjct: 271 KGVDVLIATPGRLMDLFTRGKILLTGCSMLVIDEADRMLDMGFIPDIEEICTKLPKQRQT 330 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++ FL NPK IEV+ P+ST I V A +KK +L+ LL Sbjct: 331 LLFSATMPPPIKKLADKFLDNPKTIEVSRPASTNLNISQHVVPVAA--AKKREVLRTLLA 388 Query: 241 SQDTMKNGIIFCNQK 255 +D ++ IIFCN+K Sbjct: 389 HED-VRTAIIFCNRK 402 >gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 15912] gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 15912] Length = 523 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 235/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS +++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK + + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N+IE L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F++ P+ +++ T + ++ ++ + +K + +L+ Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYI--RVKEGEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + IIF K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIIFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ + Sbjct: 355 ENLTKKRMKGM 365 >gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] Length = 392 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 226/368 (61%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL ++ ++ A+ + GYV PTPIQ K IP +L D+ G AQTGTGKTA+F +P++ Sbjct: 21 MTFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPII 80 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ R + + LIL PTRELA Q+++ + Y + + ++ GG+ Q L Sbjct: 81 QQLQADRNLNKSIKALILTPTRELALQISECIDDYARYTQVCHGVIFGGVNQRTQVNMLH 140 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD N+G + +NNI+ V+DEADRMLDMGFI I+ + +P +QT Sbjct: 141 KGVDILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT 200 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D + ++ + L+ P +I + SST + IE + + +K LL +L Sbjct: 201 LLFSATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVY--FVEKKEKSKLLISILH 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++F K N + L K G AIHGN Q +R L NFK G I++M+ Sbjct: 259 KTQG-QSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMI 317 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A + ++E+ K ++ I Sbjct: 318 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDI 377 Query: 361 EKLIEKKV 368 +KL KK+ Sbjct: 378 QKLTGKKL 385 >gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175] gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175] Length = 520 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/383 (39%), Positives = 236/383 (61%), Gaps = 13/383 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ ++ G+ + TPIQ +TIP LQ DV G AQTGTGKTA+F LPML Sbjct: 12 MKFNELGLDSALLESIEKMGFEEATPIQAQTIPKALQGLDVIGQAQTGTGKTAAFGLPML 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ L++ PTRELA Q + + G++ + V + GG Q ++L+ Sbjct: 72 QKIDPSKKGVQ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADINRQIRQLK 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH +R L + +E LV+DEAD ML+MGF+ I++I VP RQT Sbjct: 129 ENPQIVVGTPGRLLDHISRRTLKLGAVETLVLDEADEMLNMGFLEDIESIIKQVPENRQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D+++++ F+++P+ + + + TA I+ FV + +K ++ +LL Sbjct: 189 LLFSATMPDDIKRIGVQFMKDPEHVRIKSNEMTATLIDQYFVK--CKDYEKFDIMTRLLD 246 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + I+F K+ V L LE +G+ IHG++ Q+ RM +L +FK + ++V Sbjct: 247 VQ-TPELTIVFGRTKRRVDELARGLEMRGYRAEGIHGDLSQQKRMSVLRDFKNNHLDILV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T V ++ ++ I Sbjct: 306 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVI 365 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383 E+L K+ ++SL PP + Sbjct: 366 EELTRKR-------MTSLRPPTQ 381 >gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus 273-4] gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus 273-4] Length = 567 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 232/369 (62%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL ++ ++ A+ +GY PTPIQ + IP LQ D+ AQTG+GKTA+FV+P+L Sbjct: 46 FTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVLDR 105 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L + + ++ + LIL PTRELA QV D+ Y K+ L L+GG P+ Q L++ Sbjct: 106 LSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKK 165 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH N G++ ++++EILV+DEADRMLDMGF I +I P RQT+ Sbjct: 166 GVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDRQTI 225 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240 + SAT + K++ +F +NP+R+ + S+ E + +C + K LL +++ Sbjct: 226 MCSATWDGPVGKIAASFTKNPERVSIKVESAHIEEKVYYC-----DDFDHKNRLLDKIVC 280 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D M+ IIF K++ L L++ G +HG++ Q R +I+ + + G +++V Sbjct: 281 HKD-MEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILV 339 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+P + HV N+D+P + E+Y+HRIGR GRAGR G A +L + +D ++AI Sbjct: 340 ATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNAI 399 Query: 361 EKLIEKKVD 369 + +++K++ Sbjct: 400 NRYLDRKME 408 >gi|238763827|ref|ZP_04624785.1| ATP-dependent RNA helicase rhlE [Yersinia kristensenii ATCC 33638] gi|238697957|gb|EEP90716.1| ATP-dependent RNA helicase rhlE [Yersinia kristensenii ATCC 33638] Length = 452 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|256829773|ref|YP_003158501.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578949|gb|ACU90085.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum DSM 4028] Length = 444 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 160/393 (40%), Positives = 231/393 (58%), Gaps = 19/393 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF+ ++ + D GYV PTPIQI+ IP VL DV G+AQTGTGKTA+F LP+L Sbjct: 1 MDFSSFSFDQRLNVGIRDCGYVTPTPIQIQAIPSVLAGKDVLGLAQTGTGKTAAFALPLL 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + VR P R L+L PTRELA Q+ + F GK + A + GG+ E K Sbjct: 61 QRMITDGISVRGPVRVLVLAPTRELALQIHETFISLGKQTGIRSAAVFGGV-GETPQVKA 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 R A VL+ PGR+LD NRG + ++++ LV+DEADRM DMGF+P ++ I + +P RQ Sbjct: 120 ARQASVLVACPGRLLDLVNRGLVDLSHVNALVLDEADRMFDMGFLPDLRRIMAKLPAKRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM E++K+++ L P ++V+ ++ E I H A +K LL+ L Sbjct: 180 NLLFSATMPPEIRKIADQVLVQPAVVQVSN-TAPPEKIRHTLYPVSA--GQKMGLLEAYL 236 Query: 240 --QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 D + +IF K +L LE++G ++ GN+ Q R + L F+ G + Sbjct: 237 GRTPHDCV---LIFTRTKHRAKSLARKLEQKGMLATSLQGNLSQNRRQEALDGFRSGKYR 293 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +MVA+D+AARG+D + HV NFD+P+ AE+Y HRIGRTGRA + G+A TLV+ ED I Sbjct: 294 IMVATDIAARGIDCVRISHVVNFDLPDTAESYTHRIGRTGRADKSGEAITLVSPEDSAQI 353 Query: 358 DAIEKLIEKKVDWL---------NGDLSSLNPP 381 +AIE+++ +++ + GD +S P Sbjct: 354 NAIERILGGRLERVRLEGFAYSSGGDEASFEEP 386 >gi|120555341|ref|YP_959692.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter aquaeolei VT8] gi|120325190|gb|ABM19505.1| ATP-dependent RNA helicase CsdA [Marinobacter aquaeolei VT8] Length = 528 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 150/363 (41%), Positives = 224/363 (61%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA+LGL P V+ AV GY P+PIQ ++IP +L + + G+AQTGTGKTA+F LP+L Sbjct: 24 LSFAELGLDPAVLEAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLL 83 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ A V P+ L+L PTRELA QVA+ F Y + N V + GG F Q + L Sbjct: 84 SRID---ANVAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGL 140 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RGA V++ TPGR+LDH +G L ++ ++ LV+DEAD ML MGFI ++ I + P T Q Sbjct: 141 KRGAQVIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQ 200 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++KV++ +L+N + + + + T E I + YA+ +K L ++L Sbjct: 201 RALFSATMPPQIKKVAQTYLKNATEVRIESETRTVERIAQFVLPVYAE--RKLDALTRIL 258 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + IIF K L L +G +V + G+++QR R + + + K G ++ Sbjct: 259 EVE-PFDASIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDII 317 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+P + HV N+DVP E YIHR+GRTGRAGR GKA LV + + Sbjct: 318 IATDVAARGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGRTGKAILLVTPRERSWLRT 377 Query: 360 IEK 362 +E+ Sbjct: 378 LER 380 >gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989] gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989] Length = 573 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 157/428 (36%), Positives = 251/428 (58%), Gaps = 24/428 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L ++ +++ GY P+PIQ +IP++ + D+ G AQTGTGKTA+F LP+L+ Sbjct: 12 FSELNLPEAILKTLVELGYETPSPIQAASIPIIQEGRDLLGQAQTGTGKTAAFALPLLSK 71 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + + P+ L+L PTRELA QVA+ F+ Y ++ + TV + GG ++ Q ++L+RG Sbjct: 72 IDPTK---KHPQLLVLAPTRELAIQVAEAFQTYSRHMSCTVLPIYGGQSYDNQLRQLKRG 128 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH R L ++ +E LV+DEAD ML MGFI ++ I P +RQ L Sbjct: 129 TQIIVGTPGRVMDHIRRKTLKLDQLEALVLDEADEMLRMGFIDDVEWILEHTPKSRQIAL 188 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++KV++ +L NPK I++ T +STA TI F + ++K ++L+ + Sbjct: 189 FSATMPKEIKKVADKYLVNPKHIKIETKTSTATTIRQRF--SIVNRNQKLDAFTRILEVE 246 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D I+F K + L L +G S A++G+I Q R I+ K GT+ +++A+ Sbjct: 247 D-FDGVIVFVRTKVATLELAEKLSARGHSCAALNGDIPQNQRENIVEKLKRGTLDILIAT 305 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+ ARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V + + AIE+ Sbjct: 306 DVVARGLDVKRISHVINYDIPLDTESYVHRIGRTGRAGRSGEAILFVTSRERHLLRAIER 365 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK-------NNPIPQKSTGFDRRKKNYSS 415 D +S+ P++ + N R N+ I QK G N + Sbjct: 366 -----------DTNSVVEPMDVPSASDVNQKRAEVFKKRINDAITQKDLGIYHDIINQTI 414 Query: 416 QKSHIPLK 423 Q++ P++ Sbjct: 415 QENDHPME 422 >gi|254502530|ref|ZP_05114681.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11] gi|222438601|gb|EEE45280.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11] Length = 430 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 222/371 (59%), Gaps = 11/371 (2%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRM 72 A+ D GY PTPIQ K IPL+L D+ G+AQTGTGKTA+F LP++ L E RA + Sbjct: 16 AIKDNGYEAPTPIQQKAIPLILDGQDLMGLAQTGTGKTAAFGLPLIERLLAEPRRAAPKG 75 Query: 73 PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132 R LIL PTREL Q+A N + K L V ++GG+ Q K++ +G D+L+ TPGR Sbjct: 76 TRALILAPTRELVNQIAKNLISFLKTTPLRVTSVVGGVSINGQVKRMSKGTDILVATPGR 135 Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192 +LD +R + + + LV+DEAD+MLD+GFI ++ I LV RQTLLFSATM ++ Sbjct: 136 LLDLVDRNAVDLGSASYLVLDEADQMLDLGFIHALRKIAGLVAKDRQTLLFSATMPKQIN 195 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ-DTMKNGIIF 251 ++++++L +P R+EV+ TA+ + + K L +L Q D M ++F Sbjct: 196 ELAQSYLTDPARVEVSPVGRTADKVRQKV--HFMDSKAKTGFLIDVLSDQPDDMS--LVF 251 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 C K L + + G + +IHGN Q R + + + G I+++VA+D+AARG+DI Sbjct: 252 CRTKHGAERLMRKMAQAGIAAGSIHGNKSQNQRERAIKELRSGAIKVLVATDVAARGIDI 311 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371 P V HV+NF++P AE Y+HRIGRT RAG G A L A E+I IEKLI ++ Sbjct: 312 PGVSHVYNFELPEVAEAYVHRIGRTARAGADGDAVALCAPEEIGLFRQIEKLIGIDIEVA 371 Query: 372 NGDLSSLNPPL 382 +G+ PPL Sbjct: 372 SGE----APPL 378 >gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533] gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533] Length = 484 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 152/388 (39%), Positives = 239/388 (61%), Gaps = 15/388 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+++ L P+++ A+ +G+ + TPIQ KTIPLVL+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+K ++ +I+EPTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 61 QNLDKQHDSIQ---AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+LDH RG + ++ ++ +V+DEAD MLDMGFI I++I QT Sbjct: 118 QTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ E F+ +P+ +++ TA I+ FV A+ ++K +L +L+ Sbjct: 178 LLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFV--RAKENEKFDILCRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ +IF K+ V L L+ +G++ IHG++ Q RM +L F++G + ++V Sbjct: 236 VQNP-DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P +Y+HRIGRTGRAG++G + T V +I ++ I Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPNSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354 Query: 361 EKLIEKKV---------DWLNGDLSSLN 379 E+L KK+ + G LS+ N Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAAN 382 >gi|307326471|ref|ZP_07605666.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger Tu 4113] gi|306887879|gb|EFN18870.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger Tu 4113] Length = 559 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 154/374 (41%), Positives = 223/374 (59%), Gaps = 13/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADL L P+++ A+ GY +PTPIQ + IP +L D+ G A TGTGKTA+F LP+L Sbjct: 10 IGFADLRLRPELLRALAGLGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALPVL 69 Query: 61 TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + + G A P L+L PTRELA Q ++ +YG++ V + GG P Q + Sbjct: 70 QRISQDGGGAE---PSALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQLRA 126 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG DV++ TPGR LDH RG L ++++E LV+DEAD MLDMGF I I P R Sbjct: 127 LERGVDVVVATPGRALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILEGTPADR 186 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCAL 234 QT+LFSATM + ++ L+ P RI++ P T + + +V AQ K A Sbjct: 187 QTVLFSATMPARIDAMARRHLRGPVRIQIEREKPAPGETPKVRQSAYVVARAQ---KPAA 243 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++L + + + I+FC + V L +L +G+ A+HG + Q R +++ + G Sbjct: 244 LGRVLDVE-SPEATIVFCRTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVRGG 302 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 T L+VA+D+AARGLDI + HV N+DVP+ E+Y+HRIGR GRAGR G A TL + Sbjct: 303 TADLLVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREH 362 Query: 355 KHIDAIEKLIEKKV 368 + + AIE+ +++ Sbjct: 363 RMLKAIERTTRRQI 376 >gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4] gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4] Length = 587 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 154/361 (42%), Positives = 224/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + +V+ A+ D GY P+PIQ TIP +L +DV G+AQTGTGKTA+F +P+L+ Sbjct: 13 FADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILSK 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + + P+ L+L PTRELA QVA+ F KY + L V + GG + Q L R Sbjct: 73 IDLTQ---KSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRR 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +G L ++ + LV+DEAD ML MGF ++ I S P +Q Sbjct: 130 GAHVVVGTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEYKQVA 189 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S+ +L +P I V + +STA I +V Q +K L ++L+ Sbjct: 190 LFSATMPGAIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQ--RKLDALTRVLEV 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K+ +L L +GFS AI+G+I Q R + + K G + ++VA Sbjct: 248 ED-FGAMIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G+A VA + + AIE Sbjct: 307 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIE 366 Query: 362 K 362 K Sbjct: 367 K 367 >gi|71280656|ref|YP_266818.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H] gi|71146396|gb|AAZ26869.1| ATP-dependent RNA helicase, DEAD box family [Colwellia psychrerythraea 34H] Length = 420 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 154/375 (41%), Positives = 227/375 (60%), Gaps = 5/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L ++ A+ ++ Y +PT IQ ++IPL+L +HDV AQTGTGKTA+F LP+L Sbjct: 5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA QV +F YG+ ++T+ + GG+ + Q +L+ Sbjct: 65 QQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+LD + ++NIE LV DEADRMLDMGF I IT +P T+QT Sbjct: 125 VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQT 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT D++ K+S+N L PK +E++ + A+ +E A ++ L L Sbjct: 185 LLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRE---LTSFLI 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 K ++F K+ +L + K G AIHG+ Q +R K L FKEG ++ ++ Sbjct: 242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV N+++P AE+Y+HRIGRT RAG G A +LV+ + + AI Sbjct: 302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAI 361 Query: 361 EKLIEKKV--DWLNG 373 E+L++ ++ WL G Sbjct: 362 EELLDIQLLQQWLPG 376 >gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296] gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296] Length = 744 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 153/376 (40%), Positives = 236/376 (62%), Gaps = 11/376 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL +V+ A+ + GY KP+PIQ +TIPL+L+ HDV G+AQTGTGKTA+F LP L+ Sbjct: 68 FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 127 Query: 63 LEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117 + + A V R + L+L PTRELA QVA+ F Y + + TV + GG P+ Q Sbjct: 128 MAE-LADVNGISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLA 186 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RGA V++ TPGR++DH +G L ++N++ LV+DEAD ML MGF ++ I P + Sbjct: 187 GLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDS 246 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +Q LFSATM + ++K+++ +L +P I V ++T+ I ++ +S K + + Sbjct: 247 KQVALFSATMPNSIRKIAQQYLNDPTEIRVKAKTTTSANISQRYMQV--MHSHKLDAMTR 304 Query: 238 LLQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ ++ +GII F KK + L+ +GF+ AI+G+I Q+ R + + ++G I Sbjct: 305 VLEVENY--DGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRI 362 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLD+ + V N+D+P+ E+Y+HRIGRTGRAGR G A V + Sbjct: 363 DILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYM 422 Query: 357 IDAIEKLIEKKVDWLN 372 + IEK +KV+ ++ Sbjct: 423 LRQIEKATRQKVEPMH 438 >gi|149909181|ref|ZP_01897838.1| ATP-dependent RNA helicase [Moritella sp. PE36] gi|149807705|gb|EDM67651.1| ATP-dependent RNA helicase [Moritella sp. PE36] Length = 432 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 228/370 (61%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ GL+ + AV + GY +PTPIQ K IP +L ++ AQTGTGKTASFVLP+L Sbjct: 29 MPFSKFGLNKLITQAVAELGYEQPTPIQQKAIPAILSGKNLIAAAQTGTGKTASFVLPLL 88 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + K R + R LIL PTRELA QVA+N E+YGK+ +LT + GG+ + Q ++L Sbjct: 89 QMFSHKHTLRAKRIRALILTPTRELAIQVAENVEQYGKHLHLTSMAMYGGVDMDPQKQRL 148 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD ++ L + +E+LVIDEADRMLDMGF+ I I +P RQ Sbjct: 149 IEGVDILVATPGRLLDMAHQRALHFDELEVLVIDEADRMLDMGFVNDINKIIERLPQERQ 208 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++ +++ + I + ++TA I+ T K ALL ++ Sbjct: 209 NLLFSATLSNKVRFLAKTAINYALEISIEPENTTAPEIDQWL--TVVDKDVKSALLSHMI 266 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D K +IF K+ L LEK+G + H Q R ++L+ FK G + + Sbjct: 267 IEND-WKQALIFIETKRGAAKLVSQLEKRGIKAESFHSGRSQAMREQLLAEFKAGELSFL 325 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +A+RG+DI D+ V N+D+P +Y+HRIGRTGRAG G+A + V+++D +++ A Sbjct: 326 VATGVASRGIDIDDLDRVVNYDLPEEQADYVHRIGRTGRAGASGEAISFVSRDDFRNLCA 385 Query: 360 IEKLIEKKVD 369 IE+L++ ++ Sbjct: 386 IEQLLDHVIE 395 >gi|254229148|ref|ZP_04922567.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] gi|262395499|ref|YP_003287352.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|151938233|gb|EDN57072.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] gi|262339093|gb|ACY52887.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] Length = 419 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/375 (39%), Positives = 237/375 (63%), Gaps = 6/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++FADLG+ K++ + + V PTP+Q K+IP VL+ ++ AQTGTGKTA+F LP++ Sbjct: 3 VNFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPII 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ + P+ L+L PTRELA QV DN +Y L + + GG Q +KLE Sbjct: 63 QTVQQKKLN-GTPQALVLVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQKRKLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+LI TPGR+LDH G + ++ +LV+DEADRMLDMGF P +Q I +P +Q Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++ ++ +++P +EV+ ++TAET++ +K LL L+ Sbjct: 182 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPV--DKKRKRELLAYLIG 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++F K+ L L+ G +I+G+ Q +R + L FK+G ++ ++ Sbjct: 240 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++ + AI Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAI 358 Query: 361 EKLIEKKV--DWLNG 373 E L+++++ +WL G Sbjct: 359 ENLLDQRLPQEWLAG 373 >gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep ecotype'] gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep ecotype'] Length = 480 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 155/367 (42%), Positives = 225/367 (61%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ A+ G+ P+PIQ K IP VL+ DV AQTGTGKTA F LP+L Sbjct: 1 MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G + R LIL PTRELAAQV ++ + + L A++ GG+ Q KL Sbjct: 61 QRLMSGPKVSANNVRALILTPTRELAAQVEESICAFSEFLPLKTAVVFGGVGINPQMIKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DVLI TPGR+LD + + + + +E+LV+DEADRMLDMGFI I+ + L+P RQ Sbjct: 121 RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPEDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT +DE+ +++ +NP I ++T + +E V T + K AL+ L Sbjct: 181 SLLFSATFSDEITTLAKTITRNPVSISTAPANTTVDAVEQHLV-TIDKSKKTTALI--CL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++F K + L + AIHGN Q +R K L++FK G I+++ Sbjct: 238 IKQQKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGDIKVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI ++ V N D+PN A +Y+HRIGRTGRAG G+A++ V+ E+++++ Sbjct: 298 VATDIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVSAEELQNLKD 357 Query: 360 IEKLIEK 366 IE LI+K Sbjct: 358 IETLIQK 364 >gi|239996759|ref|ZP_04717283.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126] Length = 596 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/374 (40%), Positives = 235/374 (62%), Gaps = 11/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L ++ A+ GY KP+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML Sbjct: 7 MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ++ R P+ L+L PTRELA QVA+ F+ Y + + V + GG ++ Q ++L Sbjct: 67 ANID---PEERKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGRI+DH R L ++ ++ LV+DEAD ML MGFI ++ I S P RQ Sbjct: 124 KRGVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237 T LFSATM ++K+++ +L++PK +++ + STA TI +C +A + K L + Sbjct: 184 TALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPH----HKLEALTR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ + IIF K V L L +G+ V ++G+I Q +R + + K+G I Sbjct: 240 IMEVE-VFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKID 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARGLD+ V HV N+D+P +E+Y+HRIGRTGRAGR G A ++ + + + Sbjct: 299 ILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLL 358 Query: 358 DAIEKLIEKKVDWL 371 +IEK ++ ++ + Sbjct: 359 FSIEKTTKQPIEAM 372 >gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 423 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 155/406 (38%), Positives = 246/406 (60%), Gaps = 14/406 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS ++ + + + PT +Q + IPLVL+ DV AQTGTGKTA+F LP++ Sbjct: 8 FNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQR 67 Query: 63 LEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + V ++ R L+L PTRELA QV DN Y K ++ V + GG+ + Q + Sbjct: 68 LIETKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTEN 127 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L GAD+L+ TPGR++DH +++++ E+LV+DEADRMLDMGF+P I+ I S + R Sbjct: 128 LRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDEADRMLDMGFMPDIKRILSRMNEVR 187 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT ++++ ++ +Q+P I+V +STA+T+ S+K LL L Sbjct: 188 QTLFFSATFDNKIKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPV--DKSRKSELLAYL 245 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S++ + ++F K+ L L+ G +I+G+ Q +R K L +FK G ++ Sbjct: 246 IGSKN-WQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRA 304 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI + V N+D+P +AE+Y+HRIGRTGRAG G A +L+++++ + Sbjct: 305 LIATDVAARGIDIQQLEQVVNYDMPFKAEDYVHRIGRTGRAGNSGLAISLMSQDEAYLLG 364 Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 IE+L++ ++ +WL G P LEK D+A R + +K Sbjct: 365 DIERLLDTRLPQEWLEG----FEPSLEK-DLAPDRGGRSKSRSSEK 405 >gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01] gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01] Length = 423 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 156/406 (38%), Positives = 245/406 (60%), Gaps = 14/406 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS +++ + + + PT +Q + IPLVL+ DV AQTGTGKTA+F LP++ Sbjct: 8 FNQLGLSEQLLTTLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQR 67 Query: 63 LEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + V ++ R L+L PTRELA QV DN Y K ++ V + GG+ + Q Sbjct: 68 LIETKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTDN 127 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L GAD+L+ TPGR++DH ++++ E+LV+DEADRMLDMGF+P I+ I S + R Sbjct: 128 LRGGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNDVR 187 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT ++++ ++ +Q+P I+V +STA+T+ S+K LL L Sbjct: 188 QTLFFSATFDNKIKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPV--DKSRKSELLAYL 245 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S++ + ++F K+ L L+ G +I+G+ Q +R K L +FK G ++ Sbjct: 246 IGSKN-WQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRA 304 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI + V N+D+P +AE+Y+HRIGRTGRAG G A +L+++++ + Sbjct: 305 LIATDVAARGIDIQQLEQVVNYDMPFKAEDYVHRIGRTGRAGNTGLAISLMSQDEAYLLG 364 Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 IE+L++ ++ +WL G P LEK DIA R + +K Sbjct: 365 DIERLLDTRLPQEWLEG----FEPSLEK-DIAPDRGGRSKSRSSEK 405 >gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str. Challis substr. CH1] gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus gordonii str. Challis substr. CH1] Length = 523 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 234/372 (62%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 EKIDTDNPAVQ---ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++ IE L++DEAD ML+MGF+ I++I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDQIETLILDEADEMLNMGFLEDIESIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T E ++ ++ + ++K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYI--RVKENEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354 Query: 361 EKLIEKKVDWLN 372 E L +K++ L Sbjct: 355 ENLTKKRMKGLK 366 >gi|16611843|gb|AAL27386.1|AF426171_17 RhlE [Yersinia pestis] Length = 421 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|51595558|ref|YP_069749.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis IP 32953] gi|108807091|ref|YP_651007.1| ATP-dependent RNA helicase RhlE [Yersinia pestis Antiqua] gi|108812974|ref|YP_648741.1| ATP-dependent RNA helicase RhlE [Yersinia pestis Nepal516] gi|153950333|ref|YP_001401773.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis IP 31758] gi|166211637|ref|ZP_02237672.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. B42003004] gi|167400295|ref|ZP_02305808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167423922|ref|ZP_02315675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025120|ref|YP_001721625.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis YPIII] gi|186894614|ref|YP_001871726.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis PB1/+] gi|229894068|ref|ZP_04509254.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A] gi|229903411|ref|ZP_04518524.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|294503186|ref|YP_003567248.1| DEAD/DEAH box helicase [Yersinia pestis Z176003] gi|51588840|emb|CAH20454.1| putative ATP-dependent RNA helicase rhlE [Yersinia pseudotuberculosis IP 32953] gi|108776622|gb|ABG19141.1| DEAD/DEAH box helicase [Yersinia pestis Nepal516] gi|108779004|gb|ABG13062.1| DEAD/DEAH box helicase [Yersinia pestis Antiqua] gi|152961828|gb|ABS49289.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pseudotuberculosis IP 31758] gi|166207408|gb|EDR51888.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. B42003004] gi|167050244|gb|EDR61652.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056771|gb|EDR66534.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751654|gb|ACA69172.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis YPIII] gi|186697640|gb|ACC88269.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis PB1/+] gi|229679181|gb|EEO75284.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|229703953|gb|EEO90966.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A] gi|262361223|gb|ACY57944.1| DEAD/DEAH box helicase [Yersinia pestis D106004] gi|294353645|gb|ADE63986.1| DEAD/DEAH box helicase [Yersinia pestis Z176003] Length = 451 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|108759595|ref|YP_632093.1| RNA helicase DeaD [Myxococcus xanthus DK 1622] gi|108463475|gb|ABF88660.1| RNA helicase DeaD [Myxococcus xanthus DK 1622] Length = 602 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 216/368 (58%), Gaps = 2/368 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL P +V A+ GY +PTPIQ +P +L D+ GIA TGTGKTA+F LP+L Sbjct: 46 FDSLGLKPALVEALSALGYEEPTPIQAAALPPLLAGKDLLGIAATGTGKTAAFALPLLNH 105 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E G R L+L PTRELA QV++ +YG+ ++V L GG Q + L+RG Sbjct: 106 VEPGACRPNTTSALVLVPTRELAMQVSEAIHRYGQKLGISVLPLYGGQVIGQQLRVLKRG 165 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH RG L ++++ ++V+DEAD MLDMGF ++ I S P RQT L Sbjct: 166 VDVVVATPGRALDHLRRGTLQLDDVRVVVLDEADEMLDMGFAEDLEAILSGTPEDRQTAL 225 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSAT+ + ++E L P R+++ I Y + K A L +LL Sbjct: 226 FSATLPPRIASIAERHLHEPVRVKIAREKVEQGEIPRVRQTAYVVPRAFKIATLGRLLDV 285 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIFC + V +L SL +G+ A+HG + Q R +++ K L+VA Sbjct: 286 ESPTA-AIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQGTDLLVA 344 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDIP + HV NFDVPN E Y+HRIGRTGRAGR G A TLV + + + IE Sbjct: 345 TDVAARGLDIPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIE 404 Query: 362 KLIEKKVD 369 ++ ++++ Sbjct: 405 RVTGQRIE 412 >gi|269795126|ref|YP_003314581.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542] gi|269097311|gb|ACZ21747.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542] Length = 614 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL +++ AVLD G+ P+ IQ K IP +L +D+ G+AQTGTGKTA+F LPML Sbjct: 30 ITFADLGLPAELLSAVLDLGFTVPSTIQEKAIPALLAGNDITGVAQTGTGKTAAFGLPML 89 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ +R + L+L PTRELA QVA+ E + K+ + V + GG P+ Q + L Sbjct: 90 AAVDP---ELRRTQALVLAPTRELAMQVAEAIETFAKHLPGIEVVPVYGGSPYPPQARAL 146 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA +++ TPGR++DH RG L + +I LV+DEAD ML MGF ++ I P RQ Sbjct: 147 SRGAQIVVGTPGRVIDHLERGTLKLGDIRFLVLDEADEMLRMGFAEDVEKIFGAAPTERQ 206 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM ++++V+++ ++ P I V+ SST ++ + + K L ++L Sbjct: 207 VALFSATMPPQIRRVAQHHMRQPVEIAVSRQSSTVTSVTQQYA--VVPFRHKVGSLTRVL 264 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D I+FC + + +L ++G S I G++ Q+ R KI+ + G + ++ Sbjct: 265 ATSDA-DAAIVFCRTRGAAEEVGSALIERGISAATISGDVAQKDREKIVERLRAGALDVL 323 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ +G V NFD+P E Y+HRIGRTGRAGR G A + V + + Sbjct: 324 VATDVAARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRTGVALSFVTPNERGRLKQ 383 Query: 360 IEKLIEKKV 368 IE+ I +++ Sbjct: 384 IERTIRQQL 392 >gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16] gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16] Length = 537 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/363 (41%), Positives = 226/363 (62%), Gaps = 7/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D +S +V A+ D G+ +P+PIQ K IP +L DV G AQTGTGKTA+F +P++ Sbjct: 4 FTDFDISDQVKQAIQDMGFEEPSPIQEKAIPAILTGGDVIGQAQTGTGKTAAFGIPVVDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + R + LIL PTRELA QV+ +K + + + GG Q K L +G Sbjct: 64 VTEER----YIQALILTPTRELAIQVSGELQKLSAHKRIRTLPIYGGQSIGHQIKALRQG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH RG L +N++ +V+DEAD MLDMGF+ I+ I V RQTLL Sbjct: 120 VQVVIGTPGRMLDHLRRGTLKLNSVHTVVLDEADEMLDMGFVDDIEAILKEVNQVRQTLL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++K+S ++ +PK + +N TA +I + + K L +++ S Sbjct: 180 FSATMPPAIRKLSRKYMNDPKTVTINKGEVTAPSINQVYYKVLER--NKIDSLCRIIDSD 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++ GI+FC KK V L +L+ +G+ V +HG++ Q R ++ F++ +I+ ++A+ Sbjct: 238 D-VELGILFCRTKKGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKFRDSSIEFLIAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+D+ +V HV N+D+P E+Y+HRIGRTGRAGR G A TLV ++KH+ +IEK Sbjct: 297 DVAARGIDVENVTHVINYDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMKHLRSIEK 356 Query: 363 LIE 365 I+ Sbjct: 357 EIK 359 >gi|238794074|ref|ZP_04637691.1| ATP-dependent RNA helicase rhlE [Yersinia intermedia ATCC 29909] gi|238726579|gb|EEQ18116.1| ATP-dependent RNA helicase rhlE [Yersinia intermedia ATCC 29909] Length = 451 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLSLDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 623 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/367 (40%), Positives = 229/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL+ +V A+ D GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLTESLVRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNS 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ P+ L+L PTRELA QVA+ F Y K L V + GG + Q L R Sbjct: 68 IDPN---TNAPQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQLNALRR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH RG L ++ ++ +V+DEAD ML MGFI I+ I P TRQ Sbjct: 125 GPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ +L NP +++ +ST ETIE FV +Q++K AL++ +L+ Sbjct: 185 LFSATMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQV-SQHNKLEALVR-VLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 243 EKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIEQLKRGQLDIIIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361 Query: 362 KLIEKKV 368 + ++ Sbjct: 362 RATNSRI 368 >gi|238788773|ref|ZP_04632564.1| ATP-dependent RNA helicase rhlE [Yersinia frederiksenii ATCC 33641] gi|238723078|gb|EEQ14727.1| ATP-dependent RNA helicase rhlE [Yersinia frederiksenii ATCC 33641] Length = 451 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLSQNQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep ecotype'] Length = 589 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/374 (40%), Positives = 236/374 (63%), Gaps = 11/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L ++ A+ GY KP+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML Sbjct: 7 MTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L+L PTRELA QVA+ F+ Y + + V + GG ++ Q ++L Sbjct: 67 ANIDPEQ---RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGRI+DH R L ++ ++ LV+DEAD ML MGFI ++ I S P RQ Sbjct: 124 KRGVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237 T LFSATM ++K+++ +L++PK +++ + STA TI +C +A + K L + Sbjct: 184 TALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPH----HKLEALTR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ + IIF K V L L +G+ V ++G+I Q +R + + K+G I Sbjct: 240 IMEVE-VFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKID 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARGLD+ V HV N+D+P +E+Y+HRIGRTGRAGR G A ++ + + + Sbjct: 299 ILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLL 358 Query: 358 DAIEKLIEKKVDWL 371 +IEK ++ ++ + Sbjct: 359 FSIEKTTKQPIEAM 372 >gi|300692069|ref|YP_003753064.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant RNA helicase(C-terminal) (rhlE-like) [Ralstonia solanacearum PSI07] gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant RNA helicase(C-terminal) (rhlE-like) [Ralstonia solanacearum PSI07] Length = 614 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 152/385 (39%), Positives = 232/385 (60%), Gaps = 23/385 (5%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LGL ++V A+ + Y +PTP+Q + IP L D+ +QTG+GKTA+F+LP + + + Sbjct: 35 LGLDERIVRALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISE 94 Query: 66 G-------------RARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV-A 104 R + R PR L+L PTRELA QV +YG++ V A Sbjct: 95 QPEPQRPRADGPPQRVKGRRPRPSPAKPSLLVLTPTRELALQVTTAASQYGRHLRRIVCA 154 Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164 ++GG+P+ Q L R D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214 Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224 I+ I P TRQ L+FSATM +++++E +++P+RIE+ IE T Sbjct: 215 DDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIAAAKIDQSNIEERLHFT 274 Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284 S K LL LL+ T+K I+F K++ +L L + GFS A+HG++ Q +R Sbjct: 275 -DDLSHKQQLLDHLLRDA-TLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGAR 332 Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344 + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G Sbjct: 333 NRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGI 392 Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVD 369 A LV D IE+ +++++D Sbjct: 393 AINLVNHGDTFQWRRIERFVDRRID 417 >gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803] gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803] Length = 399 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/345 (43%), Positives = 216/345 (62%), Gaps = 4/345 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG-RARVRMPRTLIL 78 GY P+PIQ + IP V+ DV AQTGTGKTA F LP+L L G RA R L+L Sbjct: 8 GYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLRHGKRAGRAQIRALVL 67 Query: 79 EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELAAQV +N + Y ++ L ++ GG+ Q +L G D+L+ TPGR+LD Sbjct: 68 TPTRELAAQVLENVKAYSRHLPLRSDVVFGGVKANPQIDRLRGGVDLLVATPGRLLDLHQ 127 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 +G L + +E LV+DEADRMLDMGFI I+ + L+P RQTLLFSAT + ++K++ Sbjct: 128 QGALRFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPAKRQTLLFSATFSAPIRKLASGL 187 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 L +P ++V + TA ++E V ++K LL L+++ + + ++F K Sbjct: 188 LHDPVHLQVTPENQTARSVEQ--VVHPCDMARKSDLLSHLIRTGE-WRQVLVFSRTKHGA 244 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 + L K+G + AIHGN Q +R + L FK+G+++++VA+D+AARG+DI + HV Sbjct: 245 NRVADRLNKEGLAAAAIHGNKSQGARTRALQGFKQGSVRVLVATDIAARGIDIQQLPHVV 304 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 N D+PN AE+Y+HRIGRTGRAG G A +LVA E+ + AIE+L Sbjct: 305 NLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIERL 349 >gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521] gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521] gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E BL5262] Length = 524 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 153/369 (41%), Positives = 225/369 (60%), Gaps = 12/369 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL +V A+ D G+ KP+ IQ ++IP+ L D+ G AQTGTGKTA++ LP+LT Sbjct: 6 FATLGLKESIVRAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPILTK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + + LIL PTRELA QV D + K + + GG + Q + L +G Sbjct: 66 MSTNKG----IKALILAPTRELAVQVKDEMNRLSKYEKAEILAVYGGDSIDRQIRALRKG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR+LD R L ++++E LV+DEAD ML+MGFI I++I S P RQTLL Sbjct: 122 VDVVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLNMGFIDDIESILSHTPEERQTLL 181 Query: 183 FSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQLL 239 FSATM D + K+++ +++ + K + V S T IE + ++ + C LL Sbjct: 182 FSATMPDPIAKLAKRYMKPDAKLVSVKKSSLTVSKIEQSYFMINNKHRLEALCRLLDL-- 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + IIFC K+ V L L+ +G+ V +HG++ Q R+ LS FKEGT+ L+ Sbjct: 240 ---DNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLSKFKEGTLNLL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ V HVFN+D+P E+Y+HRIGRTGRA R G A++LV +D + Sbjct: 297 IATDVAARGIDVDGVTHVFNYDLPQDVESYVHRIGRTGRANREGTAYSLVTPKDFSMLKQ 356 Query: 360 IEKLIEKKV 368 I+K+ + + Sbjct: 357 IQKVTKSAI 365 >gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp. FB24] gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24] Length = 747 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/375 (40%), Positives = 230/375 (61%), Gaps = 9/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ +V+ A+ D GY KP+PIQ TIPL+L+ DV G+AQTGTGKTA+F +P L+ Sbjct: 92 FADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 151 Query: 63 LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 L + R + L+L PTRELA QVA+ F Y K+ + TV + GG + Q Sbjct: 152 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 211 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGA V++ TPGR++DH ++G L ++ ++ LV+DEAD ML MGF ++ I P R Sbjct: 212 LRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDR 271 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM +++++S+ +L NP I V + ++T ++ + K L ++ Sbjct: 272 QVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPH--KLDALTRI 329 Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ ++ +G+I F K +L L+ +GF AI+G+I Q+ R + + KEG I Sbjct: 330 LEVEEF--DGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRID 387 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A + + + Sbjct: 388 ILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLL 447 Query: 358 DAIEKLIEKKVDWLN 372 +IEK + V+ ++ Sbjct: 448 RSIEKATRQPVEQMH 462 >gi|107102390|ref|ZP_01366308.1| hypothetical protein PaerPA_01003452 [Pseudomonas aeruginosa PACS2] gi|296388673|ref|ZP_06878148.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1] Length = 556 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 236/369 (63%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ P V+ A++ GY +P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LP+L+ Sbjct: 8 FAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R R P+ L+L PTRELA QVA E Y K + V + GG P Q K L + Sbjct: 68 IDPSR---REPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGR+ DH R + L+ ++ LV+DEAD ML +GF+ ++ I +P +RQT+ Sbjct: 125 GAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ PK +++ + T IE + +A +K +Q+LL+ Sbjct: 185 LFSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHA--DQKAGSIQRLLEV 242 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + I F K+ ++ LE+QG+ A++G++ Q R +++ + K+G++ ++ Sbjct: 243 EQFDAL---IAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIV 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+P + HV N D+P E+Y+HRIGRTGRAGR G+A LV + + + Sbjct: 300 IATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359 Query: 360 IEKLIEKKV 368 IE++ +KV Sbjct: 360 IERVTGQKV 368 >gi|294789414|ref|ZP_06754651.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella muelleri ATCC 29453] gi|294482627|gb|EFG30317.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella muelleri ATCC 29453] Length = 471 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++ A+ + GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 26 FSQLGLGQEITSALAEQGYETPTPIQATAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 85 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 86 LKRYANASTSPAMHPVRMLVLTPTRELADQIDQNTQNYIKNLPLRHTVLFGGVNMDKQTT 145 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 146 DLRTGCEIVVATVGRLLDHIKQKNINLNKVEIVVLDEADRMLDMGFIDDIRQIMQMLPRP 205 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT ++K++++F+ +P+ +EV ++T +E +A A Y K+ L + Sbjct: 206 RQTLLFSATFAPAIRKLAQDFMNSPETVEVAAQNATNANVEQHVIAVDA-YRKRELLERL 264 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ Q M I+FC K++ + L ++G S AIHG+ Q++R+ +LS FK G ++ Sbjct: 265 IVDLQ--MPQVIVFCKTKQSADQVARDLVRRGLSANAIHGDKSQQTRLDVLSQFKSGELR 322 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P +AE+Y+HRIGRTGRAG G A +++ + K Sbjct: 323 VLVATDVAARGLDIAELPFVINYELPTQAEDYVHRIGRTGRAGADGVAISMMDDNEQKMY 382 Query: 358 DAIEKLIEKKV 368 +I +LI +++ Sbjct: 383 FSINELIGQEL 393 >gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21] gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21] Length = 455 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 156/375 (41%), Positives = 222/375 (59%), Gaps = 8/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS V+ A+ GY PTPIQ + IP VL+ D+ GIAQTGTGKTA+F+LP + Sbjct: 4 FTDLGLSQPVLQALDIKGYTTPTPIQAQAIPPVLEGRDLMGIAQTGTGKTAAFMLPSIDR 63 Query: 63 LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L ++ + R LIL PTRELA Q+AD+ + YG L V ++GG KL Sbjct: 64 LRDADKQSPFKSCRMLILAPTRELAGQIADSAKDYGALAGLKVHSIVGGTSVNKDRNKLH 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD ++ ++ +EIL++DEAD+MLD+GFI ++ I+ LVP RQT Sbjct: 124 RGTDILVATPGRLLDLIDQKAFTLDKVEILILDEADQMLDLGFIHALRKISELVPDDRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239 L FSATM ++Q++ + +NP ++ V S+TAE I+ Q +K LL+ +L Sbjct: 184 LFFSATMPKQIQELVGKYCRNPVKVSVTPESTTAERIDQYLF--MVQQDEKQTLLEMILS 241 Query: 240 ---QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q + +IF K + L + G AIHGN Q R + L FK Sbjct: 242 ERHQVPGKFERVLIFARTKHGCDRIVKKLGQSGIPANAIHGNKSQPQRERALDEFKRAKT 301 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DIP V HV N+++PN E Y+HRIGRT RAGR G A A+++ + Sbjct: 302 PILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGRDGVAIAFCAEDERDY 361 Query: 357 IDAIEKLIEKKVDWL 371 + I K + + + L Sbjct: 362 LKDIRKKTDAEFERL 376 >gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725] gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726] gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725] gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726] Length = 623 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/385 (38%), Positives = 237/385 (61%), Gaps = 13/385 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL K++ AV G+ P+PIQ +TIP++++ DV G+AQTGTGKTA+F LP+L+ Sbjct: 57 FEHLGLPDKILQAVAKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 116 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + R P+ L+L PTRELA QVAD F+ + + + V + GG + Q L R Sbjct: 117 LD---PQARHPQALVLAPTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSGLRR 173 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +G L ++ ++ LV+DEAD ML+MGF ++ I P +Q Sbjct: 174 GAQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPDRKQVA 233 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240 LFSATM + ++++S+ +L NP + V + T + I+ F+ + K ++L+ Sbjct: 234 LFSATMPNAIRRLSKQYLHNPAEVTVKSERRTNDNIKQRFL--LIPHRAKMDAFTRILEV 291 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + I+FC K + +L +G+S AI+G+I Q R + + K+G + ++ Sbjct: 292 ITYDAI---IVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDIL 348 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV NFD+PN E+Y+HRIGRTGRAGR G+A V + + + + Sbjct: 349 VATDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS 408 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384 IE++ +++ + DL S++ EK Sbjct: 409 IERVTNARLEEM--DLPSVDEVNEK 431 >gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1] gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1] Length = 465 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 154/369 (41%), Positives = 231/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +++ A+ G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F +P++ Sbjct: 4 FYELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLI-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK + L++ PTRELA QV++ K G + V + GG Q + L++ Sbjct: 62 -EKVDVTNEAIQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIGRQIRALKKR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGRI+DH NR L + N+ +V+DEAD ML+MGFI I+ I S VP RQTLL Sbjct: 121 PHIIVGTPGRIIDHINRKTLHLENVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + +++++E F+ P+ ++V T I+ ++ Q KK +L +LL Q Sbjct: 181 FSATMPEPIRRIAERFMNEPQIVKVKAKEMTVPNIQQYYLEV--QEKKKFDILTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G++ IHG++ Q R+ +L FKEG+I+++VA+ Sbjct: 239 -APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V +I + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIER 357 Query: 363 LIEKKVDWL 371 ++K++ + Sbjct: 358 TTKRKMERM 366 >gi|50119665|ref|YP_048832.1| ATP-dependent RNA helicase DeaD [Pectobacterium atrosepticum SCRI1043] gi|49610191|emb|CAG73633.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 637 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 238/377 (63%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L + ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L Sbjct: 68 L---KPELKAPQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGGQRYDVQLRALRG 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P T QT Sbjct: 125 GAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+++P+ + + + +T I + Q +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTV--QGMRKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++++ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLAIPEVELPNAEL 378 >gi|320540183|ref|ZP_08039838.1| putative ATP-dependent RNA helicase [Serratia symbiotica str. Tucson] gi|320029849|gb|EFW11873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str. Tucson] Length = 623 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/379 (38%), Positives = 239/379 (63%), Gaps = 10/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 7 ISFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ A ++ P+ L+L PTRELA QVA+ + K+ +++ V L GG ++ Q + L Sbjct: 67 HNLQ---ADLKAPQILVLAPTRELAVQVAEAMTDFSKHMHSVNVVALYGGQRYDVQLRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P Q Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+++P+ + + + +T I + + +K L + L Sbjct: 184 TALFSATMPEAIRRITRRFMKDPQEVHIQSSITTRPDISQSYWTVHGM--RKNEALVRFL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + +LE+ G+S A++G+++Q R + L K+G + ++ Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQALREQTLERLKDGRLDIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356 +A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++ Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360 Query: 357 IDAIEKLIEKKVDWLNGDL 375 I+ KL +V+ N +L Sbjct: 361 IERTMKLTIPEVELPNAEL 379 >gi|220918247|ref|YP_002493551.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956101|gb|ACL66485.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 488 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 153/401 (38%), Positives = 235/401 (58%), Gaps = 17/401 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LS K + A+ AG+ PTPIQ + IP L DV G A TGTGKTA+F+LP++ Sbjct: 17 FADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIER 76 Query: 63 LEKGRARVR----------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L G + PR L+L PTRELA Q+A +++G+ ++ AL+IGG+ Sbjct: 77 LGGGAPAPKDRPAAAHGKPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVGM 136 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 AQ+ L R +V++ TPGR++DH +G ++ +E+LV+DEADRMLDMGF P ++ I + Sbjct: 137 GAQSAAL-RDHEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILA 195 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 VP RQTLLFSATM E+ + + L++P R+EV + AE E + +K Sbjct: 196 RVPKVRQTLLFSATMAGEVAEFARAHLRDPVRVEVARSGTLAERAEQRVF--LPEQREKL 253 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL LL+ D + ++F K+ + +L++ G V IH + Q R L F+ Sbjct: 254 PLLMALLEEDDL--STLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFR 311 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 +G +++VA+D+AARG+D+ ++GHV NFD+P+ E+Y+HR+GRT R G+A + E Sbjct: 312 DGQYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPE 371 Query: 353 DIKHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHN 391 ++ + IE+L + + + ++ L++ D AQ N Sbjct: 372 ELDLLRDIERLTRAPIPRAEVPREHATFQAELQRADAAQAN 412 >gi|290473453|ref|YP_003466320.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004] gi|289172753|emb|CBJ79524.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004] Length = 662 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 241/381 (63%), Gaps = 10/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 7 ISFADLGLSAPILAALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ A ++ P+ L+L PTRELA QVA+ ++ K ++ V L GG ++ Q + L Sbjct: 67 HNID---AELKAPQILVLAPTRELAVQVAEACSEFSKQMRSVNVVALYGGQRYDVQLRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G V++ TPGR+LDH RG L ++N++ LV+DEAD ML MGFI ++NI S +P Q Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+ +P+ + + + +T I + + + +K L + L Sbjct: 184 TALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWSVHG--VRKNEALVRFL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + +LE+ G++ A++G+++Q R + L K+G + ++ Sbjct: 242 ETED-FDATIIFVRTKNATLEVAETLERHGYNSAALNGDMNQALREQTLERLKDGRLDIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356 +A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++ Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360 Query: 357 IDAIEKLIEKKVDWLNGDLSS 377 ++ KL +V+ N +L S Sbjct: 361 VERTMKLTIPEVELPNAELLS 381 >gi|317046747|ref|YP_004114395.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp. At-9b] gi|316948364|gb|ADU67839.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b] Length = 640 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 239/377 (63%), Gaps = 11/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLNESILSALNDMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 IDPN---LKAPQILVLAPTRELAVQVAEAATEFSKHMRGVNVLALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSY---WTAYGRKTDALVRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 361 RTMKLTIPEVELPNAEL 377 >gi|325104041|ref|YP_004273695.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] gi|324972889|gb|ADY51873.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] Length = 451 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 154/369 (41%), Positives = 229/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L + A+ Y PTPIQ + IPL+LQR D+ G AQTGTGKTA+F +P+L + Sbjct: 4 FETLNLIQPIQKALKALNYQTPTPIQAQAIPLILQRKDLLGCAQTGTGKTAAFAIPILQL 63 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L++ + T LI+ PTRELA Q+ D+F YGKN L A++ GG+ ++Q L Sbjct: 64 LDEDLKKNHQKNTIKALIVTPTRELAIQIGDSFSDYGKNLRLKHAVIFGGVNQKSQVDAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G D+L+ TPGR+LD ++ L + +I + V+DEADRMLDMGFI ++ I +++P RQ Sbjct: 124 QKGVDILVATPGRLLDLMHQKHLSLKHINLFVLDEADRMLDMGFINDVKKIIAVLPQHRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +L FSATM +QK+SE L++P ++EV SSTA+TI + + K LL +L Sbjct: 184 SLFFSATMPPVIQKLSEEILKSPVKVEVTPVSSTADTINQTVF--FVDKNNKNDLLLHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q + + ++F K + +L KQ AIHGN Q +R + L +FK I+++ Sbjct: 242 KDQ-LLDSVLVFTRTKHGADRVVKTLAKQHIKSAAIHGNKSQNARQRALDDFKTKAIRVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + +V N+++PN E Y+HRIGR+GRAG G A + ++ + Sbjct: 301 VATDIAARGIDIDSLKYVINYEIPNIPETYVHRIGRSGRAGAEGIAISFCDVDEKPFLKD 360 Query: 360 IEKLIEKKV 368 IEK+I K V Sbjct: 361 IEKIIGKSV 369 >gi|311693479|gb|ADP96352.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15] Length = 507 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 166/462 (35%), Positives = 254/462 (54%), Gaps = 31/462 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA+LGL P V+ AV GY P+PIQ + IP +L + + G+AQTGTGKTA+F LP+L Sbjct: 4 LSFAELGLDPAVLEAVSAVGYETPSPIQAQAIPALLAGNHLLGVAQTGTGKTAAFALPLL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ A V P+ L+L PTRELA QVA+ F Y + N V + GG F Q K L Sbjct: 64 SRID---ASVTDPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFYPQIKGL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA V++ TPGR+LDH +G L +++++ LV+DEAD ML MGFI ++ I + P Q Sbjct: 121 RRGAQVIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPENCQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++KV++ +L+N + + + + T E I + YA+ +K L ++L Sbjct: 181 RALFSATMPPQIKKVAQTYLRNATEVRIESETRTVERISQFVLPVYAE--RKLDALTRIL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + IIF K L L +G +V + G+++QR R + + + K G ++ Sbjct: 239 EVE-PIDAAIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDII 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + HV N+DVP E YIHR+GRTGRAGR GKA LV Sbjct: 298 IATDVAARGLDVSRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTP-------- 349 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 ++ WL + N P+E ++ +K + F+ + ++ K Sbjct: 350 ------RERSWLRTLERATNSPMEAYELPSPVELKK-----MREQQFESQLLGFAEDK-- 396 Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKL 461 K ++ +S L + + ND D G + +M G L Sbjct: 397 ---KLAKAMSLLDEIAERNDMDMAMVAGALACWMEAAQPGSL 435 >gi|311745694|ref|ZP_07719479.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1] gi|126575136|gb|EAZ79486.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1] Length = 453 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 154/369 (41%), Positives = 229/369 (62%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F L+ +++ A+ +AGY PT IQ K IPL L HDV GIAQTGTGKTA++VLP+L Sbjct: 6 LGFEAFKLNRQLLEAIGEAGYAHPTAIQEKAIPLALAGHDVLGIAQTGTGKTAAYVLPIL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ A+ R LIL PTREL Q+ + ++ +L V L GG+ + Q + ++ Sbjct: 66 --MKVKYAQGLHARALILAPTRELVMQIEEVTKQLATYTDLRVVSLYGGLGPKTQIETIQ 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D++I TPGR LD + + L ++ +V+DEAD+M+DMGF+P I++I ++P RQ Sbjct: 124 AGVDIIISTPGRFLDIYRKNMLYTKALKTMVLDEADKMMDMGFMPQIRSILEVIPVKRQN 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++K++ FL+ P+R+EV ++TAETI+ K LL +LL+ Sbjct: 184 LLFSATFGTRIEKLAHEFLEFPERVEVTPQATTAETIDQVMYFV-PNIKTKINLLAKLLE 242 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGF-SVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + IIF +KN + H LE + F V IH N Q +R+ + +FK G ++++ Sbjct: 243 -EEAVNRAIIFTRSRKNAEEVFHFLENRHFGEVRVIHANKGQNTRINSMEDFKGGEVRIL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDI V HV NFD+P E+Y+HRIGRTGRA GKA + V + H + Sbjct: 302 VATDVASRGLDITMVSHVINFDIPLIYEDYVHRIGRTGRAEHEGKAISFVNPAEAYHFEK 361 Query: 360 IEKLIEKKV 368 IE++I KV Sbjct: 362 IEEIIRMKV 370 >gi|215426565|ref|ZP_03424484.1| hypothetical protein MtubT9_09292 [Mycobacterium tuberculosis T92] gi|219557147|ref|ZP_03536223.1| hypothetical protein MtubT1_07530 [Mycobacterium tuberculosis T17] gi|260200303|ref|ZP_05767794.1| hypothetical protein MtubT4_09273 [Mycobacterium tuberculosis T46] gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46] gi|289569259|ref|ZP_06449486.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17] gi|289749796|ref|ZP_06509174.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92] gi|289415608|gb|EFD12848.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46] gi|289543013|gb|EFD46661.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17] gi|289690383|gb|EFD57812.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92] Length = 563 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 9/361 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P+V+ A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +PML+ Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++P+ L+L PTRELA QVA+ F +YG + L V + GG + Q L R Sbjct: 75 ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++ ++ LV+DEAD ML MGF ++ I S P +Q Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S +L +P + ++ AE I ++ Q ++K L ++L+ Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKMDALTRVLEV 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI G++ Q R + ++ ++G I ++VA Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ ++ + AIE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 362 K 362 K Sbjct: 367 K 367 >gi|260773326|ref|ZP_05882242.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] gi|260612465|gb|EEX37668.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] Length = 428 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 159/406 (39%), Positives = 244/406 (60%), Gaps = 11/406 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G +P++V A+ + GY K TPIQ + IP + HD+ AQTGTGKTA+F LP++ Sbjct: 1 MSFLSQGFAPELVKALTECGYEKLTPIQQQAIPEARKGHDIFATAQTGTGKTAAFSLPVI 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ G+ R LIL PTRELAAQ+A N + Y K +L+V + GG +Q ++ Sbjct: 61 QRLLDSGKKPSPHTARALILAPTRELAAQIAQNIKDYVKYTSLSVTAVYGGNKMSSQVRQ 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ TPGR+ +H + G + + N+E LV DEADR+LDMGFI ++ I V + Sbjct: 121 LESGVDILVATPGRLEEHLSEGNVSLANLEFLVFDEADRILDMGFINPVRKIMLEVETSP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + +L +++ + L+ PKRI + ++TA T+ H V +K LL +L Sbjct: 181 QIMMFSATTSAQLNQLAGDILRKPKRINADRVNTTASTVAH--VVYPVDQERKTELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F N K+ + L+ G HG+ Q +R + L FKEG ++ Sbjct: 239 I-GRKNWQQVLVFVNYKETANQVVKELKLDGIKAVICHGDKGQSARRRALDEFKEGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI D+ HV N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 298 MVATDVAARGLDIVDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVSREEELTLI 357 Query: 359 AIEKLIE---KKVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNP 398 +E LI+ ++V+ + + LEK+ + R+NNP Sbjct: 358 QVENLIQQRIRRVEQPGYEPKKRDAYLEKLHTKAAFKDRQGRRNNP 403 >gi|260204506|ref|ZP_05771997.1| hypothetical protein MtubK8_09388 [Mycobacterium tuberculosis K85] gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85] gi|289538344|gb|EFD42922.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85] Length = 563 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 9/361 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P+V+ A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +PML+ Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++P+ L+L PTRELA QVA+ F +YG + L V + GG + Q L R Sbjct: 75 ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++ ++ LV+DEAD ML MGF ++ I S P +Q Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPKYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S +L +P + ++ AE I ++ Q ++K L ++L+ Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKMDALTRVLEV 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI G++ Q R + ++ ++G I ++VA Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ ++ + AIE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 362 K 362 K Sbjct: 367 K 367 >gi|288959250|ref|YP_003449591.1| ATP-dependent RNA helicase [Azospirillum sp. B510] gi|288911558|dbj|BAI73047.1| ATP-dependent RNA helicase [Azospirillum sp. B510] Length = 456 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 227/370 (61%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL P V+ A+ Y PTP+Q+ IP LQ D+ A+TGTGKTA+F+LP L Sbjct: 1 MSFSELGLHPLVLKALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 T E PR L+L PTRELA QV D KY K L + ++GG+P+ Q + L Sbjct: 61 TRTAELPLNGAATPRVLVLAPTRELAKQVTDAARKYAKFMKLNIVDVVGGMPYREQLRLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 R DVL+ TPGR+LDH R ++ ++ +E+L++DEADRMLDMGF+ ++ I P TRQ Sbjct: 121 SRPVDVLVATPGRLLDHVARRRIALDEVEVLILDEADRMLDMGFLDDVETIAKCCPPTRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLF+AT+ + +++ N L+NP+R+ V + +++ + A + ++ L Q Sbjct: 181 TLLFTATLDRRMAQLAGNLLRNPERVAVESQATSVNVEQRLHHADDMDHKRR---LLQHF 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q+ + IIF K++ L L G + A+HG++DQ R + L + G ++L+ Sbjct: 238 AAQEEVGKAIIFAATKRDADTLAEELSAAGHAAAALHGDMDQTKRNRTLQRLRTGQVRLL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ D+ HV NFD+P AE+Y+HRIGRTGRAG G A + A+ D + + Sbjct: 298 VATDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRTGRAGASGVAISFAARADRETLVR 357 Query: 360 IEKLIEKKVD 369 IE+ + ++ Sbjct: 358 IERYTKATLE 367 >gi|238784236|ref|ZP_04628248.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970] gi|238714803|gb|EEQ06803.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970] Length = 451 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 245/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLNQNQEPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPVSVEVARRNTASEQITQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str. Alaska E43] gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str. Alaska E43] Length = 432 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/421 (38%), Positives = 250/421 (59%), Gaps = 15/421 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL + + A+ +AGY PTPIQ ++IP +L+ D G AQTGTGKTA+F +P+L Sbjct: 1 MLFKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + K + + RT LIL PTRELA Q+ +NF Y K+ N+ ++ GG+ + Q + Sbjct: 61 QNIAKNQNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD ++ + ++N++ V+DEADRM DMG + ++ I + +P Sbjct: 121 ILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E++ + + L++P ++EV SST +TI + K +LL Sbjct: 181 RQNLLFSATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVY--FVTKKDKKSLLVH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++K+ ++F K N+ L K G AIHGN Q +R LSNFKEG I+ Sbjct: 239 LLKDE-SIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ + HV N+D+P+ E Y+HRIGRTGRAG G A + ++ + Sbjct: 298 VLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSSL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQ 416 IEK I K + + N E+I I + RK +K+T +++ K+N+ + Sbjct: 358 KDIEKTIGKNIPVMK------NVEFERIAITREPAQRKE--ADKKTTDANKKPKRNWYGE 409 Query: 417 K 417 K Sbjct: 410 K 410 >gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] Length = 503 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 156/369 (42%), Positives = 229/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS ++ AV G+ + TPIQ +TIPL L+ HD+ G AQTGTGKTA+F +P++ Sbjct: 4 FQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPLI-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK V + LI+ PTRELA QV++ K G+ + V + GG Q + L++ Sbjct: 62 -EKVDVNVDAIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQIRALKKH 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR L + ++ +++DEAD ML+MGFI I+ I S VP QTLL Sbjct: 121 PHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPENHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ PK ++V T I ++ Q +K +L +LL Q Sbjct: 181 FSATMPTPIRRIAEKFMNEPKVVKVKAKEVTMPNITQYYLE--VQEKRKFDILTRLLDMQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIF K+ V L +L +G+S IHG++ Q R+ +L FKEG+I ++VA+ Sbjct: 239 -SPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V + + IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHNIER 357 Query: 363 LIEKKVDWL 371 ++K++ L Sbjct: 358 TTKRKMERL 366 >gi|257091933|ref|YP_003165574.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044457|gb|ACV33645.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 474 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 152/394 (38%), Positives = 242/394 (61%), Gaps = 30/394 (7%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA++GL P ++ A+ D+GY +PTP+Q + IP ++ D+ +QTG+GKTA+F+LP L Sbjct: 1 MNFAEIGLHPAILKALTDSGYSEPTPVQQQAIPPAIEGRDLMVSSQTGSGKTAAFMLPAL 60 Query: 61 TIL-------------EKGRARVR----------MPRTLILEPTRELAAQVADNFEKYGK 97 E+G AR R PR L+L PTRELA QV EKYG+ Sbjct: 61 HRFALQERPAAVPRPSERGAARPRGHDRQRFQAAQPRMLVLTPTRELALQVTAATEKYGR 120 Query: 98 N-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD 156 +++ ++GG+P+ Q + L R ++L+ TPGR++DH + GK+ + ++ILV+DEAD Sbjct: 121 QLHHVRAVAILGGMPYPKQMELLGRNPEILVATPGRLIDHMSSGKIDFSQLQILVLDEAD 180 Query: 157 RMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216 RMLDMGFI I+ I + P +RQTLLFSAT+ + ++++ + RI+V+ S+ + Sbjct: 181 RMLDMGFIEDIERIVAATPGSRQTLLFSATLDGTVGELAQRMTRAALRIQVDATSARHDN 240 Query: 217 IEH--CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 IE FV A K LL LL+ T+ ++F K++ + L G + A Sbjct: 241 IEQRMHFVDDLAH---KNRLLDHLLRDA-TIDQALVFTATKRDADTVSDRLNVAGLNAAA 296 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + L+ + G ++++VA+D+AARG+D+P + HVFN+D+P AE+Y+HRIG Sbjct: 297 LHGDMHQGARNRTLAAMRRGQVRILVATDVAARGIDVPTITHVFNYDLPKFAEDYVHRIG 356 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 RTGRAGR+G A +LV + ++ IE+ ++ + Sbjct: 357 RTGRAGRNGLAISLVHHAEHFNVRKIERFTKQPI 390 >gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043] gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043] Length = 605 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 152/380 (40%), Positives = 224/380 (58%), Gaps = 14/380 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL +++ A D GY P+PIQ TIP +L+ DV G+AQTGTGKTA+F LP+L Sbjct: 28 FADLGLDERILKATRDLGYEHPSPIQAATIPAMLEGRDVVGLAQTGTGKTAAFALPILAR 87 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + + P+ L+L PTRELA QV + FE+Y N + V + GG + Q L R Sbjct: 88 LD---LKQKTPQALVLAPTRELALQVCEAFERYAANLRGVHVLPVYGGQGYGVQLSALRR 144 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGRI+DH +G L ++ + LV+DEAD ML MGF ++ I + P +Q Sbjct: 145 GVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPADKQVA 204 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++S+ L +P I V ++TA I ++ Y +K L ++L+ Sbjct: 205 LFSATMPAQIRRISKQHLTDPVEITVKAKTTTAPNITQRYL--IVSYPQKVDALTRILEV 262 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + I+F K L L +GFS AI+G+I Q R + + + G + ++VA Sbjct: 263 EN-FEGMIVFVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILVA 321 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV NFD+P E+Y+HRIGRTGRAGR G A + V + + AIE Sbjct: 322 TDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERHLLKAIE 381 Query: 362 KLIEKKVDWLNGDLSSLNPP 381 K + L+ + PP Sbjct: 382 KATRQG-------LTEMRPP 394 >gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 481 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 150/385 (38%), Positives = 236/385 (61%), Gaps = 15/385 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+ ++ A+ +G+ + TPIQ +TIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + + + +++EPTRELA Q + + G++ N V ++ GG Q + L+ Sbjct: 61 QKLDLDKQEQAI-QAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++L+ TPGR+LDH R + ++ ++ +V+DEAD MLDMGFI I++I + QT Sbjct: 120 KAPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238 LLFSATM +Q + E F+ +P+ +++ TA+ I+ FV ++ C L+ Sbjct: 180 LLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLID-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ D ++F K+ V L L +G++ IHG++ Q RM++L FKEG + + Sbjct: 238 VENPDL---AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG+ G + T V +I ++ Sbjct: 295 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMR 354 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383 IE LI+KK +S L PP + Sbjct: 355 TIEDLIKKK-------MSPLRPPTD 372 >gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 625 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/367 (40%), Positives = 229/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL+ +V A+ D GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLNESLVRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNS 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ P+ L+L PTRELA QVA+ F Y K L V + GG + Q L R Sbjct: 68 IDPN---TNAPQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQLNALRR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH RG L ++ ++ +V+DEAD ML MGFI I+ I P TRQ Sbjct: 125 GPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ +L NP +++ +ST ETIE FV +Q++K AL++ +L+ Sbjct: 185 LFSATMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQV-SQHNKLEALVR-VLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 243 EKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGQLDIIIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361 Query: 362 KLIEKKV 368 + ++ Sbjct: 362 RATNSRI 368 >gi|56708046|ref|YP_169942.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis SCHU S4] gi|110670517|ref|YP_667074.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis FSC198] gi|224457133|ref|ZP_03665606.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis MA00-2987] gi|254370532|ref|ZP_04986537.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis FSC033] gi|254874848|ref|ZP_05247558.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp. tularensis MA00-2987] gi|54113663|gb|AAV29465.1| NT02FT0547 [synthetic construct] gi|56604538|emb|CAG45585.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis SCHU S4] gi|110320850|emb|CAL08968.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis FSC198] gi|151568775|gb|EDN34429.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis FSC033] gi|254840847|gb|EET19283.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp. tularensis MA00-2987] gi|282159241|gb|ADA78632.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis NE061598] Length = 441 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 150/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I +L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKYNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+ N AE+Y+HRIGRTGR+G+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRSGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLI 364 IE LI Sbjct: 358 IEHLI 362 >gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931] gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931] Length = 695 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 152/375 (40%), Positives = 231/375 (61%), Gaps = 9/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P+V+ A+ + GY KP+PIQ +TIPL+L DV G+AQTGTGKTA+F LP L+ Sbjct: 106 FTDLGLDPRVLSALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFALPALSR 165 Query: 63 ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L R + L+L PTRELA QVA+ F Y + + TV + GG P+ Q Sbjct: 166 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 225 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGA V++ TPGR++DH +G L ++N++ LV+DEAD ML MGF ++ I P + Sbjct: 226 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAK 285 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM + ++K+++ +L +P + V T ++T I ++ +S K + ++ Sbjct: 286 QVALFSATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVM--HSHKLDAMTRV 343 Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ ++ +GII F KK + L+ +GF AI+G+I Q+ R + + ++G I Sbjct: 344 LEVENY--DGIIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRID 401 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + V N+D+P+ E+Y+HRIGRTGRAGR G+A V + + Sbjct: 402 ILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYML 461 Query: 358 DAIEKLIEKKVDWLN 372 IEK +KV+ ++ Sbjct: 462 RQIEKATRQKVEPMH 476 >gi|325964224|ref|YP_004242130.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans Sphe3] gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans Sphe3] Length = 710 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 230/375 (61%), Gaps = 9/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ +V+ A+ D GY KP+PIQ TIPL+L+ DV G+AQTGTGKTA+F +P L+ Sbjct: 69 FADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 128 Query: 63 LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 L + R + L+L PTRELA QVA+ F Y K+ + TV + GG + Q Sbjct: 129 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 188 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGA V++ TPGR++DH ++G L ++ ++ LV+DEAD ML MGF ++ I P R Sbjct: 189 LRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDR 248 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM +++++S+ +L NP I V + ++T ++ + K + ++ Sbjct: 249 QVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPH--KLDAMTRI 306 Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ ++ +G+I F K +L L+ +GF AI+G+I Q+ R + + KEG I Sbjct: 307 LEVEEF--DGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRID 364 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A + + + Sbjct: 365 ILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLL 424 Query: 358 DAIEKLIEKKVDWLN 372 +IEK + V+ ++ Sbjct: 425 RSIEKATRQPVEQMH 439 >gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Mycobacterium bovis AF2122/97] gi|121637182|ref|YP_977405.1| putative cold-shock dead-box protein a homolog deaD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215430135|ref|ZP_03428054.1| hypothetical protein MtubE_05528 [Mycobacterium tuberculosis EAS054] gi|224989657|ref|YP_002644344.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis BCG str. Tokyo 172] gi|260186187|ref|ZP_05763661.1| hypothetical protein MtubCP_09173 [Mycobacterium tuberculosis CPHL_A] gi|289446844|ref|ZP_06436588.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis CPHL_A] gi|289753325|ref|ZP_06512703.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054] gi|31618035|emb|CAD94146.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent RNA helicase deaD homolog) [Mycobacterium bovis AF2122/97] gi|121492829|emb|CAL71300.1| Probable cold-shock dead-box protein a homolog deaD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772770|dbj|BAH25576.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis BCG str. Tokyo 172] gi|289419802|gb|EFD17003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis CPHL_A] gi|289693912|gb|EFD61341.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054] Length = 563 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 9/361 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P+V+ A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +PML+ Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++P+ L+L PTRELA QVA+ F +YG + L V + GG + Q L R Sbjct: 75 ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++ ++ LV+DEAD ML MGF ++ I S P +Q Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S +L +P + ++ AE I ++ Q ++K L ++L+ Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKMDALTRVLEV 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI G++ Q R + ++ ++G I ++VA Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ ++ + AIE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 362 K 362 K Sbjct: 367 K 367 >gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp. holarctica LVS] gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp. holarctica OSU18] gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010493|ref|ZP_02275424.1| hypothetical protein Ftulh_07207 [Francisella tularensis subsp. holarctica FSC200] gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp. holarctica 257] gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella tularensis subsp. holarctica URFT1] gi|295312305|ref|ZP_06803094.1| DEAD/DEAH box helicase domain-containing protein [Francisella tularensis subsp. holarctica URFT1] gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp. holarctica LVS] gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp. holarctica OSU18] gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp. holarctica 257] gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 569 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 148/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ +V V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +R R P+ L+L PTRELA QVA+ FE + KN NL VA + GG + +Q + L+ Sbjct: 68 NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI +Q + S V Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVQFVLSHVSEQCQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|304410127|ref|ZP_07391746.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307302161|ref|ZP_07581919.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304351536|gb|EFM15935.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306914199|gb|EFN44620.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 433 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 231/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F SP+++ A+ D GY + TPIQ + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++E ++ R LIL PTRELAAQVADN Y K N +V + GG+ E Q +K Sbjct: 61 QKMVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGADV++ TPGR+L+H L ++N++ LV+DEADRMLDMGF IQ I V R Sbjct: 121 LKRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++K++ + + P+ I V+ ++TA+T+ V + +K LL +L Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ + ++F + L L G +HG+ Q SR + L F G +++ Sbjct: 239 IGKKN-WQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIP + +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +++ Sbjct: 358 DIEKLIGQQI 367 >gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. holarctica URFT1] gi|295313716|ref|ZP_06804297.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. holarctica URFT1] gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 441 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 158/398 (39%), Positives = 249/398 (62%), Gaps = 8/398 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSNNPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I +L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE LI + + L G ++ N P+ ++ N A+K Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPIT--SMSHKNKAKK 393 >gi|308189119|ref|YP_003933250.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1] gi|308059629|gb|ADO11801.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1] Length = 640 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 238/377 (63%), Gaps = 11/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ ++ GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ ++ K+ L V L GG ++ Q + L + Sbjct: 68 IDP---TVKAPQILVLAPTRELAVQVAEAITEFSKHMRGLNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLELSNLRGLVLDEADEMLRMGFIEDVETIMAQIPAGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSY---WTAYGRKTDALVRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 361 RTMKLTIPEVELPNAEL 377 >gi|15598036|ref|NP_251530.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] gi|116050844|ref|YP_790333.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14] gi|218890962|ref|YP_002439828.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] gi|254235828|ref|ZP_04929151.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719] gi|254241507|ref|ZP_04934829.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192] gi|9948926|gb|AAG06228.1|AE004710_10 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] gi|115586065|gb|ABJ12080.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas aeruginosa UCBPP-PA14] gi|126167759|gb|EAZ53270.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719] gi|126194885|gb|EAZ58948.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192] gi|218771187|emb|CAW26952.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] Length = 567 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 236/369 (63%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ P V+ A++ GY +P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LP+L+ Sbjct: 19 FAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSR 78 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R R P+ L+L PTRELA QVA E Y K + V + GG P Q K L + Sbjct: 79 IDPSR---REPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQ 135 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGR+ DH R + L+ ++ LV+DEAD ML +GF+ ++ I +P +RQT+ Sbjct: 136 GAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTV 195 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ PK +++ + T IE + +A +K +Q+LL+ Sbjct: 196 LFSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHA--DQKAGSIQRLLEV 253 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + I F K+ ++ LE+QG+ A++G++ Q R +++ + K+G++ ++ Sbjct: 254 EQFDAL---IAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIV 310 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+P + HV N D+P E+Y+HRIGRTGRAGR G+A LV + + + Sbjct: 311 IATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 370 Query: 360 IEKLIEKKV 368 IE++ +KV Sbjct: 371 IERVTGQKV 379 >gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 433 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 231/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F SP+++ A+ D GY + TPIQ + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++E ++ R LIL PTRELAAQVADN Y K N +V + GG+ E Q +K Sbjct: 61 QKMVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGADV++ TPGR+L+H L ++N++ LV+DEADRMLDMGF IQ I V R Sbjct: 121 LKRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++K++ + + P+ I V+ ++TA+T+ V + +K LL +L Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ + ++F + L L G +HG+ Q SR + L F G +++ Sbjct: 239 IGKKN-WQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIP + +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +++ Sbjct: 358 DIEKLIGQQI 367 >gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166] Length = 441 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 155/366 (42%), Positives = 225/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + Y KPTP+Q + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A+V R L+L PTRELA QV ++F YG+N L + GG+ Q Sbjct: 61 QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + S +P R Sbjct: 121 LRKGIDVLVATPGRLLDLYRQNAVGFAQLQALVLDEADRMLDLGFAEELDALFSALPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT ++ +++++ L++P +EV+ ++ A+T++ V +K L L Sbjct: 181 QTLLFSATFSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPV--DKKRKSELFLHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ ++F +K V L L+ QG + AIHG+ Q SR++ L FK G +Q+ Sbjct: 239 L-AERRWGQVLVFVKTRKGVDQLVDELQAQGIASDAIHGDKPQASRLRALERFKAGEVQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V NFD+P AE+Y+HRIGRTGRAG G+A +LVA +++ + Sbjct: 298 LVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGASGEAISLVAADEVDQLA 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIETLI 363 >gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis WY96-3418] Length = 569 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ +V V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +R R P+ L+L PTRELA QVA+ FE + KN NL VA + GG + +Q + L+ Sbjct: 68 NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S V Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQSQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str. Eklund 17B] gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str. Eklund 17B] Length = 432 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 164/421 (38%), Positives = 249/421 (59%), Gaps = 15/421 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL + + A+ +AGY PTPIQ ++IP +L D G AQTGTGKTA+F +P+L Sbjct: 1 MLFKDLNIIEPIQRALTEAGYTNPTPIQEQSIPSLLNGKDFLGCAQTGTGKTAAFAIPVL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + + + PRT LIL PTRELA Q+ +NF Y K+ N+ ++ GG+ + Q + Sbjct: 61 QNIAQNQKKSDKPRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD ++ + ++N++ V+DEADRM DMG + ++ I + +P Sbjct: 121 ILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E++ + + L++P ++EV SST +TI + K +LL Sbjct: 181 RQNLLFSATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVY--FVTKKDKKSLLVH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++K+ ++F K N+ L K G AIHGN Q +R LSNFKEG I+ Sbjct: 239 LLKDE-SIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ + HV N+D+P+ E Y+HRIGRTGRAG G A + ++ + Sbjct: 298 VLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSAL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQ 416 IEK I K + + N E+I I + RK +K+T +++ K+N+ Sbjct: 358 KDIEKTIGKNIPVMK------NVEFERIAITREPAQRKE--ADKKTTDANKKPKRNWYGD 409 Query: 417 K 417 K Sbjct: 410 K 410 >gi|27904825|ref|NP_777951.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340034|sp|Q89AF9|DEAD_BUCBP RecName: Full=Cold-shock DEAD box protein A homolog; AltName: Full=ATP-dependent RNA helicase deaD homolog gi|27904223|gb|AAO27056.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 602 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 232/373 (62%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ GL+ ++ A+ D GYV+P+PIQ IP +++ DV G+AQTG+GKTA+F LP+L Sbjct: 6 MTFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + + VR+P+ L+L PTRELA QVA+ F + K + V L GG ++ Q K L Sbjct: 66 HNI---KLDVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G +++ TPGR+LDH R L ++N+ LV+DEAD ML MGFI ++ I + +P Q Sbjct: 123 RKGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + ++++S F++NPK I + + +T I+ + + Y KK L + L Sbjct: 183 TALFSATMPEAIRRISRRFMKNPKEIRIQSNITTRPDIQQSY---WMVYGKKTDALIRFL 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + LE+ G++ A++G+++Q R + L K+G + ++ Sbjct: 240 EAED-FSATIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDIL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR GKA V + + + Sbjct: 299 IATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRN 358 Query: 360 IEKLIEKKVDWLN 372 IE+ + + +N Sbjct: 359 IERAMNISISEVN 371 >gi|238798926|ref|ZP_04642391.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969] gi|238717236|gb|EEQ09087.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969] Length = 451 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 160/374 (42%), Positives = 237/374 (63%), Gaps = 12/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLNQNQEPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPVSVEVARRNTASEQITQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKV 368 K + IE+L+++++ Sbjct: 355 KLLRDIERLLKREI 368 >gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] Length = 493 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 146/348 (41%), Positives = 217/348 (62%), Gaps = 6/348 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G P+++ + D Y +PT IQ + IPL+++ D+ G AQTGTGKTA+F+LP+L Sbjct: 5 FASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILNA 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++G+ R + LIL PTREL+ Q+A EK GK+ N+ V L GG + Q KL+ Sbjct: 65 LDEGK---RDIQALILTPTRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLSKLKET 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH RG L I LV+DEAD+M++MGF+ ++ + P RQ LL Sbjct: 122 VQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++K++ F++ P I++ T E IE F Q K AL+ L Q Q Sbjct: 182 FSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQ-FYYVVNQSDKTDALVDVLEQEQ 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F N + V L L++ G S A++G++ Q R +++ F+E Q ++A+ Sbjct: 241 PFLT--IVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 D+AARGLD+ V HV N+D+PN ++YIHR+GRTGRAG+ GKA +L++ Sbjct: 299 DIAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLIS 346 >gi|261855960|ref|YP_003263243.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2] gi|261836429|gb|ACX96196.1| DEAD/DEAH box helicase domain protein [Halothiobacillus neapolitanus c2] Length = 469 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 174/427 (40%), Positives = 250/427 (58%), Gaps = 15/427 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+LGL P+++ A+ GY PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFAELGLMPELLTALDAVGYTSPTPIQREAIPIVLSGRDLLAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L P R L+L PTRELA+QV ++ ++YG+ LT ++ GG+ Q Sbjct: 61 QRLATTPVLHPAPKHRIRALVLTPTRELASQVEESVKQYGQKLKLTSMVIFGGVNINPQR 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L+R D+L+ TPGR+LDH +G + + +EILV+DEADRMLDMGFI I+ + +L+P Sbjct: 121 DRLQRKLDILVATPGRLLDHVGQGNVDLGGVEILVLDEADRMLDMGFIRDIKRVLALLPK 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT E++ ++N L NP ++EV +TAE +E K ALLQ Sbjct: 181 QRQNLLFSATFAPEIKTFAQNLLDNPAKVEVAPQVTTAERVEQRIYPV--DRDAKKALLQ 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL+ ++F K L L+K G AIH N Q +R K L FK G + Sbjct: 239 QLI-VDGNWNQVLVFTRTKHGANRLAEQLDKDGIPAMAIHSNKSQSAREKALGAFKAGKL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARG+DI + HV N+++PN E+Y+HRIGRTGRAG G+A +LV ++ K Sbjct: 298 RVLVATDIAARGIDIDALPHVVNYELPNVPEDYVHRIGRTGRAGAGGEAVSLVCVDEHKL 357 Query: 357 IDAIEKLIEKK-----VDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + IE+ I +K V D ++ PL K A+ R++ P P+ + G + Sbjct: 358 LADIERTIRQKLERVIVPGFEPDPNARPEPLRKPQAAR--QPRRDFP-PRSAQGHGGQGH 414 Query: 412 NYSSQKS 418 N + +S Sbjct: 415 NAQAPRS 421 >gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2] gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2] Length = 506 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 231/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L +S + +V G+ + TPIQ TI L ++ D+ G AQTGTGKT +F +P++ Sbjct: 4 FSELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ V+ LI+ PTRELA QV++ + G++ N+ + + GG Q + L+ Sbjct: 64 IDTKDGNVQ---GLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALKNR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR L ++N+ L++DEAD ML+MGFI IQ I + VP TRQTLL Sbjct: 121 PQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D +++++E F++ P+ +++ + T E IE +V + + +K L +LL Q Sbjct: 181 FSATMPDAIRRIAEKFMKTPEIVKIKSKEMTVENIEQFYVKSVER--EKFDFLSRLLNVQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G+ IHG++ Q RM +L FK G I ++VA+ Sbjct: 239 QP-ELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E+ Sbjct: 298 DVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIVER 357 Query: 363 LIEKKVDWL 371 +KK++ L Sbjct: 358 TTKKKMEAL 366 >gi|58336606|ref|YP_193191.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus NCFM] gi|227903163|ref|ZP_04020968.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus ATCC 4796] gi|58253923|gb|AAV42160.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus NCFM] gi|227869149|gb|EEJ76570.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus ATCC 4796] Length = 495 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 152/384 (39%), Positives = 239/384 (62%), Gaps = 14/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL L+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNEALLKAIKRSGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I++K ++ +I+EPTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 61 QIIDKKEKAIQ---AIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +L+ TPGR+LDH RG + ++ ++ +V+DEAD MLDMGFI I++I Q Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRNQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + ++ E F+ NP+ +++ TA+ I+ FV A+ S+K ++ +L+ Sbjct: 178 TLLFSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQYFV--RAKESEKFDIMCRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + ++ Sbjct: 236 DVQGP-DLAVVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383 IE+L +KK +S L PP + Sbjct: 355 IEQLTKKK-------MSPLRPPTD 371 >gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001] gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus LMS2-1] gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG] gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705] gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001] gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus LMS2-1] gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG] gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705] gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG] Length = 502 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 227/368 (61%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ A+ +G+ + TPIQ +TIPLVL+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++K R + L++ PTRELA Q + + G++ + V + GG Q ++L Sbjct: 61 QHIDKAD---RSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLA 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGRILDH R L + +++ LV+DEAD MLDMGFI I+ I +P RQT Sbjct: 118 DHPQIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + +++ F++ P +++ TA+T+E +V A+ +K ++ +L Sbjct: 178 LLFSATMPAAIMRLTNKFMKEPVIVKIKAKELTADTVEQYYVR--AKDYEKFDVMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD +IF K+ V L L+ +G+ IHG++ Q+ RM +L FK G + +V Sbjct: 236 VQDP-DLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG G + T V +I+++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354 Query: 361 EKLIEKKV 368 E L +K++ Sbjct: 355 EDLTKKRM 362 >gi|152986038|ref|YP_001347685.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7] gi|150961196|gb|ABR83221.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7] Length = 553 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 235/369 (63%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ P V+ A+ GY +P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LP+L+ Sbjct: 8 FAALGIHPNVLAAITAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R R P+ L+L PTRELA QVA E Y K + V + GG P Q K L + Sbjct: 68 IDPSR---REPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGR+ DH R + L+ ++ LV+DEAD ML +GF+ ++ I +P +RQT+ Sbjct: 125 GAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L+ PK +++ + T IE + +A +K +Q+LL+ Sbjct: 185 LFSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHA--DQKAGSIQRLLEV 242 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + I F K+ ++ LE+QG+ A++G++ Q R +++ + K+G++ ++ Sbjct: 243 EQFDAL---IAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIV 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+P + HV N D+P E+Y+HRIGRTGRAGR G+A LV + + + Sbjct: 300 IATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359 Query: 360 IEKLIEKKV 368 IE++ +KV Sbjct: 360 IERVTGQKV 368 >gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales bacterium SWAT-3] gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales bacterium SWAT-3] Length = 423 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 149/377 (39%), Positives = 231/377 (61%), Gaps = 9/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS ++ + + + PT +Q + IPLVL+ DV AQTGTGKTA+F LP++ Sbjct: 8 FNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQR 67 Query: 63 LEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + V ++ R L+L PTRELA QV DN Y K +L V + GG+ + Q Sbjct: 68 LLATKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDLKVVVAYGGVSMKVQTDN 127 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L GAD+L+ TPGR++DH ++++ E+LV+DEADRMLDMGF+P I+ I S + R Sbjct: 128 LRAGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNEVR 187 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT ++++ ++ +Q+P I+V +STAET++ +K LL L Sbjct: 188 QTLFFSATFDNKIKAIAHRMMQSPSEIQVTPTNSTAETVKQMVYPV--DKKRKSELLAYL 245 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S + + ++F K+ L L+ G +I+G+ Q +R K L +FK G ++ Sbjct: 246 IGS-NNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRA 304 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ + Sbjct: 305 LIATDVAARGIDIQQLEQVVNYDMPYKAEDYVHRIGRTGRAGNSGLAISLMSHDEAYLLG 364 Query: 359 AIEKLIEKKV--DWLNG 373 AIE+L++ ++ +WL G Sbjct: 365 AIERLLDTRLPQEWLKG 381 >gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] Length = 602 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 152/361 (42%), Positives = 219/361 (60%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ +++ A+ D GY P+PIQ TIP +L DV G+AQTGTGKTA+F +P+L Sbjct: 31 FADLGIDDRILRAIADVGYESPSPIQAATIPPLLDGADVVGLAQTGTGKTAAFAIPILMG 90 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE R PR L+L PTRELA QVA+ F +Y + L V + GG + Q L R Sbjct: 91 LE---VTGRQPRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQLSGLRR 147 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +G L ++ ++ LV+DEAD ML MGF ++ I + P +Q Sbjct: 148 GAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTPREKQVA 207 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S+ +L+ P I V + T I +V Q +K L ++L+ Sbjct: 208 LFSATMPAAIRKISKQYLREPVEITVKAKTQTNTNITQRWVQVSHQ--RKLDALTRVLEV 265 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K+ L L +GFS AI+G+I Q R + + K G + ++VA Sbjct: 266 E-PFEAMIIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILVA 324 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G+A VA + + AIE Sbjct: 325 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGQALLFVAPRERHLLKAIE 384 Query: 362 K 362 + Sbjct: 385 R 385 >gi|51245265|ref|YP_065149.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54] gi|50876302|emb|CAG36142.1| related to ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54] Length = 424 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 235/370 (63%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL +++ V + GY P+ IQ + IP+VL + DV +A TGTGKTA F LPM+ Sbjct: 1 MSFAILGLCDELLQTVAEQGYTTPSQIQTEAIPVVLNQRDVMAVAHTGTGKTAGFTLPMV 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L G + + R L++ PTRELAAQVA++ + YG N+ GG+ E Q KL Sbjct: 61 QLLSGGDSPQPCTVRALVITPTRELAAQVAESVQTYGSMMNIRTGAAFGGVRIEPQIAKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G DVL+ TPGR+LD +N+ + + ++ILV+DEADRMLD+GFI I++I +L+P RQ Sbjct: 121 QAGLDVLVATPGRLLDLYNQQAVSFDALKILVLDEADRMLDLGFIDDIRHIQTLLPAKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT ++E++ ++ L +P IEV+T + ++I+ +K ALL L+ Sbjct: 181 TLMFSATFSEEIKSLAGGMLHDPVLIEVDTDKNIVDSIKQKMHPV--DQERKSALLIHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++F K+ L L++ G + +IH N Q +R + L FK G++ ++ Sbjct: 239 KKYN-WQQLLVFSRTKRGADTLVTQLKEAGINAESIHANRTQYARTRALDGFKNGSVVVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RG+D+ + V NFD+P AE+Y+HRIGRTGRAG G A + ++++ + + + Sbjct: 298 VATDIASRGIDVHQLPCVINFDLPYVAEDYVHRIGRTGRAGTSGLAVSFFSEDEAQQLAS 357 Query: 360 IEKLIEKKVD 369 IEKLI +K + Sbjct: 358 IEKLIGRKFE 367 >gi|187931712|ref|YP_001891696.1| ATP-dependent RNA helicase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712621|gb|ACD30918.1| ATP-dependent RNA helicase [Francisella tularensis subsp. mediasiatica FSC147] Length = 441 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 150/365 (41%), Positives = 234/365 (64%), Gaps = 4/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY K TPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICSALEKKGYTKLTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ A++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GA++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I +L+P Q Sbjct: 121 RKGAEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+ N AE+Y+HRIGRTGRAG+ G A +L++ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLISADEVESLSN 357 Query: 360 IEKLI 364 IE LI Sbjct: 358 IEHLI 362 >gi|126665223|ref|ZP_01736206.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17] gi|126630593|gb|EBA01208.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17] Length = 504 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 152/363 (41%), Positives = 222/363 (61%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA+LGL+P V+ AV GY PTPIQ ++IP +L + G+AQTGTGKTA+F LP+L Sbjct: 4 LSFAELGLNPAVLEAVTAVGYETPTPIQAQSIPALLSGRHLLGVAQTGTGKTAAFALPLL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ V P+ L+L PTRELA QVA+ F Y N V + GG F Q K L Sbjct: 64 SRVDPN---VNAPQILVLAPTRELAIQVAEAFSTYASKLPNFHVLPIYGGQDFFPQIKGL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA V++ TPGR+LDH +G L ++N++ LV+DEAD ML MGFI ++ I S P Q Sbjct: 121 RRGAHVIVGTPGRMLDHLRKGTLKLDNLKALVLDEADEMLRMGFIDDVEAILSKTPDNCQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++KV++ +L++ + + + S T + I + YA+ +K L ++L Sbjct: 181 RALFSATMPPQIKKVAQTYLKDAVEVRIESASRTVDAISQYVLPVYAE--RKLDALTRIL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + IIF K + L L +G + ++G+++QR R + + + K G ++ Sbjct: 239 EVE-PFDASIIFVRTKAETIVLAEKLAARGHAAAPLNGDLNQRQREQTVEDLKRGKKDIV 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+P + HV N+DVP E YIHRIGRTGRAGR GKA LV + + Sbjct: 298 VATDVAARGLDVPRITHVINYDVPYDTEAYIHRIGRTGRAGRDGKAILLVTPRERSWLRT 357 Query: 360 IEK 362 +E+ Sbjct: 358 LER 360 >gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1] gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1] Length = 726 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 151/375 (40%), Positives = 230/375 (61%), Gaps = 9/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ +V+ A+ D GY KP+PIQ TIPL+L+ DV G+AQTGTGKTA+F +P L+ Sbjct: 73 FVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 132 Query: 63 LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 L + R + L+L PTRELA QVA+ F Y K+ + TV + GG + Q Sbjct: 133 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 192 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGA V++ TPGR++DH +G L ++ ++ LV+DEAD ML MGF ++ I P TR Sbjct: 193 LRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTPETR 252 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM +++++S+ +L NP I V + ++T + ++ + K L ++ Sbjct: 253 QVALFSATMPGQIRRMSKQYLNNPAEISVKSKTTTGANTKQRYLQVMGPH--KLDALTRI 310 Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ ++ +G+I F K +L L+ +GF AI+G+I Q+ R + + KEG I Sbjct: 311 LEVEEF--DGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRID 368 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A + + + Sbjct: 369 ILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLL 428 Query: 358 DAIEKLIEKKVDWLN 372 +IEK + V+ ++ Sbjct: 429 RSIEKATRQPVEQMH 443 >gi|284040525|ref|YP_003390455.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74] gi|283819818|gb|ADB41656.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74] Length = 475 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 228/369 (61%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L+ +++ AV + GY PTPIQ KTIPL L HDV GIAQTGTGKTA+++LP+L Sbjct: 6 FEQFELNRQLLNAVAELGYTVPTPIQQKTIPLSLGNHDVLGIAQTGTGKTAAYLLPIL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ A+ + PR LIL PTREL Q+ + GK +L L GG+ + Q + L G Sbjct: 64 MKVKYAQGKNPRALILAPTRELVMQINQAVSELGKYTDLRHLALYGGLGPKTQIETLRNG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR +D + G+++ I +V+DEAD+M+DMGF+P I++I ++P RQ LL Sbjct: 124 VDIIVATPGRFMDLYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIPTKRQNLL 183 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++++S FL+ P ++EV +STA+ + + + K +L L++ + Sbjct: 184 FSATFGGRVERLSSEFLEAPIKVEVTPQASTADMVSQV-IYEAPNFRTKINMLDYLMRQE 242 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS---VCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + IIF K N+ L ++ + IH N Q +R+ + FKEG IQ++ Sbjct: 243 D-FQRVIIFARTKGTADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEGNIQVL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 V++D+AARG+D+ +V HV NFD+P E+Y+HRIGRTGRA R G+A T + K + H+ Sbjct: 302 VSTDVAARGIDVAEVSHVINFDLPLIYEDYVHRIGRTGRANRTGEAITFLTKAEEYHVQK 361 Query: 360 IEKLIEKKV 368 IE++I+ + Sbjct: 362 IERIIKATI 370 >gi|220909835|ref|YP_002485146.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp. PCC 7425] gi|219866446|gb|ACL46785.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7425] Length = 457 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 152/368 (41%), Positives = 221/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGLSP V + G+ +PTPIQI+ IP +L DV G AQTGTGKTA+F LP+L Sbjct: 3 LSFSQLGLSPARVQRLEALGFNEPTPIQIQAIPPLLAGRDVIGQAQTGTGKTAAFALPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LIL PTRELA QV+ + + + + V + GG E Q ++L Sbjct: 63 ERIDTQSPAVQ---ALILTPTRELAVQVSQSIYNFKADPKIRVLAIYGGQAIERQIERLH 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA VL+ TPGR+LD NRG L +N + LV+DEAD MLDMGF+P ++ I S P RQ Sbjct: 120 KGAQVLVGTPGRVLDLLNRGVLNLNALAWLVLDEADEMLDMGFMPDVKQILSQAPAQRQM 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM + +++ FL++P+ I V P + IE +SK L QL+ Sbjct: 180 AFFSATMAPPVYRLATQFLRSPETITVEHPKAAPSRIEQVAYKVPRGWSKSTTL--QLVL 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ IIF +K L L+ G+SV HG++ Q R ++L F++G I+ +V Sbjct: 238 EMEDPESAIIFVRTRKVAAELTSQLQSHGYSVDEYHGDLSQSQRERLLQRFRQGQIRWVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGL + D+ HV N+D+P+ E+Y+HRIGRTGRAG+ G A +L + + I Sbjct: 298 ATDIAARGLHVDDLTHVINYDLPDSVESYVHRIGRTGRAGKTGIAVSLFQPLERHKLGQI 357 Query: 361 EKLIEKKV 368 E+ I +K+ Sbjct: 358 ERHIRQKL 365 >gi|254369445|ref|ZP_04985457.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp. holarctica FSC022] gi|157122395|gb|EDO66535.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp. holarctica FSC022] Length = 441 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 157/398 (39%), Positives = 248/398 (62%), Gaps = 8/398 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DLGL+ + A+ GY KPTPIQ + IP+VL+ +DV AQTGTGKTA F LP++ Sbjct: 1 MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ +A+ +TLIL PTRELAAQ+ + + Y N ++ ++ GG+ Q KL Sbjct: 61 QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSGVIFGGVSINPQMMKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++LI TPGR+LD +++ + +++ V+DEADRMLDMGFI ++ I +L+P Q Sbjct: 121 RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT + E++ ++ FL NP+ + + ++T + I + T + +K AL+ L+ Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQK-IYTLDKSNKINALI-SLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ + ++F K + L G S AIHGN Q +R K L++FK I ++ Sbjct: 239 KDQN-LHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N D+ N AE+Y+HRIGRTGRAG+ G A +LV+ ++++ + Sbjct: 298 VATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSN 357 Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE LI + + L G ++ N P+ ++ N A+K Sbjct: 358 IEHLIGHLLPREELEGFEATHNVPIT--SMSHKNKAKK 393 >gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae 7-10-1-b] Length = 445 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 157/418 (37%), Positives = 241/418 (57%), Gaps = 19/418 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS + AV GY PTP+Q + IPL L+ DV A TGTGKT +F LP++ Sbjct: 37 FQDLGLSETTLAAVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIER 96 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ + + PR L++ PTRELA Q+ + K L V ++GG+P++ Q KL RG Sbjct: 97 IDRAK-KPGSPRALVVSPTRELALQIDAACTQLAKGSGLRVVTVVGGVPYKGQLSKLSRG 155 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+L+ TPGR+ D RG + + ++EILV+DEADRMLDMGF P ++ I + P +RQTLL Sbjct: 156 VDILVATPGRLHDLMERGDVKLRDVEILVLDEADRMLDMGFWPTMKKIVAATPSSRQTLL 215 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++ + L++P +EV T++TIE V + +K +LL+ LL + Sbjct: 216 FSATLDRKVMQSVSAILRDPAFVEVAHKGETSDTIEQFIVPVGSM--QKASLLRLLLAER 273 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + K I+F + K L++ GF +IH + Q R + L+ F +G + ++VA+ Sbjct: 274 GS-KRVIVFTDTKTRAEICTGQLKRAGFRAESIHSDKTQAQRKRALAAFSKGDVDVLVAT 332 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+ ARG+D+PD+ +V N+++P ++Y+HRIGRTGRAG G + + V+ E + IEK Sbjct: 333 DVLARGIDVPDIAYVVNYELPENPDDYVHRIGRTGRAGEAGCSISFVSPEAKAQLLDIEK 392 Query: 363 LIEKKV--------DWLNGDLSSLNPPLEKIDIAQHNHAR--KNNPIPQKSTGFDRRK 410 L+ K+ D + + N + K +R + NP TGF RR+ Sbjct: 393 LLGSKIPTLAVEGYDATEAERALANRFVSKTTRGSAAFSRSLRRNP-----TGFGRRR 445 >gi|311087784|gb|ADP67863.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 601 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 235/367 (64%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL+P ++ ++ + GYVKP+PIQ IPL+L+ DV G+AQTG+GKTA+F LP+L Sbjct: 8 FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L ++ P+ L+L PTRELA QVA+ F + K + V L GG +E Q + L + Sbjct: 68 LN---INLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S+ F++NPK I++ + +T I+ + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSY---WMVYGRKTDALIRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K G + +++A Sbjct: 242 ED-FSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 301 TDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 362 KLIEKKV 368 + +++ + Sbjct: 361 RTMKQSI 367 >gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577] gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577] gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 502 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 234/384 (60%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ +G+ + TPIQ +TIP+VL DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLSDSLLSAISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ V+ LI+ PTRELA Q + + GK+ V ++ GG Q L+ Sbjct: 61 QHLDFNNPNVQ---ALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGRILDH +R L + +++ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 118 SHPQIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++V F+++P ++++ T + I+ +V + +K + + Sbjct: 178 LLFSATMPPQIKRVGVQFMKDPHQVKIKAKELTTDLIDQYYVR--VKEYEKFDTMTRFFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD + I+FC K+ V + LE +G++ +HG++ Q R +I++ FK+G + ++V Sbjct: 236 VQDP-EVTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI V HV+N+D+P + Y+HR+GRTGRAG+HG + T ++ ++ I Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 EKL KV L L PP E+ Sbjct: 355 EKLT--KVRML-----PLKPPTEQ 371 >gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii ATCC 8290] gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii ATCC 8290] Length = 502 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 234/384 (60%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ +G+ + TPIQ +TIP+VL DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLSDSLLSAISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ V+ LI+ PTRELA Q + + GK+ V ++ GG Q L+ Sbjct: 61 QHLDFNNPNVQ---ALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGRILDH +R L + +++ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 118 SHPQIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++V F+++P ++++ T + I+ +V + +K + + Sbjct: 178 LLFSATMPPQIKRVGVQFMKDPHQVKIKAKELTTDLIDQYYVR--VKEYEKFDTMTRFFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD + I+FC K+ V + LE +G++ +HG++ Q R +I++ FK+G + ++V Sbjct: 236 VQDP-EVTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI V HV+N+D+P + Y+HR+GRTGRAG+HG + T ++ ++ I Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 EKL KV L L PP E+ Sbjct: 355 EKLT--KVRML-----PLKPPTEQ 371 >gi|56478694|ref|YP_160283.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1] gi|56314737|emb|CAI09382.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1] Length = 658 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 227/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L ++ A+ + GY P+PIQ IP +L HD+ G AQTGTGKTA+F LP+L Sbjct: 46 FAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLDR 105 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ V+ P+ L+L PTRELA QVA+ F++Y KN V + GG Q ++L R Sbjct: 106 LDLA---VKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLAR 162 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++++ LV+DEAD ML MGFI ++ I P RQT Sbjct: 163 GAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTA 222 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQLL 239 LFSATM D +++V+ +L+ P+ +++ ++T T +C ++ + K L ++L Sbjct: 223 LFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISV----AHKLDALTRIL 278 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ IIF K V L LE +G+S A++G++ Q+ R +++ K G + ++ Sbjct: 279 EVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIV 338 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E Y+HRIGRTGRAGR G A VA +++ + Sbjct: 339 VATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKV 398 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ L Sbjct: 399 IERATRQPIEALQ 411 >gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum 255-15] Length = 530 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 231/366 (63%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS ++ VL G+ + TPIQ +TIP+ L D+ G AQTGTGKTA+F +P + Sbjct: 4 FRELNLSEALIKGVLKMGFEEATPIQAETIPVGLSGVDLIGQAQTGTGKTAAFGIPTIER 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ A+ R + LIL PTRELA QVA+ + G+ + + GG + Q + L + Sbjct: 64 LD---AKSRYIQALILAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQIRALRKN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH NR L +++++ +++DEAD ML+MGF+ I+ I +P TRQTLL Sbjct: 121 PQIVVATPGRLMDHMNRKTLNLDHVQTVILDEADEMLNMGFVEDIEKILGTLPPTRQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++K+++ F+ P I+V T E I+ F+ + S+K +L +L+ + Sbjct: 181 FSATMPPQIRKIADRFMTTPTHIKVKAKEMTVENIDQSFIE--LKESQKFDVLCRLIDT- 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D+ + IIF KK V + L ++G++ +HG++ Q R +++ FK+GTI ++VA+ Sbjct: 238 DSPELSIIFGRTKKRVDEMTEGLIQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAG+ G A T V + I IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKTIER 357 Query: 363 LIEKKV 368 + KK+ Sbjct: 358 VTNKKM 363 >gi|238749853|ref|ZP_04611357.1| ATP-dependent RNA helicase rhlE [Yersinia rohdei ATCC 43380] gi|238711782|gb|EEQ03996.1| ATP-dependent RNA helicase rhlE [Yersinia rohdei ATCC 43380] Length = 450 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 164/400 (41%), Positives = 244/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYEVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLSQNQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ TPGR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PARRQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831] gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831] Length = 495 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 227/369 (61%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+S ++ A+ G+ + TPIQ +TIP L+ HDV G AQTGTGKTA+F +P++ Sbjct: 4 FNELGVSAPIMKALEKMGFEEATPIQAETIPHALEGHDVIGQAQTGTGKTAAFGIPLIN- 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 K A++R + LI+ PTRELA QVA+ + K ++ + GG P + Q + L+ G Sbjct: 63 --KINAKLRKVQGLIVAPTRELAIQVAEEINRLAKFKSVRALAIYGGQPMDRQIRALKDG 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH R + ++ + V+DEAD ML+MGFI I+ I +P RQTLL Sbjct: 121 PQIVVATPGRLLDHMRRKTIRIDQVHTAVLDEADEMLNMGFIDDIREILKGIPEERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++ ++ ++ PK ++V T E I+ F+ +Y K L L Sbjct: 181 FSATMPKEIRNIATTLMKEPKEVKVKAKEMTVENIDQYFIEIPEKY--KFDTLNNHLDI- 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ + IIF KK V + L+ +G+ IHG++ Q RM +L FK+G + ++VA+ Sbjct: 238 NSPELAIIFARTKKRVDEVAEGLQARGYRSEGIHGDLTQGKRMSVLKKFKQGRVDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G+A + + ++ H++ IE+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGEAISFITPREMAHLNLIEQ 357 Query: 363 LIEKKVDWL 371 + K+ + Sbjct: 358 TTKSKMKRM 366 >gi|148973895|ref|ZP_01811428.1| RhlE [Vibrionales bacterium SWAT-3] gi|145965592|gb|EDK30840.1| RhlE [Vibrionales bacterium SWAT-3] Length = 401 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 230/373 (61%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V AV GY KPT IQ K IP+VL ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R + R +IL PTRELA QV N +KY K NLT + GG+ ++ Q +L Sbjct: 61 EMLSKGETQRKKRIRAVILTPTRELAVQVEQNIKKYAKFLNLTSLAMYGGVSYQHQKDRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR++D + + + + +E+LV+DEADRMLDMGFI I I + +P Q Sbjct: 121 IEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQDVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ ++ ++++ + + + I + ++ IE V +K ALL ++ Sbjct: 181 NLLFSATLSTPVRALAKSAISDAEEISIAKTDASKANIEQWLVTV--DKDRKSALLSHMI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ +IF K L LEK+G A H Q R KIL++FK+G ++ + Sbjct: 239 -TEGNWDQALIFIETKHGAAKLVAQLEKRGIQAEAFHSGRSQAIREKILADFKKGHLKFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A++Y+HRIGRTGRA G+A + ++K++ K++ Sbjct: 298 VATGVAARGIDIDNLPRVVNYDMPFPADDYVHRIGRTGRADATGEAISFLSKDNFKNLCI 357 Query: 360 IEK----LIEKKV 368 IEK LIE++V Sbjct: 358 IEKRLGHLIERRV 370 >gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1] Length = 532 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 148/361 (40%), Positives = 223/361 (61%), Gaps = 6/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L ++V + + G+ +PTPIQ +P VL +D+ G AQTGTGKTA+F +PM+ Sbjct: 10 FGNLELDRRIVDGLKEMGFEEPTPIQQLAVPQVLAGYDMIGQAQTGTGKTAAFSIPMI-- 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E+ R R +T+I+ PTRELA QVA+ K G+ + V + GG E Q + L G Sbjct: 68 -ERLNPRKREVQTIIITPTRELAIQVAEEISKIGRFSRIKVLPIYGGQSIERQIRSLRLG 126 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH R L ++ ++++++DEAD MLDMGFI I+ I P RQTLL Sbjct: 127 VQVVVGTPGRLLDHLRRQTLKVDQVDMVILDEADEMLDMGFIEDIEEIIRHTPAERQTLL 186 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ ++++ ++ +PK + V+ + T IE F A K L ++L Sbjct: 187 FSATMPQEIIRLAQQYMTDPKYVTVSKTNLTVPQIEQVFYE--APEKNKLEALCRILDIS 244 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + GI+FC K+ V L L+ +GF+ A+HG++ Q+ R ++ F+ ++L+VA+ Sbjct: 245 D-ISQGILFCRTKRGVDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSEVELLVAT 303 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV N+D+P E Y+HRIGRTGRAGR G A T+++ + + + IE Sbjct: 304 DVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIISPREYRQLRQIEN 363 Query: 363 L 363 + Sbjct: 364 I 364 >gi|119773524|ref|YP_926264.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B] gi|119766024|gb|ABL98594.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B] Length = 464 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 164/423 (38%), Positives = 247/423 (58%), Gaps = 18/423 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL+P + A+ Y +PT IQ K IP+ L ++ AQTGTGKTA+F LP++ Sbjct: 1 MSFARLGLAPAITSALESLNYQQPTEIQQKAIPVALSGRNLLAAAQTGTGKTAAFGLPLI 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R +IL PTREL QVADN Y N LTV + GG+ +AQ + L Sbjct: 61 ERLSQGKTERKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+ D +++ + I++LV+DEADRMLDMGFI I ++ S +P RQ Sbjct: 121 IAGVDILVATPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRMPTNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ ++++++ + +P I + PS + I V K ALL L+ Sbjct: 181 NLLFSATLSPRIRELAKTAVPDPVEIAIAKPSK--KEISQWLVTV--DKDTKSALLSHLI 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q++ + +IF K L LEK+G A H Q R ++LS FK+G++Q + Sbjct: 237 QTEQ-WQQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSLQYL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+D+ + V N+D+P + YIHRIGRTGRAG G+A +L++K+D K++ Sbjct: 296 VATGVAARGIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLLSKDDFKNLCM 355 Query: 360 IEK----LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD-RRKKNYS 414 IE +IE++V + G P + I ++ ++ K+ P Q S+ +R S Sbjct: 356 IESRLGHVIERRV--IEG-----FEPKKPIPVSILDYKPKSQPKAQPSSELSPQRNSQPS 408 Query: 415 SQK 417 SQ+ Sbjct: 409 SQR 411 >gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis H37Rv] gi|15840699|ref|NP_335736.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis CDC1551] gi|148661040|ref|YP_001282563.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra] gi|148822470|ref|YP_001287224.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis F11] gi|215403092|ref|ZP_03415273.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis 02_1987] gi|215410888|ref|ZP_03419696.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis 94_M4241A] gi|215445431|ref|ZP_03432183.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis T85] gi|218752952|ref|ZP_03531748.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis GM 1503] gi|253799702|ref|YP_003032703.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 1435] gi|254231510|ref|ZP_04924837.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis C] gi|254550260|ref|ZP_05140707.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554958|ref|ZP_06444168.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 605] gi|289744998|ref|ZP_06504376.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis 02_1987] gi|289757351|ref|ZP_06516729.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85] gi|289761405|ref|ZP_06520783.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis GM 1503] gi|297633802|ref|ZP_06951582.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 4207] gi|297730788|ref|ZP_06959906.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN R506] gi|298524756|ref|ZP_07012165.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306775422|ref|ZP_07413759.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu001] gi|306781666|ref|ZP_07420003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu002] gi|306788337|ref|ZP_07426659.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu004] gi|306792663|ref|ZP_07430965.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu005] gi|306797070|ref|ZP_07435372.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu006] gi|306802950|ref|ZP_07439618.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu008] gi|306807140|ref|ZP_07443808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu007] gi|306967339|ref|ZP_07480000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu009] gi|306971531|ref|ZP_07484192.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu010] gi|307079244|ref|ZP_07488414.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu011] gi|307083813|ref|ZP_07492926.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu012] gi|313658120|ref|ZP_07815000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN V2475] gi|1706338|sp|Q11039|DEAD_MYCTU RecName: Full=Cold-shock DEAD box protein A homolog; AltName: Full=ATP-dependent RNA helicase deaD homolog gi|1480333|emb|CAB00899.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent RNA helicase deaD homolog) [Mycobacterium tuberculosis H37Rv] gi|13880887|gb|AAK45550.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis CDC1551] gi|124600569|gb|EAY59579.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis C] gi|148505192|gb|ABQ73001.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra] gi|148720997|gb|ABR05622.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis F11] gi|253321205|gb|ACT25808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 1435] gi|289439590|gb|EFD22083.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 605] gi|289685526|gb|EFD53014.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis 02_1987] gi|289708911|gb|EFD72927.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis GM 1503] gi|289712915|gb|EFD76927.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85] gi|298494550|gb|EFI29844.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216042|gb|EFO75441.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu001] gi|308325627|gb|EFP14478.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu002] gi|308335025|gb|EFP23876.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu004] gi|308338833|gb|EFP27684.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu005] gi|308342518|gb|EFP31369.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu006] gi|308346383|gb|EFP35234.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu007] gi|308350324|gb|EFP39175.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu008] gi|308354954|gb|EFP43805.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu009] gi|308358901|gb|EFP47752.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu010] gi|308362864|gb|EFP51715.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu011] gi|308366530|gb|EFP55381.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu012] gi|323720210|gb|EGB29309.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis CDC1551A] gi|326902876|gb|EGE49809.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis W-148] gi|328459448|gb|AEB04871.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 4207] Length = 563 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 9/361 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P+V+ A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +PML+ Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++P+ L+L PTRELA QVA+ F +YG + L V + GG + Q L R Sbjct: 75 ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++ ++ LV+DEAD ML MGF ++ I S P +Q Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S +L +P + ++ AE I ++ Q ++K L ++L+ Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKMDALTRVLEV 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI G++ Q R + ++ ++G I ++VA Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ ++ + AIE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 362 K 362 K Sbjct: 367 K 367 >gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis H37Ra] Length = 563 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 9/361 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P+V+ A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +PML+ Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++P+ L+L PTRELA QVA+ F +YG + L V + GG + Q L R Sbjct: 75 ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++ ++ LV+DEAD ML MGF ++ I S P +Q Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S +L +P + ++ AE I ++ Q ++K L ++L+ Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QVARKMDALTRVLEV 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI G++ Q R + ++ ++G I ++VA Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ ++ + AIE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 362 K 362 K Sbjct: 367 K 367 >gi|59800607|ref|YP_207319.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090] gi|194097783|ref|YP_002000826.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae NCCP11945] gi|239998282|ref|ZP_04718206.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02] gi|240013464|ref|ZP_04720377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18] gi|240015903|ref|ZP_04722443.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140] gi|240080042|ref|ZP_04724585.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19] gi|240112252|ref|ZP_04726742.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11] gi|240114997|ref|ZP_04729059.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18] gi|240117282|ref|ZP_04731344.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1] gi|240120536|ref|ZP_04733498.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1] gi|240122833|ref|ZP_04735789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332] gi|240125029|ref|ZP_04737915.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679] gi|240127543|ref|ZP_04740204.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|254493059|ref|ZP_05106230.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291] gi|260441187|ref|ZP_05795003.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2] gi|268594137|ref|ZP_06128304.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268596188|ref|ZP_06130355.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268598313|ref|ZP_06132480.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11] gi|268600665|ref|ZP_06134832.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18] gi|268602977|ref|ZP_06137144.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1] gi|268681449|ref|ZP_06148311.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332] gi|268683617|ref|ZP_06150479.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679] gi|268685920|ref|ZP_06152782.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|291044521|ref|ZP_06570230.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293397657|ref|ZP_06641863.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62] gi|59717502|gb|AAW88907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090] gi|193933073|gb|ACF28897.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae NCCP11945] gi|226512099|gb|EEH61444.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291] gi|268547526|gb|EEZ42944.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268549976|gb|EEZ44995.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268582444|gb|EEZ47120.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11] gi|268584796|gb|EEZ49472.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18] gi|268587108|gb|EEZ51784.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1] gi|268621733|gb|EEZ54133.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332] gi|268623901|gb|EEZ56301.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679] gi|268626204|gb|EEZ58604.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|291011415|gb|EFE03411.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611603|gb|EFF40672.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62] gi|317163562|gb|ADV07103.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae TCDC-NG08107] Length = 457 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 161/423 (38%), Positives = 253/423 (59%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKAEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+YIHRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYIHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 +AI++L K+ +E+I+ + + P+K+ + R++N Y S Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409 Query: 417 KSH 419 ++ Sbjct: 410 RAQ 412 >gi|296129739|ref|YP_003636989.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] gi|296021554|gb|ADG74790.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] Length = 581 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 218/361 (60%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL P+V+ AV G+ PTP+Q +TIP +L DV G+AQTGTGKTA+F LP+L Sbjct: 17 FADLGLDPRVLSAVHGLGFTAPTPVQAQTIPALLAGRDVVGVAQTGTGKTAAFGLPLLQS 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ A V++ ++L PTRELA QVAD + + L V + GG P+ Q + L R Sbjct: 77 VDPDVAAVQV---VVLTPTRELAMQVADALTSFAADMPGLQVVAVYGGSPYLPQQRALAR 133 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +R L ++++ +LV+DEAD ML MGF + + S P RQ Sbjct: 134 GAQVVVGTPGRVIDHIDRRTLRLDDVRMLVLDEADEMLRMGFAEDVDKVLSGTPAGRQVA 193 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++V++ L NP + V+ SST E++ + Y K L ++L Sbjct: 194 LFSATMPPQIRRVADQHLVNPVSVAVSRQSSTVESVRQTY--AVVPYRHKAGALARVLAV 251 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D I+F ++ + + L ++G + I G++ Q R +I+ + GT+ ++VA Sbjct: 252 SDA-DAAIVFVRTREAAEEIGNVLVQRGIAAAHISGDVAQADRERIVERLRSGTLDVLVA 310 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N D+P E Y+HRIGRTGRAGR G+A T V + + IE Sbjct: 311 TDVAARGLDVERIGLVVNLDLPREPEAYVHRIGRTGRAGRTGEALTFVTPSERPRLRQIE 370 Query: 362 K 362 + Sbjct: 371 R 371 >gi|145299222|ref|YP_001142063.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851994|gb|ABO90315.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp. salmonicida A449] Length = 463 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 163/366 (44%), Positives = 238/366 (65%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLSP ++ AV + GY +PTPIQ + IP VL DV G AQTGTGKTA F LPML Sbjct: 1 MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPML 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L GR R R L+L PTRELAAQV ++ KY + + GG+ + + Sbjct: 61 HRLMANHGRGGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLEA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++ G D+L+ TPGR+LD + L + +E+LV+DEADRMLDMGFI I+ I +P R Sbjct: 121 IKLGVDILVATPGRLLDLLTQRALTLTELEVLVLDEADRMLDMGFITDIRRIMKALPEER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT ++E+++++++ L++P IEV+ +STAE + + +K LL + Sbjct: 181 QTLLFSATFSNEIKELADDLLKSPTLIEVSPSNSTAEQVNQRIIKV--DRERKRELLSHM 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ + ++F K+ L H +EK G + AIHG+ Q +R + L++F+EG +++ Sbjct: 239 I-GRNNWQRVLVFVRTKQIADRLAHQMEKDGLNTVAIHGDKSQGARNRALADFREGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV NF++P AE+YIHRIGRTGRAGR G+A +LV++++ + Sbjct: 298 LVATDIAARGLDIDQLPHVINFELPQVAEDYIHRIGRTGRAGRGGEAISLVSQDEQDQLK 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIESLI 363 >gi|91228876|ref|ZP_01262779.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio alginolyticus 12G01] gi|91187564|gb|EAS73893.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio alginolyticus 12G01] Length = 419 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 152/385 (39%), Positives = 239/385 (62%), Gaps = 6/385 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++FADLG+ K++ + + V PTP+Q K+IP VL ++ AQTGTGKTA+F LP++ Sbjct: 3 VNFADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPII 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ + P+ LIL PTRELA QV DN +Y L + + GG Q +KLE Sbjct: 63 QTVQQKKLN-GTPQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+LI TPGR+LDH G + ++ +LV+DEADRMLDMGF P +Q I +P +Q Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++ ++ +++P +EV+ ++TAET+ +K LL L+ Sbjct: 182 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPV--DKKRKRELLAYLIG 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++F K+ L L+ G +I+G+ Q +R + L FK+G ++ ++ Sbjct: 240 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++ + AI Sbjct: 299 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLQAI 358 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLE 383 E L+++++ +WL G SL +E Sbjct: 359 ENLLDQRLPQEWLAGFEPSLVEEVE 383 >gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN] gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN] Length = 495 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 235/384 (61%), Gaps = 17/384 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGLS K++ A+ +GY + TPIQ +TIP+VL DV G AQTGTGKTA+F LP + Sbjct: 6 FSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEH 65 Query: 63 LEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V P + LI+ PTRELA Q + + GK + V ++ GG Q + LE Sbjct: 66 VD-----VENPAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+ DH RG + ++ ++ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 121 KNPQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++ F+ +P+ +++ T + ++ +V A+ +K ++ +++ Sbjct: 181 LLFSATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVR--AKDYEKFDIMTRMID 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F K+ V L L +G++ IHG++ Q R KI+ FKEG + ++V Sbjct: 239 VQDPDLT-IVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P+ ++Y+HRIGRTGRAG HG + T V ++ ++ I Sbjct: 298 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 EKL + + L PP E+ Sbjct: 358 EKLTRAR-------MLPLKPPTEE 374 >gi|15616977|ref|NP_240190.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681730|ref|YP_002468116.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682285|ref|YP_002468669.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471430|ref|ZP_05635429.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386733|sp|P57453|DEAD_BUCAI RecName: Full=Cold-shock DEAD box protein A homolog; AltName: Full=ATP-dependent RNA helicase deaD homolog gi|25403610|pir||D84973 ATP-dependent RNA helicase deaD [imported] - Buchnera sp. (strain APS) gi|10039042|dbj|BAB13076.1| ATP-dependent RNA helicase deaD [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622018|gb|ACL30174.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624573|gb|ACL30728.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086109|gb|ADP66191.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086682|gb|ADP66763.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087268|gb|ADP67348.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 601 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 235/367 (64%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL+P ++ ++ + GYVKP+PIQ IPL+L+ DV G+AQTG+GKTA+F LP+L Sbjct: 8 FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L ++ P+ L+L PTRELA QVA+ F + K + V L GG +E Q + L + Sbjct: 68 LN---INLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S+ F++NPK I++ + +T I+ + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSY---WMVYGRKTDALIRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K G + +++A Sbjct: 242 ED-FSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 301 TDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 362 KLIEKKV 368 + +++ + Sbjct: 361 RTMKQSI 367 >gi|313667868|ref|YP_004048152.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640] gi|313005330|emb|CBN86763.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06] Length = 457 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 161/423 (38%), Positives = 254/423 (60%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 +AI++L K+ +E+I+ + + P+K+ + R++N Y S Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|126728206|ref|ZP_01744022.1| putative ATP-dependent RNA helicase protein [Sagittula stellata E-37] gi|126711171|gb|EBA10221.1| putative ATP-dependent RNA helicase protein [Sagittula stellata E-37] Length = 425 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 222/371 (59%), Gaps = 5/371 (1%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LGL P+++ + D PTPIQ + IP L DV G+AQTGTGKTA+F LP++T + + Sbjct: 2 LGLPPRLLTNLADLNITDPTPIQSQAIPHALNGRDVMGLAQTGTGKTAAFGLPIVTTIMR 61 Query: 66 GRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123 + R + LIL PTRELA Q+ DN Y N + + L+ GG Q +L +G Sbjct: 62 DQTRPGPKQVHGLILAPTRELAKQIVDNLRAYAANTPVKIGLVTGGNSINGQINRLAKGT 121 Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183 D+L+ TPGR++D + + ++ LV+DEAD+MLD+GFI ++ I ++P RQT+LF Sbjct: 122 DLLVATPGRLIDLMEQKAVRLDATRFLVLDEADQMLDLGFIHALRQIARVLPKERQTMLF 181 Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243 SATM ++ +++ +L +P RIEV P E IE + + K LL L Sbjct: 182 SATMPKQMAEIASAYLTDPVRIEVTPPGKPVERIEQSV--HFVEQKAKTPLLVHHLDLHR 239 Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 T + ++F K L LE +GF+ +IHGN Q R + L F+EG + ++VA+D Sbjct: 240 T-EAALVFARTKHGAEKLKRHLEDKGFAAGSIHGNKSQGQRDRALKAFREGELTVLVATD 298 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 +AARG+DIP V +V+N+D+PN A+NY+HRIGRT RAGR G A + E++ AI K+ Sbjct: 299 VAARGIDIPSVRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCSAEEMGEFKAIVKV 358 Query: 364 IEKKVDWLNGD 374 + +++ +G+ Sbjct: 359 MGREIAVASGE 369 >gi|114563324|ref|YP_750837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334617|gb|ABI71999.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 439 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 158/372 (42%), Positives = 229/372 (61%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL +V A+ + GY +PTPIQ +TIP++L+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSTLGLRDTIVNALHEVGYSQPTPIQQQTIPVILKGKNLLAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L R + R LIL PTRELA QV N +Y K+ LT + GG+ + Q + L Sbjct: 61 ERLADTEIQRAKRIRALILTPTRELAVQVHANVVQYAKHLPLTSIAIYGGVDEKPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + +E+LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IDGVDILVATPGRLLDLYTQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIDKLPSERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT++++++ +++ ++ P I V +A IE T KK ALL L+ Sbjct: 181 SLLFSATLSNQVRALAKTAIKRPVEISVIADRDSAPKIEQWL--TTVDKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++ +IF K+ L LEK+ + IH Q R +IL++FK G I+ + Sbjct: 239 KTEE-WNQALIFIETKQGAAKLVSQLEKRDIAAECIHSGRSQPVREQILADFKSGNIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI D+ V N+D+P A++YIHRIGRTGRAG G A + V+ +D K++ Sbjct: 298 VATGIAARGIDIDDLSRVVNYDLPYPADDYIHRIGRTGRAGAAGVAISFVSNDDFKNLCM 357 Query: 360 IEK----LIEKK 367 IE LIE+K Sbjct: 358 IESRLGHLIERK 369 >gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A] gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A] Length = 442 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 152/374 (40%), Positives = 229/374 (61%), Gaps = 8/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGLS +++ + GY KPTPIQ + IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 5 FSELGLSTQILRTISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPILQQ 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L + ++PR LI+ PTRELA QV D+ +Y + + L L+GG ++ Q + L++ Sbjct: 65 LAAEPTKSKLPRALIVIPTRELAQQVQDSVFQYSREFKELYSITLVGGTAYQKQIRALKK 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH G L ++ I LV+DEADRMLDMGF + I P RQT+ Sbjct: 125 GVSIVVATPGRLLDHVREGHLDLSQIRYLVLDEADRMLDMGFSDDMHAIIKQCPQNRQTI 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 + SAT + K++ F N ++I + +S E I + F A K A+L +LL + Sbjct: 185 MSSATWDGNVGKIAAGFTHNAEKIIIAPETSHIEEISY-FTDDQAH---KNAVLDRLL-A 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K + H L + GF +HG++ Q+ R +I+ F+ G I ++VA Sbjct: 240 DEAVTQCIVFTATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRIIERFRNGQINVLVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DIP + HV N+D+P ++E+Y+HRIGR+GRAGR G A LV+ D + IE Sbjct: 300 TDIAARGIDIPAISHVINYDLPRQSEDYVHRIGRSGRAGRSGVALNLVSLTDRAAMAHIE 359 Query: 362 KLIEK--KVDWLNG 373 + +++ K D L G Sbjct: 360 RYLKRAIKTDVLEG 373 >gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase DEAD homolog) [Mycobacterium abscessus ATCC 19977] gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase DEAD homolog) [Mycobacterium abscessus] Length = 598 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 150/367 (40%), Positives = 232/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL ++P+V+ AV D GY P+ IQ TIP +L DV G+AQTGTGKTA+F +P+L+ Sbjct: 25 FADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSK 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + + L+L PTRELA QVA+ F +YG + L V + GG + Q L+R Sbjct: 85 ID---LTSKDTQALVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKR 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L +++++ LV+DEAD ML MGF ++ I + P +Q Sbjct: 142 GAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L +P I+++ +STAE I F+ +K L ++L+ Sbjct: 202 LFSATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQRFIQVAG--PRKMDALTRILEV 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T + I+F K+ + L+ +GF+ AI+G+I+Q R + ++ K GTI ++VA Sbjct: 260 E-TFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + + AIE Sbjct: 319 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIE 378 Query: 362 KLIEKKV 368 K K+ Sbjct: 379 KTTGAKL 385 >gi|227548399|ref|ZP_03978448.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 683 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 231/370 (62%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L V+ AV G+ +P+PIQ +TIPL+++ DV G+AQTGTGKTA+F LP+L+ Sbjct: 106 FEKLDLPDSVIAAVKMVGFEQPSPIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPVLSQ 165 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++R P+ L+L PTRELA QVAD+F+ + + + V + GG + Q L R Sbjct: 166 ID---PQLRHPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQAYGIQLSGLRR 222 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++N+ LV+DEAD ML+MGF ++ I P T+Q Sbjct: 223 GAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPNTKQVA 282 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++K+S+ +L +P + V + + T I ++ + + K + ++L+ Sbjct: 283 LFSATMPNGIRKISKQYLNDPAEVTVKSETRTNTNITQRYL--FTAHRNKLDAITRILEV 340 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K L L +GFS AI+G+I Q+ R + + ++G + ++VA Sbjct: 341 TE-FEAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVA 399 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+D+PN E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 400 TDVAARGLDVERISHVFNYDIPNDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 459 Query: 362 KLIEKKVDWL 371 ++ ++ + Sbjct: 460 RVTNATIEEM 469 >gi|261401858|ref|ZP_05987983.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria lactamica ATCC 23970] gi|269207983|gb|EEZ74438.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria lactamica ATCC 23970] Length = 457 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 161/423 (38%), Positives = 254/423 (60%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 +AI++L K+ +E+I+ + + P+K+ + R++N Y S Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 413 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 166/426 (38%), Positives = 243/426 (57%), Gaps = 21/426 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ + LS +++ + + Y +PT +Q + IP +L D+ AQTGTGKTA+F LP+L Sbjct: 1 MSFSSMALSAELLNVLSELNYSEPTQVQAEAIPAILAGSDLMAGAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRA-----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + ++ + R LIL PTRELA QV +F +YG L A++ GG+ +AQ Sbjct: 61 ERLSQLKSSQTSYELTPVRALILTPTRELALQVHQSFVRYGDGLTLKSAIVYGGVSIDAQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G D+LI TPGR+LDH RG L + + LV DEADRMLDMGF I I +P Sbjct: 121 ADILKAGVDILIATPGRLLDHLRRGSLTLTQLAFLVFDEADRMLDMGFKDEIDAILKQLP 180 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT D + +S+ L++PK IEV ++ A +E A A +K LL Sbjct: 181 KERQTLLFSATFDDGVFNLSKRLLKDPKLIEVGKRNAAAGKVEQRVYAVDA--DRKSELL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ S+ + +IF +K+ L L +G A HG++ Q R K+L FK G Sbjct: 239 CHLILSK-KWRQVLIFSRKKQGADKLAAKLVNEGVKALAFHGDLSQSVREKVLQEFKSGE 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARGLD+ + V N+++P AE+Y+HRIGRTGRAG G A TL ++D Sbjct: 298 LQVLVATDVAARGLDVESLEVVVNYELPFVAEDYVHRIGRTGRAGNSGLAITLYCEDDAL 357 Query: 356 HIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 ++ +E +++ ++ WL G P L K + RKN+ QK R++ Sbjct: 358 LLEEVEAVLDTRLPQQWLEG----FEPDLTK----SVSVTRKNSKSAQKQRA---RRRAT 406 Query: 414 SSQKSH 419 S++S Sbjct: 407 GSKRSR 412 >gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum ATCC 14931] gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum ATCC 14931] Length = 495 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 235/384 (61%), Gaps = 17/384 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGLS K++ A+ +GY + TPIQ +TIP+VL DV G AQTGTGKTA+F LP + Sbjct: 6 FSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEH 65 Query: 63 LEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V P + LI+ PTRELA Q + + GK + V ++ GG Q + LE Sbjct: 66 VD-----VENPAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+ DH RG + ++ ++ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 121 KNPQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++ F+ +P+ +++ T + ++ +V A+ +K ++ +++ Sbjct: 181 LLFSATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVR--AKDYEKFDIMTRMID 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F K+ V L L +G++ IHG++ Q R KI+ FKEG + ++V Sbjct: 239 VQDPDLT-IVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P+ ++Y+HRIGRTGRAG HG + T V ++ ++ I Sbjct: 298 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 EKL + + L PP E+ Sbjct: 358 EKLTRAR-------MLPLKPPTEE 374 >gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1] gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1] Length = 586 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 151/361 (41%), Positives = 225/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + +V+ A+ D GY P+PIQ TIP +L +DV G+AQTGTGKTA+F +P+L+ Sbjct: 13 FADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILSK 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + + P+ L+L PTRELA QVA+ F KY + L V + GG + Q L R Sbjct: 73 IDLTQ---KSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRR 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +G L ++ + LV+DEAD ML MGF ++ I + P +Q Sbjct: 130 GAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVA 189 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S+ ++ +P I + + +STA I +V Q +K L ++L+ Sbjct: 190 LFSATMPGAIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQ--RKLDALTRVLEV 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D + IIF K+ +L L +GFS AI+G+I Q R + + K G + ++VA Sbjct: 248 ED-FEAMIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G+A VA + + AIE Sbjct: 307 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIE 366 Query: 362 K 362 K Sbjct: 367 K 367 >gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090073|sp|Q8K9H6|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName: Full=ATP-dependent RNA helicase deaD homolog gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 601 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 232/367 (63%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL+P ++ ++ GYVKP+PIQ IPL+L+ DV G+AQTG+GKTA+F LP+L Sbjct: 8 FSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L ++ P+ L+L PTRELA QVA+ F + K + V L GG +E Q + L + Sbjct: 68 LN---INLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I S +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S+ F++NP+ I++ + +T I+ + + Y +K L + L+ Sbjct: 185 LFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSY---WMVYGRKTDALIRFLEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K G + +++A Sbjct: 242 ED-FSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 301 TDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 362 KLIEKKV 368 + I + + Sbjct: 361 RTINQTI 367 >gi|319940808|ref|ZP_08015147.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis 3_1_45B] gi|319805690|gb|EFW02471.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis 3_1_45B] Length = 601 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 227/371 (61%), Gaps = 7/371 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DFA+LGLSP++V ++ G+ +PTPIQ IP +L DV G A TGTGKTA+F LP++ Sbjct: 3 DFAELGLSPQLVSSLTALGFEEPTPIQEAAIPAILAGSDVLGQAATGTGKTAAFALPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 G+ P L+L PTREL QV+++F YG++ + V + GG + Q + L+R Sbjct: 63 RWALGK-EPSDPVILVLTPTRELCLQVSESFHSYGRDAGIIVTPIYGGQEYGRQIRSLKR 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR LDH NRG L ++ ++ +V+DEAD MLD+GF + I +P QT Sbjct: 122 GTHVVVATPGRALDHINRGTLKLDAVKAVVLDEADEMLDLGFADELDAIFEALPEGVQTA 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT+ + K+++ L+NP RI + TP A + +A + + A L ++ Sbjct: 182 LFSATLPPRIAKIADEHLKNPVRIAIAKEETPEGEAPRVPQ--IAYIVGRNYRTAALGRI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +D + IIF + V L +L +G+SV A+HG +DQ +R +++ N + G I Sbjct: 240 LDLEDP-ELAIIFARTRNEVDELTEALRVRGYSVEALHGGLDQPTRDRVMRNARSGKIDA 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ ++ HV NF +P E Y+HRIGRTGRAGR G A T++ + +HI Sbjct: 299 IVATDVAARGIDLENLTHVINFGIPASYETYVHRIGRTGRAGRTGTAITILEPREHRHIR 358 Query: 359 AIEKLIEKKVD 369 A+E+ K++ Sbjct: 359 ALERATRSKIE 369 >gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 578 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 233/371 (62%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P+V+ + + GY P+PIQ +TIP +L+ HDV G+AQTGTGKTA+F LP+L+ Sbjct: 4 FDELDLDPRVLQVLSEIGYETPSPIQAQTIPPLLEGHDVMGLAQTGTGKTAAFALPILSR 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + P+ L+L PTRELA QVA+ F++Y + V + GG + Q L+R Sbjct: 64 LD---LDAKTPQALVLAPTRELAIQVAEAFQRYAAHLPGFHVLPIYGGQSYGPQLAGLKR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH N+G L + ++ LV+DEAD ML MGFI ++ I VP RQ Sbjct: 121 GAHVVVGTPGRVIDHLNKGSLDLTGLKNLVLDEADEMLRMGFIEDVETILQSVPEQRQVA 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++K+S+++L P I V T ++TA I ++ K L ++L+ Sbjct: 181 LFSATMPPQIRKISQSYLNEPVEISVKTKTTTATNITQRYIPVRG--PAKLDALTRILEV 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T I+F K+ L L+ +GFS AI+G+I Q +R + + + +EG + ++VA Sbjct: 239 E-TFDAMIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ +E+Y+HRIGRTGRAGR G+A V+ + + +IE Sbjct: 298 TDVAARGLDVERISHVLNYDIPHDSESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSIE 357 Query: 362 KLIEKKVDWLN 372 K + + + Sbjct: 358 KATRQSIGQME 368 >gi|90021156|ref|YP_526983.1| DNA topoisomerase III [Saccharophagus degradans 2-40] gi|89950756|gb|ABD80771.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40] Length = 398 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 161/403 (39%), Positives = 239/403 (59%), Gaps = 7/403 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL ++ A+ D GY PT IQ + IP +L DV AQTGTGKTASFVLP+L Sbjct: 1 MTFSTLGLCDPILQALNDVGYEAPTAIQEQAIPPILAGRDVLAKAQTGTGKTASFVLPIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 T +K R + + LIL PTRELA QV DN YG + +LT ++GG+ E Q KL Sbjct: 61 QTFKDKANRRAKRIKALILVPTRELAIQVEDNIRLYGAHLSLTSMAMVGGVDIEPQKAKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR++D ++ L + +E LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 VEGVDILVATPGRLIDLMHQRALHFDELEFLVLDEADRMLDMGFIGDINKIIERLPERRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT++D+++ +++ + N I + + I V K ALL L+ Sbjct: 181 SLLFSATLSDKVRLLAKTAIVNAVEISIAADKKSTPPITQWLVTV--DKHNKSALLTHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ K +IF K L LEK+G +IH Q R ++L++FK G I + Sbjct: 239 -NENGWKQALIFIRTKHGAAKLVTQLEKRGIKAESIHSGRSQAVRTQLLADFKAGKIGFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI D+ V N+D+P+ A +Y+HRIGRTGRAG G+A +L++ +D K + A Sbjct: 298 VATGIAARGIDIDDLDRVVNYDLPDDAHDYVHRIGRTGRAGVSGEAVSLISMDDFKRLCA 357 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 IE + +D +++ ++++ I+ N+ +K+ PQ+ Sbjct: 358 IESRLGHIID--RKEVAEFK-AVKEVPISILNYVKKSAKKPQR 397 >gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 432 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 164/421 (38%), Positives = 249/421 (59%), Gaps = 15/421 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL + + A+ +AGY PTPIQ ++IP +L+ D G AQTGTGKTA+F +P+L Sbjct: 1 MLFKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVL 60 Query: 61 TILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + K + + RT LIL PTRELA Q+ +NF Y K+ N+ ++ GG+ + Q + Sbjct: 61 QNIAKNQNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+LI TPGR+LD ++ + ++N++ V+DEADRM DMG + ++ I + +P Sbjct: 121 ILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSATM E++ + + L++P ++EV SST +TI + K +LL Sbjct: 181 RQNLLFSATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVY--FVTKKDKKSLLVH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + ++K+ ++F K N+ L K G AIHGN Q +R LSNFKEG I+ Sbjct: 239 LLKDE-SIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ + HV N+D+P+ E Y+HRIGRTGRAG G A + ++ + Sbjct: 298 VLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSAL 357 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQ 416 IEK I K + + N E+I I + RK +K+T +++ K+N+ Sbjct: 358 KDIEKTIGKNIPVMK------NVEFERIAITREPAQRKE--ADKKTTDANKKPKRNWYGD 409 Query: 417 K 417 K Sbjct: 410 K 410 >gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium linens BL2] Length = 606 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL P V+ AV GY PTPIQ +TIP +++ DV G+AQTGTGKTA+F LP L+ Sbjct: 15 FSELGLHPLVLQAVQAQGYETPTPIQAETIPALVEGRDVIGLAQTGTGKTAAFALPALSD 74 Query: 63 L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L E GRA P L+L PTRELA QVA+ F Y N + +V + GG + Q L+ Sbjct: 75 LAEAGRAN-DGPFALVLTPTRELAIQVAEAFTSYATNLDDFSVLPIYGGQAYGPQLSGLK 133 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA V++ TPGR++DH +G L + ++ L++DEAD ML MGF I+ I S +RQ Sbjct: 134 RGAQVVVGTPGRVIDHLKKGSLKLGSLRHLILDEADEMLKMGFAEDIEEIFSQSGDSRQV 193 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM + +++ +L NPK + V + S T I + Q+S K L ++L+ Sbjct: 194 ALFSATMPTSIHRLTGKYLNNPKEVRVASKSQTGSNIRQRY--HMVQHSHKLDALTRILE 251 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + I+F K+ L L +GF AI+G+I Q++R + + + G + ++V Sbjct: 252 VEE-YEGIIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILV 310 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P+ E+Y+HRIGRTGRAGR G+A V + + + +I Sbjct: 311 ATDVAARGLDVERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAILFVTPREQRLLGSI 370 Query: 361 EKLIEKKVDWL 371 E+ ++KV+ L Sbjct: 371 ERATKQKVEQL 381 >gi|32477297|ref|NP_870291.1| ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH 1] gi|32447848|emb|CAD77366.1| putative ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH 1] Length = 485 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 157/386 (40%), Positives = 225/386 (58%), Gaps = 20/386 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL+ ++ + AGY PTPIQ ++IP +L +DV G AQTGTGKTA+F LP+L I Sbjct: 4 FEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPILQI 63 Query: 63 LEKGRARVRMPR-------------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109 + + R P TL+L PTREL+AQ+ NF YGK L ++ GG Sbjct: 64 MWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVIFGG 123 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 + Q ++L+ G D L+ TPGR+LD N+G + + ++EILV+DEAD MLDMGF+P ++ Sbjct: 124 VNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPDVKR 183 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQ 227 I +P RQ LLFSATM ++K+++ L +P I++ T E IE CFVA Sbjct: 184 ILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVA---- 239 Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 + K LL ++++ T ++F K + L K G AIHGN Q +R++ Sbjct: 240 QADKPRLLNHFIETKATGST-LVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRT 298 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L+ FK + ++VA+D+AARG+DI + V N+D PN E Y+HRIGRTGRAGR G+ Sbjct: 299 LNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVM 358 Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNG 373 + K AIE+ I+ ++ G Sbjct: 359 FCGGHETKFFIAIEREIKLQIPVATG 384 >gi|296314358|ref|ZP_06864299.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC 43768] gi|296838913|gb|EFH22851.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC 43768] Length = 457 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 160/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-IPQVIVFCKTKQSVDQVTRDLIRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 +AI++L K+ +E+I+ + + P+K+ + R++N Y S Sbjct: 362 EAIKELTGNKL------------LIERIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus antri DSM 16041] gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus antri DSM 16041] Length = 512 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 145/363 (39%), Positives = 229/363 (63%), Gaps = 6/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F++LGLS ++ A+ +GY + TPIQ +TIP+VL+ DV G AQTGTGKTA+F LP++ Sbjct: 15 LNFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 74 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ LI+ PTREL Q + + GK+ ++ V ++ GG Q K L+ Sbjct: 75 EHVDTDNPNIQ---ALIISPTRELVIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 131 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +L+ TPGR+ DH NR + + +I+ LV+DEAD ML+MGF+ I+ I P RQT Sbjct: 132 HHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAERQT 191 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++ E F+ +P+ + + T + ++ +V A+ +K ++ +L+ Sbjct: 192 LLFSATMPPEIKRIGEQFMTDPETVRIKAKELTTDLVDQYYVR--ARDYEKFDIMTRLID 249 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F K+ V L L +G++ IHG++ Q R KI+ FK G + ++V Sbjct: 250 VQDPDLT-IVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKHGDLDILV 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P+ ++Y+HRIGRTGRAG HG + T V +++++ I Sbjct: 309 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEI 368 Query: 361 EKL 363 EKL Sbjct: 369 EKL 371 >gi|207725326|ref|YP_002255722.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] Length = 633 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 153/388 (39%), Positives = 233/388 (60%), Gaps = 23/388 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++V A+ + Y PTP+Q + IP L D+ +QTG+GKTA+F+LP + Sbjct: 64 FAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 123 Query: 63 L----EKGRARV---------RMPRT-------LILEPTRELAAQVADNFEKYGKNYNLT 102 + E R RV R PR L+L PTRELA QV +YG++ Sbjct: 124 ISEQPEPQRPRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 183 Query: 103 V-ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161 V A ++GG+P+ Q L R D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM Sbjct: 184 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 243 Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221 GF I+ I P +RQ L+FSATM +++++E ++ P+RIE+ IE Sbjct: 244 GFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERL 303 Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 T S K LL LL+ ++K I+F K++ +L L + GF+ A+HG++ Q Sbjct: 304 HFT-DDMSHKQQLLDHLLRDA-SLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQ 361 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 +R + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR Sbjct: 362 GARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 421 Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 G A LV D IE+ ++++++ Sbjct: 422 SGIAINLVNHGDTFQWRRIERFVDRRIN 449 >gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus hydrogenoformans Z-2901] gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus hydrogenoformans Z-2901] Length = 430 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 155/367 (42%), Positives = 227/367 (61%), Gaps = 7/367 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LGL ++ AV D G+ PTPIQ + IPL+L+ H++ G A TGTGKTA+++LP+L Sbjct: 3 EFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++G+ + LI+ PTRELA QVAD K GK + + GG E Q + L + Sbjct: 63 RIQRGKK----AQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQ 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +V++ TPGRILDH R I+I+++DEAD MLDMGFI I+ I + + +QTL Sbjct: 119 GVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ + + FL K +++ T I + ++K L +L S Sbjct: 179 LFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYEL--PETEKIEGLVSILNS 236 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ I+FC KK V + L +G++ +HG++ QR R + + +FK G +L+VA Sbjct: 237 ELPIQ-AIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDIPDV HV NFD+P E+YIHRIGRTGRAGR GKA TL+ + K + AIE Sbjct: 296 TDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIE 355 Query: 362 KLIEKKV 368 + I K++ Sbjct: 356 EAINKRL 362 >gi|312885453|ref|ZP_07745092.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM 18603] gi|311302033|gb|EFQ79063.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM 18603] Length = 450 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 235/371 (63%), Gaps = 11/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D + +++ A+ DAGY + TP+Q K IP ++ DV GIAQTGTGKTA+++LP++ Sbjct: 5 FEDFNFNRQILNAIADAGYTEATPVQQKAIPPIMNGQDVMGIAQTGTGKTAAYMLPIIMR 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ A+ R +++ PTRELA Q+ +N +++ K +L + L GG+ + Q + +++G Sbjct: 65 LK--YAQGSDARAIVIAPTRELALQIEENAKEFAKYTDLRIVSLYGGLGPKTQKELMDKG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR +D + G ++ +E+LV+DEAD+M+DMGF+P I I +VP RQ LL Sbjct: 123 VDIIVATPGRFMDVYLTGHMVTKKLEVLVLDEADKMMDMGFMPQINRILEVVPRKRQNLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM+D++Q++S NFL+ P +EV ++ A+T+ K LL++LL + Sbjct: 183 FSATMSDKIQELSSNFLEFPTVVEVTPQATPAQTVNQVLYHV-PNMKTKINLLKKLLDAP 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSL-----EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 D +K IIFC + ++ L EK+ V +H N Q +R+ ++ FK ++ Sbjct: 242 DDIKKLIIFCKTRVAAEDVYKFLLRKFGEKE---VRVLHANKGQNTRINAINAFKNDEVK 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+A+RG+D+ DV HV NFDVP E+Y+HRIGRTGRA + G+A T + +I Sbjct: 299 ILVATDVASRGIDVSDVSHVINFDVPVVYEDYVHRIGRTGRAFQSGEAITFCNPAEEYYI 358 Query: 358 DAIEKLIEKKV 368 IEKLI +++ Sbjct: 359 RKIEKLIRQQI 369 >gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC 49030] gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC 49030] Length = 586 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 226/371 (60%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L +V AV D GY P+PIQ KTIP +LQ DV G+AQTGTGKTA+F LP+L+ Sbjct: 16 FSDFDLDERVARAVADLGYESPSPIQAKTIPFLLQGRDVIGLAQTGTGKTAAFALPLLSS 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + GR R P LIL PTRELA QVA+ Y + + +V + GG + Q L+R Sbjct: 76 I-AGRERPTSPLALILAPTRELAIQVAEALTSYATHLGDFSVLPIYGGQSYTPQISGLKR 134 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L ++++E LV+DEAD ML MGF I+ I + RQ Sbjct: 135 GAHVVVGTPGRVIDHIKRGTLDLSHVEHLVLDEADEMLKMGFQEDIEEIFAKTNPDRQVA 194 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ +L +P + + ++T+ I ++ +S K L ++L+ Sbjct: 195 LFSATMPASIHRITGQYLNDPAEVRIQAKTTTSANIRQRYLTVM--HSHKLDALTRILEV 252 Query: 242 QDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +GII F K+ L L+ +GFS AI+G+I Q R + + + G+I ++V Sbjct: 253 EKY--DGIIMFVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILV 310 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P+ E+Y+HRIGRTGRAGR G+A V + + + AI Sbjct: 311 ATDVAARGLDVERISLVVNFDIPHDTESYVHRIGRTGRAGRTGEAILFVTPRENRLLKAI 370 Query: 361 EKLIEKKVDWL 371 EK +KV+ L Sbjct: 371 EKATRQKVEPL 381 >gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335] gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335] Length = 570 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 225/371 (60%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P V+ A+ DAGY PTPIQ TIP +L D+ G AQTGTGKTA+F LP+L+ Sbjct: 8 FQTLSLIPPVLKALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPILSQ 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L+L PTRELA QVA+ F+ Y + V + GG + Q K+L R Sbjct: 68 IDISNSD---PQALVLAPTRELALQVAEAFQSYASHLKGFHVLPIYGGQSYHVQLKQLRR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 A V++ TPGR++DH RG L ++N++ LV+DEAD ML MGFI ++ + S P +RQ Sbjct: 125 AAHVIVGTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEWVISQTPQSRQVA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+++ +L +P+ + V S TA+TI F + K L ++L+ Sbjct: 185 LFSATMPAAIRKIAQKYLNSPQELAVKNQSKTADTIRQRFWPVSGYH--KLDALTRILEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K V L LE +G++ + G++ Q R + + ++G + ++VA Sbjct: 243 ED-FDGMIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 302 TDVAARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLSSIE 361 Query: 362 KLIEKKVDWLN 372 + ++++ + Sbjct: 362 RSTRQRIERME 372 >gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R] gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R] Length = 729 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 150/361 (41%), Positives = 224/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL +V+ AV GY P+PIQ +TIP++++ DV G+AQTGTGKTA+F LP+L+ Sbjct: 104 FDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILSR 163 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++K VR P+ L+L PTRELA QVAD+F+ + + L V + GG + Q L R Sbjct: 164 IDKS---VRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +G L ++ + LV+DEAD ML+MGF ++ I P +Q Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S+ +L NP I V + + T I F+ A +K AL + L + Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFL-NVAHRNKMDALTRILEVT 339 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K + L +GFS AI+G+I Q R + + K+G + ++VA Sbjct: 340 E--FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV NFD+PN E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457 Query: 362 K 362 + Sbjct: 458 R 458 >gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107] gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107] Length = 467 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 159/370 (42%), Positives = 231/370 (62%), Gaps = 14/370 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F L L + V ++ +AGY+ PTPIQ TIP VLQ D+ AQTGTGKTA+F+LP++ Sbjct: 33 LTFEQLNLCAETVRSIREAGYLSPTPIQTLTIPEVLQGKDIMASAQTGTGKTAAFILPII 92 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L E R+++ +LIL PTRELAAQV N + Y K + + GG+ Q K+ Sbjct: 93 ELLRVEDKPKRLQV-HSLILTPTRELAAQVEANAKGYTKYLGIRSDAVFGGVSIRPQVKR 151 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+L+ TPGR+LD N+ + +N++ILV+DEADRMLDMGFI I+ + +P R Sbjct: 152 LQGGVDILVATPGRLLDLINQKTIRFDNLKILVLDEADRMLDMGFIRDIKKVIEFLPKKR 211 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++FSAT + ++K++ L +P I+ + + A TIEH + ++K LL L Sbjct: 212 QNMMFSATFSAPIKKLALGLLNDPVEIKASVQNKAAPTIEH--LVHPCDMARKVDLLCHL 269 Query: 239 LQSQDTMKNGIIFCNQK----KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 +++ + K ++F K K V LCH Q AIHGN Q +R + L FK G Sbjct: 270 IKTNE-WKQVLVFARTKHGADKVVKILCH----QHIKASAIHGNKSQGARTRALEGFKNG 324 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++++VA+D+AARG+DI + +V N D+PN AE+Y+HRIGRTGRAG +G A +LVA E+ Sbjct: 325 DVKILVATDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGENGHAISLVAAEEA 384 Query: 355 KHIDAIEKLI 364 + AIEK I Sbjct: 385 LLLKAIEKFI 394 >gi|284006674|emb|CBA71936.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Arsenophonus nasoniae] Length = 615 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 237/369 (64%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 12 ISFADLGLSTPILSALNDLGYEKPSPIQQQCIPYLLDGCDVLGMAQTGSGKTAAFSLPLL 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ ++ P+ L+L PTRELA QVA+ ++ K+ ++ V L GG +++Q + L Sbjct: 72 HNID---ITLKAPQILVLAPTRELAVQVAEAMGEFSKHMRSVNVVALYGGQRYDSQLRAL 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G +++ TPGR+LDH RG L ++++ LV+DEAD ML MGFI ++NI S +P Q Sbjct: 129 RQGPQIVVGTPGRLLDHLKRGTLNLSHLRGLVLDEADEMLRMGFIEDVENIMSQIPSEHQ 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+++PK I + + +T I + + Y +K L + L Sbjct: 189 TALFSATMPEAIRRITRRFMKSPKEISIQSSVTTRPDITQSYWSVYGM--RKNEALVRFL 246 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + +LE+ G++ A++G+++Q R + L K+G + ++ Sbjct: 247 EAED-FDAAIIFVRTKNATLEVAEALERSGYNSSALNGDMNQALREQTLERLKDGRLDIL 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 306 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRAILFVDNRERRLLRN 365 Query: 360 IEKLIEKKV 368 IE+ +++ + Sbjct: 366 IERTMKQPI 374 >gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus] Length = 522 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 233/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELHLAEDILQAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ L++ PTRELA Q + ++G+ + V + GG + Q K L Sbjct: 61 NKIDIDNNVIQ---ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N+IE L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISHVPDERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T++ +E ++ + +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYI--RVKEREKFDTMTRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +G+ IHG++DQ R++++ +FK + ++V Sbjct: 236 VEQP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ GK+ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|86145735|ref|ZP_01064064.1| ATP-dependent RNA helicase [Vibrio sp. MED222] gi|218676917|ref|YP_002395736.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] gi|85836434|gb|EAQ54563.1| ATP-dependent RNA helicase [Vibrio sp. MED222] gi|218325185|emb|CAV27095.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 399 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V AV GY KPT IQ K IP+VL ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R + R +IL PTRELA QV N KY K NLT + GG+ ++ Q +L Sbjct: 61 EMLSKGETQRKKRIRAVILTPTRELAIQVEQNITKYAKFLNLTSLAMYGGVSYQHQKDRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR++D + + + + +E+LV+DEADRMLDMGFI I I + +P Q Sbjct: 121 IEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ ++ ++++ + + I + ++ IE V +K ALL ++ Sbjct: 181 NLLFSATLSTPVRALAKSAISEAEEISIAKTDASKANIEQWLVTV--DKDRKSALLSHMI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +IF K L LEK+G A H Q R KIL++FK+G ++ + Sbjct: 239 -TDGEWDQALIFIETKHGAAKLVAQLEKRGIEAEAFHSGRSQAIREKILADFKKGRLKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A++Y+HRIGRTGRA G+A + ++K++ K++ Sbjct: 298 VATGVAARGIDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAISFLSKDNFKNLCI 357 Query: 360 IEK----LIEKKV 368 IEK LIE++V Sbjct: 358 IEKRLGHLIERRV 370 >gi|260773840|ref|ZP_05882755.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] gi|260610801|gb|EEX36005.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] Length = 420 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 155/377 (41%), Positives = 228/377 (60%), Gaps = 9/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG++P +V ++ G PT IQI+ IP VL HDV AQTGTGKTA+F LP+L Sbjct: 8 FLDLGIAPTLVESLNALGIETPTEIQIQAIPPVLAGHDVLAGAQTGTGKTAAFGLPLLQR 67 Query: 63 LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + V + R L+L PTRELA QV D+ Y K L V + GG Q + Sbjct: 68 LAASKTDVDVSSKDIRALVLVPTRELAQQVFDSLTAYAKGSELKVVVAYGGTSMSVQKQH 127 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L GADVLI TPGR+LDH + L + N++ LV+DEADRMLDMGF+P IQ + + R Sbjct: 128 LRGGADVLIATPGRLLDHAHVKSLYLGNVQTLVLDEADRMLDMGFMPDIQRVLRKLNRAR 187 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT +++ ++ + P ++V ++TA+T+ +K LL L Sbjct: 188 QTLFFSATFDQKIKALAYRMMHEPIEVQVTPANTTADTVSQMVYPV--DKKRKSELLAYL 245 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S++ + ++F K+ L L+ G +I+G+ Q +R K L +FK G I+ Sbjct: 246 IGSRN-WQQVLVFTKTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKAGKIRA 304 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI + V NFD+P +AE+YIHRIGRTGRAG+ G A +L++ ++ + Sbjct: 305 LIATDVAARGIDICQLEQVVNFDLPYKAEDYIHRIGRTGRAGQSGLAVSLMSPQEEPLLQ 364 Query: 359 AIEKLIEKKV--DWLNG 373 AIE+L+++++ +WL G Sbjct: 365 AIERLLDQRLPQEWLKG 381 >gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] Length = 514 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 153/364 (42%), Positives = 228/364 (62%), Gaps = 8/364 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L ++ + V+ +++ Sbjct: 2 GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ---GIVIA 58 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QV + K GK+ + + + GG Q + L++ +++ TPGRILDH NR Sbjct: 59 PTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR 118 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLLFSATM D +++++E F+ Sbjct: 119 KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM 178 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 P+ I+V T I+ ++ Q KK +L +LL Q + + I+F K+ V Sbjct: 179 TEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ-SPELAIVFGRTKRRVD 235 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 L +L +G++ IHG++ Q RM +L FKEG+I+++VA+D+AARGLDI V HV+N Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 295 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379 FD+P E+Y+HRIGRTGRAG+ G A V + + IE+ ++K+D + D +L+ Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRM--DAPTLD 353 Query: 380 PPLE 383 LE Sbjct: 354 EALE 357 >gi|297622829|ref|YP_003704263.1| DEAD/DEAH box helicase domain-containing protein [Truepera radiovictrix DSM 17093] gi|297164009|gb|ADI13720.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM 17093] Length = 442 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 149/365 (40%), Positives = 216/365 (59%), Gaps = 8/365 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F L P++ + AGY PTPIQ IP L D+ G+AQTGTGKTA+FVLP+L Sbjct: 7 SFHGFHLHPRLDQGLQAAGYTTPTPIQRAAIPAALAGRDLLGLAQTGTGKTAAFVLPLLH 66 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L G R+ VR L++ PTRELA Q+ G+ L A + GG+ Q + L Sbjct: 67 RLMDGPRSCVR---ALVVAPTRELAEQIHGEIGVLGRATGLRSATVYGGVGMAPQARALR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA++++ PGR+LDH RG + +E+LV+DEAD M DMGF+P ++ + VP Q Sbjct: 124 GGAEIIVACPGRLLDHLERGTGTLAKLEVLVLDEADHMFDMGFLPAVRKLVGRVPEGAQR 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM EL++++E L+ P +++ + A T+ H + +K ALL+ LL+ Sbjct: 184 LLFSATMPPELRRLAEALLRAPVTLQIGR-TEAAATVSHALYPVARE--QKTALLKHLLR 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D +++ ++F K+ L SLE+ F ++ GN+ Q R K L F+ G + ++V Sbjct: 241 HHD-IRSALVFTRTKRGAKRLAESLERDNFFATSLQGNLSQTKRQKALDAFRAGEVHVLV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HVFN+DVP AE Y HRIGRTGRA R G+A T V +D + I Sbjct: 300 ATDIAARGIDVARVSHVFNYDVPTTAEAYTHRIGRTGRAARTGEACTFVTPDDEGVVRQI 359 Query: 361 EKLIE 365 E+ ++ Sbjct: 360 ERALK 364 >gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster bacterium] Length = 614 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 232/374 (62%), Gaps = 14/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D GLS ++ + GY P+PIQ + I +L D+ G AQTGTGKTA+F LP+L Sbjct: 14 FSDFGLSDSILKVLDSIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFALPLLDN 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + P+ LIL PTRELA QV++ + Y + V + GG ++ Q + L+R Sbjct: 74 ID---LSLNAPQLLILAPTRELAIQVSEAVQVYARGLKGFHVLPIYGGQSYDIQLRPLKR 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++ TPGR++DH +G L ++ ++ V+DEAD ML MGFI I+ + +P RQ Sbjct: 131 GVHCVVGTPGRVMDHIKKGTLKLDQLKSFVLDEADEMLKMGFIDDIKWVMERIPEQRQIA 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239 LFSATM + +++V+E FL NPK ++V T + TA TI ++C V +Q K L ++L Sbjct: 191 LFSATMPNIIKRVAEKFLNNPKIVKVKTKTETAPTIGQKYCLVGGLSQ---KLDALTRIL 247 Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D M IIF K + L L +GFS AI+G+I Q R KI++ FK+G I Sbjct: 248 EVTEFDAM---IIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGID 304 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+P + HV N+D+P AE Y+HRIGRTGRAGR G+A V+ + + + Sbjct: 305 ILVATDVAARGLDVPRISHVVNYDIPQDAETYVHRIGRTGRAGREGEAILFVSHRERRML 364 Query: 358 DAIEKLIEKKVDWL 371 + IE++ +K++ L Sbjct: 365 NNIERVTRQKIEPL 378 >gi|325204407|gb|ADY99860.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240355] Length = 457 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 159/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K+ + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTETSEPRQRNRYESA 409 Query: 417 KSH 419 ++ Sbjct: 410 RAQ 412 >gi|90418358|ref|ZP_01226270.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas manganoxydans SI85-9A1] gi|90338030|gb|EAS51681.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas manganoxydans SI85-9A1] Length = 455 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 160/388 (41%), Positives = 227/388 (58%), Gaps = 8/388 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF GL+ ++ A+ +PTPIQ + IP V++ DV GIAQTGTGKTA+F LP++ Sbjct: 5 DFKAFGLADTLLSALARLDITQPTPIQAQAIPAVMKGRDVLGIAQTGTGKTAAFSLPVID 64 Query: 62 --ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I + GR + P+ L+L PTRELA+Q+A N + Y LT ++ GG+ Q + + Sbjct: 65 ALIAKGGRPAPKTPKVLVLTPTRELASQIAGNVKSYTAGTKLTHHVIFGGVSIRPQIEAM 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D++I TPGR+LD N+ L ++ + +V+DEADRMLDMGF+ + I S +P RQ Sbjct: 125 RRGVDIVIATPGRLLDLLNQRALTLSEVHHVVLDEADRMLDMGFVKDVMRIVSQLPADRQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSATM +++++ L NP R+EV T E I V Q +KK L++ L Sbjct: 185 SLLFSATMPRAMEELAAKILTNPVRVEVTPEVVTVEKINQS-VFLVPQKAKKLWLIEHL- 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IF K L LEK G AIHGN Q +R K L F+ GT+ ++ Sbjct: 243 -AKPDFEKTVIFTRTKHGANKLAADLEKAGIDARAIHGNKSQGARQKALGEFQTGTVSVL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARG+ + D+ HV NFD+P E+Y+HRIGRT RAG+ G A LV + + Sbjct: 302 VATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGKSGIAVALVDPSERSKLRQ 361 Query: 360 IEKLIEKKVDWLNGDLSS---LNPPLEK 384 IE+L D D S+ LN P EK Sbjct: 362 IERLTGLNFDLQQTDYSAHVDLNAPEEK 389 >gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans PV-1] gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans PV-1] Length = 628 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 152/373 (40%), Positives = 236/373 (63%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS V+ ++ D GY TPIQ TIPL+L+ DV G AQTGTGKTA+F LP+L++ Sbjct: 7 FNELGLSEPVLKSIKDQGYENATPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPLLSM 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ L+L PTRELA QVA+ F++Y + V + GG ++ Q ++L+R Sbjct: 67 IDIDQ---RDPQVLVLAPTRELAIQVAEAFQQYAHHIKGFHVLPIYGGQSYDIQLRQLKR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 124 GAHVVVGTPGRVMDHIRRKTLNLSGLKTLVLDEADEMLRMGFIDDVKWVLEQLPEQRQIA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++++ L+NP+ + + ++TA TI F + K L ++L+ Sbjct: 184 LFSATMPAVIRKIAQSHLKNPQHVTIKDKTTTAPTIRQRFWMVSGR--NKIDALTRILEF 241 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K + LE +G++ A++G++ Q R +I++ K G I ++ Sbjct: 242 EPFDGM---IIFVRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIV 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A VA + + + + Sbjct: 299 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRKGDAILFVAPREKRMLYS 358 Query: 360 IEKLIEKKVDWLN 372 IEK ++V+ L Sbjct: 359 IEKATNQRVEQLE 371 >gi|157368742|ref|YP_001476731.1| ATP-dependent RNA helicase DeaD [Serratia proteamaculans 568] gi|157320506|gb|ABV39603.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568] Length = 653 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 230/364 (63%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ A ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 69 LD---ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 126 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Q +K L + L++ Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV--QGMRKNEALVRFLEA 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 362 Query: 362 KLIE 365 + ++ Sbjct: 363 RTMK 366 >gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1] gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1] Length = 484 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 153/376 (40%), Positives = 224/376 (59%), Gaps = 8/376 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGLS V+ A+ GY PTPIQ + IP VL+ D+ GIAQTGTGKTA+F+LP + Sbjct: 4 FSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R+ + R L+L PTREL +Q+A + + YG L V ++GG KL Sbjct: 64 LREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDRNKLH 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+LI TPGR+LD ++ + ++E+LV+DEAD+MLD+GF+ ++ I+ LVP RQT Sbjct: 124 RGTDILIATPGRLLDLIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++++ + NP ++ V S+TAE I+ Q +K +LL+ +L Sbjct: 184 LFFSATMPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLF--MVQQDEKQSLLELILS 241 Query: 241 SQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + + +IF K + L + G AIHGN Q R + L F+ G Sbjct: 242 GRHKVPGEFERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRGKT 301 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DIP V HV N+++PN E Y+HRIGRT RAG+ G A A+++ + Sbjct: 302 MILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAY 361 Query: 357 IDAIEKLIEKKVDWLN 372 + I K ++D LN Sbjct: 362 LKDIRKTTGAELDRLN 377 >gi|269968866|ref|ZP_06182847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio alginolyticus 40B] gi|269826516|gb|EEZ80869.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio alginolyticus 40B] Length = 421 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 152/385 (39%), Positives = 239/385 (62%), Gaps = 6/385 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++FADLG+ K++ + + V PTP+Q K+IP VL ++ AQTGTGKTA+F LP++ Sbjct: 7 VNFADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPII 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ + P+ LIL PTRELA QV DN +Y L + + GG Q +KLE Sbjct: 67 QTVQQKKLN-GTPQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLE 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+LI TPGR+LDH G + ++ +LV+DEADRMLDMGF P +Q I +P +Q Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++ ++ +++P +EV+ ++TAET+ +K LL L+ Sbjct: 186 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPV--DKKRKRELLAYLIG 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++F K+ L L+ G +I+G+ Q +R + L FK+G ++ ++ Sbjct: 244 SRN-WQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALI 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++ + AI Sbjct: 303 ATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLQAI 362 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLE 383 E L+++++ +WL G SL +E Sbjct: 363 ENLLDQRLPQEWLAGFEPSLVEEVE 387 >gi|183600372|ref|ZP_02961865.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827] gi|188020163|gb|EDU58203.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827] Length = 622 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 144/366 (39%), Positives = 232/366 (63%), Gaps = 7/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGLS ++ A+ D GY KP+PIQ + IPL++ +DV G+AQTG+GKTA+F LP+L Sbjct: 7 ISFADLGLSASILTALNDLGYEKPSPIQKQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 ++ ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L Sbjct: 67 HNIDPD---LKAPQILVLAPTRELAVQVAEAMGDFSKHMSRVNVVALYGGQRYDVQLRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G V++ TPGR+LDH RG L ++ ++ LV+DEAD ML MGFI ++NI S +P Q Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F++ PK I + +T I + Y +K L + L Sbjct: 184 TALFSATMPEPIRRITRRFMKEPKEIRIQASITTRPDIAQSYWTVYGM--RKNEALVRFL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + +LE+ G++ A++G+++Q R + L K+G + ++ Sbjct: 242 EAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 301 IATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360 Query: 360 IEKLIE 365 +E+ ++ Sbjct: 361 VERTMK 366 >gi|330830109|ref|YP_004393061.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565] gi|328805245|gb|AEB50444.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii B565] Length = 431 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 230/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ AV D GY + TP+Q + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFDFAPEILRAVSDCGYQEMTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A V+ R LIL PTRELAAQVA N + K ++T ++GG + Q KK Sbjct: 61 QRLVDNPAPVQPSNARVLILTPTRELAAQVASNINDFAKYLDITTITIVGGGKQDVQAKK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ GA +++ TPGR+L+H L ++ +E LV+DEADR+LDMGF +Q I V TR Sbjct: 121 LKAGAHIIVATPGRLLEHLTACNLSLSGVECLVMDEADRILDMGFSADVQKILQAVNKTR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +D ++K++ L P+ + VN +STA+T+ H + +K LL +L Sbjct: 181 QNLLFSATFSDAVKKLANLMLDRPQIVSVNKQNSTADTVSHTVYPV--EQKRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + Q+ + ++F + +++ L L G +HG Q +R + L F EG +++ Sbjct: 239 IGKQN-WQQVLVFASTRESCDVLVEELNLDGIKSAVVHGEKAQGNRRRALREFMEGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIPD+ +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIPDLEYVVNYDLPFLAEDYVHRIGRTGRAGKRGMAISFVSREEERTLL 357 Query: 359 AIEKLIEKKV 368 IE LI +K+ Sbjct: 358 EIEALIGQKI 367 >gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2] gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2] Length = 448 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 154/353 (43%), Positives = 213/353 (60%), Gaps = 19/353 (5%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE-------KGRARVRM 72 GY KPTPIQ + IP VL D+ GIAQTGTGKTA+F LP+L L +G ARV Sbjct: 21 GYTKPTPIQAQAIPHVLTGRDLVGIAQTGTGKTAAFALPILHQLAANPQQPPRGGARV-- 78 Query: 73 PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132 L+L PTRELA+Q+A++F G L+VA++ GG+P AQ + L+RG DVL+ TPGR Sbjct: 79 ---LVLSPTRELASQIAESFRSLGSEMQLSVAVVFGGVPHGAQIRALQRGLDVLVATPGR 135 Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192 ++DH + G + E V+DE D+MLD+GF+ I I +P RQ L FSATM E+ Sbjct: 136 LVDHLDSGVAHLGKTEFFVLDEVDQMLDLGFVKAIHRIVKTLPQRRQNLFFSATMPTEIA 195 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQSQDTMKNGII 250 K++ + L+NP ++ V + TA+ +E FV T+ +K +L LL + M II Sbjct: 196 KLAADLLKNPAQVSVTPVAKTADRVEQQVLFVETH----RKRDILVDLL-ADAKMARTII 250 Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310 F K+ + LE G S AIHGN Q R + L++F+ G ++ +VA+D+AARG+D Sbjct: 251 FTRTKRGADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRAGRVRALVATDIAARGID 310 Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 + V HV NFD+P E Y+HRIGRT RAG G A +L + + IE+L Sbjct: 311 VDGVTHVVNFDLPEVPEAYVHRIGRTARAGAEGVAISLCDGAERDLLRNIERL 363 >gi|123440819|ref|YP_001004810.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087780|emb|CAL10566.1| cold-shock dead-box protein A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 657 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 232/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ + K+ N + V L GG ++ Q + L + Sbjct: 69 IDPS---LKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + +K L + L++ Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDG--VRKNDALVRFLEA 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q +R + L K G + +++A Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDILIA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + + IE Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQNIE 362 Query: 362 KLIEKKV 368 + ++ + Sbjct: 363 RTMKMTI 369 >gi|84385236|ref|ZP_00988268.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01] gi|84379833|gb|EAP96684.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01] Length = 399 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V AV GY KPT IQ K IP+VL ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L KG R + R +IL PTRELA QV N KY K NLT + GG+ ++ Q +L Sbjct: 61 EMLSKGETQRKKRIRAVILTPTRELAIQVEQNITKYAKFLNLTSLAMYGGVSYQHQKDRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR++D + + + + +E+LV+DEADRMLDMGFI I I + +P Q Sbjct: 121 IEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ ++ ++++ + + I + ++ IE V +K ALL ++ Sbjct: 181 NLLFSATLSTPVRALAKSAISEAEEISIAKTDASKANIEQWLVTV--DKDRKSALLSHMI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +IF K L LEK+G A H Q R KIL++FK+G ++ + Sbjct: 239 -TDGEWDQALIFIETKHGAAKLVAQLEKRGIQAEAFHSGRSQAIREKILADFKKGRLKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A++Y+HRIGRTGRA G+A + ++K++ K++ Sbjct: 298 VATGVAARGIDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAISFLSKDNFKNLCI 357 Query: 360 IEK----LIEKKV 368 IEK LIE++V Sbjct: 358 IEKRLGHLIERRV 370 >gi|224370609|ref|YP_002604773.1| DeaD [Desulfobacterium autotrophicum HRM2] gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2] Length = 616 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 153/373 (41%), Positives = 232/373 (62%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+++GL V+ A+ D GY PT IQ +TIP +L D+ G AQTGTGKTA+F LP+L+ Sbjct: 21 FSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPLLSR 80 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG---KNYNLTVALLIGGIPFEAQNKKL 119 ++ +++ P+ L+L PTRELA QVA++F+ Y K +N V + GG + Q +L Sbjct: 81 ID---IKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFN--VLPVYGGQAYAGQLNQL 135 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++D RG L + I LVIDEAD ML MGFI ++ I P RQ Sbjct: 136 KRGVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQ 195 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM ++K++ +L +PK + + ++TA+TI F + K L ++L Sbjct: 196 VALFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTH--KLDALTRIL 253 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ T I+F K V L LE +G++ A++G+I Q++R + + FK+G I ++ Sbjct: 254 EAE-TFDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDIL 312 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ V HV N+D+PN AE+Y+HRIGRTGRAGR G A V+ + + Sbjct: 313 VATDVAARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKV 372 Query: 360 IEKLIEKKVDWLN 372 IEK ++++ + Sbjct: 373 IEKTTRQQIEMMK 385 >gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta DSM 2243] gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243] Length = 414 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 160/419 (38%), Positives = 244/419 (58%), Gaps = 20/419 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS + AV G+ PTP+Q + IPLVL+ DV A TGTGKTA+F LP+ Sbjct: 5 FQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFER 64 Query: 63 LEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + GRA R PR L++ PTREL Q+ + K N + ++GG ++ Q KL+R Sbjct: 65 I--GRAKRPGSPRALVVSPTRELTQQIDAACTQLAKASNRRMLTVMGGTKYKGQIAKLDR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVL+ TPGR+ D RG + + ++E+LV+DEADRMLDMGF P ++ + + P +RQTL Sbjct: 123 GIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSSRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ + + L++P +EV+ TA+TI+ + KK ALL+ +LQ Sbjct: 183 LFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPM--KKPALLRLVLQQ 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + K I+F + K L++ GF +IH + Q R + L F +G I ++VA Sbjct: 241 RGS-KRVIVFADTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARG+D+ ++ +V N+D+P E+Y+HRIGRTGRAG G A + V+ E + IE Sbjct: 300 TDVLARGIDVSNIEYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPEAKAQLLDIE 359 Query: 362 KLIEKKVDWLNGD----------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 KL+ +++ L+ D L+S P + A + + + N ++GF RR+ Sbjct: 360 KLLGERIPTLDIDGYDATEAEKALASQFVPKATVGSAAFSRSLRRN----GASGFGRRR 414 >gi|126739425|ref|ZP_01755118.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6] gi|126719525|gb|EBA16234.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6] Length = 468 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 149/374 (39%), Positives = 236/374 (63%), Gaps = 5/374 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ +GL ++ + + G PTPIQ + IP L DV G+AQTGTGKTA+F +P+++ Sbjct: 28 EFSSMGLPKHILTRLANMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLIS 87 Query: 62 -ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ GR + R L+L PTRELA Q+A+ + + + V L++GG+ Q ++ Sbjct: 88 RMLDYGRKPAGKTVRGLVLAPTRELANQIAETLKALTEGTPMKVGLVVGGVSINPQISRI 147 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR+LD +R L + + + LV+DEAD+MLD+GFI ++ I++L+P RQ Sbjct: 148 ARGTDILVATPGRLLDILDRDALDLGSCDFLVLDEADQMLDLGFIHALRKISALLPEERQ 207 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM ++ +++ ++L+ P RIEV P A + V A+ K L + L Sbjct: 208 TMLFSATMPKQMNEIANSYLKRPVRIEVTPPGKPAAKVTQS-VHFIAKAEKLSLLKELLA 266 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +D + ++F K + L LEK GF+ AIHGN Q R + L+ FK G I+++ Sbjct: 267 NHKD--ERTLVFGRTKYGMEKLMRVLEKAGFAAAAIHGNKSQGQRERALAAFKSGEIKVL 324 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIPDV V+N+++PN + Y+HRIGRT RAG+ G+A A ++++ + A Sbjct: 325 VATDVAARGLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGEAVAFCAPDEMEELKA 384 Query: 360 IEKLIEKKVDWLNG 373 I+K+++ + +G Sbjct: 385 IQKVMKITIPTASG 398 >gi|325134358|gb|EGC57003.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M13399] gi|325144657|gb|EGC66955.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240013] gi|325205823|gb|ADZ01276.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M04-240196] Length = 457 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 159/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K+ + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRYESA 409 Query: 417 KSH 419 ++ Sbjct: 410 RAQ 412 >gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235] gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235] Length = 603 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 154/363 (42%), Positives = 217/363 (59%), Gaps = 12/363 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LS V A+++ GY P+PIQ + IP+VL D+ G AQTGTGKTA+F LP+L++ Sbjct: 14 FADLSLSQPVQDALVEIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAFALPLLSM 73 Query: 63 L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 L E G P+ +IL PTRELA QV++ YG+ L V + GG F Q + Sbjct: 74 LDPNEDG------PKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTDFTRQFRA 127 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+R +++ TPGRI+DH RG L ++ I +V+DEAD ML MGFI ++ I P R Sbjct: 128 LDRKPAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWILEHTPSER 187 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT LFSATM + +++ L+ P + + ++T T+ F+ K +L L Sbjct: 188 QTALFSATMPPRIAAIAKKQLKEPVTVAIKNTTATVSTVRQRFIKCNG-MRHKIEVLGNL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++++ I+F K + L G +V AIHG+I Q R K +S KEG I + Sbjct: 247 LETEER-DAAIVFTRTKSAASMIAEELAASGHAVEAIHGDITQNKREKAVSLLKEGKIDI 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HVFNFD+P+ AE YIHRIGR GRAGR G+A L+ + D + + Sbjct: 306 LVATDVAARGLDVDRISHVFNFDIPDDAEPYIHRIGRAGRAGRSGEAILLLTRRDFRKLR 365 Query: 359 AIE 361 IE Sbjct: 366 DIE 368 >gi|145298647|ref|YP_001141488.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851419|gb|ABO89740.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida subsp. salmonicida A449] Length = 431 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 230/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ AV D GY + TP+Q + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFDFAPEILRAVSDCGYQEMTPVQRQAIPTIRRGLDVLASAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A ++ R LIL PTRELAAQVA N + K ++TV L+GG + Q KK Sbjct: 61 QRLVDKPAELQPSNARVLILTPTRELAAQVASNINDFAKYLDVTVLTLVGGGKQDVQAKK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ GA +++ TPGR+L+H L ++ +E LV+DEADR+LDMGF +Q I V R Sbjct: 121 LKAGAHIIVATPGRLLEHLTACNLSLSGVECLVLDEADRILDMGFSADVQQILQAVNKER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT +D ++K++ L P+ I VN +STA+T+ H + +K LL +L Sbjct: 181 QNLLFSATFSDGVKKLANVMLDKPQIISVNKQNSTADTVTHTVYPV--EQKRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + Q+ ++F + +++ L L G +HG+ Q SR + L F EG +++ Sbjct: 239 IGKQN-WPQVLVFASTRESCDELVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIPD+ +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIPDLQYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLL 357 Query: 359 AIEKLIEKKV 368 IE LI +K+ Sbjct: 358 EIEALIGQKI 367 >gi|73748116|ref|YP_307355.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1] gi|147668820|ref|YP_001213638.1| DEAD/DEAH box helicase domain-containing protein [Dehalococcoides sp. BAV1] gi|289432193|ref|YP_003462066.1| DEAD/DEAH box helicase [Dehalococcoides sp. GT] gi|73659832|emb|CAI82439.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1] gi|146269768|gb|ABQ16760.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. BAV1] gi|288945913|gb|ADC73610.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. GT] Length = 561 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 223/375 (59%), Gaps = 8/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F P V+ V GY +PTPIQ + IP ++ HDV G+AQTGTGKTA++ LP++ Sbjct: 1 MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPII 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L R RVR TL++ PTRELA Q++D+F G+ + + GG+ + Q ++L Sbjct: 61 QKMLSTPRGRVR---TLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DV++ PGR+LDH RG + + +E L+IDEADRM DMGF P IQ+I + Q Sbjct: 118 RSGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E++K++ NP ++V T S + + +K LL ++L Sbjct: 178 TLLFSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSH---SVYPVKSHQKTPLLLEIL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ +T K+ +IF K NL + K GF+ ++ GN+ Q R ++ F+ G +++ Sbjct: 235 KTVET-KSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + HV N+D+P+ E+Y HRIGRTGR R G+AF+LV D + Sbjct: 294 VATDIAARGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRD 353 Query: 360 IEKLIEKKVDWLNGD 374 I++L+ + L D Sbjct: 354 IQRLLSSPIQRLRVD 368 >gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 903] gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 903] Length = 523 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 235/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS +++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK + + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +++IE L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F++ P+ +++ T + ++ ++ + +K + +L+ Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYI--RVKEGEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ + Sbjct: 355 ENLTKKRMKGM 365 >gi|332160085|ref|YP_004296662.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|33332423|gb|AAQ11420.1| DeaD box RNA helicase [Yersinia enterocolitica] gi|318607355|emb|CBY28853.1| cold-shock DEAD-box protein A [Yersinia enterocolitica subsp. palearctica Y11] gi|325664315|gb|ADZ40959.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862020|emb|CBX72187.1| cold-shock DEAD box protein A [Yersinia enterocolitica W22703] Length = 657 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 232/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 9 FADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHN 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ + K+ N + V L GG ++ Q + L + Sbjct: 69 IDPS---LKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQLRALRQ 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 126 GPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + +K L + L++ Sbjct: 186 LFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDG--VRKNDALVRFLEA 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q +R + L K G + +++A Sbjct: 244 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDILIA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + + IE Sbjct: 303 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQNIE 362 Query: 362 KLIEKKV 368 + ++ + Sbjct: 363 RTMKMTI 369 >gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus DSM 2032] Length = 552 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 144/351 (41%), Positives = 224/351 (63%), Gaps = 6/351 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA GL P +V V + G+ PTPIQ IPL+L+ D+ G AQTGTGKTA+F LP+L Sbjct: 6 FARFGLHPDLVQTVTELGFTDPTPIQQAAIPLLLEGRDLIGQAQTGTGKTAAFGLPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ R + + L+L PTRELA QVA+ ++YG+ +TV + GG ++ Q + L +G Sbjct: 64 -QRITPRQQGVQALVLAPTRELAIQVAEAIQRYGQQRGITVLAVYGGQAYQQQIRSLRQG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +V++ TPGR+LD N+G L + + +V+DEAD ML MGF+ I+ I +P RQT+L Sbjct: 123 VEVIVGTPGRLLDLMNQGTLDLTTVRTVVLDEADEMLSMGFVEDIELILDRIPAERQTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT++ + +S +L++P+ + + T TIE + Q K A L +L + Sbjct: 183 FSATISKRVLGLSARYLRDPETVSITPKQLTGATIEQRYYLVNQQ--DKVAALTRLFE-M 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +T+ + +IF + L + L +GF A++G++ Q +R+++L+ F+ G ++++VA+ Sbjct: 240 ETIDSALIFTRTRIGTGELANQLTSRGFPAEALNGDLSQDARIQVLNRFRNGQVKVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 D+AARGLDI D+ HVFNFD+P+ E Y+HR+GRTGRAGR G A +L+ +D Sbjct: 300 DVAARGLDIDDISHVFNFDLPDDPEVYVHRVGRTGRAGREGIAISLLTPKD 350 >gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct] Length = 604 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ +V V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 34 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 93 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +R R P+ L+L PTRELA QVA+ FE + KN NL VA + GG + +Q + L+ Sbjct: 94 NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 152 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S V Q Sbjct: 153 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 212 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 213 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 270 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 271 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 329 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 330 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 389 Query: 361 EKL 363 E+ Sbjct: 390 ERF 392 >gi|24372961|ref|NP_717003.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24347107|gb|AAN54448.1|AE015582_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 433 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 227/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F P+++ A+ D GY K TPIQ + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++E ++ R LIL PTRELAAQVA+N E Y K N +V + GG+ E Q +K Sbjct: 61 QKMVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGAD+++ TPGR+L+H L +++++ LV+DEADRMLDMGF IQ I V R Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++K++ + P+ I + ++TA+T+ V + +K LL +L Sbjct: 181 QNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F + L L G +HG Q SR + L F G +++ Sbjct: 239 I-GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIP + +V NFD+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +K+ Sbjct: 358 DIEKLIGQKI 367 >gi|86138673|ref|ZP_01057246.1| putative ATP-dependent RNA helicase protein [Roseobacter sp. MED193] gi|85824733|gb|EAQ44935.1| putative ATP-dependent RNA helicase protein [Roseobacter sp. MED193] Length = 431 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 149/370 (40%), Positives = 234/370 (63%), Gaps = 5/370 (1%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILE 64 +GL +V+ + D G PTPIQ + IP L DV G+AQTGTGKTA+F +P+++ +L+ Sbjct: 1 MGLPDQVLARLADMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLISRMLD 60 Query: 65 KGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123 GR R L+L PTRELA Q+A + + + + L++GG+ Q +++ RG Sbjct: 61 YGRKPAAHTVRGLVLAPTRELANQIAATLKALTEGTPMKIGLVVGGVSINPQIQRISRGT 120 Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183 D+L+ TPGR+LD +R L + + + LV+DEAD+MLD+GFI ++ I+SL+P RQT+LF Sbjct: 121 DILVATPGRLLDILDRNALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPEERQTMLF 180 Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243 SATM ++ +++ ++L P RIEV P A + V A+ K L + L + +D Sbjct: 181 SATMPKQMNEIANSYLNRPVRIEVTPPGKPAAKVTQS-VHFIAKAEKLSLLKELLTEHKD 239 Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 + ++F K + L LEK GF+ AIHGN Q R + L+ FK G I+++VA+D Sbjct: 240 --ERTLVFGRTKHGMEKLMKVLEKSGFAAAAIHGNKSQGQRERALAAFKSGQIKVLVATD 297 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 +AARGLDIPDV +V+N+++PN + Y+HRIGRT RAG+ G+A + ++++ + AI+K+ Sbjct: 298 VAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCSPDEMEELKAIQKV 357 Query: 364 IEKKVDWLNG 373 ++ + +G Sbjct: 358 MKITIPTASG 367 >gi|317047409|ref|YP_004115057.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp. At-9b] gi|316949026|gb|ADU68501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b] Length = 451 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 162/371 (43%), Positives = 239/371 (64%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60 Query: 61 TIL--EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + AR R P R LIL PTRELAAQV +N +Y + NL ++ GG+ Q Sbjct: 61 QRLSAKDAPARGRRPVRALILTPTRELAAQVGENVREYSQYLNLRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVL+ TPGR+LD ++ + ++++EILV+DEADRMLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLVATPGRLLDLAHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++E L NP+++EV ++ +E + + +K LL Sbjct: 181 RQNLLFSATFSDEIKSLAEKLLNNPEQVEVARRNTASEQVSQQV--HFVDKKRKRELL-S 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ +D + ++F K +L L K G + AIHGN Q +R + L++FK G I+ Sbjct: 238 LMIGRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGGIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA G A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLL 357 Query: 358 DAIEKLIEKKV 368 IE+L+++++ Sbjct: 358 RDIERLLKREI 368 >gi|253686992|ref|YP_003016182.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753570|gb|ACT11646.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 625 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 238/377 (63%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L + ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 68 L---KPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 125 GAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+++P+ + + + +T I + Q +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTV--QGMRKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++++ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551] gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551] gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] Length = 631 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 153/388 (39%), Positives = 233/388 (60%), Gaps = 23/388 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++V A+ + Y PTP+Q + IP L D+ +QTG+GKTA+F+LP + Sbjct: 64 FAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 123 Query: 63 L----EKGRARV---------RMPRT-------LILEPTRELAAQVADNFEKYGKNYNLT 102 + E R RV R PR L+L PTRELA QV +YG++ Sbjct: 124 ISEQPEPQRPRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRI 183 Query: 103 V-ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161 V A ++GG+P+ Q L R D++I TPGR+LDH + G++ ++ +++LV DEADRMLDM Sbjct: 184 VCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDM 243 Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221 GF I+ I P +RQ L+FSATM +++++E ++ P+RIE+ IE Sbjct: 244 GFADDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERL 303 Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 T S K LL LL+ ++K I+F K++ +L L + GF+ A+HG++ Q Sbjct: 304 HFT-DDMSHKQQLLDHLLRDA-SLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQ 361 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 +R + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR Sbjct: 362 GARNRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 421 Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 G A LV D IE+ ++++++ Sbjct: 422 SGIAINLVNHGDTFQWRRIERFVDRRIN 449 >gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 481 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 149/385 (38%), Positives = 235/385 (61%), Gaps = 15/385 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+ ++ A+ +G+ + TPIQ +TIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + + + +++EPTRELA Q + + G++ N V ++ GG Q + L+ Sbjct: 61 QKLDLDKQEQAI-QAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++L+ TPGR+LDH R + ++ ++ +V+DEAD MLDMGFI I++I + QT Sbjct: 120 KAPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238 LLFSATM +Q + E F+ +P+ +++ TA+ I+ FV ++ C L+ Sbjct: 180 LLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLID-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ D ++F K+ V L L +G++ IHG++ Q RM++L FKEG + + Sbjct: 238 VENPDL---AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG+ G + T V +I ++ Sbjct: 295 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMR 354 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383 IE L +KK +S L PP + Sbjct: 355 TIEDLTKKK-------MSPLRPPTD 372 >gi|327541188|gb|EGF27732.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula baltica WH47] Length = 556 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 157/386 (40%), Positives = 225/386 (58%), Gaps = 20/386 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL+ ++ + AGY PTPIQ ++IP +L +DV G AQTGTGKTA+F LP+L I Sbjct: 75 FEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPILQI 134 Query: 63 LEKGRARVRMPR-------------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109 + + R P TL+L PTREL+AQ+ NF YGK L ++ GG Sbjct: 135 MWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVIFGG 194 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 + Q ++L+ G D L+ TPGR+LD N+G + + ++EILV+DEAD MLDMGF+P ++ Sbjct: 195 VNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPDVKR 254 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQ 227 I +P RQ LLFSATM ++K+++ L +P I++ T E IE CFVA Sbjct: 255 ILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVA---- 310 Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 + K LL ++++ T ++F K + L K G AIHGN Q +R++ Sbjct: 311 QADKPRLLNHFIETKATGST-LVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRT 369 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L+ FK + ++VA+D+AARG+DI + V N+D PN E Y+HRIGRTGRAGR G+ Sbjct: 370 LNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVM 429 Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNG 373 + K AIE+ I+ ++ G Sbjct: 430 FCGGHETKFFIAIEREIKLQIPVATG 455 >gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586] gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586] Length = 421 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 160/420 (38%), Positives = 245/420 (58%), Gaps = 23/420 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+ LGL P ++ + D G V PTPIQ + IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 8 FSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPYVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67 Query: 62 ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E+ R + R L+L PTRELA QV D+ + Y K L + + GG + Q Sbjct: 68 FIEQPWVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNH 127 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + R Sbjct: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT +++ V+ +++P ++V +STAET++ +K LL L Sbjct: 188 QTLFFSATFDSKIKAVAYRIMRDPAEVQVTPSNSTAETVQQMVYPV--DKKRKRELLSYL 245 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G ++ Sbjct: 246 IGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ ++ Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLVGLAVSLLSHDETPQLE 364 Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 AIE+L+ ++ +WL G P E R+ N P++S+G K+ +Q Sbjct: 365 AIERLLNTRLPQEWLKG----FEPSPE---------VREENS-PRRSSGRSAEKRKMKAQ 410 >gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium HTCC2255] gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium HTCC2255] Length = 531 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 157/369 (42%), Positives = 223/369 (60%), Gaps = 13/369 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+ LGL ++V A+ GY PTPIQ + IP VL D+ G+AQTGTGKTA+F LP++ Sbjct: 105 FSKLGLDAEIVKALGFLGYTLPTPIQSQAIPAVLNSKDLVGLAQTGTGKTAAFALPLIQQ 164 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 I KGR+ R +IL PTRELA Q+ + F +GK L IGG P Q Sbjct: 165 LLMNPIAIKGRS----ARAIILSPTRELALQIHEAFVSFGKRLPLNFTHAIGGAPIRKQM 220 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L +G D+L+ TPGR+ D ++ L ++ + LV+DEAD+MLD+GF+P ++ I S V Sbjct: 221 RDLSKGVDILVATPGRLEDLVDQKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISKVNK 280 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSATM+ E++K++E +L +P ++ V +ST + IE + Q K LQ Sbjct: 281 DRQTLLFSATMSKEIKKLTETYLTDPVQVSVTPENSTVDKIEQSLMHLSKQ--NKGLALQ 338 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +++ S + K I+F K L L Q AIHGN Q R + L +FK+G Sbjct: 339 RII-SANPKKRVIVFSRTKHGSDKLVKWLGTQNIGADAIHGNKSQGQRQRALDDFKKGKT 397 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++A+D+AARG+DIP + V NFD+PN E+Y+HRIGRT RAG GKA A ++ K Sbjct: 398 YILIATDIAARGIDIPGIEIVINFDLPNVPESYVHRIGRTARAGADGKAIAFCAPDEHKQ 457 Query: 357 IDAIEKLIE 365 + IEK+I+ Sbjct: 458 LWDIEKVIK 466 >gi|260777929|ref|ZP_05886822.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450] gi|260605942|gb|EEX32227.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450] Length = 398 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 155/372 (41%), Positives = 221/372 (59%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + A+ GY KPT IQ K IP+VL+ D+ AQTGTGKTASFVLPML Sbjct: 1 MPFSKLGLSQPITDAIQQLGYDKPTTIQTKAIPVVLRGEDLIAAAQTGTGKTASFVLPML 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R LIL PTRELA QV + YG++ LT + GG+ +AQ + L Sbjct: 61 EKLSQGETQRKKRIRGLILTPTRELAVQVEEKIRDYGQHLALTSLAMYGGVDEQAQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR++D + + + +E+LV+DEADRMLDMGFI I I +P Q Sbjct: 121 IEGVDILVATPGRLIDMYGKRAVHFEEVEMLVLDEADRMLDMGFIDDINKILDRLPTDIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++ +++ + +P I + ++ + IE + KK ALL L+ Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPYEISIAANQASKKNIEQWLITV--DKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D +IF K L LEK+G A H Q R K+L +FK G IQ M Sbjct: 239 KEND-WDQALIFIETKHGAAKLAQQLEKRGIEAEAFHSGRSQAVRSKLLEDFKAGKIQYM 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ + ARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 IATGVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKK 367 IE LIE++ Sbjct: 358 IESRLGHLIERR 369 >gi|19552380|ref|NP_600382.1| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] Length = 732 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 150/361 (41%), Positives = 223/361 (61%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL +V+ AV GY P+PIQ +TIP++++ DV G+AQTGTGKTA+F LP+L Sbjct: 104 FDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILAR 163 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++K VR P+ L+L PTRELA QVAD+F+ + + L V + GG + Q L R Sbjct: 164 IDKS---VRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +G L ++ + LV+DEAD ML+MGF ++ I P +Q Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S+ +L NP I V + + T I F+ A +K AL + L + Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFL-NVAHRNKMDALTRILEVT 339 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K + L +GFS AI+G+I Q R + + K+G + ++VA Sbjct: 340 E--FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV NFD+PN E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457 Query: 362 K 362 + Sbjct: 458 R 458 >gi|325132396|gb|EGC55089.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M6190] gi|325138385|gb|EGC60953.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis ES14902] gi|325142616|gb|EGC65008.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis 961-5945] gi|325201879|gb|ADY97333.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240149] gi|325208368|gb|ADZ03820.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis NZ-05/33] Length = 457 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 159/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K+ + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRYESA 409 Query: 417 KSH 419 ++ Sbjct: 410 RAQ 412 >gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942] gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942] Length = 497 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 229/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ A+ G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F +P++ Sbjct: 5 FQDFQLSSDLMKAINRLGFEEATPIQAETIPLGLQHKDVIGQAQTGTGKTAAFGIPLVEK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + ++ +++ PTRELA QV++ K G++ V + GG Q + L++ Sbjct: 65 INPESPNIQ---AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR L +NN+ +V+DEAD ML+MGFI I++I S VP QTLL Sbjct: 122 PHIIVGTPGRLLDHINRRTLRLNNVNTVVMDEADEMLNMGFIEDIESILSNVPSEHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ NP+ ++V T I+ ++ + + KK L +LL Q Sbjct: 182 FSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHER--KKFDTLTRLLDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM L FK+G I+++VA+ Sbjct: 240 -SPELAIVFGRTKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAG+ G A T + + + AIE+ Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQ 358 Query: 363 LIEKKVDWL 371 ++K+D + Sbjct: 359 TTKRKMDRM 367 >gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 479 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 152/389 (39%), Positives = 231/389 (59%), Gaps = 22/389 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL+ ++ + G+ +PTPIQ + IP +L+ D+ GIAQTGTGKTA+F LP+L Sbjct: 3 DFRGLGLASSLLDTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPILH 62 Query: 62 IL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L +G ARV L+L PTRELA+Q+A+ F G+++ L+VA++ GG+ A Sbjct: 63 ALITHPTPAPRGGARV-----LVLSPTRELASQIAETFRTLGQSHALSVAVVFGGVSPGA 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q K L+RG D+L+ TPGR++DH + G + E V+DE D+MLD+GF+ I+ I + Sbjct: 118 QIKALQRGLDILVATPGRLVDHIDSGVAHLGKTEFFVLDEVDQMLDLGFVKPIRRIVGTL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ+L FSATM E++K++ + L++P + V + TA+ + V + + +K + Sbjct: 178 PAKRQSLFFSATMPGEIRKLATDLLKDPVTVSVTPVAKTADRVRQQVV--FVETHRKRDI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L +L M I+F K+ + LEK G AIHGN Q R + L F+ G Sbjct: 236 LIELF-GDAMMTRTIVFTRTKRGADKVTQHLEKAGIPAFAIHGNKSQSQRERSLLAFRSG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++ +VA+D+AARG+DI V HV N+++P E+Y+HRIGRT RAG G A +L + Sbjct: 295 HVRALVATDIAARGIDIDGVTHVVNYELPEVPESYVHRIGRTARAGAEGIAISLCDGTER 354 Query: 355 KHIDAIEKLI-------EKKVDWLNGDLS 376 ++ IEKL +++ NG++S Sbjct: 355 DYLRNIEKLTRLNLPVEDRRSSLQNGEIS 383 >gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185] gi|149127966|gb|EDM19188.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185] Length = 375 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 153/375 (40%), Positives = 230/375 (61%), Gaps = 6/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59 M F +L ++ ++ A+ + GY PTPIQ K IP L + D+ G AQTGTGKTASF +P+ Sbjct: 1 MTFKELNITEPILKAIKEKGYTVPTPIQEKAIPAALAKRDILGCAQTGTGKTASFAIPII 60 Query: 60 --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ K + + + LIL PTRELA Q+++ + Y K + ++ GG+ Q Sbjct: 61 QHLQVVSKESVKRQGIKALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G D+L+ TPGR+LD N+G + ++ I+ V+DEADRMLDMGFI I+ I +P Sbjct: 121 MLRKGIDILVATPGRLLDLMNQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTL FSATM D + ++++ L+NP +I + SST ++I V + + +K LL Sbjct: 181 KQTLFFSATMPDTIVTLTKSLLKNPVKIYITPKSSTVDSINQ--VVYFVEKKEKSQLLIS 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +LQ + ++ +IF K N + L K G AIHGN Q +R L NFK G + Sbjct: 239 ILQKAED-QSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +MVA+D+A+RG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K + Sbjct: 298 VMVATDIASRGIDISELPMVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLV 357 Query: 358 DAIEKLIEKKVDWLN 372 + I+KL KK++ N Sbjct: 358 NDIQKLTGKKLNKAN 372 >gi|254457027|ref|ZP_05070455.1| dead/deah box helicase [Campylobacterales bacterium GD 1] gi|207085819|gb|EDZ63103.1| dead/deah box helicase [Campylobacterales bacterium GD 1] Length = 431 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 158/369 (42%), Positives = 234/369 (63%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ A+ + GY PT IQ + IPLVL + D+ AQTGTGKTA+F LP+L Sbjct: 1 MSFEKLGLIKPLLGAIKELGYEHPTLIQKRAIPLVLAKSDIFATAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L A R R +IL PTREL+ Q+ ++ + Y K+ +LT A+L+GG EAQ + L Sbjct: 61 QKLRNTTADENRTIRAVILSPTRELSIQIHEDVKNYSKHMSLTSAILVGGKDIEAQQRML 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D++I TPGR ++ ++G L + NIE+ V+DEADRMLDMGF I+ I +P Q Sbjct: 121 KTGIDIVIGTPGRFMELMDKG-LDITNIEVFVVDEADRMLDMGFSKEIRRIHLQLPRRHQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +D+++K+S+ L P IE ++T +TI VA +K LL L+ Sbjct: 180 TLLFSATYSDKVRKLSKQILTKPAFIETAKKNTTVDTINQ--VAYMVDTDRKAELLAYLI 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S++ ++F K + L L+K G IHG+ Q +R K L+ FKEG I+++ Sbjct: 238 GSRN-FPQVLVFTKTKVSADALFIELKKDGLKCGIIHGDKTQANRQKTLTQFKEGQIRVL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDI ++ +V N+++P+ E+Y+HR+GRTGRAGR G+A +L+ D +I Sbjct: 297 VATDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAGRDGQAISLLDVYDKYNIKD 356 Query: 360 IEKLIEKKV 368 +E+LI +K+ Sbjct: 357 VERLIGQKI 365 >gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1] Length = 569 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 147/363 (40%), Positives = 229/363 (63%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ +V V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ ++R R P+ L+L PTRELA QVA+ FE + KN NL VA + GG + +Q + L+ Sbjct: 68 NIDL-KSRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S V Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 TEET-DGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483] gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f] gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23] gi|156110962|gb|EDO12707.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483] gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f] gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23] Length = 374 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 228/371 (61%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L ++ ++ A+ + GY PTPIQ + IP L + D+ G AQTGTGKTASF +P++ Sbjct: 1 MTFKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPII 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ K A+ R + LIL PTRELA Q+++ Y K + ++ GG+ Q Sbjct: 61 QHLQMNKEAAKCRGIKALILTPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDM 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD N+G + ++ I+ V+DEADRMLDMGFI I+ I +P + Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM D + ++ + L+NP RI + SST + IE + + + +K LL + Sbjct: 181 QTLFFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAIEQ--MVYFVEKKEKSLLLVSI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ + ++ ++F K N + L K G AIHGN Q +R L NFK G ++ Sbjct: 239 LQKSED-QSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K ++ Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVN 357 Query: 359 AIEKLIEKKVD 369 I+KL KK++ Sbjct: 358 DIQKLTGKKLN 368 >gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16] gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16] Length = 646 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 231/386 (59%), Gaps = 21/386 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++ A+ + Y PTP+Q + IP L D+ +QTG+GKTA+F+LP + Sbjct: 60 FATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 119 Query: 63 LEK-----------GRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV- 103 + + R + + PR L+L PTRELA QV + KYG+N V Sbjct: 120 ISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVC 179 Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163 A ++GG+P+ Q L + D+L+ TPGR+LDH + G++ ++ +++LV DEADRMLDMGF Sbjct: 180 ASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGF 239 Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223 I I + P TRQTL+FSAT+ + +++ L++P+RIE+ + IE Sbjct: 240 ADDIDAIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQRLHF 299 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 T S K LL LL+ T+K I+F K++ +L L GFS A+HG++ Q + Sbjct: 300 TD-DMSHKERLLDHLLRDA-TLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGA 357 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G Sbjct: 358 RNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSG 417 Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD 369 A LV D+ IE+ +++D Sbjct: 418 TAINLVNHNDMFQWKRIERFTNQRID 443 >gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis SCHU S4] gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis FSC198] gi|224457676|ref|ZP_03666149.1| cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis MA00-2987] gi|254371138|ref|ZP_04987140.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp. tularensis MA00-2987] gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis SCHU S4] gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis FSC198] gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp. tularensis FSC033] gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp. tularensis MA00-2987] gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis NE061598] Length = 569 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ +V V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +R R P+ L+L PTRELA QVA+ FE + KN NL VA + GG + +Q + L+ Sbjct: 68 NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S V Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|88800218|ref|ZP_01115786.1| ATP-dependent RNA helicase [Reinekea sp. MED297] gi|88777064|gb|EAR08271.1| ATP-dependent RNA helicase [Reinekea sp. MED297] Length = 534 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 153/374 (40%), Positives = 236/374 (63%), Gaps = 11/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L ++ A+ + GY +PIQ T+P L HD G AQTGTGKTA+F++ +T Sbjct: 29 FHDLFLPIALMRAIQEVGYEYCSPIQAMTLPYALAGHDCIGKAQTGTGKTAAFLITAITD 88 Query: 63 LEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R V PR LIL PTRELA Q+A++ + K L VA ++GG+ F+ Q ++L Sbjct: 89 LLEHRLEEQYVGEPRALILAPTRELALQIAEDAKALTKYSRLKVAAVVGGMDFDKQKQQL 148 Query: 120 -ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 E+ D+L+ TPGR++D NR + ++ IE+L+IDEADRMLDMGFIP I+ I P T Sbjct: 149 HEQRTDILVATPGRLIDFMNRKAVFLDQIEMLIIDEADRMLDMGFIPDIKTIVRATPRTE 208 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALL 235 RQTLLFSAT + ++ +++ + +P R+EV TAE +E H ++ + +K +L Sbjct: 209 NRQTLLFSATFSQDILNLAQRWTNDPVRVEVEPKVKTAEDVEQHVYLVSS---EEKYPVL 265 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +++++ QD ++F N++ V +L +L+K G + G++ Q R++ L FKEG Sbjct: 266 RRIVR-QDEADRVMVFANRRDIVRDLAENLKKDGIPCQVLSGDVPQNKRIRTLDGFKEGK 324 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +++VA+D+A RG+ + V HV NF +P E+Y+HRIGRTGRAG+ G + + ++D Sbjct: 325 FEVLVATDVAGRGIHVDGVSHVINFTLPEDPEDYVHRIGRTGRAGKKGVSISFACEDDSF 384 Query: 356 HIDAIEKLIEKKVD 369 I AIE+ I++K+D Sbjct: 385 QIPAIEEYIKRKID 398 >gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB] gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB] Length = 423 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 229/370 (61%), Gaps = 10/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L P++ + GY PTPIQ+++IP ++Q DV G+AQTGTGKTA+F LP+L Sbjct: 1 MSFTQFNLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L G + M R LI+ PTRELA Q+ ++ + ++ L L GG+ Q +KL Sbjct: 61 QRLMNGPGK--MVRALIVAPTRELAEQINESINEMSRSTKLKSVALYGGVSKNPQIEKLR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA++++ PGR+LD +G ++ IE+ V+DEADRM DMGF+P I+ IT +P RQT Sbjct: 119 QGAEIIVACPGRLLDLVAQGVADLSGIEVFVLDEADRMFDMGFLPEIRKITKQLPEKRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LLFSATM +++ ++++ L +P I + + P S T+ H + K ALL +L Sbjct: 179 LLFSATMPADIRSLAKDILHDPLTIRIGNDIPVS---TVSHTLYP--VEQHLKTALLIKL 233 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ DT ++ ++F K + ++K GF V ++ G++ Q R L+ F+EG ++ Sbjct: 234 LKETDT-ESVLVFARTKHRTTRVAMQMKKAGFPVSSLQGDLSQNQRQTALNGFREGKYRI 292 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ + HV N+D+P+ E Y HRIGRTGRA + G AF+ V E+ +D Sbjct: 293 LIATDIAARGIDVTRISHVINYDMPDTVEAYTHRIGRTGRATKSGDAFSFVTSEERDLVD 352 Query: 359 AIEKLIEKKV 368 +IE ++ K++ Sbjct: 353 SIEYVLGKQI 362 >gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-049-V-Sch6] gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-049-V-Sch6] Length = 523 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 147/366 (40%), Positives = 229/366 (62%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +S V+ A+ D G+ +PTPIQ + IP+ + D+ G AQTGTGKTA+F LP + Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+ R + +IL PTRELA QVA+ K + ++T + GG Q + L++ Sbjct: 62 LERVDGSNRHVQVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH +RG + +++I+V+DEAD ML+MGF+ I I +P QTLL Sbjct: 122 PQIIVATPGRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E +L P I + T + IE ++ Q +K +L +L Q Sbjct: 182 FSATMPKTIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIE--VQDRQKFDVLCRLFDLQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIF K+ V + +L+K+G+ IHG++ Q+ R ++ F+EGTI ++VA+ Sbjct: 240 -APELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y HR+GRTGRAG+ G+A+T V +I+H+ AIE+ Sbjct: 299 DVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIER 358 Query: 363 LIEKKV 368 L ++K+ Sbjct: 359 LTKRKI 364 >gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium ammoniagenes DSM 20306] gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium ammoniagenes DSM 20306] Length = 658 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 229/371 (61%), Gaps = 9/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL KV AV GY P+PIQ +TIP++++ DV G+AQTGTGKTA+F LP+L+ Sbjct: 62 FGNLGLPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 121 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ R P+ L+L PTRELA QVAD+F+ + + + V + GG + Q L R Sbjct: 122 ID---VNARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR 178 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++ + LV+DEAD ML+MGF ++ I + P +Q Sbjct: 179 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILADTPEEKQVA 238 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL-LQ 240 LFSATM + ++++S+ +L +P + V + T + I+ F+ T A +K A + L + Sbjct: 239 LFSATMPNSIRRLSKKYLNSPAEVTVKSEQRTNDNIKQRFLLT-AHRAKLDAFTRILEVT 297 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M I+FC K + L G++ AI+G+I Q R + + K+G + ++V Sbjct: 298 DYDAM---IVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILV 354 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV NFD+PN E+Y+HRIGRTGRAGR G+A V + + + +I Sbjct: 355 ATDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSI 414 Query: 361 EKLIEKKVDWL 371 E++ +++ + Sbjct: 415 ERVTNARLEEM 425 >gi|254669919|emb|CBA04478.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha153] Length = 457 Score = 289 bits (739), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 159/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K+ + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRYESA 409 Query: 417 KSH 419 ++ Sbjct: 410 RAQ 412 >gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] Length = 513 Score = 289 bits (739), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 228/369 (61%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL +V A+ + G+ + T IQ +T+P+ LQ D+ G AQTGTGKTA+F +P++ Sbjct: 4 FNDFGLHHSIVRALSNMGFEEATAIQDQTVPVALQGRDLIGQAQTGTGKTAAFGIPLIER 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++ ++ ++L PTRELA QVA+ K + N++ + GG Q K L++ Sbjct: 64 MDETSGNIQ---GVVLTPTRELAVQVAEEINKIAQFKNISALPIYGGQDITRQIKALKKR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR +DH R + ++ IE++V+DEAD ML+MGFI I+ I VP +RQTLL Sbjct: 121 PQIIVATPGRFMDHMRRRTIRLDAIEVVVLDEADEMLNMGFIDDIKEILKEVPESRQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQ 240 FSATM +Q++++ F+ P I+V T I E+ VA ++ C LL + Sbjct: 181 FSATMPRAIQEIAQQFMNEPTIIQVKAKEVTVPNIAQEYMEVAEKQKFDVLCRLLD--IH 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + IIF K+ V L +L K+G+ IHG+++Q R +L FKEGTI+++V Sbjct: 239 SPEL---AIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HVFNFD+P +E+Y+HRIGRTGRAG+ G A T V +I H+ I Sbjct: 296 ATDVAARGLDISGVTHVFNFDIPQDSESYVHRIGRTGRAGKTGLAITFVTSREIDHLRLI 355 Query: 361 EKLIEKKVD 369 E+ ++++ Sbjct: 356 ERTTNRRME 364 >gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] Length = 432 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 161/411 (39%), Positives = 245/411 (59%), Gaps = 11/411 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G S +V A+ + GY K TP+Q K IP + D+ +AQTGTGKTA+F LP++ Sbjct: 1 MSFLSQGFSQDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPII 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++EK +++ R R LIL PTRELA Q+A+N +Y K ++ + GG +Q K+ Sbjct: 61 QKLIEKPKSKSRFNVRALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSSQEKR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE+G D+L+ TPGR+++H + + N+E LV DEADRMLDMGFI I+ I + Sbjct: 121 LEQGVDILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILEDIRTKP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT + ++ ++ + L P+RI V +STA+TI H V +K +L +L Sbjct: 181 QTMLFSATSSPQMNSLASDILHKPQRITVTPENSTADTIAH--VVYPVDEDRKREMLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + K ++F N K++ L L+ G HG+ Q +R + L FKEG ++ Sbjct: 239 I-GKKNWKQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+++AARGLDI ++ +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 298 MVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTLV 357 Query: 359 AIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKS 403 IE+LI + +V + + S + LE++ RKNNP +S Sbjct: 358 QIERLIGQRIHRVQLIGYEPKSRDALLERMHSKPAFSQREGRKNNPTQDQS 408 >gi|325198557|gb|ADY94013.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis G2136] Length = 457 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 160/423 (37%), Positives = 253/423 (59%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|304387245|ref|ZP_07369442.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC 13091] gi|304338733|gb|EFM04846.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC 13091] Length = 457 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 160/423 (37%), Positives = 253/423 (59%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar sotto str. T04001] gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar sotto str. T04001] Length = 510 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 153/364 (42%), Positives = 226/364 (62%), Gaps = 8/364 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +TIP LQ D+ G AQTGTGKTA+F LP+L ++ + V+ +++ Sbjct: 2 GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQ---GIVIA 58 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QV + K GK+ + + + GG Q + L++ +++ TPGRILDH NR Sbjct: 59 PTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINR 118 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 L + N+E +V+DEAD ML+MGFI I+ I + VP T QTLLFSATM D +++++E F+ Sbjct: 119 KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM 178 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 P+ I+V T I+ ++ Q KK +L +LL Q + + I+F K+ V Sbjct: 179 TEPQHIKVKAKEVTMPNIQQFYLE--VQEKKKFDVLTRLLDIQ-SPELAIVFGRTKRRVD 235 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 L +L +G++ IHG++ Q RM +L FKEG I+++VA+D+AARGLDI V HV+N Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYN 295 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379 FD+P E+Y+HRIGRTGRAG+ G A V + + IE+ ++KVD + +L+ Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEA--PTLD 353 Query: 380 PPLE 383 LE Sbjct: 354 EALE 357 >gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG] gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548] gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548] gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG] Length = 569 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ +V V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +R R P+ L+L PTRELA QVA+ FE + KN NL VA + GG + +Q + L+ Sbjct: 68 NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S V Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 TEET-DGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|94311500|ref|YP_584710.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans CH34] gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34] Length = 634 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 156/386 (40%), Positives = 231/386 (59%), Gaps = 21/386 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA LGL ++ A+ +A Y PTP+Q + IP L D+ +QTG+GKTA+F+LP + Sbjct: 51 FAKLGLDAAILRALAEANYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 110 Query: 62 ILEK----------GRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV- 103 I EK R + + PR L+L PTRELA QV + KYG++ V Sbjct: 111 ISEKPATHRPTEPAKRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRHLRRIVC 170 Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163 A ++GG+P+ Q L R D+L+ TPGR+LDH G++ ++ +E+LV DEADRMLDMGF Sbjct: 171 ASILGGMPYPKQLAMLARMPDILVATPGRLLDHIEAGRIDLSALEMLVFDEADRMLDMGF 230 Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223 I I + P +RQTL+FSAT+ + +++ L++P+RIE+ + IE Sbjct: 231 ADDIDAIVAATPASRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADHSNIEQRLHF 290 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 T S K LL LL+ ++K I+F K++ +L L GFS A+HG++ Q + Sbjct: 291 T-DDMSHKERLLDHLLRDA-SLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGA 348 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G Sbjct: 349 RNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSG 408 Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD 369 A LV D+ IE+ ++D Sbjct: 409 VAINLVNHGDMFQWRRIERFTNNRID 434 >gi|254805204|ref|YP_003083425.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha14] gi|254668746|emb|CBA06600.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha14] Length = 457 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 160/423 (37%), Positives = 253/423 (59%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida GA99-3549] gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549] Length = 569 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ +V V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +R R P+ L+L PTRELA QVA+ FE + KN NL VA + GG + +Q + L+ Sbjct: 68 NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S V Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 TEET-DGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC 21756] Length = 475 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 225/368 (61%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ + GY +PTPIQ + IP+VLQ D+ GIAQTGTGKTA+F LP+L Sbjct: 4 FADLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQR 63 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R A R R L+L PTRELA Q+A+NF+ Y + L+V + GG+ + Q K L Sbjct: 64 LAEDRKPAPRRGFRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR++DH +++ EI V+DEAD+MLD+GF+ I+ I S + RQ Sbjct: 124 GGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIASQLTKNRQN 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ K++ L++P ++ V ++T E I+ + AQ +K LL +L Sbjct: 184 LFFSATMPSEIGKLAGELLKDPVQVSVAPQATTVERIDQRVLFIEAQ--RKRPLLAELF- 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ + L G +IHG+ Q R + L+ FK G ++ +V Sbjct: 241 ADSSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HV N+++PN E Y+HRIGRT R G+ G A + A ++ + I Sbjct: 301 ATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKDI 360 Query: 361 EKLIEKKV 368 +K + + Sbjct: 361 QKATRQTI 368 >gi|118497286|ref|YP_898336.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis subsp. novicida U112] gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella tularensis subsp. novicida FTE] gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida U112] gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis subsp. novicida FTE] Length = 569 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ +V V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +R R P+ L+L PTRELA QVA+ FE + KN NL VA + GG + +Q + L+ Sbjct: 68 NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S V Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 TEET-DGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis subsp. holarctica FSC022] gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis subsp. holarctica FSC022] Length = 569 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ +V V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +R R P+ L+L PTRELA QVA+ FE + KN NL VA + GG + +Q + L+ Sbjct: 68 NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S V Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645] gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645] Length = 428 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 152/389 (39%), Positives = 238/389 (61%), Gaps = 11/389 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 +++AD+ LS ++ A+ A Y++P+PIQ IPL L+ DV G A+TGTGKTA+F +P++ Sbjct: 4 INYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPII 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE G R P+ LIL PTRELA QV D K + V + GG P +Q +KL+ Sbjct: 64 ERLEHG-PNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQMEKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R +++ TPGR++D R L + + +V+DEADRMLD+GF P I+ I P RQT Sbjct: 123 RAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LL SAT+ ++K+++ +++NP++++ + + +AETIE + +SKK +L +LL+ Sbjct: 183 LLLSATVPPTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTV--DHSKKFDMLVELLK 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K I+FC K+ + L K+ V IHG++ Q +R + LS+FK +++V Sbjct: 241 REQPQK-AIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ RG+DI DV H+ N+D+P +++Y+HR+GRTGR G+ G A+T V E+ + I Sbjct: 300 ATDVVGRGIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRI 359 Query: 361 EKLIEKKV--DWLNGDLSSLNPPLEKIDI 387 E I+K + D L G P E+ D+ Sbjct: 360 EVRIDKLLIRDELPG-----FAPYERTDV 383 >gi|121635112|ref|YP_975357.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18] gi|120866818|emb|CAM10576.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18] Length = 483 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 159/423 (37%), Positives = 254/423 (60%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 31 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 90 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 91 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 150 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 151 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 210 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 211 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 268 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 269 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 327 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 328 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 387 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K+ + R++N Y S Sbjct: 388 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKTEMREPRQRNRYESA 435 Query: 417 KSH 419 ++ Sbjct: 436 RAQ 438 >gi|83593250|ref|YP_427002.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] gi|83576164|gb|ABC22715.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] Length = 393 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 229/371 (61%), Gaps = 5/371 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FA L L + AV GY TPIQ IP L DV GIAQTGTGKTASFVLP+L Sbjct: 3 EFASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQ 62 Query: 62 ILEKG-RARV-RMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 L K + RV PR LIL PTRELA Q+ ++ G+ + + +++GG+ Q + Sbjct: 63 RLTKDPQPRVPGRPRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILRQTRM 122 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++RG ++L+ TPGR+ D NR + + IE+LV+DEADRMLDMGF P ++ I +++P R Sbjct: 123 VQRGLEILVATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVLPRKR 182 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT++FSAT+ +E+ + + + +P R+EV +S A I+ + + + + K LL L Sbjct: 183 QTVMFSATLPNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVL--FVEQTNKRKLLLDL 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ I+F K L L + G IHGN Q +R + L++FK G ++ Sbjct: 241 LGDARKVERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVRA 300 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ + HV NFD+PN E+Y+HRIGRT RAG G A +L A +++ ++ Sbjct: 301 LVATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEMPYLK 360 Query: 359 AIEKLIEKKVD 369 AIEK+I+ ++D Sbjct: 361 AIEKVIKSRID 371 >gi|317493632|ref|ZP_07952053.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918575|gb|EFV39913.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 636 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 236/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLAAPIIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QV++ + K+ N + V L GG ++ Q + L + Sbjct: 68 IDPS---LKAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVFGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 I KL +V+ N +L Sbjct: 362 RIMKLTIPEVEIPNAEL 378 >gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial match) [Herminiimonas arsenicoxydans] gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas arsenicoxydans] Length = 826 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 152/378 (40%), Positives = 229/378 (60%), Gaps = 9/378 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL LS ++ + + GY P+PIQ TIPL+L DV G AQTGTGKTA+F LP+L+ Sbjct: 9 FSDLNLSEPLLRVLKELGYEAPSPIQAATIPLLLNNSDVLGQAQTGTGKTAAFALPILSR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L+L PTRELA QVA+ F++Y + V + GG + AQ L R Sbjct: 69 ID---IKQTTPQALVLAPTRELAIQVAEAFQRYASHIPGFHVLPIYGGQSYGAQLSALRR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +G L ++ ++ +V+DEAD ML MGFI ++ I P RQT Sbjct: 126 GVHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDVETILQKTPEARQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++ +L++P+ I V + TA+ I + +K L ++L++ Sbjct: 186 LFSATMPSAIKRIATTYLRDPELITVAAKTGTADNIRQRYWLVSGM--QKLEALTRILEA 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T IIF K L L+ +GFS AI+G+I Q+ R + + K+G I ++VA Sbjct: 244 E-TFDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+DVP+ E+Y HRIGRTGRAGR G+A +A + + AIE Sbjct: 303 TDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIE 362 Query: 362 KLIEKKVDWLNGDLSSLN 379 + + + L DL S+ Sbjct: 363 RATRQPIAVL--DLPSVE 378 >gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] Length = 445 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 156/372 (41%), Positives = 235/372 (63%), Gaps = 11/372 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D + +++ A+ +AGY +PTPIQ K IP +L DV GIAQTGTGKTA++VLPM+ Sbjct: 4 NFEDFKFNRQILNAIEEAGYTQPTPIQEKAIPPILNGQDVLGIAQTGTGKTAAYVLPMIM 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ A+ R LIL PTRELA Q+ +N + + K +L ++ GGI +AQ +L + Sbjct: 64 KLK--FAQGDDIRALILAPTRELALQIEENVKIFSKYTDLRSVVVFGGIGPKAQADQLAK 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GAD+LI TPGR +D + G ++ ++ LV+DEAD+M+DMGF+P I + +VP RQ L Sbjct: 122 GADILIATPGRFMDLYLDGHIVTKKLQFLVLDEADKMMDMGFMPQINKVLEIVPKKRQNL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLL 239 LFSATM+++++++SENFL P ++EV ++ AET+E FV K LL+ + Sbjct: 182 LFSATMSEKVERLSENFLLWPTKVEVTPQATPAETVEQELYFVPN---LKTKINLLKIFV 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS---VCAIHGNIDQRSRMKILSNFKEGTI 296 + + IIFC + N+ L ++ F+ V +H N Q +R+ +++FK + Sbjct: 239 EDDPDVSKLIIFCRTRVVAENVYRFLLRR-FNENHVKVLHANKGQNTRINSINSFKNDEV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARG+D+ V HV NF+VP E+Y+HRIGRTGRA GKA T + Sbjct: 298 RILVATDVAARGIDVSSVSHVINFEVPVVYEDYVHRIGRTGRAFSQGKAITFCNPAEEYS 357 Query: 357 IDAIEKLIEKKV 368 I IEKLI +++ Sbjct: 358 IRKIEKLIRQQI 369 >gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 585 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/362 (40%), Positives = 226/362 (62%), Gaps = 9/362 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGLS +V+ A+ D GY P+ IQ TIP +L DV G+AQTGTGKTA+F LP+L+ Sbjct: 19 FSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSN 78 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + + P+ L+L PTRELA QV + FE+Y + V + GG + Q L R Sbjct: 79 LDVAQ---KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRR 135 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF ++ I + P ++Q Sbjct: 136 GVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIA 195 Query: 182 LFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++++S +LQ+P+ I V N +++A T + + +Y Q K L ++L+ Sbjct: 196 LFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQ---KVDALTRILE 252 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + I+F K L L +G++ AI G++ Q R + + K G + ++V Sbjct: 253 TEN-FEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILV 311 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A + V + + + AI Sbjct: 312 ATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAI 371 Query: 361 EK 362 EK Sbjct: 372 EK 373 >gi|238020287|ref|ZP_04600713.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147] gi|237867267|gb|EEP68273.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147] Length = 468 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 166/448 (37%), Positives = 261/448 (58%), Gaps = 17/448 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL ++ A+ + Y PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 4 FTELGLGHEICTALAEQNYQTPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ Q Sbjct: 64 LKRYANASASPAMHPVRMLVLTPTRELADQIDQNTQNYIKNMPLRHTVLFGGVNMNKQTA 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L G +++I T GR+LDH + + ++ +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 124 ELRAGCEIVIATVGRLLDHVKQKNINLSKVEIVVLDEADRMLDMGFIDDIRTIMQMLPKP 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT ++K++++F+ P+ +EV ++T +E ++ + +K LL++ Sbjct: 184 RQTLLFSATFAPAIRKLAQDFMNAPQIVEVAAQNTTNANVEEHVISIDSH--RKRELLER 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + M I+FC K++ + L ++G S AIHG+ Q++R+ +L+ FK G ++ Sbjct: 242 LIVDLN-MNQVIVFCKTKQSADQVSRDLVRRGLSANAIHGDKSQQTRLDVLNQFKSGELR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P +AE+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 301 VLVATDVAARGLDIAELPFVVNYEMPTQAEDYVHRIGRTGRAGADGVAISLMDETEQKMY 360 Query: 358 DAIEKLI--EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 +AI+ L E + + G P E+ AQ + KN P+ S+ + R+ S Sbjct: 361 EAIKALTGNELPISRIEG----FEPHWEQ---AQAEGSLKNENSPRASSRRNEREPQERS 413 Query: 416 QKSHIPLKESEKISKLQQDIQENDADSL 443 +K+ + S Q+I DA + Sbjct: 414 EKNDRRASSRNERSGRHQEIPTVDASKI 441 >gi|39995629|ref|NP_951580.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA] gi|39982392|gb|AAR33853.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA] gi|307634711|gb|ADI83374.2| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens KN400] Length = 443 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 158/381 (41%), Positives = 231/381 (60%), Gaps = 9/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADL L +V+ V DAG+ TPIQ KT+PL L DV G AQTGTGKTA+F++ + Sbjct: 1 MKFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLF 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 T +L GR R PR +IL PTREL Q+ + + G + T+ + GG+ + Q Sbjct: 61 TKLLRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L+ GADV++ TPGR++D+ + + IE+LVIDEADRM DMGFI ++ I +P Sbjct: 121 LKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYD 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ L+FSAT+ + +++ F+ P+++ V TAE +E V + +K LL Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQ--VLYHVGRKEKFPLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+ ++ M+ +IF N K+ L L F I G+++QR R+KIL +FK G + Sbjct: 239 GLLR-KEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +M+A+D+A+RGL I V HV N+D+P AE+Y+HRIGRT RAG GKA ++ ++ H Sbjct: 298 PIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFH 357 Query: 357 IDAIEKLIEKK--VDWLNGDL 375 ++AI + I+ K V+W DL Sbjct: 358 LEAIHEYIKDKIPVEWAEDDL 378 >gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] Length = 669 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 231/371 (62%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL V AV G+ KP+PIQ +TIP++++ DV G+AQTGTGKTA+F LP+L+ Sbjct: 65 FAHLGLPDDVQEAVSKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 124 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ R P+ L+L PTRELA QVAD+F+ + + + V + GG + Q L R Sbjct: 125 ID---TEARYPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR 181 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++ + LV+DEAD ML+MGF ++ I P +Q Sbjct: 182 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA 241 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S+ +L NP + V + T + I F+ T + K ++L+ Sbjct: 242 LFSATMPNSIRRLSKQYLNNPAEVTVKSERRTNDNITQRFLLT--PHRHKMDAFTRILEV 299 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D I+FC K ++ SL++ G++ AI+G+I Q+ R + + K+G + ++VA Sbjct: 300 ID-YDAIIVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVA 358 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+PN E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 359 TDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 418 Query: 362 KLIEKKVDWLN 372 ++ +++ ++ Sbjct: 419 RVTNARLEEMD 429 >gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211] gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211] Length = 539 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P Sbjct: 24 FNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFP---T 80 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEK + + L++ PTRELA Q + ++G++ + V + GG E Q K L G Sbjct: 81 LEKINTENPVVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSG 140 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A +++ TPGR+LD R L +N++E L++DEAD ML+MGF+ I+ I S VP RQTLL Sbjct: 141 AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLL 200 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ F++ P +++ T E ++ ++ + ++K + +L+ + Sbjct: 201 FSATMPDAIKRIGVKFMKEPTHVKIAAKELTTELVDQYYIRV--KENEKFDTMTRLMDVE 258 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++VA+ Sbjct: 259 QP-ELSIVFGRTKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVAT 317 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ IE Sbjct: 318 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQVIES 377 Query: 363 LIEKKVDWL 371 L +K++ + Sbjct: 378 LTKKRMKGM 386 >gi|254425310|ref|ZP_05039028.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335] gi|196192799|gb|EDX87763.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335] Length = 471 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 227/368 (61%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V + G+ +PT IQI+ IP +L HDV G+AQTGTGKTA+F LPML Sbjct: 5 FADLGLSSACVEHLTQIGFTEPTAIQIQAIPQLLSGHDVVGLAQTGTGKTAAFSLPML-- 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E+ R + L+L PTRELA QV+ E + + L V + GG + Q ++L+RG Sbjct: 63 -EQVNPANRYVQALVLTPTRELAMQVSQAMESFNTDKRLYVTSVYGGQSIDRQIQRLKRG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 + +++ TPGRI+D RG L+++ + I+V+DEAD ML+MGFI ++ I S P RQT Sbjct: 122 SQIVVGTPGRIIDLIERGGLVLDRLSIMVLDEADEMLNMGFIQDVETILSHTPDERQTAF 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +QK+S FL++P + V +S+ I+ +SK AL+ +L+ + Sbjct: 182 FSATMEPAIQKLSTRFLKSPVTVSVEAKTSSTARIKQIAYTVPPGWSKPRALM-PILEME 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++ IIF ++ L L+ G S HG++ Q R ++L FK+ ++ +VA+ Sbjct: 241 DP-ESAIIFVRTRRTAAELTRQLQAAGHSADEYHGDLTQPQRERLLQRFKQRQVRWVVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+ + D+ HV N+++P+ ++Y+HRIGRTGRAG+ G+A ++V + + IEK Sbjct: 300 DIAARGIHVDDLSHVINYELPDNLDSYVHRIGRTGRAGKEGRAVSIVMTLEKYKLSRIEK 359 Query: 363 LIEKKVDW 370 +K V++ Sbjct: 360 RFKKSVEY 367 >gi|292486843|ref|YP_003529713.1| cold-shock DEAD box protein A [Erwinia amylovora CFBP1430] gi|292900759|ref|YP_003540128.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946] gi|291200607|emb|CBJ47739.1| ATP-dependent RNA helicase (cold-shock dead-box protein) [Erwinia amylovora ATCC 49946] gi|291552260|emb|CBA19297.1| Cold-shock DEAD box protein A [Erwinia amylovora CFBP1430] gi|312170911|emb|CBX79170.1| Cold-shock DEAD box protein A [Erwinia amylovora ATCC BAA-2158] Length = 638 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 238/377 (63%), Gaps = 11/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ ++ GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ ++ K+ L V L GG ++ Q + L + Sbjct: 68 IDPT---VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSY---WTAYGRKTDALTRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 361 RTMKLTIPEVELPNAEL 377 >gi|212636923|ref|YP_002313448.1| DEAD box family ATP-dependent RNA helicase [Shewanella piezotolerans WP3] gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella piezotolerans WP3] Length = 432 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 227/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY K TPIQ + IP V + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFAPEILRAISECGYQKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFSLPIL 60 Query: 61 -TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ A R R LIL PTRELAAQ+ADN Y K + V ++GG+ ++Q K Sbjct: 61 QKMLDNPSATQRSNARALILTPTRELAAQIADNINDYAKYLEVNVVTIVGGVKMDSQATK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGAD++I TPGR+L+H L ++N++ LV+DEADRMLDMGF IQ I V R Sbjct: 121 LKRGADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNSKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q L+FSAT + ++K++ + P I + ++TA+T+ + +K LL +L Sbjct: 181 QNLMFSATFSAPVKKLASEMMVKPNVITADKQNTTADTVSQVIYPV--EQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F + L L G +HG Q SR + L FKEG +++ Sbjct: 239 I-GKKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDI D+ +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +K+ Sbjct: 358 DIEKLIGQKL 367 >gi|152992584|ref|YP_001358305.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1] gi|151424445|dbj|BAF71948.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp. NBC37-1] Length = 492 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 231/368 (62%), Gaps = 9/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L + AV +AG+ +P+P+Q IPLVL+ HD+ AQTGTGKTA+F LP++ Sbjct: 1 MKFTDFNLKDTIQAAVAEAGFKEPSPVQKDAIPLVLEGHDMIAQAQTGTGKTAAFGLPIM 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ K V L++ PTRELA QV+D ++GK L A + GG + Q ++++ Sbjct: 61 SMM-KADGSVE---GLVIVPTRELAMQVSDELFRFGKLSGLKTATVYGGTAYGKQIERIK 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + A +++ TPGR+ D GK+ +N +V+DEAD MLDMGF+ I+NI + +P RQT Sbjct: 117 Q-ASIVVATPGRLQDLLMSGKIKLNP-HFVVLDEADEMLDMGFLDEIKNIFTFLPKERQT 174 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM + ++K++E L NPK + + ST I + Q ++ L +L+ Sbjct: 175 LMFSATMPNGIRKLAEQILNNPKTVSITKSESTNSKITQYYYV--VQERERDDALVRLID 232 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ K IIFC KK V L L QGF V +HG+++Q+ R + FK+G I + V Sbjct: 233 YKNPEKC-IIFCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGIDIFV 291 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HVFN+ +P +E+Y+HRIGRTGRAG+ G+A TLV+ +++ I I Sbjct: 292 ATDVAARGLDVNDVTHVFNYHIPFDSESYVHRIGRTGRAGKTGEAITLVSPNELRTIKRI 351 Query: 361 EKLIEKKV 368 EK + K+ Sbjct: 352 EKDVGTKM 359 >gi|78485359|ref|YP_391284.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2] gi|78363645|gb|ABB41610.1| DEAD/DEAH box helicase family protein [Thiomicrospira crunogena XCL-2] Length = 393 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 157/366 (42%), Positives = 224/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V AV + GY PT IQ + IP++L D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSKLGLSDPIVKAVSERGYDAPTDIQKQAIPIILSGKDLMAAAQTGTGKTASFVLPLL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L A R R R LIL PTRELA QV N Y K+ NL+ GG +AQ ++L Sbjct: 61 EKLNTDNAIRGRSIRALILVPTRELAMQVETNVVDYAKHLNLSSMAAYGGTDIDAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D+L+ TPGR+LD + L +++E LV+DEAD+MLDMGFI + IT +P RQ Sbjct: 121 MQGIDILVATPGRLLDLAYQRALFFDDLEFLVLDEADKMLDMGFIDDLYKITDRLPHQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LLFSAT+T+ ++ ++ + + + I ++ + T I+ + K ALL L Sbjct: 181 SLLFSATLTEAVRYLAADTVSDDATEISISPQNKTTPKIKQWLITV--DKDTKSALLSHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + Q +IF +K + L L K+G +IH Q +R ++LS FK G ++ Sbjct: 239 INEQH-WDQALIFVEKKHSAAKLVEQLGKRGIIADSIHSGRSQAAREQVLSEFKSGKLKF 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+ +AARG+DI ++ V N+D+P AE YIHRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 LIATGIAARGIDIDNLSRVVNYDLPYPAEEYIHRIGRTGRAGATGEALSLVSKDDFKNLC 357 Query: 359 AIEKLI 364 AIE L+ Sbjct: 358 AIESLL 363 >gi|149910902|ref|ZP_01899534.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp. PE36] gi|149806056|gb|EDM66039.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp. PE36] Length = 431 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 162/393 (41%), Positives = 237/393 (60%), Gaps = 13/393 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+ ++ V GY PTPIQ + IP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 1 MGFSALNLNQNLINTVTKLGYETPTPIQAQAIPAILEGRDIMGGAQTGTGKTAAFALPII 60 Query: 61 TIL--EKGRARVRMP------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L E+ A P R LIL PTREL+ QV +F Y ++ LT L+ GG+ Sbjct: 61 HQLMAEQLTANATEPTAKKQIRALILTPTRELSQQVHKSFVTYSEDSELTSELVYGGVSI 120 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q K L +GAD+L+ TPGR+LD +R L + +E +V DEADRMLDMGF+ I+ I Sbjct: 121 NPQVKALVQGADILVATPGRLLDLLDRETLTLEFVEKIVFDEADRMLDMGFMEEIRRILK 180 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 +P RQT+LFSAT D + K+S++ L +P +EV+T ++ AE +E A +K Sbjct: 181 HLPKKRQTMLFSATFDDAIFKLSKSLLNDPLLVEVDTRNAAAEQVEQIVYA--VDNDRKR 238 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L L+ S++ +IF K+ +L + K G A+HG+ Q +R + L +FK Sbjct: 239 ELTSYLIGSRN-WHQVLIFTRTKQGADSLAKEMCKDGIKTIAVHGDKSQGARERGLEDFK 297 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++ +VA+D+AARGLDI + HV NF++P +AE+YIHRIGRTGRAG G A +LV+ Sbjct: 298 NGKVRALVATDVAARGLDIEQLKHVINFELPFKAEDYIHRIGRTGRAGLSGTATSLVSIG 357 Query: 353 DIKHIDAIEKLIEKKV--DWLNGDLSSLNPPLE 383 + ++ IE L++ ++ WL G L+ P++ Sbjct: 358 ENWLLEEIETLLDTRLVAQWLPGYEPDLSKPVD 390 >gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-134-V-Col7a] gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-134-V-Col7a] Length = 523 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/366 (40%), Positives = 229/366 (62%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +S V+ A+ D G+ +PTPIQ + IP+ + D+ G AQTGTGKTA+F LP + Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP---V 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+ R + +IL PTRELA QVA+ K + ++T + GG Q + L++ Sbjct: 62 LERVDGSNRHVQVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH +RG + +++I+V+DEAD ML+MGF+ I I +P QTLL Sbjct: 122 PQIIVATPGRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E +L P I + T + IE ++ Q +K +L +L Q Sbjct: 182 FSATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEV--QDRQKFDVLCRLFDLQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIF K+ V + +L+K+G+ IHG++ Q+ R ++ F+EGTI ++VA+ Sbjct: 240 -APELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y HR+GRTGRAG+ G+A+T V +I+H+ AIE+ Sbjct: 299 DVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAIER 358 Query: 363 LIEKKV 368 L ++K+ Sbjct: 359 LTKRKI 364 >gi|114329100|ref|YP_746256.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1] gi|114317274|gb|ABI63334.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1] Length = 402 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 159/399 (39%), Positives = 237/399 (59%), Gaps = 11/399 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ ++ A+ A + KPTPIQ IP +L+ D+ GIAQTGTGKTA+F LP+L Sbjct: 6 FDSFGLAEPILQALQAASFHKPTPIQAGAIPPLLEGRDLLGIAQTGTGKTAAFSLPLLQH 65 Query: 63 LEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R R R R LIL PTRELA Q+ DN G + L++GG+ + Q ++++ Sbjct: 66 LMQKRERPRAFSTRALILAPTRELAVQIDDNLRMLGGELPIRRVLILGGVGRKPQVQRMQ 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGAD++I TPGRI D + +LL++ + V+DEADRMLD+GF+ I+ + + +P RQ+ Sbjct: 126 RGADIVIGTPGRICDLMSTNELLLDQVSHFVLDEADRMLDLGFMRDIRKVLASLPEKRQS 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239 LLFSATM E+ +++E L+NP R+ + T + I +H + + + K LL +LL Sbjct: 186 LLFSATMPGEIGRLAEGLLRNPARVRIAVEEPTPDRIAQHVH---FIESTGKRVLLTRLL 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ I+F K + LE+ G AIHGN Q +R + L F+ G +++ Sbjct: 243 ADR-ALEKVIVFTRTKHGANRVAEHLEESGIPADAIHGNKSQNARQRALERFRSGEARVL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV NF++PN E+Y+HRIGRT RAG+ G A + + + A Sbjct: 302 VATDIAARGIDVAGVSHVVNFELPNEPESYVHRIGRTARAGQRGIAISFCDGSERPFLKA 361 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398 IEKL K+ G S L P E + + AR++ P Sbjct: 362 IEKLTRVKMSVAGGVESDL--PAE--EPRKQPQARRHRP 396 >gi|332525252|ref|ZP_08401425.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332108534|gb|EGJ09758.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 520 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 149/364 (40%), Positives = 223/364 (61%), Gaps = 13/364 (3%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR----- 69 AV DAGY PT +Q + IP L D+ + TG+GKTASFVLP LT + R Sbjct: 8 AVADAGYTTPTEVQSRAIPPALGGADLMVSSSTGSGKTASFVLPALTRILAARGDGKRRE 67 Query: 70 ---VRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADV 125 V PR L+L PTRELA QVA YG++ L VA ++GG+P+ AQ K L DV Sbjct: 68 KGVVSGPRILVLAPTRELAMQVAKATNDYGRHVQGLRVATIVGGVPYGAQLKALRGPLDV 127 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 LI TPGR++DH G+ ++ N+E+LV+DEADRMLDMGFI I +I S P RQT+++SA Sbjct: 128 LIATPGRLMDHMASGRAVLANVEMLVLDEADRMLDMGFIDDIHHIASATPAARQTVMYSA 187 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ-YSKKCALLQQLLQSQDT 244 T + +++E L+ P+RIE+ + + IE +A ++ K ALL +L ++ + Sbjct: 188 TFAGHVGRLAEELLREPQRIEIASHTDVHADIEQRL--HWADNFAHKNALLDHIL-TERS 244 Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304 ++ ++F + +++ L L + G V ++HG Q R ++L + ++++VA+D+ Sbjct: 245 VEQAVVFTSTQRDADWLADRLAEMGHHVASLHGGHPQGRRNRVLQGLRSRDLKILVATDV 304 Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 AARG+D+P + HV NF +P +AE+Y+HRIGRTGRAGR G A TL + D I I++ Sbjct: 305 AARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRSGLAVTLAERGDAGMIHRIQRFT 364 Query: 365 EKKV 368 +++ Sbjct: 365 TQRI 368 >gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA] gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1] gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA] gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1] Length = 443 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 160/419 (38%), Positives = 244/419 (58%), Gaps = 20/419 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS + AV G+ PTP+Q + IPLVL+ DV A TGTGKTA+F LP+ Sbjct: 34 FQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFER 93 Query: 63 LEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + GRA R PR L++ PTRELA Q+ + K N + ++GG ++ Q KL+R Sbjct: 94 I--GRAKRPGSPRALVVSPTRELAQQIDAACTQLAKASNRRMLTVMGGTKYKGQIAKLDR 151 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVL+ TPGR+ D RG + + ++E+LV+DEADRMLDMGF P ++ + + P +RQTL Sbjct: 152 GIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSSRQTL 211 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ + + L++P +EV+ TA+TI+ + KK LL+ +LQ Sbjct: 212 LFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPM--KKPELLRLVLQQ 269 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + K I+F + K L++ GF +IH + Q R + L F +G I ++VA Sbjct: 270 RGS-KRVIVFTDTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLVA 328 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARG+D+ ++ +V N+D+P E+Y+HRIGRTGRAG G A + V+ E + IE Sbjct: 329 TDVLARGIDVSNIEYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPEAKAQLLDIE 388 Query: 362 KLIEKKVDWLNGD----------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 KL+ +++ L+ D L+S P + A + + + N ++GF RR+ Sbjct: 389 KLLGERIPTLDIDGYDATEAEKALASQFVPKATVGSAAFSRSLRRN----GASGFGRRR 443 >gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645] gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645] Length = 447 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 152/363 (41%), Positives = 219/363 (60%), Gaps = 5/363 (1%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE--K 65 LS + A+ Y PTPIQ + IP +L+ D+ G AQTGTGKTA+F LP+L L+ + Sbjct: 3 LSEAIQEALATEKYHTPTPIQGQAIPHLLEGSDLIGCAQTGTGKTAAFALPILNQLDLDR 62 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 RA P+ L+L PTRELA Q+A +F YG+N + + GG+ Q + L+RG V Sbjct: 63 SRADACAPQVLVLSPTRELAVQIAQSFNVYGRNVKFRLTTIFGGVGQNPQVRALKRGVHV 122 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 I TPGR+LD ++G + ++ + V+DEADRMLDMGF+P ++ I S +P RQT+ F+A Sbjct: 123 AIATPGRLLDLMDQGYVDLSQAKTFVLDEADRMLDMGFMPALKTIVSKLPKQRQTIFFTA 182 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245 TM ++ +++ L NP RIEV S+TAE +E + Y K ALL+ LQ++ Sbjct: 183 TMPPKVAQLASGLLNNPVRIEVAPESTTAERVEQRLM--YVSQGDKRALLEHSLQAEGVG 240 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 + ++F K L L G AIHGN Q R + L +F+ G +Q++VA+D+A Sbjct: 241 RT-LVFTKTKHGADRLAKELNASGIRTDAIHGNKTQNKRNRALESFRSGRLQVLVATDVA 299 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 ARG+D+ V HV NFD+P E+Y+HRIGRTGRAG+ G A + + + AIE+LI Sbjct: 300 ARGIDVDGVTHVVNFDLPIDPESYVHRIGRTGRAGKEGIALSFCDFSEHGTLRAIERLIR 359 Query: 366 KKV 368 + Sbjct: 360 TTI 362 >gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans PW2] gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans PW2] Length = 618 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 153/375 (40%), Positives = 223/375 (59%), Gaps = 11/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F DLGL ++ AV Y PTP+Q +IP VL + D+ AQTGTGKTA+F+LP ++ Sbjct: 59 FEDLGLPDIILKAVRGLHYTTPTPVQAASIPSVLAKRDILAAAQTGTGKTAAFLLPAMSN 118 Query: 62 ---ILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 ++ +GR+R R P+ LI+ PTRELA Q+ + ++GG+ + Sbjct: 119 LGHVVHQGRSRRSAEGRGPKMLIITPTRELAQQIDSVCTQIATRTKHIAVTVVGGVGYNP 178 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L RG D+L+ TPGR++D ++G ++ +EILVIDEADRMLDMGF+P ++ I +L Sbjct: 179 QKSALRRGCDILVATPGRLIDLIDQGVCNLSEVEILVIDEADRMLDMGFLPSVKQIVALT 238 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQTLLFSAT+ ++ + +++P R+E+ +STA+T++ FV + SK L Sbjct: 239 PPERQTLLFSATLDEKTLGSIRDLVRDPVRVEIAAATSTADTVDQ-FVLPVSFDSKNDVL 297 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ L ++ I+F K + C L G S AIHG+ Q R + L F++G Sbjct: 298 VEVL--KREGASRVIVFMRTKHRADSCCRRLTHAGISAAAIHGDRSQAQRERALKAFRDG 355 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++VA+D+ ARG+DI DV +V NFDVP +YIHRIGRTGRAG G A T V ++DI Sbjct: 356 RSDVLVATDVIARGIDISDVRYVVNFDVPGEPIDYIHRIGRTGRAGEVGWALTFVTRQDI 415 Query: 355 KHIDAIEKLIEKKVD 369 IE L+ K + Sbjct: 416 DEFYDIESLMGKTAE 430 >gi|254672936|emb|CBA07321.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha275] Length = 489 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 234/371 (63%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTFQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G+++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKV 368 ++I++L K+ Sbjct: 362 ESIKELTGNKL 372 >gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str. F0310] Length = 699 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 152/370 (41%), Positives = 216/370 (58%), Gaps = 14/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL +++ A+ D G+ PTPIQ IP +L+ DV GIAQTGTGKTA+F LP+L I Sbjct: 39 FASLGLPDEILAAITDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAI 98 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 ++ A R + L+L PTRELA Q A E + + L V + GG P+ Q L+R Sbjct: 99 VD---ADERDVQALVLAPTRELAMQSAQAIEDFAARAARLDVVPVYGGSPYGPQIGALKR 155 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D +G L ++N+ +LV+DEAD ML MGF ++ I S VP R T Sbjct: 156 GAQVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRMGFAEDVETIASAVPAQRLTA 215 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL------ 235 LFSATM ++KV+ L++P ++ V+T SST +TI + Y K L Sbjct: 216 LFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVV--PYKHKIGALCRVLAT 273 Query: 236 --QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 Q + + Q+ I+F + +V + L +GF I G++ Q R +++ K Sbjct: 274 RAQHIARGQEEADAAIVFVRTRADVEEVSLELSARGFRAAGISGDVAQTERERMVERLKT 333 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G + ++VA+D+AARGLD+ + V NFDVP E Y+HRIGRTGRAGR G+A T + Sbjct: 334 GALDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRALTFFTPRE 393 Query: 354 IKHIDAIEKL 363 + IEKL Sbjct: 394 HGRLRRIEKL 403 >gi|187931511|ref|YP_001891495.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis subsp. mediasiatica FSC147] Length = 569 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 146/363 (40%), Positives = 228/363 (62%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ ++ V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +R R P+ L+L PTRELA QVA+ FE + KN NL VA + GG + +Q + L+ Sbjct: 68 NMDLA-SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S V Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 TEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999] Length = 622 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 149/374 (39%), Positives = 232/374 (62%), Gaps = 11/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L +++ A+ GY P+PIQ ++IPL+L+ HD+ G AQTGTGKTA+F LPML Sbjct: 7 MTFKDLNLPSEILQALEKVGYETPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPML 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ++ + P+ L+L PTRELA QVA+ F+ Y + + V + GG ++ Q ++L Sbjct: 67 ANIDVEES---FPQLLVLAPTRELAIQVAEAFQVYASFSKKIRVLPIYGGQSYDNQIRQL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH R L ++ ++ LV+DEAD ML MGFI ++ I S P +Q Sbjct: 124 KRGVQVVVGTPGRVIDHIQRKTLKLDRLKFLVLDEADEMLRMGFIDDVELILSHSPKEKQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQ 237 T LFSATM ++K++E +L PK +++ + STA TI +C VA + K L + Sbjct: 184 TALFSATMPGPIKKITERYLHEPKHVKIASKVSTASTIRQRYCQVAGH----HKLEALTR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ + I+F K + L L +G+ V ++G+I Q+SR + + K G+I Sbjct: 240 ILEVEQ-FDGVIVFVRTKTATLELADKLSARGYDVEPLNGDIPQKSRERTVERLKSGSID 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+ ARGLD+ V HV NFD+P E+Y+HRIGRTGRAGR G A ++ + + + Sbjct: 299 ILIATDVVARGLDVERVSHVINFDIPYDTESYVHRIGRTGRAGRQGDAILFISHREKRLL 358 Query: 358 DAIEKLIEKKVDWL 371 IEK ++ ++ + Sbjct: 359 FQIEKTTKQSIEQM 372 >gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567] gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567] Length = 719 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/375 (40%), Positives = 231/375 (61%), Gaps = 9/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P+V+ A+ + GY KP+PIQ +TIP +L +DV G+AQTGTGKTA+F LP L+ Sbjct: 130 FTDLGLDPRVLSALEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTAAFALPALSR 189 Query: 63 ---LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L R + L+L PTRELA QVA+ F Y + + TV + GG P+ Q Sbjct: 190 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 249 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RGA V++ TPGR++DH +G L ++N++ LV+DEAD ML MGF ++ I P + Sbjct: 250 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAK 309 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM + ++K+++ +L +P + V T ++T I ++ +S K + ++ Sbjct: 310 QVALFSATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVM--HSHKLDAMTRV 367 Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ ++ +GII F KK + L+ +GF AI+G+I Q+ R + + ++G I Sbjct: 368 LEVENY--DGIIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRID 425 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + V N+D+P+ E+Y+HRIGRTGRAGR G+A V + + Sbjct: 426 ILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYML 485 Query: 358 DAIEKLIEKKVDWLN 372 IEK +KV+ ++ Sbjct: 486 RQIEKATRQKVEPMH 500 >gi|300721544|ref|YP_003710819.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061] gi|297628036|emb|CBJ88585.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061] Length = 649 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 145/368 (39%), Positives = 233/368 (63%), Gaps = 11/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 7 ISFADLGLSAPILSALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFTLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 + A ++ P+ L+L PTRELA QVA+ +F K+ ++ N V L GG ++ Q + Sbjct: 67 HNIN---AELKAPQILVLAPTRELAVQVAEACSDFSKHMRSVN--VVALYGGQRYDVQLR 121 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G +++ TPGR+LDH RG L ++N++ LV+DEAD ML MGFI ++NI S +P Sbjct: 122 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT LFSATM + +++++ F+ +P+ + + + + I + + Y +K L + Sbjct: 182 HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTNRPDISQSYWSVYG--VRKNEALVR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+++D IIF K + + +LE+ G++ A++G+++Q R + L K G + Sbjct: 240 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQTLREQTLERLKNGRLD 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 299 ILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLL 358 Query: 358 DAIEKLIE 365 IE+ ++ Sbjct: 359 RNIERTMK 366 >gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 778 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 223/371 (60%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LS ++ + + GY P+PIQ TIPL+L DV G AQTGTGKTASF LP+L Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L+L PTRELA QVA+ F++Y V + GG + AQ L R Sbjct: 69 ID---IKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +G L ++ I+ +V+DEAD ML MGFI ++ I P +RQT Sbjct: 126 GVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++ +L++P I V + TA+ I + +K L ++L++ Sbjct: 186 LFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGM--QKLDALTRILEA 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ IIF K L L+ +GFS AI+G+I Q+ R + + K+G I ++VA Sbjct: 244 EN-FDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+DVP+ E+Y HRIGRTGRAGR G+A +A + + AIE Sbjct: 303 TDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIE 362 Query: 362 KLIEKKVDWLN 372 + + + L Sbjct: 363 RATRQPISVLE 373 >gi|88857449|ref|ZP_01132092.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein family protein [Pseudoalteromonas tunicata D2] gi|88820646|gb|EAR30458.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein family protein [Pseudoalteromonas tunicata D2] Length = 435 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 234/366 (63%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +P+++ A+ + GY + +P+Q IP V + HDV AQTGTGKTA+F LP+L Sbjct: 1 MNFKSFSFAPEILRAIDECGYTELSPVQRLAIPHVRRGHDVLANAQTGTGKTAAFALPIL 60 Query: 61 -TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ RV + L+L PTRELA Q+A++FE+YGK +++VA + GG+ + Q K Sbjct: 61 QKLIDTPTPRVASNAKALVLAPTRELAEQIANSFERYGKYLDISVAAIFGGVSHKGQAIK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ GAD+++ TPGR+L+H + ++N+ LV+DEADRMLDMGFI I+ + + V R Sbjct: 121 LKAGADIIVATPGRLLEHIQMCNVSLSNVSFLVLDEADRMLDMGFINDIKMLMAAVNDER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +++ S + L+ PK ++ +STAET++H V + +K LL +L Sbjct: 181 QTLLFSATYPSSMKQFSASVLKQPKIVQATKDNSTAETVQH--VVYPVEERRKNELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ ++F N K+ ++ L + G S HG+ Q +R + L FKEG +++ Sbjct: 239 IGRKN-WHQVLVFVNMKETASSVVEELNQFGISAAVCHGDKTQGARRRALREFKEGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDI + V N D+P AE+Y+HRIGRTGRAG G+A + V++E+ + Sbjct: 298 LVATEVAARGLDIVGLERVINVDLPFLAEDYVHRIGRTGRAGNIGQAVSFVSREEEHTLA 357 Query: 359 AIEKLI 364 IE LI Sbjct: 358 NIEALI 363 >gi|254507177|ref|ZP_05119314.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16] gi|219549887|gb|EED26875.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16] Length = 388 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 156/373 (41%), Positives = 222/373 (59%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS + A+ GY KPT IQ K IP +LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MPFAKLGLSQPLTQAIQSLGYSKPTTIQTKAIPAILQGDDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG R + R LIL PTRELA Q+ YG+N +LT + GG+ + Q + L Sbjct: 61 EKLAKGETQRKKRVRALILTPTRELAQQIEQKVRDYGQNLSLTSLAMYGGVDEKPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR+LD + + + IE+LV+DEADRMLDMGFI I I +P Q Sbjct: 121 IEGVDILIATPGRLLDMYGKRAVHFEEIEVLVMDEADRMLDMGFIDDINKILDRLPTDIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++ +++ + +P I + ++ + IE + KK ALL ++ Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPFEISIAANQASKKNIEQWLITV--DKDKKSALLSHMI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +IF K L LEK+G A H Q R K+L++FK G I+ M Sbjct: 239 K-ENNWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAVRSKLLADFKAGKIKYM 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ + ARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 IATGVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IEARLGHLIERRV 370 >gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant RNA helicase(C-terminal) (rhlE-like) [Ralstonia solanacearum CMR15] Length = 613 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 150/385 (38%), Positives = 230/385 (59%), Gaps = 23/385 (5%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE- 64 LGL ++ A+ + Y +PTP+Q + IP L D+ +QTG+GKTA+F+LP + + Sbjct: 35 LGLDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISE 94 Query: 65 ------------KGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV-A 104 + R + R PR L+L PTRELA QV +YG++ V A Sbjct: 95 QPEPQRPRADGPQQRVKGRRPRPEPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCA 154 Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164 ++GG+P+ Q L R D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214 Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224 I+ I P +RQ L+FSATM +++++E ++ P+RIE+ IE T Sbjct: 215 DDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFT 274 Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284 S K LL LL+ T+K I+F K++ +L L + GFS A+HG++ Q +R Sbjct: 275 -DDLSHKQQLLDHLLRDA-TLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGAR 332 Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344 + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G Sbjct: 333 NRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGI 392 Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVD 369 A LV D IE+ +++++D Sbjct: 393 AINLVNHGDTFQWRRIERFVDRRID 417 >gi|295692132|ref|YP_003600742.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1] gi|295030238|emb|CBL49717.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1] Length = 494 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 155/396 (39%), Positives = 244/396 (61%), Gaps = 16/396 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++K ++ +I+EPTRELA Q + + G++ + V ++ GG Q + L+ Sbjct: 61 QMIDKKEKAIQ---AVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +L+ TPGR+LDH R + ++ ++ +V+DEAD MLDMGFI I++I +Q Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + ++ E F+ +PK + + TA+ IE FV A+ S+K ++ +L+ Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPKIVRIKAKELTADLIEQYFV--RAKESEKFDIMCRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + ++ Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE+L +KK +S L PP + D A H ++ Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381 >gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 586 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/362 (40%), Positives = 226/362 (62%), Gaps = 9/362 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGLS +V+ A+ D GY P+ IQ TIP +L DV G+AQTGTGKTA+F LP+L+ Sbjct: 20 FSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSN 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + + P+ L+L PTRELA QV + FE+Y + V + GG + Q L R Sbjct: 80 LDVSQ---KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRR 136 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF ++ I + P ++Q Sbjct: 137 GVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIA 196 Query: 182 LFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++++S +LQ+P+ I V N +++A T + + +Y Q K L ++L+ Sbjct: 197 LFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQ---KVDALTRILE 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + I+F K L L +G++ AI G++ Q R + + K G + ++V Sbjct: 254 TEN-FEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILV 312 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A + V + + + AI Sbjct: 313 ATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAI 372 Query: 361 EK 362 EK Sbjct: 373 EK 374 >gi|72161844|ref|YP_289501.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Thermobifida fusca YX] gi|71915576|gb|AAZ55478.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Thermobifida fusca YX] Length = 562 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 148/362 (40%), Positives = 219/362 (60%), Gaps = 5/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL P+++ A+ + GY +PT IQ + IP +L+ D+ G A TGTGKTA+F LP+L Sbjct: 12 FADLGLRPELLDALAEVGYEEPTAIQREAIPSLLEGRDLLGQAATGTGKTAAFSLPILHR 71 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L R P LIL PTRELA QV++ +YG++ + + GG P Q + LERG Sbjct: 72 LPDS-DRGDTPSALILVPTRELALQVSEALHRYGRHLKARILPIYGGQPIGRQLRALERG 130 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH RG L+++ + +V+DEAD MLDMGF I+ I VP RQT+L Sbjct: 131 VDVVVATPGRALDHIGRGTLVLDTVRTVVLDEADEMLDMGFAEDIEAIIEEVPENRQTVL 190 Query: 183 FSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM D ++ ++ L +P R+ + +P+ E A+ K AL + L Sbjct: 191 FSATMPDRIEGIARRHLTDPVRVRIARTSPAPGEEPKVRQNAYIVARPYKPAALGRVL-- 248 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++FC ++ V L +L +G+ A+HG + Q R ++++ + GT L++ Sbjct: 249 DMESPTAALVFCRTREEVDQLTETLNARGYRAEALHGGMSQEQRDRVMARLRGGTADLLI 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + HV N++VP+ E Y+HRIGR GRAGR G A TLV + + + I Sbjct: 309 ATDVAARGLDIEHLTHVVNYNVPSATETYVHRIGRVGRAGREGVAITLVEPREHRMLKTI 368 Query: 361 EK 362 ++ Sbjct: 369 QR 370 >gi|261856513|ref|YP_003263796.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2] gi|261836982|gb|ACX96749.1| DEAD/DEAH box helicase domain protein [Halothiobacillus neapolitanus c2] Length = 594 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 226/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L+ ++ +V + GY P+PIQ K+IP++L+ DV G+AQTGTGKT +F LP+L+ Sbjct: 9 FSDFALAAPLLRSVEELGYESPSPIQAKSIPVLLEGKDVLGMAQTGTGKTGAFALPLLSR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ + Y ++ + V + GG E Q + L+R Sbjct: 69 ID---INLRAPQLLVLAPTRELAIQVAEAMQAYARHLPDFHVLPVYGGQAMEPQLRGLKR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGRI DH RG L +N I+ +V+DEAD ML MGFI + I S P RQ Sbjct: 126 GVHVVVGTPGRIQDHIKRGTLKLNQIQAVVLDEADEMLRMGFIDDVDEILSKTPANRQVA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D+++++++ L+NP I + + +ST + I + A + K L ++L+ Sbjct: 186 LFSATMPDQIRRIAQRHLRNPVEIAIKSSTSTVKAINQRYWAVSGMH--KLDALTRILEV 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ IIF K L LE +G++ ++G+++Q R K + K G++ +++A Sbjct: 244 EE-FDAVIIFVRTKVATTELAEKLEARGYAASPLNGDMNQAMREKAIDRLKRGSLDIIIA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ V HV N+D+P E+Y+HRIGRTGRAGR G+A VA + + + AIE Sbjct: 303 TDVAARGIDVARVSHVVNYDIPLDTESYVHRIGRTGRAGRSGEAILFVAPREKRMLGAIE 362 Query: 362 K 362 + Sbjct: 363 R 363 >gi|227894493|ref|ZP_04012298.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis DSM 16047] gi|227863652|gb|EEJ71073.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis DSM 16047] Length = 496 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 238/384 (61%), Gaps = 14/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++K ++ +I+EPTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 61 QTIDKKEKAIQ---AIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +L+ TPGR+LDH RG + ++ ++ +V+DEAD MLDMGFI I++I +Q Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRKQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + ++ E F+ NP+ +++ TA+ I+ FV A+ S+K ++ +L+ Sbjct: 178 TLLFSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQYFVR--AKESEKFDIMCRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + ++ Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMTVLKRFREGKLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383 IE+L +KK +S L PP + Sbjct: 355 IEQLTKKK-------MSPLRPPTD 371 >gi|300933595|ref|ZP_07148851.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100] Length = 779 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 143/361 (39%), Positives = 229/361 (63%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL+ +V+ AV G+ P+PIQ +TIP++++ +DV G+AQTGTGKTA+F LP+L Sbjct: 113 FDNLGLTSEVLEAVKKVGFEAPSPIQEQTIPVLMEGNDVVGLAQTGTGKTAAFALPILAR 172 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ + R P+ L+L PTRELA QVA++FE + + + V + GG + Q L R Sbjct: 173 IDPSK---RHPQALVLAPTRELALQVAESFESFATHLGGIHVLPIYGGQAYGIQLSGLRR 229 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH N+G L ++ + +V+DEAD ML+MGF ++ I P +Q Sbjct: 230 GAHIVVGTPGRVIDHLNKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVA 289 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++S+ +L +P+ I V + T+E IE ++ + + K L ++L+ Sbjct: 290 LFSATMPAGIRRLSKQYLNDPQEITVKSTQRTSENIEQDYL--FVNHRNKLEALTRILEV 347 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K L L +GF+ AI+G+I Q R + + K+G + ++VA Sbjct: 348 TE-FEAMIMFVRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILVA 406 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+D+P+ E+Y+HRIGRTGRAGR G+A V + + + AIE Sbjct: 407 TDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPRERRLLKAIE 466 Query: 362 K 362 + Sbjct: 467 R 467 >gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026] Length = 479 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/383 (39%), Positives = 236/383 (61%), Gaps = 15/383 (3%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 + L P+++ A+ +G+ + TPIQ KTIPLVL+ DV G AQTGTGKTA+F LP+L L+K Sbjct: 1 MNLKPEILKAIKRSGFEEATPIQEKTIPLVLEEKDVIGQAQTGTGKTAAFGLPILQNLDK 60 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 ++ +I+EPTRELA Q + + G++ V ++ GG Q + L++ + Sbjct: 61 QHDSIQ---AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTPAI 117 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 L+ TPGR+LDH RG + ++ ++ +V+DEAD MLDMGFI I++I QTLLFSA Sbjct: 118 LVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLFSA 177 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245 TM + ++ E F+ +P+ +++ TA I+ FV A+ ++K +L +L+ Q+ Sbjct: 178 TMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFV--RAKENEKFDILCRLIDVQNP- 234 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 +IF K+ V L L+ +G++ IHG++ Q RM +L F++G + ++VA+D+A Sbjct: 235 DLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVA 294 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 ARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ IE+L Sbjct: 295 ARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQLTH 354 Query: 366 KKV---------DWLNGDLSSLN 379 KK+ + G LS+ N Sbjct: 355 KKMMPLKPPTDEEAFKGQLSAAN 377 >gi|90577462|ref|ZP_01233273.1| putative ATP-dependent RNA helicase [Vibrio angustum S14] gi|90440548|gb|EAS65728.1| putative ATP-dependent RNA helicase [Vibrio angustum S14] Length = 432 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 161/411 (39%), Positives = 244/411 (59%), Gaps = 11/411 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G S +V A+ + GY K TP+Q K IP + D+ +AQTGTGKTA+F LP++ Sbjct: 1 MSFLSQGFSQDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPII 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++EK +++ R R LIL PTRELA Q+A+N +Y K ++ + GG Q K+ Sbjct: 61 QKLIEKPKSKSRFNVRALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSTQEKR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE+G D+L+ TPGR+++H + + N+E LV DEADRMLDMGFI I+ I + Sbjct: 121 LEQGVDILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILDDIRTKP 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT + ++ ++ + L P+RI V +STA+TI H V +K +L +L Sbjct: 181 QTMLFSATSSAQMNSLASDILHKPQRITVTPENSTADTIAH--VVYPVDEDRKREMLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ K ++F N K+ L L+ G HG+ Q +R + L FKEG ++ Sbjct: 239 IGKKN-WKQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+++AARGLDI ++ +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 298 MVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTLV 357 Query: 359 AIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKS 403 IE+LI + +V + + S + LE++ RKNNP +S Sbjct: 358 QIERLIGQRIHRVQLIGYEPKSRDALLERMHSKPAFSQREGRKNNPTQDQS 408 >gi|294661382|ref|YP_003573258.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus 5a2] gi|227336533|gb|ACP21130.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus 5a2] Length = 575 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 10/369 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F ++GLSP + A+ + +PT IQ K IPL LQ+ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFQEMGLSPVLTQALDKLSFTQPTAIQAKAIPLALQQKDILGSAQTGTGKTLAFAIPLIN 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 L + LIL PTRELA QVA N + K+ + ALLIGG P+ Q +L Sbjct: 63 KLLSDPTSM----GLILTPTRELAQQVATNINQLLFKSSFIKTALLIGGEPYNKQLAQLR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH RG +I+ L++DE DRM DMGF ++ I S +P RQT Sbjct: 119 SNLRIIIGTPGRVIDHLERGSFNPKDIDFLILDETDRMFDMGFSIQLEQIVSQLPTQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L+FSAT +++K++ ++Q+P+RI +N S A ++ + + +K LL QL Sbjct: 179 LMFSATFPPKVEKLAAKYMQSPERIFMNEFDSMAIVAQNLTQEILEIKEENKYFELLTQL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + T+ ++F K N +L L K+ ++ CAIHGN+ Q R +++ F++G Q+ Sbjct: 239 NSREGTI---LVFVKTKDNAEHLSLRLNKEAYNTCAIHGNLRQTKRERVMRAFRQGRHQI 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLD+P V HV N+D+P+ E+Y+HRIGRT RAG G A + V+ +D K + Sbjct: 296 MVATDIAARGLDVPHVKHVINYDIPHAPEDYVHRIGRTARAGAKGFALSFVSSQDRKRWN 355 Query: 359 AIEKLIEKK 367 AI+ L+ K Sbjct: 356 AIQDLLNPK 364 >gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix cholodnii SP-6] gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6] Length = 502 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/379 (39%), Positives = 235/379 (62%), Gaps = 13/379 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ +V AGY PT +Q +TIP LQ D+ + TG+GKTA+FVLP L Sbjct: 1 MTFDTLGLHEAILKSVTAAGYDTPTDVQAQTIPPALQGLDLRVCSNTGSGKTAAFVLPAL 60 Query: 61 TIL-------EKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGI 110 + K RA+ ++ PR L+L PTRELA QV+ YG++ L VA ++GG+ Sbjct: 61 QRVLAARNDPSKARAKGQVCGPRVLVLAPTRELAMQVSKAASTYGQHVAGLRVATIVGGV 120 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 P+ AQ L + D+LI TPGR++DH N GK ++ ++E+L++DEADRMLDMGFI I+ I Sbjct: 121 PYPAQLAALRKPLDILIATPGRLIDHLNSGKAVLGDVEMLILDEADRMLDMGFIEDIERI 180 Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYS 229 +P RQT++ SAT ++ ++++ L+ + KRIE+ + + E IE + + Sbjct: 181 AESLPQERQTVMVSATFAGQVGRLADQILKSDAKRIEITSHTDNHENIEQQLLWADS-IE 239 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K LL+ LL ++ M+ ++F + +++ L L + G +V +HG + Q R + L Sbjct: 240 HKAKLLEHLLTERE-MQQALVFTSTQRDADELAAHLYELGHAVAPLHGGMPQGRRSRTLM 298 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 + G I++++A+D+AARG+D+P + HV NF +P +AE+Y+HRIGRTGRAGR G+A TL Sbjct: 299 ALRNGEIKVLIATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRTGRAITLA 358 Query: 350 AKEDIKHIDAIEKLIEKKV 368 + D+ I I++ + + Sbjct: 359 ERRDVGMIRRIQQFTTQTI 377 >gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] Length = 638 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/362 (41%), Positives = 226/362 (62%), Gaps = 9/362 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL LS V+ AV + GY P+ IQ TIP +L+ DV G+AQTGTGKTA+F LP+L+ Sbjct: 19 FSDLALSDAVLKAVREIGYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALPILSR 78 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ +++ P+ L+L PTRELA QV + FEKY + + V + GG + Q L R Sbjct: 79 LDVSQSK---PQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSALRR 135 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGRI+DH +G L ++ ++ LV+DEAD ML MGF ++ I + P +Q Sbjct: 136 GVHVVVGTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPEDKQVA 195 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++++S+ +L++ + I V + ++T A T + V +Y Q K L ++L+ Sbjct: 196 LFSATMPAQIRRISKKYLRDAEEITVKSQTTTSANTSQRYLVVSYPQ---KVDALTRILE 252 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + I+F K NL L +G+S AI G++ Q R + ++ K G + ++V Sbjct: 253 VEN-FEGMIVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILV 311 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV NFD+P E+Y+HRIGRTGRAGR G A + V + + + AI Sbjct: 312 ATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRERRLLTAI 371 Query: 361 EK 362 EK Sbjct: 372 EK 373 >gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] Length = 539 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 151/382 (39%), Positives = 236/382 (61%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D +S + A+ D G+ +P+PIQ K IP++L+ DV G AQTGTGKTA+F +P++ Sbjct: 4 FSDFQISEPIKRAIKDMGFEEPSPIQEKAIPVILEGGDVIGQAQTGTGKTAAFGIPVIDK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + R + LIL PTRELA QV+ +K + + + GG Q K L++G Sbjct: 64 VTEER----YVQALILTPTRELAIQVSGELQKLSAHKRIRTMPIYGGQSIGHQIKALKQG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGRILDH R L +N + +V+DEAD MLDMGF+ I++I V RQTLL Sbjct: 120 VQVVIGTPGRILDHIRRKTLQLNKVHTIVLDEADEMLDMGFVDDIESILREVKGARQTLL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++K+S ++ PK + +N TA +I+ + + K L +++ S+ Sbjct: 180 FSATMPPAIKKLSRRYMTTPKTVTINKGEVTAPSIDQLYYKVLER--NKIDSLCRIIDSE 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + GI+FC KK V L +L+ +G+ +HG++ Q R ++ F++ +I+ ++A+ Sbjct: 238 E-VDLGILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFLIAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+D+ +V HV N+D+P E+Y+HRIGRTGRAGR G A TLV ++KH+ +IE+ Sbjct: 297 DVAARGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEQ 356 Query: 363 LIEKKVDWLNGDLSSLNPPLEK 384 E K+ + D+ ++ +EK Sbjct: 357 --EIKMAIPSQDVPTIEDVVEK 376 >gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein) [Xanthomonas albilineans GPE PC73] gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein) [Xanthomonas albilineans] Length = 657 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL V+ AV + GY P+PIQ TIP +L D+ G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLCSAVMKAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + R P+ L+L PTRELA QVA+ F +Y V + GG P+ Q L+R Sbjct: 71 LDFAQ---RKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P +RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQSRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L +P + + + ++T+ I + A + K L ++L+ Sbjct: 188 LFSATMPAAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLH--KLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G+I Q R +++ K+G + ++ Sbjct: 246 EPFDAM---IIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V+ + + A Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRA 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parasanguinis F0405] gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parasanguinis F0405] Length = 536 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 235/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS +++ + AG+V+ +PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLGLEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK + + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 ---EKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +++IE L++DEAD ML+MGF+ I+ I S VP TRQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F++ P+ +++ T + ++ ++ + +K + +L+ Sbjct: 178 LLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYI--RVKEGEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++V Sbjct: 236 VEQP-ELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ + Sbjct: 355 ENLTKKRMKGM 365 >gi|315606927|ref|ZP_07881933.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574] gi|315251308|gb|EFU31291.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574] Length = 375 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 158/370 (42%), Positives = 229/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L +S ++ A+ Y PTPIQ K IP+ L+ D+ GIAQTGTGKTA+F +P++ Sbjct: 1 MTFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPII 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K R R + LIL PTRELA Q+ + F+ Y K L ++ GG+ Q K+ Sbjct: 61 QQLAKSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKE 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG D+LI TPGR+LD ++ + + +I V+DEADRMLDMGFI I+ + L+P R Sbjct: 121 LERGVDILIATPGRLLDLISQHIITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKRR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM + + K+S++ L P R+EV SS +TIE + + +K LL + Sbjct: 181 QTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLY--FVEKPQKTDLLVSV 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ D ++ ++F K + L+ + AIHGN Q +R + L+NFK G ++ Sbjct: 239 LKN-DGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ V N+D+P+ AE Y+HRIGRTGRAG G A T +E+ + Sbjct: 298 IVATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQEERPMVR 357 Query: 359 AIEKLIEKKV 368 I+KL KK+ Sbjct: 358 DIQKLTGKKL 367 >gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 640 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 230/367 (62%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 + P+ L+L PTRELA QVA+ F Y K N V + GG + Q L+R Sbjct: 68 VTSQTT----PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L +++++ LV+DEAD ML MGFI I+ I P RQ Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L+NP + + + +T E+IE FV +Q++K AL++ +L+ Sbjct: 184 LFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQV-SQHNKLEALVR-VLEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 242 ENT-EGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P AE Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360 Query: 362 KLIEKKV 368 + ++ Sbjct: 361 RSTNSRI 367 >gi|327403899|ref|YP_004344737.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola taffensis DSM 16823] gi|327319407|gb|AEA43899.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM 16823] Length = 375 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 235/370 (63%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L P ++ A+ + Y PTPIQ ++IP +LQ D+ G AQTGTGKTA+F LP+L Sbjct: 1 MQFDELNLLPHLLDALKELEYTTPTPIQEQSIPSLLQGKDLFGCAQTGTGKTAAFALPIL 60 Query: 61 TILE-KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ G+ + + P R L+L PTRELA Q+ D+F+ YGK+ L ++ GG+ Q + Sbjct: 61 QHLDPDGQVKGKRPIRCLVLAPTRELANQINDSFKSYGKHSKLRSMVIFGGVNQNKQVNQ 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+L+ TPGR+LD N+G + ++ I V+DEADRMLDMGFI I+ I +P + Sbjct: 121 LNAGIDILVATPGRLLDLMNQGHIQLSKITHFVLDEADRMLDMGFIHDIKKILPRLPKNK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q + FSAT++ + +++ L +P + V SSTAE +E FV Y + + K L+QL Sbjct: 181 QNIFFSATISPTIMELAGTILFDPVNVRVTPVSSTAEIVEQ-FV-YYVEKADKRNFLKQL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++++ + + I+F K + L K G AIHG+ Q +R + L+ FK T+ Sbjct: 239 IKTEN-ISHAIVFTRTKHGADRVARELTKSGLKAEAIHGDKSQNARERALAGFKNRTVSF 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RG+DI + +V NF++P AE Y+HRIGRTGRAG G A+TL + E+ ++ Sbjct: 298 LIATDIASRGIDIDLLEYVINFEIPEVAETYVHRIGRTGRAGASGIAYTLCSSEEKAYLK 357 Query: 359 AIEKLIEKKV 368 AI+KLI +++ Sbjct: 358 AIQKLINQQI 367 >gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886] gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886] Length = 410 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 157/370 (42%), Positives = 234/370 (63%), Gaps = 14/370 (3%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILE---KGRARVRMPRT 75 GY PT IQ + IP VL DV G AQTGTGKTA+F LP++ +LE KG ARV Sbjct: 21 GYSDPTAIQQQAIPHVLDGKDVMGAAQTGTGKTAAFALPVIHQLLERGVKGAARV----- 75 Query: 76 LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135 L++ PTRELA QV + +Y ++ +L L GG Q +L + ++++ TPGR+LD Sbjct: 76 LVVTPTRELAQQVYEKVVEYSQHTSLKCVALYGGANINPQKNQLTKKPEIIVGTPGRLLD 135 Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195 H + G L +N+++ L++DEADRMLDMGFI I+ + +P TRQTL FSAT ++ ++ Sbjct: 136 HLHIGTLTLNSLDTLILDEADRMLDMGFISDIKRLMKKMPKTRQTLFFSATYPKQVVDLA 195 Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255 L NP RIEV+T +STAET+ +K LL L+ S++ ++ ++F + Sbjct: 196 YRLLSNPVRIEVSTANSTAETVNQLVHPV--DKKRKRELLSYLIGSRN-LQQVLVFAKTR 252 Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315 ++ L + L+ G AIHG Q +R ++L FK G ++++VA+D+AARGLDIP + Sbjct: 253 QSTEALANELKLDGLKAEAIHGEKTQGARNRVLEGFKSGEVRVLVATDVAARGLDIPSLD 312 Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLNG 373 VFN+++P++ E+YIHRIGRTGRAG+ G A +LV++E+ + AIE LI+ ++ +WL G Sbjct: 313 TVFNYELPHQPEDYIHRIGRTGRAGKPGMAISLVSREEEGMLTAIETLIDLRLPQEWLAG 372 Query: 374 DLSSLNPPLE 383 L+ +E Sbjct: 373 YEPDLHADME 382 >gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|304411613|ref|ZP_07393226.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307306611|ref|ZP_07586353.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|304350140|gb|EFM14545.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306910579|gb|EFN41008.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 640 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 230/367 (62%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 + P+ L+L PTRELA QVA+ F Y K N V + GG + Q L+R Sbjct: 68 VTSQTT----PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L +++++ LV+DEAD ML MGFI I+ I P RQ Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L+NP + + + +T E+IE FV +Q++K AL++ +L+ Sbjct: 184 LFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQV-SQHNKLEALVR-VLEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 242 ENT-EGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P AE Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360 Query: 362 KLIEKKV 368 + ++ Sbjct: 361 RSTNSRI 367 >gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 581 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 235/373 (63%), Gaps = 9/373 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L L + V + GY P+PIQ + IPL+L+ DV G+AQTGTGKTA+F LP+L Sbjct: 15 NFTELNLPEALTKVVSELGYETPSPIQAQCIPLLLEGKDVLGLAQTGTGKTAAFALPLLA 74 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + P+ L L PTRELA QVA+ F+ Y ++ V + GG ++ Q K+L+ Sbjct: 75 NID---INLNQPQVLALAPTRELAIQVAEAFQTYARHLRGFHVLPIYGGQSYDIQFKQLK 131 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGRI+DH R L ++NI+ L++DEAD ML MGFI ++ I +P RQT Sbjct: 132 RGPQVVVGTPGRIMDHLKRKTLDLSNIKTLILDEADEMLRMGFIDDVETIMKEMPDKRQT 191 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLL 239 LFSATM D+++++++ ++ +P +++ + +ST E IE C++ + K L ++L Sbjct: 192 ALFSATMPDQIKRITKRYMNSPTEVKIQSKTSTVENIEQKCWI---VRGVNKLDALTRML 248 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++ IIF K V L LE +G+ A++G+++Q+ R + ++ K G + ++ Sbjct: 249 ETEE-YDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERTIARLKSGGLDIL 307 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + V N+D+P E+Y+HRIGRTGRAGR GKA A + + + A Sbjct: 308 VATDVAARGLDVERLSLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPRERRLLKA 367 Query: 360 IEKLIEKKVDWLN 372 IE+ +++ ++ Sbjct: 368 IERATRQEITIMD 380 >gi|312130956|ref|YP_003998296.1| dead/deah box helicase domain protein [Leadbetterella byssophila DSM 17132] gi|311907502|gb|ADQ17943.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila DSM 17132] Length = 428 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 152/372 (40%), Positives = 233/372 (62%), Gaps = 7/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+ +++ AV + GY +PT IQ K IP++ HDV GIAQTGTGKTA+++LP+L Sbjct: 5 FKDLDLNKQLIMAVEELGYTEPTEIQEKAIPIIQAGHDVLGIAQTGTGKTAAYLLPVL-- 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ A+ + R L+L PTREL Q+ + K +L + L GG+ + Q + L++G Sbjct: 63 MKVKYAQGQNMRALVLAPTRELVMQIHEAAVGLAKYTDLRMVALYGGLGPKTQMENLKKG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D++I TPGR +D + G++ + +++ L++DEAD+M+DMGF+P I+ I ++P R+ LL Sbjct: 123 VDIIIATPGRFMDLYRMGEIPVKSLQYLILDEADKMMDMGFMPQIRQILEVIPRKRKNLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++++SE FL+ P +IEV TPS+TA + + + K LL L ++ Sbjct: 183 FSATFQPRVERLSEEFLEAPYKIEV-TPSATAASTVEQHIYRLPNFKTKINLLGYLFENT 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS---VCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + IIFC K N+ LE++ + +H N Q +R+ +++FK G IQ++ Sbjct: 242 E-IPRAIIFCRTKAVADNVYKFLERKVIGSGKIRVLHANKGQNTRINAINDFKSGEIQVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 V++D+AARG+D+ V HV NFDVP E+Y+HRIGRTGRA G A T V K + HI+ Sbjct: 301 VSTDVAARGIDVSGVSHVINFDVPLVYEDYVHRIGRTGRAKSEGIALTFVLKHEEFHIER 360 Query: 360 IEKLIEKKVDWL 371 IEKLI + L Sbjct: 361 IEKLIRNPIPEL 372 >gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 589 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/365 (41%), Positives = 225/365 (61%), Gaps = 11/365 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL V+ + D GY P+ IQ TIPL+L+ DV G+AQTGTGKTA+F LP+L Sbjct: 17 LTFADLGLDRAVLAVLKDVGYETPSAIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPIL 76 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118 + L+ + + P+ L+L PTRELA QVA+ FE Y + V LL GG + Q Sbjct: 77 SRLDLSQ---KSPQALVLAPTRELALQVAEAFESYATHLK-GVHLLPVYGGQGYGVQLSA 132 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG +++ TPGRI+DH ++G L ++ ++ LV+DEAD ML MGF ++ I + P + Sbjct: 133 LRRGVHIVVGTPGRIMDHLDKGTLDLSGLKHLVLDEADEMLKMGFAEDVEKILADTPDDK 192 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYSKKCALLQQ 237 Q LFSATM +++++S+ +L +P+ + V ++T A T + V +Y+Q K L + Sbjct: 193 QVALFSATMPAQIRRISKKYLHDPEEVTVKARTTTSANTTQRYLVVSYSQ---KVDALTR 249 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ ++ + I+F K L L +G+S AI G++ Q R + + K G + Sbjct: 250 ILEVEN-FEAMIVFVRTKNETETLAERLRARGYSAAAISGDVAQAQRERTVGQLKSGKLD 308 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV NFD+P E+Y+HRIGRTGRAGR G A + V + + + Sbjct: 309 ILVATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGAAISFVTTRERRLL 368 Query: 358 DAIEK 362 AIEK Sbjct: 369 TAIEK 373 >gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus GRL 1112] gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus 30SC] gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus GRL 1112] gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus 30SC] gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus GRL 1118] Length = 497 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 240/384 (62%), Gaps = 14/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++K + + + +I+EPTRELA Q + + G++ + V ++ GG Q + L+ Sbjct: 61 QTIDK---KEKAIQAIIIEPTRELAIQTQEELFRLGRDEHTHVQVVYGGADIGRQIRSLK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +L+ TPGR+LDH RG + ++ ++ +V+DEAD MLDMGFI I++I +Q Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTINLDKVKAVVLDEADEMLDMGFIQDIESILKYAKNRKQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + ++ E F+ +PK +++ TA+ I+ FV A+ S+K ++ +L+ Sbjct: 178 TLLFSATMPKPILRIGEKFMNHPKIVQIKAKELTADLIDQYFVR--AKESEKFDIMCRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + ++ Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLE 383 IE+L +KK +S L PP + Sbjct: 355 IEQLTQKK-------MSPLRPPTD 371 >gi|227496195|ref|ZP_03926501.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434] gi|226834278|gb|EEH66661.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434] Length = 762 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 152/392 (38%), Positives = 232/392 (59%), Gaps = 15/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ AV D GYV PT IQ + IP++L DV G+AQTGTGKTA+F LP+L Sbjct: 124 FADLGLPADLLKAVTDMGYVTPTAIQREAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDA 183 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ AR + L+L PTRELA Q A+ + ++ L V + GG P+ Q L+ Sbjct: 184 VD---ARDGEVQALVLAPTRELALQSAEAITDMASRSRGLDVVAVYGGAPYGPQIGALKS 240 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D ++G L + + V+DEAD ML MGF ++ I + +P R+T Sbjct: 241 GAQVVVGTPGRVIDLIDKGALRLGAVRYFVLDEADEMLRMGFAEDVETIAASLPAERRTA 300 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +Q V+ L +P R+EV+ SST +T+ + + K + ++L + Sbjct: 301 LFSATMPPAIQAVARQHLSDPARVEVSRQSSTVDTVHQTYAVV--PFRHKVGAVSRVLAT 358 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K ++ L +G AI G++ QR R +++ + GT+ ++VA Sbjct: 359 TEA-EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRSGTLDVLVA 417 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V NFDVP AE Y+HRIGRTGRAGRHG+A T + ++ + IE Sbjct: 418 TDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIE 477 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393 +L +++ + +L P D+++H A Sbjct: 478 RLTGTRLEEI-----TLPSP---ADVSRHRAA 501 >gi|161870287|ref|YP_001599457.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis 053442] gi|161595840|gb|ABX73500.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis 053442] Length = 457 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 160/423 (37%), Positives = 252/423 (59%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G ++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1] gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1] Length = 470 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 152/362 (41%), Positives = 222/362 (61%), Gaps = 13/362 (3%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ IPL L+ DV G AQTGTGKT +F +PM+ ++ V+ LI+ Sbjct: 2 GFEEATPIQAGAIPLALEGKDVIGQAQTGTGKTTAFGIPMVEKIDVKNPNVQ---GLIIA 58 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QV++ K G++ + V + GG + Q + +++ +++ TPGR+LDH NR Sbjct: 59 PTRELAIQVSEELYKIGQDKRVNVLAVYGGQDIQRQIRAMKKNPHIIVGTPGRMLDHINR 118 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 L + N+ LV+DEAD ML+MGFI I++I VP RQTLLFSATM ++K++ NF+ Sbjct: 119 RTLKLGNVSTLVLDEADEMLNMGFIEDIESILKNVPDNRQTLLFSATMPGPIRKIANNFM 178 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 +P+ + V + T IE FV A +K +L +LL Q + + IIF K+ V Sbjct: 179 TDPETVSVKSKEMTVPHIEQYFVK--AHEKEKFDVLSRLLDVQ-SPELAIIFGRTKRRVD 235 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 L +L +G+S IHG++ Q RM +L FKEG I ++VA+D+AARGLDI V HV+N Sbjct: 236 ELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVATDVAARGLDISGVTHVYN 295 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379 FD+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +EK +K ++ + Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEKTTKK-------SMTQMK 348 Query: 380 PP 381 PP Sbjct: 349 PP 350 >gi|303251558|ref|ZP_07337732.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649556|gb|EFL79738.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 619 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 233/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL ++ AV D G+V P+PIQ +TIP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L++ PTRELA QVAD E++ KN + V + GG ++ Q + L Sbjct: 66 AQIDPTK---RHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G+ V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+Q+P+ +++ +A I + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + IIF K +++ E+ G+ A++G++ Q++R + L K G + ++ Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359 Query: 360 IEKLIEKKVD 369 IE L++K +D Sbjct: 360 IEHLMKKPID 369 >gi|304396354|ref|ZP_07378235.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] gi|304355863|gb|EFM20229.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] Length = 642 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 238/377 (63%), Gaps = 11/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ ++ GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ ++ K+ L V L GG ++ Q + L + Sbjct: 68 IDPT---VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPADHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSY---WTAYGRKTDALVRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 361 RTMKLTIPEVELPNAEL 377 >gi|126664124|ref|ZP_01735117.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38] gi|126623838|gb|EAZ94533.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38] Length = 419 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L + A+ + GY PTPIQ + IP +L D+ AQTGTGKT +F +P+L Sbjct: 1 MTFNDLKLYNNIQQALEEEGYTNPTPIQEQAIPEILLGQDLVACAQTGTGKTGAFAIPIL 60 Query: 61 TILEK--GRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 ++ K G A+ + RTL++ PTRELA Q+ ++F+ YGK N+ ++ GG+ Q Sbjct: 61 NLIHKIVGSAKKAKHIRTLVVTPTRELAIQIDESFKTYGKYTNVKSLVIFGGVNQVPQVN 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L+ G DVLI TPGR+LD +G + ++++ LV+DEAD+MLDMGFI ++ I L P Sbjct: 121 ELKMGIDVLIATPGRLLDLHKQGFIDLDHLHHLVLDEADQMLDMGFINDVKKIIKLTPDN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM ++++++ FL PK I V SSTAE + + K LL+Q Sbjct: 181 RQTLLFSATMPIAIRELADTFLTRPKYISVTPISSTAENVSQKVY--FVNKDDKRLLLKQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ ++++ N ++F K N+ L+K AIHG+ Q +R ++L FK I Sbjct: 239 LI-IEESLSNALVFTRTKHGADNIVKVLKKAHIKAEAIHGDKSQNARQRVLEQFKNKEID 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + V NFD+PN +E Y+HRIGRTGRAG G A + K++ + Sbjct: 298 ILVATDIAARGIDIEQLPFVINFDIPNISETYVHRIGRTGRAGNSGLAISFCGKDEKPYW 357 Query: 358 DAIEKLIEKKV 368 IEKLI KV Sbjct: 358 LDIEKLIRMKV 368 >gi|38233613|ref|NP_939380.1| DEAD-box helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae] Length = 680 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 229/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL ++ AV G+ P+PIQ +TIP+++Q HDV G+AQTGTGKTA+F LP+L+ Sbjct: 69 FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSR 128 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVAD+F+ + + ++ V + GG + Q L R Sbjct: 129 ID---VKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR 185 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++N+ LV+DEAD ML+MGF ++ I P +Q Sbjct: 186 GAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA 245 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S +++++P I+V + + T I ++ + K L ++L+ Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYL--NVAHRNKLDALTRILEV 303 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K + L +GFS AI+G+I Q R + + K+G + ++VA Sbjct: 304 TE-FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+D+PN E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422 Query: 362 KLIEKKV 368 + K+ Sbjct: 423 RATNAKL 429 >gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000] gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum GMI1000] Length = 608 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/388 (37%), Positives = 231/388 (59%), Gaps = 29/388 (7%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE- 64 LGL ++ A+ + Y +PTP+Q + IP L D+ +QTG+GKTA+F+LP + + Sbjct: 35 LGLDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISE 94 Query: 65 ------------KGRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV-A 104 + R + R PR L+L PTRELA QV +YG++ V A Sbjct: 95 QPEPQRPRADGPQQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCA 154 Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164 ++GG+P+ Q L R D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214 Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224 I+ I P +RQ L+FSATM +++++E ++ P+RIE+ A I+ + Sbjct: 215 DDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEI-----AAARIDQSHIEE 269 Query: 225 YAQYSKKCALLQQLLQ---SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 ++ + QQLL T+K I+F K++ +L L + GFS A+HG++ Q Sbjct: 270 RLHFTDDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQ 329 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 +R + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR Sbjct: 330 GARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 389 Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 G A LV D IE+ +++++D Sbjct: 390 SGIAINLVNHGDTFQWRRIERFVDRRID 417 >gi|16125088|ref|NP_419652.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15] gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000] gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter crescentus CB15] gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000] Length = 476 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/368 (40%), Positives = 224/368 (60%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGL+ ++ A+ + GY +PTPIQ + IP+VLQ D+ GIAQTGTGKTA+F LP+L Sbjct: 4 FSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQR 63 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R A R R L+L PTRELA Q+A+NF+ Y + L+V + GG+ + Q K L Sbjct: 64 LAEDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR++DH +++ EI V+DEAD+MLD+GF+ I+ I + + RQ Sbjct: 124 GGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTKNRQN 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ K++ L NP ++ V ++T E I+ + AQ +K LL +L Sbjct: 184 LFFSATMPSEIGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQ--RKRPLLAELF- 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ + L G +IHG+ Q R + L+ FK G ++ +V Sbjct: 241 ADTSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HV N+++PN E Y+HRIGRT R G+ G A + A ++ + I Sbjct: 301 ATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKDI 360 Query: 361 EKLIEKKV 368 +K + + Sbjct: 361 QKATRQTI 368 >gi|91227745|ref|ZP_01261972.1| RhlE [Vibrio alginolyticus 12G01] gi|269967907|ref|ZP_06181947.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 40B] gi|91188392|gb|EAS74687.1| RhlE [Vibrio alginolyticus 12G01] gi|269827430|gb|EEZ81724.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 40B] Length = 402 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 152/362 (41%), Positives = 222/362 (61%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV GY KPT IQ K IP+VL+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSASIADAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R +IL PTRELA QV + E YGKN L + GG+ + Q + L Sbjct: 61 EKLSRGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR++D + + + + +E+LV+DEAD+MLDMGFI I I +P Q Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDAIDKIVDCMPEHVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT+++ ++ +++N + +P+ I + S++ I+ T K +LL LL Sbjct: 181 SLLFSATLSNPVRDLAKNAIIDPEEITIAKHSASKSNIKQWI--TTVDKDMKSSLLSHLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++F K L LEK+G A H +QR R +++ FK G IQ + Sbjct: 239 KEND-WSQVLVFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 599 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 229/371 (61%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNA 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R +P+ L+L PTRELA QVA+ F Y K L V + GG Q L R Sbjct: 68 IDPNR---NVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNALRR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH RG L + + LV+DEAD ML MGFI I+ I P RQ Sbjct: 125 GPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ +LQ P I + +T E+IE FV +Q++K AL++ +L+ Sbjct: 185 LFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQV-SQHNKLEALVR-VLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 243 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 302 TDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361 Query: 362 KLIEKKVDWLN 372 + + ++ +N Sbjct: 362 RATKSRISPMN 372 >gi|300718571|ref|YP_003743374.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661] gi|299064407|emb|CAX61527.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661] Length = 645 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 238/377 (63%), Gaps = 11/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ +++ ++ GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + ++ P+ L+L PTRELA QV + + K+ L V L GG ++ Q + L + Sbjct: 68 ID---SSLKAPQILVLAPTRELAVQVGEAITDFSKHMKGLNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDNHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSY---WTAFGRKTDALTRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V NFD+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 301 TDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 361 RTMKLTIPEVELPNAEL 377 >gi|165975989|ref|YP_001651582.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876090|gb|ABY69138.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 619 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 233/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL ++ AV D G+V P+PIQ +TIP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L++ PTRELA QVAD E++ KN + V + GG ++ Q + L Sbjct: 66 AQIDPTK---RHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G+ V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+Q+P+ +++ +A I + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + IIF K +++ E+ G+ A++G++ Q++R + L K G + ++ Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359 Query: 360 IEKLIEKKVD 369 IE L++K +D Sbjct: 360 IEHLMKKPID 369 >gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33] gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33] gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84] gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7] gi|253756028|ref|YP_003029168.1| DEAD box helicase family protein [Streptococcus suis BM407] gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33] gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33] gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84] gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407] gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7] gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14] Length = 514 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 230/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS ++ AV AG+ P+PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ +LI+ PTRELA Q + K+G+ + V + GG E Q K L Sbjct: 61 NKIDTNNQAIQ---SLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++ +E L++DEAD ML+MGF+ I+ I VP +RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F++ P+ +++ T ++ ++ + +K + +L+ Sbjct: 178 LLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYYL--RVKEHEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 EDLTKKRMKGL 365 >gi|227112581|ref|ZP_03826237.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 627 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 237/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L + ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L Sbjct: 68 L---KPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRG 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 125 GAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+++P+ + + + +T I + Q +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTV--QGMRKNDALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++++ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu003] gi|308331209|gb|EFP20060.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu003] Length = 563 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 221/361 (61%), Gaps = 9/361 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P+V+ A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +PML+ Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ ++P+ L+L PTRELA QVA+ F +YG + L V + GG + Q L R Sbjct: 75 ID---ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++ ++ LV+DEAD ML MGF ++ I S P +Q Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+S +L +P + ++ E I ++ Q ++K L ++L+ Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVDENISQSYI----QVARKMDALTRVLEV 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI G++ Q R + ++ ++G I ++VA Sbjct: 248 E-PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ ++ + AIE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 362 K 362 K Sbjct: 367 K 367 >gi|242240743|ref|YP_002988924.1| ATP-dependent RNA helicase DeaD [Dickeya dadantii Ech703] gi|242132800|gb|ACS87102.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703] Length = 621 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 236/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLSAPILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 + ++ P+ L+L PTRELA QVA+ ++ K+ + + V L GG ++ Q + L + Sbjct: 68 VNP---ELKAPQILVLAPTRELAVQVAEACGEFSKHMHGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPDGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+ +P+ + + + +T I + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALIRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++++ Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|157375528|ref|YP_001474128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157317902|gb|ABV37000.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 462 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/373 (41%), Positives = 231/373 (61%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ + GY+ PTPIQ + IPL L+ ++ AQTG+GKTA+FVLP+L Sbjct: 1 MSFSTLGLSAPILNAISELGYLTPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + R + R LIL PTRELA QV + E YGKN NL + GG+ + Q + L Sbjct: 61 EMLARSETQRKKRARALILTPTRELAVQVCKSIEVYGKNLNLKSIAIYGGVDYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR+ D + + + + IE+LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IDGVDIVVATPGRLRDLYTQRAIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ ++++++++ + N ++ N + I+ + KK ALL L+ Sbjct: 181 NLLFSATLSRQVRELAKDTVSNAIQLSFNKERAGKPNIDQWLITV--DKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ + +IF K L LEK+G IH Q R KIL++FK G I+ + Sbjct: 239 -NENNWQQALIFIETKHGAGKLVSQLEKRGIEAECIHSGRTQAIREKILADFKTGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++ ++ARG+DI + V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 ISTGVSARGIDIDVLPLVINYDLPFPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE+ LIE+KV Sbjct: 358 IERRLDHLIERKV 370 >gi|301059813|ref|ZP_07200707.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium NaphS2] gi|300446139|gb|EFK10010.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium NaphS2] Length = 429 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 222/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F P+V V+ AGYV PTPIQ + IP VL HD+ G+AQTGTGKTA+FVLP+L Sbjct: 1 MNFKTFNFHPRVAAGVVAAGYVDPTPIQARAIPQVLDNHDIMGVAQTGTGKTAAFVLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +++ R LI+ PTRELA Q+ E G+ ++ + GG+ Q + L+ Sbjct: 61 HRLMAKKSK--GVRALIMAPTRELAEQIHQAIEVLGRETHVKSVTVYGGVGIHPQIENLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 A +++ PGR+LDH NR + + +E+LV+DEAD+M DMGF+P I+ I + +P RQT Sbjct: 119 H-AHIVVACPGRLLDHMNRKTVDFSRLEMLVVDEADQMFDMGFLPDIRRILARLPKKRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++ + L NP +++ + AET+ H A Y L L Sbjct: 178 LLFSATMPPEIRRLEGDILINPSMVQIGA-VAPAETVRH---ALYPVPHHLKTALLLKLL 233 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +K+ ++F K +L L G+ ++ GN+ Q R L F++GT +++V Sbjct: 234 GDTVVKSVLVFTRTKYRAKSLGKKLVSAGYPCASLQGNLSQGRRQAALEGFRDGTYKILV 293 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI V HV N+D+P+ E YIHRIGRTGRA R G+AFT + ED + AI Sbjct: 294 ATDIAARGIDITRVSHVINYDIPSTPEAYIHRIGRTGRATRSGEAFTFMTGEDKGMVRAI 353 Query: 361 EKLIEKKVD 369 ++++ ++ Sbjct: 354 NRILDASIE 362 >gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus H10] Length = 499 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 236/372 (63%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++K ++ +I+EPTRELA Q + + G++ + V ++ GG Q + L+ Sbjct: 61 QSIDKKEKAIQ---AIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +L+ TPGR+LDH RG + ++ + +V+DEAD MLDMGFI I++I V +Q Sbjct: 118 HHVPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIQDIESILKYVKNCKQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + ++ E F+++P +++ TA+ I+ FV A+ S+K ++ +L+ Sbjct: 178 TLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVR--AKESEKFDIMCRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + ++ Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMRT 354 Query: 360 IEKLIEKKVDWL 371 IE+L +KK+ L Sbjct: 355 IEQLTKKKMSPL 366 >gi|320014325|gb|ADV97896.1| putative ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 451 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 163/400 (40%), Positives = 244/400 (61%), Gaps = 12/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY+ PTPIQ + IP+VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 TILE------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L KGR R R LIL PTRELAAQ+ +N + Y K L ++ GG+ Sbjct: 61 QLLSQDQQPIKGR---RPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D+L+ T GR+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + + Sbjct: 118 QMMKLRGGVDILVATHGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +DE++ ++ L NP +EV ++ +E I + ++K L Sbjct: 178 PAKRQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSV--HFVDKNRKREL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L Q++ + + ++F K +L L K G + AIHGN Q +R + L++FK+G Sbjct: 236 LSQMI-GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+AARGLDI + HV N+++PN E+Y+HRIGRTGRA R G+A +LV ++ Sbjct: 295 KIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEH 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K + IE+L+++++ + D +P ++ I R Sbjct: 355 KLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGR 394 >gi|188532510|ref|YP_001906307.1| ATP-dependent RNA helicase DeaD [Erwinia tasmaniensis Et1/99] gi|188027552|emb|CAO95399.1| Cold-shock DEAD-box protein A [Erwinia tasmaniensis Et1/99] Length = 636 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 237/377 (62%), Gaps = 11/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ ++ GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 11 FADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ + K+ L V L GG ++ Q + L + Sbjct: 71 IDP---TVKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQ 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 128 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 188 LFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSY---WTAYGRKTDALTRFLEA 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 363 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 364 RTMKLTIPEVELPNAEL 380 >gi|91792246|ref|YP_561897.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91714248|gb|ABE54174.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 433 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 229/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY TP+Q + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MKFESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + + V+ R LIL PTRELAAQVADN Y K+ N++V + GG+ Q +K Sbjct: 61 QKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++GAD+++ TPGR+L+H L ++N+E LV+DEADRMLDMGF IQ I V R Sbjct: 121 LKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++K++ + L PK I + ++TA T+ V + +K LL +L Sbjct: 181 QNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +++ + ++F + + L L G +HG Q SR + L F EG +++ Sbjct: 239 IGTKN-WQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDI + +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + + Sbjct: 298 LVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +K+ Sbjct: 358 DIEKLIGQKI 367 >gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei F0415] gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei F0415] Length = 521 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 232/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ ++ AV AG+V+P+PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELHLAEDILQAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++ L++ PTRELA Q + ++G+ + V + GG + Q K L Sbjct: 61 NKIAIDNNVIQ---ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L +N++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISHVPDERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++ F++ P+ +++ T++ +E ++ + +K + +L+ Sbjct: 178 LLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYI--RVKEREKFDTMTRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ V L L+ +G+ IHG++DQ R++++ +FK + ++V Sbjct: 236 IEQP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ GK+ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKRMKGL 365 >gi|219851679|ref|YP_002466111.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris E1-9c] gi|219545938|gb|ACL16388.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris E1-9c] Length = 550 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 227/368 (61%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+S ++ A++D G+ +PTPIQ IPL+ Q DV G AQTGTGKTA+F +P L Sbjct: 29 FEALGISKEIQRAIVDLGFEEPTPIQQMAIPLIHQGFDVIGQAQTGTGKTAAFGIPTL-- 86 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120 EK + + LIL PTREL Q+A+ K + Y +A+L GG P E Q L Sbjct: 87 -EKIDPLDKHVQALILSPTRELTIQIAEELSKLAR-YRRGIAILPIYGGQPIERQFDALR 144 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V+I TPGR++DH RG L+ ++++ +V+DEAD MLDMGF I+ I P RQT Sbjct: 145 RGVQVVIGTPGRVMDHMRRGTLVFDHVKTVVLDEADEMLDMGFRDDIELILKTTPSDRQT 204 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM+ + ++++ F ++PK ++V T +E + + S K L +LL Sbjct: 205 TLFSATMSQPILELTKRFQKSPKMVKVTHKELTVAAVEQIYYE--VRESLKLEALARLLD 262 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K +IFCN K+ V L L+ +G++ A+HG++ Q R +++ F+ G I ++V Sbjct: 263 IYNP-KLTLIFCNTKRRVDELVGQLQVRGYAAEALHGDLKQSQRDRVMGRFRSGGIDILV 321 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ VFN+D+P E Y+HRIGRTGRAGR G+AFT V+ ++I I I Sbjct: 322 ATDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGRTGRAFTFVSGKEIWKIRDI 381 Query: 361 EKLIEKKV 368 ++ +V Sbjct: 382 QRYTNTRV 389 >gi|15677281|ref|NP_274434.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58] gi|7226661|gb|AAF41783.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58] gi|316985805|gb|EFV64748.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis H44/76] gi|319410671|emb|CBY91048.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE 2594] gi|325128474|gb|EGC51354.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis N1568] gi|325130493|gb|EGC53250.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis OX99.30304] gi|325136534|gb|EGC59138.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M0579] gi|325140373|gb|EGC62894.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis CU385] gi|325199961|gb|ADY95416.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis H44/76] Length = 457 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 160/423 (37%), Positives = 252/423 (59%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G ++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|307721464|ref|YP_003892604.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979557|gb|ADN09592.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica DSM 16294] Length = 423 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 233/370 (62%), Gaps = 9/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LG+ ++ A+ D GY +PT +Q + IPLVL + DV AQTGTGKTA+F LP Sbjct: 1 MSFEKLGIFKPLLDAINDLGYKEPTLVQTRAIPLVLGKKDVFATAQTGTGKTAAFALP-- 58 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL+K R V R +IL PTREL+ Q+ ++ Y K ++ +L+GG + Q + Sbjct: 59 -ILQKMRKHVESKGVRAIILSPTRELSIQIYEDITAYSKYMDIKTTILVGGKDLQKQREA 117 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G +++I TPGR+L+H G L + ++E+ V+DEADRMLDMGF I+ I L+P Sbjct: 118 LKKGTEIVIATPGRLLEHIENG-LSLKDVEVFVLDEADRMLDMGFTKDIRKIHPLLPKRH 176 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++K+S+ L P IE ++T +TI VA +K LL L Sbjct: 177 QTLLFSATFSDKVRKLSKLILTKPAFIETAKKNTTVDTINQ--VAYLVDTVRKAELLAYL 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S++ ++F K + L L+K G IHG+ + +R+K L+ FKEG I++ Sbjct: 235 IGSRN-FPQVLVFTRTKVSADALSEELKKDGLKCGVIHGDRTKANRLKTLNQFKEGKIRV 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGLDI ++ +V N+++P+ E+Y+HR+GRTGRAGR G+A +L+ + I Sbjct: 294 LVATDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAGREGEAISLIDIYEKYDIK 353 Query: 359 AIEKLIEKKV 368 IEKLI +K+ Sbjct: 354 DIEKLIGQKI 363 >gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca T-27] gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca T-27] Length = 594 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 154/372 (41%), Positives = 216/372 (58%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LG+ PK+ A++ GY +PTP+Q IP +L+ DV +A TGTGKTA+F LP+LT Sbjct: 16 FGALGVHPKIAEALVGLGYEEPTPVQRAAIPPLLEGKDVLALAATGTGKTAAFSLPLLTR 75 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 I EKGR P LIL PTRELA QVA+ +YGK L + GG E Q + L R Sbjct: 76 IAEKGRRAGNGPGVLILVPTRELAMQVAEAVHRYGKPLGLQALAVYGGASMELQVRALRR 135 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV+I TPGR +DH RG L+ + + +V+DEAD MLDMGF ++ I P +QT Sbjct: 136 GVDVVIATPGRAVDHIKRGTLVFDGLSAVVLDEADEMLDMGFAEELEAILDATPENKQTA 195 Query: 182 LFSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 LFSAT+ + +++ L+ P + EV +A + +V + A K AL + Sbjct: 196 LFSATLPPRIGGIAQKHLRQPVHVKVEREVVAEGESARVRQVAYVVSRAH--KMPALARV 253 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q T + I+FC + V L +L +G A+HG + Q R +++ F+ + Sbjct: 254 LDIEQPT--SAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVD 311 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L++A+D+AARGLD+ V HV NFDVP AE Y+HRIGRTGRAGR G A T + + + Sbjct: 312 LLIATDVAARGLDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGREGVAVTFAEPRENRLL 371 Query: 358 DAIEKLIEKKVD 369 IE+ +K++ Sbjct: 372 RNIERQTGQKIE 383 >gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4] gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4] Length = 533 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 150/381 (39%), Positives = 231/381 (60%), Gaps = 13/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGL+P+++ +V G+ + TPIQ +TIPL L+ DV G AQTGTGKTA+F LPML Sbjct: 6 LKFTELGLAPELLKSVERLGFEEATPIQAQTIPLALEGKDVIGQAQTGTGKTAAFGLPML 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ L++ PTRELA Q + + ++ + V ++ GG Q + L+ Sbjct: 66 QKIDVNNRNVQ---GLVIAPTRELAIQTQEELFRLSRDKKIRVQVVYGGADISRQIRALK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R L + ++E LV+DEAD ML+MGFI I+ I VP RQT Sbjct: 123 DAPHIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+ NP+ +++ + + IE FV + +K ++ +L Sbjct: 183 LLFSATMPPAIKRIGVRFMSNPEHVQIKATTMSDSLIEQFFV--RCKDFEKFDIMTRLFD 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + IIF K+ V L LE +G+ IHG++ Q+ RM +L +FK G + ++V Sbjct: 241 VQ-TPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDILV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T + ++ ++ I Sbjct: 300 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVI 359 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 E L +K ++ L PP Sbjct: 360 EDLTKKT-------MTPLRPP 373 >gi|329120622|ref|ZP_08249285.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC BAA-1200] gi|327460846|gb|EGF07180.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC BAA-1200] Length = 455 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 149/363 (41%), Positives = 230/363 (63%), Gaps = 8/363 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ + GY PTPIQ IP VL HD+ AQTGTGKTA+F+LP L Sbjct: 4 FSSLGLGAEIVSALAEQGYETPTPIQAAAIPKVLAGHDLLAAAQTGTGKTAAFMLPALER 63 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 64 LKRYANTSASPAMHPVRMLVLTPTRELADQIDKNVQAYIKNLPLRHTVLFGGVNMDKQTA 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + IE +V+DEADRMLDMGFI I+ I ++P Sbjct: 124 DLRVGCEIVVATVGRLLDHVKQKNINFAKIETVVLDEADRMLDMGFIDDIRAIMGMLPRE 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT D ++K++++F+ P+ +EV ++ +E +A +K LL++ Sbjct: 184 RQTLLFSATFADPIRKLAQDFMNAPETVEVAAQNTANANVEQHVIAV--DTFEKRRLLER 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ D +K I+FC K++V + L+++G + +IHG+ Q++R++ L+ FKEG ++ Sbjct: 242 LIVDLD-IKQVIVFCKTKQSVDQVTRDLQRRGLAAQSIHGDKSQQTRLETLNAFKEGGLR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 301 VLVATDVAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDENEQKMF 360 Query: 358 DAI 360 +A+ Sbjct: 361 EAV 363 >gi|271499180|ref|YP_003332205.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii Ech586] gi|270342735|gb|ACZ75500.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586] Length = 624 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 237/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLS ++ A+ + GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + +A ++ P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 I---KADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+ +P+ + + + +T I + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALIRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 I KL +V+ N +L Sbjct: 362 RIMKLTIPEVELPNAEL 378 >gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565] gi|260623074|gb|EEX45945.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565] Length = 374 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 229/371 (61%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL + ++ A+ + GY+ PT IQ K IP L + D+ G AQTGTGKTASF +P++ Sbjct: 1 MTFRDLNIIEPILKAIEEKGYIAPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAIPII 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ + + + + LIL PTRELA Q+++ + Y K + ++ GG+ Q Sbjct: 61 QHLQANKETDKRQGIKALILTPTRELAMQISECIDDYSKYTRVRHGVIFGGVNQRPQVDM 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD N+G + + NIE V+DEADRMLDMGFI I+ I +P + Sbjct: 121 LRKGIDILVATPGRLLDLINQGHIHLTNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM D + ++++ L+NP +I + SST ++I+ + + + +K LL + Sbjct: 181 QTLFFSATMPDSIIALTKSLLKNPVKIYITPKSSTVDSIKQ--IIYFVEKKEKSQLLISI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ + ++ +IF K N + L K G AIHGN Q +R L NFK G ++ Sbjct: 239 LQKAED-RSVLIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+A+RG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K ++ Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQEERKLVN 357 Query: 359 AIEKLIEKKVD 369 I+KL KK++ Sbjct: 358 DIQKLTGKKLN 368 >gi|332521202|ref|ZP_08397660.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043295|gb|EGI79492.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 411 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 159/384 (41%), Positives = 234/384 (60%), Gaps = 8/384 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ ++ A+ + GY PT IQ +TIPLVL + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFKDLKLNRPLLRAIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPIL 60 Query: 61 TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + R LI+ PTRELA Q+ +NF+ Y NL ++ GG E Q Sbjct: 61 QLLYDKQDAAKNQKKVRALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G D+LI TPGR+LD + ++ ++ +E LV+DEAD MLDMGFI ++ I L P Sbjct: 121 VLRKGVDILIATPGRLLDLHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPAE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +Q LLFSATM +++++++ L NPKR+EV+ SST+ I Y KK L Sbjct: 181 KQILLFSATMPYKVEQLAKTILNNPKRVEVSQNSSTSTNINQALY--YVPKPKKIELCLH 238 Query: 238 LLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL ++T+K IIF K V L +L + + +IHG+ Q R + L+ FK+ + Sbjct: 239 LL--RNTVKGKIIIFRRTKYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEV 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++A+D+AARG+DI +V V NFD+PN E Y+HRIGRTGRAG G A++ + ++ ++ Sbjct: 297 NILIATDVAARGIDIENVDAVINFDMPNVPETYVHRIGRTGRAGNTGMAYSFCSADEKEY 356 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNP 380 I I++LI ++D + L+P Sbjct: 357 IKTIQQLINLQLDIVEDHPYPLDP 380 >gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain protein [Micromonospora sp. L5] gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5] Length = 585 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 217/367 (59%), Gaps = 3/367 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL +++ A+ GY +PTPIQ + IP +L D+ G A TGTGKTA+F LP+L Sbjct: 22 FADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQR 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + GRA P +L+L PTRELA QV++ F +YGK+ V + GG P Q + L+ G Sbjct: 82 MPVGRAEGD-PVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHG 140 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH RG L + + +V+DEAD MLDMGF I+ I P RQT+L Sbjct: 141 VDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVL 200 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSATM + ++ L +P RI + A + Y + K A L ++L Sbjct: 201 FSATMPARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDV 260 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+FC ++ V L ++ +G+ A+HG + Q R +++ + GT L+VA Sbjct: 261 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 319 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+DVP+ E+Y+HRIGR GRAGR G A TL + + + IE Sbjct: 320 TDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIE 379 Query: 362 KLIEKKV 368 ++ +++ Sbjct: 380 RVTGQRI 386 >gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM 9485] Length = 550 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLS ++ + + GY +PTPIQ + IPL+L DV AQTGTGKTA+F LPM+ Sbjct: 4 FAALGLSDALLHTLRELGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPMIEQ 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + + L+L PTRELA QVA+ +YG++ L V + GG P E Q + L +G Sbjct: 64 VTDEP----VVQALVLAPTRELAVQVAEAVHRYGRHRALRVLPIYGGQPIERQLRGLAQG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L +++ ++V+DEAD MLDMGF ++ I L P RQT L Sbjct: 120 VQVVVGTPGRVLDHLRRGTLRFDHLRLVVLDEADEMLDMGFAEELEAILQLTPAERQTAL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +Q ++ + + P R+ + T I + A+ K L ++L + Sbjct: 180 FSATLPPAVQSLTLRYTRQPVRVSIAAEQLTTPHIRQIYYEILAR--DKLDALCRVLDA- 236 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+FC ++ V + L+ +G++ ++HG++ Q R +++ F+EG + ++VA+ Sbjct: 237 EMPQLAIVFCRTRQEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVLVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI +V HV N+DVP E+Y+HRIGRTGRAGR G A T + + + + IE+ Sbjct: 297 DVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGRAGVAITFITPRERRMLQTIER 356 Query: 363 LIEKKVD 369 + +++ Sbjct: 357 VTRTRIE 363 >gi|46143724|ref|ZP_00134573.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208057|ref|YP_001053282.1| cold-shock DEAD box protein A-like protein [Actinobacillus pleuropneumoniae L20] gi|190149888|ref|YP_001968413.1| cold-shock DEAD box protein A-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303252206|ref|ZP_07338374.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|126096849|gb|ABN73677.1| cold-shock DEAD box protein A-like protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915019|gb|ACE61271.1| cold-shock DEAD box protein A-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648989|gb|EFL79177.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 619 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 233/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL ++ AV D G+V P+PIQ +TIP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L++ PTRELA QVAD E++ KN + V + GG ++ Q + L Sbjct: 66 AQIDPTK---RHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G+ V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+Q+P+ +++ +A I + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + IIF K +++ E+ G+ A++G++ Q++R + L K G + ++ Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359 Query: 360 IEKLIEKKVD 369 IE L++K +D Sbjct: 360 IEHLMKKPID 369 >gi|329295922|ref|ZP_08253258.1| ATP-dependent RNA helicase DeaD [Plautia stali symbiont] Length = 617 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/379 (38%), Positives = 239/379 (63%), Gaps = 11/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ ++ GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ VR P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 VDPS---VRAPQILVLAPTRELAVQVAEAMTEFSKHMRGINVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++++ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSSLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRMQSSITTRPDISQSY---WTAYGRKSDALVRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 242 ED-FDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 359 AIEKLIEKKVDWLNGDLSS 377 KL +V+ N +L S Sbjct: 361 RTMKLTIPEVELPNAELLS 379 >gi|294142501|ref|YP_003558479.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12] gi|293328970|dbj|BAJ03701.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12] Length = 617 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 232/371 (62%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ ++ D GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L+ Sbjct: 8 FRELGLSEPLLRSLDDLGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLST 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + + P+ L+L PTRELA QVA+ F Y K+ L V + GG Q L R Sbjct: 68 ID---SSLNAPQILVLAPTRELAVQVAEAFASYAKHMKGLHVLPIYGGQSMHQQLNALRR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L +++++ +V+DEAD ML MGFI I+ I P RQ Sbjct: 125 GPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ +L P +++ ++T ETIE FV +Q++K AL++ L Sbjct: 185 LFSATMPEQIKRVANKYLTEPVHVKIAATTATVETIEQRFVQV-SQHNKLEALVRVL--E 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + IIF + + V L LE +G++ +HG+++Q++R + + K G++ +++A Sbjct: 242 VESTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGSLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRT RAGR G A V +++ + IE Sbjct: 302 TDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTDRAGRSGMAILFVTHREMRMLRTIE 361 Query: 362 KLIEKKVDWLN 372 + + ++ ++ Sbjct: 362 RATKSRISPMD 372 >gi|254457480|ref|ZP_05070908.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1] gi|207086272|gb|EDZ63556.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1] Length = 531 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 149/364 (40%), Positives = 225/364 (61%), Gaps = 7/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DLGLS ++ +V AG+V P+PIQ IPL+LQ D+ G A TGTGKTA+F LP L Sbjct: 18 LTFDDLGLSQDILRSVKQAGFVTPSPIQAAAIPLILQGRDIVGQAHTGTGKTAAFGLPAL 77 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R V + L++ PTRELA QV+D KYG+N N + GG + Q ++ Sbjct: 78 NNIDV-RNGVEI---LVITPTRELATQVSDELFKYGRNINAKTVTVYGGSSYNRQIDLID 133 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA V++ TPGR+LD +G + I+V+DEAD MLDMGF+ I I S +P RQT Sbjct: 134 RGASVVVATPGRLLDILKKGLVKNFTPSIVVLDEADEMLDMGFLDDINEIFSYLPTKRQT 193 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ ++E L NP+ I + +T IE + + S++ + +L+ Sbjct: 194 LLFSATMPKPIKLLAERILDNPEFISITKGETTNSDIEQLYYVI--EESERDDAIIRLMD 251 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+DT K+ ++FC K V L + L G+ +HG+++QR R ++ FK +++++V Sbjct: 252 SEDTKKS-VVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKSNSVKVLV 310 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+ + ++ HVFN+ +P E+Y+HRIGRTGRAG GKA TL+ + K + I Sbjct: 311 ATDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRI 370 Query: 361 EKLI 364 ++ + Sbjct: 371 KQKV 374 >gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16] gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16] Length = 493 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 225/370 (60%), Gaps = 11/370 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F GL VV AV + G+ + TPIQ +TI LVL DV G AQTGTGKT +F +P++ Sbjct: 3 NFEQFGLDASVVQAVTNIGFTEATPIQQETIELVLAGKDVIGQAQTGTGKTGAFGIPLVN 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ V+ L+L PTRELA QV ++G+ + ++ GG F Q + L++ Sbjct: 63 RIDSSNPLVQ---GLVLAPTRELANQVEQALRQFGRVKGVRTTVVYGGEDFGKQIRSLKQ 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 +++ TPGR+LDH R + + +IE +V+DEAD ML+MGFI I+ I + P TRQT Sbjct: 120 RPHIIVATPGRLLDHMRRKTIRLESIETVVLDEADEMLNMGFIEDIETILAETPQETRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238 LLFSATM ++ ++ F++NP RI V T E I F+ + ++ C L+ Sbjct: 180 LLFSATMPKRMESLASKFMKNPTRIAVKAKEVTMENIAQQFIEVHEREKFDVLCRLID-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ D I+F K+ V L +L K+G+ +HG+++Q R +L FKEG I + Sbjct: 238 LETPDL---SIVFGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDV 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HVFNFD+P E+Y+HRIGRTGRAGR G A TL K + +H+ Sbjct: 295 LVATDVAARGLDISGVTHVFNFDLPQDPESYVHRIGRTGRAGRSGIAITLATKPEREHVK 354 Query: 359 AIEKLIEKKV 368 IE + ++++ Sbjct: 355 LIESVSKRRM 364 >gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523] Length = 570 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 146/363 (40%), Positives = 229/363 (63%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGLS +V V++ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R+R + P+ L+L PTRELA QVA+ F+ + KN NL VA + GG + +Q + L+ Sbjct: 68 NIDL-RSRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S + Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHISEQCQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + E +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 IEET-DGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRNAKSDILV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN + Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231] Length = 650 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 225/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL ++ AV G+ P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP I Sbjct: 68 FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALP---I 124 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L + + R P+ LIL PTRELA QVAD+F+ + + ++ V + GG + Q L R Sbjct: 125 LSRINVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR 184 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++N+ LV+DEAD ML MGF I+ I P +Q Sbjct: 185 GAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVA 244 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S+ ++++P+ I+V + + T I F+ + K L ++L+ Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFL--NVAHRNKLDALTRILEV 302 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K + L +GFS AI+G+I Q R + + K+G + ++VA Sbjct: 303 TE-FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+D+PN E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421 Query: 362 K 362 + Sbjct: 422 R 422 >gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium pseudotuberculosis FRC41] gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium pseudotuberculosis FRC41] gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002] gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19] Length = 660 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 225/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL ++ AV G+ P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP I Sbjct: 68 FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALP---I 124 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L + + R P+ LIL PTRELA QVAD+F+ + + ++ V + GG + Q L R Sbjct: 125 LSRINVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRR 184 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++N+ LV+DEAD ML MGF I+ I P +Q Sbjct: 185 GAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVA 244 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S+ ++++P+ I+V + + T I F+ + K L ++L+ Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFL--NVAHRNKLDALTRILEV 302 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K + L +GFS AI+G+I Q R + + K+G + ++VA Sbjct: 303 TE-FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+D+PN E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421 Query: 362 K 362 + Sbjct: 422 R 422 >gi|330504959|ref|YP_004381828.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] gi|328919245|gb|AEB60076.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] Length = 447 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 153/374 (40%), Positives = 227/374 (60%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + D Y PTP+Q + IP VL+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRTLADLDYKTPTPVQSQAIPTVLKGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV +F+ YG++ LT + GG+ Q K Sbjct: 61 QRLTLEGPQVASNSVRALVLTPTRELAEQVLQSFQAYGQHLPLTSYAVYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + + ++ L++DEADRMLD+GF + + S +P R Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAVKFSQLQTLILDEADRMLDLGFARELDELFSALPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D +++++ L++P +EV+ ++ A+T++ + +K L L Sbjct: 181 QTLLFSATFSDAIRQMAGELLRDPLSVEVSPRNAAAKTVKQWLIPV--DKKRKSELFLHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ + ++F +K V L L G + +IHG+ Q SR++ L FK G +Q+ Sbjct: 239 LQVK-RWGQVLVFAKTRKGVDQLEQELLAMGVAADSIHGDKPQPSRLRALERFKAGEVQI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+Y+HRIGRTGRAG G+A +LV +++ + Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAISLVCADEVDQLA 357 Query: 359 AIEKLIE---KKVD 369 AIE L + K+VD Sbjct: 358 AIENLTQQLIKRVD 371 >gi|319642286|ref|ZP_07996945.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A] gi|317386142|gb|EFV67062.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A] Length = 422 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 162/414 (39%), Positives = 247/414 (59%), Gaps = 17/414 (4%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74 A+ GY PTPIQ + IP++L+ D+ G AQTGTGKTA+F +P++ L + + + + Sbjct: 3 ALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDHK-KGIK 61 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 LIL PTRELA Q+ +NF++Y + A++ GG+P +AQ L+RG VLI TPGR+L Sbjct: 62 ALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALKRGVQVLIATPGRLL 121 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 D ++G + + +E V+DEADRMLDMGFI I+ + L+P RQTL FSATM E++K+ Sbjct: 122 DLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMPSEIEKL 181 Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254 +++ L NP++IEV SST +TI + Y K+ L L +++ +IF Sbjct: 182 ADSMLTNPEKIEVTPVSSTVDTIRQ---SVYFVEKKEKKDLLLHLLKNPEIESVLIFTRT 238 Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 K L L K AIHGN Q +R + L+NFK+ T ++++A+D+AARG+D+ + Sbjct: 239 KHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDVNQL 298 Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV------ 368 HV N+++PN +E Y+HRIGRTGRAG G A + E++ ++ I+KLI ++ Sbjct: 299 SHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDIQKLIGLQIPVVKDH 358 Query: 369 DWLN--GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-FDRRKKNYSSQKSH 419 W+ G+ + E + A+ N + + KS G + RRKK S++ Sbjct: 359 PWVTVEGEKAQAGKTEELKEKAKANKVYRGS----KSNGDYWRRKKQAQSRQGQ 408 >gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. subtilis str. 168] gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis] gi|2632758|emb|CAB12265.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. subtilis str. 168] Length = 511 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 227/369 (61%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ A+ G+ + TPIQ +TIPL L DV G AQTGTGKTA+F +P++ Sbjct: 22 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + ++ +++ PTRELA QV++ K G++ V + GG Q + L++ Sbjct: 82 INPESPNIQ---AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 138 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++++ TPGR+LDH NR + +NN+ +V+DEAD ML+MGFI I++I S VP QTLL Sbjct: 139 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 198 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ P+ ++V T I+ ++ Q KK L +LL Q Sbjct: 199 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 256 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM L FKEG I+++VA+ Sbjct: 257 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 315 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAG+ G A T + + + AIE+ Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 375 Query: 363 LIEKKVDWL 371 ++K+D + Sbjct: 376 TTKRKMDRM 384 >gi|237746640|ref|ZP_04577120.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS] gi|229377991|gb|EEO28082.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS] Length = 461 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 149/394 (37%), Positives = 231/394 (58%), Gaps = 29/394 (7%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL P ++ A+ Y PTP+Q K IPL ++ D+ +QTG+GKTA+F+LP L Sbjct: 1 MTFETLGLHPSILKALAGIHYDIPTPVQTKAIPLAIEGKDLLVSSQTGSGKTAAFMLPAL 60 Query: 61 TIL------------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96 E+ R + P+ L+L PTRELA Q+ + E+Y Sbjct: 61 HRFATQKISETSQKTPNQQRQSAKAKGERARFKAAQPKMLVLTPTRELALQIVSSTEQYS 120 Query: 97 K--NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154 + TVA+L GG+P+ Q + L R ++L+ TPGR++DH GK+ + +EILV+DE Sbjct: 121 ACLKHFRTVAIL-GGMPYPKQMQLLARNPEILVATPGRLIDHMQSGKIRFDQLEILVLDE 179 Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214 ADRMLDMGFI I+ + + P TRQT+LFSAT+ + K++ + + + I + + +S Sbjct: 180 ADRMLDMGFIDDIETVIAATPATRQTMLFSATLDGIVGKMARSVTHDAESIHITSSASRH 239 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 E IE + K LL LQ + ++ ++F K++ + L GFS A Sbjct: 240 ENIEQ-MIHYVDDLPHKNRLLAHWLQDR-SLGQALVFTATKRDADLVADRLAIAGFSTAA 297 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + L+ ++G ++++VA+D+AARG+DIP + HVFN+D+P E+Y+HRIG Sbjct: 298 LHGDMPQNARNRTLAKLRDGKVKILVATDVAARGIDIPSITHVFNYDLPKFPEDYVHRIG 357 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 RTGRAGRHG A +LV+ D + IE+ ++ + Sbjct: 358 RTGRAGRHGLAISLVSHSDSASMKRIERFTKQTI 391 >gi|220933289|ref|YP_002512188.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994599|gb|ACL71201.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 602 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 150/373 (40%), Positives = 229/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL+P V+ A+ D GY PTPIQ + IP +L D+ G AQTGTGKTA+F LP L+ Sbjct: 11 FDALGLNPAVLKALTDTGYEAPTPIQAEGIPPLLAGRDLLGQAQTGTGKTAAFALPALSR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ R ++ L+L PTRELA QVA+ F+ Y ++ V + GG P+ Q K+L R Sbjct: 71 LDLKDNRTQV---LVLAPTRELAIQVAEAFQTYARHLPGFHVLPIYGGQPYGIQLKQLSR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L ++ + LV+DEAD ML MGFI ++ I P +RQ Sbjct: 128 GAQVVVGTPGRVMDHMRRGTLKLDALRTLVLDEADEMLRMGFIDDVEWILEQTPASRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++V+ L+ P + + + ++TA TI + + K L +LL++ Sbjct: 188 LFSATMPEVIRRVAHTHLKEPAEVRIRSATTTATTIRQRYWRVSGLH--KLDALTRLLET 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M +IF K V L L +G + A++G+I Q R +++ K+G + ++ Sbjct: 246 EPFDAM---LIFVRTKTETVELAERLTARGHACEALNGDIPQNQRERVVERLKKGQLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G+A VA + + + A Sbjct: 303 VATDVVARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRTGEAILFVAPREQRMLKA 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ ++ Sbjct: 363 IERATRQPIEPMH 375 >gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b] gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b] Length = 509 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 228/369 (61%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LS +V V G+ + TPIQ +TIP+ L DV G AQTGTGKTA+F +P + Sbjct: 4 FQDLQLSEALVKGVHKMGFEEATPIQAETIPVALTGVDVLGQAQTGTGKTAAFGIPTI-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E+ ++ R + L+L PTRELA QVA+ K G+ + + GG + Q + L++ Sbjct: 62 -ERIDSKARQVQALVLAPTRELAIQVAEELNKIGETKRVYALPVYGGQQIDRQIRGLKKN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH R + +++I+ +++DEAD ML+MGF+ I+ I + +P RQTLL Sbjct: 121 PQIVVATPGRLMDHMKRKTIKLDDIQTVILDEADEMLNMGFVEDIETILAGLPEERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLLQ 240 FSATM +++K++E F+++P I+V T E I F+ ++ C L+ Sbjct: 181 FSATMPPQIKKIAERFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRLI----- 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D+ + IIF KK V + +L K+G++ +HG++ Q R +++ FK GTI ++V Sbjct: 236 DIDSPELSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAG+ G A T + + + AI Sbjct: 296 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFGQVKAI 355 Query: 361 EKLIEKKVD 369 E++ KK++ Sbjct: 356 ERVTNKKMN 364 >gi|218768426|ref|YP_002342938.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491] gi|121052434|emb|CAM08770.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491] Length = 457 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 160/423 (37%), Positives = 251/423 (59%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L++ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV +T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQDTTNANVEQHIIAV--DTIQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G ++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|206564651|ref|YP_002235414.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia J2315] gi|198040691|emb|CAR56677.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia J2315] Length = 484 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 225/368 (61%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + Y PTP+Q K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIEPLLHNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F +YGK +L GG+ Q K Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L+NP I V+ P++TA I+ +V T + +K + Sbjct: 181 QTLLFSATFSDEIRTMAAGILRNPVDISVSAPNATASKIKQ-WVVTVDKRNKPGLFMH-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +Q+ ++ ++F + V L LEK G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 238 LVAQNKWEHALVFVKTRNGVDYLAVMLEKAGYAVDTIHGDKPQPARLRALERFKAGEVQM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 358 AIEALIRQ 365 >gi|116327340|ref|YP_797060.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332045|ref|YP_801763.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120084|gb|ABJ78127.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125734|gb|ABJ77005.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 549 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 164/447 (36%), Positives = 259/447 (57%), Gaps = 25/447 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L PK++ A+ + GY + TPIQ K+IP L+ D+ G+AQTGTGKT +F++P++ Sbjct: 1 MKFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDIIGLAQTGTGKTVAFLIPVV 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKK 118 TIL K +V L+L PTREL Q+AD +K K+ + A+ +IGG +++QNK Sbjct: 61 HTILTKNIQKVS---ALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQNKD 117 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE +++ TPGR++D G + ++N+E V+DEADRMLDMGFI I+ + + Sbjct: 118 LEGLNGIIVATPGRLIDMVKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRK 177 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT++ E+ +++ FL P I++N E I+ V + +K + L Sbjct: 178 QTLLFSATLSVEVMRLAYRFLNEPVEIQINPEKIITERIDQKIV--HLGREEKIPYMTNL 235 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + GIIF N K N+ + ++L K G + I +DQ+ R+++L +FK G + Sbjct: 236 IVNSKDEGQGIIFTNYKANIPKIVYTLRKYGIPITGISSELDQKKRLRLLRDFKSGKYRY 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+A+RG+D+ ++ V+N+D+P ENY+HRIGRT RAGR GKA ++ D ++ Sbjct: 296 MVATDVASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRMGKAIGFCSESDYVELE 355 Query: 359 AIEKLIEKKVDWLNGDLSSLN------PPL---EKIDIAQHNHARKNNPIPQ-------K 402 IEK +++K++ L + + PP + D + H ++N P Sbjct: 356 KIEKYLKQKIEILEVNEEYIQFPTGKFPPFIGGDSYDREKEVHFKQNGRRPHDRGDRAPH 415 Query: 403 STGFDRR--KKNYSSQKSHIPLKESEK 427 DRR K++ S SH P ++S K Sbjct: 416 KHDRDRRGDKRHTSHIHSHSPTRDSHK 442 >gi|51245542|ref|YP_065426.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54] gi|50876579|emb|CAG36419.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54] Length = 632 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 154/384 (40%), Positives = 233/384 (60%), Gaps = 12/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L +V ++ G+ +PTPIQ K IPL+L D+ G AQTGTGKTA+F LP+L Sbjct: 57 FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + V+ L+L PTRELA QV D Y + V ++ GG ++AQ L RG Sbjct: 117 IDFSKKCVQ---ALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRRG 173 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A V++ TPGR+LD +G L ++ ++ LV+DEAD ML MGFI I+ I S P RQT+L Sbjct: 174 ARVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTML 233 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT++ + ++ +L +P+ I ++ +IE + S K A + ++ + + Sbjct: 234 FSATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYY--LINNSDKIAAITRVFEVE 291 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 T+++ +IF + V L + L +GF+ + G++ Q +R ++LS FK+G I+++VA+ Sbjct: 292 -TVESALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVAT 350 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI D+ HVFN+D+P E Y+HRIGRTGRAGR G A +LV D IE+ Sbjct: 351 DVAARGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQ 410 Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386 KK+ + G+L P +E+I+ Sbjct: 411 YTGKKL--IKGEL----PTVEQIE 428 >gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273] gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273] Length = 590 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 231/372 (62%), Gaps = 7/372 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F DL LS ++ A+ + GY PTPIQ +TIPL+L+ DV G AQTGTGKTA+F LP+L+ Sbjct: 11 NFTDLNLSEPIMRALKEVGYETPTPIQARTIPLMLEGRDVLGQAQTGTGKTAAFALPILS 70 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + P+ L+L PTRELA QVA+ F KY + V + GG + Q + L+ Sbjct: 71 GID---LSLTDPQVLVLAPTRELAIQVAEAFHKYAEYLKGFHVLPIYGGQDYGGQLRMLK 127 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++DH RG L +++++ LV+DEAD ML MGFI ++ I P RQ Sbjct: 128 RGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILGETPKERQV 187 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++++ +L +P + + ++T ETI + S K +L ++L+ Sbjct: 188 ALFSATMPAPIRRIAQKYLNSPAEVTIEGKTTTVETIRQRYWIVGG--SHKLDILTRILE 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + +IF K + L L+ +G++ A++G++ Q R + + K+G++ +++ Sbjct: 246 VE-PFEGMLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQNQRERTVDQLKDGSLNIVI 304 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+DVP E+Y+HRIGRTGRAGR G+A VA + + AI Sbjct: 305 ATDVAARGLDVERISHVINYDVPYDTESYVHRIGRTGRAGRSGEAILFVAPREKNMLYAI 364 Query: 361 EKLIEKKVDWLN 372 EK K+++ + Sbjct: 365 EKATRKRIELME 376 >gi|261251316|ref|ZP_05943890.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891] gi|260938189|gb|EEX94177.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891] Length = 396 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 151/362 (41%), Positives = 217/362 (59%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + A+ + GY KPT IQ K IP++L D+ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSQPITTAISELGYDKPTNIQNKAIPVILDGEDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R LIL PTRELA QV ++YGK+ NLT + GG+ + Q + L Sbjct: 61 EKLSQGETQRKKRIRALILAPTRELAIQVEQKVQEYGKHLNLTSLAMYGGVDEQPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + +EILV+DEADRMLDMGFI I I +P Q Sbjct: 121 IEGVDILVATPGRLLDMYAKRAVYFEEVEILVLDEADRMLDMGFIEDINKILDRLPTDIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++ +++ + NP I + ++ + IE + K ALL L+ Sbjct: 181 NLLFSATLSNKVRDLAKTAVHNPYEISIAANQASKKNIEQWLITV--DKDMKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +IF K L LEK+G A H Q R K+L +FK G I+ M Sbjct: 239 K-ENEWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAIRSKLLEDFKAGKIKYM 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ + ARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|229523508|ref|ZP_04412913.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426] gi|229337089|gb|EEO02106.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426] Length = 396 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 155/372 (41%), Positives = 225/372 (60%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +G+ + R+ R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQRKKRI-RALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLI 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 120 DGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 180 LLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLIN 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q +IF K L LEK+G A H Q R ++L +FK G I+ +V Sbjct: 238 EQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ I Sbjct: 297 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 356 Query: 361 EK----LIEKKV 368 E LIE++V Sbjct: 357 ESRLGHLIERRV 368 >gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp. subtilis str. 168] gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp. subtilis str. SMY] gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5] gi|134039178|sp|P96614|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto BEST195] gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5] Length = 494 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 227/369 (61%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ A+ G+ + TPIQ +TIPL L DV G AQTGTGKTA+F +P++ Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + ++ +++ PTRELA QV++ K G++ V + GG Q + L++ Sbjct: 65 INPESPNIQ---AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++++ TPGR+LDH NR + +NN+ +V+DEAD ML+MGFI I++I S VP QTLL Sbjct: 122 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ P+ ++V T I+ ++ Q KK L +LL Q Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM L FKEG I+++VA+ Sbjct: 240 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAG+ G A T + + + AIE+ Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 358 Query: 363 LIEKKVDWL 371 ++K+D + Sbjct: 359 TTKRKMDRM 367 >gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis ATCC 49540] gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis ATCC 49540] Length = 501 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/363 (39%), Positives = 228/363 (62%), Gaps = 6/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ +GY + TPIQ +TIP+VL+ DV G AQTGTGKTA+F LP++ Sbjct: 1 MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ +I+ PTRELA Q + + GK+ ++ V ++ GG Q + L+ Sbjct: 61 EHVDTDNPNIQ---AIIISPTRELAIQTQEELFRLGKDKHVRVQVVYGGADIRRQIRNLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+ DH NR + +++I+ LV+DEAD ML+MGF+ I+ I P RQT Sbjct: 118 QHPQILVGTPGRLRDHLNRHTVKLDHIKTLVLDEADEMLNMGFLDDIEAIIDQTPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++K+ F+ +P + + T + ++ +V A+ +K ++ +L+ Sbjct: 178 LLFSATMPPEIKKIGVKFMTDPTMVRIKAKELTTDLVDQYYVK--ARDYEKFDIMTRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F K+ V L L +G++ IHG++ Q R KI+ FK G + ++V Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P+ ++Y+HRIGRTGRAG HG + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREI 354 Query: 361 EKL 363 EKL Sbjct: 355 EKL 357 >gi|307129391|ref|YP_003881407.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] gi|306526920|gb|ADM96850.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] Length = 631 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 236/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLS ++ A+ + GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + +A ++ P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 I---KADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+ +P+ + + + +T I + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALIRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +VD N +L Sbjct: 362 RTMKLTIPEVDLPNAEL 378 >gi|251791029|ref|YP_003005750.1| ATP-dependent RNA helicase DeaD [Dickeya zeae Ech1591] gi|247539650|gb|ACT08271.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591] Length = 624 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 236/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLS ++ A+ + GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + +A ++ P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 I---KADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+ +P+ + + + +T I + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALIRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +VD N +L Sbjct: 362 RTMKLTIPEVDLPNAEL 378 >gi|227327833|ref|ZP_03831857.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 635 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 237/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L + ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L Sbjct: 68 L---KPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRG 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + +P QT Sbjct: 125 GAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAQHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+++P+ + + + +T I + Q +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTV--QGMRKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++++ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC 23834] gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC 23834] Length = 431 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 226/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL ++ A+ AGY++PTPIQ++ +P + D+ AQTG+GKTA+F+LP L Sbjct: 3 IQFSDLLHDKNLLAALRSAGYIEPTPIQVQALPAAIDGRDIMASAQTGSGKTAAFLLPSL 62 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 I + + PR L+L PTRELAAQV N + Y +N L L+GG F Q K Sbjct: 63 QRITRRSDKSGKGPRILVLTPTRELAAQVEKNAKIYAQNMKWLRTVTLVGGSSFGFQIKA 122 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L + D+++ TPGR++DH G++ + +E+LV+DEADRMLDMGFI I+ I + P +R Sbjct: 123 LAKPIDLVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPESR 182 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT + K++ +NP+ IE+ + + E F + + LL + Sbjct: 183 QTLLFSATWDGAVGKLARRLTKNPEVIEIEREDNQGKIDEQLFYCDDKNHKNR--LLDHI 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + + IIF + K L L ++GF+ +HG++ Q R + L + ++G I++ Sbjct: 241 LRDAN-IDQCIIFTSTKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMDLRKGRIKV 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGRHG A T + + Sbjct: 300 LVATDVAARGIDVPSITHVINYDLPKQAEDYVHRIGRTGRAGRHGLALTFAEVNEYVAVH 359 Query: 359 AIEKLIEKKV 368 IEK + +K+ Sbjct: 360 KIEKYLGRKL 369 >gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555] gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016] gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555] gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 524 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 227/371 (61%), Gaps = 11/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL L PKV A+ + G+ +P+ IQ ++IP++L+ +D+ G AQTGTGKT +F PML Sbjct: 4 ISFNDLNLHPKVFEAIDNMGFEEPSQIQAESIPVILEGNDIIGQAQTGTGKTLAFGAPML 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + K + + LIL PTRELA QV D + K + + + GG P E Q K L+ Sbjct: 64 S---KITPKNKHISALILTPTRELAIQVNDELSRIAKFMKILLLPIYGGQPIERQIKSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG ++++ TPGRILDH +R L ++NIE L IDEAD MLDMGFI I+ I RQT Sbjct: 121 RGINIVVGTPGRILDHLHRKTLDLSNIEFLTIDEADEMLDMGFIEDIEEIIKASNPNRQT 180 Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237 LLFSATM D++++++ ++ N K I + + T E + + + ++ C +L Sbjct: 181 LLFSATMPDQVKRLASKYMSSNTKYITIAKNTLTVEKTKQYYYEIKHKDRFESLCRIL-- 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 D + IIFC K+ V L S++ +G++V +HG++ Q R+ L FKEG++ Sbjct: 239 ---DVDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLD 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARG+D+ +V HV N+D+P E+Y+HRIGRTGRA + G A++LV + + Sbjct: 296 FLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILL 355 Query: 358 DAIEKLIEKKV 368 IEK + K+ Sbjct: 356 KQIEKFTKSKI 366 >gi|92113266|ref|YP_573194.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens DSM 3043] gi|91796356|gb|ABE58495.1| ATP-dependent RNA helicase CsdA [Chromohalobacter salexigens DSM 3043] Length = 568 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 149/367 (40%), Positives = 221/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L ++ + GY P+ IQ KTIP +L+ DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLSR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ R R P+ L+L PTRELA QVA +F +YG+ L V L GG + Q L R Sbjct: 71 LDLQR---REPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +RG L ++ + LV+DEAD ML MGFI ++ + S P Q + Sbjct: 128 GAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRV 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSAT+ DE+ ++ ++L +P RI + T + TAE IE V + K L +LL+ Sbjct: 188 FFSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLV--RIEGGAKLEALSRLLEV 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F + L L +G + A+ G++DQ R + + K G + +++A Sbjct: 246 E-PVDAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIA 304 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+P + HVFN+D+P AE Y HRIGRTGRAGR G A T + + + +E Sbjct: 305 TDVAARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDME 364 Query: 362 KLIEKKV 368 ++ +++ Sbjct: 365 RVTGQQM 371 >gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gi|300075506|gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 510 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 150/393 (38%), Positives = 232/393 (59%), Gaps = 27/393 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ +AGY PTP+Q K IP + D+ +QTG+GKTA+F+LP L Sbjct: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 Query: 61 TIL------------------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96 L E+ R + P+ L+L PTRELA QV +KYG Sbjct: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 Query: 97 KNYN-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155 + V ++GG+P+ Q + L R ++L+ TPGR++DH GK+ + ++ILV+DEA Sbjct: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215 DRMLDMGFI I+ I + P TRQT+LFSAT+ + +++ NP I++ + S+ E Sbjct: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275 I V S K LL LL+ ++ +IF K++ + L GF+ A+ Sbjct: 241 NIMQR-VHFVDDLSHKNRLLDHLLRDT-SIDQAVIFTATKRDADTIADRLNIAGFAAAAL 298 Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335 HG++ Q +R + L++ + G ++++VA+D+AARG+D+P + HVFN+D+P AE+Y+HRIGR Sbjct: 299 HGDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGR 358 Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 TGRAGR+G A +LV + + IE+ ++ + Sbjct: 359 TGRAGRNGVAISLVNHAEGMQVKRIERFTKQTI 391 >gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591] gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus suis ST3] gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591] gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3] Length = 526 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 229/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS ++ AV AG+ P+PIQ +TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ LI+ PTRELA Q + K+G+ + V + GG E Q K L Sbjct: 61 NKIDTNNQAIQ---ALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++ +E L++DEAD ML+MGF+ I+ I VP +RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++++ F++ P+ +++ T ++ ++ + +K + +L+ Sbjct: 178 LLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYYL--RVKEHEKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V L L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAII 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 EDLTKKRMKGL 365 >gi|327396268|dbj|BAK13690.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355] Length = 630 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 239/377 (63%), Gaps = 11/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGL+ +++ ++ GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ ++ K+ L V L GG ++ Q + L + Sbjct: 68 IDP---TVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSY---WTAYGRKTDALVRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 361 RTMKLTIPEVELPNAEL 377 >gi|323495782|ref|ZP_08100852.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326] gi|323319249|gb|EGA72190.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326] Length = 399 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 154/372 (41%), Positives = 222/372 (59%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + A+ GY KPT IQ K IP ++ D+ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSKPITDAIQSLGYAKPTTIQNKAIPAIMHGEDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG R + R LIL PTRELA Q+ ++YG+N +LT + GG+ + Q + L Sbjct: 61 EKLAKGETQRKKRIRALILAPTRELAEQIDQKVKQYGQNLSLTSLAMYGGVDEKPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR+LD + + + +EILV+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDILIATPGRLLDLYGKRAVYFEEVEILVMDEADRMLDMGFIDDINKILDRLPTDIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++ +++ + +P I + ++ + IE + KK ALL L+ Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPFEISIAANQASKKNIEQWLITV--DKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D +IF K L LEK+G + A H Q R ++L++FK G IQ M Sbjct: 239 KEND-WDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAIRKQLLADFKAGKIQYM 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ + ARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKK 367 IE LIE++ Sbjct: 358 IESRLGHLIERR 369 >gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP-6] gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP-6] Length = 427 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 225/371 (60%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + ++ A+ GY PTPIQ+ IP +L+ D+ GIAQTGTGKTA+FVLP+L Sbjct: 1 MSFGNLNIIDPLLRAIALEGYTTPTPIQMLAIPPLLEGKDLLGIAQTGTGKTAAFVLPIL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + E+ +R PR L+L PTRELAAQ+ +F YGK ++ GG+ Q Sbjct: 61 QRMSAERRASRPGSPRVLVLAPTRELAAQIGQSFATYGKFLRFRQLVIFGGVRQGPQVNM 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD N+G + + +E V+DE DRMLDMGFI ++ I S +P Sbjct: 121 LSRGVDILVATPGRLLDLMNQGYIELKGVEFFVLDEIDRMLDMGFIRDVKRIVSALPEKH 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +L FSAT+T E +++++ L +P ++ + + T ++I+ + + K +LL L Sbjct: 181 SSLFFSATLTRETGELAQSLLNDPVHVQASPSACTLDSIDQQVF--FVDQNSKNSLLLDL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +D MK ++F K + L K AIHGN Q R K + F+ G I++ Sbjct: 239 LLKED-MKRVLVFARTKHRADKVAQMLSKNRIQSDAIHGNKSQNQRTKTMERFRSGRIRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI D+ HV N+D+PN E+Y+HRIGRTGRAG G AF+ + E+ + Sbjct: 298 LVATDIAARGIDIDDITHVVNYDLPNEPESYVHRIGRTGRAGASGNAFSFCSAEERSFLK 357 Query: 359 AIEKLIEKKVD 369 IE+L +K++ Sbjct: 358 DIERLTREKIE 368 >gi|291616016|ref|YP_003518758.1| DeaD [Pantoea ananatis LMG 20103] gi|291151046|gb|ADD75630.1| DeaD [Pantoea ananatis LMG 20103] Length = 633 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 239/377 (63%), Gaps = 11/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGL+ +++ ++ GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 11 FAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ ++ K+ L V L GG ++ Q + L + Sbjct: 71 IDPT---VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQ 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 128 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 188 LFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSY---WTAYGRKTDALVRFLEA 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 245 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 304 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 363 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 364 RTMKLTIPEVELPNAEL 380 >gi|269137769|ref|YP_003294469.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202] gi|267983429|gb|ACY83258.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202] Length = 634 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/379 (38%), Positives = 233/379 (61%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GY KP+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 68 IDPS---LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L + ++ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+ P+ + + + +T I + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDLSS 377 KL +V+ N +L S Sbjct: 362 RTMKLTIPEVELPNAELLS 380 >gi|254495452|ref|ZP_05108376.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] gi|85819807|gb|EAQ40964.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] Length = 411 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 157/389 (40%), Positives = 240/389 (61%), Gaps = 16/389 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+D+ L+ + A+ +A + KPT +Q KTIPLVL + +V AQTGTGKTA+F LP++ Sbjct: 1 MQFSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVLDKKNVIVAAQTGTGKTAAFALPII 60 Query: 61 TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L EKG +++ L++ PTRELA Q+ +NF+ Y K NL + GG+ E Sbjct: 61 NLLFDKQDAEKGEKKIK---ALVITPTRELAIQILENFKSYSKYSNLRSTAVFGGVSLEP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L +G D+L+ TPGR++D +G + ++ +EI V+DEAD MLDMGFI I+ I L Sbjct: 118 QKEILAKGVDILVATPGRLIDLQMQGNIDLSQLEIFVLDEADLMLDMGFINDIKKIEKLC 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P +QTLLFSAT+ +++ ++S++ ++N ++++N +TA+ I Y K L Sbjct: 178 PRKKQTLLFSATIPEKIDELSKSIVKNATKVDINPEETTAKNIGQLLY--YLPKKNKTDL 235 Query: 235 LQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL++ NG IIF K V L +L K G++V +IHG+ Q R K + +FK Sbjct: 236 CLHLLRN---TINGKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFK 292 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 +++A+D+AARG+DI +V + NFD+PN E Y+HRIGRTGRAG+ G AF+ + + Sbjct: 293 SKKASILIATDVAARGIDITNVDAIINFDIPNVPEIYVHRIGRTGRAGKSGIAFSFCSPD 352 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 + +I +IE LIEK + + +N P Sbjct: 353 ENNYIASIENLIEKSIKVIEDHPYPINKP 381 >gi|227822942|ref|YP_002826914.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234] gi|227341943|gb|ACP26161.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234] Length = 520 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 154/377 (40%), Positives = 230/377 (61%), Gaps = 4/377 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGLS +++ + G+ KPTPIQ + IPLVL+ HD+ G+AQTGTGKTA+F LPM+ Sbjct: 14 FKELGLSQQILATLSANGFEKPTPIQAQAIPLVLKGHDLIGLAQTGTGKTAAFGLPMIEK 73 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + R R R L+L PTREL Q+A N + + K L V +++GG+ Q ++L Sbjct: 74 LVADGKRPDPRNIRALVLAPTRELVNQIATNLKLFVKKSPLKVGVVVGGVSINKQTEQLA 133 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD R + + LV+DEAD+MLD+GFI ++ I+ LVP RQT Sbjct: 134 RGVDILVATPGRLLDLVARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKNRQT 193 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ +++ +L +P ++EV P A+ +E + K L Q L Sbjct: 194 LLFSATMPKQIAELAGEYLTDPVKVEVTPPGKAADKVEQYVHFVPGKDLKTTILKQSLTN 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + ++F K L L+ GF +IHGN Q R + L F++G I+++V Sbjct: 254 NPDGLS--LVFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKGFRDGEIRVLV 311 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIP V HV+N+D+P + Y+HRIGRT R GR G A A ++I+ + I Sbjct: 312 ATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 371 Query: 361 EKLIEKKVDWLNGDLSS 377 EKL+ ++ +G+ S Sbjct: 372 EKLMGIQIAVASGEAPS 388 >gi|330448509|ref|ZP_08312157.1| DEAD-box-containing ATP-dependent RNA helicase family member [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492700|dbj|GAA06654.1| DEAD-box-containing ATP-dependent RNA helicase family member [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 432 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 160/412 (38%), Positives = 243/412 (58%), Gaps = 13/412 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G S +V A+ + GY K TP+Q K IP + D+ +AQTGTGKTA+F LP++ Sbjct: 1 MSFLSQGFSQDLVKALTEIGYEKLTPVQAKAIPQARRGADILALAQTGTGKTAAFSLPII 60 Query: 61 TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K ++R + R LIL PTRELA Q+A+N Y K ++T + GG +Q K Sbjct: 61 QKLIDTPKSKSRFNV-RALILAPTRELAEQIANNISDYTKYTSITCTAVFGGKKMSSQEK 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +LE+G D+L+ TPGR+++H + + N+E L+ DEADRMLDMGFI I+ I + Sbjct: 120 RLEQGVDILVATPGRLIEHMELNNVSLANLEFLIFDEADRMLDMGFIGAIRVILDDIRTK 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT+LFSAT + ++ ++ + L P+RI V +STA+T+ H V +K LL + Sbjct: 180 PQTMLFSATSSAQMNALAADILHKPQRITVTPENSTADTVSH--VVYPVDEDRKTELLSE 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ ++ + ++F N K+ L L+ G HG+ Q +R + L FKEG + Sbjct: 238 LIGKKN-WRQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKAR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +MVA+++AARGLDI ++ +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 297 VMVATEVAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTL 356 Query: 358 DAIEKLIEK---KVDWLNGDLSSLNPPLEKIDIA---QHNHARKNNPIPQKS 403 IE+LI + +V + + S + LE++ RKNNP +S Sbjct: 357 VQIERLIGQRIHRVQLIGYEPKSRDALLERMHSKPAFSQREGRKNNPTQDQS 408 >gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca ATCC 27029] Length = 585 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 217/367 (59%), Gaps = 3/367 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL +++ A+ GY +PTPIQ + IP +L D+ G A TGTGKTA+F LP+L Sbjct: 22 FADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQR 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + GRA P +L+L PTRELA QV++ F +YGK+ V + GG P Q + L+ G Sbjct: 82 MPVGRADGD-PVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHG 140 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH RG L + + +V+DEAD MLDMGF I+ I P RQT+L Sbjct: 141 VDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVL 200 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSATM + ++ L +P RI + A + Y + K A L ++L Sbjct: 201 FSATMPARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDV 260 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+FC ++ V L ++ +G+ A+HG + Q R +++ + GT L+VA Sbjct: 261 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 319 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+DVP+ E+Y+HRIGR GRAGR G A TL + + + IE Sbjct: 320 TDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIE 379 Query: 362 KLIEKKV 368 ++ +++ Sbjct: 380 RVTGQRI 386 >gi|304557826|gb|ADM40490.1| Cold-shock DEAD-box protein A [Edwardsiella tarda FL6-60] Length = 621 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/379 (38%), Positives = 233/379 (61%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GY KP+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 68 IDPS---LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L + ++ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+ P+ + + + +T I + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDLSS 377 KL +V+ N +L S Sbjct: 362 RTMKLTIPEVELPNAELLS 380 >gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] Length = 570 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 154/378 (40%), Positives = 224/378 (59%), Gaps = 16/378 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL P+++ A+ + GY +PTPIQ IP +L DV G A TGTGKTA+F LP+L Sbjct: 18 FSELGLRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHR 77 Query: 63 LEKG-------RA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + G RA R P ++L PTRELAAQV + +YG+ + V + GG Sbjct: 78 IRDGERGERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSR 137 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LE G DV++ TPGR LDH +RG L ++ + ++V+DEAD MLDMGF I I Sbjct: 138 QLRALEEGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTILERT 197 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS----TAETIEHCFVATYAQYSK 230 P RQT+LFSATM + + +L++P+RIE++ S A + +V Sbjct: 198 PDDRQTMLFSATMPPRIAGLVRRYLRDPRRIELSRAESLDGDAASITQTAYVVPRGH--- 254 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K A L ++L + T + ++FC ++ V L ++ +G+ A+HG +DQ R +++ Sbjct: 255 KPAALGRVLDIE-TPEATVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQRNRVVGR 313 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 + GT L+VA+D+AARGLDI + HV N+DVP+ E Y+HRIGR GRAGR G A TL Sbjct: 314 LRTGTADLVVATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGSAITLAE 373 Query: 351 KEDIKHIDAIEKLIEKKV 368 + + I AIE++ + V Sbjct: 374 PGEHRMIKAIERVTGQPV 391 >gi|256844404|ref|ZP_05549890.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus 125-2-CHN] gi|256613482|gb|EEU18685.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus 125-2-CHN] Length = 494 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 154/396 (38%), Positives = 244/396 (61%), Gaps = 16/396 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++K ++ +I+EPTRELA Q + + G++ + V ++ GG Q + L+ Sbjct: 61 QMIDKKEKAIQ---AVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +L+ TPGR+LDH R + ++ ++ +V+DEAD MLDMGFI I++I +Q Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + ++ E F+ +P+ + + TA+ IE FV A+ S+K ++ +L+ Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFV--RAKESEKFDIMCRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + ++ Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE+L +KK +S L PP + D A H ++ Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381 >gi|229529522|ref|ZP_04418912.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)] gi|229333296|gb|EEN98782.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)] gi|327484073|gb|AEA78480.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3894-4] Length = 397 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 156/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D F + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLFGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii] gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii] gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii] Length = 431 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 154/381 (40%), Positives = 227/381 (59%), Gaps = 14/381 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+SP ++ + AG+ +PT IQ + IP L DV G AQTGTGKTA+FV+PML Sbjct: 9 FDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAAFVIPMLER 68 Query: 63 LE---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L KG+ PR LIL PTRELA Q+ + G++ L ++GG +AQ + L Sbjct: 69 LSGTPKGQ-----PRALILAPTRELAIQIQATIDTLGRDLQLFATTVVGGADMQAQVRGL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR+LDH G + + + ILV+DEADRMLDMGF I I +P RQ Sbjct: 124 RQRPDIIVATPGRLLDHMWNGTISLLAMSILVLDEADRMLDMGFAQQINQILDAMPEERQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++L ++++ +++P R+ V ++TA+ + + + +K LL LL Sbjct: 184 TLLFSATMPNDLARLAQASVKDPVRVMVTKSATTADGVTQAV--HHTTHDRKNGLLMSLL 241 Query: 240 QSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 QS+ DT+ ++F K L + L+ G V +HG R L F+ GT ++ Sbjct: 242 QSESDTV---LVFARTKHRADRLGNLLDSAGHRVAVLHGGRTLPQRRAALEGFRRGTYRV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ ++ HV N+DVPN E+Y+HRIGRT R G+A T V ED + + Sbjct: 299 LVATDIAARGIDVANIAHVINYDVPNCPEDYVHRIGRTARMRTTGRATTFVTSEDQEQLR 358 Query: 359 AIEKLIEKKVDWLNGDLSSLN 379 AIE+L+ + V G S++ Sbjct: 359 AIERLLGQAVPRAEGSPVSMS 379 >gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 640 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLSGAVMKAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 71 ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 246 EPFDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ V HV N+D+P E+Y+HRIGRTGRAGR+G A V + + + Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|225420023|ref|ZP_03762326.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme DSM 15981] gi|225041279|gb|EEG51525.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme DSM 15981] Length = 552 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL + P+++ A+ + Y PTPIQ + IP+VL D+ G AQTGTGKTA+F +P L Sbjct: 1 MQFKDLNIMPEILRALKNENYKIPTPIQEEAIPVVLSGRDLLGCAQTGTGKTAAFAIPTL 60 Query: 61 TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L E R R + L++ PTRELA Q+ D+F YG+ +L ++ GG+ + Q + Sbjct: 61 QMLSGEETPRWEKRTIKALVVTPTRELAIQIYDSFNTYGQFTDLKSCVVYGGVSQKPQEE 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+RG D+L+ TPGR+LD ++ + + I+ILV+DEADRMLDMGFI ++ I + P Sbjct: 121 NLKRGVDILVATPGRLLDLMDQKIVNIEKIKILVLDEADRMLDMGFIHDVKKIIARTPAE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTL FSATM ++ K++ L+NP++IE+ ++T E IE + K LL Sbjct: 181 KQTLFFSATMPPDIAKLAAKILKNPEKIEITPAATTVEAIEQYLY--FVDKGNKKDLLLH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+++D + + ++F K + L K AIHG+ Q +R + L++FK+ ++ Sbjct: 239 ILKTKD-LDSTLVFTRTKHGADRVVRQLSKSNVVAQAIHGDKSQGARQRALNDFKDKKLR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A + ++ + Sbjct: 298 VLVATDIAARGIDIDELACVVNYDLPDVPETYVHRIGRTGRAGLEGIAISFCDFDEKAQL 357 Query: 358 DAIEKLIEKKV 368 IEKLI KK+ Sbjct: 358 ADIEKLIGKKL 368 >gi|146313234|ref|YP_001178308.1| ATP-dependent RNA helicase DeaD [Enterobacter sp. 638] gi|145320110|gb|ABP62257.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. 638] Length = 655 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 236/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 ID---PELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ ++ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+++P+ + + + +T I F + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQTFWSVHGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQSLREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 I KL + D N +L Sbjct: 362 RIMKLTIPEADLPNAEL 378 >gi|15602977|ref|NP_246049.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70] gi|12721456|gb|AAK03196.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70] Length = 610 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 152/372 (40%), Positives = 234/372 (62%), Gaps = 13/372 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL ++ AV D G+ P+PIQ IP +L HDV G+AQTG+GKTA+F LP+L Sbjct: 6 MTFNDLGLPEFLLNAVSDLGFETPSPIQQSCIPNLLNGHDVLGMAQTGSGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 ++ + + P+ L++ PTRELA QVAD +F KY KN N+ L GG ++ Q + Sbjct: 66 AQIDLDK---KYPQMLVMAPTRELAIQVADACEHFCKYAKNTNIVT--LYGGQRYDIQLR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +GA V++ TPGRILDH RG L ++N+ +V+DEAD ML MGFI ++ + + +P Sbjct: 121 ALRQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEQ 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QT LFSATM D ++++++ F+++PK I++ + +T I + C+ Y +K L Sbjct: 181 HQTALFSATMPDPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCW---YVHGFRKNDALL 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L+ + IIF K +++ LEK GF A++G++ Q+ R + L + G++ Sbjct: 238 RFLEVE-KFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + Sbjct: 297 DILVATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRL 356 Query: 357 IDAIEKLIEKKV 368 + IE+L +K + Sbjct: 357 LRNIEQLTKKPI 368 >gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM 265] Length = 598 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 232/373 (62%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+ V+ A+ D GY PTPIQ +TIPL+++ DV G AQTGTGKTA+F LP+L+ Sbjct: 12 FTDLNLAEPVLRALADVGYETPTPIQARTIPLLIEGRDVLGQAQTGTGKTAAFALPILSN 71 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ P+ L+L PTRELA QVA+ F KY ++ V + GG + +Q + L+R Sbjct: 72 IDFSATE---PQVLVLAPTRELAIQVAEAFHKYAEHLKGFHVLPIYGGQEYGSQLRMLKR 128 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +G L +++++ LV+DEAD ML MGFI ++ I P RQ Sbjct: 129 GVHVVVGTPGRVMDHMRKGSLNLHSLKCLVLDEADEMLRMGFIDDVEWILEQTPSDRQVA 188 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L +P + + ++T +TI + S K +L ++L+ Sbjct: 189 LFSATMPAPIRRIAQKYLNDPAEVTIQAKTTTVDTIRQRYWIVGG--SHKIDILTRILEV 246 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K + + L+ +G+S A++G++ Q+ R + + K G + ++ Sbjct: 247 EPFDGM---IIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGALNIV 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G+A V+ + + + Sbjct: 304 IATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPRERNMLSS 363 Query: 360 IEKLIEKKVDWLN 372 IE+ KK++ + Sbjct: 364 IERATRKKIELME 376 >gi|28897677|ref|NP_797282.1| RhlE protein [Vibrio parahaemolyticus RIMD 2210633] gi|260364553|ref|ZP_05777162.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|260876480|ref|ZP_05888835.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|260895848|ref|ZP_05904344.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|28805890|dbj|BAC59166.1| RhlE [Vibrio parahaemolyticus RIMD 2210633] gi|308086771|gb|EFO36466.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308092804|gb|EFO42499.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|308115381|gb|EFO52921.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|328473340|gb|EGF44188.1| RhlE protein [Vibrio parahaemolyticus 10329] Length = 411 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 152/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV GY KPT IQ K IP+VL+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSAPITDAVTALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R +IL PTRELA QV + E YGKN L + GG+ + Q + L Sbjct: 61 EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR++D + + + + +E+LV+DEAD+MLDMGFI I I +P Q Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT+++ ++ +++N + +P+ I + S++ I+ T K +LL +L Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D +IF K L LEK+G A H +QR R +++ FK G IQ + Sbjct: 239 NEND-WSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|238918430|ref|YP_002931944.1| ATP-dependent RNA helicase DeaD [Edwardsiella ictaluri 93-146] gi|238867999|gb|ACR67710.1| cold-shock deAd box protein a [Edwardsiella ictaluri 93-146] Length = 634 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 145/379 (38%), Positives = 233/379 (61%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GY KP+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 68 IDPS---LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L + ++ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+ P+ + + + +T I + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDLSS 377 KL +V+ N +L S Sbjct: 362 RTMKLTIPEVELPNAELLS 380 >gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase domain-containing protein [Clostridium cellulovorans 743B] gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium cellulovorans 743B] gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans 743B] Length = 536 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 229/369 (62%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L +++ A+ D G+ +P+PIQ ++IP+ ++ +D+ G AQTGTGKTA+F +L Sbjct: 7 FNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGSIILNN 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + R R+P+ LIL PTRELA QV + + KN L + + GG P + Q + L G Sbjct: 67 MSEKR---RVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQLRALRNG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR+LDH R L ++ LV+DEAD ML+MGFI I+ + + RQTLL Sbjct: 124 VDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQTLL 183 Query: 183 FSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM D ++++S+ +++ + K I + + TA TI + + ++ C ++ Sbjct: 184 FSATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRII---- 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + IIFC KK V L S++++G+ V +HG+++Q RM L FKE + + Sbjct: 240 -DADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V HV N+D+P AE+Y+HRIGRTGRA + GKA+TLV + + Sbjct: 299 VATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQ 358 Query: 360 IEKLIEKKV 368 IEK + K+ Sbjct: 359 IEKTTKSKI 367 >gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus 1_2_62CV] gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus 1_2_62CV] Length = 565 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS +++ + AG+V+ +PIQ +TIPL + DV G AQTGTGKTA+F P L Sbjct: 50 FNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL-- 107 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK + + L++ PTRELA Q + ++G++ + V + GG E Q K L G Sbjct: 108 -EKINTENPIVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSG 166 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A +++ TPGR+LD R L +N++E L++DEAD ML+MGF+ I+ I S VP RQTLL Sbjct: 167 AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLL 226 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++++ F++ P +++ T E ++ ++ + ++K + +L+ + Sbjct: 227 FSATMPDAIKRIGMKFMKEPTHVKIAAKELTTELVDQYYIRV--KENEKFDTMTRLMDVE 284 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L L+ +GF IHG++DQ R+++L +FK G + ++VA+ Sbjct: 285 QP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVAT 343 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T VA ++ ++ IE Sbjct: 344 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIEN 403 Query: 363 LIEKKVDWL 371 L +K++ + Sbjct: 404 LTKKRMKGM 412 >gi|153837953|ref|ZP_01990620.1| RhlE [Vibrio parahaemolyticus AQ3810] gi|260902800|ref|ZP_05911195.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|149748644|gb|EDM59503.1| RhlE [Vibrio parahaemolyticus AQ3810] gi|308108629|gb|EFO46169.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] Length = 411 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 152/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV GY KPT IQ K IP+VL+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSAPITDAVTALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R +IL PTRELA QV + E YGKN L + GG+ + Q + L Sbjct: 61 EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR++D + + + + +E+LV+DEAD+MLDMGFI I I +P Q Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT+++ ++ +++N + +P+ I + S++ I+ T K +LL +L Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D +IF K L LEK+G A H +QR R +++ FK G IQ + Sbjct: 239 NEND-WSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 642 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 227/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 71 ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 246 EPFDGM---IIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ V HV N+D+P E+Y+HRIGRTGRAGR+G A V + + A Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRA 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|3288677|dbj|BAA31233.1| rhlE [Vibrio alginolyticus] Length = 411 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 152/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV GY KPT IQ K IP+VL+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R +IL PTRELA QV + E YGKN L + GG+ + Q + L Sbjct: 61 EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR++D + + + + +E+LV+DEAD+MLDMGFI I I +P Q Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT+++ ++ +++N + +P+ I + S++ I+ T K +LL +L Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D +IF K L LEK+G A H +QR R +++ FK G IQ + Sbjct: 239 NEND-WSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC 13032] gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum ATCC 13032] Length = 732 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 149/361 (41%), Positives = 222/361 (61%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL +V+ AV GY P+PIQ +TIP++++ DV G+AQTGTGKTA+F LP+L Sbjct: 104 FDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILAR 163 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++K VR P+ L+L PTRE A QVAD+F+ + + L V + GG + Q L R Sbjct: 164 IDKS---VRSPQALVLAPTREQALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +G L ++ + LV+DEAD ML+MGF ++ I P +Q Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S+ +L NP I V + + T I F+ A +K AL + L + Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFL-NVAHRNKMDALTRILEVT 339 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K + L +GFS AI+G+I Q R + + K+G + ++VA Sbjct: 340 E--FEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV NFD+PN E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457 Query: 362 K 362 + Sbjct: 458 R 458 >gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus JV-V01] gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus MV-1A-US] gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1] gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus JV-V01] gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus MV-1A-US] gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1] Length = 495 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 154/396 (38%), Positives = 244/396 (61%), Gaps = 16/396 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++K ++ +I+EPTRELA Q + + G++ + V ++ GG Q + L+ Sbjct: 61 QMIDKKEKAIQ---AVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +L+ TPGR+LDH R + ++ ++ +V+DEAD MLDMGFI I++I +Q Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + ++ E F+ +P+ + + TA+ IE FV A+ S+K ++ +L+ Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVR--AKESEKFDIMCRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + ++ Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE+L +KK +S L PP + D A H ++ Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381 >gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv. campestris str. B100] gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv. campestris] Length = 642 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 227/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 71 ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 246 EPFDGM---IIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ V HV N+D+P E+Y+HRIGRTGRAGR+G A V + + A Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRA 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 486 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 145/349 (41%), Positives = 219/349 (62%), Gaps = 6/349 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ KTIPL LQ HD+ G AQTGTGKTA+F +P++ ++ ++ L++ Sbjct: 2 GFEEATPIQAKTIPLALQGHDLIGQAQTGTGKTAAFGVPLINKIDTAADKIV---ALVMC 58 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QVA+ K G+ + + GG Q + L++ ++I TPGR+LDH NR Sbjct: 59 PTRELAIQVAEEISKLGRFKGIRSLPIYGGQDIVKQIRALKKKPQIIIGTPGRLLDHINR 118 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 + + +E +V+DEAD MLDMGF+ IQ+I S VP R T+LFSATM +QK++ FL Sbjct: 119 KTIKLEGVETVVLDEADEMLDMGFMDDIQSILSQVPEERHTMLFSATMPPNIQKLAHQFL 178 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 +NP+ + V +A I ++ + + +K L +LL + + IIF K+ V Sbjct: 179 RNPQHVSVIPKQVSAPLIAQAYIEVHEK--QKFEALSRLL-DMEAPELAIIFGRTKRRVD 235 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 L +L+K+G++ +HG++ Q R ++ F++G+I ++VA+D+AARGLD+ V HV N Sbjct: 236 ELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVIN 295 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 FD+P E+Y+HRIGRTGRAG+ G A+T V +I H+ IEK+ K+ Sbjct: 296 FDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIEKVTRHKI 344 >gi|328952772|ref|YP_004370106.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453096|gb|AEB08925.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM 11109] Length = 415 Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 164/418 (39%), Positives = 238/418 (56%), Gaps = 21/418 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+ +V V+ A + PTPIQ K IPL++Q HDV G+A TGTGKTA+FVLP+L Sbjct: 1 MEFSIFDFHHQVTAGVVAARFRTPTPIQAKAIPLIMQGHDVVGLAHTGTGKTAAFVLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +G R R L++ PTRELA Q+ + G L + GG+ F Q KL+ Sbjct: 61 HRLMQGERR--QVRALVIAPTRELAQQIHEAIGTLGSRTGLRSVTIYGGVGFNPQVDKLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA++++ PGR+LDH N+G + ++N+E+LV+DE+DRM DMGF+P I+ I VP RQT Sbjct: 119 RGAEIVVACPGRLLDHMNQGTIDLSNLEVLVLDESDRMFDMGFLPDIRKIIKHVPTERQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D++ ++ L+ P ++VN A + H K ALL +LL+ Sbjct: 179 LLFSATMPDDILHLAHEVLKAPVTVQVNNIGP-AINVSHRLYPIKQHL--KTALLLELLR 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +T ++ +IF K L L K G+ ++ GN+ Q R +++ F+ GT Q++V Sbjct: 236 HTNT-ESVLIFTRTKHRAKRLGEQLGKAGYRATSLQGNLSQGRRQAVMNGFRNGTFQILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+D+P+ + Y HRIGRTGR + G AFT + ED + I Sbjct: 295 ATDIAARGIDVTQISHVINYDMPDTIDAYTHRIGRTGRNTKTGDAFTFITSEDEDMVRRI 354 Query: 361 EKLIEKKV--------DWLNGDL---SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407 E ++ +V D+ D L PL + AQ RK P K G D Sbjct: 355 ENVLRTRVRHCILDGFDYKKADALPDCKLARPLSQ---AQRRRERKKTE-PSKGRGKD 408 >gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus VM573] gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus VM603] gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus VM603] gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus VM573] Length = 422 Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 151/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGL P ++ + D G V PTPIQ + IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 6 ITFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65 Query: 61 T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +E+ R + R L+L PTRELA QV D+ + Y K L + + GG + Q Sbjct: 66 QRFIEQPWVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQL 125 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT +++ V+ +++P ++V +STAET++ +K LL Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPVEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G + Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQ 362 Query: 357 IDAIEKLIEKKV--DWLNG 373 ++AIE+L+ ++ +WL G Sbjct: 363 LEAIERLLNTRLPQEWLKG 381 >gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719] gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719] Length = 449 Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 151/366 (41%), Positives = 225/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ G+ PTPIQ + IP L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV + YG++ L A+ GG+ Q K Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D ++ ++ L++P IEV+ ++ A+++ V +K L L Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKVELFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ + + ++F +K+V L L++QG + +IHG+ Q +R++ L FK G + L Sbjct: 239 LQA-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 MVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIETLI 363 >gi|87120846|ref|ZP_01076739.1| ATP-dependent RNA helicase [Marinomonas sp. MED121] gi|86164074|gb|EAQ65346.1| ATP-dependent RNA helicase [Marinomonas sp. MED121] Length = 443 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 158/378 (41%), Positives = 223/378 (58%), Gaps = 20/378 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS ++ AV GY +PT IQ + IP +L ++ +QTGTGKTASFVLP+L Sbjct: 1 MSFAKLGLSTPILNAVAKLGYTQPTSIQKQAIPAILLDRNLLAASQTGTGKTASFVLPLL 60 Query: 61 TILEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L + R R + R L+L PTRELA QV ++ +YGK + T L GG+ Sbjct: 61 EKLFRNRRYNGQTKVRGKRVRILVLTPTRELATQVEESIAEYGKELDFTSMALYGGVDEV 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q ++L G D L+ TPGR++D ++ L + +E LV+DEADRMLDMGFI I NI Sbjct: 121 PQKERLIEGVDFLVATPGRLVDMVHQRALHFDEVETLVLDEADRMLDMGFIDDIYNIIDR 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENF----LQNPK------RIEVNTPSSTAETIEHCFVA 223 +P RQ LLFSAT+ D ++ +S F ++N + I ++ ++A +I+ C + Sbjct: 181 LPDDRQNLLFSATLNDHVRNLSTTFSGVGMENKEFYDDLLEINISPKETSASSIDQCLIT 240 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 K ALL L++ Q+ +IF +K L LEK+G IHG+ Q Sbjct: 241 V--DKDTKSALLSHLIKEQE-WDQALIFIEKKHGAAKLVSQLEKRGIKADCIHGDRSQSM 297 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R K+L+ FK G ++ +VA+ +AARG+DI D+ V N+D+P + E YIHRIGRTGRAG G Sbjct: 298 REKVLAEFKSGELKYLVATGVAARGIDIGDLTRVVNYDLPFKPEEYIHRIGRTGRAGAAG 357 Query: 344 KAFTLVAKEDIKHIDAIE 361 +A + VA D K++ AIE Sbjct: 358 EAVSFVAMGDFKNLCAIE 375 >gi|150376621|ref|YP_001313217.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium medicae WSM419] gi|150031168|gb|ABR63284.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae WSM419] Length = 498 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 162/415 (39%), Positives = 242/415 (58%), Gaps = 4/415 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +++ + G+ KPTPIQ + IPLVLQ D+ G+AQTGTGKTA+F LPM+ Sbjct: 4 FKELGLSQEILATLTANGFEKPTPIQTQAIPLVLQGRDLIGLAQTGTGKTAAFGLPMIEK 63 Query: 63 LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ R R R LIL PTREL Q+A N + + K + V +++GG+ Q ++L Sbjct: 64 LQADGKRPDPRNIRALILAPTRELVNQIATNLKLFVKKTPIKVGVVVGGVSINKQTEQLA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD +R + + LV+DEAD+MLD+GFI ++ I LVP RQT Sbjct: 124 RGVDILVATPGRLLDLISRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPKNRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + +++ +L +P ++EV P A+ +E + K L Q L Sbjct: 184 LLFSATMPKLIAELAGEYLTDPVKVEVTRPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + ++F K L L++ GF +IHGN Q R + L F++G I+++V Sbjct: 244 NPDGLS--LVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRVLV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIP V HV+N+D+P A+ Y+HRIGRT R GR G A A ++I+ + I Sbjct: 302 ATDVAARGIDIPGVTHVYNYDLPEVADAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 361 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 EKL+ ++ +G++ + K + N + N Q+ G R + S Sbjct: 362 EKLMGIEIAVASGEVPADQARPSKGRGGRGNAQSRGNGAGQRQGGPRRDRPQRQS 416 >gi|18395852|ref|NP_566141.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase [Arabidopsis thaliana] gi|16226725|gb|AAL16243.1|AF428313_1 AT3g01540/F4P13_9 [Arabidopsis thaliana] gi|15215694|gb|AAK91393.1| AT3g01540/F4P13_9 [Arabidopsis thaliana] gi|32306509|gb|AAP78938.1| At3g01540 [Arabidopsis thaliana] gi|332640163|gb|AEE73684.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana] Length = 618 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G P+++ VL AG+ PTPIQ ++ P+ +Q D+ IA+TG+GKT +++P Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L++ R RM P L+L PTRELA Q+ + K+G++ ++ L GG P Q + L Sbjct: 218 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 277 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD+++ TPGR+ D ++ + I LV+DEADRMLDMGF P I+ I +P RQ Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337 Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 TL+++AT ++K++ + L NP ++ V+ + +H V + ++ L+ Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR---LE 394 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L+SQ+ IIFC+ K+ L +L +Q F AIHG+ Q R +L+ F+ G Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRT 453 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLD+ D+ V N+D PN E+Y+HRIGRTGRAG G+AFT +D KH Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 513 Query: 357 IDAIEKLIE 365 + K++E Sbjct: 514 ASDLIKILE 522 >gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] Length = 492 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 151/375 (40%), Positives = 223/375 (59%), Gaps = 8/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS V+ A+ GY +PTPIQ + IP VL+ D+ GIAQTGTGKTA+F+LP + Sbjct: 6 FDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 65 Query: 63 LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + R L+L PTRELA Q+A + + YG L V ++GG KL Sbjct: 66 LREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSVGKDRNKLH 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD ++ +N +EILV+DEAD+MLD+GFI ++ I LVP RQT Sbjct: 126 RGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVPAERQT 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++Q++ + +NP ++ V ++TAE I+ Q +K AL++ +L+ Sbjct: 186 LFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLF--MVQQDEKQALIEMILK 243 Query: 241 SQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + + ++F K + L + G AIHGN Q R + L FK Sbjct: 244 GRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKT 303 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++A+D+AARG+DIP V HV N+++PN E Y+HRIGRT RAG+ G A A+++ + Sbjct: 304 PILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAY 363 Query: 357 IDAIEKLIEKKVDWL 371 + I+K + + D L Sbjct: 364 LKDIQKNTDAEFDRL 378 >gi|308389528|gb|ADO31848.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha710] Length = 457 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 160/423 (37%), Positives = 251/423 (59%), Gaps = 21/423 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL ++V A+ GY PTPIQ IP L HD+ AQTGTGKTA+F+LP L Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L+ P R L+L PTRELA Q+ N + Y KN L +L GG+ + Q Sbjct: 65 LKSYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTA 124 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G ++++ T GR+LDH + + +N +EI+V+DEADRMLDMGFI I+ I ++P Sbjct: 125 DLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQ 184 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT + ++K++++F+ P+ +EV ++T +E +A +K LL++ Sbjct: 185 RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAV--DTIQKRNLLER 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ M I+FC K++V + L ++ S AIHG+ Q+SR++ L+ FK+G ++ Sbjct: 243 LIVDLH-MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ V N+++P + E+Y+HRIGRTGRAG G A +L+ + + K Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMF 361 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN-YSSQ 416 ++I++L K+ +E+I+ + + P+K + R++N Y S Sbjct: 362 ESIKELTGNKL------------LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESA 409 Query: 417 KSH 419 K+ Sbjct: 410 KAQ 412 >gi|297578974|ref|ZP_06940902.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385] gi|297536568|gb|EFH75401.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385] Length = 398 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 226/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++ +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 NEQQWVQ-ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125] gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125] Length = 539 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 231/368 (62%), Gaps = 7/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L + ++ A+++ G+ +P+PIQ K IP +L DV G AQTGTGKTA+F +P++ Sbjct: 6 IKFNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVV 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + GR + LIL PTRELA QV+ +K K+ + + GG Q K L+ Sbjct: 66 EKVSTGR----HVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIKALK 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V+I TPGRI+DH R L+++++ +++DEAD MLDMGFI I++I V RQT Sbjct: 122 QGVQVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNERQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+S ++ +P+ + +N TA +I+ + + K L +++ Sbjct: 182 LLFSATMPPAIKKLSRKYMNDPQTVSINRREVTAPSIDQFYYKVLER--NKLDSLCRIID 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+ + GI+FC KK V L +L+ +G+ +HG++ Q R ++ F++ +I+ ++ Sbjct: 240 SEQ-IDLGILFCRTKKGVAELTEALQARGYIADGLHGDLTQSQRDAVMRKFRDSSIEFLI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N+D+P E+Y+HRIGRTGRAGR G A TLV ++KH+ +I Sbjct: 299 ATDVAARGIDVGNVSHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSI 358 Query: 361 EKLIEKKV 368 E+ I+ + Sbjct: 359 EQEIKMSI 366 >gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] Length = 502 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 150/368 (40%), Positives = 221/368 (60%), Gaps = 10/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + GL+ +VV AV G+ + TPIQ TIP L+ D+ G AQTGTGKT +F +P++ Sbjct: 4 FYEFGLNSEVVRAVTQMGFEEATPIQAATIPTALEGKDIIGQAQTGTGKTGAFGVPLIDR 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + V+ LIL PTRELA QVA++ K+GK + ++ GG Q + L+ Sbjct: 64 INIENDHVQ---ALILAPTRELANQVAESLFKFGKYKGVRTVVVYGGQDMRKQIRDLKNK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR++DH R + + +E +V+DEAD ML+MGFI I+ I S VP RQTLL Sbjct: 121 PHVVVATPGRLMDHMRRKTIRLGQVETVVLDEADEMLNMGFIEDIETILSEVPNERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLLQ 240 FSATM ++K+++ F+ PK I V + T E IE +V + ++ C + Sbjct: 181 FSATMPKRIEKLAQTFMSEPKLIAVKSKEVTMENIEQQYVEVHERQKFDTLCRFI----- 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 T + I+F K+ V L +L K+G+ IHG+++Q R +L FK G + ++V Sbjct: 236 DIHTPELAIVFGRTKRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGLVDVLV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T + +H+ I Sbjct: 296 ATDVAARGLDITGVTHVYNFDLPQDPESYVHRIGRTGRAGKSGLALTFATPREREHVKTI 355 Query: 361 EKLIEKKV 368 E++ +KK+ Sbjct: 356 EQVSKKKM 363 >gi|30678365|ref|NP_850492.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase [Arabidopsis thaliana] gi|42572223|ref|NP_974206.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase [Arabidopsis thaliana] gi|79295442|ref|NP_001030619.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase [Arabidopsis thaliana] gi|108861885|sp|Q8H136|RH14_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 14 gi|6016713|gb|AAF01539.1|AC009325_9 RNA helicase, DRH1 [Arabidopsis thaliana] gi|3149952|dbj|BAA28347.1| DRH1 [Arabidopsis thaliana] gi|332640162|gb|AEE73683.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana] gi|332640164|gb|AEE73685.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana] gi|332640165|gb|AEE73686.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana] Length = 619 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G P+++ VL AG+ PTPIQ ++ P+ +Q D+ IA+TG+GKT +++P Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L++ R RM P L+L PTRELA Q+ + K+G++ ++ L GG P Q + L Sbjct: 218 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 277 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD+++ TPGR+ D ++ + I LV+DEADRMLDMGF P I+ I +P RQ Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337 Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 TL+++AT ++K++ + L NP ++ V+ + +H V + ++ L+ Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR---LE 394 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L+SQ+ IIFC+ K+ L +L +Q F AIHG+ Q R +L+ F+ G Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRT 453 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLD+ D+ V N+D PN E+Y+HRIGRTGRAG G+AFT +D KH Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 513 Query: 357 IDAIEKLIE 365 + K++E Sbjct: 514 ASDLIKILE 522 >gi|242280538|ref|YP_002992667.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM 2638] gi|242123432|gb|ACS81128.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM 2638] Length = 493 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 159/407 (39%), Positives = 235/407 (57%), Gaps = 21/407 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59 M F +++ + GY PTPIQ K IP VL+ DV G+AQTGTGKTA+F LP M Sbjct: 1 MSFKQFSFDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIM 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +LEK + R L+L PTRELA Q+ +NF + G + A + GG+ Q + Sbjct: 61 QRLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELGVEAGIRSAAVFGGVGAMPQIQAA 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 R + ++ C PGR+LD N+G + ++ ++ LV+DEADRMLDMGF+P I+ I S +P RQ Sbjct: 121 RRSSVIVAC-PGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM D+++ +++ L P ++V ++ A+T+EH F +Q+ K L + L Sbjct: 180 NLLFSATMPDDIRDLADKILYRPATVQVAN-TAPAKTVEHVFYPV-SQHLKNNLLFKVLE 237 Query: 240 QSQ-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q+ D++ ++F K NL L +G + GN+ Q R + L F++G+ ++ Sbjct: 238 QTDYDSL---LVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKV 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARG+D + HV N DVP+ AE Y HRIGRTGRAGR G AF+ V ++D++ + Sbjct: 295 MVATDIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMR 354 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 IEK + ++ LE D + N +P P K G Sbjct: 355 EIEKAVGYSIEHRT---------LEDFDYDKPN----THPAPAKRGG 388 >gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC 35937] gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC 35937] Length = 636 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 71 ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 246 EPFDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ V HV N+D+P E+Y+HRIGRTGRAGR+G A V + + + Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|262047224|ref|ZP_06020182.1| helicase [Lactobacillus crispatus MV-3A-US] gi|260572469|gb|EEX29031.1| helicase [Lactobacillus crispatus MV-3A-US] Length = 494 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 154/396 (38%), Positives = 244/396 (61%), Gaps = 16/396 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++K ++ +I+EPTRELA Q + + G++ + V ++ GG Q + L+ Sbjct: 61 QMIDKKEKAIQ---AVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +L+ TPGR+LDH R + ++ ++ +V+DEAD MLDMGFI I++I +Q Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + ++ E F+ +P+ + + TA+ IE FV A+ S+K ++ +L+ Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFV--RAKESEKFDIMCRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + ++ Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE+L +KK +S L PP + D A H ++ Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381 >gi|17065030|gb|AAL32669.1| RNA helicase, DRH1 [Arabidopsis thaliana] Length = 619 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G P+++ VL AG+ PTPIQ ++ P+ +Q D+ IA+TG+GKT +++P Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L++ R RM P L+L PTRELA Q+ + K+G++ ++ L GG P Q + L Sbjct: 218 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 277 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD+++ TPGR+ D ++ + I LV+DEADRMLDMGF P I+ I +P RQ Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337 Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 TL+++AT ++K++ + L NP ++ V+ + +H V + ++ L+ Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR---LE 394 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L+SQ+ IIFC+ K+ L +L +Q F AIHG+ Q R +L+ F+ G Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRT 453 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLD+ D+ V N+D PN E+Y+HRIGRTGRAG G+AFT +D KH Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 513 Query: 357 IDAIEKLIE 365 + K++E Sbjct: 514 ASDLIKILE 522 >gi|197123442|ref|YP_002135393.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K] gi|196173291|gb|ACG74264.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K] Length = 478 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 151/399 (37%), Positives = 228/399 (57%), Gaps = 15/399 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LS K + A+ AG+ PTPIQ + IP L DV G A TGTGKTA+F+LP++ Sbjct: 9 FADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIER 68 Query: 63 LEKGRARVR--------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L G + R PR L+L PTRELA Q+A E++G+ ++ AL+IGG+ A Sbjct: 69 LAGGAPKDRPAAAHGKPGPRALVLAPTRELAVQIAGELERFGRGRHVRGALVIGGVGMGA 128 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q+ L R +V++ TPGR++DH +G ++ +E+LV+DEADRMLDMGF P ++ I + V Sbjct: 129 QSAAL-RDHEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARV 187 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQTLLFSATM E+ + L++P R+EV + AE E + L Sbjct: 188 PKVRQTLLFSATMAGEVADFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLL 247 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 T+ +F K+ + +L++ G V IH + Q R L F++G Sbjct: 248 ALLEEDDLSTL----VFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDG 303 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +++VA+D+AARG+D+ ++GHV NFD+P+ E+Y+HR+GRT R G+A + E++ Sbjct: 304 QYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEEL 363 Query: 355 KHIDAIEKLIEKKVDW--LNGDLSSLNPPLEKIDIAQHN 391 + IE+L + + + ++ L++ D AQ N Sbjct: 364 DLLRDIERLTRAPIPRAEVPREHATFQAELQRADAAQAN 402 >gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. spizizenii str. W23] gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. spizizenii str. W23] Length = 494 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 226/369 (61%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ A+ G+ + TPIQ +TIPL L DV G AQTGTGKTA+F +P++ Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + ++ +++ PTRELA QV++ K G++ V + GG Q + L++ Sbjct: 65 INPESPNIQ---AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR + +NN+ +V+DEAD ML+MGFI I++I S VP QTLL Sbjct: 122 PHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ P+ ++V T I+ ++ Q KK L +LL Q Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM L FKEG I+++VA+ Sbjct: 240 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAG+ G A T + + + AIE+ Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 358 Query: 363 LIEKKVDWL 371 ++K+D + Sbjct: 359 TTKRKMDRM 367 >gi|220934849|ref|YP_002513748.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996159|gb|ACL72761.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 447 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 237/380 (62%), Gaps = 16/380 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ + GY PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L + Sbjct: 7 FADLGLADPLLRALEETGYESPTPIQAQAIPEVLKGRDLRAAAQTGTGKTAGFTLPILQL 66 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + G R PR L+L PTRELAAQV ++ E YGK L ++ GG+ Q Sbjct: 67 LSHRPALKSGPGR---PRCLVLTPTRELAAQVHESVETYGKYLTLRSLVMFGGVNINPQI 123 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L D+++ TPGR+LDH + + ++ +EILV+DEADRMLDMGFI I+ I L+P Sbjct: 124 RALRGQVDIIVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIRRIMKLLPA 183 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCAL 234 RQ LLFSAT +DE++ +++ L NP +EV ++TAE ++ V ++A K L Sbjct: 184 RRQNLLFSATFSDEMRALADGILTNPASVEVAARNTTAERVQQQVHLVESHA----KRDL 239 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ Q+ + ++F K L L K G AIHGN Q +R K L FK G Sbjct: 240 LSHLIK-QNQWQQVLVFTRTKHGANRLAEKLSKDGIPAAAIHGNKSQAARTKALDQFKNG 298 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+AARGLDI + V NF++PN E+Y+HRIGRTGRAG G A +LV +E++ Sbjct: 299 RIPVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGAAGAALSLVDREEM 358 Query: 355 KHIDAIEKLIEKKVDWLNGD 374 + + +IE+LI + ++ + + Sbjct: 359 RLLTSIERLIRRPIERIQTE 378 >gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 632 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 71 ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 246 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR+G A V + + + Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865] gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865] Length = 643 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 227/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 71 ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 246 EPFDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ V HV N+D+P E+Y+HRIGRTGRAGR G A V + + + Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRS 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|310766260|gb|ADP11210.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617] Length = 638 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 237/377 (62%), Gaps = 11/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGL+ ++ ++ GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ + K+ L V L GG ++ Q + L + Sbjct: 68 IDP---TVKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSY---WTAYGRKTDALTRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 361 RTMKLTIPEVELPNAEL 377 >gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162] gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola DSM 20162] Length = 602 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 147/361 (40%), Positives = 221/361 (61%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ +V+ A+ + GY P+PIQ TIP +L +DV G+AQTGTGKTA+F +P+L+ Sbjct: 30 FLDLGIDERVLRALAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVLSK 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R P+ L+L PTRELA QV++ F KY + N+TV + GG + Q L R Sbjct: 90 ID---GESRTPQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGLRR 146 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++N+E LV+DEAD ML MGF ++ I + P +Q Sbjct: 147 GAQIIVGTPGRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQVA 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+++ +L +P I V ++T I ++ Q +K L +LL+ Sbjct: 207 LFSATMPPAIRKIAKKYLHDPVEISVKAKTATGSNITQRYLQVAHQ--RKLDALTRLLEV 264 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ IIF K L L +G + AI+G+I Q R + + K+G + ++VA Sbjct: 265 EE-FDGMIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVA 323 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V + + AIE Sbjct: 324 TDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIE 383 Query: 362 K 362 K Sbjct: 384 K 384 >gi|153212702|ref|ZP_01948359.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587] gi|124116352|gb|EAY35172.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587] Length = 397 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 225/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKE--TKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] Length = 576 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 216/367 (58%), Gaps = 3/367 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL +++ A+ GY +PTPIQ + IP +L D+ G A TGTGKTA+F LP+L Sbjct: 28 FTDLGLRAELLGALSALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLHR 87 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + GRA P L+L PTRELA QV++ F +YGK+ V + GG P Q + L+ G Sbjct: 88 MPDGRAGGE-PVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDLG 146 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH RG L + + +V+DEAD MLDMGF I+ I P RQT+L Sbjct: 147 VDVVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEHAPQQRQTVL 206 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSATM + ++ L +P RI++ A + Y + K A L ++L Sbjct: 207 FSATMPSRIDGMARQHLTDPVRIQIGREQQVAGETPRVRQSAYIVARAHKPAALGRVLDV 266 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+FC ++ V L ++ +G+ A+HG + Q R +++ + GT L+VA Sbjct: 267 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 325 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+DVP+ E+Y+HRIGR GRAGR G A TL + + + IE Sbjct: 326 TDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIE 385 Query: 362 KLIEKKV 368 ++ +++ Sbjct: 386 RVTGQRI 392 >gi|312978402|ref|ZP_07790144.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus crispatus CTV-05] gi|310894745|gb|EFQ43817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus crispatus CTV-05] Length = 495 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 154/396 (38%), Positives = 244/396 (61%), Gaps = 16/396 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++K ++ +I+EPTRELA Q + + G++ + V ++ GG Q + L+ Sbjct: 61 QMIDKKEKAIQ---AVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +L+ TPGR+LDH R + ++ ++ +V+DEAD MLDMGFI I++I +Q Sbjct: 118 HHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + ++ E F+ +P+ + + TA+ IE FV A+ S+K ++ +L+ Sbjct: 178 TLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVR--AKESEKFDIMCRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + ++ Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE+L +KK +S L PP + D A H ++ Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381 >gi|260175083|ref|ZP_05761495.1| putative ATP-dependent RNA helicase [Bacteroides sp. D2] gi|315923311|ref|ZP_07919551.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697186|gb|EFS34021.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 374 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 153/371 (41%), Positives = 227/371 (61%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L ++ ++ A+ + GY PTPIQ + IP L + D+ G AQTGTGKTASF +P++ Sbjct: 1 MTFKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPII 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ K A+ R + LIL TRELA Q+++ Y K + ++ GG+ Q Sbjct: 61 QHLQMNKEAAKCRGIKALILTSTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDM 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD N+G + ++ I+ V+DEADRMLDMGFI I+ I +P + Sbjct: 121 LHKGIDILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM D + ++ + L+NP RI + SST + IE + + + +K LL + Sbjct: 181 QTLFFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAIEQ--MVYFVEKKEKSLLLVSI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ + ++ ++F K N + L K G AIHGN Q +R L NFK G ++ Sbjct: 239 LQKSED-QSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K ++ Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVN 357 Query: 359 AIEKLIEKKVD 369 I+KL KK++ Sbjct: 358 DIQKLTGKKLN 368 >gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10] Length = 566 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 220/361 (60%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P V+ A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +P+L+ Sbjct: 15 FADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ A + L+L PTRELA QVA+ F +YG + + V + GG + Q L+R Sbjct: 75 ID---AASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L +++++ LV+DEAD ML MGF + I S P +Q Sbjct: 132 GAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++ +L +P + ++TAE I ++ +K L ++L+ Sbjct: 192 LFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAG--PRKMDALTRVLEV 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI+G+I Q R + ++ K+G I ++VA Sbjct: 250 E-PFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + + AIE Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIE 368 Query: 362 K 362 K Sbjct: 369 K 369 >gi|118443840|ref|YP_877556.1| ATP-dependent RNA helicase [Clostridium novyi NT] gi|118134296|gb|ABK61340.1| ATP-dependent RNA helicase [Clostridium novyi NT] Length = 476 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 232/364 (63%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+D LS +++ + GY PT +Q KTIPLVLQ D+ +QTG+GKTASF +P+ Sbjct: 1 MNFSDFKLSSEILKTIKMLGYKNPTEVQEKTIPLVLQGKDIIVKSQTGSGKTASFGIPLC 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK + + P+ LIL PTRELA Q+ ++ G+ + + G P Q +L+ Sbjct: 61 ---EKVKLENKKPQALILTPTRELAVQIKEDISNIGRFKKVKCTAVYGKEPISIQKNQLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR DH +G L +++I+ L+IDEAD+ML+MGFI +++I + R T Sbjct: 118 QRVHIVVGTPGRTFDHIQKGNLDLSDIKYLIIDEADKMLNMGFINQVEDIIKEITNDRIT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ + ++K+ + ++ +P++IE++ + T + IE + +SK+ L +++ Sbjct: 178 MLFSATLEERIEKLCKRYMNHPEKIEISKKNVTTDIIEQEYYK--VNHSKRFNTLTKVIY 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + IIFCN K V N+ + ++ QGF+ A+HG +DQ+ R+ +++FK G Q +V Sbjct: 236 AE-VPDSAIIFCNTKVEVGNVANKMKNQGFNAKALHGGMDQKDRLYTINDFKRGKFQFLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N++VP E+Y+HRIGRTGRAG GK+ T V+ + + + I Sbjct: 295 ATDVAARGIDVEEITHVINYEVPVEKESYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEI 354 Query: 361 EKLI 364 E+ I Sbjct: 355 EEYI 358 >gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4] gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121] gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4] gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121] Length = 591 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 149/361 (41%), Positives = 221/361 (61%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + +V+ A+ D GY P+PIQ TIP +L+ DV G+AQTGTGKTA+F +P+L+ Sbjct: 13 FADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLSR 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ ++ + L+L PTRELA QVA+ F KY + L V + GG + Q L R Sbjct: 73 IDTS---IKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGLRR 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +G L + N++ LV+DEAD ML MGF ++ I P +Q Sbjct: 130 GAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILRDTPGDKQVA 189 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++S+ +L NP I V + +STA I ++ Q +K L ++L+ Sbjct: 190 LFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQ--RKLDALTRVLEV 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K+ +L L +G S AI+G+I Q R + + K G + ++VA Sbjct: 248 E-AFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A VA + + +IE Sbjct: 307 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSIE 366 Query: 362 K 362 K Sbjct: 367 K 367 >gi|156973702|ref|YP_001444609.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116] gi|156525296|gb|ABU70382.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116] Length = 411 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 151/362 (41%), Positives = 220/362 (60%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV GY KPT IQ K IP+VL ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLSGRNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R +IL PTRELA QV + E YGKN L + GG+ + Q + L Sbjct: 61 EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR++D + + + + +E+LV+DEAD+MLDMGFI I I +P Q Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT+++ ++ +++N + +P+ I + S++ I+ T K +LL +L Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D ++F K L LEK+G A H +QR R +++ FK G IQ + Sbjct: 239 NEND-WSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC 17982] gi|153798516|gb|EDN80936.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC 17982] Length = 722 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 217/370 (58%), Gaps = 14/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL +++ AV D G+ PTPIQ IP +L+ DV GIAQTGTGKTA+F LP+L I Sbjct: 47 FASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAI 106 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 ++ A R + L+L PTRELA Q A E + + L V + GG P+ Q L+R Sbjct: 107 VD---ADERNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKR 163 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D +G L ++++ +LV+DEAD ML MGF ++ I S P R T Sbjct: 164 GAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTA 223 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL-- 239 LFSATM ++KV+ L++P ++ V+T SST +TI + Y K L ++L Sbjct: 224 LFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVV--PYKHKIGALSRVLAT 281 Query: 240 ------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 + Q+ I+F + +V + L +GF I G++ Q R +++ K Sbjct: 282 RAQHIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKN 341 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G++ ++VA+D+AARGLD+ + V NFDVP E Y+HRIGRTGRAGR G+A T + Sbjct: 342 GSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPRE 401 Query: 354 IKHIDAIEKL 363 + IEKL Sbjct: 402 HGRLRRIEKL 411 >gi|127511883|ref|YP_001093080.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126637178|gb|ABO22821.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 432 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 228/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY K TPIQ + IP + + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + + + R LIL PTREL AQVADN ++Y + ++V + GG+ + Q K Sbjct: 61 QKMFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 +++GAD+++ TPGR+L+H L ++N++ LV+DEADRMLDMGFI IQ I V R Sbjct: 121 VKKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + +++++ L PK I V+ ++TA T+ V + +K LL +L Sbjct: 181 QNLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F ++ L L G +H Q +R + L FKEG ++ Sbjct: 239 I-GKKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRA 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDIP++ +V NFD+P AE+Y+HRIGRTGRAGR G A +LV++E+ + + Sbjct: 298 LVATEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI K+ Sbjct: 358 DIEKLIGNKI 367 >gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 541 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 232/366 (63%), Gaps = 7/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +V+ A+ D G+ +P+PIQ IP+VL+ DV G AQTGTGKTA+F +P++ Sbjct: 19 FESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV-- 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E+ R+ + ++L PTRELA QVA K K + + GG Q + L++G Sbjct: 77 -ERVSTEPRV-QAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQG 134 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH +RG L ++++ ++V+DEAD MLDMGFI I+ I P RQT+L Sbjct: 135 VQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTML 194 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT +E+++++ ++++P+ I VN T I+ + K L +++ S+ Sbjct: 195 FSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLER--NKLDSLCRIVDSE 252 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++ GIIFC K+ V +L +L +G+ +HG++ Q R +++ F++ I+L+VA+ Sbjct: 253 D-IQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVAT 311 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ DV HV N+DVP E+Y+HRIGRTGRAG+ G A TLV + K + IE+ Sbjct: 312 DVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIER 371 Query: 363 LIEKKV 368 I++K+ Sbjct: 372 EIKQKI 377 >gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451] gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451] Length = 422 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 151/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGL P ++ + D G V PTPIQ + IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 6 ITFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65 Query: 61 T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +E+ R + R L+L PTRELA QV D+ + Y K L + + GG + Q Sbjct: 66 QRFIEQPWVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQL 125 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT +++ V+ +++P ++V +STAET++ +K LL Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPVEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G + Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKVGKV 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQ 362 Query: 357 IDAIEKLIEKKV--DWLNG 373 ++AIE+L+ ++ +WL G Sbjct: 363 LEAIERLLNTRLPQEWLKG 381 >gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium intracellulare ATCC 13950] Length = 567 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 219/361 (60%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P V+ AV D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +P+L+ Sbjct: 15 FADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + L+L PTRELA QVA+ F +YG + + V + GG + Q L R Sbjct: 75 ID---VTSTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYSVQLAGLRR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L +++++ LV+DEAD ML MGF + I S P +Q Sbjct: 132 GAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++ +L +P + ++TAE I ++ +K L ++L+ Sbjct: 192 LFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAG--PRKMDALTRVLEV 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI+G+I Q R + ++ K+G+I ++VA Sbjct: 250 E-PFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKDGSIDILVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + + AIE Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIE 368 Query: 362 K 362 K Sbjct: 369 K 369 >gi|15641418|ref|NP_231050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591273|ref|ZP_01678569.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80] gi|121727543|ref|ZP_01680655.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52] gi|147674915|ref|YP_001216964.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395] gi|153817750|ref|ZP_01970417.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457] gi|153821347|ref|ZP_01974014.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33] gi|227081578|ref|YP_002810129.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2] gi|229505017|ref|ZP_04394527.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286] gi|229511313|ref|ZP_04400792.1| ATP-dependent RNA helicase [Vibrio cholerae B33] gi|229518431|ref|ZP_04407875.1| ATP-dependent RNA helicase [Vibrio cholerae RC9] gi|229608021|ref|YP_002878669.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236] gi|254848525|ref|ZP_05237875.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10] gi|255745787|ref|ZP_05419735.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101] gi|262158933|ref|ZP_06030045.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1] gi|262169296|ref|ZP_06036988.1| ATP-dependent RNA helicase [Vibrio cholerae RC27] gi|298498514|ref|ZP_07008321.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757] gi|9655903|gb|AAF94564.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546878|gb|EAX57035.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80] gi|121630127|gb|EAX62530.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52] gi|126511688|gb|EAZ74282.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457] gi|126521165|gb|EAZ78388.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33] gi|146316798|gb|ABQ21337.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395] gi|227009466|gb|ACP05678.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2] gi|227013322|gb|ACP09532.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395] gi|229345146|gb|EEO10120.1| ATP-dependent RNA helicase [Vibrio cholerae RC9] gi|229351278|gb|EEO16219.1| ATP-dependent RNA helicase [Vibrio cholerae B33] gi|229357240|gb|EEO22157.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286] gi|229370676|gb|ACQ61099.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236] gi|254844230|gb|EET22644.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10] gi|255736862|gb|EET92259.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101] gi|262022109|gb|EEY40818.1| ATP-dependent RNA helicase [Vibrio cholerae RC27] gi|262029118|gb|EEY47770.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1] gi|297542847|gb|EFH78897.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757] Length = 397 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|229521507|ref|ZP_04410926.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80] gi|229341605|gb|EEO06608.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80] Length = 397 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|116693760|ref|YP_839293.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia HI2424] gi|116651760|gb|ABK12400.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia HI2424] Length = 507 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 224/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + Y PTP+Q K IP+VL DV AQTGTGKTA F LP+L Sbjct: 24 MSFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 83 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F +YGK +L GG+ Q K Sbjct: 84 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 143 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 144 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 203 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++K++ L++P I V+ P++TA I+ V K L L Sbjct: 204 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPV--DKRNKPDLFMHL 261 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +Q+ ++ ++F + V L LEK G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 262 V-AQNRWEHALVFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQM 320 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 321 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 380 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 381 AIEALIRQ 388 >gi|170736938|ref|YP_001778198.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169819126|gb|ACA93708.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia MC0-3] Length = 483 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 224/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + Y PTP+Q K IP+VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F +YGK +L GG+ Q K Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++K++ L++P I V+ P++TA I+ V K L L Sbjct: 181 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPV--DKRNKPDLFMHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +Q+ ++ ++F + V L LEK G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 239 V-AQNRWEHALVFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 358 AIEALIRQ 365 >gi|259907048|ref|YP_002647404.1| ATP-dependent RNA helicase DeaD [Erwinia pyrifoliae Ep1/96] gi|224962670|emb|CAX54125.1| Cold-shock DEAD-box protein A [Erwinia pyrifoliae Ep1/96] gi|283476844|emb|CAY72682.1| Cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163] Length = 638 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 237/377 (62%), Gaps = 11/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGL+ ++ ++ GYVKP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ V+ P+ L+L PTRELA QVA+ + K+ L V L GG ++ Q + L + Sbjct: 68 IDPT---VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++++ F+++P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSY---WTAYGRKTDALTRFLEA 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 242 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 301 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 361 RTMKLTIPEVELPNAEL 377 >gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 852 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 152/394 (38%), Positives = 234/394 (59%), Gaps = 16/394 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ AV D G+V PT IQ + IP++L DV G+AQTGTGKTA+F LP+L Sbjct: 149 FADLGLPSDLLKAVTDMGFVSPTAIQKEAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDA 208 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ +R + + L+L PTRELA Q A+ + ++ L V + GG P+ Q L+ Sbjct: 209 VD---SRDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGALKG 265 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D ++G L ++++ V+DEAD ML MGF ++ I +P R+T Sbjct: 266 GAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPTERRTA 325 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +Q V+ L P ++EV+ P+ST T+ + + K + ++L Sbjct: 326 LFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVV--PFRHKIGAVSRVLAV 383 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + I+F K ++ L +G AI G++ QR R +++ + GT+ ++VA Sbjct: 384 TDA-EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVA 442 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V NFDVP AE Y+HRIGRTGRAGRHG+A T + ++ + IE Sbjct: 443 TDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIE 502 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 +L +++ + +L P D+++H ARK Sbjct: 503 RLTGSRLEEI-----TLPSP---ADVSEH-RARK 527 >gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309] gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309] Length = 722 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 217/370 (58%), Gaps = 14/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL +++ AV D G+ PTPIQ IP +L+ DV GIAQTGTGKTA+F LP+L I Sbjct: 47 FASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAI 106 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 ++ A R + L+L PTRELA Q A E + + L V + GG P+ Q L+R Sbjct: 107 VD---ADERNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKR 163 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D +G L ++++ +LV+DEAD ML MGF ++ I S P R T Sbjct: 164 GAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTA 223 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL-- 239 LFSATM ++KV+ L++P ++ V+T SST +TI + Y K L ++L Sbjct: 224 LFSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVV--PYKHKIGALSRVLAT 281 Query: 240 ------QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 + Q+ I+F + +V + L +GF I G++ Q R +++ K Sbjct: 282 RAQHIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKN 341 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G++ ++VA+D+AARGLD+ + V NFDVP E Y+HRIGRTGRAGR G+A T + Sbjct: 342 GSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPRE 401 Query: 354 IKHIDAIEKL 363 + IEKL Sbjct: 402 HGRLRRIEKL 411 >gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 640 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 230/367 (62%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 + P+ L+L PTRELA QVA+ F Y K N V + GG + Q L+R Sbjct: 68 VTSQTT----PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L +++++ LV+DEAD ML MGFI I+ I P RQ Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L++P + + + +T E+IE FV +Q++K AL++ +L+ Sbjct: 184 LFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQV-SQHNKLEALVR-VLEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 242 ENT-EGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P AE Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360 Query: 362 KLIEKKV 368 + ++ Sbjct: 361 RSTNSRI 367 >gi|294634522|ref|ZP_06713057.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685] gi|291092036|gb|EFE24597.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685] Length = 643 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ D GY KP+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 13 FADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNN 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 73 IDPS---LKAPQVLVLAPTRELAVQVAEAMTDFSKHLHGINVVALYGGQRYDVQLRALRQ 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L + ++ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 130 GPQIVVGTPGRLLDHLKRGTLSLASLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 189 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F+ P+ + + + +T I + Y +K L + L++ Sbjct: 190 LFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGM--RKNEALVRFLEA 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 248 ED-FDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 307 TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIE 366 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 367 RTMKLTIPEVELPNAEL 383 >gi|183179390|ref|ZP_02957601.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3] gi|183012801|gb|EDT88101.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3] Length = 397 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|283779400|ref|YP_003370155.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi DSM 6068] gi|283437853|gb|ADB16295.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068] Length = 458 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 146/364 (40%), Positives = 225/364 (61%), Gaps = 4/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA + LS +++ A+ AGY PTPIQ IP L+ DV G A+TGTGKTASFV+P+L + Sbjct: 14 FASMDLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILEL 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ R P+ LIL PTRELA QV D K + + A + GG P ++Q KL++G Sbjct: 74 LDIERG-APTPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGKPIKSQVDKLKKG 132 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG + +IE +V+DEADRMLD+GF P I+ I P RQTLL Sbjct: 133 CHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQTLL 192 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SAT+ + K+++ ++ P+ + + + +TIE + ++ +K LL +LL + Sbjct: 193 LSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTV--EHDRKFDLLMKLLLRE 250 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + K I+FC K+ + L K+ + AIHG++ Q R ++++ F++G+++ +VA+ Sbjct: 251 EP-KQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVAT 309 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+ RG+D+ V H+ NFD+P ++Y+HR+GRTGR GR G A+T V ++ + IE+ Sbjct: 310 DVIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEE 369 Query: 363 LIEK 366 I K Sbjct: 370 RINK 373 >gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810] gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810] Length = 669 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 143/365 (39%), Positives = 221/365 (60%), Gaps = 7/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D+ L + AV + G+ P+ IQ + IP +L+ DV G+AQTGTGKTA+F LP+L Sbjct: 86 FDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLAA 145 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ +R + L+L PTRELA QVAD + + L V L GG P+ Q + L R Sbjct: 146 IDPS---LREVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALAR 202 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++ I + V+DEAD ML MGF ++ I S P TRQ Sbjct: 203 GAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQVA 262 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +Q+V++ +Q+P R+ V+ SST +++ + + + L ++L + Sbjct: 263 LFSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVV--PFRHRTGALARVLAT 320 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + I+F + + +L +G +I G++ Q+ R KI+ ++G++Q++VA Sbjct: 321 SDA-EAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVA 379 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V NFDVP AE+Y+HRIGRTGRAGR G+A T + + + + IE Sbjct: 380 TDVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNIE 439 Query: 362 KLIEK 366 + ++ Sbjct: 440 RATKQ 444 >gi|88802750|ref|ZP_01118277.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P] gi|88781608|gb|EAR12786.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P] Length = 411 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 158/408 (38%), Positives = 246/408 (60%), Gaps = 20/408 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+D + ++ AV + + P+ +Q + IPL+L++ +V AQTGTGKTA+F LP++ Sbjct: 1 MQFSDFSFNKSILKAVAEERFQTPSLVQQEAIPLILEKKNVIVSAQTGTGKTAAFALPII 60 Query: 61 TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L EKG +++ +LI+ PTRELA Q+ +NF+ + K NL + + GG+ E Sbjct: 61 QLLFDGQDAEKGEKKIK---SLIITPTRELAIQILENFKSFSKYSNLRASAVFGGVSLEP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L +G D+LI TPGR++D +G + ++ IEI V+DEAD MLDMGFI I+ I Sbjct: 118 QKEILSKGIDILIATPGRLIDLHTQGNIDLSAIEIFVLDEADLMLDMGFINDIKKIERFC 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P +QTLLFSATM +++ ++++ +++P +E+N +TA+ I Y K L Sbjct: 178 PKQKQTLLFSATMPEKIVELAKKVIKSPVVVEINPEETTAKNIGQLLY--YLPKKNKTDL 235 Query: 235 LQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL++ NG IIF K V L SL K G+ V +IHG+ Q R K + +FK Sbjct: 236 CLNLLKN---TINGKIIIFRRTKFGVDKLEESLTKNGYKVASIHGDKTQGIRNKAIEDFK 292 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 T +++A+D+A+RG+DI +V + NFD+PN E YIHRIGRTGRAG+ G AF+ + + Sbjct: 293 NKTAHILIATDVASRGIDITNVDAIINFDIPNVPETYIHRIGRTGRAGKSGIAFSFCSPD 352 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKI----DIAQHNHARKN 396 + +I IE LIE+ + + L ++ P +K +++H RK+ Sbjct: 353 ENAYIKLIETLIERPIKVITDHLYIISKPKQKRTQENTVSKHKKGRKS 400 >gi|153826995|ref|ZP_01979662.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2] gi|149739156|gb|EDM53442.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2] Length = 397 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Carnobacterium sp. AT7] gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Carnobacterium sp. AT7] Length = 527 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 150/381 (39%), Positives = 231/381 (60%), Gaps = 13/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+P+++ +V G+ + TPIQ +TIPL L+ DV G AQTGTGKTA+F LPML Sbjct: 1 MKFSELGLAPELLKSVERLGFEEATPIQGQTIPLALEGKDVIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ L++ PTRELA Q + + ++ + V ++ GG Q + L+ Sbjct: 61 QKIDVNNRNVQ---GLVIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIRALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R L + ++E LV+DEAD ML+MGFI I+ I VP RQT Sbjct: 118 DAPHIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F++ P+ +++ + + IE FV + +K ++ +L Sbjct: 178 LLFSATMPPAIKRIGVRFMKEPEHVQIKATTMSDSLIEQFFV--RCKDFEKFDIMTRLFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + IIF K+ V L LE +G+ IHG++ Q+ RM +L FK G + ++V Sbjct: 236 VQ-TPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKLDVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRAG+ G + T + ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 E L +K ++ L PP Sbjct: 355 EDLTKKA-------MTPLRPP 368 >gi|107027528|ref|YP_625039.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054] gi|105896902|gb|ABF80066.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU 1054] Length = 507 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 223/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + Y PTP+Q K IP+VL DV AQTGTGKTA F LP+L Sbjct: 24 MSFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 83 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F +YGK +L GG+ Q K Sbjct: 84 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 143 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 144 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 203 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++K++ L++P I V+ P++TA I+ V K L L Sbjct: 204 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPV--DKRNKPDLFMHL 261 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +Q+ + ++F + V L LEK G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 262 V-AQNRWERALVFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQM 320 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 321 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 380 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 381 AIEALIRQ 388 >gi|149192500|ref|ZP_01870684.1| RhlE [Vibrio shilonii AK1] gi|148833665|gb|EDL50718.1| RhlE [Vibrio shilonii AK1] Length = 397 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 148/362 (40%), Positives = 226/362 (62%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ + GY KPT IQ K IP+VL+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MSFSKLGLSQPLLDAIKEVGYQKPTTIQTKAIPIVLKGSNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G+ R + R +IL PTRELA QV + E Y + ++ + GG+ + Q + L Sbjct: 61 ERLSAGQTERKKRARAIILTPTRELALQVNQSIEAYAQFTSIKSMAMFGGVDYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR++D + + + + +E LV+DEAD+MLDMGFI I I + VP Q Sbjct: 121 IDGVDIVVATPGRLIDLYGQRAIHFDEVETLVLDEADKMLDMGFIEAINKIIARVPEDAQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT+++ ++ ++++ + NP+ I + S++ I+ V K +LL LL Sbjct: 181 SLLFSATLSNPVRDLAKSAIDNPEEIAITKHSASKSNIKQWIVTV--DKDMKSSLLSHLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q Q+ K +IF K L LEK+G + A H +Q+ R +++ +FK G IQ + Sbjct: 239 Q-QNQWKQALIFIETKHGAAKLVSQLEKRGIAAEAFHSGRNQKVRQQLIESFKAGEIQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A+ Y+HRIGRTGRA G+A +LV+K++ K++ Sbjct: 298 VATGVAARGIDIENLPVVINYDLPYPADEYVHRIGRTGRADAAGEALSLVSKDNFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1] Length = 449 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 225/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ G+ PTPIQ + IP L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV + YG++ L A+ GG+ Q K Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGGDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D ++ ++ L++P IEV+ ++ A+++ V +K L L Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ + + ++F +K+V L L++QG + +IHG+ Q +R++ L FK G + L Sbjct: 239 LQT-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIETLI 363 >gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis PC909] gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1] gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis PC909] gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1] Length = 538 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 144/372 (38%), Positives = 237/372 (63%), Gaps = 11/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LSP + A+ + GYVKP+PIQ + IP+VL D+ G AQTGTGKTA+F+LP I Sbjct: 6 FKDLALSPSTLKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLP---I 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 LEK + + + L+L PTRELA QV + +K+ +N ++ + + GG ++ Q + L++ Sbjct: 63 LEKIDPKNKNVQALVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQSYDPQIRALKK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH RG L + N+++LV+DEAD ML+MGF I+ I P +RQT+ Sbjct: 123 GVQIVVGTPGRVMDHMRRGTLKLENLKMLVLDEADEMLNMGFKDDIEEILEKTPESRQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +FSATM E+ +++ + +NP+ ++V + + + I+ +V K+ +Q +++ Sbjct: 183 MFSATMAREIMNIAKTYQKNPEVVKVVSEELSNKKIDQYYVEV-----KRQDRVQAMIRC 237 Query: 242 QDTM--KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D M + I+F N K+ V L L+++G+ +HG++ Q R +++++F+ + ++ Sbjct: 238 IDMMGLTSSIVFTNTKREVDELVSKLQEEGYVTEGLHGDLKQAQRDRVMNSFRRKNVNIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V VFN+D+P ENY+HRIGRTGRAG G + T V +D+ I Sbjct: 298 VATDIAARGIDVSNVEAVFNYDIPLNEENYVHRIGRTGRAGMTGLSITFVFGKDMFRIRR 357 Query: 360 IEKLIEKKVDWL 371 IE + K+ + Sbjct: 358 IEDYTKTKMSKM 369 >gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus str. Jelinkova 176] gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus str. Jelinkova 176] Length = 538 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G++ + V + GG + Q K L+ Sbjct: 61 N---KIRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F++NP+ +++ T +E +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V + L+ +GF IHG++DQ R++++ +FK + ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI +V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940] gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940] Length = 678 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/385 (38%), Positives = 237/385 (61%), Gaps = 13/385 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL +V AV G+ +P+PIQ +TIP++++ DV G+AQTGTGKTA+F LP+L+ Sbjct: 56 FATLGLPEEVQQAVAKVGFTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 115 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ VR P+ L+L PTRELA QVAD+F+ + + + V + GG + Q L R Sbjct: 116 VDP---EVRHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRR 172 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++ + LV+DEAD ML+MGF ++ I P +Q Sbjct: 173 GAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVA 232 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240 LFSATM + ++++S+ +L +P + V + T + I ++ T + +K ++L+ Sbjct: 233 LFSATMPNSIRRLSKQYLNDPAEVTVKSERRTNDNITQRYLLT--PHRQKMDAFTRILEV 290 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + I+FC K + SL G++ AI+G+I Q+ R + + K+G + ++ Sbjct: 291 IEYDAI---IVFCRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDIL 347 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+PN E+Y+HRIGRTGRAGR G+A V + + + + Sbjct: 348 VATDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRS 407 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384 IE++ +++ + DL S + EK Sbjct: 408 IERVTNARLEEM--DLPSADAVNEK 430 >gi|254249566|ref|ZP_04942886.1| Helicase [Burkholderia cenocepacia PC184] gi|124876067|gb|EAY66057.1| Helicase [Burkholderia cenocepacia PC184] Length = 505 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 224/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + Y PTP+Q K IP+VL DV AQTGTGKTA F LP+L Sbjct: 23 MSFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLL 82 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F +YGK +L GG+ Q K Sbjct: 83 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 142 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 143 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKR 202 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++K++ L++P I V+ P++TA I+ V K L L Sbjct: 203 QTLLFSATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPV--DKRNKPDLFMHL 260 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +Q+ ++ ++F + V L LEK G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 261 V-AQNRWEHALVFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQM 319 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 320 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 379 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 380 AIEALIRQ 387 >gi|325279879|ref|YP_004252421.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311688|gb|ADY32241.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM 20712] Length = 374 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 152/370 (41%), Positives = 231/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + ++ A+ + GY +PTPIQ + IP+ L R D+ G AQTGTGKTASF +P++ Sbjct: 1 MTFKELNIIQPILKAIEEKGYNRPTPIQQQAIPVALSRKDILGCAQTGTGKTASFAIPII 60 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + + + LIL PTRELA Q+++ ++Y + + ++ GG+ Q Sbjct: 61 QLLQADPIITKRKGVKALILTPTRELALQISECLDEYARYTPVRHGVMFGGVNQRPQVTM 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G D+L+ TPGR+LD ++G L ++ ++ V+DEADRMLDMGFI I+ I +P + Sbjct: 121 LQKGIDILVATPGRLLDLMSQGFLSLDQVKYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM D + ++ L+NP +I + S T + IE FV + + ++K LL L Sbjct: 181 QTLFFSATMPDSIVTLASALLKNPVKITITPESPTVDAIEQ-FV-YFVEKAEKGRLLISL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + ++ ++F K N + L K G AIHGN Q +R L NFK G ++ Sbjct: 239 LRKAEN-QSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G AFT ++E+ K +D Sbjct: 298 MVATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGTAFTFCSQEERKLVD 357 Query: 359 AIEKLIEKKV 368 I+KL KK+ Sbjct: 358 NIQKLTGKKL 367 >gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2] gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2] Length = 574 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 231/369 (62%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DLGLS ++ + + GY P+PIQ + IP++L+ D+ G+AQTGTGKTA+F LP+L Sbjct: 5 IKFSDLGLSAPILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQTGTGKTAAFALPIL 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ + + P+ L+L PTRELA QVA+ F+ + + L V + GG + Q + L Sbjct: 65 SKID---LKQKDPQVLVLAPTRELAIQVAEAFQTFSRGVKGLHVLPIYGGSEYGTQIRAL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH +G L ++ ++++++DEAD ML MGFI ++ I P TRQ Sbjct: 122 KRGVHVVVGTPGRVMDHIKKGTLKLDTLKVMILDEADEMLRMGFIDDVEWILKHTPDTRQ 181 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM E+ +++ +LQ+P + + ++TA IE + + K L ++L Sbjct: 182 IALFSATMPKEVHRIANTYLQDPTEVIIKQKAATASLIEQKYWLVSGLH--KLDALTRIL 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ T IIF K V L LE +G++ A++G++ Q R + + K+G + ++ Sbjct: 240 EAE-TFDGIIIFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDIL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+ ARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A VA + + + + Sbjct: 299 IATDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAPRERRLLRS 358 Query: 360 IEKLIEKKV 368 IE +KK+ Sbjct: 359 IEASTKKKI 367 >gi|332532397|ref|ZP_08408275.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis ANT/505] gi|332038040|gb|EGI74487.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis ANT/505] Length = 592 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 140/331 (42%), Positives = 213/331 (64%), Gaps = 8/331 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY P+ IQ + IPL+L+R DV G+AQTGTGKTA+F LP+L ++ V+ P+ L+L Sbjct: 2 GYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNIDPS---VKQPQILVLT 58 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA+ FE+Y K+ + V L GG + Q L RGA V++ TPGR++DH N Sbjct: 59 PTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRRGAQVIVATPGRLIDHIN 118 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG + + ++ LV+DEAD ML MGFI +++I P +QT LFSATM ++Q +S + Sbjct: 119 RGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLFSATMPKQIQNISSKY 178 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 + NP+++ ++ +ST ++E F A K A+++ L Q + I+F + + Sbjct: 179 MNNPEQVHISARNSTVSSVEQVF--WNASVHKNKAIVRFLEAEQ--YEGAIVFVRTRNDT 234 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 V L LE++GFS ++G+++Q++R + + K G + +++A+D+AARGLD+ + V Sbjct: 235 VQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNIVIATDVAARGLDVDRLSLVI 294 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 N+D+P +E Y+HRIGRTGRAGR GKA V Sbjct: 295 NYDIPQDSEAYVHRIGRTGRAGRTGKAILFV 325 >gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159] gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159] Length = 534 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 221/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA LGLSP ++ A+ D G+ +P P+Q + IP++L D A TGTGKTA+F LP+L Sbjct: 14 FAALGLSPALLAALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALPILQG 73 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ G P+ L+L PTRELA QVA+ + G+ + V L GG P E Q + L Sbjct: 74 LVPYGHG----PQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLRALRH 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV++ TPGRI+DH R L ++ + ++++DEAD MLDMGFI ++ I VP RQT Sbjct: 130 PVDVIVGTPGRIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRERQTA 189 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++++++ +L+ P I ++ T +I V A ++K AL + L Sbjct: 190 LFSATIPPRIRQLTQRYLRAPVTIAIHPERVTVPSIAQT-VYEVAAHAKLEALSRIL--D 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K L H L+ G++ AIHG++ Q R + + F+ G + L++A Sbjct: 247 YEAPTSAIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVDLLIA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDIP V HV NFD+P+ E+Y+HRIGRTGRAG G A TL+ + + IE Sbjct: 307 TDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTGRAGATGTAITLIEPRERWLLRTIE 366 Query: 362 KLIEKKV 368 + I +++ Sbjct: 367 RAIGQRL 373 >gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 635 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 230/367 (62%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 + P+ L+L PTRELA QVA+ F Y K N V + GG + Q L+R Sbjct: 68 VTSQTT----PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L +++++ LV+DEAD ML MGFI I+ I P RQ Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L++P + + + +T E+IE FV +Q++K AL++ +L+ Sbjct: 184 LFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQV-SQHNKLEALVR-VLEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 242 ENT-EGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P AE Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360 Query: 362 KLIEKKV 368 + ++ Sbjct: 361 RSTNSRI 367 >gi|88860375|ref|ZP_01135013.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas tunicata D2] gi|88817573|gb|EAR27390.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas tunicata D2] Length = 609 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 142/356 (39%), Positives = 226/356 (63%), Gaps = 9/356 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LSP+++ +V GYV P+ IQ + IP +L DV G+AQTGTGKTA+F LP+L Sbjct: 7 FSSLNLSPEILKSVEKLGYVTPSEIQAQCIPFLLNGKDVLGLAQTGTGKTAAFALPLLNN 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ A V+ P+ L+L PTRELA QVA+ FE+Y + + V L GG + Q L Sbjct: 67 ID---ATVKHPQVLVLAPTRELAIQVAEAFEQYAQFIKGINVLALYGGQSYNVQLSGLRN 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH NRG + ++++ LV+DEAD ML MGFI ++ I + P +QT Sbjct: 124 GPQVIVATPGRLIDHLNRGTIKFDHLKALVLDEADEMLRMGFIEDVETIMAKTPKQKQTC 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++QK+ +L++ + + ++ +ST E++E + + + K + + LQ+ Sbjct: 184 LFSATMPQQIQKICSTYLEDAEHVHISARNSTVESVEQVY---WQANTHKNNAIIRFLQA 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T I+F + + V + LE+ GFS ++G+++Q++R + + K G + +++A Sbjct: 241 E-TYDGAIVFVRTRNDTVEIAELLEQAGFSAAPLNGDMNQQARERTVERLKNGLLDIVIA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +D+AARGLD+ + V N+D+P +E Y+HRIGRTGRAGR GKA V K + +H+ Sbjct: 300 TDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFV-KHNERHL 354 >gi|152995916|ref|YP_001340751.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp. MWYL1] gi|150836840|gb|ABR70816.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1] Length = 398 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 162/403 (40%), Positives = 236/403 (58%), Gaps = 12/403 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS +V A+ + GY PTP+Q + IP++L D+ AQTGTGKTA+FVLP+L Sbjct: 1 MPFAKLGLSSPLVQAITELGYKTPTPVQKQAIPIILSGKDLIATAQTGTGKTAAFVLPLL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 K G R + R LIL PTRELA QV + +Y K+ LT + GG+ EAQ ++L Sbjct: 61 ERFTKAGTLRGKRIRVLILVPTRELAVQVEASVAQYAKHTKLTSMAVYGGVDTEAQKERL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD ++ L + ++++V+DEADRM+DMGF+ I I +P RQ Sbjct: 121 IEGVDILVATPGRLLDLAHQRALHFDELKVMVLDEADRMVDMGFVGDINKIMERLPENRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQN-----PKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 LLFSATMTD+++ ++ +F + I ++ A I+ + K AL Sbjct: 181 NLLFSATMTDDVRALAFDFSDSKMTDLAAEISISPNVRAAANIKQWLITV--DKDTKSAL 238 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ Q +IF +K L L K+G IHG+ Q R KIL+ FK G Sbjct: 239 LSHLINEQK-WDQALIFIEKKHGAAKLVDQLAKRGIVADCIHGDRSQAMREKILAQFKSG 297 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++ +VA+ +AARGLDI ++ V N+D+P + E YIHRIGRTGRAG G+A + VA D Sbjct: 298 ELKYLVATGVAARGLDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGALGEAISFVAMGDF 357 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397 K++ AIE ++ +D +++ P + + ++ N+ RK N Sbjct: 358 KNLCAIESRLKHIID--RKEIAGF-PVRKVVPVSILNYVRKAN 397 >gi|153834507|ref|ZP_01987174.1| RhlE [Vibrio harveyi HY01] gi|148869093|gb|EDL68132.1| RhlE [Vibrio harveyi HY01] Length = 411 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 151/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV GY KPT IQ K IP+VL+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R +IL PTRELA QV + E YGKN L + GG+ + Q + L Sbjct: 61 EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR++D + + + + +E+LV+DEAD+MLDMGFI I I +P Q Sbjct: 121 IDGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT+++ ++ +++N + +P+ I + S++ I+ T K +LL +L Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D ++F K L LEK+G A H +QR R +++ FK G IQ + Sbjct: 239 NEND-WSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118] gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118] Length = 537 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 71 ADLHQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 246 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR+G A V + + + Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|297538310|ref|YP_003674079.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp. 301] gi|297257657|gb|ADI29502.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301] Length = 630 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/374 (39%), Positives = 230/374 (61%), Gaps = 11/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F L L ++ A+ ++GY PT IQ + IP+V HD+ AQTGTGKTA+F+LP L Sbjct: 23 LSFESLNLDNALLRAIEESGYTTPTAIQSQAIPVVTAGHDLMASAQTGTGKTAAFMLPAL 82 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + R PR L+L PTRELA QV + KYGK ++GG+P+ QNK L Sbjct: 83 NLLATPHELKSRGPRILVLVPTRELATQVNEAARKYGKFIRARTVSIVGGMPYPLQNKLL 142 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+LDH RG++ ++ +++L++DEADRMLDMGF+P ++ I + RQ Sbjct: 143 SQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQ 202 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY----SKKCALL 235 TLLFSAT+ ++ +V++ L+NPK I+V + +H + Y + K LL Sbjct: 203 TLLFSATLDGDIARVAKQILKNPKTIQV-----AGQKEKHANIEQRLHYVDDMTHKNKLL 257 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + LL + + + IIF + K++ L L G A+HG++ Q +R + L+ ++G Sbjct: 258 EHLLIAPE-VNQVIIFTSTKRHCDVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRQGD 316 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARG+DI + HV N+D+P AE+Y+HRIGRTGRAG+ G A + + D Sbjct: 317 VKVLVATDVAARGIDINGISHVINYDLPKFAEDYVHRIGRTGRAGKTGIAISFASNMDRH 376 Query: 356 HIDAIEKLIEKKVD 369 + IE+ +++ Sbjct: 377 ILRKIEQFTGNRME 390 >gi|83950175|ref|ZP_00958908.1| putative ATP-dependent RNA helicase protein [Roseovarius nubinhibens ISM] gi|83838074|gb|EAP77370.1| putative ATP-dependent RNA helicase protein [Roseovarius nubinhibens ISM] Length = 431 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 232/378 (61%), Gaps = 9/378 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL+P + A+ AG+ +PTPIQ + IPL L+ HD+ G+AQTGTGKT +F LP++ Sbjct: 3 DFDMLGLAPALNEALTRAGFSEPTPIQNQAIPLALEGHDILGLAQTGTGKTLAFGLPLIN 62 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L E G+ + + LIL PTREL Q+AD+ L VA ++GG Q L Sbjct: 63 HLLAEPGKPAPKTAKALILAPTRELVNQIADSLRNLTDGTRLRVATVVGGQSINRQITFL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR++D +R + + ++ LV+DEAD+MLD+GFI ++ I + RQ Sbjct: 123 ARGTDILVATPGRLIDLMDRRAVDLGSVRHLVLDEADQMLDLGFIHALRKIAPRLGTPRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQQ 237 T+LFSATM +++++S +L+NP++++V+ P A+ I F+ A+ SK L++ Sbjct: 183 TMLFSATMPKQMEELSRAYLENPRKVQVSPPGKAADKITQSVHFLEKPAKPSK----LRE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L S+D ++F K L L G++ +IHGN Q R + + F+ G I Sbjct: 239 IL-SRDMDALTLVFSRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEIN 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DIP V +V N+D+P+ +NY+HRIGRT RAGR G+A + E+ + Sbjct: 298 VLVATDVAARGIDIPGVAYVINYDLPDVPDNYVHRIGRTARAGREGEAIAFCSSEEADLL 357 Query: 358 DAIEKLIEKKVDWLNGDL 375 I++L++ + +G L Sbjct: 358 RQIQRLMKIDIPVASGTL 375 >gi|295085349|emb|CBK66872.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens XB1A] Length = 374 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 153/371 (41%), Positives = 232/371 (62%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L ++ ++ A+ + GY PTPIQ K IP L + D+ G AQTGTGKTASF +P++ Sbjct: 1 MTFKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+ K AR + + LIL PTRELA Q+++ + Y K+ + ++ GG+ Q Sbjct: 61 QHLQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD ++G + ++ I+ V+DEADRMLDMGFI I+ I +P + Sbjct: 121 LRKGIDILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM D + ++++ L+NP +I + SST ++I+ V + + +K LL + Sbjct: 181 QTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQ--VVYFVEKKEKSQLLISI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L S+ ++ +IF K N + L K G AIHGN Q +R L NFK G ++ Sbjct: 239 L-SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+A+RG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K ++ Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVN 357 Query: 359 AIEKLIEKKVD 369 I+KL KK++ Sbjct: 358 DIQKLTGKKLN 368 >gi|119477499|ref|ZP_01617690.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] gi|119449425|gb|EAW30664.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] Length = 608 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 149/361 (41%), Positives = 221/361 (61%), Gaps = 6/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS V AV GY +P+PIQ TIP +L D+ G+AQTGTGKTA+F LP+L+ Sbjct: 9 FTELALSAPVQKAVSIVGYEQPSPIQAATIPHLLNGDDLLGVAQTGTGKTAAFALPLLSR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L+L PTRELA QVA+ F+ Y V + GG Q ++L+R Sbjct: 69 ID---LKKNSPQVLVLAPTRELAIQVAEAFKTYASQMKGFHVLPIYGGQDMSGQLRQLKR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L ++ + LV+DEAD ML MGFI ++ I P RQ Sbjct: 126 GAHVVVGTPGRVMDHLRRGSLNLDGLTGLVLDEADEMLRMGFIDDVEWILEHTPPKRQVA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++KV++ +L +PK + + T ++TA IE ++ + +K + ++L++ Sbjct: 186 LFSATMPKPIRKVADRYLSDPKEVRIATDATTAPRIEQRYLIVNG-FDRKLDAITRILEA 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D IIF K L LE +G+S A++G+++Q R + ++ K+ + ++VA Sbjct: 245 DD-FDAMIIFVRTKTATAELAEKLEARGYSASALNGDMNQALRERTINRLKKKQLDIIVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ V HV NFD+P E Y+HRIGRTGRAGR GKA VA + + + IE Sbjct: 304 TDVAARGIDVERVSHVLNFDIPYDPEAYVHRIGRTGRAGREGKAILFVAPREKRLLHTIE 363 Query: 362 K 362 K Sbjct: 364 K 364 >gi|262191718|ref|ZP_06049893.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93] gi|262032413|gb|EEY50976.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93] Length = 397 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRIRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 NEQ-KWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|269961058|ref|ZP_06175427.1| ATP-dependent RNA helicase RhlE [Vibrio harveyi 1DA3] gi|269834277|gb|EEZ88367.1| ATP-dependent RNA helicase RhlE [Vibrio harveyi 1DA3] Length = 411 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 151/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + AV GY KPT IQ K IP+VL+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R +IL PTRELA QV + E YGKN L + GG+ + Q + L Sbjct: 61 EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR++D + + + + +E+LV+DEAD+MLDMGFI I I +P Q Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT+++ ++ +++N + +P+ I + S++ I+ T K +LL +L Sbjct: 181 SLLFSATLSNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D ++F K L LEK+G A H +QR R +++ FK G IQ + Sbjct: 239 NEND-WSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101] Length = 537 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G +P+++ A+ GY +P+PIQ IP +L D+ G AQTGTGKTA+F LPML Sbjct: 80 FASFGFAPELLDALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPMLAA 139 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + R P+ L+L PTRELA QVAD F+ Y N +L V L GG F Q +L+R Sbjct: 140 LD---GQQRTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLKR 196 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH +G L ++ + LV+DEAD ML MGFI ++ + +P RQ + Sbjct: 197 GVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQVV 256 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S +L +P + + T + + I F+ +K L ++L+S Sbjct: 257 LFSATMPPEIRRISHKYLNDPAEVTIKTKGADSSRIRQRFITVNG--PQKLEALTRVLES 314 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T + IIF K V + +LE +G+ V ++G++ Q R + + K GT+ ++VA Sbjct: 315 E-TKEGVIIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVA 373 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E Y+HR+GRTGRAGR G A V + + + +E Sbjct: 374 TDVAARGLDVDRITLVVNYDIPFDSEAYVHRVGRTGRAGRSGDAILFVTPRERRFLGGLE 433 Query: 362 KLIEKKVD 369 + + + ++ Sbjct: 434 RAVGRPIE 441 >gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] Length = 449 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 225/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ G+ PTPIQ + IP L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV + YG++ L A+ GG+ Q K Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D ++ ++ L++P IEV+ ++ A+++ V +K L L Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ + + ++F +K+V L L++QG + +IHG+ Q +R++ L FK G + L Sbjct: 239 LQA-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIETLI 363 >gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016] gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016] Length = 449 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 225/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ G+ PTPIQ + IP L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV + YG++ L A+ GG+ Q K Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D ++ ++ L++P IEV+ ++ A+++ V +K L L Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ + + ++F +K+V L L++QG + +IHG+ Q +R++ L FK G + L Sbjct: 239 LQA-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIETLI 363 >gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 648 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 27 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 87 ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 143 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 144 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 203 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 204 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 261 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 262 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 318 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR+G A V + + + Sbjct: 319 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 378 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 379 IERATRQPIEEMQ 391 >gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17] gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17] Length = 375 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 157/370 (42%), Positives = 229/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L +S ++ A+ Y PTPIQ K IP+ L+ D+ GIAQTGTGKTA+F +P++ Sbjct: 1 MTFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPII 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K R R + LIL PTRELA Q+ + F+ Y K L ++ GG+ Q K+ Sbjct: 61 QQLAKSADDNRRRDIKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKE 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG D+LI TPGR+LD ++ + + +I V+DEADRMLDMGFI I+ + L+P R Sbjct: 121 LERGVDILIATPGRLLDLISQHIITLEHICHFVLDEADRMLDMGFIHDIKKLIPLLPKRR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM + + K+S++ L P R+EV SS +TIE + + +K LL + Sbjct: 181 QTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLY--FVEKPQKTDLLVSV 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ D ++ ++F K + L+ + AIHGN Q +R + L+NFK G ++ Sbjct: 239 LKN-DGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ V N+D+P+ AE Y+HRIGRTGRAG G A T +++ + Sbjct: 298 IVATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQDERPMVR 357 Query: 359 AIEKLIEKKV 368 I+KL KK+ Sbjct: 358 DIQKLTGKKL 367 >gi|168701792|ref|ZP_02734069.1| RNA helicase DeaD [Gemmata obscuriglobus UQM 2246] Length = 572 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 152/369 (41%), Positives = 221/369 (59%), Gaps = 3/369 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++V + GY +PTPIQ + IP +++ HD+ G A TGTGKTA+F LP+L Sbjct: 23 FAKLGLDSRLVERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFSLPILHG 82 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + AR + P +LIL PTRELA QVA++ KYG+ + V + GG P + Q + L+RG Sbjct: 83 LARSTARTK-PTSLILVPTRELAMQVAESVAKYGQPLGVRVLPIYGGAPMDQQIRALDRG 141 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH R L ++ I ++V+DEAD MLDMGF I+ I + P RQT L Sbjct: 142 IDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPTERQTAL 201 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM ++ ++ L+N I V P E + A Q K A L ++L Sbjct: 202 FSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAALGRVLDG 261 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + +IFC + V L +L +G+ A+HG + Q +R +++ F+ G L+VA Sbjct: 262 E-SPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQANLLVA 320 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV NF +P ENY+HRIGR GRAGR G A T+ + + AIE Sbjct: 321 TDVAARGLDVEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGALRAIE 380 Query: 362 KLIEKKVDW 370 + +++++ Sbjct: 381 RHTGQRIEY 389 >gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 648 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 27 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 87 ADLHQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 143 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 144 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPAQRQVA 203 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 204 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 261 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 262 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 318 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR+G A V + + + Sbjct: 319 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 378 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 379 IERATRQPIEEMQ 391 >gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 465 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 231/366 (63%), Gaps = 7/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ +V+ A+ D G+ +P+PIQ IP+VL+ DV G AQTGTGKTA+F +P++ Sbjct: 20 FESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV-- 77 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E+ R+ + ++L PTRELA QVA K K + + GG Q + L++G Sbjct: 78 -ERVSTEPRV-QAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQG 135 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH +RG L + ++ ++V+DEAD MLDMGFI I+ I P RQT+L Sbjct: 136 VQIVIGTPGRVLDHIHRGTLSLGDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTML 195 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT +E+++++ ++++P+ I VN T I+ + K L +++ S+ Sbjct: 196 FSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLER--NKLDSLCRIVDSE 253 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++ GIIFC K+ V +L +L +G+ +HG++ Q R +++ F++ I+L+VA+ Sbjct: 254 D-IQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVAT 312 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ DV HV N+DVP E+Y+HRIGRTGRAG+ G A TLV + K + IE+ Sbjct: 313 DVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIER 372 Query: 363 LIEKKV 368 I++K+ Sbjct: 373 EIKQKI 378 >gi|104773512|ref|YP_618492.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 483 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 148/385 (38%), Positives = 234/385 (60%), Gaps = 15/385 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+ ++ A+ +G+ + TPIQ +TIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + + + +++EPTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 61 QKLDLDKQEQAI-QAIVIEPTRELAIQTQEELFRLGRDEKAKVQVVYGGADIGRQIRDLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++L+ TPGR+LDH R + ++ ++ +V+DEAD MLDMGFI I++I + QT Sbjct: 120 KVPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQL 238 LLFSATM +Q + E F+ +P+ +++ TA+ I+ FV ++ C L+ Sbjct: 180 LLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLID-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ D ++F K+ V L L +G++ IHG++ Q RM++L FKEG + + Sbjct: 238 VENPDL---AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG+ G + T V +I ++ Sbjct: 295 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMR 354 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383 IE L +KK +S L PP + Sbjct: 355 TIEDLTKKK-------MSPLRPPTD 372 >gi|260596208|ref|YP_003208779.1| ATP-dependent RNA helicase DeaD [Cronobacter turicensis z3032] gi|260215385|emb|CBA27415.1| Cold-shock DEAD box protein A [Cronobacter turicensis z3032] Length = 638 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 235/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FTDLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 68 IDD---TLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N++ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + Y +K L + L+S Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGM--RKNEALVRFLES 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens MI-1] Length = 482 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 225/368 (61%), Gaps = 10/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS V ++ G+ + TPIQ K IP+ L D+ G A TGTGKTA+F +PM+ Sbjct: 4 FYELGLSKSVSESIKLMGFEEATPIQEKAIPIALSGGDLIGQAHTGTGKTAAFGIPMVER 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + ++ LI+ PTRELA QVA+ + G+ + + GG Q + L++ Sbjct: 64 FSRQQDTIQ---GLIITPTRELAVQVAEEMNRIGQVKGIHTLPVYGGQDINRQIRALKKK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH R + +N + ++V+DEAD ML+MGFI I+ I VP RQTLL Sbjct: 121 PHIIVGTPGRLMDHMKRKTIRLNELTMVVLDEADEMLNMGFIEDIEEILQQVPEERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL--Q 240 FSAT++ +Q+++ FL+NP+ I + T +I+ +V Q +K +L L Q Sbjct: 181 FSATISKPIQELARRFLKNPEFIAIKAKEVTVPSIDQSYVEV--QEKQKFEVLSTFLDIQ 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S D I+F K+ V L +L K+G+S IHG++ Q R +L FKEG I+++V Sbjct: 239 SPDL---AIVFGRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVLV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G+A T V ++ H+ I Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGEAITFVTPREMNHLRLI 355 Query: 361 EKLIEKKV 368 E++ + K+ Sbjct: 356 ERITKHKI 363 >gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22] gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22] Length = 374 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 153/371 (41%), Positives = 231/371 (62%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L ++ ++ A+ + GY PTPIQ K IP L + D+ G AQTGTGKTASF +P++ Sbjct: 1 MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+K AR + + LIL PTRELA Q+++ + Y K+ + ++ GG+ Q Sbjct: 61 QHLQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD +G + ++ I+ V+DEADRMLDMGFI I+ I +P + Sbjct: 121 LRKGIDILVATPGRLLDLMTQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM D + ++++ L+NP +I + SST ++I+ V + + +K LL + Sbjct: 181 QTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQ--VVYFVEKKEKSQLLISI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L S+ ++ +IF K N + L K G AIHGN Q +R L NFK G ++ Sbjct: 239 L-SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+A+RG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K ++ Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVN 357 Query: 359 AIEKLIEKKVD 369 I+KL KK++ Sbjct: 358 DIQKLTGKKLN 368 >gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505] gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505] Length = 865 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 152/394 (38%), Positives = 234/394 (59%), Gaps = 16/394 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ AV D G+V PT IQ + IP++L DV G+AQTGTGKTA+F LP+L Sbjct: 164 FADLGLPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDA 223 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ +R + + L+L PTRELA Q A+ + ++ L V + GG P+ Q L+ Sbjct: 224 VD---SRDNVVQALVLAPTRELALQSAEAITDMAARSRGLEVVAVYGGAPYGPQIGALKG 280 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D ++G L ++++ V+DEAD ML MGF ++ I +P R+T Sbjct: 281 GAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPADRRTA 340 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +Q V+ L P ++EV+ P+ST T+ + + K + ++L Sbjct: 341 LFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVV--PFRHKIGAVSRVLAV 398 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + I+F K ++ L +G AI G++ QR R +++ + GT+ ++VA Sbjct: 399 TDA-EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVA 457 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V NFDVP AE Y+HRIGRTGRAGRHG+A T + ++ + IE Sbjct: 458 TDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIE 517 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 +L +++ + +L P D+++H ARK Sbjct: 518 RLTGSRLEEI-----TLPSP---ADVSEHR-ARK 542 >gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895181|gb|EFG74896.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 566 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 219/361 (60%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P V+ A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +P+L+ Sbjct: 15 FADLQIHPSVLRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + + L+L PTRELA QVA+ F +YG + + V + GG + Q L R Sbjct: 75 IDVAS---KATQALVLAPTRELALQVAEAFSRYGAHLPKVNVLPIYGGSSYTVQLAGLRR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L +++++ LV+DEAD ML MGF + I S P +Q Sbjct: 132 GAQVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++ +L +P + ++TAE I ++ +K L ++L+ Sbjct: 192 LFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAG--PRKMDALTRVLEV 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI+G+I Q R + ++ K+G I ++VA Sbjct: 250 E-PFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + + AIE Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAIE 368 Query: 362 K 362 K Sbjct: 369 K 369 >gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium 104] gi|118163544|gb|ABK64441.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium 104] Length = 566 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 219/361 (60%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P V+ A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +P+L+ Sbjct: 15 FADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + L+L PTRELA QVA+ F +YG + + V + GG + Q L+R Sbjct: 75 IDVASTATQ---ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L +++++ LV+DEAD ML MGF + I S P +Q Sbjct: 132 GAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++ +L +P + ++TAE I ++ +K L ++L+ Sbjct: 192 LFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAG--PRKMDALTRVLEV 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI+G+I Q R + ++ K+G I ++VA Sbjct: 250 E-PFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + + AIE Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIE 368 Query: 362 K 362 K Sbjct: 369 K 369 >gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7] gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7] Length = 447 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 151/366 (41%), Positives = 225/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ G PTPIQ + IP L+ D+ AQTGTGKTA+F LP+L Sbjct: 1 MTFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV + YG++ L A+ GG+ Q K Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAVQFARLQALVLDEADRMLDLGFARELDELFAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D ++ ++ L++P IEV+ ++ A+++ V +K L L Sbjct: 181 QTLLFSATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ + + ++F +K+V L L++QG + +IHG+ Q +R++ L FK G + L Sbjct: 239 LQA-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLA 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIETLI 363 >gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421] gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421] Length = 384 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 161/373 (43%), Positives = 221/373 (59%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADL L P +V AV G+ +PTPIQ IP L DV A TG+GKTA+F+LP+L Sbjct: 1 MTFADLQLHPDLVRAVEQLGFTQPTPIQTLAIPPALAGRDVLACAMTGSGKTAAFLLPIL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++ + R+ R L+L PTRELA Q+ + + + L A +IGG+ E Q + Sbjct: 61 QQLIAQPRSTTR---ALVLTPTRELAGQIEMHLGQLARYSALRGASIIGGVSPEPQARAF 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G +VLI TPGR+LDHF++ + N+EILV+DEADRML+MGF+P I+ I RQ Sbjct: 118 HKGVEVLIGTPGRLLDHFDQPYARLANLEILVLDEADRMLEMGFLPDIRRILRHTGHRRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSATM + K++ L+NP + ++ A I H V AQ K LL+ L Sbjct: 178 TLFFSATMPGPIAKLATEILRNPVTLNQERKAAPAVGITHS-VYPVAQNLKSKFLLE--L 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ M+ I+F K L L K S IHGN Q R + L+ FK G +++ Sbjct: 235 LEREGMRQVIVFTRTKHRANRLSEYLSKARISCERIHGNRSQGQRTEALAGFKSGKYRVL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RG+DI +GHV NFDVP AE+YIHR+GRT RA R G AFT V+ E+ + A Sbjct: 295 VATDIASRGIDIEALGHVVNFDVPQAAEDYIHRVGRTARAERTGDAFTFVSPEEEDQLRA 354 Query: 360 IEKLIEKKVDWLN 372 IE+ I K++ L Sbjct: 355 IERAIGKRLPRLT 367 >gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 648 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 27 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 87 ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 143 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 144 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA 203 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 204 LFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 261 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 262 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 318 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR+G A V + + + Sbjct: 319 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 378 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 379 IERATRQPIEEMQ 391 >gi|295425677|ref|ZP_06818364.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664] gi|295064693|gb|EFG55614.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664] Length = 493 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 154/396 (38%), Positives = 243/396 (61%), Gaps = 16/396 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+ ++ A+ +G+ + TPIQ +TIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFLELGLNEDLLKAIKRSGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+K ++ +I+EPTRELA Q + + G++ + V ++ GG Q + L+ Sbjct: 61 QNLDKHEKTIQ---AVIIEPTRELAIQTQEELFRLGRDEHARVQVVYGGADIGRQIRSLK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +L+ TPGR+LDH RG + ++ + +V+DEAD MLDMGFI I++I V +Q Sbjct: 118 HHVPAILVGTPGRLLDHLKRGTIDLSKTKTVVLDEADEMLDMGFIQDIESILKYVGERKQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + ++ E F+ +P+ +++ TA+ I+ FV A+ S+K ++ +L+ Sbjct: 178 TLLFSATMPKPILQIGEKFMHDPEVVKIKAKELTADLIDQYFVR--AKESEKFDIMCRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+ G ++++ Sbjct: 236 DVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKQFRAGKLEIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEISYMQT 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE+L +KK +S L PP + D A H ++ Sbjct: 355 IEQLTKKK-------MSPLRPPTD--DQALHGQLKQ 381 >gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14] gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14] Length = 449 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 225/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ G+ PTPIQ + IP L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV + YG++ L A+ GG+ Q K Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D ++ ++ L++P IEV+ ++ A+++ V +K L L Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ + + ++F +K+V L L++QG + +IHG+ Q +R++ L FK G + L Sbjct: 239 LQA-NRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIETLI 363 >gi|312114880|ref|YP_004012476.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100] gi|311220009|gb|ADP71377.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 405 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 150/374 (40%), Positives = 222/374 (59%), Gaps = 9/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL+ ++ A+ D YV+PTPIQ K IP +LQ D+ G+AQTGTGKTA+F LP+L + Sbjct: 6 FEALGLAKPLLRALADENYVEPTPIQEKAIPHLLQGRDLLGLAQTGTGKTAAFALPLLQL 65 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + R R LIL PTREL Q+A +F+ YG + LT +++GG+ Q K L Sbjct: 66 LSERQDSPKPRTARALILVPTRELGLQIAASFKSYGHHLKLTSTVIMGGVSIGPQAKALS 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D L+ TPGR+LDH +G + + VIDEADRMLDMGFI ++ + ++P RQ+ Sbjct: 126 RGVDFLVATPGRLLDHLGQGTVDLGQTSYFVIDEADRMLDMGFIRDVRKLMKVMPRKRQS 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQL 238 +LFSATM E+ ++E+ L++P I + + E I+ V T K +L L Sbjct: 186 ILFSATMPKEIATLAEDILKDPVHITIPAKTVAVERIDQRVHLVTT----GNKPTMLAGL 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L Q I+F K++ + L + G AIHGN Q +R K L N ++G ++ Sbjct: 242 L-DQPEFDRVIVFTRTKRSANRVAERLLQGGVPTEAIHGNKSQAARQKALENLRQGKARV 300 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+ ARG+D+ + HV N+++PN ENY+HRIGRT RAG G A + + + Sbjct: 301 LVATDILARGIDVDSISHVINYELPNDPENYVHRIGRTARAGSDGIAISFCDLSERASLR 360 Query: 359 AIEKLIEKKVDWLN 372 IE+ + + + +N Sbjct: 361 NIERFLGRSLTQVN 374 >gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum DSM 4028] Length = 545 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 222/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL +++ A+ + GY PT IQ + IP++L D+ AQTGTGKT +F LP++ Sbjct: 1 MSFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIV 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL R PR LIL PTRELA QV ++ + Y + +L + GG+ E Q +LE Sbjct: 61 QILGLTRGNGHHPRALILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIARLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD ++ L + +IE LV DEADRMLD+GF I I L+P R+T Sbjct: 121 RGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239 +LFSAT T +++ ++ L P+ IE+ ++ AE ++ + K LL L+ Sbjct: 181 MLFSATYTPQIKALAAKMLDKPEYIEITPDTAAAEAVQQKV--HHVNKDNKLPLLLHLIE 238 Query: 240 -QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q QD + ++F + L L G SV A+HG+ Q R + L FK+G I + Sbjct: 239 KQKQDRI---LVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHI 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI ++ V N+D+PN E+Y+HRIGRTGRAG G A +LV+ E+ + Sbjct: 296 LVATDVAARGLDISNLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLL 355 Query: 359 AIEKLIEKKV 368 AIE L+ ++ Sbjct: 356 AIEDLLRHQI 365 >gi|226330865|ref|ZP_03806383.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198] gi|225201660|gb|EEG84014.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198] Length = 475 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 160/407 (39%), Positives = 241/407 (59%), Gaps = 10/407 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGLS ++ A+ + GY PTPIQ + I +L DV AQTGTGKTA+F LP+L Sbjct: 3 DFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILE 62 Query: 62 ILEKG--RARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + + R P + LIL PTRELAAQ+A+N + Y + + ++ GG+ Q K Sbjct: 63 KLSQSATKTKGRQPVKALILTPTRELAAQIAENVKAYSRYIPIRSLVVFGGVSINPQMMK 122 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G DVLI TPGR+LD ++ + ++ +E+LV+DEADRMLDMGFI I+ + + +P R Sbjct: 123 LRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKR 182 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + E+ ++ + L NP I V +S AE+++ +K LL L Sbjct: 183 QNLLFSATFSKEITGLANSLLNNPVSISVAPKNSAAESVDQYV--HLVDKKRKTELLSHL 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + +IF K L L G AIHGN Q +R + L++FK+G ++ Sbjct: 241 I-GLENWPQVLIFTRTKHGANKLAEHLNADGIKSAAIHGNKSQGARTRALADFKDGKLKA 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + +V NF++P AE+Y+HRIGRTGRA GKA +LV ++ + Sbjct: 300 LVATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLA 359 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 IE+L+++++ L + +P ++ + H + N P++S+G Sbjct: 360 DIERLLKREIPRLALEGYDPDPSIKAAPL----HKKPKNNAPRRSSG 402 >gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pseudoporcinus SPIN 20026] gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pseudoporcinus SPIN 20026] Length = 538 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G++ + V + GG + Q K L+ Sbjct: 61 N---KIRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F++NP+ +++ T +E +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V + L+ +GF IHG++DQ R++++ +FK + ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI +V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|152972086|ref|YP_001337232.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956935|gb|ABR78965.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 643 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 234/379 (61%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 ID---PELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDLSS 377 KL +V+ N +L S Sbjct: 362 RTMKLTIPEVELPNAELLS 380 >gi|319404441|emb|CBI78044.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498] Length = 415 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 156/370 (42%), Positives = 229/370 (61%), Gaps = 8/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGLS +V + AG KP IQ K IP++L+ HD+ GIAQTG+GKT +F LP+L Sbjct: 9 FTELGLSSILVKNLFSAGMNKPKFIQAKAIPVMLKGHDILGIAQTGSGKTLAFSLPILNR 68 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G R + R LIL PTRELA Q+ + K +L+ L++GG+ Q +++ Sbjct: 69 ILTLGDKRYPKTARALILVPTRELAIQIEEAISAVAKGTHLSTCLIVGGMSRLIQIRRMA 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+LI TPGR++D + ++ ++DEADRMLDMGFI ++ I + + QT Sbjct: 129 KGVDILIATPGRLMDLIRSKYVDLSQSRFFILDEADRMLDMGFISDVRQIANFLHEKCQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM+ E+ +++N L+ P +IEV + +TA I S+K ++L +LL Sbjct: 189 ALFSATMSKEVNVLADNLLRKPVKIEVVSQGTTAAEITQVLYCV--STSEKKSILSKLL- 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + I+F K ++ SL K G+SV IHGN Q +R L NF+EG ++++V Sbjct: 246 TNPALTSVIVFIRTKHGADSVARSLAKTGYSVATIHGNKSQNARQCALKNFREGLVRVLV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID-- 358 A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G G A TL E I+ + Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGYAITLF-DEKIEQVRLC 364 Query: 359 AIEKLIEKKV 368 AIE+LI K+ Sbjct: 365 AIERLIRMKL 374 >gi|303238786|ref|ZP_07325318.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] gi|302593665|gb|EFL63381.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] Length = 381 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 153/371 (41%), Positives = 229/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF L + ++ A+ + GY PT IQ + IP++L+ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MDFEKLNIITPILKAICEEGYTTPTLIQQQAIPVILEGRDLLGCAQTGTGKTAAFAIPLL 60 Query: 61 TILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K R + R+ + LIL PTRELA Q+ ++ E YG+ + A++ GG+ Q Sbjct: 61 QTLYKERTNLKGQRIVKGLILTPTRELAIQIGESLEAYGRYTGIKHAVIFGGVSQVPQVN 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G D+++ TPGR+LD N+ + ++ +++L++DEADRMLDMGF ++ I S + T Sbjct: 121 KLRSGVDIIVATPGRLLDLMNQKYINVSCLKMLILDEADRMLDMGFSFDVKKIISRLTDT 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM E+ K+ + L+NP ++EV SST +TIE Y K L Sbjct: 181 RQTLLFSATMPKEITKMVDAILKNPVKVEVTPVSSTVDTIEQ---NVYFVEQKDKKSLLI 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L +++ ++F K + L K + AIHG+ Q +R L+NFK + Sbjct: 238 KLLKNRAIESVLVFTRTKHGADKIAKDLAKLSITAQAIHGDKSQVARQIALNNFKLKRTR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI ++ H+ NFD+PN E Y+HRIGRTGRAG G A + +E++ ++ Sbjct: 298 VLVATDIAARGIDIQELSHIINFDLPNVPETYVHRIGRTGRAGMVGTALSFCDREEMGYL 357 Query: 358 DAIEKLIEKKV 368 AI+KLI KK+ Sbjct: 358 RAIQKLISKKI 368 >gi|166711384|ref|ZP_02242591.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 634 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLSGAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 71 ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ +I + + K L ++L+ Sbjct: 188 LFSATMPPAIRRIAQTYLKDPVEVTIAAKTTTSASIRQRY--WWVNGLHKLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 246 EPFDGM---IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A V + + + Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRS 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354] Length = 461 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 152/375 (40%), Positives = 221/375 (58%), Gaps = 8/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS V+ A+ GY +PTPIQ + IP VL+ D+ GIAQTGTGKTA+F+LP + Sbjct: 4 FTDLGLSQPVLQALDMKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63 Query: 63 LEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + R L+L PTRELA Q+A + + YG L V ++GG KL Sbjct: 64 LREAENQTPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTSVNKDRNKLH 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD ++ ++ +EILV+DEAD+MLD+GFI ++ I L P TRQT Sbjct: 124 RGTDILVATPGRLLDLIDQRAFTLDKVEILVLDEADQMLDLGFIHALRKINELTPKTRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++ + + +NP ++ V S+TAE IE Q +K +LL+ +L Sbjct: 184 LFFSATMPKAIKDLVSQYCRNPAQVSVTPESTTAERIEQFLF--MVQQDEKQSLLELILS 241 Query: 241 SQ----DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + ++ ++F K + L + G AIHGN Q R + L FK Sbjct: 242 GRHEIPGKLERVLVFARTKHGCDRVVKKLAQVGIPANAIHGNKSQPQRERALDEFKRAKT 301 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DIP V HV N+++PN E Y+HRIGRT RAG G A A+++ ++ Sbjct: 302 PVLVATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERQY 361 Query: 357 IDAIEKLIEKKVDWL 371 + I K + + + L Sbjct: 362 LKDIRKTTDAEFERL 376 >gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase domain-containing protein [Thermobispora bispora DSM 43833] gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM 43833] Length = 618 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 148/348 (42%), Positives = 209/348 (60%), Gaps = 2/348 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ P++ A+ G V P PIQ +PL L D+ G A+TGTGKT +F +P L + Sbjct: 10 FRDLGVIPEIADALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGIPTLQL 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + K R + PR LIL PTRELA QV ++ + + GG +E Q + L+ G Sbjct: 70 IGKPRKNRKKPRGLILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQIEALKNG 129 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR+LD N+ L ++ I ILV+DEADRMLD+GF+P I+ I L+P RQT+L Sbjct: 130 VDVVVGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPEKRQTML 189 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQS 241 FSATM E+ +S +L P I AET Y + K +L ++LQS Sbjct: 190 FSATMPGEIVALSRRYLNRPTHIRAEIAEIEAETKPRTTQFVYRTHRMDKIEILARVLQS 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++FC K+ + + L +GF+V A+HG++ Q R + L F+ G I ++VA Sbjct: 250 TE-LTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKINVLVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +D+AARG+D+ DV HV N+D+P + YIHRIGRTGRAGR G A T V Sbjct: 309 TDVAARGIDVDDVTHVINYDLPQDEKTYIHRIGRTGRAGRSGVAITFV 356 >gi|295680824|ref|YP_003609398.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002] gi|295440719|gb|ADG19887.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] Length = 481 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 223/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ V D Y PTP+Q K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIDPLLRNVQDLNYQIPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++++G A R L+L PTRELA QV +F YG+ +L GG+ Q K Sbjct: 61 QRLVQRGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGRGLDLRFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT TD+++ ++ N L+ P I V+ P++TA I+ V K L L Sbjct: 181 QTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASRIKQWVVPV--DKKNKPDLFMHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +++ ++ ++F + V L L++ G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 239 V-AENGWQHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGEVQM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 358 AIEALIRQ 365 >gi|238896669|ref|YP_002921414.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae NTUH-K2044] gi|329997852|ref|ZP_08302922.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3] gi|238548996|dbj|BAH65347.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328538887|gb|EGF64951.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3] Length = 659 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 234/379 (61%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 24 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 84 IDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 140 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 141 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 200 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Y +K L + L++ Sbjct: 201 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 258 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 259 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 317 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 318 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 377 Query: 359 AIEKLIEKKVDWLNGDLSS 377 KL +V+ N +L S Sbjct: 378 RTMKLTIPEVELPNAELLS 396 >gi|198282877|ref|YP_002219198.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666755|ref|YP_002425078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247398|gb|ACH82991.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518968|gb|ACK79554.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 617 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 224/363 (61%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D L+ + AV + GY +P+PIQ ++IP +L+ DV G+AQTGTGKTA+F LP+L Sbjct: 7 LRFIDFALAEPIQKAVTEIGYEQPSPIQAQSIPPLLEGRDVIGLAQTGTGKTAAFALPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ G +R P+ L+L PTRELA QVA+ + Y K V + GG Q K+L Sbjct: 67 SRVDLG---LRAPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQAMTLQLKQL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGRI DH R L +++++ +V+DEAD ML MGFI +++I P RQ Sbjct: 124 QRGVQVVVGTPGRIQDHLRRKTLRLDHLQAVVLDEADEMLRMGFIDAVEDILKHTPEGRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM D ++++++ +L+NP I + + ++T I + + K L ++L Sbjct: 184 VALFSATMPDAIRRIAKTYLRNPLEIRIKSATTTVAAIRQRYWQVSGTH--KLDALTRIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +++ ++F K V L LE +G++ A++G++ Q R + + K GT+ ++ Sbjct: 242 EVEES-NAWLVFVRTKTATVELAERLEARGYACGALNGDLSQAMREQTIERLKAGTLDIV 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+PN E Y+HRIGRTGRAGR G A VA + + A Sbjct: 301 VATDVAARGLDVDRISHVINYDIPNDTEAYVHRIGRTGRAGRTGDAILFVAPRERHLLHA 360 Query: 360 IEK 362 IE+ Sbjct: 361 IER 363 >gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021] gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021] Length = 561 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 153/397 (38%), Positives = 227/397 (57%), Gaps = 21/397 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P+++ A+ GY +PTPIQ + IP +L+ D+ G A TGTGKTA+F LP+L Sbjct: 12 FADLTLRPELLHALSGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPVLQR 71 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + P L+L PTRELA QV++ F YG+ V + GG P Q + L++G Sbjct: 72 MTRDGGGGE-PMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQPIGRQLRALQQG 130 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR LDH RG L ++++E++V+DEAD MLDMGF I+ I P RQT+L Sbjct: 131 VDIVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAILQETPENRQTVL 190 Query: 183 FSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQL 238 FSATM + ++ L +P RIE+ P + +V A K A L ++ Sbjct: 191 FSATMPPRINGIARRHLNDPVRIEMGRETTAPGEAPLVRQTAYVVPRAH---KPAALGRV 247 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + I+FC + V L +L +G+ A+HG + Q R +++ + GT L Sbjct: 248 LDVE-APTAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRLRTGTADL 306 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV N+DVP+ E+Y+HRIGR GRAGR G A TL + + + Sbjct: 307 LVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLK 366 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 IE++ ++++ P+EK+ AR+ Sbjct: 367 TIERVTKRRI------------PIEKVPTIADLRARR 391 >gi|110598397|ref|ZP_01386670.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans DSM 13031] gi|110340006|gb|EAT58508.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans DSM 13031] Length = 598 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 228/371 (61%), Gaps = 7/371 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF L L+ ++ A+ + GY PTPIQ +TIPL+L+ DV G AQTGTGKTA+F LP+L+ Sbjct: 10 DFRSLQLAEPLMQALEEVGYENPTPIQAETIPLLLEGRDVLGQAQTGTGKTAAFALPVLS 69 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 + R + P+ L+L PTRELA QVA+ F++Y + V + GG + Q + L+ Sbjct: 70 NI---RLALAEPQALVLAPTRELAIQVAEAFQRYAVHLKGFHVVPIYGGQDYGIQLRMLK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++DH RG L +++++ LV+DEAD ML MGFI ++ I P RQ Sbjct: 127 RGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILDQTPKDRQV 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++++ +L NP ++ + T ++T ETI + S K +L ++L+ Sbjct: 187 ALFSATMPSAIRRIAQKYLNNPAQVTIQTKTTTVETIRQRYWIVGG--SHKLDILTRILE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF K + L L+ +G+ A++G++ Q R + + K G + +++ Sbjct: 245 VE-PFDGILIFVRTKTMTIELAEKLQARGYGAAALNGDMAQNQRERTVDQLKNGALSIVI 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + + AI Sbjct: 304 ATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRTGDAILFVSPREKNMLYAI 363 Query: 361 EKLIEKKVDWL 371 EK +++ + Sbjct: 364 EKATHSRIELM 374 >gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora] gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora] Length = 631 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 230/371 (61%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD GL+ +++ AV + GY +P+PIQ IP ++ D+ G AQTGTGKTA+F LP+L Sbjct: 63 FADFGLNAEILQAVTEKGYKQPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAR 122 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ L+L PTRELA QVAD+F Y + ++ V + GG F Q +L+R Sbjct: 123 MDPDQ---RSPQVLVLAPTRELAVQVADSFSTYAAHLPHIRVLPVYGGADFRDQINRLKR 179 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +G L ++ + +LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 180 GIQVVVGTPGRVMDHMRQGTLDLSGLRVLVLDEADEMLRMGFIDDVEWIIEQLPKQRQVV 239 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S N+L NP I + S A I ++ +A + K L ++L++ Sbjct: 240 LFSATMPTEIRRISLNYLNNPAEITIRQKGSDASRIRQRYLMVHAPH--KLEALNRVLEA 297 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T + IIF K V + SLE G V ++G++ Q R + + ++G+I ++VA Sbjct: 298 E-TGEGVIIFGRTKAITVTIAESLELTGHDVAVLNGDVAQSQRERTIERLRKGSINILVA 356 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ V V N+D+P +E Y+HRIGRTGRAGR G A + + + + +E Sbjct: 357 TDVAARGLDVDRVSLVINYDIPFDSEAYVHRIGRTGRAGRTGDAILFLTPRERRFLGGLE 416 Query: 362 KLIEKKVDWLN 372 + + + ++ ++ Sbjct: 417 RAVGRPIEPMD 427 >gi|73540622|ref|YP_295142.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] Length = 632 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 151/386 (39%), Positives = 226/386 (58%), Gaps = 21/386 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++ A+ + Y PTP+Q + IP L D+ +QTG+GKTA+F+LP + Sbjct: 53 FATLGLDAAILRALSELNYNNPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 112 Query: 63 LEKGRARVR------------------MPRTLILEPTRELAAQVADNFEKYGKNYNLTV- 103 + + A R P L+L PTRELA QV + KYG+N V Sbjct: 113 ISEKPATNRPTEPAKRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRNLRRIVC 172 Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163 A ++GG+P+ Q L + D+L+ TPGR+LDH + G++ ++ +++LV DEADRMLDMGF Sbjct: 173 ASILGGMPYPKQLAALSKMPDILVATPGRLLDHISAGRIDLSALDMLVFDEADRMLDMGF 232 Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223 I I P +RQTL+FSAT+ + +++ L++P+RIE+ + IE Sbjct: 233 ADDIDAIVDATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHF 292 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 T S K LL LL+ T+K I+F K++ +L L GF+ A+HG++ Q + Sbjct: 293 T-DDMSHKERLLDHLLRDA-TLKQAIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGA 350 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G Sbjct: 351 RNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSG 410 Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVD 369 A LV D IE+ ++D Sbjct: 411 VAINLVNHNDTFQWKRIERFTNNRID 436 >gi|237735417|ref|ZP_04565898.1| ATP-dependent RNA helicase RhlE [Mollicutes bacterium D7] gi|229381162|gb|EEO31253.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. D7] Length = 418 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/351 (42%), Positives = 221/351 (62%), Gaps = 6/351 (1%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRT---LI 77 Y P+PIQ + IP ++ D+ G A+TGTGKTA+F LP+L L + PRT LI Sbjct: 3 YDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKALI 62 Query: 78 LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137 L PTRELA Q+ + FE NL A++ GG+ +Q K+ RG DVLI TPGR++D + Sbjct: 63 LAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLIDLY 122 Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 N+G + + ++E LV+DEADRMLDMGFI I+ I +P QT+LFSAT+ DE++ + + Sbjct: 123 NQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDEIKHLVSD 182 Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257 L +P +I +++ + T E I + K LL +LL++ + N I+F K+N Sbjct: 183 LLNDPLKIMISSGNVTVEKINQSLY--FVDKVNKAKLLIKLLENPQ-IYNAIVFVRTKRN 239 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 V LC L K + IHG+ Q +R++ L+NFK ++++VASD+AARG+DI ++ HV Sbjct: 240 VDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTHV 299 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 NFD+P++AENY+HRIGRT RAG G+A T + ++ + I+K I + + Sbjct: 300 INFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQKFINQDI 350 >gi|330446057|ref|ZP_08309709.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490248|dbj|GAA04206.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 426 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 159/390 (40%), Positives = 226/390 (57%), Gaps = 21/390 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----- 55 M F L L P ++ A+++ GY PT +Q + IPL L+ DV AQTGTGKTA+F Sbjct: 1 MSFESLNLHPNLLKALVELGYSSPTDVQKQAIPLALKGEDVMAGAQTGTGKTAAFSLPLL 60 Query: 56 ---------VLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106 +A R LIL PTRELA QV D+ Y K +L VA+ Sbjct: 61 QRLLTLPSQSEQSAESSTDSKASGHPIRALILTPTRELAQQVFDSMSAYAKYTDLKVAVA 120 Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIP 165 GG Q K + GAD+L+ TPGR+LDH FNR + + IE V+DEADRMLDMGFI Sbjct: 121 YGGTSMNVQVKAINAGADILVATPGRLLDHVFNR-SVSLTEIETFVLDEADRMLDMGFIV 179 Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225 IQ I +P RQTL FSAT + +++K++ + L PK +EV ++ AET+E Sbjct: 180 DIQRIMKRMPDERQTLFFSATFSKQVKKLAFDILTEPKMVEVTPANTAAETVEQMVYPV- 238 Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 +K LL L+ S++ + ++F K+ L L G +I+G+ Q +R Sbjct: 239 -DKHRKAELLAYLIGSRN-WQQVLVFTKTKQGSDKLAKDLGLDGIKAVSINGDKSQGARQ 296 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 + L FK G ++++VA+D+AARGLDI +G+V NFD+P +AE+Y+HRIGRTGRAG G A Sbjct: 297 RALDEFKSGKVRVLVATDVAARGLDIEQLGYVVNFDMPYKAEDYVHRIGRTGRAGMTGHA 356 Query: 346 FTLVAKEDIKHIDAIEKLIEKKV--DWLNG 373 TL++ ++ + AIE+L++ ++ WL G Sbjct: 357 ITLMSLDEEWALKAIEELLDTRIPQQWLEG 386 >gi|262042721|ref|ZP_06015875.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039946|gb|EEW41063.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 634 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 234/379 (61%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 24 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 84 IDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 140 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 141 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 200 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Y +K L + L++ Sbjct: 201 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 258 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 259 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 317 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 318 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 377 Query: 359 AIEKLIEKKVDWLNGDLSS 377 KL +V+ N +L S Sbjct: 378 RTMKLTIPEVELPNAELLS 396 >gi|256848375|ref|ZP_05553818.1| autoaggregation-mediating protein [Lactobacillus coleohominis 101-4-CHN] gi|256714973|gb|EEU29951.1| autoaggregation-mediating protein [Lactobacillus coleohominis 101-4-CHN] Length = 500 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 146/384 (38%), Positives = 235/384 (61%), Gaps = 13/384 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS ++ AV +GY + TPIQ +TIP+VL+ DV G AQTGTGKTA+F LP++ Sbjct: 13 LKFGELGLSKSLLRAVKQSGYEEATPIQAQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 72 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ +++ PTRELA Q + + G + ++ V ++ GG Q L+ Sbjct: 73 EHIDLDNPAIQ---AIVISPTRELAIQTQEELYRLGHDKHVKVQVVYGGADIRRQINSLK 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+ DH +RG + + +I+ LV+DEAD ML+MGF+ I+ I P RQT Sbjct: 130 KHPQILVGTPGRLRDHISRGTVNLEHIQTLVLDEADEMLNMGFLDDIEAIIKETPEKRQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++ F+++P+ +++ T + ++ +V A+ +K ++ +L+ Sbjct: 190 LLFSATMPPEIKRIGVQFMRDPQMVKIKAKELTTDLVDQYYVR--AKDYEKFDIMTRLID 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F K+ V L L +G++ IHG++ Q R KI+ FK G + ++V Sbjct: 248 VQDPDLT-IVFGRTKRRVDELSRGLVARGYNAAGIHGDLTQDRRSKIMKKFKNGDLDILV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P+ ++Y+HRIGRTGRAG HG + T V ++ ++ I Sbjct: 307 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 366 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 EKL + + L PP E+ Sbjct: 367 EKLTRVR-------MLPLKPPTEE 383 >gi|172065244|ref|YP_001815956.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria MC40-6] gi|171997486|gb|ACB68403.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MC40-6] Length = 477 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 154/366 (42%), Positives = 225/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + D Y PTP+Q+K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIAPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++++G A R L+L PTRELA QV +F YGK +L GG+ Q K Sbjct: 61 QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + +E LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT TD+++ ++ + L++P I V+ P+ TA I+ +V T + +K + Sbjct: 181 QTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQ-WVVTVDKRNKPDLFMH-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +++ + ++F + V L L++ G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 238 LVAENNWDHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIEALI 363 >gi|149184|gb|AAA61345.1| RNA helicase [Klebsiella pneumoniae] Length = 659 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 234/379 (61%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 24 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 84 IDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 140 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 141 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 200 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Y +K L + L++ Sbjct: 201 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 258 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 259 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIA 317 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 318 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 377 Query: 359 AIEKLIEKKVDWLNGDLSS 377 KL +V+ N +L S Sbjct: 378 RTMKLTIPEVELPNAELLS 396 >gi|194333556|ref|YP_002015416.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194311374|gb|ACF45769.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii DSM 271] Length = 607 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 221/371 (59%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L+ V+ A+ GY PTPIQ++TIP +LQ DV G AQTGTGKTA+F LP+L+ Sbjct: 33 FRDLELAAPVIEALDKVGYENPTPIQLQTIPYILQGRDVLGQAQTGTGKTAAFALPILSR 92 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L+L PTRELA QVA+ F++Y + V + GG + Q K+L+R Sbjct: 93 IDCDK---NYPQALVLTPTRELAIQVAEAFQRYAACMPDFHVLPIYGGQDYAGQLKRLKR 149 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH R L ++ + LV+DEAD ML MGF+ ++ I P +RQ Sbjct: 150 GVHVVVGTPGRVIDHIKRSSLKLDKLHTLVLDEADEMLRMGFVDDVEWILEQTPASRQVA 209 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ L +P I + + SST + I F+ A + K L ++L++ Sbjct: 210 LFSATMPSVILRIARKHLSDPAEITIKSKSSTVDAITQRFLTVGAHH--KLEALTRILEA 267 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIF + +L L +G++ A+ G + Q R K + K G + ++VA Sbjct: 268 E-PFDGVIIFVRTRTATQDLSEKLRARGYAAAALSGEMVQHQREKTIDQLKNGKLNIIVA 326 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ V HV N+D+P+ E+Y+HRIGRTGRAGR G A V ++ + IE Sbjct: 327 TDVAARGLDVERVTHVINYDIPSDTESYVHRIGRTGRAGRSGDAILFVTSREMSMLRTIE 386 Query: 362 KLIEKKVDWLN 372 + + + +D + Sbjct: 387 RAVRRSIDRME 397 >gi|254497847|ref|ZP_05110613.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12] gi|254352925|gb|EET11694.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12] Length = 584 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 229/372 (61%), Gaps = 7/372 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FA S + A+ D + P+PIQ +TIPL L+ D +AQTGTGKTA+F LP Sbjct: 7 NFASFNFSDAINQALEDMKFTTPSPIQTQTIPLFLEGRDAIALAQTGTGKTAAFALP--- 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 IL+K + + LIL PTRELA QVA+ FE + + VA L GG + Q K+L Sbjct: 64 ILQKITPNGQGTQALILAPTRELAIQVAEQFELLSARQHGTKVATLCGGQEYGRQLKQLR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGRILDH +G L ++N+ ++DEAD ML MGFI I+ I + +P +Q Sbjct: 124 AGAQIVVGTPGRILDHIEKGTLQLSNLRTFILDEADEMLRMGFIEDIETIMAKLPEQKQI 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++++ +L NP IE+ + ++T ++IE F+ +A +K L ++L Sbjct: 184 GLFSATMPHRIRQIANTYLNNPASIEIRSETATVKSIEQRFL--FASGHQKPDALVRVLA 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + I+F K + + L++QG AIHG+I Q R +I++ F++G I ++V Sbjct: 242 VEE-YQGVIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV N+D+P+ E Y+HRIGRTGRAGR G A V ++ + I ++ Sbjct: 301 ATDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKESRLISSV 360 Query: 361 EKLIEKKVDWLN 372 E+ +++ +N Sbjct: 361 ERHTRQRITKVN 372 >gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957] gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant RNA helicase(C-terminal) (rhlE-like) [Ralstonia solanacearum CFBP2957] Length = 603 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 148/385 (38%), Positives = 230/385 (59%), Gaps = 23/385 (5%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LGL ++V A+ + Y PTP+Q + IP L D+ +QTG+GKTA+F+LP + + + Sbjct: 35 LGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISE 94 Query: 66 G-------------RARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV-A 104 R + R PR L+L PTRELA QV +YG++ V A Sbjct: 95 QPEPQRPRMDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCA 154 Query: 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFI 164 ++GG+P+ Q L R D++I TPGR+LDH + G++ ++ +++LV DEADRMLDMGF Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214 Query: 165 PYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224 I+ I P +RQ L+FSATM +++++E ++ P+RIE+ IE T Sbjct: 215 DDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFT 274 Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284 S K LL LL+ ++K I+F K++ +L L + GF+ A+HG++ Q +R Sbjct: 275 -DDMSHKQQLLDHLLRDA-SLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGAR 332 Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344 + L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G Sbjct: 333 NRTLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGI 392 Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVD 369 A LV D IE+ ++++++ Sbjct: 393 AINLVNHGDTFQWRRIERFVDRRIN 417 >gi|91201974|emb|CAJ75034.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia stuttgartiensis] Length = 449 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 226/369 (61%), Gaps = 8/369 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F + +V + GYV PTPIQ++ IPL+L+ DV G+AQTGTGKTA+FVLP+L Sbjct: 3 NFQTFNFNSNIVAGIKSVGYVTPTPIQLQAIPLILEGTDVMGLAQTGTGKTAAFVLPILH 62 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +G R ++R L++ PTRELA QV +F+ G +L + GG+ Q +L Sbjct: 63 RLMQGERGKIR---ALVIVPTRELAEQVLQDFKTLGSKTSLRSISIYGGVSITQQINRLR 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G ++++ PGR+LDH + + ++ +E+LV+DEAD M DMGF+P I+ I + RQT Sbjct: 120 SGVEIVVACPGRLLDHMKQRTIELSRVEVLVLDEADHMFDMGFLPDIRKIIKCLSHKRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM DE++K+++ L P +++ ++ A T++H + K LL ++LQ Sbjct: 180 LLFSATMPDEIRKLAQEALTKPVTVQLG-KTAPASTVKHALYP--VKQHLKIPLLLKILQ 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 DT ++ +IF K +L L + G+ + GN+ Q R L F+ G Q++V Sbjct: 237 HTDT-QSVLIFTRTKYRAKSLGDRLIRAGYKATSFQGNLSQPQRQAALGGFRNGAYQILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV N+D+P+ E Y+HRIGRTGRA R G AFTLV ++D + I Sbjct: 296 ATDIAARGIDISQISHVINYDIPDTPEAYVHRIGRTGRAARTGDAFTLVTEDDKAMVRGI 355 Query: 361 EKLIEKKVD 369 E ++ +++ Sbjct: 356 ENILGSRIE 364 >gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B] gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B] Length = 637 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 229/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL+ V+ A+ + GY PTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLLCS 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ A + P+ L+L PTRELA QVA+ F Y K+ V + GG Q + L R Sbjct: 68 VD---ANLNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALRR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGFI I+ I P +RQ Sbjct: 125 GPQVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESRQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L+NP I + +T E+IE FV +Q++K AL++ +L+ Sbjct: 185 LFSATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQV-SQHNKLEALVR-VLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + + L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 243 ENT-EGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 361 Query: 362 KLIEKKV 368 + ++ Sbjct: 362 RATNSRI 368 >gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411] gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411] Length = 713 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 230/370 (62%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL V+ AV G+ P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP+L+ Sbjct: 76 FDGLGLPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSR 135 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ + R P+ L+L PTRELA QVA++F+ + ++ + V + GG + Q L R Sbjct: 136 IDVSK---RHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRR 192 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++ + +V+DEAD ML+MGF ++ I P +Q Sbjct: 193 GAHIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVA 252 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++S+ +L +P+ I V T+E IE ++ + K L ++L+ Sbjct: 253 LFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYL--LVSHRDKLDALTRILEI 310 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K L L +GF+ AI+G+I Q R + + K+G + ++VA Sbjct: 311 TE-FEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVA 369 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+D+P+ E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 370 TDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIE 429 Query: 362 KLIEKKVDWL 371 + + +++ + Sbjct: 430 RATKSRLNEI 439 >gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902] gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902] Length = 458 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 155/369 (42%), Positives = 228/369 (61%), Gaps = 12/369 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F L L + V ++ ++GY+ PTPIQ TIP VLQ D+ AQTGTGKTA+F+LP++ Sbjct: 24 LTFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPII 83 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + + + +L+L PTRELAAQV + + Y K L + GG+ Q K+L Sbjct: 84 ELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRL 143 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D+L+ TPGR+LD N+ + +N+++LV+DEADRMLDMGFI I+ + +P RQ Sbjct: 144 QGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQ 203 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 ++FSAT + ++K++ L +P I+ + + A TIEH + ++K LL L+ Sbjct: 204 NMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEH--LVHPCDMARKVDLLCHLI 261 Query: 240 QSQDTMKNGIIFCNQK----KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ + K ++F K K V LCH Q AIHGN Q +R + L FK G Sbjct: 262 KT-NKWKQVLVFARTKHGADKVVKILCH----QHMRASAIHGNKSQGARTRALEGFKNGD 316 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+AARG+DI + +V N D+PN AE+Y+HRIGRTGRAG G A +LVA E+ Sbjct: 317 IKILVATDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEAL 376 Query: 356 HIDAIEKLI 364 + AIEK I Sbjct: 377 LLKAIEKFI 385 >gi|223937455|ref|ZP_03629359.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514] gi|223893806|gb|EEF60263.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514] Length = 645 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/367 (40%), Positives = 233/367 (63%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGLS ++ A+ G+ + +PIQ + IP++LQ DV G +QTG+GKTA+F +P + Sbjct: 6 FSELGLSAELQKAIDKMGFEQASPIQAEAIPVLLQGRDVVGQSQTGSGKTAAFAVPAI-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121 EK + R + LIL PTRELA QV++ K AL I GG +E Q L + Sbjct: 64 -EKVDPQNRSVQILILCPTRELAVQVSEEVHKLSIFKRGIHALPIYGGQSYERQFMGLRQ 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA ++I TPGR++DH RG L ++ ++++++DEAD MLDMGF I+ I VP RQT+ Sbjct: 123 GAQIVIGTPGRVMDHMRRGTLRLDQVKMVILDEADVMLDMGFREDIEFILQAVPTERQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM +Q++ + + ++P+ + + + T T+E F ++ K LL +L+ Sbjct: 183 FFSATMPRPIQELIQKYARDPQSVRIEQKAMTVPTVEQFFYEVDRRF--KVELLTRLIDI 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D +K GI+FCN K+ V +L L QG+S +HG++ Q R ++++ F++ ++ +VA Sbjct: 241 HD-LKLGIVFCNTKRMVDDLVDHLNAQGYSADRLHGDMSQAMRDRVMNKFRKSGLEFLVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P AE+Y+HRIGRTGRAGR G+A + VA ++ I IE Sbjct: 300 TDVAARGIDVDDVQVVFNYDLPYDAEDYVHRIGRTGRAGRSGRAISFVAGRELFQIQHIE 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RFTKMKI 366 >gi|170726556|ref|YP_001760582.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811903|gb|ACA86487.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 449 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 151/373 (40%), Positives = 226/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ AV + GY PTPIQ + IPL L+ ++ AQTG+GKTASFVLP+L Sbjct: 1 MPFSKLGLSEPILNAVTELGYTTPTPIQAEAIPLALKGKNLIAAAQTGSGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L G R + R L+L PTRELA QV + E YGK+ NL + GG+ + Q + L Sbjct: 61 ELLSAGETQRKKRARALVLTPTRELAVQVCKSIELYGKHLNLNAIAIYGGVDYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR+ D + + + + +LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IDGVDIVVATPGRLRDLYTQRAIHFDETTLLVLDEADRMLDMGFIEDITKIIDTLPEQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT++ +++++++ + + ++ N + IE T KK ALL L+ Sbjct: 181 SLLFSATLSRQVRELAKETVCDAIQLSFNKENEAKPNIEQWI--TTVDKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q+ +IF K L LEK+G IH Q R +IL++FK G I+ + Sbjct: 239 NEQN-WPQALIFIETKHGAAKLVSQLEKRGIEAECIHSGRTQAIREQILADFKSGKIRYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++ ++ARG+DI ++ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 ISTGISARGIDIDELPLVINYDLPFPADEYVHRIGRTGRAGSAGEAISLVSKDDFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE L+E++V Sbjct: 358 IESRLNHLLERRV 370 >gi|24374114|ref|NP_718157.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24348604|gb|AAN55601.1|AE015698_9 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 475 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 150/372 (40%), Positives = 225/372 (60%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL +V AV + GY PTPIQ + IP +L +V AQTGTGKTASFVLP+L Sbjct: 1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + R + R++IL PTRELA QV N +Y K LT + GG+ Q K+L Sbjct: 61 HRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + + + +LV+DEADRMLDMGFI I NI +P RQ Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++ +++ + + IE++ ++ + I+ T +K ALL L+ Sbjct: 181 NLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWL--TTVDKDRKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +IF K L LEK+G A H Q R ++L +FK G + + Sbjct: 239 K-ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ + +RG+DI + V N+D+P+ A++YIHRIGRTGRAG G+A + V+K+D +++ A Sbjct: 298 VATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCA 357 Query: 360 IEK----LIEKK 367 IE+ +IE+K Sbjct: 358 IERRLGHIIERK 369 >gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC 43734] gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC 43734] Length = 707 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 230/370 (62%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL V+ AV G+ P+PIQ +TIP++++ HDV G+AQTGTGKTA+F LP+L+ Sbjct: 76 FDGLGLPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSR 135 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ + R P+ L+L PTRELA QVA++F+ + ++ + V + GG + Q L R Sbjct: 136 IDVSK---RHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRR 192 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++ + +V+DEAD ML+MGF ++ I P +Q Sbjct: 193 GAHIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVA 252 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++S+ +L +P+ I V T+E IE ++ + K L ++L+ Sbjct: 253 LFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYL--LVSHRDKLDALTRILEI 310 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K L L +GF+ AI+G+I Q R + + K+G + ++VA Sbjct: 311 TE-FEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVA 369 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+D+P+ E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 370 TDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIE 429 Query: 362 KLIEKKVDWL 371 + + +++ + Sbjct: 430 RATKSRLNEI 439 >gi|8928554|sp|P33906|DEAD_KLEPN RecName: Full=Cold-shock DEAD box protein A; AltName: Full=ATP-dependent RNA helicase deaD Length = 643 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 234/379 (61%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 IDP---ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDLSS 377 KL +V+ N +L S Sbjct: 362 RTMKLTIPEVELPNAELLS 380 >gi|256852006|ref|ZP_05557393.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260661425|ref|ZP_05862338.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii 115-3-CHN] gi|282931887|ref|ZP_06337366.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii 208-1] gi|297205122|ref|ZP_06922518.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus jensenii JV-V16] gi|256615418|gb|EEU20608.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260547880|gb|EEX23857.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii 115-3-CHN] gi|281303998|gb|EFA96121.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii 208-1] gi|297149700|gb|EFH29997.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus jensenii JV-V16] Length = 484 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 151/381 (39%), Positives = 231/381 (60%), Gaps = 13/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+ ++ A+ +G+ + TPIQ KTIPL L DV G AQTGTGKTA+F LP Sbjct: 1 MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL+K + + L++EPTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 59 -ILQKINNKEHFIQALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGRILDH R + ++ I+ +V+DEAD MLDMGFI I++I T Sbjct: 118 QTPAILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAQNREHT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ E F++ P+ +++ + TA+ I+ FV A+ ++K ++ +L+ Sbjct: 178 LLFSATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFV--RAKEAEKFDIMCRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q ++F K+ V L L +G++ IHG++ Q RM +L FK G + ++V Sbjct: 236 VQ-APDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 E L +KK +S L PP Sbjct: 355 ENLTKKK-------MSPLRPP 368 >gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] Length = 561 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 218/367 (59%), Gaps = 2/367 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL P+++ A+ GY +PTPIQ + I + + D+ G A TGTGKTA+F LP+L Sbjct: 12 FADLGLRPELLRALSGLGYEEPTPIQREAIVPLTEGRDLLGQAATGTGKTAAFALPVLER 71 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + R P L+L PTRELA QV++ +YG+ V + GG P Q + LERG Sbjct: 72 LAQVEKRGDAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQPIGRQLRVLERG 131 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR +DH RG L + +++++V+DEAD MLDMGF + I + P RQT+L Sbjct: 132 VDVVVATPGRAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTILAETPKQRQTVL 191 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTP-SSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM + K++ L P RI +N + E VA + K A L ++L Sbjct: 192 FSATMPPRIDKLARQHLTEPARITINQERAEPGEAPRVRQVAYVVPRAHKPAALGRVLDV 251 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I+FC + V L +L +G+ ++HG I Q R ++++ + GT L+VA Sbjct: 252 E-APTAAIVFCRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMARLRNGTADLLVA 310 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N++VP+ E+Y+HRIGR GRAGR G A TL + + IE Sbjct: 311 TDVAARGLDVEQLTHVVNYNVPSAPESYVHRIGRVGRAGREGVAITLAEPREHGMLKTIE 370 Query: 362 KLIEKKV 368 ++ ++++ Sbjct: 371 RVTKQRI 377 >gi|156935688|ref|YP_001439604.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ATCC BAA-894] gi|156533942|gb|ABU78768.1| hypothetical protein ESA_03554 [Cronobacter sakazakii ATCC BAA-894] Length = 635 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 236/377 (62%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FTDLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 +++ +R P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 68 IDE---TLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++N++ LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 640 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 227/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLSGAVMKAVANVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 71 ADLNQLK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 188 LFSATMPPAICRIAQTYLKDPAEVTIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 246 EPFDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ V HV N+D+P E+Y+HRIGRTGRAGR+G A V + + + Sbjct: 303 VATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRS 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|229526712|ref|ZP_04416116.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426] gi|229336870|gb|EEO01888.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426] Length = 422 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 150/379 (39%), Positives = 232/379 (61%), Gaps = 9/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGL +++ A+ + G V PTPIQ + IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 6 ITFSQLGLDSRLLNALSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65 Query: 61 T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +E+ R + R L+L PTRELA QV D+ + Y K L + + GG + Q Sbjct: 66 QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT +++ V+ +++P ++V +STAET++ +K LL Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G + Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSYDEQPQ 362 Query: 357 IDAIEKLIEKKV--DWLNG 373 ++AIE+L+ ++ +WL G Sbjct: 363 LEAIERLLNTRLPQEWLKG 381 >gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans DS-1] Length = 448 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 152/378 (40%), Positives = 230/378 (60%), Gaps = 13/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG++ + A+ Y PTPIQ + IP +L+ D+ G+AQTGTGKTA+F LP+L I Sbjct: 6 FADLGVAEPLCRALAANNYTNPTPIQAQAIPALLEGRDLLGLAQTGTGKTAAFALPILQI 65 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R P R LIL PTRELA Q++ + E YGKN+ L ++ GG+ Q K + Sbjct: 66 LAAANEK-RQPKEARALILAPTRELAVQISQSIESYGKNFKLRHTVIFGGVNQFRQVKAM 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR+LD N+ + ++ +LV+DEADRMLDMGFI ++ I + +P RQ Sbjct: 125 TAGVDIVVATPGRLLDLMNQKHVNLSRTSLLVLDEADRMLDMGFIRDVRKIIAAMPRQRQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSATM +Q +++ L+ P R+EV T + I+ + + +K LL +LL Sbjct: 185 SLLFSATMPSSIQHLADEILREPVRVEVTPEVVTVDKIDQRVL--HVDGKRKRELLAKLL 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + I+F K + L+K G AIHGN Q +R + L F+ G +++ Sbjct: 243 DNSE-LSRVIVFTRTKHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDMFRNGKARVL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ D+ HV N+++PN E+Y+HRIGRT RAG+ G A + + H+ + Sbjct: 302 VATDIAARGIDVSDITHVINYELPNEPESYVHRIGRTARAGKSGIALSFCDASERSHLRS 361 Query: 360 IEKLIEKKV------DWL 371 IEKL ++ + +WL Sbjct: 362 IEKLTKRPLTVMDTTEWL 379 >gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis NCFD 2020] gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis NCFD 2020] Length = 537 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 229/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G++ + V + GG + Q K L+ Sbjct: 61 N---KVRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPANRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F++ P+ +++ T +E +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKEPEHVQIKNKELTNVNVEQFYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V + L+ +GF IHG++DQ R++++ +FK + ++V Sbjct: 236 V-DQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI DV HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISDVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMTPL 365 >gi|229515773|ref|ZP_04405232.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21] gi|229347542|gb|EEO12502.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21] Length = 397 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 154/373 (41%), Positives = 224/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ ++YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVDQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|256424779|ref|YP_003125432.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] gi|256039687|gb|ACU63231.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] Length = 492 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/433 (37%), Positives = 249/433 (57%), Gaps = 20/433 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LGL ++ A+ + GY PTPIQ + IP VL D+ G AQTGTGKTA+F +P+L Sbjct: 27 LSFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLL 86 Query: 61 TILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 ++ + R +R + LIL PTRELA Q+ ++F YGK +L ++ GG+ Q Sbjct: 87 QLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQHPQ 146 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L++G D+LI TPGR+LD ++ + + +I+ V+DEADRMLDMGF+ +Q + +P Sbjct: 147 TEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIVKLP 206 Query: 176 FTRQTLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ+L FSATM E+Q +++ L+ NP ++EV SSTAETI + + K L Sbjct: 207 EQRQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMY--FVNKNDKRNL 264 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L +L+ + +K ++F K + L K + AIHGN Q +R + L+NFK Sbjct: 265 LLHILKDK-AIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQ 323 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +++VA+D+AARG+DI ++ HV N+++PN E Y+HRIGRTGRAG G A + E+ Sbjct: 324 QTRVLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPEEK 383 Query: 355 KHIDAIEKLIEKKV------DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408 + I KLI +++ + NGD +L P A ++ +P +K GF R Sbjct: 384 AFLKDILKLISREIPVETEHPFHNGDSMALPAP----KPAPQQKPKQQHPRDKKG-GFSR 438 Query: 409 RKKNYSSQKSHIP 421 ++ + P Sbjct: 439 NRQGVVQSRDARP 451 >gi|238854499|ref|ZP_04644837.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3] gi|260664817|ref|ZP_05865668.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii SJ-7A-US] gi|282934107|ref|ZP_06339386.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii 208-1] gi|313472627|ref|ZP_07813116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus jensenii 1153] gi|238832852|gb|EEQ25151.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3] gi|239529420|gb|EEQ68421.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus jensenii 1153] gi|260561300|gb|EEX27273.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii SJ-7A-US] gi|281301854|gb|EFA94119.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii 208-1] Length = 484 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 151/383 (39%), Positives = 232/383 (60%), Gaps = 13/383 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+ ++ A+ +G+ + TPIQ KTIPL L DV G AQTGTGKTA+F LP Sbjct: 1 MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL+K + + L++EPTRELA Q + + G++ V ++ GG Q + L+ Sbjct: 59 -ILQKIDNKEHFIQALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGRILDH R + ++ I+ +V+DEAD MLDMGFI I++I T Sbjct: 118 QTPAILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAKNREHT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ E F++ P+ +++ + TA+ I+ FV A+ ++K ++ +L+ Sbjct: 178 LLFSATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFV--RAKEAEKFDIMCRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q ++F K+ V L L +G++ IHG++ Q RM +L FK G + ++V Sbjct: 236 VQ-APDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383 E L +KK +S L PP + Sbjct: 355 ENLTKKK-------MSPLRPPTD 370 >gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484] Length = 596 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/361 (40%), Positives = 209/361 (57%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL + AV D G+V P+ IQ + +P +L D+ G+AQTGTGKTA+F LP+L Sbjct: 27 FATLGLPAPLERAVADLGFVTPSAIQSQAVPALLAGRDIVGVAQTGTGKTAAFGLPLLAA 86 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ G A V+ ++L PTRELA QVAD + + L V + GG PF Q + + R Sbjct: 87 VDAGTAGVQ---AIVLTPTRELAMQVADAITSFATHLPGLAVVAVYGGSPFLPQQRAIAR 143 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR+LDH +RG L+++ + LV+DEAD ML MGF + + + P RQ Sbjct: 144 GAQVVVGTPGRVLDHLDRGTLVLDQVRYLVLDEADEMLRMGFAEDVDRVLASTPDRRQVA 203 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++V+E L P I V SST T+ + Y K L ++L Sbjct: 204 LFSATMPAPIRRVAEQHLHQPVEITVARQSSTVTTVRQTY--AVVPYRHKIGALGRVLAV 261 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D I+F + + +L ++G S I G++ Q R KI+ + G + ++VA Sbjct: 262 TDADAT-IVFVRTRGAAEEVGSALVERGISAAHISGDVAQSDREKIVDRLRSGALDVLVA 320 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V NFDVP AE Y+HRIGRTGRAGR G A + V + + IE Sbjct: 321 TDVAARGLDVERIGLVVNFDVPREAETYVHRIGRTGRAGREGVALSFVTPAEQSRLRTIE 380 Query: 362 K 362 + Sbjct: 381 R 381 >gi|294789302|ref|ZP_06754540.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453] gi|294482727|gb|EFG30416.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453] Length = 455 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 220/370 (59%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADL L ++ A+ AGY PTPIQ++ IP L D+ AQTG+GKTA+F+LP L Sbjct: 3 IQFADLNLDKNILSALQSAGYHSPTPIQMQAIPAALADKDIMASAQTGSGKTAAFLLPSL 62 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKK 118 I+++ + PR L+L PTRELAAQV N + Y N L+GG F Q K Sbjct: 63 QKIIKRSEKPGKGPRVLVLTPTRELAAQVEKNAQIYANNMKWVRTVTLVGGSSFGQQIKM 122 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L R DV++ TPGR++DH G++ +E+L++DEADRMLDMGFI I+ I + P R Sbjct: 123 LSRPIDVIVATPGRLMDHMRSGRIDFERLEVLILDEADRMLDMGFIDDIETIVAATPEDR 182 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT + K++ +NP+ IE+ + E + + LL + Sbjct: 183 QTLLFSATWDGAVGKLARKLTKNPEIIEIEREDKQGKIEEQLLYCDDKNHKNR--LLDHI 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + + +IF + K L L ++GF+ +HG++ Q R + L + ++G ++ Sbjct: 241 LRDAN-IDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A + + + Sbjct: 300 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGMAISFAEVNEYIAVH 359 Query: 359 AIEKLIEKKV 368 IE+ IE+K+ Sbjct: 360 KIERYIERKL 369 >gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925] gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925] Length = 528 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 150/367 (40%), Positives = 229/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL +S ++ A+ D G+ P+PIQ K IP +L D+ G AQTGTGKTA+F +P L Sbjct: 6 FEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ +++ ++L PTRELA Q K GK +++V + GG P + Q K L+R Sbjct: 66 IDLNNKSLQI---MVLCPTRELAIQATQEVHKLGKYKKDISVLAVYGGQPIDRQIKALKR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH R L +NI+++V+DEAD MLDMGF I+ I +P RQT+ Sbjct: 123 GVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQEIPQNRQTI 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++S+ + N + I+V T IE ++ + + K +L +L+ Sbjct: 183 LFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEV--KENNKLEVLSRLIDM 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ K +IFCN KK V + L+ +G+ +HG++ Q R ++++ F+ GTI+++VA Sbjct: 241 RNP-KLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G AFT VA + I+ + IE Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDIE 359 Query: 362 KLIEKKV 368 + + KV Sbjct: 360 RYTKTKV 366 >gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri 100-23] gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri 100-23] Length = 497 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 229/363 (63%), Gaps = 6/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ +GY + TPIQ +TIP+VL+ DV G AQTGTGKTA+F LP++ Sbjct: 1 MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ +I+ PTRELA Q + + GK+ ++ V ++ GG Q K L+ Sbjct: 61 ENVDTENPNIQ---AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+ DH NR + +++I+ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 118 QHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++ F+ +P+ + + T + ++ +V A+ +K ++ +L+ Sbjct: 178 LLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVR--ARDYEKFDIMTRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F K+ V L L +G++ IHG++ Q R KI+ FK + ++V Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P+ ++Y+HRIGRTGRAG HG + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354 Query: 361 EKL 363 EKL Sbjct: 355 EKL 357 >gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus amyloliquefaciens TA208] Length = 494 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ ++ G+ + TPIQ +TIPL L DV G AQTGTGKTA+F +P++ Sbjct: 5 FQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-- 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK + +++ PTRELA QV++ K G++ V + GG Q + L++ Sbjct: 63 -EKMNPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR + +NN+ +V+DEAD ML+MGFI I++I S VP QTLL Sbjct: 122 PHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ P+ ++V T I+ ++ Q KK L +LL Q Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM L FKEG I+++VA+ Sbjct: 240 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAG+ G A T + + + AIE+ Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 358 Query: 363 LIEKKVDWL 371 ++K+D + Sbjct: 359 TTKRKMDRM 367 >gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 43247] Length = 597 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/365 (40%), Positives = 223/365 (61%), Gaps = 6/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL + +V AV D GY P+PIQ TIP ++ DV G+AQTGTGKTA+F +P+L Sbjct: 17 LTFDDLDIDSRVRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPIL 76 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117 + LE + R P+ L+L PTRELA QVA+ F +Y + + V + GG + Q Sbjct: 77 SRLEGAGDGSGPRKPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGVQLA 136 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RGA V++ TPGR++DH +RG L ++ + LV+DEAD ML MGF ++ I + P Sbjct: 137 GLRRGAQVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAETPDD 196 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +Q LFSATM ++++++ +L +P+ I V + ++TA+ I ++ Q +K L + Sbjct: 197 KQVALFSATMPSAIRRLAQRYLNDPQEITVKSKTATAQNITQRYLQVSHQ--RKLDALTR 254 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + T I+F K+ L L +GFS AI+G++ Q R + ++ K G I Sbjct: 255 FLEVE-TFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGID 313 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + + Sbjct: 314 ILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGNALLFVSPRERHLL 373 Query: 358 DAIEK 362 +IE+ Sbjct: 374 RSIER 378 >gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13] gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13] Length = 444 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 227/381 (59%), Gaps = 6/381 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++ G P + A+ Y PTPIQ + IP+VL DV AQTGTGKTA+F LP+L Sbjct: 1 MSFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLL 60 Query: 61 TILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 ++EK R P LIL PTRELA Q+ +++ + + ++GG+ ++ QN Sbjct: 61 NLVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQN 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ + L+ TPGR++D + K+ + +I+ LVIDEADRMLDMGFIP I+ I Sbjct: 121 KLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQ 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +Q L+F+AT+ +++K+++ FL++P+RI V + + + I+ A Y++K +L Sbjct: 181 DQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQI-AYPVADYNQKKLVLV 239 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L D + IIF K+ L L +HG++ QR R + ++ FK I Sbjct: 240 DVLNEAD-LNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEI 298 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARG+D+ D+ HV NFD+P + E+YIHRIGRTGRA R GKA +LV ++ Sbjct: 299 QILVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFM 358 Query: 357 IDAIEKLIEKKVDWLNGDLSS 377 + IEK K++ + S+ Sbjct: 359 LQKIEKYANIKIEVIKSTHST 379 >gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC 33030] gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC 33030] Length = 675 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 148/391 (37%), Positives = 242/391 (61%), Gaps = 15/391 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL V+ A+ G+ P+ IQ +TIPL+++ DV G+AQTGTGKTA+F LP+L Sbjct: 72 FNGLGLPAPVLDAIKRVGFESPSQIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPILAR 131 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ R P+ LIL PTRELA QV+D+F+ + + ++V + GG + Q L R Sbjct: 132 IDTS---ARYPQALILAPTRELALQVSDSFQSFADHLGGISVLPIYGGQAYGIQLSGLRR 188 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++N+ LV+DEAD ML+MGF ++ I P +Q Sbjct: 189 GAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA 248 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++S ++L +P+ + V + T I ++ T A +K A+ + L + Sbjct: 249 LFSATMPNAIRRISHDYLNDPEEVTVKAKTRTNTNITQRYLFT-AHRNKLDAITRVLEVT 307 Query: 242 Q-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D M I+F K+ + L +GFS AI+G+I Q+ R + + ++G + ++V Sbjct: 308 EFDAM---IVFVRTKQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILV 364 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+PN E+Y+HRIGRTGRAGR G+A V + + + +I Sbjct: 365 ATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEALLFVTPRERRMLRSI 424 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391 EK+ K++ + DL P ++++++++ N Sbjct: 425 EKVTGAKIEEM--DL----PTVDEVNVSRMN 449 >gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147] gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147] Length = 449 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/368 (39%), Positives = 223/368 (60%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FADL L ++ A+ AGY +PTPIQ ++IP L D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSALKSAGYEEPTPIQAQSIPAALANQDIMASAQTGSGKTAAFLLPSLQK 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLE 120 I+++ + PR L+L PTRELA QV N + Y +N L+GG F Q K L Sbjct: 65 IIKRSEQPGKGPRVLVLTPTRELAQQVEKNAQLYAQNMKWVRTVTLVGGSSFGQQIKALS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R D+++ TPGR++DH G++ + +E+LV+DEADRMLDMGFI I+ I + +P +RQT Sbjct: 125 RPIDIVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAAMPESRQT 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + K++ +NP+ IE+ + + E + + LL +L+ Sbjct: 185 LLFSATWDGAVGKLARKLTKNPEVIEIERAEAQGKIEEQLLYCDDRNHKNR--LLDHILR 242 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + +IF K L L ++GF+ +HG++ Q R + L + ++G +++V Sbjct: 243 DAN-IDQCVIFTATKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLMDVRKGRCKILV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A + ++ + I Sbjct: 302 ATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAVSFADAKEYMMVHKI 361 Query: 361 EKLIEKKV 368 E+ I +K+ Sbjct: 362 ERYINRKL 369 >gi|254286146|ref|ZP_04961106.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226] gi|150423815|gb|EDN15756.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226] Length = 397 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 154/373 (41%), Positives = 225/373 (60%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 -NEHQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens QYMF] Length = 529 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 154/399 (38%), Positives = 240/399 (60%), Gaps = 17/399 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL + ++ A+ + G+ PTPIQ++ IP + D+ G AQTGTGKTA+F +PM+ Sbjct: 4 MHFEDLDIKKDILKALKELGFEVPTPIQVQAIPHLKMGKDIIGQAQTGTGKTAAFGIPMI 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKK 118 E+ + + + LI+ PTREL+ QVAD +K+ N+ + V L GG P Q K Sbjct: 64 ---ERVNPKNKAVQILIMAPTRELSVQVADEIQKFS-NHVIGVKTLAIYGGQPISTQIKA 119 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RG +++ TPGRILDH NR L + + +V+DEAD+MLDMGF ++ I P R Sbjct: 120 LKRGVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQMLDMGFQEDMEAILKETPTER 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQ 236 QT +FSAT++ E++++++ +++ P++I V + T I + V + + C +L Sbjct: 180 QTAMFSATISREIERIAQKYMKQPEKIMVAQKALTVPQISQYYFEVKPHEKVEALCRIL- 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D GIIFC K++V L L+ +G+S AIHG++ Q R +++ F+ TI Sbjct: 239 ----DMDKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTI 294 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VA+D+AARG+D+ DV V N+D+P E Y+HRIGRTGRAG+ G A+TL + ++ Sbjct: 295 DLLVATDVAARGIDVNDVEMVMNYDIPEDFEYYVHRIGRTGRAGKEGVAYTLATGKQMRT 354 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI--DIAQHNHA 393 + A+E I+ K+ + + ++N +EK IA HA Sbjct: 355 LKALESYIKGKI--VRRKIPTVNDVVEKQKDSIADQIHA 391 >gi|194290281|ref|YP_002006188.1| dead/deah box helicase/ATP-dependent RNA helicase [Cupriavidus taiwanensis LMG 19424] gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus taiwanensis LMG 19424] Length = 624 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 151/383 (39%), Positives = 229/383 (59%), Gaps = 21/383 (5%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LGL ++ A+ D Y PTP+Q + IP L D+ +QTG+GKTA+F+LP + + + Sbjct: 54 LGLDAAILRALSDLNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISE 113 Query: 66 -----------GRARVRMPRT-------LILEPTRELAAQVADNFEKYGKNYNLTV-ALL 106 R + + PR L+L PTRELA QV + KYG+N V A + Sbjct: 114 MPAPQRATEPAKRMKGKRPRPAPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVCASI 173 Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166 +GG+P+ Q L + D+L+ TPGR+LDH + G++ ++ +++LV DEADRMLDMGF Sbjct: 174 LGGMPYPKQLAMLAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADD 233 Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 I I + P +RQTL+FSAT+ + +++ L++P+RIE+ + IE T Sbjct: 234 IDAIVNATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHFTD- 292 Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 S K LL LL+ ++K I+F K++ +L L GFS A+HG++ Q +R + Sbjct: 293 DMSHKERLLDHLLRDA-SLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNR 351 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L+ + G ++++VA+D+AARG+D+PD+ HV NFD+P +AE+Y+HRIGRTGRAGR G A Sbjct: 352 TLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 411 Query: 347 TLVAKEDIKHIDAIEKLIEKKVD 369 LV D+ IE+ ++VD Sbjct: 412 NLVNHNDMFQWRRIERFTNQRVD 434 >gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC 53608] Length = 497 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 229/363 (63%), Gaps = 6/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ +GY + TPIQ +TIP+VL+ DV G AQTGTGKTA+F LP++ Sbjct: 1 MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ +I+ PTRELA Q + + GK+ ++ V ++ GG Q K L+ Sbjct: 61 ENVDTENPNIQ---AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+ DH NR + +++I+ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 118 QHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++ F+ +P+ + + T + ++ +V A+ +K ++ +L+ Sbjct: 178 LLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVR--ARDYEKFDIMTRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F K+ V L L +G++ IHG++ Q R KI+ FK + ++V Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P+ ++Y+HRIGRTGRAG HG + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354 Query: 361 EKL 363 EKL Sbjct: 355 EKL 357 >gi|16331758|ref|NP_442486.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803] gi|1001719|dbj|BAA10556.1| ATP-dependent RNA helicase; DeaD [Synechocystis sp. PCC 6803] Length = 492 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 226/368 (61%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS K + D G+ PT IQ + IPL+L D+ +QTGTGKTA+F LP++ Sbjct: 9 FADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMDR 68 Query: 63 LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ +G + LIL PTRELA QVA+ + + L + + GG E Q + LER Sbjct: 69 IDPEGDLQA-----LILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLER 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++D +R KL + I+ +V+DEAD ML MGFI ++ I P TRQT Sbjct: 124 GVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTRQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E++++ FL +P + V ST IE +SK AL Q +L+ Sbjct: 184 CFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKAL-QPILEM 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D ++ IIF K+ +L L++ G SV HGN+ Q R +++ F++G I+L+VA Sbjct: 243 EDP-ESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ HV NFD+P+ AE YIHRIGRTGRAG+ GKA LV D + + +IE Sbjct: 302 TDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSIE 361 Query: 362 KLIEKKVD 369 ++++++ Sbjct: 362 NRLKQQIE 369 >gi|89097884|ref|ZP_01170771.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] gi|89087386|gb|EAR66500.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] Length = 485 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 226/370 (61%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++ AV + G+ +PTPIQ + IP+ L D+ G AQTGTGKT +F +P+L Sbjct: 4 FSDFNLSKELEKAVSNMGFEEPTPIQAQAIPIGLSGKDMIGQAQTGTGKTTAFGIPLLEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL--E 120 ++ + L+L PTRELA QVA+ + G+ + + GG Q + L + Sbjct: 64 IDINEG----IQGLVLAPTRELAVQVAEELNRIGQVKGVRTLPIYGGQDISRQIRALKKD 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG ++ TPGR++DH R + +N I++ V+DEAD ML+MGFI I+ I S VP RQT Sbjct: 120 RGPHIIAATPGRLIDHIERKTIRLNKIKLAVLDEADEMLNMGFIEDIERILSEVPEQRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YSKKCALLQQL 238 LLFSATM +Q ++E F+ P+ +++ T + IE ++ + + + C+LL Sbjct: 180 LLFSATMPRRIQSLAERFMTEPEMVQIKAKELTVKNIEQHYMEVHEKQKFDVLCSLLD-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +QS + I+F KK V + L K+G+S IHG++ Q R +++ FKE TI + Sbjct: 238 IQSPEL---AIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDVPQNKRDQVIRRFKEQTIDI 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V+ +I H+ Sbjct: 295 MVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGLAVTFVSPREIDHLK 354 Query: 359 AIEKLIEKKV 368 IE++ + K+ Sbjct: 355 LIERVTKTKM 364 >gi|91783626|ref|YP_558832.1| putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans LB400] gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans LB400] Length = 523 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 224/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ V D Y PTP+Q+K IP VL DV AQTGTGKTA F LP+L Sbjct: 43 MSFALLGLIDPLLRNVQDLNYQTPTPVQVKAIPAVLGGRDVMAAAQTGTGKTAGFALPLL 102 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F YGK +L GG+ Q K Sbjct: 103 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMK 162 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + ++ ++ LV+DEADRMLD+GF + + + +P R Sbjct: 163 LRKGVDVLVATPGRLLDLNRQNAVQLDQVQTLVLDEADRMLDLGFARELNAVFAALPVRR 222 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT TD+++ ++ L++P I V+ P++TA I +V T + +K + Sbjct: 223 QTLLFSATFTDDIRAMAAGILRDPVNISVSPPNATASKIRQ-WVVTVDKKNKPDLFMH-- 279 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + + ++ ++F + V L L+ G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 280 LVAGNNWRHALVFVKTRNGVDYLAAMLDAAGYAVDTIHGDKPQPARLRALERFKTGEVQM 339 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 340 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 399 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 400 AIEALIRQ 407 >gi|254229918|ref|ZP_04923321.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] gi|262394827|ref|YP_003286681.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|151937554|gb|EDN56409.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] gi|262338421|gb|ACY52216.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] Length = 402 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 150/362 (41%), Positives = 221/362 (61%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M + LGLS + AV GY KPT IQ K IP+VL+ ++ AQTGTGKTASFVLP+L Sbjct: 1 MPISKLGLSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R +IL PTRELA QV + E YGKN L + GG+ + Q + L Sbjct: 61 EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR++D + + + + +E+LV+DEAD+MLDMGFI I I +P Q Sbjct: 121 IEGVDIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDAIDKIVDCMPEHVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT+++ ++ +++N + +P+ I + S++ I+ T K +LL +L Sbjct: 181 SLLFSATLSNPVRDLAKNAIIDPEEITIAKHSASKSNIKQWI--TTVDKDMKSSLLSHML 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++F K L LEK+G A H +QR R +++ FK G IQ + Sbjct: 239 KEND-WSQVLVFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI ++ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 VATGVAARGIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|308172326|ref|YP_003919031.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus amyloliquefaciens DSM 7] gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus amyloliquefaciens DSM 7] Length = 511 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ ++ G+ + TPIQ +TIPL L DV G AQTGTGKTA+F +P++ Sbjct: 22 FQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-- 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK + +++ PTRELA QV++ K G++ V + GG Q + L++ Sbjct: 80 -EKMNPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 138 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR + +NN+ +V+DEAD ML+MGFI I++I S VP QTLL Sbjct: 139 PHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 198 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ P+ ++V T I+ ++ Q KK L +LL Q Sbjct: 199 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 256 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM L FKEG I+++VA+ Sbjct: 257 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 315 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAG+ G A T + + + AIE+ Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 375 Query: 363 LIEKKVDWL 371 ++K+D + Sbjct: 376 TTKRKMDRM 384 >gi|284035184|ref|YP_003385114.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74] gi|283814477|gb|ADB36315.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74] Length = 643 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/370 (39%), Positives = 229/370 (61%), Gaps = 11/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L +SP+++ AV D G++ P+PIQ + IP +L DV G AQTGTGKTA+F +P L + Sbjct: 33 FSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALDL 92 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ + R +TLIL PTRELA QVA+ +K K + + + GG E Q + L+ Sbjct: 93 ID---VQDRSVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKS 149 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH R L +NN++++++DEAD MLDMGF I++I +P RQT+ Sbjct: 150 GVHIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTI 209 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 LFSATM+ + ++++ F ++P ++V T IE + V + A+ C L+ Sbjct: 210 LFSATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMY- 268 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +K ++FCN K+ V + L+ +G+ +HG++ Q R ++S F+ GT ++ Sbjct: 269 ----DLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNIL 324 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV V NFD+P E Y+HRIGRTGRAG+ G+AF+ V +++ Sbjct: 325 VATDVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFRE 384 Query: 360 IEKLIEKKVD 369 I+ + KV+ Sbjct: 385 IQTYTKVKVE 394 >gi|171319485|ref|ZP_02908588.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] gi|171095294|gb|EDT40280.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] Length = 481 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 154/366 (42%), Positives = 222/366 (60%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + D Y PTP+Q+K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++++G A R L+L PTRELA QV +F YGK +L GG+ Q K Sbjct: 61 QRLVQQGSAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + +E LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT TD+++ ++ + L++P I V+ P+ TA I+ A K L L Sbjct: 181 QTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQW--AVTVDKRNKPDLFMHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +++ + ++F + V L L++ G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 239 V-AENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIEALI 363 >gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor] gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor] Length = 673 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 225/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G +++ VL AG+ PTPIQ ++ P+ ++ D+ +A+TG+GKT ++LP Sbjct: 157 MTFQSTGFPSEILREVLQAGFSAPTPIQAQSWPIAIKGRDIVAVAKTGSGKTLGYLLPGF 216 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ + R P L+L PTRELA Q+ D K+G++ ++ L GG P Q ++L Sbjct: 217 ILLKRLQHNSREGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLREL 276 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGADV++ TPGR+ D K+ + + LV+DEADRMLDMGF P I+ I +P RQ Sbjct: 277 ERGADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQ 336 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTA--ETIEHCFVATYAQYSKKCALLQ 236 TL+++AT E+++++ + L NP ++ + NT A +H V + + S++ L Sbjct: 337 TLMYTATWPKEVRRIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRR---LD 393 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L+SQD IIFC+ K+ L +L +Q + AIHG+ Q R +L++F+ G Sbjct: 394 QILRSQDPGSKIIIFCSTKRMCDQLARNLSRQ-YGASAIHGDKSQSERDSVLNDFRSGRC 452 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T +D K+ Sbjct: 453 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSKY 512 Query: 357 IDAIEKLIE 365 + K++E Sbjct: 513 ASDLVKILE 521 >gi|332971571|gb|EGK10521.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330] Length = 481 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 219/368 (59%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L ++ A+ AGY PTPIQ++ IP L D+ AQTG+GKTA+F+LP L Sbjct: 25 FSDLNLDKNILSALKSAGYDSPTPIQMQAIPAALDNRDIMASAQTGSGKTAAFLLPSLQK 84 Query: 63 L-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L ++ + PR L+L PTRELAAQV N + Y +N L L+GG F Q K L Sbjct: 85 LTQRSEKSGKSPRVLVLTPTRELAAQVEKNAQIYSQNMKWLRSVTLVGGSSFGQQIKALS 144 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R DV++ TPGR++DH G++ + +E+LV+DEADRMLDMGFI I+ I + P RQT Sbjct: 145 RPIDVIVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPEDRQT 204 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + K++ +NP+ IE+ + E + K LL +L+ Sbjct: 205 LLFSATWDGAVGKLARKLTKNPEVIEIEREDKQGKIEEQLLYCDDKNH--KNRLLDHILR 262 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + +IF + K L L ++GF+ +HG++ Q R + L + ++G +++V Sbjct: 263 DAN-IDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILV 321 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A + + + I Sbjct: 322 ATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAISFAEVNEYMAVHKI 381 Query: 361 EKLIEKKV 368 E+ I K+ Sbjct: 382 ERYINHKL 389 >gi|320093766|ref|ZP_08025614.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979303|gb|EFW10798.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str. F0338] Length = 800 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 217/370 (58%), Gaps = 14/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL +++ AV D G+V PTPIQ + IP +L DV GIAQTGTGKTA+F LP+L I Sbjct: 52 FADLGLPDELLQAVTDMGFVTPTPIQAEAIPPLLDLRDVVGIAQTGTGKTAAFGLPLLAI 111 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 ++ A + + L+L PTRELA Q A E + + L V + GG P+ Q L+R Sbjct: 112 VD---ADEKAVQALVLAPTRELAMQSAAAIEDFAARTAELVVVPVYGGSPYGPQIGALKR 168 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D +G L ++ + +LV+DEAD ML MGF ++ I S P R T Sbjct: 169 GAQVVVGTPGRVIDLIEKGALDLSGVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTA 228 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++KV+ L++P ++ V+ SST +TI + Y K L ++L + Sbjct: 229 LFSATMPPAIEKVAREHLKDPVKVAVSEESSTVDTIHQTYAVV--PYKHKIGALSRVLAT 286 Query: 242 --------QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 Q+ I+F + +V + L +GF I G++ Q R +++ K Sbjct: 287 RAQHIAAGQEDADAAIVFVRTRVDVEEVSLELSGRGFRAAGISGDVAQTERERMVERLKS 346 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G++ ++VA+D+AARGLD+ + V NFDVP E Y+HRIGRTGRAGR G++ T + Sbjct: 347 GSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRSLTFFTPRE 406 Query: 354 IKHIDAIEKL 363 + IEKL Sbjct: 407 HTRLRRIEKL 416 >gi|167628080|ref|YP_001678580.1| DEAD/DEAH box helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668618|ref|ZP_04756196.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877152|ref|ZP_05249862.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167598081|gb|ABZ88079.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254843173|gb|EET21587.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 581 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 228/363 (62%), Gaps = 5/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGL+ ++ V+ GY PTPIQ IP +L DV G AQTGTGKTA+F LP++ Sbjct: 8 DFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +R R P+ L+L PTRELA QVA+ F+ + KN NL VA + GG + +Q + L+ Sbjct: 68 NMDL-ESRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ T GR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S V Q Sbjct: 127 QGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQR 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ + + +L+NP +I+V + TA T+ F+ +K L +LL+ Sbjct: 187 LLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKG--FRKIDALDRLLE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++T IIF K + + + +L+ G+ V AI+G++ Q R I+ F+ ++V Sbjct: 245 VEET-DGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+D+ + HV N+D+PN ++ Y+HRIGRTGRAGR G + +LV ++++ + + Sbjct: 304 ATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRTL 363 Query: 361 EKL 363 E+ Sbjct: 364 ERF 366 >gi|329295987|ref|ZP_08253323.1| ATP-dependent RNA helicase RhlE [Plautia stali symbiont] Length = 408 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 161/371 (43%), Positives = 237/371 (63%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ AV + GY +PTPIQ + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MSFDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL 60 Query: 61 TILEK--GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + AR R P R LIL PTRELAAQV +N +Y + N+ ++ GG+ Q Sbjct: 61 QRLSEKPAAARGRRPVRALILTPTRELAAQVGENVREYSQYLNMRSLVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVLI TPGR+LD ++ + ++ +EILV+DEAD MLDMGFI I+ + + +P Sbjct: 121 KLRGGVDVLIATPGRLLDLAHQNAVDLSQVEILVLDEADCMLDMGFIHDIRRVLAKLPAK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +DE++ ++E L NP+++EV ++ +E + + +K LL Sbjct: 181 RQNLLFSATFSDEIKALAEKLLTNPEQVEVARRNTASEQVSQQV--HFVDKKRKRELL-S 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ +D + ++F K +L L K G + AIHGN Q +R + L++FK G I+ Sbjct: 238 LMIGRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI ++ HV N+++PN AE+Y+HRIGRTGRA G A +LV ++ K + Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLL 357 Query: 358 DAIEKLIEKKV 368 IE+L+++++ Sbjct: 358 RDIERLLKREI 368 >gi|237713858|ref|ZP_04544339.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409233|ref|ZP_06085777.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645798|ref|ZP_06723482.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a] gi|294809471|ref|ZP_06768175.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC 1b] gi|229446014|gb|EEO51805.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352980|gb|EEZ02076.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638877|gb|EFF57211.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a] gi|294443343|gb|EFG12106.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC 1b] Length = 374 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 232/371 (62%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L ++ ++ A+ + GY PTPIQ K IP L + D+ G AQTGTGKTASF +P++ Sbjct: 1 MTFKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L+K AR + + LIL PTRELA Q+++ + Y K+ + ++ GG+ Q Sbjct: 61 QHLQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDL 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD ++G + ++ I+ V+DEADRMLDMGFI I+ I +P + Sbjct: 121 LRKGIDILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM D + ++++ L+NP +I + SST ++I+ + + + +K LL + Sbjct: 181 QTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQ--LVYFVEKKEKSQLLISI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L S+ ++ +IF K N + L K G AIHGN Q +R L NFK G ++ Sbjct: 239 L-SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+A+RG+DI ++ V N+D+P+ E Y+HRIGRTGRAG G A T ++E+ K ++ Sbjct: 298 MVATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVN 357 Query: 359 AIEKLIEKKVD 369 I+KL KK++ Sbjct: 358 DIQKLTGKKLN 368 >gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 605 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 230/371 (61%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSEPLLRALDELGYEKPTPIQAASIDPLMANKDILGQAQTGTGKTGAFALPLLNS 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ P+ L+L PTRELA QVA+ F Y K + V + GG + Q L R Sbjct: 68 ID---PTTNAPQILVLAPTRELAVQVAEAFASYSKFMKGMHVLPIYGGQSMQQQLNSLRR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH RG L + ++ +V+DEAD ML MGFI I+ I P RQ Sbjct: 125 GPQIIVGTPGRVMDHMRRGTLKLATLKAMVLDEADEMLKMGFIDDIEWILEHTPQERQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ +L NP +++ ++T ETIE FV +Q++K AL++ +L+ Sbjct: 185 LFSATMPEQIKRVANKYLDNPVHVKIAATTTTVETIEQRFVQV-SQHNKLEALVR-VLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 243 EKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361 Query: 362 KLIEKKVDWLN 372 + + ++ ++ Sbjct: 362 RATKSRISPMD 372 >gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2] Length = 449 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 224/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ G+ PTPIQ + IP L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV + YG++ L A+ GG+ Q K Sbjct: 61 QRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D ++ ++ L++P IEV+ ++ A+++ V +K L L Sbjct: 181 QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPV--DKKRKAELFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ + ++F +K+V L L++QG + +IHG+ Q +R++ L FK G + L Sbjct: 239 LQA-NRWHQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI ++ V NFD+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLA 357 Query: 359 AIEKLI 364 AIE LI Sbjct: 358 AIETLI 363 >gi|225452412|ref|XP_002273908.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1226 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 223/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G P+++ V AG+ PTPIQ ++ P+ LQ D+ IA+TG+GKT +++P Sbjct: 164 FESTGFPPEIIREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIH 223 Query: 63 LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L++ R +M P L+L PTRELA Q+ D K+G++ L+ L GG P Q + L+R Sbjct: 224 LKRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDR 283 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GAD+++ TPGR+ D ++ + + LV+DEADRMLDMGF P I+ I VP RQTL Sbjct: 284 GADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 343 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQL 238 +++AT E++K++ + L NP ++ + + E + + + Y + Y +K L+Q+ Sbjct: 344 MYTATWPKEVRKIAADLLVNPVQVNI---GNVDELVANKAITQYVEVLPYMEKHKRLEQI 400 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+SQ+ IIFC+ KK L +L + F AIHG+ Q R +L+ F+ G + Sbjct: 401 LRSQEPGSKIIIFCSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPV 459 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T A++D K+ Sbjct: 460 LVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYAS 519 Query: 359 AIEKLIE 365 + K++E Sbjct: 520 DLVKVLE 526 >gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus marisnigri JR1] gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri JR1] Length = 527 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 227/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L +SPK + A+ D G+ +PTPIQ+ TIP +L DV G AQTGTGKTA+F +P + Sbjct: 7 FQELNISPKTLRAIEDMGFEEPTPIQVSTIPAILDGRDVTGQAQTGTGKTAAFGVPAIER 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ G R + L+L PTRELA Q A+ F + K++ + + + GG P + Q + L+R Sbjct: 67 VDTGS---RETQVLVLSPTRELAIQTAEEFSRLAKHHQGINILPIYGGQPIDRQFRALQR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH +RG L ++++V+DEAD+MLDMGF I+ I P RQT+ Sbjct: 124 GVQIVVGTPGRVLDHLDRGTLSFGAVKVVVLDEADQMLDMGFREDIEKILDDTPRDRQTI 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ + ++S+ F +NP+ I V T IE ++ ++ + +L +LL Sbjct: 184 LFSATLPKPILEISKKFQKNPEFISVARKEVTVPQIEQLYLEVRSR--DRLEILTRLLDM 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D +IF N K+ V +L L+ +G+ +HG++ Q R ++++ F+ G+I ++VA Sbjct: 242 YDPDLT-LIFSNTKRGVDDLTTHLQARGYFAEGLHGDMKQTLRDRVMAKFRAGSIDILVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV V N+DVP E YIHRIGRT RAGR G+A T V ++ + I+ Sbjct: 301 TDVAARGIDVEDVDLVINYDVPQDIEYYIHRIGRTARAGRTGRAVTFVGPKEYFKLRTIQ 360 Query: 362 KLIEKKV 368 + K+ Sbjct: 361 NYTKIKI 367 >gi|170717335|ref|YP_001784445.1| DEAD/DEAH box helicase domain-containing protein [Haemophilus somnus 2336] gi|168825464|gb|ACA30835.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336] Length = 601 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 236/369 (63%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV + G+ P+PIQ IP +L HDV G+AQTG+GKTA+F LP+L Sbjct: 8 FNDLGLPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLLAK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E++ K + + + L GG ++ Q + L++ Sbjct: 68 IDTNE---KYPQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLRALKQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++N++ +V+DEAD ML MGFI ++ + + +P QT Sbjct: 125 GAQVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++++ F+ NP+ +++ + TA I + C+ Y + +K L + L+ Sbjct: 185 LFSATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCW---YVRGFRKNEALLRFLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 242 VED-FDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V ++ + + I Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPKERRLLGNI 360 Query: 361 EKLIEKKVD 369 E+L++K ++ Sbjct: 361 ERLMKKAIE 369 >gi|227495476|ref|ZP_03925792.1| superfamily II helicase [Actinomyces coleocanis DSM 15436] gi|226831023|gb|EEH63406.1| superfamily II helicase [Actinomyces coleocanis DSM 15436] Length = 616 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 225/372 (60%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L V+ A+ + G+ PTPIQ + IP +L+ D+ GIAQTGTGKTA+F LPML Sbjct: 7 FADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLPMLAH 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ G V+ ++L PTRELA Q A E + + + V + GG + Q K L+ Sbjct: 67 IDPGFNAVQ---AIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGLKS 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179 GA V++ TPGR++D +G L +NN+ +LV+DEAD ML MGF ++ I + +P + R Sbjct: 124 GAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGKRI 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM D +Q+V++ L +P RIEV SST E I + + K L ++L Sbjct: 184 TALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVV--PFKHKLGALGRVL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++D I+F + + + + +GF+ AI G++ Q R +I+S ++G++ ++ Sbjct: 242 ATRDE-DAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ +G V NFDVP E Y+HR+GRTGRAGR G++ T ++ + Sbjct: 301 VATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRLRQ 360 Query: 360 IEKLIEKKVDWL 371 IEKL K++ + Sbjct: 361 IEKLTGTKMEEI 372 >gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 634 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 227/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 11 FADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + P+ L+L PTRELA QVA+ F+KY + V + GG P+ Q L+R Sbjct: 71 ADLNQVK---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 128 GVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P + + ++T+ I + + K L ++L+ Sbjct: 188 LFSATMPPAIRRIAQTYLKDPAEVIIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEV 245 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF K L L+ +G + AI+G++ Q +R K ++ K+G + ++ Sbjct: 246 EPFDGM---IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A V + + + Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRS 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATRQPIEEMQ 375 >gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT] gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT] Length = 528 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 228/369 (61%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L +S ++ A+ D G+ +P+PIQ K IP +L D+ G AQTGTGKTA+F +P L Sbjct: 4 IKFENLPISDEIKSAIADMGFEEPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPAL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ++ +++ ++L PTRELA Q K GK L V + GG P + Q K L Sbjct: 64 DTIDLNNRNLQI---MVLCPTRELAIQATQEITKLGKYKKGLNVLAIYGGQPIDRQIKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG ++I TPGR++DH NR L +NI+++V+DEAD MLDMGF I+ I VP RQ Sbjct: 121 KRGVQIVIGTPGRVIDHINRKTLKTDNIKMVVLDEADEMLDMGFRDDIETIIQSVPENRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++S+ + + I+V T IE ++ + K +L +L+ Sbjct: 181 TILFSATMPKAIVELSKKYQTKAEFIKVVHRQLTVPNIEQRYIEVKENF--KIEVLSRLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ K +IFCN KK V + L+ +G+ +HG++ Q R +++S F+ GTI+++ Sbjct: 239 DMRNP-KLSVIFCNTKKRVDEVVSELQSRGYFAEGLHGDMKQPQRDRVMSKFRNGTIEIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G AFT VA + ++ + Sbjct: 298 VATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAMRKLRD 357 Query: 360 IEKLIEKKV 368 IE+ + K+ Sbjct: 358 IERYTKTKI 366 >gi|154684961|ref|YP_001420122.1| YdbR [Bacillus amyloliquefaciens FZB42] gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42] Length = 511 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ ++ G+ + TPIQ +TIPL L DV G AQTGTGKTA+F +P++ Sbjct: 22 FQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-- 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK + +++ PTRELA QV++ K G++ V + GG Q + L++ Sbjct: 80 -EKMNPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 138 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR + +NN+ +V+DEAD ML+MGFI I++I S VP QTLL Sbjct: 139 PHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSDHQTLL 198 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ P+ ++V T I+ ++ Q KK L +LL Q Sbjct: 199 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ 256 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM L FKEG I+++VA+ Sbjct: 257 -SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 315 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAG+ G A T + + + AIE+ Sbjct: 316 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 375 Query: 363 LIEKKVDWL 371 ++K+D + Sbjct: 376 TTKRKMDRM 384 >gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius DSM 11571] Length = 536 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 145/366 (39%), Positives = 235/366 (64%), Gaps = 11/366 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L +SP+++ A+ D G+ +PTPIQ ++IPL+L DV G AQTGTGKTA+F +P++ Sbjct: 5 LKFNELNISPEILRAIEDMGFEEPTPIQQRSIPLILSGRDVTGQAQTGTGKTAAFAIPLI 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 +E + V+ +++L PTREL Q+++ F + K ++ V + GG E Q +L Sbjct: 65 EKIEPEKCSVQ---SIVLSPTRELTIQISEEFNRLLKYRKDIRVLPVYGGQAIERQLHEL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G ++I TPGR++DH RG L ++ I+ +V+DEAD+ML+MGF ++ I S P RQ Sbjct: 122 KKGVHIIIGTPGRVMDHMKRGTLSLSGIKTVVLDEADQMLEMGFREDMEEILSKAPGERQ 181 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + K+S++F + P+ + +N T IE ++ + K +L +L+ Sbjct: 182 TILFSATMPKPILKISKSFQKKPEFVTINPGQLTVPLIEQKYLEVREK--DKLEVLCRLI 239 Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 S D +IFCN KK V L L +G+ +HG++ Q+ R +++S F+ G+I Sbjct: 240 DINSSDL---SMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSID 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+DI D+ V+N+DVP E YIHRIGRTGRAG+ G ++T V+ ++I + Sbjct: 297 ILIATDVAARGIDIDDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMSYTFVSPKEIYKL 356 Query: 358 DAIEKL 363 I+K+ Sbjct: 357 RMIKKI 362 >gi|113460849|ref|YP_718916.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT] gi|112822892|gb|ABI24981.1| ATP-dependent RNA helicase CsdA [Haemophilus somnus 129PT] Length = 601 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 236/369 (63%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV + G+ P+PIQ IP +L HDV G+AQTG+GKTA+F LP+L Sbjct: 8 FNDLGLPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLLAK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E++ K + + + L GG ++ Q + L++ Sbjct: 68 IDTNE---KYPQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLRALKQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++N++ +V+DEAD ML MGFI ++ + + +P QT Sbjct: 125 GAQVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++++ F+ NP+ +++ + TA I + C+ Y + +K L + L+ Sbjct: 185 LFSATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCW---YVRGFRKNEALLRFLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 242 VED-FDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V ++ + + I Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPKERRLLGNI 360 Query: 361 EKLIEKKVD 369 E+L++K ++ Sbjct: 361 ERLMKKAIE 369 >gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp. JS614] gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614] Length = 589 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 146/360 (40%), Positives = 220/360 (61%), Gaps = 10/360 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS +V+ A+ D GY KP+ IQ TIP +L DV G+AQTGTGKTA+F LP+L+ Sbjct: 16 FADLGLSDQVLKALADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPILSR 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + P+ L+L PTRELA QV + FE+Y + + V + GG + Q L R Sbjct: 76 LDLTQT---TPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGGQGYGVQLSALRR 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGRI+DH +G L ++ + LV+DEAD ML+MGF ++ I + P + Sbjct: 133 GVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILADTPDDKNVA 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++S+ +L +P I V ++TA I ++ Y +K L ++L+ Sbjct: 193 LFSATMPAQIRRISKKYLDDPAEITVKGKTATASNITQRYLTV--SYPQKVDALTRILEV 250 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + I+F K L L +G S AI+G++ Q R + ++ K G + ++VA Sbjct: 251 EN-FEGMIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVA 309 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A + V + +KHI+ Sbjct: 310 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHIE 369 >gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis HTCC2601] gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. HTCC2601] Length = 430 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 146/375 (38%), Positives = 226/375 (60%), Gaps = 5/375 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL+P + A+ G+ +PTPIQ + IPL L+ HDV G+AQTGTGKT +F LP++ Sbjct: 3 DFDMLGLAPTLSEALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLID 62 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + G+ + + L+L PTREL Q+AD+ + L V ++GG Q L Sbjct: 63 GLLAQPGKPAPKTVKALVLAPTRELVNQIADSLRQLTDGTKLRVGTVVGGQSINRQINFL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR++D +R + ++ + LV+DEAD+MLDMGFI ++ I + RQ Sbjct: 123 SRGTDILVATPGRLIDLMDRKAVDLSTVRQLVLDEADQMLDMGFIHALRRIAPQLGTPRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM +++++S +L NP+R++V+ P A+ I + + K + L++LL Sbjct: 183 TMLFSATMPKQMEELSSAYLTNPRRVQVSPPGKAADKITQSV--HFVDKAGKPSKLRELL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D ++F K L L G++ +IHGN Q R + + F++G I ++ Sbjct: 241 GRDDESLT-LVFARTKHGAERLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGDINVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP V +V N+D+P +NY+HRIGRT RAGR G+A A ++ + Sbjct: 300 VATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQ 359 Query: 360 IEKLIEKKVDWLNGD 374 I+KL++ + +GD Sbjct: 360 IQKLMKIDIPVASGD 374 >gi|325106943|ref|YP_004268011.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305] gi|324967211|gb|ADY57989.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis DSM 5305] Length = 399 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 145/384 (37%), Positives = 236/384 (61%), Gaps = 8/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLSP+ V + GY P+PIQ IP L+ D G +QTGTGKTA+F++P+L + Sbjct: 19 FADLGLSPETVEHLKSVGYEHPSPIQRDFIPPALKGVDCLGQSQTGTGKTAAFMMPVLEL 78 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++ + P+ L+L PTREL+ QVA +K + L +A+++GG P +AQ +K+ERG Sbjct: 79 LKEQQEE---PQALVLCPTRELSEQVAVEAQKISRFSKLEIAVVVGGRPLKAQMQKIERG 135 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR++D F R L + NI + V+DEADRMLD+GF P ++ I P RQTLL Sbjct: 136 VDVVVGTPGRVIDLFKRKSLSLKNIRLAVLDEADRMLDIGFRPDMEFILKQCPKERQTLL 195 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SAT+ E+++++ F+++P RI++ + TA+ +E F T ++ K L++ L+Q + Sbjct: 196 LSATLPSEVERLANRFMKDPVRIDIEPQNVTADRVEQ-FYCTVDEHRKLQLLIKLLVQEK 254 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+FC K+ L + + + V +HG++ Q R +++ F+ G +++++A+ Sbjct: 255 P--KQAIVFCRTKRKADQLYNKFQTRLDGVETLHGDLPQSKRDRVMKQFRAGKVRMLIAT 312 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH--GKAFTLVAKEDIKHIDAI 360 D+ RG+D+ + H+ N+D+P +++Y+HRIGR GR G+AFT V + + I Sbjct: 313 DIVGRGIDVGGISHIINYDIPEHSDDYVHRIGRAGRLSSEFSGRAFTFVTQGQGNELTKI 372 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E L+ K + D + P E+ Sbjct: 373 ELLVNKLIPEYKLDGLETHTPRER 396 >gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp. PCC 7822] gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822] Length = 482 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 224/369 (60%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS V + G+ PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP+L Sbjct: 3 ISFKNLGLSDARVQHLESIGFTNPTDIQQKAIPLLLEGHDVVGQSQTGTGKTAAYSLPLL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ R + LIL PTRELA QVA + + + L + + GG + Q + LE Sbjct: 63 ERIDR---HSRSVQALILTPTRELAQQVAQAIKDFVDDRRLFILTVYGGQSIDRQIRSLE 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D R KL ++ +++ V+DEAD ML MGFI ++ I P TRQT Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLSLDELQMAVLDEADEMLSMGFIDDVKKILQQTPSTRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM E++++ + FL++P + +T E I+ +SK A LQ +L+ Sbjct: 180 ACFSATMPPEIKRLIDQFLKSPVVVSATQHEATPERIDQHIYMVPRGWSKLKA-LQPILE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D ++ IIF K+ L L++ G V HGN+ Q R +++ F+EG I+L+V Sbjct: 239 IEDP-ESAIIFVRTKQTATELTGKLQESGHHVDEYHGNLSQAQRERLVQRFREGKIKLVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV NFD+P+ E YIHRIGRTGRAG+ G A +L+ D + + I Sbjct: 298 ATDIAARGLDVEDLSHVINFDLPDNTETYIHRIGRTGRAGKTGTAISLIEPIDRRMLRQI 357 Query: 361 EKLIEKKVD 369 E + ++D Sbjct: 358 EHRVGHRLD 366 >gi|326801270|ref|YP_004319089.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21] gi|326552034|gb|ADZ80419.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21] Length = 442 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 229/370 (61%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D + +++ A+ DA Y +PT IQ K I +L DV GIAQTGTGKTA++VLP+ I Sbjct: 5 FEDFKFNRQILNAIADAEYKEPTAIQQKAITPILAGQDVMGIAQTGTGKTAAYVLPI--I 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ A+ PR LIL PTRELA Q+ +N + + K +L +L GG+ + Q + LE+G Sbjct: 63 MKLKYAQGSDPRALILSPTRELAMQIEENIQLFAKYTDLRTVVLYGGLGPKQQIEALEKG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+L+ TPGR LD + + I++LV+DEAD+M+DMGFI I I ++P RQ LL Sbjct: 123 VDILVATPGRFLDLYLAEHINTKQIKLLVMDEADKMMDMGFIGKIHRILEVIPRKRQNLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQ 240 FSATM++ + K++ +FL P +EV+ ++ A T+ FV K LLQ LL+ Sbjct: 183 FSATMSELVHKIAGDFLAFPTIVEVSPQATPANTVSQQLYFVPN---TKTKINLLQYLLK 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + IIF K N+ H L ++ V IH N Q +R+ ++ FKEG++++ Sbjct: 240 NDEDFHRLIIFSKTKTIADNIYHFLSRKYGEDEVRVIHANKGQNTRINSINAFKEGSVRI 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ DV HV NFD+P E+Y+HRIGRTGRA + G A ++ + +I Sbjct: 300 LVATDVAARGLDVSDVSHVINFDIPIVIEDYVHRIGRTGRATKSGIAISMCTPAEAYYIT 359 Query: 359 AIEKLIEKKV 368 IEKLI +++ Sbjct: 360 KIEKLIRQQI 369 >gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 599 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 144/374 (38%), Positives = 229/374 (61%), Gaps = 11/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF L L+ ++ A+ D GY PTPIQ +TIPL+L+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MDFLGLQLAEPLMRALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ A P+ L+L PTRELA QVA+ F++Y ++ V + GG + Q + L Sbjct: 61 SNIDLEHAE---PQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVPIYGGQDYGIQLRML 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG +++ TPGR++DH RG L + +++ LV+DEAD ML MGFI ++ I P RQ Sbjct: 118 RRGVHIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPKGRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM ++++++ +L NP + + T ++T +TI + S K +L ++L Sbjct: 178 VALFSATMPPVIRRIAQKYLHNPAEVTIQTKTTTVDTIRQRYWIVGG--SHKIDILTRIL 235 Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + D M +IF K + L L+ +G+ A++G++ Q R + + K G + Sbjct: 236 EVEPFDGM---LIFVRTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNGALS 292 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + + Sbjct: 293 IVIATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRAGDAILFVSPREKNML 352 Query: 358 DAIEKLIEKKVDWL 371 +IE+ +++ + Sbjct: 353 YSIERATHSRIELM 366 >gi|297828586|ref|XP_002882175.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp. lyrata] gi|297328015|gb|EFH58434.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp. lyrata] Length = 625 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 222/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G +++ VL+AG+ PTPIQ ++ P+ +Q D+ IA+TG+GKT +++P Sbjct: 164 MSFEATGFPSELLREVLNAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 223 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L++ R RM P L+L PTRELA Q+ + K+G++ ++ L GG P Q + L Sbjct: 224 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDL 283 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD+++ TPGR+ D ++ + I LV+DEADRMLDMGF P I+ I +P RQ Sbjct: 284 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 343 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQ 236 TL+++AT ++K++ + L NP ++ + + +H V + ++ L+ Sbjct: 344 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR---LE 400 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L+SQ+ IIFC+ K+ L +L +Q F AIHG+ Q R +L+ F+ G Sbjct: 401 QILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRT 459 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLD+ D+ V N+D PN E+Y+HRIGRTGRAG G+AFT +D KH Sbjct: 460 PVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKH 519 Query: 357 IDAIEKLIE 365 + K++E Sbjct: 520 ASDLIKILE 528 >gi|206579682|ref|YP_002236428.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342] gi|288933410|ref|YP_003437469.1| DEAD/DEAH box helicase [Klebsiella variicola At-22] gi|206568740|gb|ACI10516.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342] gi|288888139|gb|ADC56457.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22] Length = 643 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 233/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 ID---PELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|170701192|ref|ZP_02892163.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] gi|170133898|gb|EDT02255.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] Length = 542 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 221/371 (59%), Gaps = 15/371 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + D Y PTP+Q+K IP VL DV AQTGTGKTA F LP+L Sbjct: 62 MSFASLGLIAPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 121 Query: 61 -------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 ++ RARV L+L PTRELA QV +F YGK +L GG+ Sbjct: 122 QRLVQHGPVVSSNRARV-----LVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSIN 176 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q KL +G DVL+ TPGR+LD + + + +E LV+DEADRMLD+GF + + + Sbjct: 177 PQMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAA 236 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQTLLFSAT TD+++ ++ + L++P I V+ P+ TA I+ A K Sbjct: 237 LPVQRQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTASKIKQW--AVTVDKRNKPD 294 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L L+ +++ + ++F + V L L++ G++V IHG+ Q +R++ L FK Sbjct: 295 LFMHLV-AENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKT 353 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +Q++VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ Sbjct: 354 GEVQMLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADE 413 Query: 354 IKHIDAIEKLI 364 + AIE LI Sbjct: 414 APQLAAIEALI 424 >gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 525 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 224/370 (60%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL +V A+ D G+ KP+ IQ ++IP+ L D+ G AQTGTGKTA++ LP++T Sbjct: 6 FATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIITK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + R ++LIL PTRELA QV + ++ K + + GG + Q + L +G Sbjct: 66 MSDNRG----IKSLILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQIRALRKG 121 Query: 123 -ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGRILD R L + +IE LV+DEAD ML+MGFI IQ I S P RQTL Sbjct: 122 DVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQTL 181 Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKK--CALLQQL 238 LFSATM D + K+++ +++ + K + + S T IE + ++ + C LL Sbjct: 182 LFSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDL- 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 D + IIFC K+ V L L+ +G+ V +HG++ Q R+ L+ FKEGT+ L Sbjct: 241 ----DNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNL 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ V HVFN+D+P E+Y+HRIGRTGRA + G A++LV +D + Sbjct: 297 LIATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLK 356 Query: 359 AIEKLIEKKV 368 I+ + + + Sbjct: 357 QIQNVTKSSI 366 >gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] Length = 529 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 150/383 (39%), Positives = 236/383 (61%), Gaps = 13/383 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L ++ A+ D G+ +P+PIQ IP VL D+ G AQTGTGKTA+F +P++ Sbjct: 4 FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPLVEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + RV+ ++L PTRELA QVA + K + + GG Q + L +G Sbjct: 64 ITPAN-RVQ---AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALRQG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH R L ++++ LV+DEAD MLDMGFI I+ I + +P RQTLL Sbjct: 120 VQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIINHMPDERQTLL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+++++ +++ P+ I V+ TA IE + + + K L ++L S+ Sbjct: 180 FSATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFDR--NKVESLCRILDSE 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++ GIIFC K+ V L L+ +G+ +HG++ Q R K+++ F+EG+I+ ++A+ Sbjct: 238 D-VELGIIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFLIAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+D+ +V HV N+D+P +E+Y+HRIGRTGRAGR G A TLV +++ + I+K Sbjct: 297 DVAARGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMFIQK 356 Query: 363 LIEKKVDWLNGDLSSLNPPLEKI 385 + +V LS P LE++ Sbjct: 357 QTKAQV------LSRNVPSLEEV 373 >gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii ATCC 33806] gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii ATCC 33806] Length = 715 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 150/398 (37%), Positives = 241/398 (60%), Gaps = 25/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL VV AV + G+ P+PIQ +TIP++L HDV G+AQTGTGKTA+F LP+L++ Sbjct: 81 FDTLGLPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSL 140 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120 ++ A +R P+ LIL PTRELA QVAD+F+ + + + +++L GG + Q L Sbjct: 141 ID---AEIRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLR 197 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR++DH +G L ++ + LV+DEAD ML+MGF ++ I + P +Q Sbjct: 198 RGAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEEKQV 257 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++S+ ++ +P I+V + + T I F+ + K L ++L+ Sbjct: 258 ALFSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFL--NVAHRNKLDALTRILE 315 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K L L +GF+ AI+G+I Q+ R + + K+G + ++V Sbjct: 316 VTE-FEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILV 374 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 375 ATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNI 434 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID---IAQHNHARK 395 E+ + N PL++++ + + N +RK Sbjct: 435 ER--------------ATNAPLQEMELPTVDEVNESRK 458 >gi|167584411|ref|ZP_02376799.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia ubonensis Bu] Length = 481 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 221/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ V D Y PTP+Q+K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIDPLLRNVQDLDYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F YGK +L + GG+ Q K Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRLLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++ ++ L+ P +I V+ P++TA I+ V K L L Sbjct: 181 QTLLFSATFSDDIRAMAAGILRGPVKISVSPPNATAGKIKQWVVPV--DKRNKPDLFMHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + D K+ ++F +K V L L++ G++V IHG+ Q +R++ L FK G + + Sbjct: 239 VAEND-WKHALVFVKTRKGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVHM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDINGLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 358 AIEALIRQ 365 >gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp. IMCC9063] gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp. IMCC9063] Length = 558 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 229/364 (62%), Gaps = 9/364 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L L+ + +++ + PTPIQIK+IP++L++ D+ AQTGTGKTA+F +PM+ Sbjct: 3 NFQELNLNKNLNASLVKMKFDTPTPIQIKSIPIILEQKDILASAQTGTGKTAAFCIPMIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLE 120 ++ A ++ R +IL PTRELA QV D EK ++ ++ L+GG P Q ++L+ Sbjct: 63 MI----ATKKINRAIILVPTRELAKQVNDVIEKLLFQQSVIKSVCLVGGEPMNKQLRRLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+ DH R LL+N +++L++DE DRMLDMGF I I +P +QT Sbjct: 119 TKPQIVVGTPGRVNDHLKRKSLLLNKVDLLILDEMDRMLDMGFSIQIDEIIKFLPKQKQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSAT+ ++++S+ +L N +R+ V ++T TI+ V Q K L++Q+ Sbjct: 179 LMFSATIAPSIERLSKKYLNNAERVSVAAANATLITIKQE-VINLRQEDKYNTLVEQVKT 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++F K N L +LEK+GF ++HGN+ Q R ++++ F+ I ++V Sbjct: 238 KHGST---LVFVKTKHNAKKLAKNLEKEGFESDSLHGNLRQNKRNQVIAKFRANKIHVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP + HV NFD+P +AE++IHR+GRTGRAG G A++ V D + I Sbjct: 295 ATDIAARGLDIPHIEHVVNFDLPQQAEDFIHRMGRTGRAGASGTAWSFVTPSDKRKWHEI 354 Query: 361 EKLI 364 EK++ Sbjct: 355 EKIL 358 >gi|161506849|ref|YP_001576803.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC 4571] gi|160347838|gb|ABX26512.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC 4571] Length = 503 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 239/370 (64%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +I +K +A + + +I+EPTRELA Q + + G++ + V ++ GG Q + L Sbjct: 61 QSIDKKEKAIQAIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIRRQIRSL 120 Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++ A +L+ TPGR+LDH RG + ++ + +V+DEAD MLDMGFI I++I + Sbjct: 121 KQHAPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM + ++ E F+++P +++ TA+ I+ FV A+ S+K ++ +L Sbjct: 181 QTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVR--AKESEKFDIMCRL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + + Sbjct: 239 IDVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 298 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMR 357 Query: 359 AIEKLIEKKV 368 IE+L +KK+ Sbjct: 358 TIEQLTKKKM 367 >gi|186473980|ref|YP_001861322.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia phymatum STM815] gi|184196312|gb|ACC74276.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum STM815] Length = 481 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 225/373 (60%), Gaps = 11/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL +++ V D Y PTP+Q+K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIDRLLRNVQDLHYQTPTPVQVKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +++ G A RVR+ L+L PTRELA QV +F YGK +L GG+ Q Sbjct: 61 QRLVQHGPAVSSNRVRV---LVLVPTRELAEQVLQSFVVYGKGLDLRFLAAYGGVSINPQ 117 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P Sbjct: 118 MMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALP 177 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT +D+++ ++ NFL+ P I V+ P++TA I V K L Sbjct: 178 AQRQTLLFSATFSDDIRAMAANFLRGPVHISVSPPNATASKIRQWVVPV--DKRNKPDLF 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +++ + ++F + V L L++ G++V IHG+ Q +R++ L FK G Sbjct: 236 MHLV-AENNWDHALVFVKTRTGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGQ 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI + V N D+P A++Y+HRIGRTGRAG G A +LV ++ Sbjct: 295 VHMLVATDVAARGLDIDHLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAP 354 Query: 356 HIDAIEKLIEKKV 368 + AIE LI + + Sbjct: 355 QLAAIEALIRQTL 367 >gi|260102329|ref|ZP_05752566.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus helveticus DSM 20075] gi|260083862|gb|EEW67982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus helveticus DSM 20075] gi|328463453|gb|EGF35104.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC 5463] Length = 503 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 239/370 (64%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL+ ++ A+ +G+ + TPIQ +TIPL LQ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +I +K +A + + +I+EPTRELA Q + + G++ + V ++ GG Q + L Sbjct: 61 QSIDKKEKAIQAIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSL 120 Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++ A +L+ TPGR+LDH RG + ++ + +V+DEAD MLDMGFI I++I + Sbjct: 121 KQHAPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM + ++ E F+++P +++ TA+ I+ FV A+ S+K ++ +L Sbjct: 181 QTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVR--AKESEKFDIMCRL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + Q ++F K+ V L L+ +G++ IHG++ Q RM +L F+EG + + Sbjct: 239 IDVQGP-DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HV+N+D+P ++Y+HRIGRTGRAG++G + T V +I ++ Sbjct: 298 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMR 357 Query: 359 AIEKLIEKKV 368 IE+L +KK+ Sbjct: 358 TIEQLTKKKM 367 >gi|254225316|ref|ZP_04918928.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51] gi|125622157|gb|EAZ50479.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51] Length = 397 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 154/373 (41%), Positives = 223/373 (59%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS +V V GY KPT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ +++P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK I+ + Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFKSAKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|148543481|ref|YP_001270851.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus reuteri DSM 20016] gi|184152890|ref|YP_001841231.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112] gi|227363631|ref|ZP_03847746.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri MM2-3] gi|227544701|ref|ZP_03974750.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri CF48-3A] gi|300909057|ref|ZP_07126520.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112] gi|325681826|ref|ZP_08161345.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A] gi|148530515|gb|ABQ82514.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM 20016] gi|183224234|dbj|BAG24751.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112] gi|227071342|gb|EEI09650.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri MM2-3] gi|227185302|gb|EEI65373.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri CF48-3A] gi|300894464|gb|EFK87822.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112] gi|324978917|gb|EGC15865.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A] Length = 498 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 143/363 (39%), Positives = 229/363 (63%), Gaps = 6/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ +GY + TPIQ +TIP+VL+ DV G AQTGTGKTA+F LP++ Sbjct: 1 MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ +I+ PTRELA Q + + GK+ ++ V ++ GG Q K L+ Sbjct: 61 ENVDTENLNIQ---AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +L+ TPGR+ DH NR + +++I+ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 118 QHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++ F+ +P+ + + T + ++ ++ A+ +K ++ +L+ Sbjct: 178 LLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYIR--ARDYEKFDIMTRLID 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F K+ V L L +G++ IHG++ Q R KI+ FK + ++V Sbjct: 236 VQDPDLT-IVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+P+ ++Y+HRIGRTGRAG HG + T V ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354 Query: 361 EKL 363 EKL Sbjct: 355 EKL 357 >gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 652 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 145/372 (38%), Positives = 227/372 (61%), Gaps = 7/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL +V+ A+ D GY KP+PIQ TIP++L+ DV G+AQTGTGKTA+F LP L+ Sbjct: 46 FTDFGLDGRVLAALKDVGYEKPSPIQAATIPVLLEGRDVVGLAQTGTGKTAAFALPALSR 105 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + A + + L+L PTRELA QVA+ F Y + N +V + GG + Q L R Sbjct: 106 MANLPA-TKDTQILVLAPTRELALQVAEAFSSYAAHMDNFSVLPVYGGSAYGPQLAGLRR 164 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH ++G L ++N++ LV+DEAD ML MGF ++ I + P +Q Sbjct: 165 GAQVVVGTPGRVIDHLSKGSLDLSNLQYLVLDEADEMLRMGFADDVEQILAETPEDKQVA 224 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++++ +L NP I V ++T E ++ + K + ++L+ Sbjct: 225 LFSATMPGQIRRIAKKYLNNPAEISVKAKTTTGENTRQRYLQVMGPH--KLDAMTRILEV 282 Query: 242 QDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +G+I F K L L+ +G+ AI+G+I Q+ R + + + G+I ++V Sbjct: 283 EDY--DGVIAFVRTKMATEELADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLV 340 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V N+D+P+ E+Y+HRIGRTGRAGR G A + + + AI Sbjct: 341 ATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAI 400 Query: 361 EKLIEKKVDWLN 372 EK + V+ ++ Sbjct: 401 EKATRQPVEQMH 412 >gi|254361250|ref|ZP_04977393.1| superfamily II helicase [Mannheimia haemolytica PHL213] gi|110735365|gb|ABG89253.1| ATP-dependent RNA helicase [Mannheimia haemolytica] gi|153092746|gb|EDN73789.1| superfamily II helicase [Mannheimia haemolytica PHL213] Length = 602 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 233/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL ++ AV + G+V P+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L++ PTRELA QVAD E++ KN + V + GG ++ Q + L Sbjct: 66 AQIDPTQ---RHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G+ V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P T Q Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPETHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+++P+ +++ +A IE + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNG-FRKNDALLRFL- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + IIF K +++ E+ G+ A++G++ Q++R + L + G + ++ Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N+D+P E+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359 Query: 360 IEKLIEKKVD 369 IE LI+K ++ Sbjct: 360 IENLIKKPIN 369 >gi|261492525|ref|ZP_05989078.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496800|ref|ZP_05993174.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307547|gb|EEY08876.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311684|gb|EEY12834.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 601 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 233/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL ++ AV + G+V P+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L++ PTRELA QVAD E++ KN + V + GG ++ Q + L Sbjct: 66 AQIDPTQ---RHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G+ V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P T Q Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPETHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+++P+ +++ +A IE + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNG-FRKNDALLRFL- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + IIF K +++ E+ G+ A++G++ Q++R + L + G + ++ Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N+D+P E+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359 Query: 360 IEKLIEKKVD 369 IE LI+K ++ Sbjct: 360 IENLIKKPIN 369 >gi|149275912|ref|ZP_01882057.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39] gi|149233340|gb|EDM38714.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39] Length = 443 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 158/403 (39%), Positives = 244/403 (60%), Gaps = 10/403 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + L+ +++ AV DAG+ TPIQ K I VL D+ GIA+TGTGKTA++VLP+L Sbjct: 5 FEEFNLNRQILNAVADAGFTVATPIQEKAIAPVLSGQDLFGIAETGTGKTAAYVLPILMQ 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ A+ R LIL PTRELA Q+ ++ + + +L ++ GGI + Q ++++ G Sbjct: 65 LK--YAQGDSARALILAPTRELAMQITEHIKVFSTYLDLRTVVIFGGIGPKTQIEQIKAG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR LD + G + ++ LV+DEAD+M+DMGFI I I +VP RQ LL Sbjct: 123 VDIIVATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRKRQNLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM+ +QK++ +FL++P +EV ++ A+T+ + K LLQ L+++ Sbjct: 183 FSATMSSLVQKIAGDFLKHPTIVEVAEQATPAQTVTQTLYEV-PNFKTKINLLQHLMKND 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K IIFC K N+ +E++ +V IH N Q +R+ +++FKEG I+++V Sbjct: 242 EEFKRVIIFCKTKTVADNIFSFIERRFGADAVRVIHANKGQNTRINSINDFKEGNIRVLV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RG+D+ +V HV NFDVP E+Y+HRIGRTGRA G A T + +I I Sbjct: 302 ATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRALSKGDALTFFTDAEKYYIKKI 361 Query: 361 EKLIEKKVDW--LNGDLSSLNPPLEK---IDIAQHNHARKNNP 398 EKLI +++ L ++ P E+ I+ A + RK +P Sbjct: 362 EKLIRQEIPVVPLPAEVFVEETPYEERQAINRAIDDQKRKEDP 404 >gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13] Length = 507 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 152/381 (39%), Positives = 231/381 (60%), Gaps = 8/381 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ ++ G+ + TPIQ +TIP+ L DV G AQTGTGKT +F LP+L Sbjct: 4 FKELGLSEDIMKSIDRMGFEEATPIQSETIPVALTGKDVIGQAQTGTGKTIAFGLPLLEN 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ ++ +++ PTRELA QVA+ K + V + GG Q + L++ Sbjct: 64 VDVTNESIQ---GIVIAPTRELAIQVAEEIYKASYHKRARVLSVFGGQDISRQIRSLKKN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR L + N+ +V+DEAD ML+MGFI I+ I + P +QTLL Sbjct: 121 PHIVVGTPGRLLDHINRKTLRLQNVNTVVLDEADEMLNMGFIEDIEKILAETPEKKQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++ ++E F+ P ++V T I+ +V + KK L +LL Q Sbjct: 181 FSATMPAPIRAIAERFMSEPVNVKVQAKELTISNIQQFYVEVPEK--KKFDTLTRLLDIQ 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIF K+ V L +L +G+S IHG++ Q RM +L FKEG+I ++VA+ Sbjct: 239 -SPELAIIFGRTKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSIDVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V+ ++ ++ +E+ Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAITFVSPREVSYLHHVER 357 Query: 363 LIEKKVDWLNGDLSSLNPPLE 383 + ++K+D L +L+ LE Sbjct: 358 VTKRKMDKLKA--PTLDEALE 376 >gi|196230330|ref|ZP_03129193.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus Ellin428] gi|196225927|gb|EDY20434.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus Ellin428] Length = 443 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 216/367 (58%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL P+++ A+ DAGY +PTPIQ IP +L DV GIAQTGTGKTA+FVLPML Sbjct: 1 MPFAALGLEPRLLSALKDAGYTEPTPIQGAAIPKILSGSDVIGIAQTGTGKTAAFVLPML 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + R R L+L PTRELAAQ+ +N Y + +A + GG+ Q + L Sbjct: 61 QLLANRPPVSGRKIRALVLAPTRELAAQIEENARAYARYVPFRMATIFGGVGERPQIQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +++I PGR+LD + +E LV+DEADRMLDMGF+P I+ I +P RQ Sbjct: 121 RDNVELIIACPGRLLDLMQQRHGDFTGLEFLVLDEADRMLDMGFLPDIRRIVKQLPRKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT++ E++ ++ FL NP ++V S+ AET+ Y L L Sbjct: 181 TLLFSATLSGEIEALTHEFLHNPATVQVGRRSNPAETVTQV---AYEVPKHLKLALLAAL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ M++ ++F K + LE G +H N Q R++ L+ FK G ++++ Sbjct: 238 LNEPGMESVLVFSRTKHGADRIARKLESSGIKSATLHSNRTQNQRLRALAAFKAGEVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D P E+Y+HRIGRTGRA G A + V ++ + + Sbjct: 298 VATDIAARGIDVDGISHVINYDFPMTNEDYVHRIGRTGRANAVGDALSFVCPDEHGDLRS 357 Query: 360 IEKLIEK 366 +E+ I + Sbjct: 358 LERFIGR 364 >gi|306840535|ref|ZP_07473294.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2] gi|306289550|gb|EFM60768.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2] Length = 549 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 156/386 (40%), Positives = 231/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ HD+ GIAQTG+GKTA+F LP+L Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGHDILGIAQTGSGKTAAFSLPILQK 162 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 340 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 341 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 400 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 458 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 459 AVERVTRSKLSIKDAPVKLAPAPVAK 484 >gi|94990733|ref|YP_598833.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270] gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270] Length = 539 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T +E +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVEQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|296159198|ref|ZP_06842024.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] gi|295890457|gb|EFG70249.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] Length = 481 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 223/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ V D Y PTP+Q K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F YGK +L GG+ Q K Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPVQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT TD+++ ++ L++P I V+ P++TA I +V T + +K + Sbjct: 181 QTLLFSATFTDDIRAMAAGILRDPLNISVSPPNATASKIRQ-WVVTVDKKNKPDLFMH-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +++ ++ ++F + V L L++ G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 238 LVAENNWRHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +V +D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVVTDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 358 AIEALIRQ 365 >gi|237730082|ref|ZP_04560563.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2] gi|226908688|gb|EEH94606.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2] Length = 642 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N DL Sbjct: 362 RTMKLTIPEVELPNADL 378 >gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305] gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis DSM 5305] Length = 475 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 152/370 (41%), Positives = 222/370 (60%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L + A+ Y PTPIQ +TIP +L D+ G AQTGTGKTA+F LP+L Sbjct: 4 FSDLNLIAPIQRAIKAQNYTTPTPIQAQTIPEILNGRDILGSAQTGTGKTAAFALPILDY 63 Query: 63 LEKGRARVR----MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L GR R P L+L PTRELA QV D+F YG++ + AL+ GG+ Q + Sbjct: 64 L--GRQNRRPIPNEPTVLVLVPTRELAIQVGDSFATYGRHLRVRHALIYGGVNQFRQVRD 121 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG +L+ TPGR+LD N+G + ++ +E+ +DEADRM+DMGF+P ++ I +P R Sbjct: 122 LNRGVHILVATPGRLLDLMNQGHIDLSRLELFAVDEADRMMDMGFLPDLKKIIREIPQER 181 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSAT+ ++ ++S L +P + ++ + E IE + Q SKK LL L Sbjct: 182 QSLFFSATLPPKINELSRELLTDPVSVTIDPEVRSVEAIEQSLIYV-DQQSKKDLLLDIL 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ + ++F K L L K G S AIHGN Q +R K L F+ +++ Sbjct: 241 --NEEGIGQTVVFTKTKFCANRLEEQLRKSGVSAIAIHGNKSQNARQKALLAFRNEKVKV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ V HV NF++P+ E+Y+HRIGRTGRAG G A + + + + Sbjct: 299 LVATDVAARGIDVDGVTHVINFELPHEPESYVHRIGRTGRAGASGIAISFCSNAERAELR 358 Query: 359 AIEKLIEKKV 368 AIE+ IE+KV Sbjct: 359 AIERQIEQKV 368 >gi|297569384|ref|YP_003690728.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925299|gb|ADH86109.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 612 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 224/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L L+P + AV + G+ PTPIQ ++IP +L D+ G AQTGTGKTA+F LP+L Sbjct: 11 LSFSQLPLAPAIHRAVDELGFETPTPIQAESIPPLLAGRDLLGQAQTGTGKTAAFSLPLL 70 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + LE + + P+ L+L PTRELA QVA+ + + ++ V L GG Q ++L Sbjct: 71 SQLEVDK---KYPQLLVLAPTRELALQVAEAMQSFARHLPGFQVLPLYGGQNMTLQLRRL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RGA V++ TPGRI DH RG L + + +V+DEAD ML MGFI ++ I P RQ Sbjct: 128 QRGAQVVVGTPGRIQDHLRRGTLRLERLSAVVVDEADEMLKMGFIDAVEQILEHAPKERQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM ++K++ L+NP I++ +++ I F A + K L +LL Sbjct: 188 VALFSATMPTAVRKIAHRHLKNPVEIKIKRTTTSMAAITQQFWAVKGLH--KLDALTRLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++ + ++F K V L LE +GF+ A++G++ Q+ R K + K G + ++ Sbjct: 246 EAEE-FEAVLVFVRTKVATVELAEKLEARGFAAAALNGDMTQQMREKTIEQVKSGALDIV 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+DVP E+YIHRIGRTGRAGR GKA V + + + A Sbjct: 305 VATDVAARGLDVARITHVINYDVPYDTESYIHRIGRTGRAGRQGKAIIFVTPRERRLLAA 364 Query: 360 IEKLIEKKV 368 IE+ +K+ Sbjct: 365 IEQASGQKI 373 >gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088] gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088] Length = 515 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 231/372 (62%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L + A+ D GY P+ IQ KTIP +L+ DV G AQTGTGKTA+F LP+L Sbjct: 10 FASLNLPAYLQKALDDVGYEVPSDIQTKTIPPLLEGCDVIGQAQTGTGKTAAFALPILAK 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R + + L+L PTRELA QVA+ F+ Y ++ VA + GG + Q K+LER Sbjct: 70 ID---CRKKQTQCLVLAPTRELAIQVAEAFQSYARHLPGFQVAPIYGGTDYRTQLKQLER 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +G L ++N+ LV+DEAD ML MGFI ++ + S +P RQ Sbjct: 127 GAQVIVGTPGRVMDHMRKGSLKLDNLAHLVLDEADEMLRMGFIDDVEWVMSQLPEKRQIA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++++ ++LQ+P+ I V + TA +I + ++ + A K L ++L+ Sbjct: 187 LFSATMPTAIRRIASDYLQDPQHITVTQKTVTATSIRQRVWMISGA---SKLDGLTRILE 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K L L+ +GF+ A++G++ Q +R +++S K+G + ++V Sbjct: 244 VED-FDGLIIFARTKIATTELADKLQARGFAAAALNGDMAQSAREQVISQLKKGRLDIVV 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P E Y+HRIGRTGRAGR G+A A + + + I Sbjct: 303 ATDVAARGLDVDRITHVVNYDIPQDPEAYVHRIGRTGRAGRKGEAILFAANREQRLLRMI 362 Query: 361 EKLIEKKVDWLN 372 E+ + ++ + Sbjct: 363 ERTTGQPIELMR 374 >gi|168185435|ref|ZP_02620070.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str. Eklund] gi|169296498|gb|EDS78631.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str. Eklund] Length = 476 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 229/364 (62%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F D LS +++ + GY PT +Q KTIP+VLQ D+ +QTG+GKTASF +P+ Sbjct: 1 MNFNDFKLSSEILKTIKMLGYKNPTEVQEKTIPIVLQGKDIIVKSQTGSGKTASFGIPLC 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK + + P+ LIL PTRELA Q+ ++ G+ + + G P Q +L+ Sbjct: 61 ---EKVKLENKKPQALILTPTRELAVQIKEDISNIGRFKKVKCVAVYGKEPVSIQKNQLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR DH +G L +++++ L+IDEAD+ML+MGFI +++I + R T Sbjct: 118 QRVHIVVGTPGRTFDHIQKGNLDLSDVKYLIIDEADKMLNMGFIDQVEDIIKRLSTDRIT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ + ++K+ + ++ NP++IE+ + T + IE + +SK+ L +++ Sbjct: 178 MLFSATLEERIEKLCKRYMNNPEKIEIKRENVTTDVIEQEYYK--VDHSKRFNTLTKVIY 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + IIFCN K V N+ + ++ +GF+ A+HG +DQ+ R+ +++FK G Q +V Sbjct: 236 AE-VPDSAIIFCNTKVEVGNVANKMKNEGFNAKALHGGMDQKDRLYTINDFKRGKFQFLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N++VP E Y+HRIGRTGRAG GK+ T V+ + + + I Sbjct: 295 ATDVAARGIDVEEITHVINYEVPVEKEGYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEI 354 Query: 361 EKLI 364 E+ I Sbjct: 355 EEYI 358 >gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873] gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873] Length = 528 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 150/367 (40%), Positives = 227/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL +S ++ A+ D G+ P+PIQ K IP +L D+ G AQTGTGKTA+F +P L Sbjct: 6 FEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ +++ ++L PTRELA Q K GK + V + GG P + Q K L+R Sbjct: 66 IDLDNKSLQI---MVLCPTRELAIQATQEVHKLGKYKKGINVLAVYGGQPIDRQIKALKR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH R L +NI+++V+DEAD MLDMGF I+ I +P RQT+ Sbjct: 123 GVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQAIPQNRQTI 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++S+ + N + I+V T IE ++ + + K +L +L+ Sbjct: 183 LFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEV--KENNKLEVLSRLIDM 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ K +IFCN KK V + L+ +G+ +HG++ Q R ++++ F+ GTI+++VA Sbjct: 241 RNP-KLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G AFT VA + I+ + IE Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDIE 359 Query: 362 KLIEKKV 368 + + KV Sbjct: 360 RYTKTKV 366 >gi|258405603|ref|YP_003198345.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797830|gb|ACV68767.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense DSM 5692] Length = 403 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 149/383 (38%), Positives = 221/383 (57%), Gaps = 9/383 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L K+ + G+ +PTPIQ + +PL L+ DV G+AQTGTGKTA+FVLP+L Sbjct: 1 MHFDAFSLHEKITTGIAACGFTQPTPIQAQALPLALEGKDVLGLAQTGTGKTAAFVLPIL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R RVR LI+ PTRELA Q + G++ L A + GG+ + Q K+ Sbjct: 61 QRLMSGPRRRVR---ALIVSPTRELAEQTVQVCNQLGRHTGLKAAAVYGGVGKKPQVDKI 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA++++ PGR+LDH + +E+LV+DEADRM DMGF+P I I S +P RQ Sbjct: 118 RSGAEIIVACPGRLLDHLTDRSFNLKQVEMLVLDEADRMFDMGFLPDIHRILSYLPAQRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM +++ ++E L +P + ++ +A I AQ+ K LL+ L Sbjct: 178 NMLFSATMPADIRALTEKLLVDPAEVRIDHEKPSA-NISQALYPVEAQH-KTPMLLKILE 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + ++F K L L+ G+ +HGN+ Q R ++ F+ G ++ Sbjct: 236 DEPDALT--LVFTKTKHGARKLAQKLKASGYKAADLHGNLSQAQRRTAMAGFRSGRFTIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + V NFD+P+ AENY HRIGRTGR R G A +L+A+ D+ + A Sbjct: 294 VATDIAARGIDVERIARVINFDMPDTAENYTHRIGRTGRIDRSGLAMSLIARGDMHLVRA 353 Query: 360 IEKLIEKKVDWLNGD-LSSLNPP 381 IE+ + K+++ D + L PP Sbjct: 354 IERNLGKRLERKTIDQMEHLAPP 376 >gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina ymp] gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp] Length = 447 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 225/368 (61%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + + Y PTP+Q + IP +L+ D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRTLTELDYQTPTPVQSQAIPAMLKGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV +F+ YG++ L+ + GG+ Q K Sbjct: 61 QRLTLEGPQVASNAVRALVLVPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + S +P R Sbjct: 121 LRKGVDVLVATPGRLLDLYRQNAVKFAQLQTLVLDEADRMLDLGFARELDELFSALPKRR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D +++++ L++P +EV+ ++ A++++ + +K L L Sbjct: 181 QTLLFSATFSDVIRQMAGELLRDPVSVEVSPRNAAAKSVKQWLIPV--DKKRKSELFLHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ + ++F +K V L L G S +IHG+ Q SR++ L FK G +Q+ Sbjct: 239 LQ-EKRWGQVLVFAKTRKGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFKAGEVQI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAVSLVCADEVELLA 357 Query: 359 AIEKLIEK 366 AIE+LI + Sbjct: 358 AIERLIRQ 365 >gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp. salmonicida A449] Length = 613 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 227/368 (61%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL+ V+ A+ D GY +P+PIQ IP ++ HD+ G AQTGTGKTA+F LP+L+ Sbjct: 10 FSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE G R + L+L PTRELA QVA+ ++Y K+ + V + GG +E Q + L R Sbjct: 70 LEAGN---RNTQVLVLAPTRELALQVAEACQRYAKHMPDFHVLPIYGGSSYETQTRALRR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D R L ++ ++ LV+DEAD ML MGFI + I P TRQ Sbjct: 127 GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D++++V++ L+ PK I++ + +STA TI + + K + +LL+ Sbjct: 187 LFSATMPDQIRRVAQKHLKQPKEIKIVSKTSTAPTIRQRYWQVTGLH--KLDAMTRLLEV 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++F K L L +G + A+HG+I Q+ R + + ++G + +++A Sbjct: 245 E-PYEAVLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A VA + + + AIE Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363 Query: 362 KLIEKKVD 369 + ++ Sbjct: 364 HATRQAIE 371 >gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 479 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 227/367 (61%), Gaps = 5/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS + + G+ PT IQ K IPL+L+ HD+ G++QTGTGKTA++ LP+L Sbjct: 5 FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ V+ LIL PTRELA QVA + + + L + + GG E Q + LE+G Sbjct: 65 MDTKNPNVQ---ALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEKG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++D +R KL + ++ +V+DEAD ML MGFI ++ I P TRQT Sbjct: 122 VQIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTAC 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++ + NFL++P + V+ P + IE ++ K +LQ LL+ Sbjct: 182 FSATMPREIRDLIANFLKSPISVTVSQPQAAPAKIEQKIYMIPRGWT-KLKVLQPLLEI- 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + +++ IIF K+ L L++ G +V HGN+ Q R +++ F+EG I+L+VA+ Sbjct: 240 EPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ ++ HV N+D+P+ AE YIHRIGRTGRAG+ G A +LV D + + IE+ Sbjct: 300 DIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQ 359 Query: 363 LIEKKVD 369 + ++++ Sbjct: 360 RLRQRLE 366 >gi|319899115|ref|YP_004159208.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73] gi|319403079|emb|CBI76634.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73] Length = 416 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 156/369 (42%), Positives = 230/369 (62%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+LGLS ++ + +AG KP IQ + IP++L+ HDV GIAQTG+GKT +F LP+L Sbjct: 9 FAELGLSSLLIKNLFNAGMSKPKLIQAQAIPVMLKGHDVLGIAQTGSGKTLAFSLPILNR 68 Query: 62 ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G R + R LIL PTRELA Q+ + K +L+ L++GG+ Q K++ Sbjct: 69 ILTLGDKRHPKTARALILVPTRELAVQIEEAISAVAKGTHLSTCLILGGMSRLIQIKRMA 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+LI TPGR++D + ++ V+DEADRMLDMGFI ++ I + + QT Sbjct: 129 KGVDILIATPGRLMDLIRSKYIDLSQSRFFVLDEADRMLDMGFISDVRQIANFLHKKCQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++N L+ P +IEV +TA +E V S+K ++L +LL Sbjct: 189 ALFSATMPKEVNVLADNLLKKPIKIEVVPQGTTA--VEITQVLYCVSTSEKKSVLSKLL- 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + I+F K ++ SL+K G+SV IHGN Q +R L +F+EG ++++V Sbjct: 246 TNPALASVIVFIRTKHGADSVARSLKKTGYSVATIHGNKSQNARQCALKDFREGLVRILV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359 A+D+ ARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G G A TL K + + A Sbjct: 306 ATDIVARGIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGDAITLFDEKVERARLSA 365 Query: 360 IEKLIEKKV 368 IE+LI K+ Sbjct: 366 IERLIRIKL 374 >gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC 14266] gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC 14266] Length = 721 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 150/398 (37%), Positives = 241/398 (60%), Gaps = 25/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL VV AV + G+ P+PIQ +TIP++L HDV G+AQTGTGKTA+F LP+L++ Sbjct: 74 FDTLGLPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSL 133 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120 ++ A +R P+ LIL PTRELA QVAD+F+ + + + +++L GG + Q L Sbjct: 134 ID---ADIRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLR 190 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR++DH +G L ++ + LV+DEAD ML+MGF ++ I + P +Q Sbjct: 191 RGAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEDKQV 250 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++S+ ++ +P I+V + + T I F+ + K L ++L+ Sbjct: 251 ALFSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFL--NVAHRNKLDALTRILE 308 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K L L +GF+ AI+G+I Q+ R + + K+G + ++V Sbjct: 309 VTE-FEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILV 367 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 368 ATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNI 427 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID---IAQHNHARK 395 E+ + N PL++++ + + N +RK Sbjct: 428 ER--------------ATNAPLQEMELPTVDEVNESRK 451 >gi|261342608|ref|ZP_05970466.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC 35316] gi|288315255|gb|EFC54193.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC 35316] Length = 629 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 228/364 (62%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 IDPD---LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 362 KLIE 365 + ++ Sbjct: 362 RTMK 365 >gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843] gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843] Length = 479 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 227/367 (61%), Gaps = 5/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS + + G+ PT IQ K IPL+L+ HD+ G++QTGTGKTA++ LP+L Sbjct: 5 FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ V+ LIL PTRELA QVA + + + L + + GG E Q + LE+G Sbjct: 65 MDTKNPNVQ---ALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEKG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++D +R KL + ++ +V+DEAD ML MGFI ++ I P TRQT Sbjct: 122 VQIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTAC 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++ + NFL++P + V+ P + IE ++ K +LQ LL+ Sbjct: 182 FSATMPREIRDLIANFLKSPISVTVSQPQAAPAKIEQKIYLIPRGWT-KLKVLQPLLEI- 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + +++ IIF K+ L L++ G +V HGN+ Q R +++ F+EG I+L+VA+ Sbjct: 240 EPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ ++ HV N+D+P+ AE YIHRIGRTGRAG+ G A +LV D + + IE+ Sbjct: 300 DIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQ 359 Query: 363 LIEKKVD 369 + ++++ Sbjct: 360 RLRQRLE 366 >gi|149196871|ref|ZP_01873924.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa HTCC2155] gi|149139981|gb|EDM28381.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa HTCC2155] Length = 537 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 144/361 (39%), Positives = 223/361 (61%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F LGL P + + G+ +P+PIQ + IP++L Q HD+ G AQTGTGKTA+F LP++ Sbjct: 4 FTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLPIVQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +E G ++ P+ LIL PTRELA QV + + + K +T L GG P Q + L++ Sbjct: 64 KIEPG---LKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKRALKK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR + GKL ++++E LV+DEAD ML+MGF+ ++ + P R L Sbjct: 121 GVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +FSATM L+K++E+++ N I+ + + T ETI+ Y + +K AL + + Sbjct: 181 MFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPE-NKFAALCRIMDLE 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D GIIFC K V + L +G++ IHG++ Q SR ++L F+ I L++A Sbjct: 240 KDFY--GIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ D+ H+ NF +P + E+Y+HRIGRTGRAG+ G A TL+ ++ + IE Sbjct: 298 TDVAARGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMSFIE 357 Query: 362 K 362 K Sbjct: 358 K 358 >gi|290511539|ref|ZP_06550908.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55] gi|289776532|gb|EFD84531.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55] Length = 659 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 233/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 24 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 84 ID---PELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 140 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 141 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 200 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + Y +K L + L++ Sbjct: 201 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGM--RKNEALVRFLEA 258 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 259 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 317 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 318 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 377 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 378 RTMKLTIPEVELPNAEL 394 >gi|26991447|ref|NP_746872.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440] gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida KT2440] Length = 443 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 152/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA LGL ++ + Y PTP+Q K IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV +N +Y +N LT + GG+ Q + Sbjct: 61 QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD F + + N ++ LV+DEADRMLD+GF +Q++ + +P R Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++ ++ L +P IEV+ ++TA +++ V +K L L Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPV--DKKRKADLFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q K ++F + V L L +G + IHG+ Q +R + L +FK +Q+ Sbjct: 239 LRKQ-RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357 Query: 359 AIEKLIEK 366 AIE L + Sbjct: 358 AIEVLTRQ 365 >gi|153800715|ref|ZP_01955301.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3] gi|227812335|ref|YP_002812345.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2] gi|229522328|ref|ZP_04411744.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80] gi|298499563|ref|ZP_07009369.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757] gi|124123690|gb|EAY42433.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3] gi|227011477|gb|ACP07688.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2] gi|229340313|gb|EEO05319.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80] gi|297541544|gb|EFH77595.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757] Length = 422 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 149/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGL +++ + + G V PTPIQ + IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 6 ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65 Query: 61 T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +E+ R + R L+L PTRELA QV D+ + Y K L + + GG + Q Sbjct: 66 QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT +++ V+ +++P ++V +STAET++ +K LL Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G + Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQ 362 Query: 357 IDAIEKLIEKKV--DWLNG 373 ++AIE+L+ ++ +WL G Sbjct: 363 LEAIERLLNTRLPQEWLKG 381 >gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 610 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 230/371 (61%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL+ ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNS 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ P+ L+L PTRELA QVA+ F Y K L V + GG Q L R Sbjct: 68 IDPN---TNAPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH RG L + +++ +V+DEAD ML MGFI I+ I P RQ Sbjct: 125 GPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ +L P +++ ++T ETIE FV +Q++K AL++ +L+ Sbjct: 185 LFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQV-SQHNKLEALVR-VLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T + IIF + + V L LE +G++ +HG+++Q++R + + K GT+ +++A Sbjct: 243 EKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGTLDIIIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361 Query: 362 KLIEKKVDWLN 372 + + ++ ++ Sbjct: 362 RATKSRISPMD 372 >gi|115361005|ref|YP_778142.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria AMMD] gi|115286333|gb|ABI91808.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD] Length = 511 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 153/366 (41%), Positives = 224/366 (61%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + D Y PTP+Q+K IP VL DV AQTGTGKTA F LP+L Sbjct: 35 MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 94 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++++G A R L+L PTRELA QV +F YGK +L GG+ Q K Sbjct: 95 QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 154 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + +E LV+DEADRMLD+GF + + + +P R Sbjct: 155 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQR 214 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT TD+++ ++ + L++P I V+ P+ T I+ +V T + +K + Sbjct: 215 QTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQ-WVVTVDKRNKPDLFMH-- 271 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +++ + ++F + V L L++ G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 272 LVAENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 331 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 332 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 391 Query: 359 AIEKLI 364 AIE LI Sbjct: 392 AIEALI 397 >gi|311748030|ref|ZP_07721815.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1] gi|126575012|gb|EAZ79370.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1] Length = 379 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 156/381 (40%), Positives = 236/381 (61%), Gaps = 15/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+DLGL+ +++ A+ A Y KP PIQI+ IP L R D+ GIA TG+GKTAS++LP+L Sbjct: 3 MNFSDLGLNKQLLTAIEKAKYTKPYPIQIEAIPAFLNRKDILGIAPTGSGKTASYILPIL 62 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVA---DNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L+ K R R L+L PTRELAAQVA DNF ++ + T+A+ GG+ Q Sbjct: 63 QLLQGKKEHRSRNIPVLVLVPTRELAAQVAQVADNFSRFLERRIKTLAVF-GGVSINPQM 121 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL G D+L+ TPGR+LD ++ L ++++EILV+DE D++L+MGF + I + +P Sbjct: 122 MKLN-GTDILVATPGRLLDLLSKNALSISDVEILVLDEMDKVLNMGFREEVDQILADIPK 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA---QYSKKCA 233 RQT+LFSAT + L++V + L++PKRI V A ++ + YA KK Sbjct: 181 NRQTILFSATQDETLEEVISSLLKDPKRISVK-----AAEVDMNLINQYAYRISAEKKGP 235 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ ++ S D ++F + + NL L K G A HG+ Q +R + L+ FK Sbjct: 236 LLRHIINSGD-WSQILVFTSSIRTANNLVQKLVKNGIDALAFHGDKSQGARTEALARFKS 294 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++VA+DLA RG+DI + V NF++P ++Y+HR+GRTGRAG G+A +L+ +ED Sbjct: 295 GKTRVLVATDLAGRGIDIQFLPLVINFELPRSPKDYVHRVGRTGRAGATGEAISLITEED 354 Query: 354 IKHIDAIEKLIEKKVDWLNGD 374 + H I+K ++K V + D Sbjct: 355 LHHFKIIQKKMKKHVQLRSTD 375 >gi|262190914|ref|ZP_06049130.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93] gi|297580199|ref|ZP_06942126.1| ATP-dependent RNA helicase [Vibrio cholerae RC385] gi|262033210|gb|EEY51732.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93] gi|297535845|gb|EFH74679.1| ATP-dependent RNA helicase [Vibrio cholerae RC385] Length = 422 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 149/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGL +++ + + G V PTPIQ + IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 6 ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65 Query: 61 T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +E+ R + R L+L PTRELA QV D+ + Y K L + + GG + Q Sbjct: 66 QRFIEQPWQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT +++ V+ +++P ++V +STAET++ +K LL Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G + Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQ 362 Query: 357 IDAIEKLIEKKV--DWLNG 373 ++AIE+L+ ++ +WL G Sbjct: 363 LEAIERLLNTRLPQEWLKG 381 >gi|52424550|ref|YP_087687.1| SrmB protein [Mannheimia succiniciproducens MBEL55E] gi|52306602|gb|AAU37102.1| SrmB protein [Mannheimia succiniciproducens MBEL55E] Length = 613 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 152/406 (37%), Positives = 242/406 (59%), Gaps = 25/406 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FGDLGLPEFILSAVSDMGFETPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLAQ 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVA+ E + KN + +A L GG ++ Q + L + Sbjct: 68 ID---IEEKHPQMLVMAPTRELAIQVAEACELFTKNAKGVHIATLYGGQRYDIQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P QT Sbjct: 125 GAQVVVGTPGRILDHIRRGTLNLSELKFIVLDEADEMLRMGFIDDVETVMAELPAQHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + T I + C+ Y + +K L + L+ Sbjct: 185 LFSATMPEPIRRITKRFMTDPQEVKIQSTQRTNPDIAQSCW---YVRGYRKNEALLRFLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 242 VED-FDGAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G A V + + + I Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLSNI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN--HARKNNPIPQKST 404 E+L++K P+E++D+ H AR+ K T Sbjct: 361 ERLMKK--------------PIEEVDVPNHEALQARRREKFKAKIT 392 >gi|170690407|ref|ZP_02881574.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] gi|170144842|gb|EDT13003.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] Length = 481 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 155/368 (42%), Positives = 219/368 (59%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + D Y PTP+Q K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIDPLLRNMRDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 TIL-EKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L ++G A R L+L PTRELA QV +F YGK +L GG+ Q K Sbjct: 61 QRLGQQGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSVNPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT TD+++ ++ L+ P I V+ P++TA I V K L L Sbjct: 181 QTLLFSATFTDDIRALAAGILRGPVDISVSPPNATASKIRQWVVPV--DKRNKPDLFMHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +Q+ ++ ++F + V L L++ G++V IHG+ Q +RM+ L FK G + + Sbjct: 239 V-AQNNWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARMRALERFKTGEVNM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 358 AIEALIRQ 365 >gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii OhILAs] Length = 529 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 234/371 (63%), Gaps = 11/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL + ++ +L+ GY PTPIQ + IP + D+ G AQTGTGKTA+F +PML Sbjct: 5 IQFQDLNIKKDILKGILELGYEVPTPIQAQAIPRLYAGEDIIGQAQTGTGKTAAFGIPML 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKL 119 EK + + P+ LIL PTREL+ QVAD K+ K + ++ I GG P + Q K L Sbjct: 65 ---EKINPQQKTPQVLILAPTRELSMQVADEIRKFSKYLSGAKSIAIYGGQPIDRQIKAL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G ++++ TPGRILDH R L ++ I LV+DEAD+MLDMGF I+ I P RQ Sbjct: 122 KQGVNIVVGTPGRILDHIRRKTLRLDQIVGLVLDEADQMLDMGFSDDIEAILQETPSERQ 181 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237 T++FSATM E++++++ +++NPK+++V T I + V + + C +L Sbjct: 182 TVMFSATMPKEIEEIAKKYMKNPKKVKVVHKELTVPKISQYYFEVRPHEKLDALCRIL-- 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + GIIFC KK V L +L+ +G+SV IHG++ Q R +++ F++GT+ Sbjct: 240 ---DMENSELGIIFCRTKKGVDELVENLQSRGYSVEGIHGDLKQSQRDRVMKKFRDGTLD 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 LM+A+D+AARG+D+ DV V N+DVP E Y+HRIGRTGRAGR G A+TLV + I+ + Sbjct: 297 LMIATDVAARGIDVDDVDLVVNYDVPEDFEYYVHRIGRTGRAGREGLAYTLVTGKQIRTL 356 Query: 358 DAIEKLIEKKV 368 A+E I+ K+ Sbjct: 357 KALEAYIKGKI 367 >gi|311743209|ref|ZP_07717016.1| DeaD protein [Aeromicrobium marinum DSM 15272] gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272] Length = 567 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 152/374 (40%), Positives = 228/374 (60%), Gaps = 13/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL +V + GY PTPIQ + I +L DV G+AQTGTGKTA+F LP+L Sbjct: 8 FADLGLGDALVAVLAGLGYETPTPIQAQAIGPLLDGRDVVGLAQTGTGKTAAFALPILER 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 L+ RA + LIL PTRELA QV+D F Y + L + + GG + AQ + L+R Sbjct: 68 LDPDRAETQ---ALILAPTRELALQVSDAFATYAARTPGLRILPVYGGQGYAAQLRGLQR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +RG L ++ ++ LV+DEAD ML MGF ++ I + P +Q Sbjct: 125 GAHVVVGTPGRVIDHLDRGSLELSGLDHLVLDEADEMLTMGFAEDVERILADTPEDKQVA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L +P ++V TP++T T + K L +LL+ Sbjct: 185 LFSATMPPAIRRLAKKYLNDP--VDVATPAATRSTTTVRQRWISVPHHGKFDALTRLLE- 241 Query: 242 QDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++NG IIF K+ L L +GF A++G++ Q R +I+ K G++ + Sbjct: 242 ---VENGDGMIIFVRTKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLKGGSLDI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV N D+P+ AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 299 LVATDVAARGLDVDRITHVINHDIPHDAESYVHRIGRTGRAGRSGEAVLFVTPRERRMLS 358 Query: 359 AIEKLIEKKVDWLN 372 AIEK+ + V+ ++ Sbjct: 359 AIEKVSGRPVEEMS 372 >gi|117619321|ref|YP_856922.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560728|gb|ABK37676.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 461 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 163/384 (42%), Positives = 240/384 (62%), Gaps = 8/384 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLSP ++ AV + GY +PTPIQ + IP +L DV G AQTGTGKTA F LPML Sbjct: 1 MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L GR R R R L+L PTRELAAQV ++ KY + + GG+ + Sbjct: 61 QRLLANHGRGR-RQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDA 119 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++ G D+L+ TPGR+LD +G L ++ +E+LV+DEADRMLDMGFI I+ I +P R Sbjct: 120 IKLGIDILVATPGRLLDLLTQGALTLSELEVLVLDEADRMLDMGFIVDIRRIMKALPAER 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT + E++ ++++ L+ P IEV+ ++ AE + + ++ LL + Sbjct: 180 QTLLFSATFSSEIKALADDLLKEPTLIEVDPSNTAAEQVTQRIIQV--DRERRRELLSHM 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F K+ L ++K G AIHG+ Q +R + L++F+EG +++ Sbjct: 238 I-GRGNWQRVLVFVRTKQIADRLAQQMQKDGLDTVAIHGDKSQGARNRALADFREGKVRV 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HV NF++P AE+YIHRIGRTGRAGR G+A +LV+++++ + Sbjct: 297 LVATDIAARGLDIDQLPHVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLK 356 Query: 359 AIEKLIEK--KVDWLNGDLSSLNP 380 IE LI + V+ L G S P Sbjct: 357 GIEALIGQSLSVEILEGYEPSGKP 380 >gi|254520792|ref|ZP_05132848.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA] gi|226914541|gb|EEH99742.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA] Length = 526 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 231/373 (61%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL ++ ++ D G+ KP+ IQ + IP+ +Q +D+ G AQTGTGKTA+F ++ Sbjct: 6 FSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGCGIINH 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + K +IL PTRELA QV D ++ K +LT+ + GG P Q + L+R Sbjct: 66 ISKKSGL----SAIILAPTRELAIQVNDELKRLSKYDDLTILPVYGGDPITNQIRALKRN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++++ TPGR+LDH RG + ++ I+ LV+DEAD ML+MGFI +++I +P RQTLL Sbjct: 122 VNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQTLL 181 Query: 183 FSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM D+++K+++ +++ + K I + S T TI F V+ ++ C +L Sbjct: 182 FSATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLD--- 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 DT + IIFC KK V L ++ +G+ V +HG++ Q R++ L FKEG++ + Sbjct: 239 --FDTPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+P E+Y+HRIGRTGRA R G A++LV+ ++ + Sbjct: 297 VATDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQ 356 Query: 360 IEKLIEKKVDWLN 372 I+ + + + N Sbjct: 357 IKSVTKSDISRKN 369 >gi|153830439|ref|ZP_01983106.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae 623-39] gi|229514213|ref|ZP_04403674.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21] gi|254285788|ref|ZP_04960751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae AM-19226] gi|148874080|gb|EDL72215.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae 623-39] gi|150424285|gb|EDN16223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae AM-19226] gi|229348193|gb|EEO13151.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21] gi|327485774|gb|AEA80180.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3894-4] Length = 422 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 149/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGL +++ + + G V PTPIQ + IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 6 ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65 Query: 61 T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +E+ R + R L+L PTRELA QV D+ + Y K L + + GG + Q Sbjct: 66 QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT +++ V+ +++P ++V +STAET++ +K LL Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G + Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362 Query: 357 IDAIEKLIEKKV--DWLNG 373 ++AIE+L+ ++ +WL G Sbjct: 363 LEAIERLLNTRLPQEWLKG 381 >gi|326798202|ref|YP_004316021.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21] gi|326548966|gb|ADZ77351.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21] Length = 419 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 216/372 (58%), Gaps = 3/372 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ A+ GY PTPIQ + IP+VL D+ G AQTGTGK+A+F+LP+L Sbjct: 1 MSFKELKLIDPLLKAIHKEGYETPTPIQSQAIPVVLSGRDLLGCAQTGTGKSAAFILPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + + L+L PTRELA Q+ ++ YG+ L ++ GG+ Q L+ Sbjct: 61 QQLNSLPNKEKAVKALVLAPTRELAIQINESIATYGQLLPLKHQVVYGGVNINTQISGLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD + L + + V+DEADRMLDMGFI I+ + +L+P RQT Sbjct: 121 KGIDILVATPGRLLDLVGQRVLTLRAVSHFVLDEADRMLDMGFIHDIKKVVALLPIKRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ K++ L+NP R+EV SSTAE + YA L L Sbjct: 181 LFFSATMPPEITKLANTLLKNPVRVEVTPVSSTAEKVTQV---VYAVDKANKPKLLLHLL 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++F K L L KQG AIHGN Q +R L FK G +++++ Sbjct: 238 KSEVRDHVLVFTRTKHGADRLVKFLAKQGVQAAAIHGNKSQNARQNALQAFKSGQLKVLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ V NFD+PN E Y+HRIGRTGRAG GKA + E+ ++ +I Sbjct: 298 ATDIAARGIDVEELKFVINFDLPNEPETYVHRIGRTGRAGASGKALSFCDLEERPYLQSI 357 Query: 361 EKLIEKKVDWLN 372 L + + +N Sbjct: 358 NNLTNQAIPVIN 369 >gi|265994970|ref|ZP_06107527.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262766083|gb|EEZ11872.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 455 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 9 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 69 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 246 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 247 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 364 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 365 AVERVTRSKLSIKDAPVKLAPAPVAK 390 >gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649] gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649] Length = 601 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 217/361 (60%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGL +V+ A+ D GY P+PIQ TIP +L V G+AQTGTGKTA+F LP+L+ Sbjct: 23 FSDLGLDERVLRALKDVGYETPSPIQAATIPALLAGRHVVGLAQTGTGKTAAFALPILSR 82 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + + P+ L+L PTRELA QV + FEKY + V + GG + Q L R Sbjct: 83 LD---LKQKTPQALVLAPTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGVQLSALRR 139 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGRI+DH +G L ++ + LV+DEAD ML MGF ++ I + P + Sbjct: 140 GVHIVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAEKHVA 199 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++S+ +L + I V + TA I ++ + Y +K L ++L+ Sbjct: 200 LFSATMPSQIRRISKKYLTDALEITVERTTETAPNITQRYL--FCSYPQKIDALTRILEV 257 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + I+F K L L +GFS AI+G+I Q R + ++ K G + ++VA Sbjct: 258 EN-FEGMIVFVRTKNETEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDILVA 316 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A + V + + AIE Sbjct: 317 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPREKYLLKAIE 376 Query: 362 K 362 K Sbjct: 377 K 377 >gi|153824344|ref|ZP_01977011.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae MZO-2] gi|254226198|ref|ZP_04919793.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V51] gi|125621300|gb|EAZ49639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V51] gi|149741898|gb|EDM55927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae MZO-2] Length = 422 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 149/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGL +++ + + G V PTPIQ + IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 6 ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65 Query: 61 T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +E+ R + R L+L PTRELA QV D+ + Y K L + + GG + Q Sbjct: 66 QRFIEQPWQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT +++ V+ +++P ++V +STAET++ +K LL Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G + Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362 Query: 357 IDAIEKLIEKKV--DWLNG 373 ++AIE+L+ ++ +WL G Sbjct: 363 LEAIERLLNTRLPQEWLKG 381 >gi|187921780|ref|YP_001890812.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia phytofirmans PsJN] gi|187720218|gb|ACD21441.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans PsJN] Length = 479 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 221/373 (59%), Gaps = 15/373 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + D Y PTP+Q+K IP VL +DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLSGNDVMAAAQTGTGKTAGFALPLL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L RARV L+L PTRELA QV +F YGK +L GG+ Sbjct: 61 QRLVQHGPEVSSNRARV-----LVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSIN 115 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q KL +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + Sbjct: 116 PQMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFERELNAVFAA 175 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQTLLFSAT TD+++ ++ L+ P I V+ P++TA I+ V K Sbjct: 176 LPAQRQTLLFSATFTDDIRTMAAGILRGPVNISVSPPNATASRIKQWVVPV--DKKNKPD 233 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L L+ +++ ++ ++F + V L L+K G+SV IHG+ Q +R++ L FK Sbjct: 234 LFMHLV-AENNWEHALVFVKTRNGVDYLAAILDKAGYSVDTIHGDKPQPARLRALERFKT 292 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G + ++VA+D+AARGLDI ++ V N D+P A++Y+HRIGRTGRAG G A +LV ++ Sbjct: 293 GEVSMLVATDVAARGLDIDNLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADE 352 Query: 354 IKHIDAIEKLIEK 366 + AIE LI + Sbjct: 353 APQLAAIEALIRQ 365 >gi|261218608|ref|ZP_05932889.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] gi|261321895|ref|ZP_05961092.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] gi|260923697|gb|EEX90265.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] gi|261294585|gb|EEX98081.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] Length = 462 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 76 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 254 DAD-MRSVIVFTRTKHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397 >gi|333029481|ref|ZP_08457542.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] gi|332740078|gb|EGJ70560.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] Length = 606 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 148/376 (39%), Positives = 236/376 (62%), Gaps = 10/376 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60 +F +LG+S +++ A+ + GY P P+Q + +P +L + +DV +AQTGTGKTA+F LP Sbjct: 3 NFEELGVSAEILKAITEMGYEHPMPVQEEVVPYLLGENNDVVALAQTGTGKTAAFGLP-- 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 I++K R+P++L+L PTREL Q+AD+ Y K L V + GG ++Q + L Sbjct: 61 -IIQKVDVENRVPQSLVLCPTRELCLQIADDLYNYSKYIKGLKVIPVYGGSSIDSQIRSL 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG +++ TPGR+LD NRG + ++ I+ +V+DEAD ML+MGF I +I VP R Sbjct: 120 KRGVHIIVATPGRLLDLMNRGTVSLSTIKNVVMDEADEMLNMGFTESINSILQDVPKDRN 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM+ E+ ++S+N+LQNPK I + + ++ ++H +A+ K A L+++ Sbjct: 180 TLLFSATMSPEIARISKNYLQNPKEITIGRKNEGSQNVKHVVYKVHAK--DKYAALKRIA 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + GIIFC ++ + L K G++ ++HG + Q R ++ F+ IQL+ Sbjct: 238 DFYPQIY-GIIFCRTRRETQEIADLLIKDGYNADSLHGELSQAQRDAVMQKFRMRNIQLL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLRESGKLRD 356 Query: 360 IEKLIEKKVDWLNGDL 375 IEK+I KK + NG+L Sbjct: 357 IEKIIGKKFE--NGEL 370 >gi|134292532|ref|YP_001116268.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia vietnamiensis G4] gi|134135689|gb|ABO56803.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis G4] Length = 483 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 222/370 (60%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + D Y PTP+Q IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIDPLLRTLQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F +YGK +L GG+ Q K Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + +E LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT TD+++ ++ L+NP I V+ P++TA I+ V K L L Sbjct: 181 QTLLFSATFTDDIRAMAATILRNPVNISVSPPNTTASRIKQWVVPV--DKRNKPELFMHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +++ ++ ++F + V L L++ G++V IHG+ Q +R++ L FK +Q+ Sbjct: 239 V-AENKWEHALVFVKTRAGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKARDVQM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPMVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEKKV 368 AIE LI K + Sbjct: 358 AIEALIGKTL 367 >gi|260770147|ref|ZP_05879080.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972] gi|260615485|gb|EEX40671.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972] Length = 422 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/378 (40%), Positives = 226/378 (59%), Gaps = 11/378 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG++P +V + G PT IQ + IP VL+ DV AQTGTGKTA+F LP++ Sbjct: 8 FLPLGIAPALVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQR 67 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + R P R L+L PTRELA QV DN + Y + L + GG Q + Sbjct: 68 FVDHPLQ-REPNSKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQ 126 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GAD+LI TPGR+LDH + L + N E LV+DEADRMLDMGF+P IQ + + Sbjct: 127 NLRGGADILIATPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHE 186 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL FSAT +++ + +QNP ++V +STA+T+E +K LL Sbjct: 187 RQTLFFSATFDSKIKAFAHRMMQNPVEVQVAPSNSTADTVEQMVYPV--DKKRKRELLAY 244 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ S++ + ++F K+ L L+ G +I+G+ Q +R K L +FK G ++ Sbjct: 245 LIGSRN-WQQVLVFTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVR 303 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++A+D+AARG+DI + V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++ ++ + Sbjct: 304 ALIATDVAARGIDIAQLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLL 363 Query: 358 DAIEKLIEKKV--DWLNG 373 +AIE+L++K++ +WL G Sbjct: 364 EAIERLLDKRLPQEWLKG 381 >gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 432 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 152/369 (41%), Positives = 223/369 (60%), Gaps = 11/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY K TPIQ + IP V + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + GR+ R LIL PTRELAAQ+ADN Y K ++ V ++GG+ ++Q Sbjct: 61 QKMLDNPSTTGRSNAR---ALILTPTRELAAQIADNINDYAKYLDMKVVTVLGGVKMDSQ 117 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL+RGAD++I TPGR+L+H L ++N++ LV+DEADRMLDMGF IQ I V Sbjct: 118 ATKLKRGADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVN 177 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT + +++++ + P I + ++TA T+ V + +K LL Sbjct: 178 KKRQNLLFSATFSTAVKQLANVMMVKPNIIAADKQNTTAVTVSQ--VVYPVEQRRKRELL 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L+ + K ++F + L L G +HG Q SR + L FKEG Sbjct: 236 SELI-GKKNWKQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGK 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+++AARGLDI + +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 295 MRVLVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354 Query: 356 HIDAIEKLI 364 + IEKLI Sbjct: 355 TLADIEKLI 363 >gi|306838409|ref|ZP_07471254.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF 2653] gi|306406549|gb|EFM62783.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF 2653] Length = 455 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 9 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 69 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 246 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 247 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 364 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 365 AVERVTRSKLSIKDAPVKLAPAPVAK 390 >gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain protein [Nitratifractor salsuginis DSM 16511] gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis DSM 16511] Length = 462 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 141/362 (38%), Positives = 224/362 (61%), Gaps = 6/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P+V V AG+ +P+PIQ + IP++L+ D+ G A TGTGKTA+F LP+L Sbjct: 1 MTFKDFDLHPEVAKGVRIAGFKEPSPIQKEAIPIILEGRDLVGQAHTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + +G + R L++ PTRELA QV+D G+ + + GG+ + Q + Sbjct: 61 DRIARGE----IERALVITPTRELATQVSDELYHLGRFAGIRTLAVYGGVGYGRQIALIH 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+ D + +GK+ + N E++V+DEAD MLDMGF+ ++ I +P RQT Sbjct: 117 RGVQIVVATPGRLKDLYQKGKIDVFNPEVVVLDEADEMLDMGFLDDVREIFEYIPQNRQT 176 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D ++++++ L P+ I V +T + + + A+++ LL+ Sbjct: 177 LLFSATMPDPIKELADTLLYEPEFISVVGEETTKNVDIEQYYYVINENQRDEAIVR-LLE 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ K +IFC K+ V L L+ GF+ +HG+IDQ R I+ +F+ G ++++ Sbjct: 236 TENYDK-ALIFCRMKREVDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILI 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI +V HVFN+ +P ++Y+HRIGRTGRAG+ G+A TL + E+ + + I Sbjct: 295 ATDVAARGLDIKNVTHVFNYHIPFDPQSYVHRIGRTGRAGKRGRAITLASTEEFRELQRI 354 Query: 361 EK 362 K Sbjct: 355 RK 356 >gi|332289496|ref|YP_004420348.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179] gi|330432392|gb|AEC17451.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179] Length = 590 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 231/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGL ++ A+ D G++ P+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 1 MTFADLGLPENLLSAISDLGFINPSPIQQACIPHLLNGEDVLGMAQTGSGKTAAFALPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ + + P+ L++ PTRELA QVAD E++ KN + + + GG ++ Q + L Sbjct: 61 SKIDLDK---KYPQLLVMAPTRELAIQVADACEQFAKNLKGINIVTVYGGQRYDIQLRAL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++GA V++ TPGRILDH R L ++ ++ +V+DEAD ML MGFI ++ + + +P + Q Sbjct: 118 KQGAQVVVGTPGRILDHIRRKTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPESHQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F++ P+ I++ + TA I + + KK L + L Sbjct: 178 TALFSATMPEPIRRITRRFMREPQEIKIQSTQQTAPDITQSY--WFVNGFKKSEALVRFL 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ I+F K + LE+ GF A++G++ Q+ R + L + G + ++ Sbjct: 236 EVEE-FDAAIVFTRTKTGTTEVTDLLERNGFRCAALNGDMTQQLREQTLDKLRNGRLDIV 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N+D+P E+Y+HRIGRTGRAGR G+A V + + + Sbjct: 295 VATDVAARGIDIDRISLVVNYDIPLDPESYVHRIGRTGRAGRAGRALLFVEAREKRLLRN 354 Query: 360 IEKLIEKKVD 369 IE+L++K VD Sbjct: 355 IERLMKKTVD 364 >gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium sp. AL-21] gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21] Length = 529 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 232/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL +S ++ AV D G+ + TPIQ IP VL+ DV G AQTGTGKTA+F +P+L Sbjct: 6 FKDLNISSEIQRAVEDMGFEEATPIQSLAIPHVLEGKDVTGQAQTGTGKTAAFGIPILET 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120 ++ R + +IL PTRELA QVA+ +K K Y + +L GG P E Q K L+ Sbjct: 66 VDPSN---RDLQAVILCPTRELAIQVAEEMKKLSK-YMRKIGILPVYGGQPIERQIKALK 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G ++I TPGR++DH RG + M ++++L++DEAD MLDMGF I+ + +P RQ Sbjct: 122 KGVQIIIGTPGRVMDHMRRGTIDMGSVKMLILDEADEMLDMGFREDIEFVLDYIPDERQI 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ ++ ++ + ++P+ ++V T I+ + + K +L +LL Sbjct: 182 LLFSATMSPDILYITRRYQESPEFLKVVPKELTVPEIKQIYFEVKEKM--KLDVLSRLLD 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D K ++FCN K+ V L + L+ +G++ +HG++ QR R ++S F+ G I+++V Sbjct: 240 IND-FKLSLVFCNTKRRVDKLVNHLQIRGYAADGLHGDMSQRQRDNVMSKFRSGNIEILV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V VFNFDVPN E Y+HRIGRTGRAG+ G A+T V+ +++ + I Sbjct: 299 ATDVAARGIDVDNVEAVFNFDVPNDDEYYVHRIGRTGRAGKTGIAYTFVSGKEVYQLRDI 358 Query: 361 EKLIEKKVD 369 + + K++ Sbjct: 359 MRYTKTKIE 367 >gi|306843924|ref|ZP_07476519.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1] gi|306275679|gb|EFM57403.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1] Length = 455 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 9 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 69 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 246 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 247 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 364 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 365 AVERVTRSKLSIKDAPVKLAPAPVAK 390 >gi|251793160|ref|YP_003007888.1| cold-shock deAd box protein a [Aggregatibacter aphrophilus NJ8700] gi|247534555|gb|ACS97801.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Aggregatibacter aphrophilus NJ8700] Length = 600 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 149/373 (39%), Positives = 234/373 (62%), Gaps = 13/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADLGL ++ AV D G+ P+PIQ IP +L+ DV G+AQTG+GKTA+F LP+L Sbjct: 6 MTFADLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPIL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 ++ + P+ L++ PTRELA QVAD +F KY K N V L GG ++ Q + Sbjct: 66 AKIDPAE---KHPQLLVMAPTRELAIQVADACEHFVKYAKGIN--VVTLYGGQRYDIQLR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++GA V++ TPGRILDH RG L + ++ +V+DEAD ML MGFI ++ + + +P Sbjct: 121 ALKQGAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEH 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QT LFSATM + ++++++ F+++P+ +++ +A I + C+ Y +K L Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCW---YVHGLRKNDALL 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L+ +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ Sbjct: 238 RFLEVED-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + Sbjct: 297 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRL 356 Query: 357 IDAIEKLIEKKVD 369 + +E LI+K ++ Sbjct: 357 LRNVEHLIKKNIE 369 >gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 513 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 234/364 (64%), Gaps = 7/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F++L LS ++ A+L+ G+ + +PIQ + IP++L+ D+ G AQTGTGKTA+F +P + Sbjct: 4 LKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAI 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 +LE + + LIL PTREL QV++ F K K N V + GG E Q K L Sbjct: 64 ELLE---VESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH RG + +N+I+I+V+DEAD MLDMGF ++ I P RQ Sbjct: 121 RKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T++FSATMT+++ + + F ++P+ I+V +A IE + Q + K L +L+ Sbjct: 181 TIMFSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI--QENAKGEALARLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +K ++FCN K V + L+ +G+ A+HG+++Q+ R K+++ F+ G I+++ Sbjct: 239 EYRN-VKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A RG+D+ +V VFN+D+P E+Y+HRIGRTGRAG+ G AF+ + + I ++ Sbjct: 298 VATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKK 357 Query: 360 IEKL 363 IE++ Sbjct: 358 IERI 361 >gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria MC40-6] gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MC40-6] Length = 512 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 152/390 (38%), Positives = 233/390 (59%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 38 FASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97 Query: 61 ------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 T+ ++ R RVR P+ L+L PTRELA QV YGK+ Sbjct: 98 FAQLQKTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157 Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 218 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIA 277 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ D + IIF K + L L GF A Sbjct: 278 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 331 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 332 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 391 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 392 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 421 >gi|229528359|ref|ZP_04417750.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)] gi|229334721|gb|EEO00207.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)] Length = 422 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 148/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGL +++ + + G V PTPIQ + +P VLQ DV AQTGTGKTA+F LP++ Sbjct: 6 ITFSQLGLDSRLLNTLSELGIVNPTPIQQQAVPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65 Query: 61 T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +E+ R + R L+L PTRELA QV D+ + Y K L + + GG + Q Sbjct: 66 QRFIEQPWQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT +++ V+ +++P ++V +STAET++ +K LL Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQIVYPV--DKKRKRELLS 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G + Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362 Query: 357 IDAIEKLIEKKV--DWLNG 373 ++AIE+L+ ++ +WL G Sbjct: 363 LEAIERLLNTRLPQEWLKG 381 >gi|119491286|ref|ZP_01623340.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106] gi|119453450|gb|EAW34612.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106] Length = 509 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 150/360 (41%), Positives = 219/360 (60%), Gaps = 5/360 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+S + G+ +PTP+QI++IP +L D+ G AQTGTGKTA+F LP I Sbjct: 42 FVELGISEARAQHLESIGFTEPTPVQIQSIPQILSGRDIVGQAQTGTGKTAAFSLP---I 98 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+ + + + LIL PTRELA QV D K +L V + GG E Q ++LERG Sbjct: 99 LEQIDHQAKDVQALILTPTRELAMQVKDAIRKMSNERSLYVLTVYGGQSIERQVQRLERG 158 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LD +RGKL ++ I+ LV+DEAD ML MGFI ++ I RQT Sbjct: 159 VHIVVGTPGRVLDLLSRGKLKLHGIKWLVLDEADEMLSMGFIQDVEKILEASSKDRQTAF 218 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ + K+ FL +P ++V P +T + I V T + K LQ +L+ + Sbjct: 219 FSATIEPSIWKLVRKFLNSPVTVKVEQPKTTPKQISQE-VYTVPRGWTKARALQPILELE 277 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++ I+F K+ L L+ G SV HGN++Q R ++L F++ ++ +VA+ Sbjct: 278 DP-ESAIVFVRTKQAAAELTSCLQGAGHSVDEYHGNLNQSQRERLLVRFRKRQVRWIVAT 336 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ + HV N+D+P+ AE+Y+HRIGRTGRAGR GKA TL+ D + + IE+ Sbjct: 337 DIAARGLDVDHLTHVINYDLPDNAESYVHRIGRTGRAGREGKAITLLQPMDRRKLRMIER 396 >gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis MED217] gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis MED217] Length = 442 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 229/372 (61%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL ++ A+ D GY PTPIQ + IP++L+ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFKELGLIDPILKALADKGYTHPTPIQRQAIPILLKGKDLLGSAQTGTGKTAAFTIPIL 60 Query: 61 T-ILEK---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 I +K G+ + ++ + LI+ PTRELA Q+ DN ++Y K + ++ GG+ +Q Sbjct: 61 QQIYDKVGSGKGKRKL-KALIVTPTRELAIQIEDNVKEYSKYTGIQSTVIFGGVKQASQV 119 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + + +G DVL TPGR+LD +G + + IE LV+DEAD+MLDMGFI I+ I LVP Sbjct: 120 QAMRKGVDVLTATPGRLLDLVKQGFIDLGTIEYLVLDEADQMLDMGFIHDIKKILKLVPH 179 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ+L FSATM E+ +S+ L + +++ + TAE ++ + K LL+ Sbjct: 180 KRQSLFFSATMPKEIIDLSKLILGDFEKVSIAPEKPTAERVDQAVY--FVSKKNKAKLLK 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ + ++F K + L+K G AIHGN Q +R K L+ FKEG + Sbjct: 238 HLIDTEKP-ETLLVFSRTKHGANKIVKVLDKAGIQAAAIHGNKSQAARQKALNAFKEGKL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+D+ ++ V +D+PN E Y+HRIGRTGRA G A + A ++ + Sbjct: 297 HVLVATDIAARGIDVSELELVIQYDLPNVPETYVHRIGRTGRAKASGIAISFCATDERAY 356 Query: 357 IDAIEKLIEKKV 368 + IEKLI++K+ Sbjct: 357 LKDIEKLIKQKI 368 >gi|295097653|emb|CBK86743.1| ATP-dependent RNA helicase CsdA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 631 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 228/364 (62%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 IDPD---LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 362 KLIE 365 + ++ Sbjct: 362 RTMK 365 >gi|119502760|ref|ZP_01624845.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080] gi|119461106|gb|EAW42196.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080] Length = 582 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 217/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL + + GY TPIQ TIPL+L+ DV G+AQTGTGKTA+F LP+L Sbjct: 11 FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILAN 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ +VR P+ L+L PTRELA QVA+ F YG+ L + + GG Q K L Sbjct: 71 ID---VKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLRE 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH R + + I +V+DEAD ML MGFI + I + P R+ Sbjct: 128 GTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++ ++ L NP I V ++T E IE C+ A+ + K L++LL Sbjct: 188 LFSATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCY--WLAKGASKLEALKRLLAF 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +DT + I+F +++ + L + G ++G++DQ+ R++ +S+ K G + ++VA Sbjct: 246 EDT-EGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVA 304 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+DVP E Y+HRIGRTGRAGR GKA V + + + IE Sbjct: 305 TDVAARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIE 364 Query: 362 KLIEKKV 368 +L + + Sbjct: 365 RLTRQSI 371 >gi|326538779|gb|ADZ86994.1| DEAD/DEAH box helicase domain protein [Brucella melitensis M5-90] Length = 455 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 9 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 69 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 129 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 189 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRR--LLSAMLT 246 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 247 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 306 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 364 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 365 AVERVTRSKLSIKDAPVKLAPAPVAK 390 >gi|261325143|ref|ZP_05964340.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|261752356|ref|ZP_05996065.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] gi|261301123|gb|EEY04620.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|261742109|gb|EEY30035.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] Length = 462 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 76 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397 >gi|260545280|ref|ZP_05821021.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038] gi|260754789|ref|ZP_05867137.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758012|ref|ZP_05870360.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260761835|ref|ZP_05874178.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883806|ref|ZP_05895420.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261214040|ref|ZP_05928321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260096687|gb|EEW80562.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038] gi|260668330|gb|EEX55270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672267|gb|EEX59088.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674897|gb|EEX61718.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260873334|gb|EEX80403.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260915647|gb|EEX82508.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 458 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 76 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397 >gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria AMMD] gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD] Length = 512 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 152/390 (38%), Positives = 233/390 (59%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 38 FASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97 Query: 61 ------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 T+ ++ R RVR P+ L+L PTRELA QV YGK+ Sbjct: 98 FAQLQKTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157 Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 218 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIA 277 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ D + IIF K + L L GF A Sbjct: 278 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 331 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 332 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 391 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 392 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 421 >gi|257464721|ref|ZP_05629092.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor 202] gi|257450381|gb|EEV24424.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor 202] Length = 604 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 232/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL ++ AV + G+V P+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFADLGLPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPIL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L++ PTRELA QVAD E++ KN + + GG ++ Q + L Sbjct: 66 AQIDPEQ---RYPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 123 KNGAQVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPENHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + ++++++ F+++P+ +++ +A I + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNG-FRKNDALLR-FL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D IIF K +++ E+ G+ A++G++ Q+SR + L K G + ++ Sbjct: 241 EVED-FDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDII 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359 Query: 360 IEKLIEKKVD 369 IE LI+K +D Sbjct: 360 IEHLIKKPID 369 >gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 861 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 151/394 (38%), Positives = 233/394 (59%), Gaps = 16/394 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+V PT IQ + IP++L DV G+AQTGTGKTA+F LP+L Sbjct: 163 FTDLGLPRDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDA 222 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ +R + + L+L PTRELA Q A+ + ++ L V + GG P+ Q L+ Sbjct: 223 VD---SRDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGALKG 279 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D ++G L ++++ V+DEAD ML MGF ++ I +P R+T Sbjct: 280 GAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAQSLPTDRRTA 339 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +Q V+ L P ++EV+ P+ST T+ + + K + ++L Sbjct: 340 LFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVV--PFRHKIGAVSRVLAV 397 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + I+F K ++ L +G AI G++ QR R +++ + GT+ ++VA Sbjct: 398 TDA-EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVA 456 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V NFDVP AE Y+HRIGRTGRAGRHG+A T + ++ + IE Sbjct: 457 TDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIE 516 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 +L +++ + +L P D+++H ARK Sbjct: 517 RLTGSRLEEI-----TLPSP---ADVSEHR-ARK 541 >gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580] gi|52784366|ref|YP_090195.1| YdbR [Bacillus licheniformis ATCC 14580] gi|81691189|sp|Q65N62|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580] gi|52346868|gb|AAU39502.1| YdbR [Bacillus licheniformis ATCC 14580] Length = 487 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 225/371 (60%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS + A+ G+ + TPIQ +TIPL L DV G AQTGTGKTA+F +P++ Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + ++ +++ PTRELA QV++ K G++ V + GG Q + L++ Sbjct: 65 INPESPNIQ---AIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKN 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH NR + + + +V+DEAD ML+MGFI I++I S VP QTLL Sbjct: 122 PHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +++++E F+ NP+ ++V T I+ ++ + + KK L +LL Q Sbjct: 182 FSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHER--KKFDTLTRLLDIQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F K+ V L +L +G++ IHG++ Q RM L FK+G I+++VA+ Sbjct: 240 -SPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV+NFDVP E+Y+HRIGRTGRAG+ G A T + + + AIE+ Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQ 358 Query: 363 LIEKKVDWLNG 373 ++K+D + Sbjct: 359 TTKRKMDRMKA 369 >gi|240949643|ref|ZP_04753978.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor NM305] gi|240295901|gb|EER46577.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor NM305] Length = 604 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 232/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL ++ AV + G+V P+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFADLGLPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPIL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L++ PTRELA QVAD E++ KN + + GG ++ Q + L Sbjct: 66 AQIDPEQ---RHPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 123 KNGAQVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPEDHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + ++++++ F+++P+ +++ +A I + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQASQRSAPDIAQSYWLVNG-FRKNDALLR-FL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D IIF K +++ E+ G+ A++G++ Q+SR + L K G + ++ Sbjct: 241 EVED-FDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDII 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359 Query: 360 IEKLIEKKVD 369 IE LI+K +D Sbjct: 360 IEHLIKKPID 369 >gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782] gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782] Length = 539 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|296104876|ref|YP_003615022.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059335|gb|ADF64073.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 631 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 228/364 (62%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ +R P+ L+L PTRELA QVA+ ++ K+ + V L GG ++ Q + L + Sbjct: 68 IDPD---LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + Y +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 362 KLIE 365 + ++ Sbjct: 362 RTMK 365 >gi|265991134|ref|ZP_06103691.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265999460|ref|ZP_05466486.2| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9] gi|263001918|gb|EEZ14493.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094098|gb|EEZ18020.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9] gi|326409073|gb|ADZ66138.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis M28] Length = 462 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 76 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRR--LLSAMLT 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397 >gi|265984119|ref|ZP_06096854.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] gi|264662711|gb|EEZ32972.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] Length = 462 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 76 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 313 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397 >gi|261212516|ref|ZP_05926801.1| ATP-dependent RNA helicase [Vibrio sp. RC341] gi|260838447|gb|EEX65103.1| ATP-dependent RNA helicase [Vibrio sp. RC341] Length = 422 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 157/420 (37%), Positives = 245/420 (58%), Gaps = 23/420 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+ LGL +++ + D G V PT IQ + IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 8 FSQLGLDSRLLNTLSDLGIVNPTLIQQQAIPHVLQGRDVLAGAQTGTGKTAAFGLPLIQR 67 Query: 62 ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ R + R L+L PTRELA QV D+ + Y K +L + + GG + Q Sbjct: 68 FIDQPWQREENSKEIRALVLVPTRELAQQVLDSLQAYAKGTDLKIVAVYGGTSMKVQLNH 127 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + R Sbjct: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT +++ V+ +++P ++V +STAET++ +K LL L Sbjct: 188 QTLFFSATFDSKIKAVAYRIMRDPTEVQVTPSNSTAETVQQMVYPV--DKKRKRELLAYL 245 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G ++ Sbjct: 246 IGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ ++ Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDETPQLE 364 Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 AIE+L+ ++ +WL G P E R+ N P++S+G K+ +Q Sbjct: 365 AIERLLNTRLPQEWLKG----FEPSPE---------VREENS-PRRSSGRSAEKRKMKAQ 410 >gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] Length = 444 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 221/370 (59%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F +P+L Sbjct: 1 MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L E + R LIL PTRELA QV + +Y ++ LT + GG+ Q K Sbjct: 61 QLLTTEGPKVAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR++D F + L +N ++ LV+DEADRMLD+GF + NI ++P R Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A T++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAGQMLNDPLTIEVSPRNVAANTVKQWVVPV--DKKRKPELFVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + K ++F + V L L+ G + IHG+ Q +R + L FK +Q+ Sbjct: 239 MR-KGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V NFD+P AE+YIHRIGRTGRAG G+A +LV +++ + Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLS 357 Query: 359 AIEKLIEKKV 368 AIE L + + Sbjct: 358 AIEMLTRQTL 367 >gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 539 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM 43183] Length = 565 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 162/410 (39%), Positives = 239/410 (58%), Gaps = 30/410 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ ++ A+ G V PIQ +P+ L+ +D+ G A+TGTGKT +F +P+L Sbjct: 28 FRELGVCSEIADALESEGIVDAFPIQEMALPIGLRGYDIIGQARTGTGKTLAFGIPLLQR 87 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E G + PR L+L PTRELA+QV D+ G V + GG +E Q + L G Sbjct: 88 IEHGG---KAPRGLVLAPTRELASQVTDDLLVAGGKLGTRVVAVYGGRAYEPQIQALRDG 144 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR+LD +G L ++ I++LV+DEADRMLD+GF+P I+ I LVP RQT+L Sbjct: 145 VDVVVGTPGRLLDLARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERIIELVPAERQTML 204 Query: 183 FSATMTDELQKVSENFLQNPK--RIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLL 239 FSATM E+ +S +L P R EV+T S +T + +H F K +L +LL Sbjct: 205 FSATMPGEIVALSRRYLNRPTNVRAEVHTESEATPQVTQHVF---QTHPMDKPEVLARLL 261 Query: 240 QSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q+ NG ++FC K+ + L ++GF+ A+HG++ Q R + L F+ G Sbjct: 262 QA-----NGRGLTMVFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRERALRAFRSGK 316 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLD+ DV HV N++ P+ AE ++HRIGRTGRAGR G A TLV D+ Sbjct: 317 VDVLVATDVAARGLDVEDVTHVINYECPDSAETHVHRIGRTGRAGREGTAVTLVDWSDLP 376 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 KLI + G+ P E + H + + IP+++TG Sbjct: 377 RW----KLINNALQLPFGE------PPETYSTSDHLYEALD--IPREATG 414 >gi|209519764|ref|ZP_03268550.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] gi|209499774|gb|EDZ99843.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] Length = 466 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ V D Y PTP+Q+K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIDPLLRNVQDRNYQIPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F YGK +L GG+ Q K Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLQFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT TD+++ ++ N L+ P I V+ P++TA I+ V K L L Sbjct: 181 QTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASKIKQWVVPV--DKKNKPDLFMHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++++ ++ ++F + V L L++ G++V IHG+ Q +R++ L FK + + Sbjct: 239 V-AENSWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTREVHM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 358 AIEALIRQ 365 >gi|209559644|ref|YP_002286116.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131] gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131] Length = 539 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|15675334|ref|NP_269508.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS] gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232] gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180] gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005] gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429] gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750] gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS] gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232] gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180] gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005] gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429] gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750] Length = 539 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|21910615|ref|NP_664883.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315] gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1] gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315] gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1] Length = 539 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|152979711|ref|YP_001345340.1| DEAD/DEAH box helicase domain-containing protein [Actinobacillus succinogenes 130Z] gi|150841434|gb|ABR75405.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes 130Z] Length = 615 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 232/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV + G+ P+PIQ IP +L+ DV G+AQTG+GKTA+F LP+L Sbjct: 8 FGDLGLPDFILSAVSEMGFESPSPIQHACIPHLLEGRDVLGMAQTGSGKTAAFSLPLLAQ 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E++ KN + + L GG ++ Q + L + Sbjct: 68 IDSDE---KYPQMLVMAPTRELAIQVADACEQFTKNAKGIRIVTLYGGQRYDIQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P QT Sbjct: 125 GAQVVVGTPGRILDHIKRGTLDLSALKFIVLDEADEMLRMGFIDDVETVMAELPEQHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ NP+ + + + T I + C+ Y + +K L + L+ Sbjct: 185 LFSATMPEPIRRITKRFMTNPQEVRIQSTQRTNPDIAQSCW---YVRGYRKNEALLRFLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ L+K GF A++G++ Q++R + L + G++ ++V Sbjct: 242 VED-FDAAIIFTRTKTGTLDVTELLDKHGFRAAALNGDMTQQAREQTLDRLRNGSLDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G A V + + + I Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLGNI 360 Query: 361 EKLIEKKVD 369 E+L++K ++ Sbjct: 361 ERLMKKPIE 369 >gi|322514213|ref|ZP_08067275.1| superfamily II helicase [Actinobacillus ureae ATCC 25976] gi|322119906|gb|EFX91915.1| superfamily II helicase [Actinobacillus ureae ATCC 25976] Length = 607 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 144/370 (38%), Positives = 233/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL ++ AV + G+V P+PIQ +TIP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFADLGLPQSILDAVNEIGFVNPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + P+ L++ PTRELA QVAD E++ KN + V + GG ++ Q + L Sbjct: 66 AQIDPTQHH---PQMLVMAPTRELAIQVADACEQFTKNMKGVRVVTVYGGQRYDIQLRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G+ V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+++P+ +++ +A I + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITRRFMKDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + IIF K +++ E+ G+ A++G++ Q++R + L+ K G + ++ Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRAAALNGDMTQQAREQTLAKLKSGRLDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V NFD+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359 Query: 360 IEKLIEKKVD 369 IE L++K +D Sbjct: 360 IEHLMKKPID 369 >gi|325265712|ref|ZP_08132401.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394] gi|324982843|gb|EGC18466.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394] Length = 449 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/368 (39%), Positives = 222/368 (60%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FADL L ++ A+ AGY PTPIQ ++IP L D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSALQAAGYDSPTPIQAQSIPAALADKDIMASAQTGSGKTAAFLLPSLQK 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLE 120 I+++ + PR L+L PTRELAAQV N + Y KN ++ L+GG F Q K + Sbjct: 65 IVKRSEKPGKGPRVLVLTPTRELAAQVEKNAQIYAKNMKWVRSVTLVGGSSFGQQIKAMS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+++ TPGR++DH G++ + +E+L++DEADRMLDMGFI I+ I + P RQT Sbjct: 125 KPIDIIVATPGRLMDHMRSGRVDFDRLEVLILDEADRMLDMGFIDDIETIVAATPEDRQT 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + K++ +NP+ IE+ + E + K LL +L+ Sbjct: 185 LLFSATWDGAVGKLARKLTKNPEVIEIEREDKQGKIDEQLLYCDDKNH--KNRLLDHILR 242 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + +IF + K L L ++GF+ +HG++ Q R + L + ++G +++V Sbjct: 243 DAN-IDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A + + + I Sbjct: 302 ATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGLAISFAEVNEYMAVHKI 361 Query: 361 EKLIEKKV 368 E+ I +K+ Sbjct: 362 ERYIGRKL 369 >gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044] gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044] Length = 439 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 222/371 (59%), Gaps = 4/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L ++ A+ AGY PT IQ K IP ++ D+ AQTG+GKTA+F+LP L Sbjct: 1 MTFDALNLHSDLLKALNAAGYKSPTEIQCKAIPKAVKGFDLRASAQTGSGKTAAFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKK 118 + R PR LIL PTRELA Q+A +KY K N ++ I GG+P+ Q +K Sbjct: 61 HHCVANPRKPTVGPRVLILSPTRELAMQIATQADKYSKFLNRVKSVCISGGVPYHVQQRK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L R ++LI TPGR++D+ N+ + ++ IEILV+DEADRMLDMGFI ++ I + P +R Sbjct: 121 LRRPYEILIATPGRLIDYINQKAINLSAIEILVLDEADRMLDMGFIEPVEKIAAATPSSR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM + +S L P I +++ + E I K LL+ + Sbjct: 181 QTLLFSATMQGSVLNLSNRLLNEPMDIVIHSEKTKHENITQKLHYVDG-LQHKNQLLEHI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + D +K+ I+F + K++ L L +G A+HG++ QR R + ++ + G I++ Sbjct: 240 L-NDDVVKHAIVFTSTKRHASQLVFELHDKGLLAGALHGDMSQRQRSRTIAQLRTGKIKV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ ++ HV NFD+P E+Y+HRIGRTGRAG G A + + +D + Sbjct: 299 LVATDVAARGIDVQNITHVINFDLPRNVEDYVHRIGRTGRAGAAGTALSFASGKDTSLVK 358 Query: 359 AIEKLIEKKVD 369 IE+ + +D Sbjct: 359 KIEEYTGQPID 369 >gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 432 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 152/369 (41%), Positives = 222/369 (60%), Gaps = 11/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY K TPIQ + IP V + DV AQTGTGKTA+F LP+L Sbjct: 1 MRFESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + GR+ R LIL PTRELAAQ+ADN Y K +L V + GG+ ++Q Sbjct: 61 QKMLDNPSTTGRSNAR---ALILTPTRELAAQIADNINDYAKYLDLKVVTVYGGVKMDSQ 117 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL+RGAD++I TPGR+L+H L ++N++ LV+DEADRMLDMGF IQ I V Sbjct: 118 ATKLKRGADIIIATPGRLLEHIIACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVN 177 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT + +++++ + P I + ++TA T+ V + +K LL Sbjct: 178 KKRQNLLFSATFSTAVKQLANEMMVKPNVIAADKQNTTAITVSQ--VVYPVEQRRKRELL 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L+ + + ++F + L L G +HG Q SR + L FKEG Sbjct: 236 SELI-GKKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGK 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+++AARGLDI + +V N+D+P AE+Y+HRIGRTGRAG+ G A + V++E+ + Sbjct: 295 MRVLVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354 Query: 356 HIDAIEKLI 364 + IEKLI Sbjct: 355 TLADIEKLI 363 >gi|89092815|ref|ZP_01165767.1| ATP-dependent RNA helicase, DEAD box family protein [Oceanospirillum sp. MED92] gi|89082840|gb|EAR62060.1| ATP-dependent RNA helicase, DEAD box family protein [Oceanospirillum sp. MED92] Length = 415 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 229/375 (61%), Gaps = 15/375 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA L L P + A+ + GY + TPIQ + I + D+ AQTGTGKTA+F LP+L Sbjct: 1 MNFAALDLHPAIQSALDECGYSEMTPIQRQAIVPARRGRDILANAQTGTGKTAAFSLPVL 60 Query: 61 TIL-------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L E G+ R LIL PTRELA Q+ D +Y ++ L + + GG+ + Sbjct: 61 QQLADKPKELESGQVR-----ALILTPTRELAQQLFDTIGRYNQHLGLRMVAVYGGVNLD 115 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q KKL RGAD+LI TPGR+L+H N + + E +V+DEADRMLDMGF+ + +I + Sbjct: 116 TQMKKLRRGADLLIATPGRMLEHINACNVNLGTTEFVVLDEADRMLDMGFVTDVMSILDV 175 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 P +RQTLLFSAT++D + K+S L P++I+ ++ A+TIEH Q +K Sbjct: 176 TPKSRQTLLFSATLSDSVHKLSNKILTRPEKIKAARHNTIADTIEHVVYPVEEQ--RKAD 233 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L +L++ ++ + ++F + K L L+ G HG+ Q +R + +++FK Sbjct: 234 LFAELIKEENWFQV-LVFTSTKAQANELMMDLKYDGIEAVLCHGDKSQGARRRAVADFKA 292 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G IQ++VA+++AARGLDI + V N+++P AE+Y+HR+GR GRAG GKA + V++E+ Sbjct: 293 GKIQVLVATEVAARGLDIQGLEQVVNYNLPYLAEDYVHRVGRAGRAGMAGKAISFVSREE 352 Query: 354 IKHIDAIEKLIEKKV 368 + + +IEKLI ++ Sbjct: 353 EQALASIEKLIGSQI 367 >gi|310822103|ref|YP_003954461.1| RNA helicase dead [Stigmatella aurantiaca DW4/3-1] gi|309395175|gb|ADO72634.1| RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1] Length = 621 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 150/368 (40%), Positives = 211/368 (57%), Gaps = 2/368 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL P +V A+ GY +PTPIQ +P +L+ D+ GIA TGTGKTA+F LP+L Sbjct: 51 FESLGLLPPLVEALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLLQR 110 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + G L+L PTRELA QVA+ +YG+ ++V L GG Q + L+RG Sbjct: 111 ITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLKRG 170 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH R L + + ++V+DEAD MLDMGF ++ I S P RQT L Sbjct: 171 VDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTAL 230 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSAT+ + ++E L+ P R+ + + + Y + K A L ++L Sbjct: 231 FSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLSRVLDV 290 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I+FC + V L SL G+ A+HG + Q R +++ K + L+VA Sbjct: 291 EAPTA-AIVFCRTRTEVDELTLSLNGHGWRAHALHGGMSQEQRDRVIKQLKSHSADLLVA 349 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + HV NFDVPN E Y+HRIGRTGRAGR G A TLV + + + IE Sbjct: 350 TDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIE 409 Query: 362 KLIEKKVD 369 KL ++++ Sbjct: 410 KLTGQRIE 417 >gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121] gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121] Length = 617 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 151/374 (40%), Positives = 227/374 (60%), Gaps = 15/374 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL V+ AV+D GY +P+PIQ ++IP +L+ HD+ G AQTGTGKTA+F LP+L+ Sbjct: 10 FASLGLDANVLKAVVDQGYEQPSPIQAQSIPHLLEGHDLLGQAQTGTGKTAAFALPLLSR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + ++ L+L PTRELA QV++ F+ Y +N + V + GG+ ++ Q ++L R Sbjct: 70 INPKDKNTQL---LVLAPTRELAIQVSEAFQTYARNIPDFHVLPIYGGMSYDTQLRQLRR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH R L +++++ LV+DEAD ML MGFI ++ I P RQ Sbjct: 127 GVQVVVGTPGRVMDHIRRKTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPEQRQIA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS--KKCALLQQLL 239 LFSATM +++V+ L NPK +++ T ++T +I Y Q S K L ++L Sbjct: 187 LFSATMPSVIRQVANRHLNNPKEVKIVTKTATNTSI----TQKYWQVSGLHKLDALTRIL 242 Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D M IIF K V L L +G + A++G+I Q R + + K G I Sbjct: 243 EMSEHDGM---IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVERIKRGQID 299 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARGLDI + HV N+D+P E+Y+HRIGRTGRAGR G A VA + + + Sbjct: 300 ILVATDVVARGLDIDRISHVVNYDIPYDTESYVHRIGRTGRAGRTGNAILFVAHRERRML 359 Query: 358 DAIEKLIEKKVDWL 371 AIE+ + ++ + Sbjct: 360 QAIERATRQPIERM 373 >gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 539 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum] Length = 472 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/365 (39%), Positives = 224/365 (61%), Gaps = 2/365 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+P ++ A+ D + PTPIQ +TIP +++ DV G+AQTG+GKT F+LP L Sbjct: 1 MSFETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + + L+L PTRELA Q+ + +YGK LL+GG Q L Sbjct: 61 HRNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQIDFLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R D++I TPGR++DH RG + ++++ +V+DEADRMLDMGF+P ++ I + RQT Sbjct: 121 RPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL- 239 LLF+AT+ +Q +++ + ++P I + T S+ +I+ VA + ++K LL+ +L Sbjct: 181 LLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVA-ISHGAQKWGLLKTILT 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q T +IF K+ +L + L +GF A+HG+ Q R ++LS F+ G +++ Sbjct: 240 EPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V N+D+P E+Y+HRIGRTGRAGR G+A + D + Sbjct: 300 VATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRD 359 Query: 360 IEKLI 364 IE+L+ Sbjct: 360 IERLL 364 >gi|45659052|ref|YP_003138.1| ATP-dependent RNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602298|gb|AAS71775.1| ATP-dependent RNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 521 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 234/364 (64%), Gaps = 7/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F++L LS ++ A+L+ G+ + +PIQ + IP++L+ D+ G AQTGTGKTA+F +P + Sbjct: 9 LKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTI 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 +LE + + LIL PTREL QV++ F K K N V + GG E Q + L Sbjct: 69 ELLE---VESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRAL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH RG + ++ I+I+V+DEAD MLDMGF ++ I P RQ Sbjct: 126 RKNPQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQ 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T++FSATMTD++ + + F +P+ I+V +A IE + Q + K L +L+ Sbjct: 186 TIMFSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEI--QENAKGEALARLI 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +K ++FCN K V + L+ +G+ A+HG+++Q+ R K++S F++G+I+++ Sbjct: 244 EYRN-VKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A RG+D+ +V VFN+D+P E+Y+HRIGRTGRAG+ G AF+ + + I ++ Sbjct: 303 VATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKK 362 Query: 360 IEKL 363 IE++ Sbjct: 363 IERI 366 >gi|291086515|ref|ZP_06356033.2| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220] gi|291067655|gb|EFE05764.1| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220] Length = 658 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G+S A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia J2315] gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia J2315] Length = 514 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 229/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP+ + D+ + TG+GKTA+F+LP + Sbjct: 38 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIET 97 Query: 63 LEK-----------------GRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 98 FAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157 Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I P TRQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 218 LDMGFIEDIETIVDATPDTRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 277 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ D + IIF K + L L GF A Sbjct: 278 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 331 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 332 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 391 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 392 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 421 >gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142] gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142] Length = 480 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 225/369 (60%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS + + G+ PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP+L Sbjct: 3 ISFENLGLSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LIL PTRELA QVA+ + + L + + GG E Q + LE Sbjct: 63 EQIDTRNSNVQ---ALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLE 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D R KL+++++ V+DEAD ML MGFI ++ I P R T Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDARNT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM E++ + FL++P + V + I+ +SK+ AL Q +L+ Sbjct: 180 ACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKAL-QPILE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D ++ IIF K+ +L L++ G SV HGN+ Q R +++ F+EG I+L+V Sbjct: 239 IEDP-ESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFREGKIKLVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ ++ HV N+D+P+ +E YIHRIGRTGRAG+ G A +LV D + + I Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLVEPIDRRMVRQI 357 Query: 361 EKLIEKKVD 369 EK + +K++ Sbjct: 358 EKRLRQKLE 366 >gi|71907449|ref|YP_285036.1| helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] gi|71847070|gb|AAZ46566.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] Length = 447 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 223/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL+ ++ A+ GY PTPIQ + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFSSLGLAAPLLQALETLGYETPTPIQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPIL 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + +V R L+L PTRELA QV +F +YG++ ++ GG+ Q + Sbjct: 61 QRLSESEDKVASNSIRVLVLVPTRELAEQVHASFRQYGEHLAVSTYAAYGGVSINPQMMR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG DVL+ TPGR++D F + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRRGVDVLVATPGRLIDLFTQNAIKFKQVQTLVLDEADRMLDLGFAHELDTLFAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ +++ L++P IEV +ST + I+ V + + L Sbjct: 181 QTLLFSATFSDEIRSLAKGRLRDPLSIEVAPRNSTVKAIKQWVVPVDKKRKTELFL---F 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F ++ V L +L + AIHG+ Q +R++ L +FK G +Q+ Sbjct: 238 MRKDRKWGQVLVFVKTRRGVDELVATLLAKKIKADAIHGDKPQPARLRALESFKAGEVQI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N+D+P AE+YIHRIGRTGRAG G+A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPQVVNYDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEAPLLA 357 Query: 359 AIEKLIEK 366 AIE LI++ Sbjct: 358 AIETLIKQ 365 >gi|310644788|ref|YP_003949547.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2] gi|309249739|gb|ADO59306.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2] Length = 481 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 149/393 (37%), Positives = 232/393 (59%), Gaps = 12/393 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD LS ++V A+ GY PT IQ + IP+ L++ D+ +QTG+GKTA++ +P+ + Sbjct: 6 FADYPLSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPLCEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + P+ LIL PTRELA QV ++ G+ + L G PF Q +L++ Sbjct: 66 VDWNENK---PQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELKQR 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V + TPGR+LDH RG L +N I LVIDEAD ML+MGFI +Q+I +P R T+L Sbjct: 123 THVAVGTPGRVLDHIERGTLSLNRIAYLVIDEADEMLNMGFIEQVQSIIQALPNDRVTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT +++ K+S ++ +P IE+ T TI+H + + + K ALLQ LL + Sbjct: 183 FSATFPEDVAKLSRKYMNDPVEIEIKATGVTTATIDHSLIQ--VREADKLALLQDLLVVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC +++V L +L + IHG ++Q R ++++ F+ G + ++A+ Sbjct: 241 NP-DSCIIFCRTQEHVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG+ GKA TL+ +D K + IE Sbjct: 300 DVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAITLITPKDSKRLADIEA 359 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 I + + P E +D+ + + RK Sbjct: 360 YIGFAIPQVKA------PSEEAVDLHREDFERK 386 >gi|237807827|ref|YP_002892267.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis DSM 9187] gi|237500088|gb|ACQ92681.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 416 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 157/375 (41%), Positives = 222/375 (59%), Gaps = 5/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL ++ + GY TPIQ IP VL HDV AQTGTGKTA+F LP++ Sbjct: 1 MSFSTLGLHSDLLAVIDTLGYQTATPIQKAAIPEVLAGHDVMAGAQTGTGKTAAFALPLI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R L+L PTRELA QV +F KY + L + GG Q L Sbjct: 61 QRHLVRDTSEKAIRVLVLTPTRELAQQVHQSFVKYSQGLGLNSVVAYGGASINPQIDALN 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGR+L+ + + ++ +E LV+DEADRMLDMGFI I+ I +P TRQT Sbjct: 121 KGCDVLVATPGRLLELAFKELIDLSTVETLVLDEADRMLDMGFIVDIERILKRLPETRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSAT D++ +S+ L+ PK IEV ++ A IE F Q +K L+ L+ Sbjct: 181 LFFSATFNDDVFSLSKTILKQPKLIEVAERNAMAAKIEQRFYEVDNQ--RKAGLVAYLIG 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + +IF K+ V L LEK G S A+HG+ Q +R + L FK G ++ +V Sbjct: 239 SKN-WQQVLIFTRTKQAVDELAKELEKDGISAAAVHGDKSQGARDRGLEEFKTGQVRALV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + +V N+++P AE+YIHRIGRTGRAG+ G A +LV+ ++ ++ + Sbjct: 298 ATDVAARGLDIQQLQYVINYELPYNAEDYIHRIGRTGRAGQAGLAVSLVSNKEKYLLEDV 357 Query: 361 EKLIEKK--VDWLNG 373 EKL + + W+ G Sbjct: 358 EKLTGEHFILQWMEG 372 >gi|294828452|ref|NP_714230.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str. 56601] gi|293386306|gb|AAN51248.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str. 56601] Length = 516 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 234/364 (64%), Gaps = 7/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F++L LS ++ A+L+ G+ + +PIQ + IP++L+ D+ G AQTGTGKTA+F +P + Sbjct: 4 LKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTI 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 +LE + + LIL PTREL QV++ F K K N V + GG E Q + L Sbjct: 64 ELLE---VESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH RG + ++ I+I+V+DEAD MLDMGF ++ I P RQ Sbjct: 121 RKNPQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T++FSATMTD++ + + F +P+ I+V +A IE + Q + K L +L+ Sbjct: 181 TIMFSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEI--QENAKGEALARLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +K ++FCN K V + L+ +G+ A+HG+++Q+ R K++S F++G+I+++ Sbjct: 239 EYRN-VKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A RG+D+ +V VFN+D+P E+Y+HRIGRTGRAG+ G AF+ + + I ++ Sbjct: 298 VATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKK 357 Query: 360 IEKL 363 IE++ Sbjct: 358 IERI 361 >gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia MC0-3] Length = 514 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/390 (39%), Positives = 233/390 (59%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 38 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97 Query: 61 ------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 T ++ RA RVR P+ L+L PTRELA QV YGK+ Sbjct: 98 FAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157 Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 218 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLRDPERIEIQQRLESRANIA 277 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ D + IIF K + L L GF A Sbjct: 278 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 331 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 332 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 391 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 392 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 421 >gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054] gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia HI2424] gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU 1054] gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia HI2424] Length = 516 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/390 (39%), Positives = 233/390 (59%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 38 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97 Query: 61 ------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 T ++ RA RVR P+ L+L PTRELA QV YGK+ Sbjct: 98 FAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157 Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 218 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 277 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ D + IIF K + L L GF A Sbjct: 278 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 331 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 332 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 391 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 392 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 421 >gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio parahaemolyticus 16] gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio parahaemolyticus 16] Length = 419 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/388 (39%), Positives = 230/388 (59%), Gaps = 11/388 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL P ++ + G+ +PT +Q + IP VL+ DV AQTGTGKTA+F LP++ Sbjct: 5 FESLGLCPTILSTLSSLGFEQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPIIQK 64 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + A+ R P R L+L PTRELA QV DN +Y + L + GG Q + Sbjct: 65 LIESEAK-RDPQSNDVRALVLVPTRELAQQVFDNLVQYAQATELKIVAAYGGTSMNVQTR 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE+G D+LI TPGR++DH + + E LV+DEADRMLDMGF+P IQ I Sbjct: 124 NLEQGCDILIATPGRLIDHMFCKNVSLLKSEFLVLDEADRMLDMGFMPDIQRILKRFNAV 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL FSAT ++ ++ P ++V+ +STAET++ +K LL Sbjct: 184 RQTLFFSATFDKRIKNIAYKLQSEPVEVQVSASNSTAETVKQMVYPV--DKKRKAELLAY 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ S++ + ++F K+ L L+ G +I+G+ Q +R K L +FK G I+ Sbjct: 242 LIGSRN-WQQVLVFTKTKQGSDALVKELKLDGIKAASINGDKSQGARQKALDDFKAGKIR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++A+D+AARGLDI ++ V NFD+P +AE+Y+HRIGRTGRAG+ G A + +++++ + Sbjct: 301 ALIATDVAARGLDIQELEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSFMSRDEHYLL 360 Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLE 383 +AIE+L++ ++ +WL G SL +E Sbjct: 361 EAIERLLDTRLPQEWLQGFEPSLVEEVE 388 >gi|15601523|ref|NP_233154.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121590875|ref|ZP_01678199.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80] gi|121728661|ref|ZP_01681679.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V52] gi|147671636|ref|YP_001215545.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395] gi|153818645|ref|ZP_01971312.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457] gi|153820657|ref|ZP_01973324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae B33] gi|229506074|ref|ZP_04395583.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286] gi|229510069|ref|ZP_04399549.1| ATP-dependent RNA helicase [Vibrio cholerae B33] gi|229605606|ref|YP_002876310.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236] gi|254849928|ref|ZP_05239278.1| ATP-dependent RNA helicase [Vibrio cholerae MO10] gi|255746472|ref|ZP_05420419.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101] gi|262152368|ref|ZP_06028501.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1] gi|262168609|ref|ZP_06036305.1| ATP-dependent RNA helicase [Vibrio cholerae RC27] gi|9658191|gb|AAF96666.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547282|gb|EAX57403.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80] gi|121629072|gb|EAX61518.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V52] gi|126510798|gb|EAZ73392.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457] gi|126521700|gb|EAZ78923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae B33] gi|146314019|gb|ABQ18559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae O395] gi|227015171|gb|ACP11380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395] gi|229352514|gb|EEO17454.1| ATP-dependent RNA helicase [Vibrio cholerae B33] gi|229356425|gb|EEO21343.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286] gi|229372092|gb|ACQ62514.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236] gi|254845633|gb|EET24047.1| ATP-dependent RNA helicase [Vibrio cholerae MO10] gi|255736226|gb|EET91624.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101] gi|262023138|gb|EEY41843.1| ATP-dependent RNA helicase [Vibrio cholerae RC27] gi|262030819|gb|EEY49450.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1] Length = 422 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 148/379 (39%), Positives = 230/379 (60%), Gaps = 9/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGL +++ + + G PTPIQ + IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 6 ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65 Query: 61 T-ILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +E+ R + R L+L PTRELA QV D+ + Y K L + + GG + Q Sbjct: 66 QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D+LI TPGR+LDH + L + +E+LV+DEADRMLDMGF+P +Q + + Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT +++ V+ +++P ++V +STAET++ +K LL Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV--DKKRKRELLS 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F ++ L L+ G +I+G+ Q +R K L +FK G + Sbjct: 244 YLIGSKN-WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V N+D+P +AE+Y+HRIGRTGRAG G A +L++ ++ Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362 Query: 357 IDAIEKLIEKKV--DWLNG 373 ++AIE+L+ ++ +WL G Sbjct: 363 LEAIERLLNTRLPQEWLKG 381 >gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J] gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J] Length = 561 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 229/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 23 LKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 82 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G++ + V + GG + Q K L+ Sbjct: 83 N---KIRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALK 139 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L ++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 140 SGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPSERQT 199 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F++NP+ +++ T +E +V Q +K + +L+ Sbjct: 200 LLFSATMPAPIKEIGVKFMKNPEHVQIKNKELTNVNVEQFYVRVKEQ--EKFDTMTRLMD 257 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 258 V-DQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILV 316 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 317 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGESITFVSPNEMGYLSMI 376 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 377 ENLTKKQMKPL 387 >gi|254714133|ref|ZP_05175944.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] gi|254716809|ref|ZP_05178620.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] Length = 535 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1] gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1] Length = 524 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 152/387 (39%), Positives = 229/387 (59%), Gaps = 31/387 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 42 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101 Query: 61 -TILEKGRAR-----------------VRMPRTLILEPTRELAAQVADNFEKYGKNYN-L 101 L+K +A+ V P L+L PTRELA QV YGK+ L Sbjct: 102 FAQLQKTQAQQPREPQSGDRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRL 161 Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161 ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRMLDM Sbjct: 162 RTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDM 221 Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAETI 217 GFI I+ I + P TRQT+LFSAT+ ++ ++ L+ P+RIE+ ++ A+T+ Sbjct: 222 GFIDDIETIVAATPATRQTMLFSATLDGKIGSLTSRLLKEPERIEIVQKLEARTNIAQTV 281 Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 + K LL LL+ D + IIF K + L L GF A+HG Sbjct: 282 HYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAALHG 335 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 ++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGRTG Sbjct: 336 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 395 Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RAGR G A +LV + + IE+ + Sbjct: 396 RAGRSGIAVSLVHHAEQGALKRIERFV 422 >gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida F1] gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1] Length = 443 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA LGL ++ + Y PTP+Q K IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV +N +Y +N L+ + GG+ Q + Sbjct: 61 QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD F + + N ++ LV+DEADRMLD+GF +Q++ + +P R Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++ ++ L +P IEV+ ++TA +++ V +K L L Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPV--DKKRKADLFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q K ++F + V L L +G + IHG+ Q +R + L +FK +Q+ Sbjct: 239 LRKQ-RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357 Query: 359 AIEKLIEK 366 AIE L + Sbjct: 358 AIEVLTRQ 365 >gi|200386509|ref|ZP_03213121.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603607|gb|EDZ02152.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 629 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 233/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMSGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1] gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1] Length = 634 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ IP +L D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 L + R P+ ++L PTRELA QVA + G+N N L V + GG Q + L Sbjct: 66 NKLNLDQ---RKPQAVVLAPTRELAIQVAAEMKNLGQNINGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P T Q Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPETAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+K+ + FL+ P+ ++V + T + +E F +K + +LL Sbjct: 183 RVLFSATMPPMLKKIVDRFLREPEYVDVAGKNHTVDKVEQQFWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 584 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 221/369 (59%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL + A+ + GY +PTPIQ ++I L+L +D+ AQTGTGKTA+F LP + Sbjct: 4 FTELGLGEATLRAITELGYEEPTPIQAQSIGLMLSGNDIIAQAQTGTGKTAAFSLPTIER 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ V+ LIL PTRELA QV+D YGK N+ + GG P + Q + L+RG Sbjct: 64 IDPKAMGVQ---ALILTPTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQLRALKRG 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++I TPGR++DH RG L ++ + +V+DEAD ML+MGF+ I+ I P RQT L Sbjct: 121 VNIVIGTPGRLMDHMERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYILERAPKDRQTAL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 +SATM DE+ +++ +L++P+ + + T I + A+ K +L ++L Sbjct: 181 YSATMPDEIARLARKYLRSPQMVTIEREQLTVPQIRQVYYEIGAR--DKFEVLTRIL-DL 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC K V L L +G+ +HG++ Q R +++ F+E ++++VA+ Sbjct: 238 EMPTSAIIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV N+D+P E Y+HRIGRTGRAGR G A TLV + + + IE+ Sbjct: 298 DVAARGLDIEHVSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRTIER 357 Query: 363 LIEKKVDWL 371 + + L Sbjct: 358 MTGAPIQRL 366 >gi|224585078|ref|YP_002638877.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469606|gb|ACN47436.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 626 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|283851662|ref|ZP_06368941.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B] gi|283572992|gb|EFC20973.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B] Length = 492 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 147/368 (39%), Positives = 215/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L + + GY PTPIQ + IP V + D+ G+AQTGTGKTA+F+LP++ Sbjct: 1 MSFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L ++ R R LIL PTRELA Q+ G+ L A++ GG+ Q + L Sbjct: 61 HRLMTTKSEKRGVRALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ PGR+LDH N+G + + +E LV+DEAD M DMGF+P I+ I S +P RQT Sbjct: 121 QGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ L +P + + + + T+EH +++K LL LL+ Sbjct: 181 LLFSATMPPAISGLAHETLTDPVTVRIGHMAPLS-TVEHAIYPI--SHTQKAPLLLHLLE 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ I+F K NL L + G + GN+ QR R + F+ G+ Q++V Sbjct: 238 -EAGKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ VGHV NFD+P+ AE Y HRIGRTGRA G+A T V ED+ + AI Sbjct: 297 ATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAI 356 Query: 361 EKLIEKKV 368 E ++K + Sbjct: 357 ESHMKKPL 364 >gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394] gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394] Length = 539 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFIEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096] gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096] Length = 416 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 227/368 (61%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKV 368 E L +K++ Sbjct: 355 ENLTKKQM 362 >gi|39546364|ref|NP_462193.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415212|ref|YP_152287.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161616286|ref|YP_001590251.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|162139541|ref|YP_218208.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167552072|ref|ZP_02345825.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990155|ref|ZP_02571255.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231889|ref|ZP_02656947.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237981|ref|ZP_02663039.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243114|ref|ZP_02668046.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262709|ref|ZP_02684682.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168819651|ref|ZP_02831651.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194447369|ref|YP_002047310.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470855|ref|ZP_03076839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736232|ref|YP_002116230.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249912|ref|YP_002148207.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265213|ref|ZP_03165287.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364142|ref|YP_002143779.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204928320|ref|ZP_03219520.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238910075|ref|ZP_04653912.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56129469|gb|AAV78975.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161365650|gb|ABX69418.1| hypothetical protein SPAB_04091 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405673|gb|ACF65892.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457219|gb|EDX46058.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711734|gb|ACF90955.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197095619|emb|CAR61187.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213615|gb|ACH51012.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243468|gb|EDY26088.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289140|gb|EDY28509.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322642|gb|EDZ07839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323189|gb|EDZ11028.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331110|gb|EDZ17874.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333912|gb|EDZ20676.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337772|gb|EDZ24536.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343559|gb|EDZ30323.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348425|gb|EDZ35056.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267995476|gb|ACY90361.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312914306|dbj|BAJ38280.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087727|emb|CBY97491.1| Cold-shock DEAD box protein A homolog; ATP-dependent RNA helicase deaD homolog [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225964|gb|EFX51018.1| Cold-shock DEAD-box protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615285|gb|EFY12206.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618356|gb|EFY15247.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622839|gb|EFY19683.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626839|gb|EFY23636.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631408|gb|EFY28168.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635325|gb|EFY32039.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643460|gb|EFY40023.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647104|gb|EFY43605.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648907|gb|EFY45352.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655099|gb|EFY51410.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657702|gb|EFY53970.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664198|gb|EFY60396.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667481|gb|EFY63643.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674729|gb|EFY70821.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675638|gb|EFY71711.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682274|gb|EFY78297.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684877|gb|EFY80875.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716278|gb|EFZ07849.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323191728|gb|EFZ76980.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199035|gb|EFZ84132.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204265|gb|EFZ89274.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207612|gb|EFZ92559.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211335|gb|EFZ96179.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214723|gb|EFZ99472.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323224056|gb|EGA08349.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230295|gb|EGA14414.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233271|gb|EGA17365.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239308|gb|EGA23358.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242441|gb|EGA26467.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246951|gb|EGA30917.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254116|gb|EGA37936.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255233|gb|EGA39010.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262696|gb|EGA46252.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264006|gb|EGA47514.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269392|gb|EGA52847.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 629 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus pyogenes M49 591] Length = 385 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|168463497|ref|ZP_02697414.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633290|gb|EDX51704.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 629 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|284929206|ref|YP_003421728.1| superfamily I DNA/RNA helicaseI [cyanobacterium UCYN-A] gi|284809650|gb|ADB95347.1| DNA/RNA helicase, superfamily II [cyanobacterium UCYN-A] Length = 477 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 226/369 (61%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS V + + G+ PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP Sbjct: 3 ISFENLGLSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLP-- 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + + LIL PTRELA QVA+ + + L + + GG + Q + LE Sbjct: 61 -ILEKVDIQDPSVQVLILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQIRSLE 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D R KL+++++ V+DEAD ML MGFI ++ I P +R T Sbjct: 120 RGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRST 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM E++++ FL++P I V + IE +SK+ AL Q +L+ Sbjct: 180 ACFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKAL-QPVLE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D ++ IIF K+ +L L++ G V HGN+ Q R +++ F++G I+L+V Sbjct: 239 IEDP-ESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P+ +E YIHRIGRTGRAG+ GKA ++V D + I I Sbjct: 298 ATDIAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQI 357 Query: 361 EKLIEKKVD 369 E+ + +K+D Sbjct: 358 ERKLRQKID 366 >gi|255020706|ref|ZP_05292767.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756] gi|254969860|gb|EET27361.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756] Length = 615 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 221/363 (60%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+D L+ + AV + GY +P+PIQ ++IP +L DV G+AQTGTGKTA+F LP+L Sbjct: 10 LSFSDFALAEPLQRAVREIGYEQPSPIQAQSIPPLLAGRDVIGLAQTGTGKTAAFALPLL 69 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ +R P+ L+L PTRELA QVA+ + Y K V + GG Q K+L Sbjct: 70 SRVDLS---LRFPQILVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQSMGLQLKQL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGRI DH R L ++ ++ +V+DEAD ML MGFI ++ I P RQ Sbjct: 127 QRGVQVVVGTPGRIQDHLRRETLKLDRLQAVVLDEADEMLRMGFIDAVEEILKHTPTQRQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM + +++++ +L++P I + + +ST I + + K L ++L Sbjct: 187 VALFSATMPEAIRRIARTYLRDPLEIRIKSTTSTVAAIRQRYWLVSGTH--KLDALTRIL 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D+ IIF K V L LE +G++ A++G++ Q R + + K G++ ++ Sbjct: 245 EVEDS-NAWIIFVRTKTATVELAERLEARGYACGALNGDMTQAMREQTIERVKSGSLDIV 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+PN E Y+HRIGRTGRAGR G+A VA + + A Sbjct: 304 VATDVAARGLDVERITHVINYDIPNDTEAYVHRIGRTGRAGRKGEAILFVAPRERYLLKA 363 Query: 360 IEK 362 IE+ Sbjct: 364 IER 366 >gi|163843319|ref|YP_001627723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis ATCC 23445] gi|163674042|gb|ABY38153.1| DEAD/DEAH box helicase domain protein [Brucella suis ATCC 23445] Length = 535 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 231/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ++ IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQMQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|24216134|ref|NP_713615.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str. 56601] gi|45656634|ref|YP_000720.1| ATP-dependent RNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24197378|gb|AAN50633.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str. 56601] gi|45599869|gb|AAS69357.1| ATP-dependent RNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 540 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 161/445 (36%), Positives = 257/445 (57%), Gaps = 24/445 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + PK++ A+ + GY + TPIQ K+IP L+ D+ G+AQTGTGKT +F++P++ Sbjct: 1 MKFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVI 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKK 118 IL KG ++ L+L PTREL Q+A+ +K K+ ++ +IGG +++QNK Sbjct: 61 HNILTKG---IQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQNKD 117 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE +++ TPGR++D G + ++N+E V+DEADRMLDMGFI I+ + + Sbjct: 118 LEGLNGIIVATPGRLIDMIKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRK 177 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLL+SAT++ E+ +++ FL P I++N E I+ V + +K + L Sbjct: 178 QTLLYSATLSVEVMRLAYRFLNEPVEIQINPEKIITERIDQKIV--HLGREEKIPYMTNL 235 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + GIIF N K N+ + ++L K G V I +DQ+ R+++L +FK G + Sbjct: 236 IINSKEEGQGIIFTNYKANIPKIVYTLRKYGVPVTGISSELDQKKRLRLLRDFKSGKYRY 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+A+RG+D+ ++ V+N+D+P ENY+HRIGRT RAGR GKA ++ D ++ Sbjct: 296 MVATDVASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRKGKAIGFCSESDYVELE 355 Query: 359 AIEKLIEKKVDWLN----------GDLSSL----NPPLEKIDIAQHNHAR--KNNPIPQK 402 IEK +++K++ L GD S + EK + N R N+ P K Sbjct: 356 KIEKYLKQKIEILEVNEEYIQFPAGDFQSFIGGDSYDREKETHFKQNGKRPHDNDRAPHK 415 Query: 403 STGFDRRKKNYSSQKSHIPLKESEK 427 +R K ++S +H K+S K Sbjct: 416 HDRNRKRDKRHTSH-THSTAKDSHK 439 >gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46] gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46] Length = 702 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/361 (39%), Positives = 221/361 (61%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L +V AV G+ P+PIQ TIP ++ DV G+AQTGTGKTA+F LP+L Sbjct: 63 FDELELPDDIVNAVRKVGFETPSPIQAATIPTLMSGRDVVGLAQTGTGKTAAFALPILAR 122 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 +++ VR P+ L+L PTRELA QVAD+F+ + + + V + GG + Q L R Sbjct: 123 IDRS---VRAPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQSYGVQLSGLRR 179 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH +G L ++++ LV+DEAD ML MGF ++ I + P +Q Sbjct: 180 GAQIIVGTPGRVIDHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVERILADTPDDKQVA 239 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++S+ +L P+ I V + + TA+ I F+ + K L ++L+ Sbjct: 240 LFSATMPASIRRLSKQYLTEPEEITVKSQTRTADNIRQRFL--MVSHRNKLDALTRILEV 297 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + I+F K L L +GFS AI+G+I Q R + + K+G + ++VA Sbjct: 298 EE-FEAMIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDILVA 356 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G+A V + + + +IE Sbjct: 357 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVTPREGRLLRSIE 416 Query: 362 K 362 + Sbjct: 417 R 417 >gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida BIRD-1] Length = 443 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA LGL ++ + Y PTP+Q K IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV +N +Y +N L+ + GG+ Q + Sbjct: 61 QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD F + + N ++ LV+DEADRMLD+GF +Q++ + +P R Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++ ++ L +P IEV+ ++TA +++ V +K L L Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPV--DKKRKADLFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q K ++F + V L L +G + IHG+ Q +R + L +FK +Q+ Sbjct: 239 LRKQ-RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357 Query: 359 AIEKLIEK 366 AIE L + Sbjct: 358 AIEVLTRQ 365 >gi|212636948|ref|YP_002313473.1| ATP-dependent RNA helicase SrmB [Shewanella piezotolerans WP3] gi|212558432|gb|ACJ30886.1| Helicase, DEAD box [Shewanella piezotolerans WP3] Length = 410 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 228/368 (61%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L P ++ ++ G+ KPT IQ +TIP+ +++ D+ A TGTGKTASF+LP L Sbjct: 4 MLFEDLQLDPCLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPAL 63 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I++ R R L+L PTRELA+Q+ + +L ++++ GG+P+ Q + L Sbjct: 64 QHIIDFPRRFGGQARVLVLTPTRELASQIHRYASHLATDLDLDISIITGGVPYAPQEEAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++ D+L+ TPGR++++ ++G +E+LVIDEADRMLDMGF ++ I +Q Sbjct: 124 KKNVDILVATPGRLMEYLDKGLFNAEEVEVLVIDEADRMLDMGFSAVVETIAIESVGRKQ 183 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T+LFSAT+ ++ + S L NP ++E P S I H +V K ALL + Sbjct: 184 TMLFSATLEGSDVGRFSHQLLSNPVKLEAEAPRSEKAKI-HQWVHIADDREHKFALLYAI 242 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ Q+ ++ I+F ++ V +L L+KQG + + G+++Q++R + L F +G + + Sbjct: 243 LQ-QEEVERAIVFVKTREAVASLDGLLQKQGITCSFMRGDMEQKARFQALGRFTKGEVNV 301 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ D+ HV NFD+P A+ Y+HRIGRTGRAG G A +LV DI+ + Sbjct: 302 LLATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVG 361 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 362 KIERYIEQ 369 >gi|213579752|ref|ZP_03361578.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 556 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL B-30929] Length = 506 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 153/412 (37%), Positives = 242/412 (58%), Gaps = 14/412 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ ++G+ + TPIQ +TIP+VL+ DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFSELGLSDHLLTAINNSGFEEATPIQGETIPMVLKGEDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LI+ PTRELA Q + + GK+ V ++ GG Q L+ Sbjct: 61 QKIDFDNPNVQ---ALIISPTRELAIQTQEEIYRLGKDEKAKVQVVYGGADIRRQINALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGRILDH R L + +++ LV+DEAD ML+MGF+ I++I P RQT Sbjct: 118 GHPQIVVGTPGRILDHIRRHTLKLEHVKTLVLDEADEMLNMGFLDDIEDIIKQTPKERQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++V F+++P ++ + T + I+ +V + +K + + Sbjct: 178 LLFSATMPAQIKRVGVQFMRDPHQVTIKAKELTTDLIDQYYVR--VKEYEKFDTMTRFFD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD + I+FC K+ V + L+ +G+ +HG++ Q R +I+ FK I ++V Sbjct: 236 VQDP-EVTIVFCRTKRRVDEVSKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI V HV+N+D+P + Y+HR+GRTGRAG+HG + T ++ ++ I Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDYLREI 354 Query: 361 EKLIEKKVDWLNGDLSSLNPP-LEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 EKL KV L L PP +++ + Q N A + K T D+ +K Sbjct: 355 EKLT--KVRML-----PLKPPTIQEAFVGQLNSAESDIADLIKKTNTDKYEK 399 >gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma proteobacterium HTCC2148] gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma proteobacterium HTCC2148] Length = 618 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 214/361 (59%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L LS + A+ D GY P+ IQ TIP +++ DV G AQTGTGKTA+F LP+L Sbjct: 10 FAELALSEPLQKALADVGYETPSAIQAATIPALIEGRDVLGQAQTGTGKTAAFALPILAQ 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ A + P+ L+L PTRELA QVA+ F+KY + + V + GG + Q ++L+R Sbjct: 70 LQ---ASSKKPQVLVLAPTRELAIQVAEAFQKYARYLKDFHVVPIYGGADYRGQLRQLQR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L ++ + LV+DEAD ML MGFI ++ I P RQ Sbjct: 127 GVQVVVGTPGRVMDHMRRGSLDLSALRTLVLDEADEMLRMGFIDDVEWILEQTPDDRQIA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++ L NP + + + T ++I + K L ++L+ Sbjct: 187 LFSATMPTAIARIAKQHLNNPVHVAIEVQTMTNKSIRQRVWMMAGVH--KLDALTRILEV 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F + + L +G+S A++G+I Q+ R + N K GTI ++VA Sbjct: 245 ED-FDGVIVFVRTRIATAEIAEKLAARGYSAAALNGDIPQKQREATIDNLKRGTIDILVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E Y+HRIGRTGRAGR G A A + + + AIE Sbjct: 304 TDVAARGLDVERISHVINYDIPYDVEAYVHRIGRTGRAGREGDAILFAANRERRLLRAIE 363 Query: 362 K 362 K Sbjct: 364 K 364 >gi|17987217|ref|NP_539851.1| ATP-dependent RNA helicase RHLE [Brucella melitensis bv. 1 str. 16M] gi|225852555|ref|YP_002732788.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis ATCC 23457] gi|256044711|ref|ZP_05447615.1| DEAD/DEAH box helicase domain protein [Brucella melitensis bv. 1 str. Rev.1] gi|17982889|gb|AAL52115.1| ATP-dependent RNA helicase rhle [Brucella melitensis bv. 1 str. 16M] gi|225640920|gb|ACO00834.1| DEAD/DEAH box helicase domain protein [Brucella melitensis ATCC 23457] Length = 535 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|256113603|ref|ZP_05454423.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 535 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916] gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916] Length = 599 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 225/369 (60%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G S +V + + GY +P+PIQ P ++ D+ G AQTGTGKTA+F LP+L Sbjct: 45 FAGFGFSEALVKTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 104 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+K + P+ L+L PTRELA QVA++F+ Y + +L V + GG F +Q L+R Sbjct: 105 LQKDATK---PQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGGSDFRSQIHALKR 161 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR++DH +G L + LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 162 GVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVV 221 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E++++S+ +L+ P I + T A I + C Q S K L ++L+ Sbjct: 222 LFSATMPSEIRRLSKRYLREPAEITIKTKEKEARRIRQRCITL---QNSHKLEALNRVLE 278 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + T + IIF K +N+ SLE G V ++G++ Q R + + ++GT+ ++V Sbjct: 279 AV-TGEGVIIFARTKAITLNVSESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILV 337 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A V + + ++ + Sbjct: 338 ATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNNL 397 Query: 361 EKLIEKKVD 369 E+ + ++++ Sbjct: 398 ERAVGQEIE 406 >gi|226940616|ref|YP_002795690.1| ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9] gi|226715543|gb|ACO74681.1| Putative ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9] Length = 520 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 153/384 (39%), Positives = 228/384 (59%), Gaps = 10/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA LGL ++V A+ PTP+Q + +PL+L D+ AQTGTGKTA+F+LP L+ Sbjct: 6 FAALGLDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLLPALSR 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLE 120 +L + AR R PR L+L PTREL QVA +++ K + VA +IGG F QN+ L Sbjct: 66 LLVEPVARSRGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQNQMLT 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R +V++ TPGR++D G++ + +E+LV+DEADRMLDMGF + I S +P RQT Sbjct: 126 RPIEVMVATPGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLPKARQT 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQL 238 F+ATMT + ++ L P +IE+ ++ E IE FV K L++ + Sbjct: 186 AFFTATMTRRVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVD---DIDHKRRLVRHI 242 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L SQ +K I+F K++ L L G A+HG++ QR R + L+ + G ++ Sbjct: 243 L-SQPDVKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEV 301 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ + HV NFD+P AE+Y+HR+GRTGRAG G A +LV ++D + Sbjct: 302 LVATDVAARGIDVAGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSLVGRQDAFPLK 361 Query: 359 AIEKLIEKK--VDWLNGDLSSLNP 380 IE+ +K V + G ++ P Sbjct: 362 KIERFTGQKLIVTEIEGMIARFKP 385 >gi|194446047|ref|YP_002042538.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404710|gb|ACF64932.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 629 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 539 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R L+++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|254719124|ref|ZP_05180935.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] Length = 535 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1] gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1] Length = 446 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 153/365 (41%), Positives = 218/365 (59%), Gaps = 5/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ ++ GY PTP+Q + IP+VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPVVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L E + R LIL PTRELA QV + +Y +N L + GG+ Q K Sbjct: 61 QLLAMEGPKVTANSVRALILVPTRELAEQVHEAVRQYAENLPLRTYAVYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D+L+ TPGR+LD F + L N ++ LV+DEADRMLD+GF + NI +P R Sbjct: 121 LRGGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYRALPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++ ++ L +P+ IEV+ + A T++ V +K L L Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPQSIEVSPRNVAANTVKQWVVTV--DKKRKPELFVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++ K ++F + V L L+ G + IHG+ Q +R + L FK +Q+ Sbjct: 239 MR-KNKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V NFD+P AE+YIHRIGRTGRAG G+A +LV +++ + Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNMLS 357 Query: 359 AIEKL 363 AIE L Sbjct: 358 AIEML 362 >gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM 44385] gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length = 823 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 139/360 (38%), Positives = 225/360 (62%), Gaps = 11/360 (3%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74 AV G+ P+PIQ TIP++ Q DV G+AQTGTGKTA+F LP+L+ L++ + + P+ Sbjct: 168 AVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQ---KKPQ 224 Query: 75 TLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 L+L PTRELA QVAD F+++ + + V + GG + Q L RGA +++ TPGR+ Sbjct: 225 ALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRV 284 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193 +DH RG L ++ ++ LV+DEAD ML+MGF ++ I + P +QT LFSATM +++ Sbjct: 285 IDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIRR 344 Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ--DTMKNGIIF 251 +S+ +L++P+ + + + TA+ I ++ Y K L ++L+ D M I+F Sbjct: 345 LSKQYLEDPREVTIKSQQRTADNIHQQYLLVNHHY--KLDALTRILEVTEFDAM---IMF 399 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 K+N L L +GFS AI+G++ Q R + + ++G + ++VA+D+AARGLD+ Sbjct: 400 ARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDV 459 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371 + HV N+D+P+ E+Y+HRIGRTGRAGR G+A V + + + +IE+ + ++ + Sbjct: 460 ERISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEM 519 >gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 583 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 230/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL ++ A+ +AG+ +P+P+Q + IPLVLQ HD+ AQTGTGKTA+F LP +++ Sbjct: 4 FESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPTMSM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + RV++ L++ PTRELA QV+D G+ + + GG + Q +E+G Sbjct: 64 IDANQNRVQL---LVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQIGLIEKG 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A V++ TPGR+LD G+L +++V+DEAD MLDMGF+ I+ I + +P RQTLL Sbjct: 121 ASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM + +++++ L PK + + TP +T E IE + +Y + A+++ LL Sbjct: 181 FSATMPEPIKRLASKILHEPKFVSI-TPKDHTTNEDIEQLYYVI-NEYERDDAMIR-LLD 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + K+ I+FC KK V L L G++ +HG+++Q R ++ F+ I+++V Sbjct: 238 ALEPEKS-IVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGL++ D+ HVFN+ +P E+Y+HRIGRTGRAG+ G A TLV + + I Sbjct: 297 ATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRI 356 Query: 361 EKLIEKKVD 369 K + K++ Sbjct: 357 GKKVGSKIE 365 >gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like [Chlorobium chlorochromatii CaD3] gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3] Length = 640 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 158/427 (37%), Positives = 246/427 (57%), Gaps = 21/427 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L ++ A+ + GY PTPIQ +TIP +L DV G AQTGTGKTA+F LP+L Sbjct: 11 NFFSLQLPELLMKALEEVGYESPTPIQAQTIPFLLAGRDVLGQAQTGTGKTAAFALPILA 70 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ +A P+ L+L PTRELA QVA+ F++Y + V + GG + Q + L Sbjct: 71 SIDIQQAE---PQALVLAPTRELAIQVAEAFQRYAEYLKGFHVVPIYGGQDYGIQFRMLR 127 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++DH RG L + +++ LV+DEAD ML MGFI ++ I P RQ Sbjct: 128 RGVQVVVGTPGRVMDHIRRGSLNLTHLKTLVLDEADEMLRMGFIDDVEWILEQTPAGRQV 187 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++++ +L P + + T ++T +TI + S K +L ++L+ Sbjct: 188 ALFSATMPPPIRRIAQKYLDQPAEVTIQTKTTTVDTIRQRYWVVGG--SHKLDILTRILE 245 Query: 241 SQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + D M IIF K + L L+ +G++ A++G++ Q R + + K G I + Sbjct: 246 VEPFDGM---IIFSRTKTMTIELAEKLQARGYAAAALNGDMPQNQRERTIEQLKNGNINI 302 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A VA + + Sbjct: 303 VVATDVAARGLDVERISHVVNYDIPSDTESYVHRIGRTGRAGRAGDAILFVAPREKNMLY 362 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID---IAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 AIEK +++ + + P E I+ IA+ N R ++ I + GF R Sbjct: 363 AIEKATRSRIEQM------VLPTTEVINNKRIAKFNQ-RISDTIAAEDLGFFTRMIEQYC 415 Query: 416 QKSHIPL 422 + ++P+ Sbjct: 416 NEHNVPM 422 >gi|229823669|ref|ZP_04449738.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271] gi|229786906|gb|EEP23020.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271] Length = 518 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 152/409 (37%), Positives = 241/409 (58%), Gaps = 20/409 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ ++ D G+ +PTPIQ + +P+ L+ D+ G AQTGTGKTA+F LPML Sbjct: 1 MKFTELNLIQPLLDSLADMGFEEPTPIQQQAVPVALEGQDLIGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+K ++ ++ L++ PTRELA QV + + GK + ++ GG Q + ++ Sbjct: 61 NKLDKNQSAIQ---GLVVAPTRELAIQVQEELYRLGKYQRARIYVVYGGSSIGKQIEWIK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 R +++ TPGRILD R L + +++ LV+DEAD ML+MGFI ++ I + P +RQ Sbjct: 118 RNQPQIVVGTPGRILDLMRRKALSLKHLKTLVLDEADEMLNMGFIEDVKEIVATTPASRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E++ +++ FL+ P +++ TA+ IE F+ + +K + +LL Sbjct: 178 TLLFSATMPPEIRSLADQFLKEPAHVKIEAKQMTADLIEQFFIK--CRDDEKFDIFTRLL 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q I+FC KK V + L +G++ IHG+I Q+ R +++ F++G ++L+ Sbjct: 236 DVQ-MPTQAIVFCRTKKRVDEVARGLSLRGYNAELIHGDIPQQKRTSVINAFRQGQVELL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG G + T V ++ ++ Sbjct: 295 VATDVAARGLDISGVTHVYNYDISQDPESYVHRIGRTGRAGNEGMSITFVTPAEMSYLRV 354 Query: 360 IEKLIEKKVDWLN---------GDLSS----LNPPLEKIDIAQHNHARK 395 IE L K++ + G + S LN LE D +H + K Sbjct: 355 IEDLTRKRMQPMKPPTLKEAQAGQVQSLIDQLNETLEAGDADEHRNTAK 403 >gi|319405915|emb|CBI79547.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3] Length = 430 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 230/370 (62%), Gaps = 8/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+LGLS +V + AG KP IQ + IP++L+ HD+ GIAQTG+GKT +F LP+L Sbjct: 9 FAELGLSSLLVKNLFIAGMHKPKLIQERAIPVMLKGHDILGIAQTGSGKTLAFSLPILNR 68 Query: 62 ILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G R + R LIL PTRELA Q+ + K +L+ L++GG+ Q +++ Sbjct: 69 ILALGDKRHPKTARALILVPTRELAIQIEEAISAVAKGTHLSTCLILGGMSRLTQIRRMA 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR++D + ++ ++DEADRMLDMGFI ++ I + + QT Sbjct: 129 KGVDILVATPGRLIDLIRSKYVDLSKSRFFILDEADRMLDMGFINDVRQIANFLHKKCQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM+ E+ +++N L+ P +IEV + +TA I S+K ++L +LL Sbjct: 189 ALFSATMSKEVNVLADNLLKKPVKIEVVSQGTTAAEITQVLYCV--STSEKKSVLGKLL- 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + I+F K ++ SL K G+SV IHGN Q +R + L +F+EG ++++V Sbjct: 246 TNPALASVIVFIRTKHGADSVARSLAKTGYSVATIHGNKSQNARQRALKDFREGLVRVLV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID-- 358 A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G A TL E I+ + Sbjct: 306 ATDIAARGIDIPRISHVINYDLPDNAESYVHRIGRTGRNSASGDAITLF-DEKIEQVRLC 364 Query: 359 AIEKLIEKKV 368 AIE+LI K+ Sbjct: 365 AIERLIRMKI 374 >gi|212637255|ref|YP_002313780.1| DEAD box helicase [Shewanella piezotolerans WP3] gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella piezotolerans WP3] Length = 611 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 229/371 (61%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL+ ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNS 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ P+ L+L PTRELA QVA+ F Y K L V + GG Q L R Sbjct: 68 IDPN---TNSPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH RG L + +++ +V+DEAD ML MGFI I+ I P RQ Sbjct: 125 GPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ +L P +++ ++T ETIE FV +Q++K AL++ +L+ Sbjct: 185 LFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQV-SQHNKLEALVR-VLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 243 EKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361 Query: 362 KLIEKKVDWLN 372 + + ++ ++ Sbjct: 362 RATKSRISPMD 372 >gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65] gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65] Length = 614 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 224/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++ A+ + GY +P+PIQ ++IP +L+ DV G+AQTGTGKTA+F LP+L Sbjct: 8 FASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPLLA- 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 + + VR P+ L+L PTRELA QVA E Y K+ N+ VA + GG F +Q + L++ Sbjct: 67 --RTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++ TPGR++DH RG L + I +V+DEAD ML MGFI + + VP RQ Sbjct: 125 GPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++ V+E L+ P I + + ++T E+IE + K ALL+ S Sbjct: 185 LFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKG-VDKNQALLRICETS 243 Query: 242 Q-DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D M ++F K+ + + G A++G++ Q R + + K+G + ++V Sbjct: 244 EFDAM---MVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 301 ATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTI 360 Query: 361 EKLIEKKV 368 E++ KK+ Sbjct: 361 ERVTRKKI 368 >gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9] gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9] Length = 442 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 154/376 (40%), Positives = 225/376 (59%), Gaps = 8/376 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D G K++ + GY TPIQ + +L+ D+ G AQTGTGKTA+F LP+L Sbjct: 5 NFKDFGFHSKILENISKTGYEYATPIQALSFEPILEGRDIMGAAQTGTGKTAAFTLPILN 64 Query: 62 IL----EKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + + P R L+L PTRELA Q++ N Y L +L+ GG+ +Q Sbjct: 65 RLIPKANYSTSPAKHPVRMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQK 124 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 ++L RGAD++I TPGR+LDH + + + +E LV+DEADRMLDMGF+P + I S +P Sbjct: 125 QELMRGADIVIATPGRLLDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRILSNLPK 184 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +RQ+LL+SAT ++ ++ +++ FL NP I V + +STA TI+ V + ++ K AL+ Sbjct: 185 SRQSLLYSATFSENIRSLAQKFLNNPVEITVASNNSTASTIKQE-VYSVSESDKNAALVY 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L + N IIF N+K NL L +V ++HG+ Q R K L FK Sbjct: 244 IL--TSRAFNNVIIFSNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLFKSSKC 301 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDI DV V N+++P +E+Y+HRIGRTGRAG+ G A +L + E+ K Sbjct: 302 NILVATDVAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGKKGIAISLCSSEEGKS 361 Query: 357 IDAIEKLIEKKVDWLN 372 + IE L K L+ Sbjct: 362 LSEIETLTGLKFQKLS 377 >gi|205354184|ref|YP_002227985.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273965|emb|CAR38970.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629305|gb|EGE35648.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 618 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|62289973|ref|YP_221766.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str. 9-941] gi|82699901|ref|YP_414475.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308] gi|189024215|ref|YP_001934983.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus S19] gi|254689280|ref|ZP_05152534.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 6 str. 870] gi|254693764|ref|ZP_05155592.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 3 str. Tulya] gi|254697417|ref|ZP_05159245.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730315|ref|ZP_05188893.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 4 str. 292] gi|256257530|ref|ZP_05463066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 9 str. C68] gi|297248372|ref|ZP_06932090.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196] gi|62196105|gb|AAX74405.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus bv. 1 str. 9-941] gi|82616002|emb|CAJ11028.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189019787|gb|ACD72509.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus S19] gi|297175541|gb|EFH34888.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196] Length = 531 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida W619] gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619] Length = 439 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 222/370 (60%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA LGL ++ + Y PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MNFAKLGLIEPLLRTLQQLDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV +N +Y +N L+ + GG+ Q + Sbjct: 61 QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD F + + N ++ LV+DEADRMLD+GF +Q++ + +P R Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++ ++ L +P IEV+ ++ A T++ V +K L L Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNAAATTVKQWLVPV--DKKRKVDLFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q K ++F + V L L +G + IHG+ Q +R + L +FK IQ+ Sbjct: 239 LRKQ-RWKQVLVFAKTRNGVDQLVERLLGEGVNADGIHGDRPQATRQRALDSFKAREIQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQQLA 357 Query: 359 AIEKLIEKKV 368 IE LI + + Sbjct: 358 TIETLIRQTL 367 >gi|62129424|gb|AAX67127.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 651 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 30 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 90 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 384 RTMKLTIPEVELPNAEL 400 >gi|256369477|ref|YP_003106985.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti CCM 4915] gi|255999637|gb|ACU48036.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti CCM 4915] Length = 535 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|207858530|ref|YP_002245181.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206710333|emb|CAR34691.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 629 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|148560232|ref|YP_001258986.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840] gi|161619002|ref|YP_001592889.1| DEAD/DEAH box helicase domain-containing protein [Brucella canis ATCC 23365] gi|254701799|ref|ZP_05163627.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] gi|256061140|ref|ZP_05451294.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|148371489|gb|ABQ61468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis ATCC 25840] gi|161335813|gb|ABX62118.1| DEAD/DEAH box helicase domain protein [Brucella canis ATCC 23365] Length = 535 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 543 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 149/365 (40%), Positives = 231/365 (63%), Gaps = 11/365 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L LS +++ AV D G+ + TPIQ +IP ++ D+ G +QTGTGKTA+F +P Sbjct: 4 LKFNELNLSNEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADN---FEKYGKNYNLTVALLIGGIPFEAQNK 117 +LEK A+ + +++IL PTRELA QVA+ F KY K N + + GG P + Q Sbjct: 62 -VLEKTNAKNKAVQSVILCPTRELAIQVAEELKLFSKYKKGIN--IVPVYGGQPIQRQMI 118 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +GA ++I TPGR++DH R L ++ I+++DEAD MLDMGF I+ I +P Sbjct: 119 ALSKGAQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPEG 178 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+ FSATM E +++ + +P+ I+V + T +IE + + +K L + Sbjct: 179 RQTVFFSATMPKEFLSLTKKYQHSPETIKVVSEKLTVPSIEQYYFDI--KEHQKLEALTR 236 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L D K ++FCN KK V + SL+ +G+ AIHG+++Q R +++S F+ G+I+ Sbjct: 237 CLDMYDP-KLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIE 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L++A+D+AARG+D+ + VFNFDVP E+Y+HRIGRTGRAG+ GKA++ V+ +DI + Sbjct: 296 LLIATDVAARGIDVDGIDMVFNFDVPKDDEDYVHRIGRTGRAGKAGKAYSFVSGKDIYKL 355 Query: 358 DAIEK 362 I++ Sbjct: 356 RDIQR 360 >gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184] gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184] Length = 545 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 153/390 (39%), Positives = 233/390 (59%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 69 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 128 Query: 61 ------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 T ++ RA RVR P+ L+L PTRELA QV YGK+ Sbjct: 129 FAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 188 Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 189 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 248 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 249 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 308 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ D + IIF K + L L GF A Sbjct: 309 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 362 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 363 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 422 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 423 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 452 >gi|16421839|gb|AAL22152.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261248446|emb|CBG26283.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|332990138|gb|AEF09121.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 646 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|293334655|ref|NP_001168054.1| hypothetical protein LOC100381784 [Zea mays] gi|223945725|gb|ACN26946.1| unknown [Zea mays] Length = 672 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 222/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F ++ VL AG+ PTPIQ ++ P+ ++ D+ +A+TG+GKT ++LP Sbjct: 157 MTFQSTCFPSDILREVLQAGFSAPTPIQAQSWPIAMKGRDIVAVAKTGSGKTLGYLLPGF 216 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ R P L+L PTRELA Q+ D K+G++ ++ L GG P Q ++L Sbjct: 217 ILLKRLHHNSREGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLREL 276 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGADV++ TPGR+ D K+ + + LV+DEADRMLDMGF P I+ I +P RQ Sbjct: 277 ERGADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQ 336 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTA--ETIEHCFVATYAQYSKKCALLQ 236 TL+++AT E++K++ + L NP ++ + NT A +H V + + S++ L Sbjct: 337 TLMYTATWPKEVRKIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRR---LD 393 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L+SQD IIFC+ K+ L +L +Q + AIHG+ Q R +L++F+ G Sbjct: 394 QILRSQDPGSKIIIFCSTKRMCDQLARNLSRQ-YGASAIHGDKSQAERDSVLNDFRSGRC 452 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T +D K+ Sbjct: 453 PVLVATDVAARGLDIKDIRIVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSKY 512 Query: 357 IDAIEKLIE 365 + K++E Sbjct: 513 ASELVKILE 521 >gi|305667396|ref|YP_003863683.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170] gi|88709444|gb|EAR01677.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170] Length = 432 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 157/423 (37%), Positives = 245/423 (57%), Gaps = 23/423 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LG+ ++ A+ GY PTPIQ + +P++L+ D+ G AQTGTGKTA+F +P+L Sbjct: 1 MTFKNLGIIEPILKALGQEGYSSPTPIQEQAVPILLKGKDLLGCAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + R R R + L++ PTRELA Q+ ++F YGK + ++ GG+ Q + Sbjct: 61 QQIHNDRQSNDRHRKIKALVVTPTRELAIQIGESFTAYGKFTGIRNTVIFGGVKQGKQTQ 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ G D+LI TPGR+LD N+G + + +IE V+DEAD+MLDMGFI I+ I + +P Sbjct: 121 ALKNGVDILIATPGRLLDLMNQGFISLRDIEYAVLDEADQMLDMGFIHDIRKIIAKLPPK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ+L FSATM ++ +S L + +R+ + +TAE +E + + S K LL Sbjct: 181 RQSLFFSATMPKDIVALSRTILGDFERVTIKPEQATAEKVEQ--LVYFVNKSNKVKLLVH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+++ + ++F K + L + + AIHGN Q +R K L +FK G ++ Sbjct: 239 LLENRPN-SSVLVFSRTKHGANKIVKKLGQADIASAAIHGNKSQTARQKALGDFKAGELK 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+D+ D+ V NFD+PN E Y+HRIGRTGRA G A + +++ ++ Sbjct: 298 VLIATDIAARGIDVDDLALVVNFDLPNVPETYVHRIGRTGRASASGIAISFCDRDEQPYL 357 Query: 358 DAIEKLIEKKV------DWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 IEKLI+++V +++ D + LNP K + N + N RRK Sbjct: 358 RDIEKLIKQQVPRMPEHPFISDDSTEVLNPKQNKGNSGNRNRSSSQN----------RRK 407 Query: 411 KNY 413 NY Sbjct: 408 SNY 410 >gi|213585104|ref|ZP_03366930.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 327 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 147/330 (44%), Positives = 210/330 (63%), Gaps = 8/330 (2%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRM 72 A+ + GY +PTPIQ + IP VL+ D+ AQTGTGKTA F LP+L I + A+ R Sbjct: 2 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 61 Query: 73 P-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131 P R LIL PTRELAAQ+ +N Y K N+ ++ GG+ Q KL G DVL+ TPG Sbjct: 62 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 121 Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191 R+LD ++ + ++ IEILV+DEADRMLDMGFI I+ + + +P RQ LLFSAT +D++ Sbjct: 122 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 181 Query: 192 QKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250 + ++E L+NP IEV ++ +E + +H + +K LL Q++ Q + ++ Sbjct: 182 KALAEKLLRNPLEIEVARRNTASEQVTQHVH---FVDKKRKRELLSQMI-GQGNWQQVLV 237 Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310 F K +L L K G AIHGN Q +R + L++FK G I+++VA+D+AARGLD Sbjct: 238 FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLD 297 Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 I ++ HV N+++PN E+Y+HRIGRTGRA Sbjct: 298 IEELPHVVNYELPNVPEDYVHRIGRTGRAA 327 >gi|254448048|ref|ZP_05061512.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015] gi|198262474|gb|EDY86755.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015] Length = 586 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA+L L ++ + GY +P+PIQ ++IP +++ D+ G AQTGTGKTA+F LP+L Sbjct: 6 VSFAELALPAPLLKTLAHIGYEQPSPIQAESIPPLMEGRDLLGTAQTGTGKTAAFALPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 T ++ V P+ L+L PTRELA QV++ F+ Y N V + GG Q K L Sbjct: 66 TRIDTA---VAQPQVLVLAPTRELAIQVSEAFKSYAAGMNQFRVLPIYGGADIGGQIKAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH R L ++ ++ +V+DEAD ML MGFI + I S P RQ Sbjct: 123 KRGPQVIVGTPGRVMDHLRRKTLKLDQLQSVVLDEADEMLRMGFIEDVNWILSHTPEERQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM ++K+S +L NP I++ ++T + IE + + + K L ++L Sbjct: 183 IALFSATMPAPIKKLSAQYLNNPVEIKIKADTATVDRIEQSY--WLVKGTNKLDALTRIL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D I+F K V L LE +G+ AI+G++ Q+ R + + K+ I ++ Sbjct: 241 EVED-FDGVIMFARTKNMTVELADKLEARGYRSAAINGDMTQKIRERTIKQLKDEKIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV NFD+P E Y+HRIGRTGRAGR GKA VA + + A Sbjct: 300 VATDVAARGIDVARVSHVINFDIPYDTEAYVHRIGRTGRAGRDGKAILFVAPRERHLLRA 359 Query: 360 IEKLIEKKVD 369 IEK + ++ Sbjct: 360 IEKATRQTIE 369 >gi|260564054|ref|ZP_05834540.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M] gi|260154070|gb|EEW89162.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M] Length = 510 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGATASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01] gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B] gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01] gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B] Length = 643 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 147/368 (39%), Positives = 223/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+ ++ A+ G+V PTPIQ IP +L+ D G AQTGTGKTA+F LP+L Sbjct: 8 FSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ + R P+ ++L PTRELA QVA + GKN L V + GG Q + L+ Sbjct: 68 LDLNQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKS 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q + Sbjct: 125 GAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM L+K+ E FL++P ++V + T + ++ F +K + +LL++ Sbjct: 185 LFSATMPPMLKKIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLLET 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++VA Sbjct: 243 EET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + IE Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 361 Query: 362 KLIEKKVD 369 ++ + ++ Sbjct: 362 RVTKSSME 369 >gi|303249337|ref|ZP_07335567.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans JJ] gi|302489269|gb|EFL49229.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans JJ] Length = 498 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 213/368 (57%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F L P + + GY PTPIQ + IP V D+ G+AQTGTGKTA+F+LP++ Sbjct: 21 LSFDSFCLHPTICANIARIGYETPTPIQAEAIPHVADGRDIMGLAQTGTGKTAAFLLPII 80 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R R LIL PTRELA Q+ G+ L A++ GG+ Q + L Sbjct: 81 HRLMTTKPEKRGVRALILAPTRELAEQIYRAGVDLGRGTRLRAAVIYGGVGMFPQVRALR 140 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ PGR+LDH N+G + + +E LV+DEAD M DMGF+P ++ I + VP RQT Sbjct: 141 QGLDIVVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDLRRILAAVPEKRQT 200 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ L +P + + + A T+EH + ++K LL LL Sbjct: 201 LLFSATMPAAIAGLAGETLTDPVTVRIGH-LAPAATVEHAIYPVSS--AQKTPLLLHLL- 256 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ I+F K NL L + G + GN+ QR R + F+ GT Q++V Sbjct: 257 GEAAKESVIVFTRTKHRAKNLAQQLCRAGHKATCLQGNLSQRQRQIAMDGFRRGTFQVLV 316 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+D+P+ E Y HRIGRTGRA R G+A T V ED+ + AI Sbjct: 317 ATDIAARGIDVSQVAHVVNYDIPDTPEAYTHRIGRTGRAERDGQAHTFVTGEDMSMVRAI 376 Query: 361 EKLIEKKV 368 E+ ++K + Sbjct: 377 ERHMKKPL 384 >gi|127513728|ref|YP_001094925.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126639023|gb|ABO24666.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 408 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 159/406 (39%), Positives = 243/406 (59%), Gaps = 12/406 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L + A+ + + T IQ + IPLVL D+ AQTGTGKTA+F LP+L Sbjct: 1 MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60 Query: 61 TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + PR L+L PTRELA QV + + +L+ L+ GG+ EAQ + Sbjct: 61 AKLMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQ 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L G D+++ TPGR+LD RG ++ + LV DEADRMLDMGF I + +L+P Sbjct: 121 QLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT+ D++ +S +L+ PKRI V+ +S ++ +E A ++ +K ALL Sbjct: 181 RQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSE--RKFALLSH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ D + ++F +K L L +QG A HG++ Q +R ++L++F+ G I+ Sbjct: 239 LINKGDWQRV-LVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIK 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + +V N+++P A++Y+HRIGRTGRAG+ G A TL +ED + Sbjct: 298 VLVATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLL 357 Query: 358 DAIEKLIEKKV--DWLNG---DLSSLNP-PLEKIDIAQHNHARKNN 397 + IE L++K++ WL G DL+ +P P AQ A++ Sbjct: 358 EEIEALLDKRLPQQWLPGFEPDLTKADPNPRRNGKAAQKRRAKRRG 403 >gi|161486782|ref|NP_806876.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161501917|ref|NP_457662.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213052975|ref|ZP_03345853.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425440|ref|ZP_03358190.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646152|ref|ZP_03376205.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850431|ref|ZP_03381329.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289825794|ref|ZP_06544962.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 629 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|262171576|ref|ZP_06039254.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451] gi|261892652|gb|EEY38638.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451] Length = 412 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 153/373 (41%), Positives = 221/373 (59%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + V GY PT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 15 MPFSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 74 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 75 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 134 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 135 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 194 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ + +P I + ++ I + K ALL L+ Sbjct: 195 FLLFSATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 252 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 253 NEQQ-WDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYL 311 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 312 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 371 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 372 IESRLGHLIERRV 384 >gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC 49030] gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC 49030] Length = 459 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 145/365 (39%), Positives = 220/365 (60%), Gaps = 4/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ +V ++ +AG P PIQ T+P+ L D+ G A+TGTGKT F +P+L Sbjct: 6 FADLGVEAPIVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQR 65 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + E+ R + R PR L++ PTRELA QVAD+ + ++ ++ + GG FE Q + L+ Sbjct: 66 ILDEQSREQGRAPRALVVVPTRELAHQVADDLRVASRTFSPSIVTIYGGKDFEPQIRALK 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GADV++ TPGR+LD + R L ++I V DEAD MLD+GF+P ++ I + +P RQT Sbjct: 126 DGADVVVGTPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAALPAKRQT 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLL 239 +LFSATM ++ ++ ++ P I S T+ T + Y +S K L+ ++L Sbjct: 186 MLFSATMPGQVIALARRYMTQPTHIRATQASDTSTTSVNTKQYVYRAHSMDKTELVGRIL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ + IIF K+ L L+ +GF A+HG+++Q R K L F++GT ++ Sbjct: 246 RAEGRGRT-IIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGTTDVL 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAG G A TL+ ED+ Sbjct: 305 VATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGNTGIAVTLIDWEDVAKWKL 364 Query: 360 IEKLI 364 I + + Sbjct: 365 INRTL 369 >gi|227356697|ref|ZP_03841083.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906] gi|227163205|gb|EEI48136.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906] Length = 465 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 156/374 (41%), Positives = 226/374 (60%), Gaps = 8/374 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 DF LGLS ++ A+ + GY PTPIQ + I +L DV AQTGTGKTA+F LP+L Sbjct: 3 DFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILE 62 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T EK + R + + LIL PTRELAAQ+ADN + Y + + ++ GG+ Q Sbjct: 63 KLATSAEKTKGR-KPVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQMM 121 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVLI TPGR+LD ++ + ++ +E+LV+DEADRMLDMGFI I+ + + +P Sbjct: 122 KLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKK 181 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT + E+ ++ + L NP I V +S AE+++ +K LL Sbjct: 182 RQNLLFSATFSKEITGLANSLLNNPISIAVAPKNSAAESVDQYV--HLVDKKRKTELLSH 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + +IF K L L G AIHGN Q +R + L++FK+G ++ Sbjct: 240 LI-GLENWPQVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLK 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI + +V NF++P AE+Y+HRIGRTGRA GKA +LV ++ + Sbjct: 299 ALVATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLL 358 Query: 358 DAIEKLIEKKVDWL 371 IE+L+++++ L Sbjct: 359 ADIERLLKREIPRL 372 >gi|197284517|ref|YP_002150389.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320] gi|194682004|emb|CAR41470.1| putative ATP-dependent RNA helicase [Proteus mirabilis HI4320] Length = 465 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 156/374 (41%), Positives = 226/374 (60%), Gaps = 8/374 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 DF LGLS ++ A+ + GY PTPIQ + I +L DV AQTGTGKTA+F LP+L Sbjct: 3 DFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILE 62 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T EK + R + + LIL PTRELAAQ+ADN + Y + + ++ GG+ Q Sbjct: 63 KLATSAEKTKGR-KPVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQMM 121 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL G DVLI TPGR+LD ++ + ++ +E+LV+DEADRMLDMGFI I+ + + +P Sbjct: 122 KLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKK 181 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT + E+ ++ + L NP I V +S AE+++ +K LL Sbjct: 182 RQNLLFSATFSKEITGLANSLLNNPISIAVAPKNSAAESVDQYV--HLVDKKRKTELLSH 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + +IF K L L G AIHGN Q +R + L++FK+G ++ Sbjct: 240 LI-GLENWPQVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLK 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARGLDI + +V NF++P AE+Y+HRIGRTGRA GKA +LV ++ + Sbjct: 299 ALVATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLL 358 Query: 358 DAIEKLIEKKVDWL 371 IE+L+++++ L Sbjct: 359 ADIERLLKREIPRL 372 >gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805] gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805] Length = 607 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 224/371 (60%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G S ++ + + GY +P+PIQ P ++ D+ G AQTGTGKTA+F LP+L Sbjct: 59 FAGFGFSEALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE R PR L+L PTRELA QVAD+F+ Y + +L V + GG F +Q L+R Sbjct: 119 LE---GRSSKPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHTLKR 175 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR++DH +G L + LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVV 235 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +E++++S+ +LQ P I + T A+ I + Q S K L ++L++ Sbjct: 236 LFSATMPNEIRRLSKRYLQEPAEITIKTKDREAKRIRQRSITM--QNSHKIEALNRVLEA 293 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T + IIF K + + SLE G V ++G++ Q R + + ++GT+ ++VA Sbjct: 294 V-TGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVA 352 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A V + + + +E Sbjct: 353 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLE 412 Query: 362 KLIEKKVDWLN 372 + + + ++ ++ Sbjct: 413 RAVNQSIEPMD 423 >gi|237807743|ref|YP_002892183.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis DSM 9187] gi|237500004|gb|ACQ92597.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 438 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 229/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L P ++ AV + G+ +PT IQ + IP+ ++ DV A TGTGKTA+F+LP++ Sbjct: 1 MSFESLELDPVLLQAVEELGFKRPTTIQSQVIPVAMEGRDVMASAPTGTGKTAAFLLPIM 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R R LIL PTRELA Q+ + E ++ VA +IGG+ E Q L Sbjct: 61 QHMIDFPRRRPGPARALILTPTRELALQITEQAEALAAYTHMKVASIIGGVAEEKQLPAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+ D++I TPGR++ + + +IEILV+DEADRMLDMGFI + I + + +Q Sbjct: 121 EKTVDIIIATPGRLMQYIEDERFDSRDIEILVLDEADRMLDMGFIGDVDRIAAEARWRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQ 237 T+LFSAT+ L+K +E+ L++P + P S + I+ + A A++ K LL+ Sbjct: 181 TMLFSATLEGAGLKKFAEDLLKDPAELYAEPPRSERKKIQQLVYFADTAEH--KFNLLKY 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LLQ +D ++ IIF ++ + L L+ G + G ++Q R++ L+ F+ ++ Sbjct: 239 LLQQEDVTRS-IIFVKTRERLAELVSQLQANGIDCAWLRGEMEQEKRIEALNRFRSDRVK 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+A+RG+D+PDV HVFN+D+P A+ YIHRIGRTGRAG+ G A L+ D+ + Sbjct: 298 ILVATDVASRGIDLPDVSHVFNYDMPRSADTYIHRIGRTGRAGKKGCAINLIEAHDVGMM 357 Query: 358 DAIEKLIEKKV 368 + +E+ E+K+ Sbjct: 358 ERVERYAEEKM 368 >gi|301159830|emb|CBW19349.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131640|gb|ADX19070.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 629 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRVLRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|254787708|ref|YP_003075137.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901] gi|237686799|gb|ACR14063.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901] Length = 426 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 153/373 (41%), Positives = 231/373 (61%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+ L LS +V A+ D G+ +PIQ K++P L HDV G AQTGTGKTA+F++ + Sbjct: 43 FSTLDLSSQVARALADMGFEHCSPIQAKSLPYSLSGHDVLGKAQTGTGKTAAFLIAVFED 102 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + R PR L++ PTREL Q+A + GK L+V L+GG+ F Q + Sbjct: 103 LLRQPAPEERFAGEPRALVIAPTRELVMQIAKDAAAIGKYAGLSVQTLVGGMDFNKQMQA 162 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L + D+L+ TPGR+LD R ++ ++ +EILVIDEADRMLDMGFIP ++ I L P Sbjct: 163 LHGQFVDILVATPGRLLDFCERREVYLDQLEILVIDEADRMLDMGFIPQVKRIVRLAPRK 222 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT +D++ +++E+++ P +E+ + +++E F+ + +K LL Sbjct: 223 THRQTLLFSATFSDDVLRLAESWMFEPVSVEIEPETVATDSVEQ-FIYMVSG-DEKLPLL 280 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ D +KN +IF N++ L L KQG+ V + G I Q R+K L FKEG+ Sbjct: 281 CNLISMPD-VKNVMIFANRRDQCRTLYERLRKQGYKVGLLSGEIPQGKRVKTLEAFKEGS 339 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q +VA+D+A RG+ I V HV N+ +P E+Y+HRIGRTGRAG G++ + ++D Sbjct: 340 LQALVATDVAGRGIHIDGVSHVVNYTLPEEPEDYVHRIGRTGRAGNTGQSISFACEDDAF 399 Query: 356 HIDAIEKLIEKKV 368 + AIE+L+ +K+ Sbjct: 400 RLPAIEELLGRKL 412 >gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia vietnamiensis G4] gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis G4] Length = 516 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 152/390 (38%), Positives = 226/390 (57%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLSP++V A+ AGY KPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 37 FASLGLSPEIVSALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 96 Query: 61 -TILEKGRAR--------------------VRMPRTLILEPTRELAAQVADNFEKYGKNY 99 L+K +A+ V P L+L PTRELA QV YGK+ Sbjct: 97 FAQLQKSQAQQPRAPREPNQGDRRARRPQPVARPSLLVLTPTRELAMQVTTAATTYGKHL 156 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 157 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 216 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218 LDMGFI I+ I + P +RQT+LFSAT+ ++ ++ L NP+RIE+ A+ Sbjct: 217 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLNNPERIEI-----VAKIES 271 Query: 219 HCFVATYAQY----SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +A Y K LL LL+ D + IIF K + L L GF A Sbjct: 272 RANIAQTVHYVDDRDHKDRLLDHLLR-DDALDQAIIFTATKIDADQLAGRLADAGFESAA 330 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 331 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 390 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 391 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 420 >gi|288926741|ref|ZP_06420652.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17] gi|288336471|gb|EFC74846.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17] Length = 579 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 162/439 (36%), Positives = 262/439 (59%), Gaps = 19/439 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFDELDLNDNVLDALYDMRFDSCTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116 + L+ G +I+ PTRELA Q+ + +G N +VA+ G G ++ + Sbjct: 61 SKLDDGGYPKDAINCVIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L GADV+I TPGR++ H + G + M+ + V+DEADRMLDMGF I I L+P Sbjct: 121 KSLRLGADVVIATPGRLISHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPN 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 T QT++FSATM +++++++ L+NP I++ S AE I+ Y ++K +++ Sbjct: 181 TCQTIMFSATMPAKIEELAKTLLKNPVEIKLAV-SKPAEKIKQEAYVCYE--TQKLGIIK 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + ++ D +K IIFC K V + +L+++ + +H +++Q R I+ FK G + Sbjct: 238 DIFKAGD-LKRVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R G+A TLV+++DI H Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGRAITLVSEDDIYH 356 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQKSTGFDRRKKNYSS 415 IEK +EK+V+ + PL D+ + +AR++ P ++T RR+K+ Sbjct: 357 FQQIEKFLEKEVEKI---------PL-PADLGEAPEYARQSRPSKGRTTAKSRRRKDRDQ 406 Query: 416 QKSHIPLKESEKISKLQQD 434 Q + ++ +QD Sbjct: 407 QAHRHKPNNQRRPARPEQD 425 >gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16] gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16] Length = 647 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 224/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ IP +L D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ G+ R P+ ++L PTRELA QVA + GKN L V + GG Q + L Sbjct: 66 NKLDLGQ---RKPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+ + E FL++P+ I+V + T + +E F +K + +LL Sbjct: 183 RVLFSATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV ++ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|78060377|ref|YP_366952.1| DEAD/DEAH box helicase [Burkholderia sp. 383] gi|77964927|gb|ABB06308.1| DEAD/DEAH box helicase [Burkholderia sp. 383] Length = 481 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 152/368 (41%), Positives = 225/368 (61%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + D Y PTP+Q K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F YGK +L GG+ Q K Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++ ++ L+ P I V+ P++TA I+ +V T + +K + Sbjct: 181 QTLLFSATFSDDIRAMAATILRGPVNISVSPPNATASKIKQ-WVVTVDKRNKPDLFMH-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +++ ++ ++F + V L L++ G++V IHG+ Q +R++ L FK G +Q+ Sbjct: 238 LVAENKWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEK 366 AIE LI++ Sbjct: 358 AIEALIKQ 365 >gi|254704340|ref|ZP_05166168.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] gi|260566411|ref|ZP_05836881.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40] gi|260155929|gb|EEW91009.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40] Length = 503 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|157960630|ref|YP_001500664.1| ATP-dependent RNA helicase SrmB [Shewanella pealeana ATCC 700345] gi|157845630|gb|ABV86129.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 411 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 229/373 (61%), Gaps = 14/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L P ++ ++ G+ KPT IQ +TIP+ +++ D+ A TGTGKTASF+LP L Sbjct: 4 MQFEDLQLDPCLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPAL 63 Query: 61 TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L GRARV LIL PTRELA+Q+ L ++ GG+P+ Sbjct: 64 QHLIDFPRRYGGRARV-----LILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGP 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L++ D+L+ TPGR++++ ++G +E+L+IDEADRMLDMGF +++I Sbjct: 119 QEEALQKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVESIAIES 178 Query: 175 PFTRQTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +QT+LFSAT+ ++ + S N L NP ++E P S I H ++ + K A Sbjct: 179 VGRKQTMLFSATLEGSDVGRFSHNLLTNPVKLEAEAPRSEKAKI-HQWIHLADDKAHKFA 237 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL+ Q+ ++ I+F +++V +L L+K+G + + G+++Q++R + L F + Sbjct: 238 LLCALLK-QEEVQRTIVFVKTRESVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTK 296 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G + +++A+D+AARG+DI D+ HV NFD+P A+ Y+HRIGRTGRAG G A +LV D Sbjct: 297 GEVNILLATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHD 356 Query: 354 IKHIDAIEKLIEK 366 I+ + IE+ IE+ Sbjct: 357 IRVVGKIERYIEQ 369 >gi|304314413|ref|YP_003849560.1| ATP-dependent RNA helicase [Methanothermobacter marburgensis str. Marburg] gi|302587872|gb|ADL58247.1| predicted ATP-dependent RNA helicase [Methanothermobacter marburgensis str. Marburg] Length = 425 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 226/368 (61%), Gaps = 9/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F++ +S ++ A+ D G+ TPIQ T+P+ L DV G AQTGTGKTA+F +P+L Sbjct: 4 LKFSEFDISGEINRALDDMGFEGTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFTIPLL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE R +P+ L++ PTREL QV D + GK N+ V + GG Q +L Sbjct: 64 ENLEPER----VPQALVICPTRELCLQVTDEIRRIGKYLNVRVLAVYGGQGIGGQIAELR 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++DH RG + + I +V+DEAD ML+MGFI I+ I S VP RQT Sbjct: 120 RGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT++ + +++E ++++P+ + V S I+ + T + K LL +L Sbjct: 180 MLFSATISKPVLRIAERYMRSPQILRVEKKHSPR--IDEFYFKTREE--DKVELLDWILT 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S D ++ G+IFCN K+ V L L + G+SV IHG++ Q R +++ F++G L++ Sbjct: 236 SND-IRMGLIFCNTKRRVQRLRKQLSRMGYSVDEIHGDLSQSKRERVMERFRKGRFNLLI 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+ +PDV V N+D+P E Y+HRIGRTGRAG GK+FTLV ++ + I Sbjct: 295 ATDVAARGIHVPDVEVVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGREVHRLRRI 354 Query: 361 EKLIEKKV 368 + K++ Sbjct: 355 QSFTGKRI 362 >gi|261314221|ref|ZP_05953418.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261303247|gb|EEY06744.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] Length = 462 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 76 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 313 ATDIAARGIDVPGSSHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397 >gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus DSM 15470] gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus DSM 15470] Length = 510 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 226/364 (62%), Gaps = 16/364 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL P+++ A+ D G+ +PTPIQ +IP ++ D+ G AQTGTGKTA+F +P I Sbjct: 5 FKELGLVPEIMKAIEDMGFEEPTPIQKVSIPAAMEGKDLIGQAQTGTGKTAAFGIP---I 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEK + P+ ++L PTRELA Q A+ + + + + GG E Q + L + Sbjct: 62 LEKIDTTEKGPQAIVLSPTRELAIQSAEEMNRLAQYLPIHALPIYGGQDIERQFRALRKK 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++++ TPGR++DH RG + +++++ILV+DE D M+DMGFI I+ I + +P RQT+ Sbjct: 122 PNIIVATPGRLMDHMKRGTIDLSHVQILVLDEGDEMVDMGFIDDIRTILAGMPEERQTMF 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQLLQ 240 FSATM +++++E+FL++P +++ + T + +E ++ ++ C LL Sbjct: 182 FSATMPAPIRELAESFLRDPVLVKIKAATVTIDLVEQEYIELPDMQKFDCLCRLLD---- 237 Query: 241 SQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 M+N I+F K+ + +L+K+G+ +HG++ Q+ R ++ FKEGTI Sbjct: 238 ----MENPELAIVFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGTID 293 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI V HV+NFD+P +E Y+HR+GRTGRAG+ G A T V +I + Sbjct: 294 ILVATDVAARGLDISGVTHVYNFDMPQDSETYVHRVGRTGRAGQTGLAMTFVVSREIGQL 353 Query: 358 DAIE 361 IE Sbjct: 354 HDIE 357 >gi|237815476|ref|ZP_04594474.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A] gi|237790313|gb|EEP64523.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A] Length = 545 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 340 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 341 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 400 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 458 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 459 AVERVTRSKLSIKDAPVKLAPAPVAK 484 >gi|258627528|ref|ZP_05722305.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603] gi|258580110|gb|EEW05082.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603] Length = 398 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 153/373 (41%), Positives = 221/373 (59%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + V GY PT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 1 MPFSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK+ L + GG+ +AQ ++L Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ + +P I + ++ I + K ALL L+ Sbjct: 181 FLLFSATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 NEQQ-WDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 358 IESRLGHLIERRV 370 >gi|189425337|ref|YP_001952514.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ] gi|189421596|gb|ACD95994.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ] Length = 452 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 162/414 (39%), Positives = 233/414 (56%), Gaps = 25/414 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DL L +V+ + AG+ TPIQ +T+PL L DV G AQTGTGKTA+F++ + Sbjct: 1 MKFSDLSLPAQVLQGIHQAGFNACTPIQAQTLPLSLSGKDVAGQAQTGTGKTAAFLITLF 60 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 T L + PR LIL PTREL Q+ + + G + + + GGI + Q Sbjct: 61 TKLLASPSAAADGSLPRPRALILAPTRELVVQIEKDAQLLGSHCGFNIQAIYGGIDYMKQ 120 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLV 174 L+ GAD++I TPGR++D+ + + +IE+LVIDEADRM DMGFIP ++ I L Sbjct: 121 KNALKDGADIVIGTPGRLIDYLKQKVYSLKHIEMLVIDEADRMFDMGFIPDLRYILRRLP 180 Query: 175 PF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 PF RQ L+FSAT+ + ++S F+ P+++ V TAE +E Y +K+ Sbjct: 181 PFDQRQNLMFSATLNQRVMELSYEFMNVPQKVSVTPEKMTAERVEQVL---YHVSNKEKF 237 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L L ++ M ++F N K+ L L F I G++DQR RM IL FK Sbjct: 238 PLLLGLLRREGMARTMLFVNTKREAERLQDRLNANEFPCRVISGDVDQRKRMNILEQFKR 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G + +++A+D+A+RGL I V HV N+D+P AE+Y+HRIGRT RAG GKA +L ++ Sbjct: 298 GELAILIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDG 357 Query: 354 IKHIDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKST 404 +I+AIE+ I K V+W DL H++ R K+ P P ST Sbjct: 358 AFYIEAIEEYIRHKVAVEWAEDDLFI------------HDYKRPKHRPAPVAST 399 >gi|139473559|ref|YP_001128275.1| DEAD box helicase family protein [Streptococcus pyogenes str. Manfredo] gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str. Manfredo] Length = 539 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 228/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + + L++ PTRELA Q + ++G+ + V + GG E Q K L+ Sbjct: 61 N---KIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+LD R ++++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHIVVGTPGRLLDLIKRKAVILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ +++ T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V + L+ +GF IHG++DQ R++++ +FK I ++V Sbjct: 236 VNQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 ENLTKKQMKPL 365 >gi|225432126|ref|XP_002274485.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1864 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 225/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G P+++ + AG+ PTPIQ +T P+ LQ D+ IA+TG+GKT +++P Sbjct: 498 MTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF 557 Query: 61 TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + R V+ P ++L PTRELA Q+ D K+G++ ++ A L GG AQ K+L Sbjct: 558 ILLRRRRNNVQNGPTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKEL 617 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RGADV++ TPGR+ D K+ + I +LV+DEADRMLDMGF P I+ I + +P RQ Sbjct: 618 DRGADVVVATPGRLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQ 677 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQ 236 TL+++AT E++K++ + L NP ++ + S E + + Y + +K L+ Sbjct: 678 TLMYTATWPKEVRKIAGDLLVNPVQVNI---GSVDELAANKAITQYVEVVSPPEKQRRLE 734 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L+SQ+ IIFC+ KK L S+ + F IHG+ Q R +L+ F+ G Sbjct: 735 QILRSQERGSKVIIFCSTKKLCDQLARSIGRN-FGAAVIHGDKSQVERDWVLNQFRSGKS 793 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G ++T +++D K+ Sbjct: 794 PILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDCKY 853 Query: 357 IDAIEKLIE 365 + K++E Sbjct: 854 AADLIKVLE 862 >gi|261210866|ref|ZP_05925156.1| ATP-dependent RNA helicase [Vibrio sp. RC341] gi|260839841|gb|EEX66441.1| ATP-dependent RNA helicase [Vibrio sp. RC341] Length = 435 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 154/373 (41%), Positives = 220/373 (58%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + V GY PT IQ + IP++LQ DV AQTGTGKTASFVLP+L Sbjct: 38 MPFSQLGLSDVLTHTVAQLGYQTPTQIQTQAIPVILQGRDVIAAAQTGTGKTASFVLPIL 97 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YGK L + GG+ +AQ ++L Sbjct: 98 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKATGLKGLAVFGGVDEQAQKQRL 157 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 158 IEGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPNEVQ 217 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ + +P I + ++ I + K ALL L+ Sbjct: 218 FLLFSATLSRKVRELAKTAVNDPYEITIAANQASKSNISQWLITV--DKDTKSALLSHLI 275 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 276 TEQQ-WDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKAGKIKYL 334 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 335 VATGVAARGIDIEQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 394 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 395 IESRLGHLIERRV 407 >gi|25511900|pir||AB0901 ATP-dependent RNA helicase (dead-box protein) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504348|emb|CAD07800.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica subsp. enterica serovar Typhi] gi|29139168|gb|AAO70736.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 646 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|170766108|ref|ZP_02900919.1| cold-shock DEAD box protein A [Escherichia albertii TW07627] gi|170125254|gb|EDS94185.1| cold-shock DEAD box protein A [Escherichia albertii TW07627] Length = 627 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 233/379 (61%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDLSS 377 KL +V+ N +L S Sbjct: 362 RTMKLTIPEVELPNAELLS 380 >gi|301047996|ref|ZP_07195038.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1] gi|300300139|gb|EFJ56524.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1] Length = 646 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPAGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis RH4] gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis RH4] Length = 577 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 229/368 (62%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGL+ ++ A+ +GY PTPIQ K IP L D+ AQTG+GKTA+FVLP+L Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + + LIL PTRELA QV D+ +YG N+ L+GG P+ Q + L++ Sbjct: 80 MSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK 139 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH G++ ++ +++L++DEADRMLDMGF I+ I P TRQT+ Sbjct: 140 GVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTV 199 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240 + SAT + K++E+F NP+++ + S+ E++ +C ++ K +L Q+L Sbjct: 200 MSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYC-----DDFNHKNNILLQVLN 254 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +K +IF K + L L + GF +HG++ Q R +I+S+ K G L+V Sbjct: 255 NP-KIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDLLV 313 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV N+D+P + E+Y+HRIGR GRAGR G A L + +D + ++ I Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373 Query: 361 EKLIEKKV 368 + +++++ Sbjct: 374 NRYLKRQM 381 >gi|239831927|ref|ZP_04680256.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824194|gb|EEQ95762.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 470 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 149/370 (40%), Positives = 228/370 (61%), Gaps = 8/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ++ IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 24 FAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQK 83 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 84 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIA 143 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 144 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSERQT 203 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++ + L++P R+EV +TA I + + ++ LL LL Sbjct: 204 ALFSATMPKEIASLAGSLLRDPVRVEVAPQGTTAAEITQVVHPVHTKEKRR--LLSALLG 261 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + M++ I+F K + LE+ G+ V AIHGN Q +R + L+ F++G++++++ Sbjct: 262 DK-AMRSVIVFTRTKHGADAVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILI 320 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 321 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPAAEESK-LR 379 Query: 359 AIEKLIEKKV 368 A+E++ K+ Sbjct: 380 AVERVTRSKL 389 >gi|153009469|ref|YP_001370684.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561357|gb|ABS14855.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC 49188] Length = 464 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 149/370 (40%), Positives = 227/370 (61%), Gaps = 8/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ++ IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 17 FAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQK 76 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 77 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIA 136 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 137 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSDRQT 196 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++ + L +P R+EV +TA I + + ++ LL LL Sbjct: 197 ALFSATMPKEIASLAGSLLHDPVRVEVAPQGTTAAEITQVVHPVHTKEKRR--LLSALLG 254 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + M++ I+F K + LE+ G+ V AIHGN Q +R + L+ F++G++++++ Sbjct: 255 DK-AMRSVIVFTRTKHGADAVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILI 313 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 314 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPAAEESK-LR 372 Query: 359 AIEKLIEKKV 368 A+E++ K+ Sbjct: 373 AVERVTRNKL 382 >gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996] gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996] Length = 457 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 159/430 (36%), Positives = 239/430 (55%), Gaps = 27/430 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ + +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ +NP+ +EV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI---PQKSTGF-DRRKKNYSS 415 IEK I++K L ++ + RK P P+ G+ DR+ + Sbjct: 361 IEKYIDRK--------------LNEVTVEGMEPTRKRKPAGGKPKGKDGWGDRKSGGWRG 406 Query: 416 QKSHIPLKES 425 K P KE Sbjct: 407 DKK--PGKEG 414 >gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383] gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383] Length = 516 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 152/391 (38%), Positives = 233/391 (59%), Gaps = 34/391 (8%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 37 NFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96 Query: 61 -------TILEKGRA---------RVRMPRT------LILEPTRELAAQVADNFEKYGKN 98 T ++ RA R R P+ L+L PTRELA QV YGK+ Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAATTYGKH 156 Query: 99 Y-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADR Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADR 216 Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSST 213 MLDMGFI I+ I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ Sbjct: 217 MLDMGFIDDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANI 276 Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273 A+T+ + K LL LL+ D + IIF K + L L GF Sbjct: 277 AQTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESA 330 Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333 A+HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRI Sbjct: 331 ALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRI 390 Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 GRTGRAGR G A +LV + + IE+ + Sbjct: 391 GRTGRAGRSGTAVSLVHHAEQGALKRIERFV 421 >gi|330829948|ref|YP_004392900.1| putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565] gi|328805084|gb|AEB50283.1| Putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565] Length = 462 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 170/444 (38%), Positives = 266/444 (59%), Gaps = 20/444 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLSP ++ AV + GY +PTPIQ + IP +L DV G AQTGTGKTA F LPML Sbjct: 1 MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L GR R R R L+L PTRELAAQV ++ KY + + GG+ + Sbjct: 61 QRLLANHGRGR-RQVRALVLTPTRELAAQVGESIIKYAHHLPFKTLIAYGGVSIKPNLDA 119 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++ G D+L+ TPGR+LD +G L ++ +E+LV+DEADRMLDMGFI I+ I +P R Sbjct: 120 IKLGVDILVATPGRLLDLLTQGALTLSQLEVLVLDEADRMLDMGFIVDIRRIMKALPAER 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +++++ ++++ L +P IEV+ ++ AE + + ++ LL + Sbjct: 180 QTLLFSATFSNDIKALADDLLNDPTLIEVDPSNTAAEQVTQRIIQV--DRERRRELLSHM 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++F K+ L ++K G + AIHG+ Q +R + L++F+ G +++ Sbjct: 238 I-GRGNWQRVLVFVRTKQIADRLAQQMQKDGLNTVAIHGDKSQGARNRALADFRSGEVRV 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + +V NF++P AE+YIHRIGRTGRAGR G+A +LV+++++ + Sbjct: 297 LVATDIAARGLDIDQLPYVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLK 356 Query: 359 AIEKLIEK--KVDWLNGDLSSLNPPLEKIDIAQ----------HNHARKNNPIPQKSTGF 406 AIE LI + V+ L G S P + + ++ H +A+ +N + + G Sbjct: 357 AIEALIGQSLSVEILEGYEPSGKPSRQTLPGSKPVQNPPRARGHANAKSSNAKGKPAAGK 416 Query: 407 DRRKKNYSSQKSHIPLKESEKISK 430 + K + S K P ++ E + + Sbjct: 417 GKAKGDAS--KKTAPARKREVVGE 438 >gi|198242882|ref|YP_002217254.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937398|gb|ACH74731.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326625031|gb|EGE31376.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 629 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 231/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + ++ A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILTA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|283788210|ref|YP_003368075.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter rodentium ICC168] gi|282951664|emb|CBG91364.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter rodentium ICC168] Length = 626 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL V+ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPVLEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1] gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1] Length = 429 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 159/388 (40%), Positives = 232/388 (59%), Gaps = 15/388 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LGLS V+ ++ + G+ PT IQ K+IPL+L DV G A TG+GKT SF +L Sbjct: 30 NFKKLGLSNAVLKSIDEHGFESPTAIQEKSIPLILAGEDVIGGAATGSGKTLSFASGILQ 89 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 EKG+ + LIL PTRELA QVA++ K+ K L +A + GG+ Q K+L + Sbjct: 90 NSEKGKG----IQALILTPTRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQIKEL-K 144 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 A+V++ TPGR+LDH +R + +NN++ LV+DEAD M DMGF ++ I P RQTL Sbjct: 145 NAEVVVGTPGRLLDHISRNTIKLNNVKTLVLDEADHMFDMGFKVDVEKIIKECPQNRQTL 204 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+T ++ ++S +++NP R+ + S + + V Q K +LL LLQ+ Sbjct: 205 LFSATITKDIVRLSRKYMENPVRV---STESYIDPQKLNQVVYKVQDDMKLSLLVYLLQN 261 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + G++FCN K+N + +L K + AIHG + Q R +IL F G I ++V Sbjct: 262 EKS-NLGMVFCNTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRILEKFHSGNIGVLVC 320 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A RGLDI V HV+N+D+P ++ YIHRIGRT RAG GKA +++K D H + + Sbjct: 321 TDVAGRGLDIQGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKND--HANFMS 378 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389 L + VD L P L+KI I + Sbjct: 379 VLKDNDVDIKEQAL----PALKKIVIER 402 >gi|332345119|gb|AEE58453.1| cold-shock DEAD box protein A [Escherichia coli UMNK88] Length = 629 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 233/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ +F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRHFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|332879243|ref|ZP_08446940.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682663|gb|EGJ55563.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 448 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 159/435 (36%), Positives = 252/435 (57%), Gaps = 26/435 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF DL LS +V+ A+ D + + TPIQ IP++L+ D+ G+AQTGTGKTA+F+LP+L Sbjct: 1 MDFYDLDLSDQVLDALDDMNFTECTPIQEHAIPVILEGRDMIGVAQTGTGKTAAFLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 + L G + +I+ PTRELA Q+ E + N++ + GG I +E + + Sbjct: 61 SKLSDGGYPEKAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQEKR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + V+DEADRMLDMGF I I +P Sbjct: 121 GLAMGADVIIATPGRLISHLSLGNVDLSKVSFFVLDEADRMLDMGFSDDIMQIVKYLPQE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q ++ L++P +++ + ++ +V AQ K +L+++ Sbjct: 181 RQTIMFSATMPRKIQDLARTILRDPVEVKLAVSKPADKIVQSAYVCYEAQ---KVSLVKK 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + + IIF + K V ++ +L + GF V A+H +++Q+ R +++ FK I Sbjct: 238 LFAERPPHRV-IIFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQID 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V NFDVP+ AE+Y+HRIGRT RA G+A TLV+++D + Sbjct: 297 VLVATDIVARGIDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRF 356 Query: 358 DAIEKLIEKKVDWLN-----GDLSSLNPPL--EKIDIAQHNHARKNNPIPQKSTGFDRRK 410 +IE +E +++ G+ + P EK + N +N G+ RR Sbjct: 357 ASIEHFLETEIEKRPLPEGLGEGPAYRPKEGGEKRYGGRRNQGHRN--------GYKRRN 408 Query: 411 KNYS----SQKSHIP 421 KN S SQK P Sbjct: 409 KNQSKEGQSQKKARP 423 >gi|261755014|ref|ZP_05998723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] gi|261744767|gb|EEY32693.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] Length = 517 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 340 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 341 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 400 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 458 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 459 AVERVTRSKLSIKDAPVKLAPAPVAK 484 >gi|330820807|ref|YP_004349669.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3] gi|327372802|gb|AEA64157.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3] Length = 459 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 224/370 (60%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + + Y PTP+Q K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIAPLLRNLQELNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA Q+ +F YGK +L GG+ Q K Sbjct: 61 QRLVQHGPAVASNRARVLVLVPTRELAEQLLQSFVDYGKGLDLRFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPERR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ N L+ P I V+ P++TA I +V T + +K + Sbjct: 181 QTLLFSATFSDEIRAMAANILRKPVDISVSAPNATASKIRQ-WVVTVDKRNKPELFMH-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +++ ++ ++F + V L LE+ G++V IHG+ Q +R++ L FK IQ+ Sbjct: 238 LVARNKWEHALVFAKTRNGVDYLAAVLEQAGYAVDTIHGDKPQPARLRALERFKAREIQM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEKKV 368 AIE LI + + Sbjct: 358 AIEALIRQTL 367 >gi|191168055|ref|ZP_03029855.1| cold-shock DEAD box protein A [Escherichia coli B7A] gi|218555734|ref|YP_002388647.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI1] gi|260857291|ref|YP_003231182.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str. 11368] gi|260869914|ref|YP_003236316.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str. 11128] gi|293449499|ref|ZP_06663920.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088] gi|190901924|gb|EDV61673.1| cold-shock DEAD box protein A [Escherichia coli B7A] gi|218362502|emb|CAR00126.1| ATP-dependent RNA helicase [Escherichia coli IAI1] gi|257755940|dbj|BAI27442.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str. 11368] gi|257766270|dbj|BAI37765.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str. 11128] gi|291322589|gb|EFE62018.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088] gi|323154376|gb|EFZ40577.1| cold-shock DEAD box protein A [Escherichia coli EPECa14] gi|323178875|gb|EFZ64451.1| cold-shock DEAD box protein A [Escherichia coli 1180] gi|323183117|gb|EFZ68515.1| cold-shock DEAD box protein A [Escherichia coli 1357] Length = 629 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|325522216|gb|EGD00856.1| DEAD/DEAH box helicase [Burkholderia sp. TJI49] Length = 480 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 152/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + D Y PTP+Q K IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIGPLLRNLQDLNYQTPTPVQAKAIPAVLGGQDVMAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++ G A R L+L PTRELA QV +F YGK +L GG+ Q K Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT TD+++ ++ N L+ P I V+ P++TA I +V T + +K + Sbjct: 181 QTLLFSATFTDDIRAMAANILRAPVNISVSPPNATASKIRQ-WVVTVDKRNKPELFMH-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +++ + ++F + V L L++ G++V IHG+ Q +R++ L FK+ + + Sbjct: 238 LVAENNWDHALVFVKTRSGVDYLAARLDEAGYAVDTIHGDKPQPARLRALERFKQREVSM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 358 AIETLIRQ 365 >gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus epidermidis VCU121] Length = 509 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 227/386 (58%), Gaps = 19/386 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F +LG+S K V + G+ +PTPIQ +IP L+ HD+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIE 62 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + E+G ++LIL PTRELA QVA+ + + K N+ V + GG+P E Q K L Sbjct: 63 KVVGEQG------VQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKAL 116 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178 ++G +++ TPGR++DH NR L N+I L++DEAD M++MGFI ++ I +P R Sbjct: 117 KKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQR 176 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATM +Q + + F++ PK I+ + I+ + T + +K Sbjct: 177 QTMLFSATMPKAIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNF 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + I+F K+ V L +L +G+ +HG+I Q R+++L FK I + Sbjct: 235 LDVHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 IE D N +++L PP K Sbjct: 354 QIE-------DANNRRMTALRPPHRK 372 >gi|320175526|gb|EFW50622.1| Cold-shock DEAD-box protein A [Shigella dysenteriae CDC 74-1112] Length = 626 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 453 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 222/370 (60%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYENPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ + +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ +NP+ +EV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKVD 369 IEK I++K++ Sbjct: 361 IEKYIDRKLN 370 >gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 474 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 228/371 (61%), Gaps = 15/371 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL+ V+ A+ + G+ + TPIQ + IP V+ D+ G AQTGTGKTA+F +P + Sbjct: 4 FNDLGLNDGVIKAISEMGFEETTPIQRQAIPQVMNGQDIIGQAQTGTGKTAAFGIPYI-- 61 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 R++ P + L++ PTRELA QVA+ + G+ +T + GG Q K Sbjct: 62 -----ERIQDPNNKEIKGLVVTPTRELAIQVAEEINRLGQYNGITALPIYGGQSIGHQIK 116 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++ +++ TPGR++DH NR + +NN+ ++ +DEAD ML+MGFI I+ I P Sbjct: 117 ALKKRPQIIVGTPGRLIDHLNRKTIKLNNVNMVTLDEADEMLNMGFIEDIKTILQKTPSH 176 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTL+FSATM ++ ++E F+ +P+ I T T +IE +V + K + + Sbjct: 177 KQTLMFSATMPGPIKSLAEQFMNDPEIIRTKTKEITVPSIEQQYVE--VKEGDKFDVFCR 234 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ SQ K I+F K+ V L +L+K+G+ IHG++ Q R ++ NF+ G + Sbjct: 235 LVDSQSPEK-AIVFGRTKRRVDELYQALKKRGYFAEGIHGDMPQTKRDHVIKNFRTGATE 293 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+VA+D+A+RGLD+ + H++NFD+P A++Y+HRIGRTGRAG+ G A TLV + H+ Sbjct: 294 LLVATDVASRGLDVTGISHIYNFDIPQDADSYVHRIGRTGRAGQSGAAVTLVTPREKGHL 353 Query: 358 DAIEKLIEKKV 368 + IE+ I++++ Sbjct: 354 NLIEQSIKRQI 364 >gi|300938072|ref|ZP_07152850.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1] gi|300456932|gb|EFK20425.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1] Length = 646 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|218701933|ref|YP_002409562.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI39] gi|218371919|emb|CAR19775.1| ATP-dependent RNA helicase [Escherichia coli IAI39] Length = 629 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185] gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185] Length = 537 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 155/413 (37%), Positives = 235/413 (56%), Gaps = 23/413 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+ P +V A+ + G V P PIQ T+P+ L HD+ G A+TGTGKT F +P+L+ Sbjct: 34 FADFGIHPDIVAALEEKGIVHPFPIQAMTLPVALSGHDIIGQARTGTGKTLGFGVPLLSR 93 Query: 63 L----EKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + E +A V P + +++ PTRELA QVA + E K + +A + GG FE Sbjct: 94 VTAPGETSKAAVPAPEGKPQAMVVVPTRELAVQVASDLEAAAKKRGIRIAQIYGGRAFEP 153 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q ++LE+G +V++ TPGRI+D RG L + + LV+DEAD MLD+GF+P ++ I ++ Sbjct: 154 QVERLEKGVEVIVGTPGRIIDLATRGHLDLAYVGCLVLDEADEMLDLGFLPDVEKILAMT 213 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIE-VNTPSSTAETIEHCFVATY-AQYSKKC 232 P RQT+LFSATM + ++ ++ P I + +S AET + Y A K Sbjct: 214 PGGRQTMLFSATMPGAVVTLARRYMTQPTHIRAMQDDASEAETASNIEQFVYRAHAMDKV 273 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 +L ++LQ++D IIF K+ + L +GF+ +HG++ Q +R + L F+ Sbjct: 274 EMLARILQAKDRGLT-IIFSRTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAFR 332 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G + ++VA+D+AARG+D+ DV HV N+ P + Y+HRIGRTGRAG+ G A TLV + Sbjct: 333 SGKVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYVHRIGRTGRAGKTGIAVTLVDWD 392 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 D+ LI K +D L P + + H ++ IP +TG Sbjct: 393 DLHRW----ALINKALD--------LGIPEPEETYSSSEHLFEDLEIPANATG 433 >gi|12517770|gb|AAG58298.1|AE005544_12 inducible ATP-independent RNA helicase [Escherichia coli O157:H7 str. EDL933] gi|13363516|dbj|BAB37466.1| inducible ATP-independent RNA helicase [Escherichia coli O157:H7 str. Sakai] gi|209758398|gb|ACI77511.1| inducible ATP-independent RNA helicase [Escherichia coli] gi|209758400|gb|ACI77512.1| inducible ATP-independent RNA helicase [Escherichia coli] gi|209758402|gb|ACI77513.1| inducible ATP-independent RNA helicase [Escherichia coli] gi|209758406|gb|ACI77515.1| inducible ATP-independent RNA helicase [Escherichia coli] Length = 646 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|161506153|ref|YP_001573265.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867500|gb|ABX24123.1| hypothetical protein SARI_04344 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 649 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|294852360|ref|ZP_06793033.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026] gi|294820949|gb|EFG37948.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026] Length = 488 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGRDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3] gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3] Length = 579 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 228/368 (61%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L ++ V + GY P+PIQ + IP +L DV G+AQTGTGKTA+F LP+L Sbjct: 13 FNELNLPEALLKVVSEMGYETPSPIQAQCIPHLLNGKDVLGLAQTGTGKTAAFALPLLAN 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ F+ Y ++ V + GG + Q +L R Sbjct: 73 IDLS---LKAPQVLVLAPTRELAIQVAEAFQTYSRHLAGFHVMPIYGGQSYNIQFGQLRR 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGRI+DH R L ++N+ LV+DEAD ML MGFI ++ I +P QT Sbjct: 130 GPQVVVGTPGRIMDHLKRKTLDLSNLTTLVLDEADEMLRMGFIDDVETIMKDMPAKHQTA 189 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM D+++++++ ++ +P +++ +ST E IE C++ + K L ++L+ Sbjct: 190 LFSATMPDQIKRITKRYMNDPIEVKIKAKTSTVENIEQKCWIV---RGVNKLDALTRMLE 246 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ IIF K V L LE +G+ A++G+++Q++R + ++ K G + ++V Sbjct: 247 TEE-FDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQTRERTIARLKSGGLDILV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V N+D+P E+Y+HRIGRTGRAGR GKA A + + + AI Sbjct: 306 ATDVAARGLDVERISLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPRERRLLKAI 365 Query: 361 EKLIEKKV 368 E+ +++ Sbjct: 366 ERATRQEI 373 >gi|301154834|emb|CBW14297.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1] Length = 616 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 232/371 (62%), Gaps = 13/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L+ DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPILAK 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++ + P+ L++ PTRELA QVAD +F KY K N+ L GG ++ Q + L Sbjct: 67 IDPA---AKHPQLLVMAPTRELAIQVADACEHFMKYAKGINIVT--LYGGQRYDIQLRAL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++GA V++ TPGRILDH R L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 122 KQGAQVVVGTPGRILDHIRRNTLDLSELKAIVLDEADEMLRMGFIDDVETVMAELPEEHQ 181 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238 T LFSATM + ++++++ F+ NP+ +++ + A IE C+ Y Q +K L + Sbjct: 182 TALFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCW---YVQGFRKNDALLRF 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ + Sbjct: 239 LEVED-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 298 VVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLR 357 Query: 359 AIEKLIEKKVD 369 IE L++K ++ Sbjct: 358 NIEHLMKKPIN 368 >gi|161950038|ref|YP_404825.2| ATP-dependent RNA helicase DeaD [Shigella dysenteriae Sd197] gi|309785489|ref|ZP_07680120.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617] gi|308926609|gb|EFP72085.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617] Length = 629 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GQQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066] gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066] Length = 683 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 231/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F L LSP V+ A+ D G+ PTPIQ + IP+++ D+ G AQTGTGKTA+F LP+L Sbjct: 53 ISFDSLQLSPLVLQAIKDLGFESPTPIQERAIPVMMSGDDMIGQAQTGTGKTAAFALPIL 112 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + LE + L+LEPTRELA QVA++F+ + ++ + V + GG ++ Q + + Sbjct: 113 SKLEPENKNIF---ALVLEPTRELALQVAESFQAFARHIEDFHVVPIYGGASYDNQIRSI 169 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA V++ TPGR++D RGK+ ++++ +VIDEAD ML MGFI + I + P R Sbjct: 170 RHGAQVVVATPGRLIDLIERGKIDLSSVSYMVIDEADEMLRMGFIDDVDWILNHTPSERH 229 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ + L P + + + ++TA T+ + + K + ++L Sbjct: 230 TALFSATMPEAIRRIARDHLNAPVEVRIESKTTTATTVHQRYWVVSGVH--KIDAMTRIL 287 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++F K + ++ + L +G + A+HG+I QR R KI+ K G++ ++ Sbjct: 288 EVE-PYDAVLVFVRTKTDAEDVANKLMARGMACAALHGDIPQRQREKIIERLKNGSLDII 346 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + HVFN+D+P AE+Y+HRIGRTGRAGR G+A V+ + + + Sbjct: 347 IATDVAARGLDVDRITHVFNYDIPYDAESYVHRIGRTGRAGRQGEAILFVSPRERRALRQ 406 Query: 360 IEKLIEKKVD 369 IE++ ++++ Sbjct: 407 IERVTRQRIE 416 >gi|167622797|ref|YP_001673091.1| ATP-dependent RNA helicase SrmB [Shewanella halifaxensis HAW-EB4] gi|167352819|gb|ABZ75432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 411 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 227/373 (60%), Gaps = 14/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L P+++ ++ G+ KPT IQ +TIP+ +++ D+ A TGTGKTASF+LP L Sbjct: 4 MQFEDLQLDPRLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPAL 63 Query: 61 TIL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L GRARV LIL PTRELA+Q+ L ++ GG+P+ Sbjct: 64 QHLLDFPRRYGGRARV-----LILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGP 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L++ D+L+ TPGR++++ ++G +E+L+IDEADRMLDMGF ++ I Sbjct: 119 QEEALQKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVETIAIES 178 Query: 175 PFTRQTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +QT+LFSAT+ ++ + S L NP ++E P S I H ++ + K A Sbjct: 179 VGRKQTMLFSATLEGSDVGRFSHELLTNPVKLEAEAPRSEKAKI-HQWIHLADDKAHKFA 237 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL+ Q+ ++ I+F ++ V +L L+K+G + + G+++Q++R + L F + Sbjct: 238 LLCALLK-QEEVQRTIVFVKTREAVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTK 296 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G + +++A+D+AARG+DI D+ HV NFD+P A+ Y+HRIGRTGRAG G A +LV D Sbjct: 297 GEVNILLATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHD 356 Query: 354 IKHIDAIEKLIEK 366 I+ + IE+ IE+ Sbjct: 357 IRVVGKIERYIEQ 369 >gi|38704144|ref|NP_312070.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. Sakai] gi|161367519|ref|NP_289738.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 EDL933] gi|168749243|ref|ZP_02774265.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4113] gi|168754142|ref|ZP_02779149.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4401] gi|168762127|ref|ZP_02787134.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4501] gi|168769579|ref|ZP_02794586.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4486] gi|168773172|ref|ZP_02798179.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4196] gi|168781305|ref|ZP_02806312.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4076] gi|168786046|ref|ZP_02811053.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869] gi|168797762|ref|ZP_02822769.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508] gi|195938382|ref|ZP_03083764.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. EC4024] gi|208806131|ref|ZP_03248468.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4206] gi|208812019|ref|ZP_03253348.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4045] gi|208818284|ref|ZP_03258604.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4042] gi|209400297|ref|YP_002272633.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4115] gi|217327948|ref|ZP_03444031.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. TW14588] gi|254795113|ref|YP_003079950.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. TW14359] gi|261228174|ref|ZP_05942455.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. FRIK2000] gi|261255030|ref|ZP_05947563.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. FRIK966] gi|291284538|ref|YP_003501356.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615] gi|331684811|ref|ZP_08385403.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299] gi|32171494|sp|Q8XA87|DEAD_ECO57 RecName: Full=Cold-shock DEAD box protein A; AltName: Full=ATP-dependent RNA helicase deaD gi|187770756|gb|EDU34600.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4196] gi|188016396|gb|EDU54518.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4113] gi|189001016|gb|EDU70002.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4076] gi|189358785|gb|EDU77204.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4401] gi|189361392|gb|EDU79811.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4486] gi|189367581|gb|EDU85997.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4501] gi|189374042|gb|EDU92458.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869] gi|189379846|gb|EDU98262.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508] gi|208725932|gb|EDZ75533.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4206] gi|208733296|gb|EDZ81983.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4045] gi|208738407|gb|EDZ86089.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4042] gi|209161697|gb|ACI39130.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4115] gi|217320315|gb|EEC28740.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. TW14588] gi|254594513|gb|ACT73874.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359] gi|290764411|gb|ADD58372.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615] gi|320189516|gb|EFW64175.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. EC1212] gi|320640234|gb|EFX09806.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. G5101] gi|320645531|gb|EFX14540.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str. 493-89] gi|320650841|gb|EFX19298.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str. H 2687] gi|320656222|gb|EFX24134.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661912|gb|EFX29320.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str. USDA 5905] gi|320666747|gb|EFX33726.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. LSU-61] gi|326337864|gb|EGD61698.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1125] gi|326347433|gb|EGD71158.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1044] gi|331078426|gb|EGI49632.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299] Length = 629 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|154496153|ref|ZP_02034849.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC 29799] gi|150274708|gb|EDN01772.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC 29799] Length = 636 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 160/368 (43%), Positives = 229/368 (62%), Gaps = 3/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+ ++ A+ + GY KP+PIQ K IP L DV G AQTGTGKT +F P+L Sbjct: 1 MTFRELGLTQSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R R+LIL PTRELA Q+ ++FE YGK+ L A++ GG+ + Q KL+ Sbjct: 61 QRLGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKHLPLRSAVIFGGVGQQPQVDKLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+LD +G + ++ +EI V+DEADRMLDMGF+ ++ + L+P +QT Sbjct: 121 KGVDILVATPGRLLDLQGQGFVDLSRLEIFVLDEADRMLDMGFLHDVRRVLKLLPAVKQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ + L+NP ++ V+ SS E I+ K LL L++ Sbjct: 181 LFFSATMPPEVMDLVNGLLKNPVKVAVDPVSSPVEIIDQSVY--LVDKGNKTKLLAWLVE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D +KN I+F K + L K G + AIHGN Q +R + L++FK G ++ +V Sbjct: 239 GLD-VKNAIVFTRTKHGANKVAGDLVKAGITAAAIHGNKSQTARQQALADFKAGKVRCLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ HVFN+++P E Y+HRIGRTGRAGR G A + + +++ I Sbjct: 298 ATDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGRGGTAVSFCDFGEQEYLKDI 357 Query: 361 EKLIEKKV 368 EKLI +KV Sbjct: 358 EKLIGRKV 365 >gi|320202076|gb|EFW76651.1| Cold-shock DEAD-box protein A [Escherichia coli EC4100B] Length = 629 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|157148730|ref|YP_001456049.1| ATP-dependent RNA helicase DeaD [Citrobacter koseri ATCC BAA-895] gi|157085935|gb|ABV15613.1| hypothetical protein CKO_04559 [Citrobacter koseri ATCC BAA-895] Length = 649 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILDALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|162138368|ref|YP_542567.2| ATP-dependent RNA helicase DeaD [Escherichia coli UTI89] Length = 629 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|332998804|gb|EGK18400.1| cold-shock DEAD box protein A [Shigella flexneri VA-6] Length = 629 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|315617245|gb|EFU97854.1| cold-shock DEAD box protein A [Escherichia coli 3431] Length = 632 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522] gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 500 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 220/373 (58%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL + P +V A+ G+ + TPIQ K IPL + D+ G AQTGTGKT +F +P Sbjct: 4 FKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIP---C 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E+ + P+ L+L PTRELA QVA+ K G+ + + GG Q L++ Sbjct: 61 VEQVVVEEKHPQALVLTPTRELAIQVAEELNKLGQVKGIKALPIYGGQEITRQITALKKR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR +DH R + ++I+V+DEAD ML MGFI I+ I VP RQTLL Sbjct: 121 PQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQLLQ 240 FSATM +L+ +++ F+ P I V T E IE ++A ++ C LL Sbjct: 181 FSATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLL----- 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +T + IIF K+ V L SL +GF+V +HG++ Q R +++ FK G+I +MV Sbjct: 236 DMETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HV NFD+P +E+Y+HRIGRTGRAG+ G +++ V ++ H+ I Sbjct: 296 ATDVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYI 355 Query: 361 EKLIEKKVDWLNG 373 E+ +K+ ++ Sbjct: 356 EESTRQKMKQVDA 368 >gi|46580391|ref|YP_011199.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str. Hildenborough] gi|46449808|gb|AAS96458.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str. Hildenborough] gi|311233634|gb|ADP86488.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1] Length = 462 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 147/365 (40%), Positives = 215/365 (58%), Gaps = 8/365 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADL LSP+++ A+ GY +PTP+Q IP L DV +A TGTGKTA+FVLPML Sbjct: 1 MTFADLSLSPRLLAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPML 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R VR L++ PTRELA Q D+ + G L + GG+ AQ +L Sbjct: 61 QRLMDGPRGAVR---ALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G +V++ PGR+LDH RG L ++++E+LV+DE D + D+GF+ ++ + +VP T Q Sbjct: 118 RAGVEVVVGCPGRLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPATCQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM D ++ ++ L+ P ++V+ A T+ H A + LL+ L Sbjct: 178 RMLFSATMPDAVRVLAAEALRQPVTVQVDA-VQPASTVHHALYPVPAHL--RTPLLKTFL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +S + ++F + L L+ GFSV + G + QR R+ L F++G ++ Sbjct: 235 RSGPE-GSVVVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV N+DVP+ A+ YIHR+GRTGRA R+G A T V D + Sbjct: 294 VATDVAARGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPADEAQVRN 353 Query: 360 IEKLI 364 IE+++ Sbjct: 354 IERVL 358 >gi|89109927|ref|AP_003707.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. W3110] gi|90111550|ref|NP_417631.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|110643403|ref|YP_671133.1| ATP-dependent RNA helicase DeaD [Escherichia coli 536] gi|161485815|ref|NP_708963.3| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 301] gi|161486111|ref|NP_755783.2| ATP-dependent RNA helicase DeaD [Escherichia coli CFT073] gi|161486429|ref|NP_838673.2| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 2457T] gi|161984848|ref|YP_409545.2| ATP-dependent RNA helicase DeaD [Shigella boydii Sb227] gi|161986443|ref|YP_312118.2| ATP-dependent RNA helicase DeaD [Shigella sonnei Ss046] gi|170018586|ref|YP_001723540.1| ATP-dependent RNA helicase DeaD [Escherichia coli ATCC 8739] gi|170082699|ref|YP_001732019.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|170684314|ref|YP_001745436.1| ATP-dependent RNA helicase DeaD [Escherichia coli SMS-3-5] gi|191172194|ref|ZP_03033737.1| cold-shock DEAD box protein A [Escherichia coli F11] gi|193062213|ref|ZP_03043309.1| cold-shock DEAD box protein A [Escherichia coli E22] gi|194427708|ref|ZP_03060255.1| cold-shock DEAD box protein A [Escherichia coli B171] gi|194438758|ref|ZP_03070844.1| cold-shock DEAD box protein A [Escherichia coli 101-1] gi|215488480|ref|YP_002330911.1| ATP-dependent RNA helicase DeaD [Escherichia coli O127:H6 str. E2348/69] gi|218550447|ref|YP_002384238.1| ATP-dependent RNA helicase DeaD [Escherichia fergusonii ATCC 35469] gi|218560234|ref|YP_002393147.1| ATP-dependent RNA helicase DeaD [Escherichia coli S88] gi|218691454|ref|YP_002399666.1| ATP-dependent RNA helicase DeaD [Escherichia coli ED1a] gi|218696869|ref|YP_002404536.1| ATP-dependent RNA helicase DeaD [Escherichia coli 55989] gi|238902266|ref|YP_002928062.1| ATP-dependent RNA helicase [Escherichia coli BW2952] gi|253772002|ref|YP_003034833.1| ATP-dependent RNA helicase DeaD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163106|ref|YP_003046214.1| ATP-dependent RNA helicase DeaD [Escherichia coli B str. REL606] gi|256018918|ref|ZP_05432783.1| ATP-dependent RNA helicase DeaD [Shigella sp. D9] gi|256024262|ref|ZP_05438127.1| ATP-dependent RNA helicase DeaD [Escherichia sp. 4_1_40B] gi|260845977|ref|YP_003223755.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str. 12009] gi|293416596|ref|ZP_06659235.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185] gi|301025993|ref|ZP_07189475.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1] gi|306816494|ref|ZP_07450626.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101] gi|307139849|ref|ZP_07499205.1| ATP-dependent RNA helicase DeaD [Escherichia coli H736] gi|312968499|ref|ZP_07782708.1| cold-shock DEAD box protein A [Escherichia coli 2362-75] gi|312972567|ref|ZP_07786740.1| cold-shock DEAD box protein A [Escherichia coli 1827-70] gi|331659451|ref|ZP_08360393.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206] gi|331664776|ref|ZP_08365681.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143] gi|331669991|ref|ZP_08370836.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271] gi|71154182|sp|P0A9P7|DEAD_ECOL6 RecName: Full=Cold-shock DEAD box protein A; AltName: Full=ATP-dependent RNA helicase deaD gi|71154193|sp|P0A9P6|DEAD_ECOLI RecName: Full=Cold-shock DEAD box protein A; AltName: Full=ATP-dependent RNA helicase deaD; AltName: Full=Translation factor W2 gi|71154222|sp|P0A9P8|DEAD_SHIFL RecName: Full=Cold-shock DEAD box protein A; AltName: Full=ATP-dependent RNA helicase deaD gi|85675958|dbj|BAE77208.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr. W3110] gi|87082221|gb|AAC76196.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|110344995|gb|ABG71232.1| probable ATP-dependent RNA helicase DeaD [Escherichia coli 536] gi|169753514|gb|ACA76213.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739] gi|169890534|gb|ACB04241.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|170522032|gb|ACB20210.1| cold-shock DEAD box protein A [Escherichia coli SMS-3-5] gi|190907504|gb|EDV67100.1| cold-shock DEAD box protein A [Escherichia coli F11] gi|192932433|gb|EDV85031.1| cold-shock DEAD box protein A [Escherichia coli E22] gi|194414216|gb|EDX30491.1| cold-shock DEAD box protein A [Escherichia coli B171] gi|194422230|gb|EDX38231.1| cold-shock DEAD box protein A [Escherichia coli 101-1] gi|215266552|emb|CAS10991.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69] gi|218353601|emb|CAU99787.1| ATP-dependent RNA helicase [Escherichia coli 55989] gi|218357988|emb|CAQ90634.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469] gi|218367003|emb|CAR04774.1| ATP-dependent RNA helicase [Escherichia coli S88] gi|218429018|emb|CAR09825.1| ATP-dependent RNA helicase [Escherichia coli ED1a] gi|238860045|gb|ACR62043.1| ATP-dependent RNA helicase [Escherichia coli BW2952] gi|242378707|emb|CAQ33497.1| DeaD, DEAD-box RNA helicase [Escherichia coli BL21(DE3)] gi|253323046|gb|ACT27648.1| DEAD/DEAH box helicase domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975007|gb|ACT40678.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606] gi|253979163|gb|ACT44833.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)] gi|257761124|dbj|BAI32621.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str. 12009] gi|260447809|gb|ACX38231.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1] gi|291431952|gb|EFF04935.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185] gi|299879888|gb|EFI88099.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1] gi|305850059|gb|EFM50518.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101] gi|307555258|gb|ADN48033.1| cold-shock DeaD box ATP-dependent RNA helicase [Escherichia coli ABU 83972] gi|307625237|gb|ADN69541.1| ATP-dependent RNA helicase DeaD [Escherichia coli UM146] gi|309703590|emb|CBJ02930.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli ETEC H10407] gi|310332509|gb|EFP99722.1| cold-shock DEAD box protein A [Escherichia coli 1827-70] gi|312286717|gb|EFR14628.1| cold-shock DEAD box protein A [Escherichia coli 2362-75] gi|313648596|gb|EFS13038.1| cold-shock DEAD box protein A [Shigella flexneri 2a str. 2457T] gi|315137750|dbj|BAJ44909.1| ATP-dependent RNA helicase DeaD [Escherichia coli DH1] gi|320181438|gb|EFW56356.1| Cold-shock DEAD-box protein A [Shigella boydii ATCC 9905] gi|320194648|gb|EFW69278.1| Cold-shock DEAD-box protein A [Escherichia coli WV_060327] gi|323162856|gb|EFZ48691.1| cold-shock DEAD box protein A [Escherichia coli E128010] gi|323165120|gb|EFZ50910.1| cold-shock DEAD box protein A [Shigella sonnei 53G] gi|323173578|gb|EFZ59207.1| cold-shock DEAD box protein A [Escherichia coli LT-68] gi|323189215|gb|EFZ74499.1| cold-shock DEAD box protein A [Escherichia coli RN587/1] gi|323936142|gb|EGB32436.1| DEAD/DEAH box helicase [Escherichia coli E1520] gi|323941736|gb|EGB37915.1| DEAD/DEAH box helicase [Escherichia coli E482] gi|323951318|gb|EGB47193.1| DEAD/DEAH box helicase [Escherichia coli H252] gi|323957689|gb|EGB53403.1| DEAD/DEAH box helicase [Escherichia coli H263] gi|323961066|gb|EGB56681.1| DEAD/DEAH box helicase [Escherichia coli H489] gi|323966344|gb|EGB61778.1| DEAD/DEAH box helicase [Escherichia coli M863] gi|323970273|gb|EGB65544.1| DEAD/DEAH box helicase [Escherichia coli TA007] gi|323979119|gb|EGB74197.1| DEAD/DEAH box helicase [Escherichia coli TW10509] gi|324115232|gb|EGC09196.1| DEAD/DEAH box helicase [Escherichia fergusonii B253] gi|324119529|gb|EGC13411.1| DEAD/DEAH box helicase [Escherichia coli E1167] gi|325498745|gb|EGC96604.1| ATP-dependent RNA helicase [Escherichia fergusonii ECD227] gi|327251943|gb|EGE63629.1| cold-shock DEAD box protein A [Escherichia coli STEC_7v] gi|330909220|gb|EGH37734.1| cold-shock DEAD-box protein A [Escherichia coli AA86] gi|331054033|gb|EGI26062.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206] gi|331058024|gb|EGI30006.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143] gi|331062904|gb|EGI34818.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271] gi|332086106|gb|EGI91268.1| cold-shock DEAD box protein A [Shigella boydii 5216-82] gi|332090717|gb|EGI95811.1| cold-shock DEAD box protein A [Shigella boydii 3594-74] gi|332752322|gb|EGJ82712.1| cold-shock DEAD box protein A [Shigella flexneri 4343-70] gi|332752849|gb|EGJ83234.1| cold-shock DEAD box protein A [Shigella flexneri K-671] gi|332754390|gb|EGJ84756.1| cold-shock DEAD box protein A [Shigella flexneri 2747-71] gi|332765159|gb|EGJ95386.1| csdA, DEAD-box RNA helicase [Shigella flexneri 2930-71] gi|332999241|gb|EGK18827.1| cold-shock DEAD box protein A [Shigella flexneri K-272] gi|333000407|gb|EGK19990.1| cold-shock DEAD box protein A [Shigella flexneri K-218] gi|333014540|gb|EGK33887.1| cold-shock DEAD box protein A [Shigella flexneri K-304] gi|333014963|gb|EGK34307.1| cold-shock DEAD box protein A [Shigella flexneri K-227] Length = 629 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC BAA-2122] gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC BAA-2122] Length = 620 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 162/461 (35%), Positives = 258/461 (55%), Gaps = 35/461 (7%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ +IP +++ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNDAILSALDGMGFVSPTPIQAASIPHLMKGSDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 LE + R P+ ++L PTRELA QVA + G+N + L V + GG Q + L Sbjct: 66 NKLELSQ---RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+ + E FL+NP I+V + T + +E F +K + +LL Sbjct: 183 RVLFSATMPPMLKNIVERFLRNPITIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV ++ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 IE++ + ++ + P +K+ A+ ++ ++K H Sbjct: 360 IERVTKSTMEEIQ------LPHRDKVAAAR----------------LEKLGAELETEKEH 397 Query: 420 IPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460 L++ ++ + QD E DA +L A +L + +GK Sbjct: 398 KALEKFTELVEKLQDTLELDAATLA------AILLKRQQGK 432 >gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] Length = 527 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 221/369 (59%), Gaps = 12/369 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L KV+ A+ G+ +P+ IQ + IP++L +D+ G AQTGTGKT +F P+L+ Sbjct: 6 FSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVLSQ 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E L+L PTRELA QV D + K + + GG P + Q K L RG Sbjct: 66 IESSDK----ISALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRRG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGRILDH R L ++ + LV+DE+D ML+MGFI I+ I + RQTLL Sbjct: 122 VDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTLL 181 Query: 183 FSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM E+ K++ +++N K I++ S T E I+ + V ++ C +L Sbjct: 182 FSATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRIL---- 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + IIFC K+ V L S++ +G++V +HG++ Q R+ L FKEGT+ + Sbjct: 238 -DIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV HV N+D+P E+Y+HRIGRTGRA + G A++LV + I Sbjct: 297 VATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQ 356 Query: 360 IEKLIEKKV 368 +EK + K+ Sbjct: 357 LEKFTKSKI 365 >gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603] gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603] Length = 509 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 227/386 (58%), Gaps = 19/386 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F +LG+S K V + G+ +PTPIQ +IP L+ HD+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIE 62 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + E+G ++LIL PTRELA QVA+ + + K N+ V + GG+P E Q K L Sbjct: 63 KVVGEQG------VQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKAL 116 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178 ++G +++ TPGR++DH NR L N+I L++DEAD M++MGFI ++ I +P R Sbjct: 117 KKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQR 176 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATM +Q + + F++ PK I+ + I+ + T + +K Sbjct: 177 QTMLFSATMPKAIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNF 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + I+F K+ V L +L +G+ +HG+I Q R+++L FK I + Sbjct: 235 LDVHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 IE D N +++L PP K Sbjct: 354 QIE-------DANNRRMTALRPPHRK 372 >gi|330811885|ref|YP_004356347.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379993|gb|AEA71343.1| Putative ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 445 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 219/368 (59%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + +P VL D+ AQTGTGKTA F +P+L Sbjct: 1 MTFATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L E + R LIL PTRELA QV ++ +Y +N L+ + GG+ Q K Sbjct: 61 QLLTTEGPKVAANSVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD F + L N ++ LV+DEADRMLD+GF + NI +P R Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D ++ ++ L +P IEV+ + A T++ V +K L L Sbjct: 181 QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTV--DKKRKPELFVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++ + ++F + V L L+ G + IHG+ Q +R + L FK +Q+ Sbjct: 239 MR-KNKWRQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKASEVQI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V NFD+P AE+YIHRIGRTGRAG G+A +LV +++ + Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNLLS 357 Query: 359 AIEKLIEK 366 AIE L + Sbjct: 358 AIEMLTRQ 365 >gi|307313131|ref|ZP_07592757.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|306907042|gb|EFN37550.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|315062470|gb|ADT76797.1| ATP-dependent RNA helicase [Escherichia coli W] gi|323376942|gb|ADX49210.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11] Length = 629 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|182415515|ref|YP_001820581.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae PB90-1] gi|177842729|gb|ACB76981.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1] Length = 594 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 229/378 (60%), Gaps = 9/378 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLSP+++ AV G+ + PIQ IP VL DV G++ TG+GKT +F +P L Sbjct: 6 FAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPAL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121 E+ ++R + L+L PTRELA QVA+ + + + I GG +E Q + L Sbjct: 64 -ERVDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAA 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G+ V+I TPGR++DH RG L + ++++V+DEADRMLDMGF I+ I S VP RQ L Sbjct: 123 GSQVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM +Q++ + ++P I++ + A +E + K L +L+ Sbjct: 183 FFSATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEV--DRRSKLEALTRLIDV 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + GI+FC+ K V +L L +G++V +HG++ Q R +++ F+ + ++A Sbjct: 241 HD-FRYGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ D+ VFN+D+PN AE+Y HRIGRTGRAG+ G+AFT V+ ++I + A+ Sbjct: 300 TDVAARGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMV 359 Query: 362 KLIEKKVDWLNGDLSSLN 379 + K+D G L SL+ Sbjct: 360 RW--AKLDLRRGRLPSLD 375 >gi|90416373|ref|ZP_01224305.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium HTCC2207] gi|90332098|gb|EAS47312.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium HTCC2207] Length = 619 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 147/375 (39%), Positives = 230/375 (61%), Gaps = 11/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 +DFA LG+S V+ AV GY +P+P+Q +IP++L+ ++ G AQTGTGKTA+F LP L Sbjct: 4 VDFASLGISAPVLKAVQQLGYEQPSPVQEASIPILLEGKNLLGTAQTGTGKTAAFALPFL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + L++ + + P+ L+L PTRELA QVA+ F+ Y K+ V + GG Q + L Sbjct: 64 SKLDE---KQKTPQVLVLTPTRELAIQVAEAFQSYAKHIKGFHVLPIYGGADIGGQLRGL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RGA V++ TPGR+LDH R L ++ I+ L++DEAD ML MGFI ++ I + P Q Sbjct: 121 KRGAQVVVGTPGRMLDHLRRRSLDLSQIKGLILDEADEMLRMGFIDDVETILAKTPPECQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237 LFSATM +++V++ +L + + + + + T E I H V + + +L Sbjct: 181 RTLFSATMPPAIKRVADKYLGDAEVVSIENKTKTVERIAQSHLMVKGHQKMDALTRILD- 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ D M IIF K + + + LE +GFS A++G++ Q R + ++ K+G + Sbjct: 240 -VEQFDGM---IIFVRTKSSTLEIAEKLEARGFSSAALNGDLTQTVRERTINRLKKGQLD 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+DVP E+Y+HRIGRTGRAGR GKA V +++ + + Sbjct: 296 IVVATDVAARGLDVERISHVINYDVPYDNESYVHRIGRTGRAGREGKAIMFVTQKETRML 355 Query: 358 DAIEKLIEKKVDWLN 372 +IEK + + N Sbjct: 356 RSIEKSTRQPISSFN 370 >gi|33152628|ref|NP_873981.1| ATP-dependent RNA helicase [Haemophilus ducreyi 35000HP] gi|33148852|gb|AAP96370.1| cold-shock DEAD box protein-A [Haemophilus ducreyi 35000HP] Length = 606 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 231/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DLGL ++ AV D +V P+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFSDLGLPQSILDAVNDMSFVTPSPIQQECIPHLLAGSDVLGMAQTGSGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L++ PTRELA QVAD E++ KN + V + GG ++ Q + L Sbjct: 66 AQIDPNQ---RHPQMLVMAPTRELAIQVADACEQFTKNMKGIRVVTVYGGQRYDIQLRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G+ V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 123 KQGSQVVVGTPGRILDHIRRGTLNLSTLKSIVLDEADEMLRMGFIDDVETVMAELPEKHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+ +PK +++ +A I + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITRRFMSDPKEVKIQATQRSAPDITQSYWLVNG-FRKNEALLRFL- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + IIF K +++ E+ G+ A++G++ Q++R + L K G + ++ Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 359 Query: 360 IEKLIEKKVD 369 IE+L++K +D Sbjct: 360 IEQLMKKPID 369 >gi|312947721|gb|ADR28548.1| ATP-dependent RNA helicase DeaD [Escherichia coli O83:H1 str. NRG 857C] Length = 629 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|311277865|ref|YP_003940096.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter cloacae SCF1] gi|308747060|gb|ADO46812.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1] Length = 643 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 226/364 (62%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLRMGFIEDVETIMAEIPDGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P E+Y+HRIGRTGRAGR G+A V + + + IE Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDTESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 362 KLIE 365 +L++ Sbjct: 362 RLMK 365 >gi|301022016|ref|ZP_07185959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1] gi|300397731|gb|EFJ81269.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1] Length = 646 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|209758404|gb|ACI77514.1| inducible ATP-independent RNA helicase [Escherichia coli] Length = 646 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVATRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|163789335|ref|ZP_02183776.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium ALC-1] gi|159875403|gb|EDP69466.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium ALC-1] Length = 411 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 151/372 (40%), Positives = 234/372 (62%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL + A+ +GYV+PT +Q + IP +L + DV AQTGTGKTA+F LP+L Sbjct: 1 MSFKDLGLIKPLQKAIEASGYVEPTLVQQRAIPPILDKKDVIVSAQTGTGKTAAFALPIL 60 Query: 61 TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + R + + LI+ PTRELA Q+ NF+ Y + NL ++ GG E Q Sbjct: 61 QQLFDQQDAPKRGKKIKALIISPTRELAVQIQQNFKTYAQFTNLRSLVIFGGTSIEPQID 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+L+ TPGR+LD + + +++IE V+DEAD ML MGFI ++ I L P Sbjct: 121 VLKKGIDILVATPGRLLDLHKQDYVNLDHIETFVLDEADLMLAMGFIDDVKKIERLCPEN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSAT+ ++++++ L++P+RI+V S A+ + + Y K L Sbjct: 181 KQTLLFSATIPYKIEQLASGILKDPERIDVTPTRSVAKDVSQ--ILYYVPKRNKIELCLH 238 Query: 238 LLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++T+K N +IF K V L +L K G++V +IHG+ +Q R L+ FK G + Sbjct: 239 LM--RNTIKGNVLIFRRTKFGVNKLEQTLLKNGYTVDSIHGDKNQSDRQTALNKFKNGYV 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++++A+D+AARG+DI ++ +VFNFD+PN+AE Y+HRIGRTGRAG GKA+ + + ++ + Sbjct: 297 KVLIATDVAARGIDIDELDNVFNFDMPNQAETYVHRIGRTGRAGNIGKAYAMCSADEKSY 356 Query: 357 IDAIEKLIEKKV 368 + IE+ I ++ Sbjct: 357 VKIIEQYINVQI 368 >gi|81242624|gb|ABB63334.1| inducible ATP-independent RNA helicase [Shigella dysenteriae Sd197] Length = 646 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GQQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|293406774|ref|ZP_06650700.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412] gi|298382514|ref|ZP_06992111.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302] gi|300897926|ref|ZP_07116305.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1] gi|291426780|gb|EFE99812.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412] gi|298277654|gb|EFI19170.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302] gi|300358356|gb|EFJ74226.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1] Length = 650 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|117625458|ref|YP_858781.1| ATP-dependent RNA helicase DeaD [Escherichia coli APEC O1] gi|209920639|ref|YP_002294723.1| ATP-dependent RNA helicase DeaD [Escherichia coli SE11] gi|227887886|ref|ZP_04005691.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972] gi|300817586|ref|ZP_07097802.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1] gi|300904348|ref|ZP_07122201.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1] gi|300918917|ref|ZP_07135476.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1] gi|300926099|ref|ZP_07141917.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1] gi|300948811|ref|ZP_07162879.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1] gi|300955748|ref|ZP_07168093.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1] gi|300977829|ref|ZP_07174069.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1] gi|300990761|ref|ZP_07179333.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1] gi|301301782|ref|ZP_07207916.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1] gi|301326415|ref|ZP_07219769.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1] gi|301644873|ref|ZP_07244845.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1] gi|606102|gb|AAA57965.1| two frameshifts relative to ECODEAD [Escherichia coli str. K-12 substr. MG1655] gi|30042761|gb|AAP18484.1| inducible ATP-independent RNA helicase [Shigella flexneri 2a str. 2457T] gi|56383827|gb|AAN44670.2| inducible ATP-independent RNA helicase [Shigella flexneri 2a str. 301] gi|73857176|gb|AAZ89883.1| inducible ATP-independent RNA helicase [Shigella sonnei Ss046] gi|81247009|gb|ABB67717.1| inducible ATP-independent RNA helicase [Shigella boydii Sb227] gi|115514582|gb|ABJ02657.1| inducible ATP-independent RNA helicase [Escherichia coli APEC O1] gi|209913898|dbj|BAG78972.1| RNA helicase [Escherichia coli SE11] gi|227835282|gb|EEJ45748.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972] gi|281180206|dbj|BAI56536.1| RNA helicase [Escherichia coli SE15] gi|300308206|gb|EFJ62726.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1] gi|300317381|gb|EFJ67165.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1] gi|300403699|gb|EFJ87237.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1] gi|300407069|gb|EFJ90607.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1] gi|300413943|gb|EFJ97253.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1] gi|300417864|gb|EFK01175.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1] gi|300451700|gb|EFK15320.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1] gi|300529884|gb|EFK50946.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1] gi|300842763|gb|EFK70523.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1] gi|300846904|gb|EFK74664.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1] gi|301076818|gb|EFK91624.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1] gi|315257088|gb|EFU37056.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 85-1] gi|315288936|gb|EFU48334.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 110-3] gi|315294907|gb|EFU54246.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 153-1] gi|315297886|gb|EFU57156.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 16-3] gi|324008761|gb|EGB77980.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 57-2] gi|324012112|gb|EGB81331.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 60-1] gi|324018314|gb|EGB87533.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 117-3] Length = 646 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|293391610|ref|ZP_06635944.1| preprotein translocase subunit SecF [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952144|gb|EFE02263.1| preprotein translocase subunit SecF [Aggregatibacter actinomycetemcomitans D7S-1] Length = 595 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 232/373 (62%), Gaps = 13/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL ++ AV D G+ P+PIQ IP +L+ DV G+AQTG+GKTA+F LP+L Sbjct: 1 MTFMDLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 ++ + P+ L++ PTRELA QVAD F KY K N+ L GG ++ Q + Sbjct: 61 AKIDPNE---KHPQLLVMAPTRELAIQVADACEQFMKYAKGINIVT--LYGGQRYDIQLR 115 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++GA V++ TPGRILDH RG L + ++ +V+DEAD ML MGFI ++ + + +P Sbjct: 116 ALKQGAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEH 175 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QT LFSATM + ++++++ F+++P+ I++ +A I + C+ Y +K L Sbjct: 176 HQTALFSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCW---YVHGFRKNDALL 232 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L+ +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ Sbjct: 233 RFLEVED-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSL 291 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + Sbjct: 292 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRL 351 Query: 357 IDAIEKLIEKKVD 369 + +E LI+K ++ Sbjct: 352 LRNVEHLIKKNIE 364 >gi|194433764|ref|ZP_03066039.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012] gi|194418027|gb|EDX34121.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012] gi|332086479|gb|EGI91626.1| cold-shock DEAD box protein A [Shigella dysenteriae 155-74] Length = 603 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str. F0314] gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str. F0314] Length = 443 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 221/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ + +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ +NP+ IEV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKNPEIIEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I++K+ Sbjct: 361 IEKYIDRKL 369 >gi|297521217|ref|ZP_06939603.1| ATP-dependent RNA helicase DeaD [Escherichia coli OP50] Length = 569 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|331679243|ref|ZP_08379915.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591] gi|331073308|gb|EGI44631.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591] Length = 651 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 30 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 90 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 384 RTMKLTIPEVELPNAEL 400 >gi|331654768|ref|ZP_08355768.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD) [Escherichia coli M718] gi|331048150|gb|EGI20227.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD) [Escherichia coli M718] Length = 651 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 30 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 90 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 384 RTMKLTIPEVELPNAEL 400 >gi|261868715|ref|YP_003256637.1| cold-shock deAd box protein a [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414047|gb|ACX83418.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 595 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 232/373 (62%), Gaps = 13/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL ++ AV D G+ P+PIQ IP +L+ DV G+AQTG+GKTA+F LP+L Sbjct: 1 MTFMDLGLPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 ++ + P+ L++ PTRELA QVAD F KY K N+ L GG ++ Q + Sbjct: 61 AKIDPNE---KHPQLLVMAPTRELAIQVADACEQFMKYAKGINIVT--LYGGQRYDIQLR 115 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++GA V++ TPGRILDH RG L + ++ +V+DEAD ML MGFI ++ + + +P Sbjct: 116 ALKQGAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEH 175 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QT LFSATM + ++++++ F+++P+ I++ +A I + C+ Y +K L Sbjct: 176 HQTALFSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCW---YVHGFRKNDALL 232 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L+ +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ Sbjct: 233 RFLEVED-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSL 291 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + Sbjct: 292 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRL 351 Query: 357 IDAIEKLIEKKVD 369 + +E LI+K ++ Sbjct: 352 LRNVEHLIKKNIE 364 >gi|312883216|ref|ZP_07742944.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC BAA-2122] gi|309369079|gb|EFP96603.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC BAA-2122] Length = 399 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 151/372 (40%), Positives = 220/372 (59%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL ++ A+ + GY KPT IQ + IP L D+ AQTGTGKTASFVLP+L Sbjct: 1 MSFSKLGLEQPLIDAIHELGYQKPTHIQTQAIPSALSGQDLLAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G+ + + R LIL PTRELA QV + + YGK +L L GG+ +AQ + L Sbjct: 61 QKLNAGQTQKKKRARALILTPTRELALQVEEKIQSYGKYLSLKSIALYGGVDDKAQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR+LD + + + IEILV+DEAD+MLDMGFI I I +P Q Sbjct: 121 IDGIDIVVATPGRLLDLYGKRAIYFEEIEILVLDEADKMLDMGFIEGINKILDRLPRDIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++ +++ + NP I + ++ + IE + KK ALL L+ Sbjct: 181 NLLFSATLSNKVRDLAKTAVYNPYEISIAANQASKKNIEQWLITV--DKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + +IF K L LEK+G A H Q R K+L +FK G I+ + Sbjct: 239 Q-HNNWDQALIFIETKHGAAKLASQLEKRGIYAEAFHSGRSQAIRSKLLDDFKSGEIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ + ARG+DI + V N+D+P A+ Y+HRIGRTGRA +G+A + V+K++ K++ Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADANGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKK 367 IE LIE++ Sbjct: 358 IESRLGHLIERR 369 >gi|240850851|ref|YP_002972251.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup] gi|240267974|gb|ACS51562.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup] Length = 460 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 157/369 (42%), Positives = 227/369 (61%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LGL ++ +L AG KP PIQ + IP++L+ HD+ G+AQTG+GKT +F LP+L+ Sbjct: 9 FTKLGLPTLLIKNLLIAGMSKPKPIQEQAIPVMLKGHDILGVAQTGSGKTLAFGLPILSQ 68 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G R + R LIL PTRELA Q+ + K +L+ L+ GG+ Q K++E Sbjct: 69 ILALGDKRCPKTARALILAPTRELAVQIDETIRTAAKGAHLSTCLIFGGVSRLKQIKRME 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D + ++ L++DEADRMLDMGFI ++ I L+ RQT Sbjct: 129 AGVDVLIATPGRLKDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++ L +P +IEV +TA +E C ++K +L +LL Sbjct: 189 ALFSATMPREIAVLAKCLLNDPVKIEVVPQGTTA--VEICQKLYCVPTNEKKNVLSKLL- 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K ++ SL K G+SV IHGN Q +R L F+E ++Q++V Sbjct: 246 TNPAFNSVIVFTRTKHGADSVTRSLAKIGYSVATIHGNKSQGARQSALKAFRERSVQILV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359 A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G G+A TL K + + + A Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERERLRA 365 Query: 360 IEKLIEKKV 368 IE+LI K+ Sbjct: 366 IERLIRMKL 374 >gi|193067315|ref|ZP_03048283.1| cold-shock DEAD box protein A [Escherichia coli E110019] gi|192959272|gb|EDV89707.1| cold-shock DEAD box protein A [Escherichia coli E110019] Length = 629 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 243 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 362 RTMKLTIPEVELPNAEL 378 >gi|300929852|ref|ZP_07145298.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1] gi|300462214|gb|EFK25707.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1] Length = 646 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M] gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M] Length = 571 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 146/365 (40%), Positives = 222/365 (60%), Gaps = 11/365 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + P V+ A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +P+L+ Sbjct: 15 FADLQIHPSVMRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ + L+L PTRELA QVA+ F +YG + + L V + GG + Q L R Sbjct: 75 IDTTSTATQ---ALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGSSYAIQLAGLRR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++ ++ LV+DEAD ML MGF ++ I S P +Q Sbjct: 132 GAQVVVGTPGRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERILSETPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++ +L +P ++ ++TAE I ++ +K L ++L+ Sbjct: 192 LFSATMPPAIRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAG--PRKMDALTRVLEV 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K+ + L +GFS AI+G+I Q R + ++ ++G I ++VA Sbjct: 250 E-PFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRDGGIDILVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + +H + Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPRE-RH---LL 364 Query: 362 KLIEK 366 KLIEK Sbjct: 365 KLIEK 369 >gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp. zooepidemicus] gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp. zooepidemicus] Length = 538 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 227/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 N---KIRTADNTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGR+LD R L ++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ ++V T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F K+ V + L+ +GF IHG++DQ R++++ +FK + ++V Sbjct: 236 VQQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 EHLTKKRMKPL 365 >gi|90416956|ref|ZP_01224885.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207] gi|90331303|gb|EAS46547.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207] Length = 584 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 151/373 (40%), Positives = 232/373 (62%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L ++ + AG+ TPIQ ++P L+ HD+ G AQTGTGKTA+F++ +++ Sbjct: 58 FHDFDLPLPLLRGIQTAGFQYCTPIQGASLPHTLRGHDMVGKAQTGTGKTAAFLVSIISD 117 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K + R LIL PTRELA Q+ ++ E+ ++ +L V L+GG+ + Q K Sbjct: 118 LLKHPVEDERYIGEARALILAPTRELAVQIGEDAEQLVQHTDLKVHTLVGGMDYAKQLHK 177 Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 ++R D+L+ TPGR+LD + + ++ +E+LVIDEADRMLDMGFIP ++ + P Sbjct: 178 IKRAHCDILVGTPGRLLDFASNKDVHLDQVEVLVIDEADRMLDMGFIPQVRRLVRATPPK 237 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ ++SE + P ++E+ +T+E T A ++K ALL Sbjct: 238 EDRQTLLFSATFTDDVMRLSEQWTDKPVKLEMEPERVATDTVEQKIFITTA--NEKFALL 295 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q +L+S D +K+ ++F N++ L L+KQGF V I G++ Q RMK L FK G Sbjct: 296 QNILKSDD-VKSVMVFANRRDICRTLFERLKKQGFKVGLIAGDVPQARRMKTLEGFKSGA 354 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +++MVA+D+A RG+ + V HV NF +P E+Y+HRIGRTGRAG G + + ++D Sbjct: 355 LKVMVATDVAGRGIHVNGVSHVINFTLPEEPEDYVHRIGRTGRAGETGISISFACEDDAF 414 Query: 356 HIDAIEKLIEKKV 368 ++ IEKL++ K+ Sbjct: 415 LLEPIEKLLDMKL 427 >gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1] gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1] Length = 623 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 225/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + P+ L+L PTRELA QVA+ F Y K N V + GG + Q L+R Sbjct: 68 VTSQTT----PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L + ++ LV+DEAD ML MGFI I+ I P RQ Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L+N I + +T ++IE FV +Q++K AL++ +L+ Sbjct: 184 LFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQV-SQHNKLEALVR-VLEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 242 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360 Query: 362 KLIEKKV 368 + ++ Sbjct: 361 RATNSRI 367 >gi|224538852|ref|ZP_03679391.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus DSM 14838] gi|224519527|gb|EEF88632.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus DSM 14838] Length = 478 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 152/393 (38%), Positives = 229/393 (58%), Gaps = 12/393 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + +S V A+L+ Y PT IQ + IP L D+ G+AQTGTGKTA+F +P++ Sbjct: 2 MTFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAIPII 61 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + + R R LIL PTRELA Q+ ++ Y + L ++ GG+ ++Q Sbjct: 62 EQLLADPISQQKGAPRKIRALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKSQ 121 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L G D+L TPGR+LD ++G + ++++ V+DEADRMLDMGFI ++ + +P Sbjct: 122 TDELRAGTDILTATPGRLLDLMSQGFIRLDHVRHFVLDEADRMLDMGFIHDVKRLLPKLP 181 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +QTL FSATM D + +++++ L+NP R+EV SS E I + +K LL Sbjct: 182 PKKQTLFFSATMPDSIDRLAKSLLRNPARVEVTPASSVVEIISQSVY--RVEKPQKKELL 239 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 QLL + ++F K N+ L ++G + +IHG+ Q SR + LSNFKEG Sbjct: 240 AQLLLG-EAGHQVLVFSRTKHGADNIARYLSRRGITCESIHGDKSQNSRQRALSNFKEGR 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +++A+D+AARG+DI + V N+D+P+ E Y+HRIGRTGRAG G+A + E++ Sbjct: 299 SNVIIATDIAARGIDIKGLDLVLNYDLPDVPETYVHRIGRTGRAGCEGRAIAFCSGEEVP 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 + IEKL K++ DL PPLE+ A Sbjct: 359 MLREIEKLTGIKLEQRKHDL----PPLEETKTA 387 >gi|23501930|ref|NP_698057.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330] gi|23347874|gb|AAN29972.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis 1330] Length = 535 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 230/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMCDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P + HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|18310378|ref|NP_562312.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium perfringens str. 13] gi|110801126|ref|YP_696091.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC 13124] gi|110803627|ref|YP_698708.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101] gi|18145058|dbj|BAB81102.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13] gi|110675773|gb|ABG84760.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium perfringens ATCC 13124] gi|110684128|gb|ABG87498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium perfringens SM101] Length = 528 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 153/411 (37%), Positives = 243/411 (59%), Gaps = 17/411 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ A+ D G+ +P+ IQ ++IP+ L+ HD+ G AQTGTGKTA+F ++ Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + + P+ LIL PTRELA QV + + GK+ L+V + GG P + Q + L+ G Sbjct: 66 ADFS-GKKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRALKNG 124 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR+LD R L +N+I LV+DEAD ML+MGFI ++ I + RQTLL Sbjct: 125 VDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLL 184 Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM +++K++ N++ ++ K I + S T IE + + ++ C +L Sbjct: 185 FSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVL---- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D IIFC KK V + ++ +G+ V +HG++ Q R++ L FKEG++ + Sbjct: 241 -DFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV N+D+P E+Y+HRIGRTGRA R G A++LV ++ + Sbjct: 300 VATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQ 359 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN--NPIPQKSTGFDR 408 I+K + K+ + P +++I +HN+ N + I + S F + Sbjct: 360 IQKHTKSKI------IRKAVPTVDEIFQNKHNNIINNVKSTIEEASEDFQK 404 >gi|323494679|ref|ZP_08099782.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546] gi|323311112|gb|EGA64273.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546] Length = 398 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 150/372 (40%), Positives = 219/372 (58%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + + GY KPT IQ K IP++L+ D+ AQTGTGKTASFVLP+L Sbjct: 1 MPFSKLGLSQPITDVISQLGYSKPTTIQQKAIPVILRGDDLIAAAQTGTGKTASFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G R + R LIL PTRELA QV + Y KN LT + GG+ +Q + L Sbjct: 61 QKLSQGETQRKKRIRALILAPTRELAVQVEQKVQDYSKNLPLTSLAMYGGVDEASQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR++D + + + + +E+LV+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDILVATPGRLIDMYGKRAVHFDEVEVLVLDEADRMLDMGFIEDINKILDRLPTDIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++ +++ + +P I + ++ + IE + KK ALL L+ Sbjct: 181 HLLFSATLSNKVRDLAKTAVHDPYEISIAANQASKKNIEQWLITV--DKDKKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D +IF K L LEK+G A H Q R ++L++FK G I+ M Sbjct: 239 NEND-WDQALIFIETKHGAAKLASQLEKRGIIAEAFHSGRSQAVRSQLLADFKAGKIKYM 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ + ARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 298 IATGVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADASGEAISFVSKDNFKNLCM 357 Query: 360 IEK----LIEKK 367 IE LIE++ Sbjct: 358 IESRLGHLIERR 369 >gi|219870715|ref|YP_002475090.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis SH0165] gi|219690919|gb|ACL32142.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis SH0165] Length = 603 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 230/370 (62%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL ++ +V + G+V P+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFADLGLPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L++ PTRELA QVAD E++ KN + + GG ++ Q + L Sbjct: 66 AQIDPEQ---RHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 123 KNGAQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPEDHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + ++++++ F+++P+ +++ +A I + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNG-FRKNDALLRFL- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + IIF K +++ E+ G+ A++G++ Q++R + L K G + ++ Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVI 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKN 359 Query: 360 IEKLIEKKVD 369 IE LI+K +D Sbjct: 360 IEHLIKKPID 369 >gi|114153757|sp|Q9LYJ9|RH46_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 46 gi|332004672|gb|AED92055.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana] Length = 645 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 147/372 (39%), Positives = 226/372 (60%), Gaps = 14/372 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F GL +++ V AG+ P+PIQ ++ P+ +Q D+ IA+TG+GKT +++P Sbjct: 161 MSFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGF 220 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L++ RM P L+L PTRELA Q+ K+GK+ ++ A L GG P Q K++ Sbjct: 221 MHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEI 280 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG D+++ TPGR+ D ++ ++ + LV+DEADRMLDMGF P I+ I + VP RQ Sbjct: 281 ERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQ 340 Query: 180 TLLFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCA 233 TL+++AT E++K++ + L NP ++ E+ S +TIE +A ++S+ Sbjct: 341 TLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIE--VLAPMEKHSR--- 395 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L+Q+L+SQ+ IIFC+ K+ L +L + F AIHG+ Q R +L+ F+ Sbjct: 396 -LEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRS 453 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLD+ D+ V N+D PN E+Y+HRIGRTGRAG G A+T +D Sbjct: 454 GRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 513 Query: 354 IKHIDAIEKLIE 365 KH + K++E Sbjct: 514 AKHASDLIKILE 525 >gi|218706784|ref|YP_002414303.1| ATP-dependent RNA helicase DeaD [Escherichia coli UMN026] gi|218433881|emb|CAR14798.1| ATP-dependent RNA helicase [Escherichia coli UMN026] gi|284923186|emb|CBG36280.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli 042] Length = 655 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 30 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 90 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 384 RTMKLTIPEVELPNAEL 400 >gi|110807031|ref|YP_690551.1| ATP-dependent RNA helicase DeaD [Shigella flexneri 5 str. 8401] gi|157154820|ref|YP_001464636.1| ATP-dependent RNA helicase DeaD [Escherichia coli E24377A] gi|157162647|ref|YP_001459965.1| ATP-dependent RNA helicase DeaD [Escherichia coli HS] gi|187731310|ref|YP_001881921.1| ATP-dependent RNA helicase DeaD [Shigella boydii CDC 3083-94] gi|188491860|ref|ZP_02999130.1| cold-shock DEAD box protein A [Escherichia coli 53638] gi|237706085|ref|ZP_04536566.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA] gi|254038328|ref|ZP_04872386.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43] gi|293412537|ref|ZP_06655260.1| conserved hypothetical protein [Escherichia coli B354] gi|331643862|ref|ZP_08344993.1| cold-shock DEAD-box protein A [Escherichia coli H736] gi|331648963|ref|ZP_08350051.1| cold-shock DEAD-box protein A [Escherichia coli M605] gi|331674700|ref|ZP_08375459.1| cold-shock DEAD-box protein A [Escherichia coli TA280] gi|332280007|ref|ZP_08392420.1| cold-shock DEAD-box protein A [Shigella sp. D9] gi|26110171|gb|AAN82357.1|AE016767_117 Cold-shock DEAD-box protein A [Escherichia coli CFT073] gi|110616579|gb|ABF05246.1| inducible ATP-independent RNA helicase [Shigella flexneri 5 str. 8401] gi|157068327|gb|ABV07582.1| cold-shock DEAD box protein A [Escherichia coli HS] gi|157076850|gb|ABV16558.1| cold-shock DEAD box protein A [Escherichia coli E24377A] gi|187428302|gb|ACD07576.1| cold-shock DEAD box protein A [Shigella boydii CDC 3083-94] gi|188487059|gb|EDU62162.1| cold-shock DEAD box protein A [Escherichia coli 53638] gi|226839952|gb|EEH71973.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43] gi|226899125|gb|EEH85384.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA] gi|281602546|gb|ADA75530.1| Cold-shock DEAD-box protein A [Shigella flexneri 2002017] gi|291469308|gb|EFF11799.1| conserved hypothetical protein [Escherichia coli B354] gi|294492243|gb|ADE90999.1| cold-shock DEAD box protein A [Escherichia coli IHE3034] gi|331037333|gb|EGI09557.1| cold-shock DEAD-box protein A [Escherichia coli H736] gi|331042710|gb|EGI14852.1| cold-shock DEAD-box protein A [Escherichia coli M605] gi|331068139|gb|EGI39535.1| cold-shock DEAD-box protein A [Escherichia coli TA280] gi|332102359|gb|EGJ05705.1| cold-shock DEAD-box protein A [Shigella sp. D9] Length = 651 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 30 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 90 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 384 RTMKLTIPEVELPNAEL 400 >gi|91074155|gb|ABE09036.1| Cold-shock DEAD-box protein A [Escherichia coli UTI89] Length = 651 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 30 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 90 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 146 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 147 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 207 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 264 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 265 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 323 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 324 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 383 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 384 RTMKLTIPEVELPNAEL 400 >gi|84778881|dbj|BAE73658.1| inducible ATP-independent RNA helicase [Sodalis glossinidius str. 'morsitans'] Length = 627 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 149/381 (39%), Positives = 232/381 (60%), Gaps = 14/381 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 13 FADLGLKAPILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + + P+ L+L PTRELA QV + +F K+ K N V L GG ++ Q + L Sbjct: 73 I---KPELAAPQVLVLAPTRELAVQVGEACADFAKHMKGVN--VVALYGGQRYDVQLRAL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + VP Q Sbjct: 128 RQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+ P+ + + + +T I + Q +K L + L Sbjct: 188 TALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTV--QGMRKNEALVRFL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + +LE G++ A++G+++Q R + L K+G + ++ Sbjct: 246 EAED-FDAAIIFVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDIL 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356 +A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++ Sbjct: 305 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 364 Query: 357 IDAIEKLIEKKVDWLNGDLSS 377 I+ I KL +VD ++ S Sbjct: 365 IERIMKLTIPEVDLPTAEVLS 385 >gi|75287517|sp|Q5VQL1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14 gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group] gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group] gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group] gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group] Length = 708 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 222/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G P+++ V AG+ PTPIQ ++ P+ L+ D+ +A+TG+GKT +++P Sbjct: 180 MTFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGF 239 Query: 61 TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ + R P L+L PTRELA Q+ D +K+G++ ++ L GG P Q + L Sbjct: 240 ILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDL 299 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD+++ TPGR+ D ++ ++ + LV+DEADRMLDMGF P I+ I V RQ Sbjct: 300 ERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQ 359 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQ 236 TL+F+AT E++K++ + L NP ++ + +T + + + + Y +K L Sbjct: 360 TLMFTATWPKEVRKIASDLLSNPVQVNIG---NTDQLVANKSITQYVDVITPPEKSRRLD 416 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L+SQ+ IIFC+ K+ L +L +Q + AIHG+ Q R +LS F+ G Sbjct: 417 QILRSQEPGSKIIIFCSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRC 475 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T +D K+ Sbjct: 476 PILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKY 535 Query: 357 IDAIEKLIE 365 + K++E Sbjct: 536 ASDLVKILE 544 >gi|332532553|ref|ZP_08408430.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505] gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505] Length = 434 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 159/426 (37%), Positives = 248/426 (58%), Gaps = 11/426 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +P+++ A+ + Y TPIQ IP V + DV AQTGTGKTA+F LP++ Sbjct: 1 MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++E + P L+L PTRELA Q+A+NF + K+ +L V L GG+ Q L Sbjct: 61 QKLVESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D+++ TPGR+ DH G L + +++ LV+DEADRMLDMGFI +QN+ RQ Sbjct: 121 KEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +++ + L+ + + V+ +STA T+EH V + +K LL +L+ Sbjct: 181 ILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEH--VVYPVEERRKQELLSELI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F N K+ L L G HG+ Q +R + L FKEG ++++ Sbjct: 239 GKKN-WQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+++AARG+DI + V N D+P AE+Y+HRIGRTGRAGR G+A + V++E+ + Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFE 357 Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDR---RKKN 412 IE LI +K+ +L G ++S+ ++KI H ++N + ++TG R R + Sbjct: 358 IETLIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRSNKLSGQATGEARAVNRSRI 417 Query: 413 YSSQKS 418 S +KS Sbjct: 418 SSVRKS 423 >gi|162382798|ref|YP_454063.2| ATP-dependent RNA helicase DeaD [Sodalis glossinidius str. 'morsitans'] Length = 622 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 149/381 (39%), Positives = 232/381 (60%), Gaps = 14/381 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 8 FADLGLKAPILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + + P+ L+L PTRELA QV + +F K+ K N V L GG ++ Q + L Sbjct: 68 I---KPELAAPQVLVLAPTRELAVQVGEACADFAKHMKGVN--VVALYGGQRYDVQLRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G V++ TPGR+LDH RG L ++N+ LV+DEAD ML MGFI ++NI + VP Q Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+ P+ + + + +T I + Q +K L + L Sbjct: 183 TALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTV--QGMRKNEALVRFL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D IIF K + + +LE G++ A++G+++Q R + L K+G + ++ Sbjct: 241 EAED-FDAAIIFVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356 +A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++ Sbjct: 300 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 Query: 357 IDAIEKLIEKKVDWLNGDLSS 377 I+ I KL +VD ++ S Sbjct: 360 IERIMKLTIPEVDLPTAEVLS 380 >gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 7169] gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 46P47B1] gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 103P14B1] gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis BC1] gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis BC8] gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 101P30B1] gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis CO72] Length = 581 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 229/368 (62%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGL+ ++ A+ +GY PTPIQ K IP L D+ AQTG+GKTA+FVLP+L Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + + LIL PTRELA QV D+ +YG N+ L+GG P+ Q + L++ Sbjct: 80 MSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK 139 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH G++ ++ +++L++DEADRMLDMGF I+ I P TRQT+ Sbjct: 140 GVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTV 199 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240 + SAT + K++E+F NP+++ + S+ E++ +C ++ K +L Q+L Sbjct: 200 MSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYC-----DDFNHKNNILLQVLN 254 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +K +IF K + L L + GF +HG++ Q R +I+S+ K G ++V Sbjct: 255 NP-KIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV N+D+P + E+Y+HRIGR GRAGR G A L + +D + ++ I Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373 Query: 361 EKLIEKKV 368 + +++++ Sbjct: 374 NRYLKRQM 381 >gi|300823875|ref|ZP_07103999.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7] gi|309793740|ref|ZP_07688166.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7] gi|300523643|gb|EFK44712.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7] gi|308122697|gb|EFO59959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7] Length = 646 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 634 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 229/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ ++ + GY PTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 7 FRELGLSESLLRSLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNK 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ F Y K V + GG + Q L+R Sbjct: 67 ID---MKINAPQILVLAPTRELAVQVAEAFGSYAKFMKGFHVLPIYGGQSMQQQLNALKR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L ++N++ LV+DEAD ML MGFI I+ + P Q Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEWVLEHKPADSQLA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L NP I + + +T E+I+ +V +Q++K AL++ +L+ Sbjct: 184 LFSATMPEQIKRVAAKHLSNPVNISIASSQTTVESIDQRYVQV-SQHNKLEALVR-VLEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 242 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P +E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTIE 360 Query: 362 KLIEKKV 368 + ++ Sbjct: 361 RATNSRI 367 >gi|311030272|ref|ZP_07708362.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13] Length = 510 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 222/371 (59%), Gaps = 7/371 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LG+ V ++ G PTPIQ +TIP VL+ HDV AQTGTGKT +FVLP Sbjct: 3 DFLKLGIRKGVNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ILEK + LIL PTRELA Q+ + +N + L V + GG +Q KKL+ Sbjct: 60 ILEKVDVNNPETQALILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR+LDH RG + ++ I +LVIDEAD+ML MGF+P I IT+ + +RQT Sbjct: 120 GAQHVIVATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ +E+ +++ +++ PK I++ T +I H V T + +K + L++ Sbjct: 180 MLFSATIPNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDR--RKEGTMLHLIK 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K V L L+ +G A+HG+I Q R + + F+E +Q +V Sbjct: 238 EHNPYL-AIIFCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV+N+D+P E YIHR GRTGRA G+A+TL A D+ + I Sbjct: 297 ATDVAARGLDVEGVTHVYNYDIPQDLETYIHRTGRTGRASGSGEAYTLFAPRDVDFLQMI 356 Query: 361 EKLIEKKVDWL 371 EK IE ++ L Sbjct: 357 EKGIEMPLEKL 367 >gi|261758239|ref|ZP_06001948.1| ATP-dependent RNA helicase [Brucella sp. F5/99] gi|261738223|gb|EEY26219.1| ATP-dependent RNA helicase [Brucella sp. F5/99] Length = 462 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 228/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 76 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 135 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 136 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 195 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I + ++ LL +L Sbjct: 196 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRR--LLSAMLT 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 254 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 312 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P HV N+D P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 313 ATDIAARGIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 371 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 372 AVERVTRSKLSIKDAPVKLAPAPVAK 397 >gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245] gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245] Length = 610 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 235/375 (62%), Gaps = 11/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F++L L+ ++ A+ + GY KPTPIQ +TIPL+L+ DV G AQTGTGKTA+F LP+L Sbjct: 24 LNFSNLELAEPLLRALEEVGYEKPTPIQAQTIPLLLEGRDVLGQAQTGTGKTAAFALPVL 83 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNK 117 + +L K P+ L+L PTRELA QVA+ F +Y + V + GG + Q + Sbjct: 84 SNIVLSKTE-----PQALVLTPTRELAIQVAEAFHRYAEYLKGFHVVPIYGGQDYGTQLR 138 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+RG V++ TPGR++DH RG L +++++ LV+DEAD ML MGFI ++ I P + Sbjct: 139 MLKRGVHVVVGTPGRVMDHMRRGSLSLSSLQCLVLDEADEMLRMGFIDDVEWILDQTPES 198 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LFSATM ++++++ L++P + + ++T ETI + S K +L + Sbjct: 199 RQVALFSATMPAPIRRIAQKHLKSPAEVIIQNKTTTVETIRQRYWIVGG--SHKLDVLTR 256 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ + +IF K + L L+ +G++ A++G++ Q R + + K+G++ Sbjct: 257 ILEFE-PFDGILIFVRTKTMTLELAEKLQARGYAASALNGDMAQNQRERTVDQLKDGSLS 315 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G+A V+ + + Sbjct: 316 IVIATDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNML 375 Query: 358 DAIEKLIEKKVDWLN 372 AIEK K+++ + Sbjct: 376 YAIEKATRKRIELME 390 >gi|87125801|ref|ZP_01081644.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9917] gi|86166610|gb|EAQ67874.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9917] Length = 396 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/325 (45%), Positives = 206/325 (63%), Gaps = 4/325 (1%) Query: 40 DVCGIAQTGTGKTASFVLPMLTILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKN 98 DV AQTGTGKTA F LPML L G RA R R L+L PTRELAAQV DN +Y + Sbjct: 6 DVMAAAQTGTGKTAGFTLPMLERLCHGARAGRRQIRALVLTPTRELAAQVLDNVRQYSCH 65 Query: 99 YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++ GG+ Q ++L +G DVL+ TPGR+LD +G + +E LV+DEADRM Sbjct: 66 LPLRSEVVFGGVKINPQIQRLAQGVDVLVATPGRLLDLHQQGAVRFEAVECLVLDEADRM 125 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218 LDMGFI I+ + S +P RQTLLFSAT + ++K+++ L +P +I+V + TA ++E Sbjct: 126 LDMGFIHDIRRLLSRLPERRQTLLFSATFSAPIRKLAQGMLHHPLQIQVAPANQTARSVE 185 Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278 +K ALL L++S+D + ++F K + L ++G AIHGN Sbjct: 186 QTV--HPCDMGRKAALLTHLIRSED-WQQVLVFSRTKHGANKVADQLNQEGLVAAAIHGN 242 Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338 Q +R + L FK+G+++++VA+D+AARG+DI + HV N D+PN AE+Y+HRIGRTGR Sbjct: 243 KSQGARTRALQGFKDGSVRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGR 302 Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKL 363 AG G A +LVA E+ + AIE+L Sbjct: 303 AGESGHAISLVAAEEALLLKAIERL 327 >gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis BC7] Length = 581 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 229/368 (62%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGL+ ++ A+ +GY PTPIQ K IP L D+ AQTG+GKTA+FVLP+L Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + + LIL PTRELA QV D+ +YG N+ L+GG P+ Q + L++ Sbjct: 80 MSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK 139 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH G++ ++ +++L++DEADRMLDMGF I+ I P TRQT+ Sbjct: 140 GVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTV 199 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240 + SAT + K++E+F NP+++ + S+ E++ +C ++ K +L Q+L Sbjct: 200 MSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYC-----DDFNHKNNILLQVLN 254 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +K +IF K + L L + GF +HG++ Q R +I+S+ K G ++V Sbjct: 255 NP-KIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV N+D+P + E+Y+HRIGR GRAGR G A L + +D + ++ I Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373 Query: 361 EKLIEKKV 368 + +++++ Sbjct: 374 NRYLKRQM 381 >gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora maris AB-18-032] gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora maris AB-18-032] Length = 566 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 214/367 (58%), Gaps = 3/367 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL +++ A+ GY +PTPIQ + I +L D+ G A TGTGKTA+F LP+L Sbjct: 17 FADLGLRSELLAALSALGYEEPTPIQREAIGPLLAGRDLLGQAATGTGKTAAFALPLLQR 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + R P L+L PTRELA QV++ F +YGK+ V + GG P Q + L+ G Sbjct: 77 MPDERP-TGDPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDNG 135 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH RG L + N+ +V+DEAD MLDMGF I+ I P RQT+L Sbjct: 136 VDVVVATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQTVL 195 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSATM + ++ L +P RI + A + Y + K A L ++L Sbjct: 196 FSATMPSRIDGMARAHLTDPVRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDV 255 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+FC ++ V L ++ +G+ A+HG + Q R +++ + GT L+VA Sbjct: 256 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRGGTADLLVA 314 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+DVP+ E+Y+HRIGR GRAGR G A TL + + + IE Sbjct: 315 TDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIE 374 Query: 362 KLIEKKV 368 ++ +++ Sbjct: 375 RVTGQRI 381 >gi|319407442|emb|CBI81093.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C] Length = 415 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 226/370 (61%), Gaps = 8/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGLS +V + AG KP IQ K IP++L+ HD+ GIAQTG+GKT +F LP+L Sbjct: 9 FTELGLSSILVKNLFSAGMNKPKFIQEKAIPVMLKGHDILGIAQTGSGKTLAFSLPILNR 68 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G R + R LIL PTRELA Q+ + K +L+ L++GG+ Q +++ Sbjct: 69 ILTLGDKRYPKTARALILVPTRELAIQIEEAISAIAKGTHLSTCLIVGGMSRLTQIRRMA 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+LI T GR++D + ++ ++DEADRMLDMGFI ++ I + QT Sbjct: 129 KGVDILIATTGRLMDLIRSKYVDLSQSRFFILDEADRMLDMGFINDVRQIARFLNEKCQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM+ E+ +++N L+ P +IEV + +TA I S+K ++L +LL Sbjct: 189 ALFSATMSKEVNVLADNLLRKPVKIEVVSQGTTAAEITQVLYCV--STSEKKSILSKLL- 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + I+F K ++ SL K G+SV IHGN Q +R L NF+EG ++++V Sbjct: 246 TNPALTSVIVFIRTKHGADSVARSLTKAGYSVATIHGNKSQNARQCALKNFREGLVRVLV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID-- 358 A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G G A T E I+ + Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGDAITFF-DEKIEQVRLC 364 Query: 359 AIEKLIEKKV 368 AIE+LI K+ Sbjct: 365 AIERLIRMKL 374 >gi|222034881|emb|CAP77624.1| Cold-shock DEad box protein A [Escherichia coli LF82] Length = 645 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 24 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 84 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 140 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 141 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 200 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 201 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 258 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 259 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 317 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 318 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 377 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 378 RTMKLTIPEVELPNAEL 394 >gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2] gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp. SB155-2] Length = 471 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 151/363 (41%), Positives = 224/363 (61%), Gaps = 11/363 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+D L P+++ A+ AG+ +P+PIQ + IP+VL D+ G A TGTGKTA+F LP+L Sbjct: 1 MTFSDFNLKPQIMKAIEQAGFKEPSPIQKEAIPVVLAGKDMVGQAHTGTGKTAAFALPLL 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +LE G L++ PTRELA QV+D + GK + A + GG + Q + Sbjct: 61 NMLELDGEVE-----ALVIVPTRELATQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHI 115 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 A V++ TPGR+LD GK+ +N + +V+DEAD MLDMGF+ I+ I + +P RQ Sbjct: 116 ANAA-VVVATPGRLLDLLKSGKIELNP-KFVVLDEADEMLDMGFLDDIKAIFNYLPTNRQ 173 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++++++ L +P+ I + T I+ F ++ + AL++ LL Sbjct: 174 TLLFSATMPQAIKELAQQILHSPEFISITKKEVTNVNIKQ-FYYVVDEHERDEALIR-LL 231 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ K+ IIFC K V L LE QG+S +HG++ QR R + + FK G I+++ Sbjct: 232 DYKNPTKS-IIFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEIL 290 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLDI DV HVFN+ +P E+Y+HRIGRTGRAG+ G A +LV + K + Sbjct: 291 IATDVAARGLDISDVSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEFKQLLR 350 Query: 360 IEK 362 I+K Sbjct: 351 IQK 353 >gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa] gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa] Length = 726 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 224/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G +++ VL AG+ PTPIQ ++ P+ LQ D+ +A+TG+GKT +++P Sbjct: 156 FEATGFPSEILKEVLKAGFSSPTPIQAQSWPVALQSRDIVAVAKTGSGKTLGYLIPGFIH 215 Query: 63 LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L++ R ++ P L+L PTRELA Q+ D K+GK+ ++ L GG P Q K+L+R Sbjct: 216 LKRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKELDR 275 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GAD+++ TPGR+ D ++ +N ++ LV+DEADRMLDMGF P I+ I VP RQTL Sbjct: 276 GADIVVATPGRLNDILEMRRVSLNQVKYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 335 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQL 238 +++AT E++K++ + L NP ++ + + E + + + + + +K L+Q+ Sbjct: 336 MYTATWPKEVRKIAADLLVNPVQVNIG---NIDELVANKSITQHVELLAPLEKHRRLEQI 392 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+SQ+ IIFC+ KK L +L +Q F AIHG+ Q R +LS F+ G + Sbjct: 393 LRSQEPGSKIIIFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDHVLSQFRTGRSPI 451 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T +D K+ Sbjct: 452 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYAS 511 Query: 359 AIEKLIE 365 + K++E Sbjct: 512 DLIKVLE 518 >gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25] gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25] Length = 644 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ IP +L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ ++L PTRELA QVA + GKN L V + GG Q + L Sbjct: 66 NKIDLNQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA V++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+K+ E FL+ P ++V + T + ++ F +K + +LL Sbjct: 183 RVLFSATMPPMLKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11] gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11] Length = 640 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L ++ A+ D G+V PTPIQ +IPL+L+ D G AQTGTGKTA+F LP+L Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 K + P+ +I+ PTRELA QVA + G+N L V + GG Q + L Sbjct: 67 ---KINLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALS 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D NR +L + + ++DEAD ML MGF+ + I P T Q Sbjct: 124 RGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQR 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++ + + +L++P R++V + T + +E F +K + +LL+ Sbjct: 184 ILFSATMPPMVKTIVDRYLRDPARVDVAGTNHTVDKVEQNFWVVKG--VEKDEAMSRLLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T I+F +++ L L +GF A+HG+I Q R + + N K G I ++V Sbjct: 242 TEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV ++ + I Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTI 360 Query: 361 EKLIEKKVD 369 E++ + ++ Sbjct: 361 ERVTKSTME 369 >gi|315634792|ref|ZP_07890074.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393] gi|315476344|gb|EFU67094.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393] Length = 600 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 232/373 (62%), Gaps = 13/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL ++ AV D G+ P+PIQ IP +L+ DV G+AQTG+GKTA+F LP+L Sbjct: 6 MTFKDLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPIL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 ++ + P+ L++ PTRELA QVAD F KY K N+ L GG ++ Q + Sbjct: 66 AQIDPTE---KHPQLLVMAPTRELAIQVADACEQFVKYAKGINIVT--LYGGQRYDIQLR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++GA V++ TPGRILDH RG L + ++ +V+DEAD ML MGFI ++ + + +P Sbjct: 121 ALKQGAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEH 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QT LFSATM + ++++++ F+++P+ +++ +A I + C+ Y +K L Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCW---YVHGVRKNDALL 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L+ +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ Sbjct: 238 RFLEVED-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + Sbjct: 297 DIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRL 356 Query: 357 IDAIEKLIEKKVD 369 + +E LI+K ++ Sbjct: 357 LRNVEHLIKKNIE 369 >gi|254706759|ref|ZP_05168587.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] Length = 535 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 229/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P HV N+D+P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGSSHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus SK60] gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus SK60] Length = 777 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 231/384 (60%), Gaps = 22/384 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS ++ +++ GY PTPIQ + IP L+ D+ AQTG+GKTA+FVLP+L Sbjct: 71 FTALGLSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQ 130 Query: 63 L----------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVAL 105 L ++GR + ++ + LIL PTRELA QV D+ KYG +L Sbjct: 131 LSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVP 190 Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165 L+GG + Q + L++G +++ TPGR+LDH N ++ ++++ +LV+DEADRMLDMGF Sbjct: 191 LVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFAD 250 Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225 I I P RQT++ SAT + K++E+F ++P+RI + TA E + Sbjct: 251 DINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIKV--ETAHIDEKVYFCD- 307 Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 + K LL+QL+ + + IIF K++ + L++ C +HG++ Q R Sbjct: 308 -NFDHKNKLLEQLICDPERGQ-AIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRN 365 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 +I+S+ + G ++VA+D+AARGLD+P++ HVFN+D+P + E+Y+HRIGR+GRAGR G A Sbjct: 366 RIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIA 425 Query: 346 FTLVAKEDIKHIDAIEKLIEKKVD 369 L +++D + I + +++ ++ Sbjct: 426 INLCSRDDRRQFGNIARYLKRDIN 449 >gi|78224228|ref|YP_385975.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15] gi|78195483|gb|ABB33250.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15] Length = 438 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 154/381 (40%), Positives = 220/381 (57%), Gaps = 9/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L V + D G+ TPIQ KT+PL L DV G AQTGTGKTA+F++ + Sbjct: 1 MKFTDLNLPELVQRGIADTGFTDCTPIQEKTLPLALSGKDVAGQAQTGTGKTAAFLISLF 60 Query: 61 TILEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 T L K R PR LIL PTREL Q+ + + G + + + GG+ + Q Sbjct: 61 TRLLKNPTEGETRNPRALILAPTRELVVQIEKDAQALGAHCGFVIQAIYGGVDYMKQRSA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPF- 176 L+ GADV++ TPGR++D+ + + IE+LVIDEADRM DMGFI ++ I L PF Sbjct: 121 LKEGADVVVGTPGRLIDYLKQKVYSLKEIEVLVIDEADRMFDMGFIADLRFILRRLPPFD 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ L+FSAT+ + +++ F+ P+++ V TAE +E Y K+ L Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVL---YHVGRKEKFPLL 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L + M+ +IF N K+ L L F I G+++QR RM+IL +FK G + Sbjct: 238 LGLLRKKGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRMRILEDFKNGKL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +M+A+D+A+RGL I V HV N+D+P AE+Y+HRIGRT RAG GKA ++ ++ H Sbjct: 298 PIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFH 357 Query: 357 IDAIEKLIEKK--VDWLNGDL 375 ++AI + I+ K V+W DL Sbjct: 358 LEAIHEYIKDKIPVEWAEDDL 378 >gi|325577637|ref|ZP_08147912.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC 33392] gi|325160382|gb|EGC72508.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC 33392] Length = 612 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 233/371 (62%), Gaps = 13/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L+ DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPLLAK 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++ + P+ L++ PTRELA QVAD +F KY K N+ L GG ++ Q + L Sbjct: 67 IDPA---AKHPQLLVMAPTRELAIQVADACEHFMKYAKGINIVT--LYGGQRYDIQLRAL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++GA V++ TPGRILDH +R L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 122 KQGAQVVVGTPGRILDHIHRNTLNLSELKAIVLDEADEMLRMGFIDDVETVMAELPEEHQ 181 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQL 238 T LFSATM + ++++++ F+ NP+ +++ + A IE C+ Y Q +K L + Sbjct: 182 TALFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCW---YVQGFRKNEALLRF 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++ IIF K +++ LEK GF A++G++ Q+ R + L + G++ + Sbjct: 239 LEVEE-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 298 VVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLR 357 Query: 359 AIEKLIEKKVD 369 IE L++K ++ Sbjct: 358 NIEHLMKKPIN 368 >gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 544 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/372 (38%), Positives = 227/372 (61%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DL LS +V+ A+ D G+ P+ +Q TIPL+L+ DV AQTGTGKTASF +PM+ Sbjct: 1 MRFSDLNLSKEVLQAIDDMGFESPSEVQEATIPLILEGRDVLAQAQTGTGKTASFGIPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 +E ++ L+L PTRELA QV+D +K K +++ + GG Q + L Sbjct: 61 EGIEDKSHNLQ---GLVLVPTRELARQVSDELKKLAKYKKFISIVPIYGGADMGKQLRDL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++GAD+++ TPGR++DH R +++++++ L +DEAD M DMGF ++ I RQ Sbjct: 118 KKGADIVVGTPGRVMDHMKRKTIVLDDLKFLTLDEADEMFDMGFRDDMKTIIEKTNPDRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSAT +++++ S + +P ++ + TAE IE ++ + K +L +L+ Sbjct: 178 TLFFSATFDNDIKEFSRLYQVDPAKVIIEKKELTAEKIEQFYLEL--NRNMKTEILNRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 K IIFCN K+ V L + ++G+ V ++HG++ Q SR ++ F+ GTI ++ Sbjct: 236 LIHKP-KKSIIFCNTKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ D+ VFN+D+P +AE Y+HRIGRT RAG+ G +FT V D Sbjct: 295 IATDVAARGLDVSDIDLVFNYDLPQQAEYYVHRIGRTARAGKKGASFTFVTSRDYPKFKE 354 Query: 360 IEKLIEKKVDWL 371 IEK K++ + Sbjct: 355 IEKYANTKMEKM 366 >gi|195977782|ref|YP_002123026.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 538 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 227/371 (61%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 N---KIRTADNTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGR+LD R L ++++E L++DEAD ML+MGF+ I+ I S VP RQT Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ ++V T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F K+ V + L+ +GF IHG++DQ R++++ +FK + ++V Sbjct: 236 VQQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 EHLTKKRMKPL 365 >gi|293376735|ref|ZP_06622957.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909] gi|325845681|ref|ZP_08168964.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1] gi|292644601|gb|EFF62689.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909] gi|325488282|gb|EGC90708.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1] Length = 479 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 225/362 (62%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS ++ ++ GY T +Q IP VL + D+ ++TG+GKTA+F +P+ + Sbjct: 4 FNELQLSESILKSLTGLGYEHATEVQASVIPTVLNKQDLIVQSKTGSGKTAAFGIPICEM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ + P+ LIL PTRELA Q+ + G+ + V + G PF+ Q ++L++ Sbjct: 64 LDWDENK---PQALILTPTRELALQIKEEISNIGRFKRIKVTAVYGKSPFKEQARELKQK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+ DH RG L ++ + + V+DEAD ML MGFI ++NI + P RQT+L Sbjct: 121 THIVVGTPGRVQDHLERGTLSLDKLSLFVLDEADEMLKMGFIEVVENIMNEAPRKRQTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM D ++K+S+++L +P+ I++ +P+ T + +EH Q +K LLQ LL + Sbjct: 181 FSATMPDRIKKLSQHYLTHPQEIKIESPTLTTDLVEHALYEVREQ--EKVKLLQDLLMVE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + +IFC+ K+ V L +L ++G+ + +HG +DQ+ R + + NFK G +V++ Sbjct: 239 NP-ERCMIFCSTKEAVDALYRNLSQKGYPIERLHGGLDQKERFETMKNFKIGRFAYLVST 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+D+ V HV N+D+P ++++HRIGR GRAG+ GKA T + D + ++ I+ Sbjct: 298 DVAARGIDVSGVSHVINYDLPPEKDSFVHRIGRAGRAGQKGKAITFATRFDQRWLEEIQA 357 Query: 363 LI 364 I Sbjct: 358 YI 359 >gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii B565] gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565] Length = 633 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 150/393 (38%), Positives = 236/393 (60%), Gaps = 15/393 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL+ V+ A+ D GY +P+PIQ IP ++ HD+ G AQTGTGKTA+F LP+L+ Sbjct: 10 FSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE G R + L+L PTRELA QVA+ ++Y + + V + GG +E Q + L R Sbjct: 70 LEAGN---RNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D R L ++ ++ LV+DEAD ML MGFI + I P TRQ Sbjct: 127 GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V++ L+ PK I++ + ++TA TI + + K + +LL+ Sbjct: 187 LFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLH--KLDAMTRLLEV 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + + ++F K L L +G + A+HG+I Q+ R + + ++G + +++A Sbjct: 245 E-SYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A VA + + + AIE Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 + ++ + P E DI QH A+ Sbjct: 364 HATRQAIEPMK------MPSTE--DINQHRLAK 388 >gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 12P80B1] Length = 581 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 228/368 (61%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGL+ ++ A+ +GY PTPIQ K IP L D+ AQTG+GKTA+FVLP+L Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + + LIL PTRELA QV D+ +YG N+ L+GG P+ Q + L++ Sbjct: 80 MSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK 139 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH G++ ++ +++L++DEADRMLDMGF I+ I P TRQT+ Sbjct: 140 GVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTV 199 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240 + SAT + K++E F NP+++ + S+ E++ +C ++ K +L Q+L Sbjct: 200 MSSATWDGAVGKIAERFTVNPEKVSIKVESAHIDESVYYC-----DDFNHKNNILLQVLN 254 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +K +IF K + L L + GF +HG++ Q R +I+S+ K G ++V Sbjct: 255 NP-KIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV N+D+P + E+Y+HRIGR GRAGR G A L + +D + ++ I Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHI 373 Query: 361 EKLIEKKV 368 + +++++ Sbjct: 374 NRYLKRQM 381 >gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110] gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110] Length = 478 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 225/369 (60%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS + + G+ PT IQ K IPL+L+ HDV G +QTGTGKTA++ LP+L Sbjct: 3 ISFENLGLSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LIL PTRELA QVA+ + + L + + GG E Q + LE Sbjct: 63 EQIDTRNSNVQ---ALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLE 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D R KL+++++ V+DEAD ML MGFI ++ I P R T Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDARNT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM E++ + FL++P + V + I+ +SK+ AL Q +L+ Sbjct: 180 ACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKAL-QPILE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D ++ IIF K+ +L L++ G SV HGN+ Q R +++ F++G I+L+V Sbjct: 239 IEDP-ESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ ++ HV N+D+P+ +E YIHRIGRTGRAG+ G A +L+ D + + I Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPIDRRMVRQI 357 Query: 361 EKLIEKKVD 369 EK + +K++ Sbjct: 358 EKRLRQKLE 366 >gi|311032981|ref|ZP_07711071.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13] Length = 375 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 222/371 (59%), Gaps = 7/371 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LG+ V ++ G PTPIQ +TIP VL+ HDV AQTGTGKT +FVLP Sbjct: 3 DFLKLGIRKGVNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ILEK + LIL PTRELA Q+ + +N + L V + GG +Q KKL+ Sbjct: 60 ILEKVDVNNPETQALILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR+LDH RG + ++ I +LVIDEAD+ML MGF+P I IT+ + +RQT Sbjct: 120 GAQHVIVATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ +E+ +++ +++ PK I++ T +I H V T + +K + L++ Sbjct: 180 MLFSATIPNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDR--RKEGTMLHLIK 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K V L L+ +G A+HG+I Q R + + F+E +Q +V Sbjct: 238 EHNPYL-AIIFCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HV+N+D+P E YIHR GRTGRA G+A+TL A D+ + I Sbjct: 297 ATDVAARGLDVEGVTHVYNYDIPQDLETYIHRTGRTGRASGSGEAYTLFAPRDVDFLQMI 356 Query: 361 EKLIEKKVDWL 371 EK IE ++ L Sbjct: 357 EKGIEMPLEKL 367 >gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp. MWYL1] gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1] Length = 632 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 150/373 (40%), Positives = 226/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL V+ AV D GY +P+ IQ ++IP +L+ D+ G AQTGTGKTA+F LP+L+ Sbjct: 10 FDSLGLIAPVLKAVADLGYEQPSAIQAQSIPYLLEGRDLLGQAQTGTGKTAAFALPLLSR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ ++ L+L PTRELA QV++ F+ Y +N + V + GG+ ++ Q ++L+R Sbjct: 70 IDVTDKTTQL---LVLAPTRELAIQVSEAFQSYARNLPDFHVLPIYGGMSYDTQLRQLKR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH R L ++ I+ LV+DEAD ML MGFI ++ I P TRQ Sbjct: 127 GVQVVVGTPGRVMDHIRRKTLKLDGIKALVLDEADEMLRMGFIDDVEWILEQTPPTRQIA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ- 240 LFSATM +++V+ L NPK +++ T +STA TI + + K L ++L+ Sbjct: 187 LFSATMPAVIRQVANRHLNNPKEVKIVTKTSTAMTITQKYWPVSGLH--KLDALTRILEM 244 Query: 241 -SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D M IIF K V L L +G + A++G+I Q R + + K+G I ++ Sbjct: 245 NEHDGM---IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDIL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+ V HV N+D+P E+Y+HRIGRTGRAGR G A VA + + + A Sbjct: 302 VATDVVARGLDVERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQA 361 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 362 IERATRQPIESMT 374 >gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus amyloliquefaciens LL3] Length = 480 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/352 (41%), Positives = 218/352 (61%), Gaps = 6/352 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +TIPL L DV G AQTGTGKTA+F +P++ EK + +++ Sbjct: 8 GFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV---EKMNPESPNIQAIVIA 64 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QV++ K G++ V + GG Q + L++ +++ TPGR+LDH NR Sbjct: 65 PTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINR 124 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 + +NN+ +V+DEAD ML+MGFI I++I S VP QTLLFSATM +++++E F+ Sbjct: 125 RTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFM 184 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 P+ ++V T I+ ++ Q KK L +LL Q + + I+F K+ V Sbjct: 185 TEPEHVKVKAKEMTVSNIQQFYLE--VQERKKFDTLTRLLDIQ-SPELAIVFGRTKRRVD 241 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 L +L +G++ IHG++ Q RM L FKEG I+++VA+D+AARGLDI V HV+N Sbjct: 242 ELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYN 301 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371 FDVP E+Y+HRIGRTGRAG+ G A T + + + AIE+ ++K+D + Sbjct: 302 FDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRM 353 >gi|333030556|ref|ZP_08458617.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] gi|332741153|gb|EGJ71635.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] Length = 378 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 150/379 (39%), Positives = 229/379 (60%), Gaps = 11/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + ++ A+ + GY PTPIQ + I + D+ G+AQTGTGKTA+F +P++ Sbjct: 1 MTFKELNIIEPILQALTEKGYSTPTPIQEQAILPAIDHQDILGLAQTGTGKTAAFSIPII 60 Query: 61 ------TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 ++ ++G ++ R R LIL PTRELA Q+ ++ + Y + +L ++ GG+ Sbjct: 61 QHLHLDSLQKEGEEKIAKRAIRALILTPTRELAIQIGESLKDYTRYTDLQYTVIFGGVKQ 120 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 +Q +L+ G D+L+ TPGR+LD ++G + +N ++ V+DEADRMLDMGFI I+ + Sbjct: 121 GSQVNRLKAGVDILVATPGRLLDLMHQGHIKINKVQHFVLDEADRMLDMGFIHDIKRLLP 180 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 +P RQTL FSATM + +S + L+NP RIEV SS +TIE + + + K Sbjct: 181 RLPKNRQTLFFSATMPRSIASLSRSILKNPIRIEVTPASSVVDTIEQEVY--FVEQNDKK 238 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +LL D MK+ ++F K + ++ K G + IHGN Q +R + L NFK Sbjct: 239 DLLVKLLHEGD-MKSVLVFSRTKHGANKIVKAITKAGITSEPIHGNKSQNARQRALENFK 297 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 +++VA+D+AARG+DI ++ V N+D+PN E Y+HRIGRTGRAG GKA T A Sbjct: 298 AHKTRVLVATDIAARGIDIENLELVVNYDLPNIPETYVHRIGRTGRAGNVGKALTFCAAS 357 Query: 353 DIKHIDAIEKLIEKKVDWL 371 + + IEKL + K+ + Sbjct: 358 ERIFLKDIEKLTKNKLSIV 376 >gi|258621511|ref|ZP_05716544.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573] gi|258586129|gb|EEW10845.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573] Length = 412 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 152/373 (40%), Positives = 221/373 (59%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS + V GY PT IQ + IP++LQ D+ AQTGTGKTASFVLP+L Sbjct: 15 MPFSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPVL 74 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVA+ E+YG++ L + GG+ +AQ ++L Sbjct: 75 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGQDTGLKSLAVFGGVDEQAQKQRL 134 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR++D + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 135 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 194 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +++++++ + +P I + ++ I + K ALL L+ Sbjct: 195 FLLFSATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITV--DKDTKSALLSHLI 252 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 253 NEQQ-WDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYL 311 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A + V+K++ K++ Sbjct: 312 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCM 371 Query: 360 IEK----LIEKKV 368 IE LIE++V Sbjct: 372 IESRLGHLIERRV 384 >gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684] gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM 14684] Length = 481 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/360 (40%), Positives = 218/360 (60%), Gaps = 6/360 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGLS V+ A+ D GY P+PIQ + IP +L +D+ G AQTG+GKTA+F LP++ Sbjct: 4 FADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLMEY 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ V+ L+L PTREL QV YG + V + GG P +Q +L G Sbjct: 64 VDPSDRDVQ---ALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQLRAG 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ T GR+ D +R L+++ +V+DEAD MLD+GF+ ++ I +L P +RQT L Sbjct: 121 GQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQTAL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++K+SE +L NP ++V + T +T+E F +Q K +L +L+S+ Sbjct: 181 FSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQ-FSLEMSQRDKP-DMLGTVLESE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 I+F K L +L +G +V A+HG++ Q R ++ +FK G + ++VA+ Sbjct: 239 KP-DQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HV NFDVP + Y+HRIGRTGR GR G+A T + + I+AIE+ Sbjct: 298 DVAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIER 357 >gi|167752757|ref|ZP_02424884.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216] gi|167659826|gb|EDS03956.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216] Length = 393 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 155/389 (39%), Positives = 226/389 (58%), Gaps = 24/389 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L ++ ++ A+ + GY+ PTPIQ K IP+ L D+ GIAQTGTGKTA+F +P+L Sbjct: 3 MTFNELKITDPILKAIGEKGYLAPTPIQQKGIPVALDGRDMLGIAQTGTGKTAAFAIPIL 62 Query: 61 TILEKG--------------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN 100 L G VR R LIL PTRELA Q+ D+F YGK Sbjct: 63 QHLSSGMQAEPTDVPRRNRRGRNHGREYGVRPIRALILTPTRELAVQIGDSFSDYGKYVG 122 Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 L + GG+ Q + L G D+LI TPGR+ D + + ++ I V+DEADRMLD Sbjct: 123 LKHLTIFGGVKQGPQVEALRGGVDILIATPGRLHDLIGQRFVELDAITHFVLDEADRMLD 182 Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 MGF+ I+ + L+P +RQTL FSATM ++ +S++ L +P R+EV +S + I+ Sbjct: 183 MGFVADIKRLLPLLPKSRQTLFFSATMPADIVALSKSMLTDPVRVEVTPVASAVDAIDQR 242 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + + +K LL LL+ +D K+ ++F K N+ L K G AIHGN Sbjct: 243 VY--FVEKPEKKKLLVSLLREED--KSVLVFSRTKHGADNISRLLSKSGIRSEAIHGNKS 298 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R ++L++FK G I++MVA+D+AARG+DI ++ V N+D+P+ E Y+HRIGRTGRAG Sbjct: 299 QNHRQRVLTDFKSGKIRVMVATDIAARGIDIRELEIVINYDLPDVPETYVHRIGRTGRAG 358 Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 G A T ++ + I++L KK++ Sbjct: 359 HSGTALTFCTPDERPLMKDIQRLTGKKLN 387 >gi|120602237|ref|YP_966637.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562466|gb|ABM28210.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4] Length = 462 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/365 (40%), Positives = 214/365 (58%), Gaps = 8/365 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADL LSP+++ A+ GY +PTP+Q IP L DV +A TGTGKTA+FVLPML Sbjct: 1 MTFADLSLSPRLLAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPML 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R VR L++ PTRELA Q D+ + G L + GG+ AQ +L Sbjct: 61 QRLMDGPRGAVR---ALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G +V++ PGR+LDH RG L ++++E+LV+DE D + D+GF+ ++ + +VP T Q Sbjct: 118 RAGVEVVVGCPGRLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPTTCQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM D ++ ++ L+ P ++V+ A T+ H A + LL+ L Sbjct: 178 RMLFSATMPDAVRVLAAEALRQPVTVQVDA-VQPASTVHHALYPVPAHL--RTPLLKTFL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +S + ++F + L L+ GFSV + G + QR R+ L F++G ++ Sbjct: 235 RSGPE-GSVVVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV N+DVP+ A+ YIHR+GRTGRA R+G A T V D + Sbjct: 294 VATDVAARGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPADEAQVRN 353 Query: 360 IEKLI 364 IE+ + Sbjct: 354 IERAL 358 >gi|127512812|ref|YP_001094009.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126638107|gb|ABO23750.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 488 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 220/366 (60%), Gaps = 4/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+LGL V+ + GY +PTPIQ + IPL L+ ++ AQTG+GKTA+FVLPML Sbjct: 1 MTFANLGLPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPML 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 T L +G+ R + R +IL PTREL QV D +YGK L + GG+ +AQ ++L Sbjct: 61 TTLMQGQTQRKKRARAIILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR+ D + + + + +E+LV+DEADRMLDMGFI I I +P RQ Sbjct: 121 IEGVDIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLPEERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ ++++++ + + V + IE T KK ALL QL+ Sbjct: 181 NLLFSATLSRPVRELAKQAVPKAIHLSVTKNQDSQPDIEQWI--TTVDKDKKSALLSQLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + +IF K L LEK+G IH Q R +IL++FK G I + Sbjct: 239 KD-NAWPQALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++ ++ARG+DI ++ V N+D+P A+ Y+HRIGRTGRAG G+A +LV+K+D K++ Sbjct: 298 ISTGISARGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCM 357 Query: 360 IEKLIE 365 IE ++ Sbjct: 358 IESRLD 363 >gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 611 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 143/367 (38%), Positives = 228/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY PTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ L+L PTRELA QVA+ F Y K+ V + GG Q L+R Sbjct: 68 VD---MKINAPQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMHQQLSALKR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L +++++ LV+DEAD ML MGFI I+ + P Q Sbjct: 125 GPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPKDSQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L NP I + ++T E+I+ FV +Q++K AL++ +L+ Sbjct: 185 LFSATMPEQIKRVAAKHLTNPVNISIAASTTTVESIDQRFVQV-SQHNKLEALVR-VLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 243 ENT-EGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 361 Query: 362 KLIEKKV 368 + ++ Sbjct: 362 RATNSRI 368 >gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa] gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa] Length = 791 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 222/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G +++ VL+AG+ PTPIQ ++ P+ LQ D+ +A+TG+GKT +++P Sbjct: 167 FETTGFPSEILKEVLNAGFSAPTPIQAQSWPIALQSRDIVAVAKTGSGKTLGYLIPGFIH 226 Query: 63 LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L++ R+ P L+L PTRELA Q+ K+GK+ + L GG P Q K+L+R Sbjct: 227 LKRSCNDPRLGPTVLVLSPTRELATQIQVEAVKFGKSSRFSCTCLYGGAPKGPQLKELDR 286 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GAD+++ TPGR+ D ++ ++ + LV+DEADRMLDMGF P I+ I VP RQTL Sbjct: 287 GADIVVATPGRLNDILEMRRVSLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 346 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQL 238 +++AT E++K++ + L NP ++ + + E + + + Y + +K L+Q+ Sbjct: 347 MYTATWPKEVRKIAADLLVNPVQVNIG---NVDELVANKSITQYVELLAPLEKHRRLEQI 403 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+SQ++ IIFC+ KK L +L +Q F AIHG+ Q R +LS F+ G + Sbjct: 404 LRSQESGSKIIIFCSTKKMCDQLSRNLTRQ-FGAAAIHGDKSQSERDYVLSQFRTGRSPI 462 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T +D KH Sbjct: 463 LVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKHAS 522 Query: 359 AIEKLIE 365 + K++E Sbjct: 523 DLIKVLE 529 >gi|260913800|ref|ZP_05920275.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325] gi|260632113|gb|EEX50289.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325] Length = 610 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 232/370 (62%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 8 FNDLGLPEFLLDAVSDLGFETPSPIQQTCIPYLLDGNDVLGMAQTGSGKTAAFSLPLLAQ 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++ + + P+ L++ PTRELA QVAD F KY KN + L GG ++ Q + L Sbjct: 68 IDLDK---KYPQMLVMAPTRELAIQVADACEQFCKYAKNTRIVT--LYGGQRYDIQLRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++GA V++ TPGRILDH RG L ++N+ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 123 KQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEEHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238 T LFSATM + ++++++ F+++PK I++ + +T I + C+ Y +K L + Sbjct: 183 TALFSATMPEPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCW---YVHGFRKNDALLRF 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++ IIF K +++ LEK GF A++G++ Q+ R + L + G++ + Sbjct: 240 LEVEN-FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLERLRNGSLDI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 299 LVATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLR 358 Query: 359 AIEKLIEKKV 368 IE L +K + Sbjct: 359 NIEHLTKKPI 368 >gi|167921338|ref|ZP_02508429.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BCC215] Length = 465 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 154/393 (39%), Positives = 225/393 (57%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PKR+++ ++ + + T + LL + Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF V A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E Y+HRIGRTGRA + G A +L + ++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362 Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387 + + ++V+W GD + L PP+E + I Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394 >gi|330997890|ref|ZP_08321724.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841] gi|329569494|gb|EGG51264.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841] Length = 483 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 152/425 (35%), Positives = 246/425 (57%), Gaps = 25/425 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF DL LS +V+ A+ D + + TPIQ IP++L+ D+ G+AQTGTGKTA+F+LP+L Sbjct: 1 MDFYDLDLSDQVLDALDDMNFTECTPIQEHAIPVILEGRDMIGVAQTGTGKTAAFLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 + L G + +I+ PTRELA Q+ E + N++ + GG I +E + + Sbjct: 61 SKLSDGGYPEKAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQEKR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + V+DEADRMLDMGF I I +P Sbjct: 121 GLAMGADVIIATPGRLISHLSLGNVDLSEVSFFVLDEADRMLDMGFSDDIMQIVKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q ++ L +P +++ + ++ +V AQ K +L+++ Sbjct: 181 RQTIMFSATMPRKIQDLARTILHDPVEVKLAVSKPADKIVQSAYVCYEAQ---KVSLVKK 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + + I+F + K V ++ +L + GF V A+H +++Q+ R +++ FK I Sbjct: 238 LFAERPPHRV-IVFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQID 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V NFDVP+ AE+Y+HRIGRT RA G+A TLV+++D + Sbjct: 297 VLVATDIVARGIDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRF 356 Query: 358 DAIEKLIEKKVDWLN-----GDLSSLNP-------------PLEKIDIAQHNHARKNNPI 399 +IE +E +++ + G+ + P P + + RK +PI Sbjct: 357 ASIEHFLETEIEKRSLPEGLGEGPAYRPEKGGEKGNGRHGSPRHGRRQGKSGNRRKTSPI 416 Query: 400 PQKST 404 PQ T Sbjct: 417 PQTHT 421 >gi|104779961|ref|YP_606459.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48] gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE) [Pseudomonas entomophila L48] Length = 443 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 150/368 (40%), Positives = 219/368 (59%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA LGL +V + Y PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MNFAKLGLIEPLVRTLQALDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV N +Y +N L+ + GG+ Q + Sbjct: 61 QRLALEGEKVAANSVRALVLVPTRELAEQVHANVREYAENLPLSTYAVYGGVSINPQMMR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD F + + ++ LV+DEADRMLD+GF +Q + + +P R Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAIKFGQVQTLVLDEADRMLDLGFAEELQAVYAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++ ++ L +P IEV+ ++ A T++ V +K L L Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNAAASTVKQWLVPV--DKKRKADLFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q K ++F + V L L +G + IHG+ Q +R + L +FK +Q+ Sbjct: 239 LRKQ-RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357 Query: 359 AIEKLIEK 366 +IE LI + Sbjct: 358 SIETLIRQ 365 >gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3] gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3] Length = 524 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 230/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 40 FASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 99 Query: 61 -TILEKGRAR--------------------VRMPRTLILEPTRELAAQVADNFEKYGKNY 99 L+K +A+ V P L+L PTRELA QV YGK+ Sbjct: 100 FAQLQKTQAQQPRAPREPQSADRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 159 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 160 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 219 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTA 214 LDMGFI I+ I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ ++ A Sbjct: 220 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIVQKMEARTNIA 279 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ D + IIF K + L L GF A Sbjct: 280 QTVHYV-----DDRDHKDRLLDHLLRD-DALDQAIIFTATKIDADQLAGRLADAGFESAA 333 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 334 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 393 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 394 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 423 >gi|84490017|ref|YP_448249.1| helicase [Methanosphaera stadtmanae DSM 3091] gi|84373336|gb|ABC57606.1| predicted helicase [Methanosphaera stadtmanae DSM 3091] Length = 583 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/370 (38%), Positives = 225/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL +SP++ AV D G+ + +PIQ IP +L DV G AQTGTGKTA+F +P+L Sbjct: 4 LKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ ++ +IL PTRELA QVA+ K + V + GG P + Q K L Sbjct: 64 ENIDSEDNNLQ---AIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G ++I TPGR++DH +RG L +NNI+ +++DEAD MLDMGF I+ I +P+ RQ Sbjct: 121 QKGVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ E+ ++++ + NP+ ++V T +E + + L Sbjct: 181 FLLFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D ++FCN K+ V L L+ +G+ +HG++ Q R +++S FK+G I+++ Sbjct: 241 HDFDL---SLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V VFNFD+PN E Y+HRIGRTGRAG+ GKA++ V+ +I + Sbjct: 298 VATDVAARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRD 357 Query: 360 IEKLIEKKVD 369 I++ + K++ Sbjct: 358 IQRYAKTKIE 367 >gi|315608792|ref|ZP_07883768.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae ATCC 33574] gi|315249486|gb|EFU29499.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae ATCC 33574] Length = 579 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 162/445 (36%), Positives = 263/445 (59%), Gaps = 19/445 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFDELDLNDNVLDALYDMRFDSCTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116 + L+ G +I+ PTRELA Q+ + +G N +VA+ G G ++ + Sbjct: 61 SKLDDGGYPKDAINCVIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L GADV+I TPGR++ H + G + M+ + V+DEADRMLDMGF I I L+P Sbjct: 121 KSLRLGADVVIATPGRLISHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPD 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 T QT++FSATM +++++++ L+NP I++ S AE I+ Y ++K +++ Sbjct: 181 TCQTIMFSATMPAKIEELAKTLLKNPVEIKLAV-SKPAEKIKQEAYVCYE--TQKLGIIK 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + ++ D +K IIFC K V + +L+++ + +H +++Q R I+ FK G + Sbjct: 238 DIFKAGD-LKRVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R G+A TLV+++DI H Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGRAITLVSEDDIYH 356 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQKSTGFDRRKKNYSS 415 IEK +EK+V+ + PL D+ + + R++ P ++T RR+K+ Sbjct: 357 FQQIEKFLEKEVEKI---------PL-PADLGEAPEYTRQSRPSKGRTTAKSRRRKDRDQ 406 Query: 416 QKSHIPLKESEKISKLQQDIQENDA 440 Q + ++ +QD + A Sbjct: 407 QAHRHKPNNQRRPARPEQDKEREAA 431 >gi|258593189|emb|CBE69527.1| ATP-dependent RNA helicase [NC10 bacterium 'Dutch sediment'] Length = 407 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 147/374 (39%), Positives = 224/374 (59%), Gaps = 9/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L + + AG+ + TPIQ +T+PL L D+ G AQTG+GKTA+F++P+ Sbjct: 4 FDTFSLPASIARGIEAAGFTQCTPIQAETLPLALAGKDIAGQAQTGSGKTAAFLIPLFVR 63 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R PR LIL PTRELA Q+ + E G LT GG+ ++ Q L+ Sbjct: 64 LLTSRHPTLSGAPRALILAPTRELAVQILWDAELLGGFTGLTRLAAYGGVDYQKQRDALQ 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTR 178 + D+LI TPGR++D+F +G ++ +E+LV+DEADRM DMGFI ++ + +P R Sbjct: 124 QNVDILIGTPGRLIDYFKQGVYELSQVEVLVVDEADRMFDMGFIKDLRFLLRRLPPYHKR 183 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+ LFSAT++ ++S F+ NP ++ ++ T + +EH + + +K LL+ L Sbjct: 184 QSFLFSATLSFREMELSYEFMNNPIKVAISPEQVTVDKVEHLLF--HVEKQEKFRLLRWL 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ ++ + +IF N ++ L L + GF I G+IDQR R++I++ FK GT+ + Sbjct: 242 LQ-REAWQRILIFSNTRQGAERLTDKLVRCGFRAGLISGSIDQRKRLQIITKFKAGTLPI 300 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGL + V HV N+D+P E+Y+HRIGRT RAG GKA +L +E + +D Sbjct: 301 LVATDVASRGLHVEAVSHVINYDLPQDPEDYVHRIGRTARAGAAGKAISLADEEYVLSLD 360 Query: 359 AIEKLIEKK--VDW 370 AIE+ I K V W Sbjct: 361 AIERYIGFKIPVQW 374 >gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1] gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1] Length = 615 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 219/361 (60%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS V+ AV GY P+ IQ TIP +LQ DV G+AQTGTGKTA+F LP+L+ Sbjct: 29 FDSLGLSAGVLEAVKALGYETPSAIQAATIPTLLQGRDVVGLAQTGTGKTAAFALPVLSN 88 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L+ P+ L+L PTRELA QV + FE+Y N + + + + GG + Q L R Sbjct: 89 LD---VYQNAPQALVLAPTRELALQVCEAFERYASNLDGVRILPVYGGQGYGPQLTALRR 145 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGRI+DH +G L ++ + LV+DEAD ML+MGF ++ I + P +Q Sbjct: 146 GVHVVVGTPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVETILAETPEDKQVA 205 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++S+ +L++ + I V + T I ++ Y +K L ++L+ Sbjct: 206 LFSATMPAQIRRLSKKYLRDAEEISVKAKTQTNTNITQRYL--MVSYPQKVDALTRILEV 263 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + I+F K +L L +GF+ AI+G+I Q R K ++ K+G++ ++VA Sbjct: 264 EN-FEGMIVFTRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSLDILVA 322 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E Y+HRIGRTGRAGR G A + V + + AIE Sbjct: 323 TDVAARGLDVERISHVVNYDLPTDVEAYVHRIGRTGRAGRTGDAISFVTPRERWLLRAIE 382 Query: 362 K 362 K Sbjct: 383 K 383 >gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS] gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS] Length = 657 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 226/373 (60%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F L L+ ++ A+ GY PTPIQ TIPL+L+ DV G AQTGTGKTA+F LP+L Sbjct: 27 VNFRSLELAEPLLRALEAVGYENPTPIQASTIPLLLEGRDVLGQAQTGTGKTAAFALPVL 86 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ P+ L+L PTRELA QVA+ F Y + V + GG + Q + L Sbjct: 87 SNID---LSATDPQALVLAPTRELAIQVAEAFHTYAEFMPGFHVLPIYGGQDYGVQIRNL 143 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH +G L ++N++ LV+DEAD ML MGFI ++ I P +RQ Sbjct: 144 KRGVHVVVGTPGRVMDHMRKGTLNLDNLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQ 203 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM + +++ +L+ P I + T ++T ETI + + K L ++L Sbjct: 204 VALFSATMPQPIVRIARKYLKAPAEITIQTKTTTVETIRQRYWMVGGHH--KLDALTRIL 261 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + IIF K V L L+ +G++ A++G++ Q +R + + K+GT+ ++ Sbjct: 262 EVE-PFDGIIIFVRTKTETVALAEKLQARGYAAAALNGDMVQSARERTIEQLKDGTLNIV 320 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V+ + + A Sbjct: 321 IATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLFA 380 Query: 360 IEKLIEKKVDWLN 372 IE+ K+++ + Sbjct: 381 IERATRKRIELME 393 >gi|94265968|ref|ZP_01289692.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93453471|gb|EAT03884.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 369 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/372 (38%), Positives = 215/372 (57%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA + + GY PTPIQ + IP + + D+ G+AQTGTGKTA+FVLP+L Sbjct: 1 MSFAQFDFDATLTANIAACGYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R RVR +I+ PTRELA Q+ N + G+ + + GG+ Q K Sbjct: 61 QKLSAGPRGRVR---AVIVAPTRELAEQIHVNIGELGRQTGIRSVAVYGGVSKFGQLKAF 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++++ PGR+LDH + + + +E+LV+DEAD M DMGF+P I+ + +P RQ Sbjct: 118 KAGVEIIVACPGRLLDHLDSRDVNLGAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM E++ ++++ L++P R+++N TA + + K ALL+Q++ Sbjct: 178 NLLFSATMPAEIRHLADSILKDPARVQINHTQPTALVAHKLY---RVEKQGKGALLKQVM 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + + ++F K L +LEK G A+ GN+ Q R + FK+G +M Sbjct: 235 Q-ESAFSSALVFTRTKHAAKKLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIM 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+P E Y HRIGRTGRA R+G+A+T ED + Sbjct: 294 VATDIAARGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTFATAEDKVIVRQ 353 Query: 360 IEKLIEKKVDWL 371 IE+ I ++ L Sbjct: 354 IERAIGSRMITL 365 >gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270] gi|158447119|gb|EDP24114.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270] Length = 580 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 220/368 (59%), Gaps = 6/368 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D LS +V+ AV++ G+ +P+PIQ + IP +L D+ G AQTGTGKTASF +P Sbjct: 4 NFNDFNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 I+EK + + ++L PTREL+ QVA+ K K +TV + GG P E Q + L+ Sbjct: 61 IVEKVNKNSKTTQAMVLCPTRELSIQVAEEISKLAKYKGVTVVPIYGGQPIERQIRSLKM 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH R L NI+ V+DEAD M DMGF I+ I +P+ RQT Sbjct: 121 GVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQTT 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+ + + P+ I+V T + + A +++ K +L ++L Sbjct: 181 FFSATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFA--LKHNMKLEILSRILDV 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q+ K ++FCN KK V +L L+ +G+ +HG++ Q R +++ F+ TI ++VA Sbjct: 239 QNP-KLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV V N+D+P E Y+HRIGRT RAGR G A + V+ ++ + I+ Sbjct: 298 TDVAARGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQIQ 357 Query: 362 KLIEKKVD 369 K + K++ Sbjct: 358 KYTKTKIE 365 >gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891] gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891] Length = 660 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 224/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ IP +L D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ + R P+ +IL PTRELA QVA + GKN L V + GG Q + L Sbjct: 66 NKLDLAQ---RKPQAIILAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+ + E FL++P+ I+V + T + +E F +K + +LL Sbjct: 183 RVLFSATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T + I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEETDAS-IVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV ++ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|225011497|ref|ZP_03701935.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium MS024-2A] gi|225004000|gb|EEG41972.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium MS024-2A] Length = 415 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/374 (39%), Positives = 234/374 (62%), Gaps = 12/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L ++ A+ GY +PTPIQ + IP++L+ HD+ G+AQTGTGKTA+F +P+L Sbjct: 1 MTFKDLKLELPILKALEKQGYTQPTPIQEQAIPILLKGHDLLGVAQTGTGKTAAFGIPIL 60 Query: 61 TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L K G+ + R + L++ PTRELA Q+A+NF Y + +L ++ GG+ Q Sbjct: 61 NHLLKENNSGQGK-RKIKALVVTPTRELAIQIAENFTDYSQFTHLRNTVIFGGVKQSKQV 119 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L++G D+L+ TPGR+LD N+G + +++ +V+DEAD+MLDMGFI ++ I + +P Sbjct: 120 ASLQQGVDILVATPGRLLDLMNQGYITFRDLKYVVLDEADQMLDMGFIHDVKKIIAKLPP 179 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ+L FSATM + ++S+ L + +R+ + +TAE ++ + + K LL Sbjct: 180 NRQSLFFSATMPKTIVELSQKMLGDFERVTIKPEQATAEKVKQGVY--FVSKNNKPNLLI 237 Query: 237 QLL--QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LL + QD++ ++F K + +L+K AIHGN Q R K L FK+G Sbjct: 238 HLLDQRPQDSV---LVFSRTKHGANKIVKTLDKAKIKSAAIHGNKSQAQRQKALGEFKDG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++++++A+D+AARG+D+ D+ V N+D+PN +E Y+HRIGRTGRA G A + ++ Sbjct: 295 SLKVLIATDIAARGIDVDDLALVINYDLPNVSETYVHRIGRTGRASASGIALSFCMGDER 354 Query: 355 KHIDAIEKLIEKKV 368 ++ IEKLI+++V Sbjct: 355 PYLKDIEKLIKQQV 368 >gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595] gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 620 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 218/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV D G+ PT IQ + IPL+L+ DV G+AQTGTGKTA+F LPML Sbjct: 7 FADLNLPETILSAVTDLGFTSPTAIQEQAIPLLLEGRDVLGVAQTGTGKTAAFALPMLAH 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 ++ R + L+L PTRELA Q A+ + + L V + GG + Q L Sbjct: 67 VDPNN---RHVQALVLAPTRELALQGAEAINTFAARTGGLDVVAVYGGSAYGPQLGALRD 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D +RG L ++ I V+DEAD ML MGF ++ I + +P R + Sbjct: 124 GAQVVVGTPGRVMDMIDRGALDLSTIRYFVLDEADEMLRMGFAEDVEKIATGLPEERISA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++ V+E L NP ++V++PSST +TI + ++ K L ++L + Sbjct: 184 LFSATMPKQIRMVAETHLNNPAEVQVSSPSSTVDTITQTYAVVPTRH--KIGALARVLAT 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++F + +L L +G A+ G++ Q+ R K++ ++G+I ++VA Sbjct: 242 TEA-DAALVFVRTRATAEDLAIELSTRGVQAAALSGDVAQKDREKLVDRLRQGSIDVLVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V NFD+P E Y+HRIGRTGRAGR G A + V ++ + + IE Sbjct: 301 TDVAARGLDVERIGLVVNFDIPREVETYVHRIGRTGRAGREGTALSFVTPKEKQRLRRIE 360 Query: 362 KLIEKKV 368 K+ ++ Sbjct: 361 KVTRTQM 367 >gi|145727|gb|AAA23674.1| deaD [Escherichia coli] Length = 571 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL ++ A+ D GY KP+PIQ + IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ + K+ + V L GG ++ Q + L + Sbjct: 85 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+LDH RG L ++ + LV+DEAD ML MGFI ++ I + +P QT Sbjct: 142 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++++ F++ P+ + + + +T I + + +K L + L++ Sbjct: 202 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNEALVRFLEA 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D IIF K + + +LE+ G++ A++G+++Q R + L K+G + +++A Sbjct: 260 ED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +++I+ Sbjct: 319 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 378 Query: 359 AIEKLIEKKVDWLNGDL 375 KL +V+ N +L Sbjct: 379 RTMKLTIPEVELPNAEL 395 >gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis EO147] gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis C6786] Length = 509 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 228/387 (58%), Gaps = 31/387 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGY KPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 42 FASLGLSPEIVSALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101 Query: 63 L--------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNYN-L 101 ++G R R P+ L+L PTRELA QV YGK+ L Sbjct: 102 FAQLQKTQAQQPREPQQGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRL 161 Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161 ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRMLDM Sbjct: 162 RTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDM 221 Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETI 217 GFI I+ I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A+T+ Sbjct: 222 GFIDDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIAQTV 281 Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 + K LL LL+ + IIF K + L L GF A+HG Sbjct: 282 HYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFESAALHG 335 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 ++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGRTG Sbjct: 336 DLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTG 395 Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RAGR G A +LV + + IE+ + Sbjct: 396 RAGRSGTAVSLVHHAEQGALKRIERFV 422 >gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis O35E] Length = 581 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 228/368 (61%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLGL+ ++ A+ +GY PTPIQ K IP L D+ AQTG+GKTA+FVLP+L Sbjct: 20 FSDLGLNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDK 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + + + + LIL PTRELA QV D+ +YG N+ L+GG P+ Q + L++ Sbjct: 80 MSRKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKK 139 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH G++ ++ +++L++DEADRMLDMGF I+ I P TRQT+ Sbjct: 140 GVQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTV 199 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240 + SAT + K++E+F NP+++ + S+ E++ +C ++ K +L Q+L Sbjct: 200 MSSATWDGAVGKIAESFTVNPEKVSIKVESAHIDESVYYC-----DDFNHKNNILLQVLN 254 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +K +IF K + L L + GF +HG++ Q R +I+S+ K G ++V Sbjct: 255 NP-KIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLV 313 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV N+D+P + E+Y+HRIGR GRAGR G A L + D + ++ I Sbjct: 314 ATDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSINDNRQLEHI 373 Query: 361 EKLIEKKV 368 + +++++ Sbjct: 374 NRYLKRQM 381 >gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450] gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450] Length = 420 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 155/388 (39%), Positives = 225/388 (57%), Gaps = 11/388 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS + V G+ PTPIQ + IP VL+ DV AQTGTGKTA+F LP+L Sbjct: 4 FQHLGLSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLLNK 63 Query: 63 LEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L A R P++ L++ PTRELA QV D+ Y + + GG Q + Sbjct: 64 LLDQEAS-RDPQSNDVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTAYGGTSMNVQTQ 122 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G DVLI TPGR+LDH + + LV+DEADRMLDMGF+P IQ I + Sbjct: 123 NLRQGCDVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDIQRILKKLNPE 182 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL FSAT ++ ++ + P ++V +STAE ++ +K LL Sbjct: 183 RQTLFFSATFDKRIKTIAHKLMNEPVEVQVTPSNSTAEKVKQMVYPV--DKKRKAELLAY 240 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ S++ + ++F K+ L L+ G +I+G+ Q +R K L +FK GTI+ Sbjct: 241 LIGSRN-WQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGTIR 299 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++A+D+AARGLDI + V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++K++ + Sbjct: 300 ALIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGQEGLAVSLMSKDEEYLL 359 Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLE 383 +AIE+L++ ++ +WL G S+ P E Sbjct: 360 EAIERLLDARLPQEWLQGFEPSIEEPTE 387 >gi|89052606|ref|YP_508057.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1] gi|88862155|gb|ABD53032.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1] Length = 451 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 229/374 (61%), Gaps = 5/374 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF--VLPM 59 DF LGL P + + AG+ +PTPIQ + IPL L HD+ G+AQTGTGKT +F L Sbjct: 20 DFDMLGLKPILAKTLKTAGFSEPTPIQNQAIPLALDGHDIMGLAQTGTGKTLAFGLPLLE 79 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + G+ + R LIL PTREL Q+AD+ + +N + +A ++GG Q L Sbjct: 80 HLLSLHGKPEPKTARALILAPTRELVNQIADSLRVFTQNTPVKIATVVGGQSIGRQISTL 139 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR++D +R + ++ ++ LV+DEAD+MLD+GFI ++ I + RQ Sbjct: 140 SRGTDILVATPGRLMDLMDRRAIDLSTVKHLVLDEADQMLDLGFIHALRKIAPALGTPRQ 199 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM ++++++ +L NPK+++V+ P A+ + V + K A L+++L Sbjct: 200 TMLFSATMPKQMEELASAYLSNPKKVQVSPPGKAADKVTQ--VVHFMPKPAKPAKLREVL 257 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++D ++F K L L G++ +IHGN Q R + + F++GTI+++ Sbjct: 258 -NEDPDALVLVFGRTKHGCEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGTIKIL 316 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP V +V N+++P+ +NY+HRIGRT RAGR G+A + E++ + Sbjct: 317 VATDVAARGIDIPGVAYVINYELPDTPDNYVHRIGRTARAGREGEAIAFCSAEEVDLLVQ 376 Query: 360 IEKLIEKKVDWLNG 373 IEK+++ + +G Sbjct: 377 IEKVMKMSIPVASG 390 >gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546] gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546] Length = 643 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ IP +L D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ + R P+ ++L PTRELA QVA + GKN L V + GG Q + L Sbjct: 66 NKLDLAQ---RKPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+ + E FL++P+ I+V + T + +E F +K + +LL Sbjct: 183 RVLFSATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV ++ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] Length = 479 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/349 (41%), Positives = 215/349 (61%), Gaps = 6/349 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +TIPL L D+ G AQTGTGKTA+F +P++ ++ + ++ +I+ Sbjct: 2 GFEEATPIQAETIPLSLANKDLIGQAQTGTGKTAAFGVPLIDKIDTSKDVIQ---GIIIA 58 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QV++ K G V + GG Q + L++ +++ TPGR+LDH R Sbjct: 59 PTRELAIQVSEELYKIGYGKRARVLSIYGGQDINRQIRALKKPPHIIVGTPGRVLDHIKR 118 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 L ++N+ ++DEAD ML+MGFI I++I + VP RQTLLFSATM +Q+++E F+ Sbjct: 119 KTLRLDNVHTAILDEADEMLNMGFIEDIESILASVPVERQTLLFSATMPAPIQRMAERFM 178 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 ++P+ I V T IE +V Q K +L +LL Q + + IIF K+ V Sbjct: 179 RDPQIIRVKAKEMTVPLIEQFYVEV--QERTKFDVLTRLLNIQ-SPELAIIFGRTKRRVD 235 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 L +L +GF IHG++ Q RM +L FKEG+I ++VA+D+AARGLDI V HV+N Sbjct: 236 ELAEALNLRGFLAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGLDISGVTHVYN 295 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 FD+P E+Y+HRIGRTGRAG+ G A T + + ++ +E+ + K+ Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKEGMAMTFITPREKSYLAVVERTTKSKM 344 >gi|317503390|ref|ZP_07961434.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae DSM 15606] gi|315665485|gb|EFV05108.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae DSM 15606] Length = 542 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 234/373 (62%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + K TP+Q K IP +L +DV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFDELELNNSVLDALYDMRFEKCTPVQEKCIPEILNGNDVLGVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116 + L+ G + LI+ PTRELA Q+ + +G N +VA+ G G ++ + Sbjct: 61 SKLDDGNYPEKAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 KSLQLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDILKIAKKLPQ 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + QT++FSATM D+++++++ L+NPK I++ S AE I+ Y ++K +++ Sbjct: 181 SCQTIMFSATMPDKIEELAKTLLKNPKVIKLAV-SKPAEKIKQSAYVCYE--TQKMGIIK 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + +S D +K IIFC K V + +L+++ + +H ++DQ R +++ FK G Sbjct: 238 DIFKSDD-LKRVIIFCGSKMKVKQVAGALQRKHINCGEMHSDLDQAMRDEVMFKFKSGQF 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R G A T V+ +DI + Sbjct: 297 DVLVATDIVARGIDIDDISMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSDDDIYY 356 Query: 357 IDAIEKLIEKKVD 369 IEK + K+VD Sbjct: 357 FQLIEKFLGKQVD 369 >gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] Length = 634 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L ++ A+ D G+V PTPIQ +IPL+L+ D G AQTGTGKTA+F LP+L Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 K + P+ +I+ PTRELA QVA + G+N L V + GG Q + L Sbjct: 67 ---KINLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALS 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D NR +L + + ++DEAD ML MGF+ + I P T Q Sbjct: 124 RGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQR 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++ + + +L+ P R++V + T + +E F +K + +LL+ Sbjct: 184 ILFSATMPPMVKTIVDRYLREPARVDVAGTNHTVDKVEQNFWVVKG--VEKDEAMSRLLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T I+F +++ L L +GF A+HG+I Q R + + N K G I ++V Sbjct: 242 TEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV ++ + I Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTI 360 Query: 361 EKLIEKKVD 369 E++ + ++ Sbjct: 361 ERVTKSTME 369 >gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD 2210633] gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030] gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034] gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466] gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037] gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD 2210633] gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466] gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034] gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037] gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030] Length = 643 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ IP +L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ + R P+ ++L PTRELA QVA + GKN L V + GG Q + L Sbjct: 66 NKLDLDQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA V++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+ + E FL++P ++V + T + ++ F +K + +LL Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|158333359|ref|YP_001514531.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017] gi|158303600|gb|ABW25217.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017] Length = 574 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/361 (39%), Positives = 217/361 (60%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL ++P ++ AV + GY P+PIQ ++IP +L D+ G AQTGTGKTA+F LP+L+ Sbjct: 9 FADLAIAPPLLQAVEEVGYESPSPIQAQSIPPLLAGRDLLGQAQTGTGKTAAFALPLLSQ 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ +A P+ L+L PTRELA QVA+ + Y ++ +A L GG Q ++L R Sbjct: 69 LDLSQAH---PQILVLAPTRELAIQVAEAMQTYARHLPGFHIATLYGGQNISTQLRQLRR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L + N+ +V+DEAD ML MGFI ++ I P RQ Sbjct: 126 GVHVVVGTPGRLIDHLLRGTLKLENLSTVVLDEADEMLRMGFIEDVEKILDETPKGRQVA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++V++ L +P I++ + ++T T+ + K L ++L+ Sbjct: 186 LFSATMPSAIRRVAQRHLNDPVEIKIKSKTATVSTVTQRYWQVRG--LSKLDALTRILEV 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D + ++F K L LE +G+S + G+I Q R K + K G + ++VA Sbjct: 244 ED-FEAMLVFVRTKVMAAELAEKLEARGYSSAVLSGDISQPLREKTIERIKAGRLDIIVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E Y+HRIGRTGRAGR G A V+ + + + +IE Sbjct: 303 TDVAARGLDVERISHVINYDIPYDTETYVHRIGRTGRAGRQGDAILFVSSREKRMLRSIE 362 Query: 362 K 362 + Sbjct: 363 Q 363 >gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia R551-3] Length = 646 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 224/375 (59%), Gaps = 11/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA LGLS V+ AV GY P+PIQ TIP +L+ DV G AQTGTGKTA+F LP+L Sbjct: 9 LQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKL 119 + ++ + + P+ L+L PTRELA QVA+ F+ Y K V + GG P+ Q L Sbjct: 69 SNIDLQQIK---PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSAL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG +++ TPGR++DH +R L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 126 RRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQ 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++++ +LQ+P + + ++T+ I + + K L ++L Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMH--KLDALTRIL 243 Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + D M IIF K L L+ +G + AI+G++ Q R + ++ KEG + Sbjct: 244 EVEPFDAM---IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A + + Sbjct: 301 ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML 360 Query: 358 DAIEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 361 RQIERATRQPIEEMQ 375 >gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256] gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256] Length = 457 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 220/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ +NP+ IEV + + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKNPEIIEVERVDNQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYIARKL 369 >gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH] gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH] Length = 467 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/363 (40%), Positives = 226/363 (62%), Gaps = 11/363 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L +++ + + G+ KP+PIQ K IP+VLQ D+ AQTGTGKTA+F LP+L Sbjct: 1 MTFNDFNLKKEILKRLEEIGFEKPSPIQEKAIPVVLQGKDIVAQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +LEKG+ + LI+ PTRELA QV++ ++GK+ + A + GG + Q + Sbjct: 61 NMLEKGQ------KALIITPTRELAIQVSEEIFRFGKHLGIHTATVYGGSSYSRQINHI- 113 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++V++ TPGR++D + GK+ + E +V+DEAD MLDMGF+ I+ I VP RQT Sbjct: 114 KNSEVIVATPGRLIDLLSSGKIDIAP-EYVVLDEADEMLDMGFLDDIKEIFKYVPSNRQT 172 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + +++ L++P+ I++ T E I+ F ++ + AL++ + Sbjct: 173 LLFSATMPKPILSLAKTILKDPEFIQITKKEVTNENIKEYFYVI-DEHERNDALIRLIDY 231 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q I+FC KK+V + L GF +HG++DQR R +++ FK I+++V Sbjct: 232 KQPN--KAIVFCRTKKDVDTVADFLSGVGFDAKGLHGDMDQRKREEVIKGFKGNRIEILV 289 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HVFN+ +P E+Y+HRIGRTGRAG+ G A +LV + + + I Sbjct: 290 ATDVAARGLDVNDVTHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALSKI 349 Query: 361 EKL 363 +K+ Sbjct: 350 QKI 352 >gi|332703129|ref|ZP_08423217.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 532 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 224/371 (60%), Gaps = 11/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F L LS +++ A+ D G+ + +PIQ IPLV+ DV G AQTGTGKTA+F +P Sbjct: 4 LRFESLTLSKEMLKAIEDMGFEEASPIQALAIPLVMAGRDVVGQAQTGTGKTAAFGIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ILE R + L+L PTRELA QVA+ K NL V + GG P + Q K L Sbjct: 62 -ILEAVDPRSHDLQALVLCPTRELAIQVAEELNTLAKYKLNLRVLPVYGGQPIDRQFKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G ++I TPGR++DH RG L + + ++V+DEAD MLDMGF I+ I VP RQ Sbjct: 121 RQGVQIVIGTPGRVMDHMERGTLKLGKVRMVVLDEADEMLDMGFREDIERILDDVPEERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237 T+ FSATM E+ +++E +L P+ ++V+ T +E + V + + C ++ Sbjct: 181 TIFFSATMRPEIMRLAEKYLDKPEFVKVSHKVLTVPNVEQIYYEVPRFGRLEAMCRIIDF 240 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 K ++F N KK V L L+ +G+ +HG+++Q R ++++ F+ G+I+ Sbjct: 241 Y-----NPKLTVVFANTKKGVDELVEHLQARGYMADGLHGDMNQAQRDRVMAKFRAGSIE 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+D+ D+ VFN+D+P+ E Y+HRIGRTGRAGR G+AFT + ++ + Sbjct: 296 ILIATDVAARGIDVEDIEAVFNYDIPSDVEYYVHRIGRTGRAGRSGRAFTFASGKEFYKL 355 Query: 358 DAIEKLIEKKV 368 I++ + K+ Sbjct: 356 RDIQRFTKAKI 366 >gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450] gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450] Length = 641 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 224/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ IP +++ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 LE + R P+ ++L PTRELA QVA + G+N + L V + GG Q + L Sbjct: 66 NKLELSQ---RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KNGAHIVVGTPGRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+ + E FL++P I+V + T + +E F +K + +LL Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPITIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|46581710|ref|YP_012518.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str. Hildenborough] gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio vulgaris str. Hildenborough] gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1] Length = 532 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 221/370 (59%), Gaps = 11/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L +++ A+ + G+ +P+PIQ IP +L+ DV G AQTGTGKTA+F LP+L Sbjct: 7 FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ A R + L+L PTRELA QVA+ K+ + + + GG P E Q L R Sbjct: 67 ID---AADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH NRG L + + + V+DEAD MLDMGF I+ I S +P Q+ Sbjct: 124 GAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM D + +++ FL+ P+ + V T E + V + + C + + Sbjct: 184 FFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAYI 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + I+F K+ V L +L+++G A+HG+++Q R +++S F+ G I ++ Sbjct: 244 P-----RKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ DV V NFD+PN E Y+HRIGRTGRAGR G+AF+ A D+ + Sbjct: 299 VATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRD 358 Query: 360 IEKLIEKKVD 369 I+++ ++D Sbjct: 359 IQRVTGSRID 368 >gi|94265120|ref|ZP_01288885.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93454407|gb|EAT04705.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 369 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/372 (38%), Positives = 215/372 (57%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA + + GY PTPIQ + IP + + D+ G+AQTGTGKTA+FVLP+L Sbjct: 1 MSFAQFDFDATLTANIAACGYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R RVR +I+ PTRELA Q+ N + G+ + + GG+ Q K Sbjct: 61 QKLSAGPRGRVR---AVIVAPTRELAEQIHVNIGELGRQTGIRSVAVYGGVSKFGQLKAF 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++++ PGR+LDH + + + +E+LV+DEAD M DMGF+P I+ + +P RQ Sbjct: 118 KAGVEIIVACPGRLLDHLDSRDVNLGAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM E++ ++++ L++P R+++N TA + + K ALL+Q++ Sbjct: 178 NLLFSATMPAEIRHLADSILKDPARVQINHTQPTALVAHKLY---RVEKQGKGALLKQVM 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + + ++F K L +LEK G A+ GN+ Q R + FK+G +M Sbjct: 235 Q-ESAFSSALVFTRTKHAAKKLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIM 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ + HV N+D+P E Y HRIGRTGRA R+G+A+T ED + Sbjct: 294 VATDIAARGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTFATAEDKVIVRQ 353 Query: 360 IEKLIEKKVDWL 371 IE+ I ++ L Sbjct: 354 IERAIGSQMITL 365 >gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546] gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546] Length = 419 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 151/387 (39%), Positives = 229/387 (59%), Gaps = 9/387 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++ + G+ +PT +Q + IP VL+ DV AQTGTGKTA+F LP+L Sbjct: 5 FAALGLGSTLLSTLESLGFKQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPILQK 64 Query: 63 LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + R L+L PTRELA QV DN +Y + V + GG Q + Sbjct: 65 LIDSDTKRDIQSNDVRALVLVPTRELAQQVFDNLTQYAAQTKIKVVAVYGGTSMNVQTRN 124 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G D+LI TPGR++DH + ++ E LV+DEADRMLDMGF+P I+ I R Sbjct: 125 LDQGCDILIATPGRLIDHMYCKNINLHKTEYLVLDEADRMLDMGFMPDIKRILQRCNDDR 184 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT ++ ++ L+ P ++V+ +STAET++ +K LL L Sbjct: 185 QTLFFSATFDKRIKTIAYRMLEEPVEVQVSPSNSTAETVKQMVYPV--DKKRKAELLAYL 242 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S++ + ++F K+ L L+ G +I+G+ Q +R K L +FK G ++ Sbjct: 243 IGSRN-WQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVRA 301 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARGLDI + V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++ + Sbjct: 302 LIATDVAARGLDIQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLLH 361 Query: 359 AIEKLIEKKV--DWLNGDLSSLNPPLE 383 AIE+L++ K+ +WL G SL +E Sbjct: 362 AIERLLDTKLPQEWLQGFEPSLIEEIE 388 >gi|158334865|ref|YP_001516037.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017] gi|158305106|gb|ABW26723.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017] Length = 471 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 220/368 (59%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGLS V + G+ PT IQ + IP +L D+ G AQTGTGKTA+F LP Sbjct: 3 LTFSQLGLSQTRVDCLEALGFTTPTQIQAEAIPHLLAGRDIIGQAQTGTGKTAAFSLP-- 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ILE+ V+ P+ LIL PTRELA QV++ ++ + L V + GG + Q +L Sbjct: 61 -ILEQLDPTVKTPQALILTPTRELAVQVSEAVYQFKADGALRVVAIYGGQSIDRQISQLR 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+LD +RG+++++ + V+DEAD ML+MGFIP ++ I VP R+T Sbjct: 120 RGAQLIVGTPGRVLDLLSRGEIILDQLSWFVLDEADEMLNMGFIPDVRKILERVPGDRKT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM E+ K+S+ FL +P + V P + I +++ +LQ +L+ Sbjct: 180 AFFSATMAPEIYKLSKQFLNDPVTVTVEQPKAAPTRINQVAYRIPRTWARST-VLQAVLE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D ++ IIF ++ L L+ G+S HG++ Q R ++L F++ I+ +V Sbjct: 239 LEDP-ESAIIFVRTRREAATLTQQLQTAGYSADEYHGDLSQSQRERLLDRFRQRRIRWVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGL + D+ HV N++ P+ E+Y+HRIGRTGRAG G A +LV D + I Sbjct: 298 ATDIAARGLHVDDLSHVINYEPPDSVESYVHRIGRTGRAGNEGTAISLVHALDRWKLHEI 357 Query: 361 EKLIEKKV 368 EK I +++ Sbjct: 358 EKHIRQEI 365 >gi|260428461|ref|ZP_05782440.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45] gi|260422953|gb|EEX16204.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45] Length = 430 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/376 (38%), Positives = 226/376 (60%), Gaps = 5/376 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 DF LGL+P + A+ G+ +PTPIQ + IPL L+ HDV G+AQTGTGKT +F LP++ Sbjct: 2 FDFDMLGLAPTLSDALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLI 61 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + G+ + + L+L PTREL Q+A++ + + L V ++GG Q Sbjct: 62 DALLAQPGKPLPKTVKALVLAPTRELVNQIAESLRQLTEGTKLRVGTVVGGQSINRQINF 121 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR++D +R + ++ LV+DEAD+MLD+GFI ++ I + R Sbjct: 122 LSRGTDILVATPGRLIDLMDRKSVDLSQTRQLVLDEADQMLDLGFIHALRKIAPKLGTPR 181 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATM +++++S +L NP+R++V+ P A+ I V + K L + L Sbjct: 182 QTMLFSATMPKQMEELSAAYLTNPRRVQVSPPGKAADKITQS-VHFLGKDDKPRKLREVL 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q D + ++F K L L GF+ +IHGN Q R + + F++G I + Sbjct: 241 RQDLDALT--LVFSRTKHGAERLMKGLVADGFNAASIHGNKSQGQRDRAIKAFRDGDINV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DIP V +V N+D+P +NY+HRIGRT RAGR G+A A ++ + Sbjct: 299 LVATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLR 358 Query: 359 AIEKLIEKKVDWLNGD 374 I++L++ ++ +G+ Sbjct: 359 QIQRLMKIEIPVASGE 374 >gi|76584014|gb|ABA53488.1| ATP-independent RNA helicase [Burkholderia pseudomallei 1710b] Length = 505 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 50 FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 109 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 110 LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 166 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 167 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 226 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PKR+++ ++ + + T + LL + Sbjct: 227 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 286 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 287 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 342 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E Y+HRIGRTGRA + G A +L + ++ + IE Sbjct: 343 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 402 Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387 + + ++V+W GD + L PP+E + I Sbjct: 403 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 434 >gi|260168758|ref|ZP_05755569.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. F5/99] Length = 535 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 228/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 208 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 209 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 268 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 269 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 326 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 327 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P HV N+D P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 386 ATDIAARGIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 444 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 445 AVERVTRSKLSIKDAPVKLAPAPVAK 470 >gi|114561793|ref|YP_749306.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333086|gb|ABI70468.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 421 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 157/425 (36%), Positives = 242/425 (56%), Gaps = 21/425 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADL L P ++ + + Y +PTPIQ++ IP++L DV AQTGTGKTA+F LP+L Sbjct: 1 MSFADLSLHPILINRLAELKYQQPTPIQLQAIPVILSGKDVMAGAQTGTGKTAAFALPLL 60 Query: 61 -TILEKGRARVRMPRT----------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109 +L P T L+L PTRELA QV + E+Y ++T ++ GG Sbjct: 61 HQLLTHQDNLAAQPDTQHINSTPITALVLVPTRELAQQVHSSIEQYAYGSSVTSVMVYGG 120 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 + Q ++L G +L+ TPGR+LD + L ++ + LV DEADRMLDMGF I Sbjct: 121 VSIGEQIRQLANGTHILVATPGRLLDLLRKRALSLSQLTHLVFDEADRMLDMGFKDEIVE 180 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQY 228 + +P TRQTLLFSAT+ D + S L++P+ IEV ++TA +I E F Sbjct: 181 VLKRLPSTRQTLLFSATLDDRMLSFSRRLLRSPQVIEVAQRNTTASSIVERVF---NVDA 237 Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 ++KCA+L L+ +Q++ +IF K+ L +++ G + A H ++ Q R ++L Sbjct: 238 NRKCAMLCHLI-TQESWLQSLIFSRTKQGADALVKQMKQAGVAAEAFHADLSQAVREQVL 296 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 + FK G + +VA+D+AARGLDI ++ +V N ++P + E+Y+HRIGRTGRAG+ G+A TL Sbjct: 297 AAFKAGEVTALVATDVAARGLDINELNYVVNMELPFQVEDYVHRIGRTGRAGKAGQAITL 356 Query: 349 VAKEDIKHIDAIEKLIEKKV--DWLNG---DLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403 ++ +D + +E +++++ WL G DL + P K + + + S Sbjct: 357 LSIDDEPLLTKLEAFLDRRLPQQWLAGFEPDLDLIAPVTRKTTKSALKQQARKKALAASS 416 Query: 404 TGFDR 408 G R Sbjct: 417 RGKKR 421 >gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329] Length = 643 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ IP +L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ + R P+ ++L PTRELA QVA + GKN L V + GG Q + L Sbjct: 66 NKLDLDQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA V++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+ + E FL++P ++V + T + ++ F +K + +LL Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] Length = 408 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 231/373 (61%), Gaps = 6/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +S + ++ +AG+ KPT IQ K+IP +L D+ IAQTGTGKTA+F +P++ Sbjct: 1 MKFNKYNISSGIKRSLEEAGFKKPTDIQFKSIPQILSGQDILAIAQTGTGKTAAFAIPLI 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++LE+ + + P + +++ PTRELA Q+ F GK ++ +IGG+ E Q KK Sbjct: 61 SMLERSKPHLDKPTIKAVVMVPTRELAIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLKK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L + ADVLI TPGRI+D +G L + I+ LV+DEADRML+ GF I+ + +L+P R Sbjct: 121 LNK-ADVLIATPGRIMDLVFKGHLYLKQIDFLVLDEADRMLEQGFYNDIKKLITLLPKRR 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+ FSAT+ D ++ ++ + P RI+++ ++ ++H Y K L++L Sbjct: 180 QTMFFSATINDTIKDLAYALVNKPVRIQLSPKDPVSKNVDHA--VAYVGMDDKRFFLERL 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++ K I+F K + ++E+ IHG+ DQ++R ++L NF++G Q+ Sbjct: 238 IK-ENQGKKIIVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKNQI 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D++ARGLD+ V V N+D+P ENY+HRIGRTGR G+A + ++E+ ++D Sbjct: 297 LIATDISARGLDVKGVDFVVNYDLPEVPENYVHRIGRTGRGTSRGRAVSFCSEEEKAYLD 356 Query: 359 AIEKLIEKKVDWL 371 AI++ I K +D + Sbjct: 357 AIQEYIGKPIDVM 369 >gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase domain-containing protein [Salinispora tropica CNB-440] gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440] Length = 579 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 213/367 (58%), Gaps = 3/367 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL +++ A+ GY +PTPIQ + IP +L D+ G A TGTGKTA+F LPML Sbjct: 23 FVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPMLQR 82 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + R+ P L+L PTRELA QV++ F +YGK V + GG P Q + L+ G Sbjct: 83 MPANRSTTN-PVALVLVPTRELAVQVSEAFHRYGKELGARVLPIYGGQPIGRQLRALDAG 141 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH RG L + ++ +V+DEAD MLDMGF I+ I P RQT+L Sbjct: 142 VDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVL 201 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSATM + ++ L +P RI + A + Y + K A L ++L Sbjct: 202 FSATMPARIDGMARAHLTDPIRILIAREKPVAGEAPRVRQSAYLVSRAHKPAALGRVLDV 261 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+FC ++ V L ++ +G+ A+HG + Q R +++ + GT L+VA Sbjct: 262 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 320 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+DVP+ E+Y+HRIGR GRAGR G A TL + + IE Sbjct: 321 TDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIE 380 Query: 362 KLIEKKV 368 ++ +++ Sbjct: 381 RVTGQRI 387 >gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis KT71] gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis KT71] Length = 604 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 226/372 (60%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L ++ A+ D GY P+ IQ TIP +L+ D+ G AQTGTGKTA+F LP+L Sbjct: 10 FDELQLPVFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ A++ P+ L+L PTRELA QVA+ F+KY ++ V + GG + Q ++L+R Sbjct: 70 LD---AKLAKPQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLRQLQR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGFI ++ I P RQ Sbjct: 127 GVHVIVGTPGRVMDHMRRGSLDLSALKTLVLDEADEMLRMGFIDDVEWILEQTPPERQIA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D ++++++ L P+ I + + T +I + K L ++L++ Sbjct: 187 LFSATMPDAIRRIAQQHLSKPEEITIKLKTVTNASIRQRVWMMGGMH--KLDALTRILET 244 Query: 242 QDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +DT +GII F + L L +G+ A++G+I Q R K + N K+G + ++V Sbjct: 245 EDT--DGIIIFVRTRIATQELADKLAARGYGTAALNGDIPQNLREKTVENLKKGALDILV 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+PN E Y+HRIGRTGRAGR G+A A + + + I Sbjct: 303 ATDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTI 362 Query: 361 EKLIEKKVDWLN 372 E++ +K++ + Sbjct: 363 ERVTGQKIESME 374 >gi|152993022|ref|YP_001358743.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1] gi|151424883|dbj|BAF72386.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp. NBC37-1] Length = 460 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 155/404 (38%), Positives = 238/404 (58%), Gaps = 17/404 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F + V AG+ +P+PIQ IP++ D+ G A TGTGKTA+F LPM+ Sbjct: 1 MNFNQFNFHRDLAKGVKIAGFREPSPIQKMAIPIIEGGKDLVGQAHTGTGKTAAFGLPMM 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L KG + R L++ PTRELA QVAD G+ + + GG+ + Q + Sbjct: 61 DKLAKGE----IERALVITPTRELATQVADELYHLGRFAGIRTLTVYGGVGYGRQIALIH 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G +++ TPGR+ D + +GK+ + N EI+V+DEAD MLDMGF+ I+ I +P RQT Sbjct: 117 KGVQIVVATPGRLKDLYRKGKIDVLNPEIVVLDEADEMLDMGFLDEIKEIFEYIPQNRQT 176 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQL 238 LLFSATM + +++++ + L P+ I V T I + +V Q + +L Sbjct: 177 LLFSATMPEPIKELANHILYQPEFISVVGDEETTNNIIEQRYYVINENQRDEAIV---KL 233 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+++DT K IIFC K+ V L L+ QGF+ +HG+++Q+ R ++ ++ G ++ Sbjct: 234 LETEDTNKC-IIFCRMKREVDRLTEYLQAQGFNASGLHGDLEQQDREVVIKAYRRGETKI 292 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+AARGLD+ DV HVFN+ +P ++Y+HRIGRTGRAG+ G+A TLV E+ + + Sbjct: 293 MVATDVAARGLDVKDVTHVFNYHIPFDPQSYVHRIGRTGRAGKSGQAITLVTTEEFRELQ 352 Query: 359 AIEKLI--EKKVDWLNG----DLSSLNPPLEKI-DIAQHNHARK 395 I+K + + + L G D SSL E+I D+ H A++ Sbjct: 353 RIQKEVGADMHLATLQGGEGLDESSLEYLAEQIRDMPVHKEAKR 396 >gi|294084931|ref|YP_003551691.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664506|gb|ADE39607.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 651 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 149/375 (39%), Positives = 229/375 (61%), Gaps = 7/375 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD L ++ + G V PTPIQ +IPL+L HD+ G+AQTGTGKTA+F+LP++T Sbjct: 19 FADFDLPENMLGTLAREGLVVPTPIQQMSIPLLLLGHDLIGLAQTGTGKTAAFLLPLMTQ 78 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + VR P+ LIL PTRELA Q++ N + + N+ + GG +E Q + L Sbjct: 79 LSYSPS-VRSGQPPKALILAPTRELANQISANLSRLSADMNIRHICVFGGARYEGQIRGL 137 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG D+++ TPGR++D RG + I ++DEAD MLD+GF P +++I++ +P RQ Sbjct: 138 KRGVDIVVATPGRLMDLMERGSFDPSGITHWILDEADHMLDLGFYPAMKHISASLPADRQ 197 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM E++K+ FL +P+R++ TA+ I V A+ K+ L +L Sbjct: 198 TMLFSATMPPEIEKLGNEFLTDPERVKAPQSGITADKITQ-RVTLMAEADKRDRLC-DVL 255 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +DT + +IF K+ L +E +GF+V +HG++ Q R K+L NF++G +Q + Sbjct: 256 NHEDTGQC-LIFVRTKRRADALSKFMEDRGFAVDTLHGDMRQGLRQKVLRNFRDGRLQGL 314 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DI + HV NFD+ + E Y+HRIGRTGRAG G A + + + + A Sbjct: 315 IATDVAARGIDIAGLSHVVNFDLTDTPEAYVHRIGRTGRAGLGGLALSFCSPSEEPRLAA 374 Query: 360 IEKLIEKKVDWLNGD 374 I + +V+ + D Sbjct: 375 IIAAVGPRVELFDMD 389 >gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB 8327] Length = 647 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/370 (38%), Positives = 224/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F L L+ ++ A+ GY PTPIQ TIPL+L+ DV G AQTGTGKTA+F LP L Sbjct: 17 LNFRSLQLAEPLLQALEAVGYETPTPIQANTIPLLLEGRDVLGQAQTGTGKTAAFALPTL 76 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ + P+ L+L PTRELA QVA+ F Y + + V + GG + Q + L Sbjct: 77 SNID---LSLSDPQVLVLAPTRELAIQVAEAFHTYAEFMPDFHVLPIYGGQDYGVQIRML 133 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH +G L ++ ++ LV+DEAD ML MGFI ++ I P +RQ Sbjct: 134 KRGVHVVVGTPGRVMDHMRKGTLNLDGLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQ 193 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM + +++ +L+ P I + ++T ETI + + K L ++L Sbjct: 194 VALFSATMPQPILRIARKYLKAPAEITIQAKTTTVETIRQRYWMVGGHH--KLDALTRIL 251 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + IIF K VNL L+ +G+ A++G++ Q +R + + K+GT+ ++ Sbjct: 252 EVE-PFDGIIIFVRTKTETVNLAEKLQARGYLAAALNGDMVQSARERTIEQLKDGTLNIV 310 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V+ + + A Sbjct: 311 IATDVAARGLDVDRISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLFA 370 Query: 360 IEKLIEKKVD 369 IE+ K++D Sbjct: 371 IERATRKRID 380 >gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii OhILAs] Length = 461 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 151/399 (37%), Positives = 236/399 (59%), Gaps = 12/399 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+ ++V + G V+PTPIQ ++IP+ LQ D+ AQTGTGKT +F+LP+L Sbjct: 4 EFLNLGIIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLPILQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + K + V+ LIL PTRELA Q+ +K K ++ V + GG E Q KL+ Sbjct: 64 KINKNQKDVQ---ALILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKLKG 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR+LDH RG + + + LV+DEAD+ML MGF+ ++ I P RQ + Sbjct: 121 GMHVVIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLM 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 L+SAT+ ++ ++ +++NP I +++ T + I+ V T ++ K+ AL+ + Q Sbjct: 181 LYSATIPKGIRALTNRYMKNPVEIRIHSNKVTLDEIKQLVVETTDRH-KQEALMHMIKQE 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I+FC K+ V L +L ++GFS +HG++ Q R K++ F+ +Q++VA Sbjct: 240 NPFL--AIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQILVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ + HVFN+D+P E YIHRIGRTGRAG G A T A +D + IE Sbjct: 298 TDVAARGIDVEGITHVFNYDIPQDVEGYIHRIGRTGRAGDKGMAITFAAPKDRDSLAMIE 357 Query: 362 KLIEKKVDWLN----GDLSSLNPPLEKIDIAQHNHARKN 396 + I +K+ + G + S+ E+ A+ RKN Sbjct: 358 RGINQKIVKITFKPEGRVESIEETFER--EAKKREERKN 394 >gi|218768385|ref|YP_002342897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491] gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491] gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE 2594] Length = 462 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPEDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAD-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14] gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14] Length = 648 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 11/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA LGLS V+ AV GY P+PIQ TIP +L+ DV G AQTGTGKTA+F LP+L Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKL 119 + ++ + + P+ LIL PTRELA QVA+ F+ Y K V + GG P+ Q L Sbjct: 69 SNIDLQQIK---PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSAL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG +++ TPGR++DH +R L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 126 RRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQ 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++++ +LQ+P + + ++T+ I + + K L ++L Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMH--KLDALTRIL 243 Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + D M IIF K L L+ +G + AI+G++ Q R + ++ KEG + Sbjct: 244 EVEPFDAM---IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A + + Sbjct: 301 ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML 360 Query: 358 DAIEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 361 RQIERATRQPIEEMQ 375 >gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine proteobacterium ANT8C10] Length = 635 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 227/370 (61%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGLS ++ ++ D + KP+ IQ + IP++L ++ AQTGTGKT SFVLPML Sbjct: 1 MSFKELGLSEPILKSLEDLEHTKPSEIQQQAIPVILAGKNIMAAAQTGTGKTGSFVLPML 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L E+ + + L+L PTRELAAQV ++ YGK N+T + GG Q KL Sbjct: 61 EMLHEQAKPYSKNVHALVLTPTRELAAQVRESVHSYGKLTNITSTAVFGGAKIFPQKAKL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G D+L+ TPGR+LD N+ + ++ ++ILV+DEAD MLDMGFI I+ I ++ P TRQ Sbjct: 121 KKGVDILVATPGRLLDLVNQKAVKLDQVQILVLDEADHMLDMGFIHDIKKIIAMTPPTRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + E++K++++ I +P++T I+ + + +KK LL ++ Sbjct: 181 NLLFSATFSPEIKKLAQSLGDGLVEISAQSPNTTVSKIKQ--IVYHVDKNKKSDLLAHMI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++F K + L G IHG+ Q +R K L FK ++++ Sbjct: 239 E-EEQWDQALVFSKTKHGCEKIADYLNAAGIETGTIHGDKTQGARTKALREFKGKFVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI ++ V NFD+P +YIHRIGRTGRAG+ G A +L++ ++ K + Sbjct: 298 VATDVAARGIDISNLPFVVNFDMPTYPNDYIHRIGRTGRAGQEGTAISLMSSDEHKFLRG 357 Query: 360 IEKLIEKKVD 369 IE L++ K+D Sbjct: 358 IEGLLKIKID 367 >gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1] gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea MMB-1] Length = 619 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 150/374 (40%), Positives = 225/374 (60%), Gaps = 15/374 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL+ ++ AV D GY +P+ IQ ++IP +L+ HD+ G AQTGTGKTA+F LP+L+ Sbjct: 10 FDSLGLAAPILKAVADLGYEQPSAIQAQSIPYLLEGHDLLGQAQTGTGKTAAFALPLLSR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ ++ L+L PTRELA QV++ F+ Y +N + V + GG+ ++ Q ++L R Sbjct: 70 IDVTNKSTQL---LVLAPTRELAIQVSEAFQSYARNIPDFHVLPIYGGMSYDTQLRQLRR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH R L ++ ++ LV+DEAD ML MGFI ++ I P QT Sbjct: 127 GVQVVVGTPGRVMDHIRRKTLKLDGLQALVLDEADEMLRMGFIDDVEWILEHTPDGHQTA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS--KKCALLQQLL 239 LFSATM ++KV+ L NPK +++ T +STA TI Y Q S K L ++L Sbjct: 187 LFSATMPPVIRKVANKHLNNPKEVKILTKTSTATTISQ----KYWQVSGIHKLDALTRIL 242 Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D M IIF K V L L +G + A++G+I Q R + + K+G I Sbjct: 243 EMNEHDGM---IIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQID 299 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARGLD+ V HV N+D+P E+Y+HRIGRTGRAGR G A V + + + Sbjct: 300 ILVATDVVARGLDVDRVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVGHRERRML 359 Query: 358 DAIEKLIEKKVDWL 371 IE+ + ++ + Sbjct: 360 QQIERATRQAIERM 373 >gi|190573462|ref|YP_001971307.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a] gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a] Length = 654 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 11/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA LGLS V+ AV GY P+PIQ TIP +L+ DV G AQTGTGKTA+F LP+L Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKL 119 + ++ + + P+ LIL PTRELA QVA+ F+ Y K V + GG P+ Q L Sbjct: 69 SNIDLQQIK---PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSAL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG +++ TPGR++DH +R L ++ ++ LV+DEAD ML MGFI ++ + +P RQ Sbjct: 126 RRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQ 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++++ +LQ+P + + ++T+ I + + K L ++L Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMH--KLDALTRIL 243 Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + D M IIF K L L+ +G + AI+G++ Q R + ++ KEG + Sbjct: 244 EVEPFDAM---IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A + + Sbjct: 301 ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML 360 Query: 358 DAIEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 361 RQIERATRQPIEEMQ 375 >gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3] gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3] Length = 644 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 222/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ IP +L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ + R P+ ++L PTRELA QVA + GKN L V + GG Q + L Sbjct: 66 NKLDLDQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA V++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+ + E FL+ P ++V + T + ++ F +K + +LL Sbjct: 183 RVLFSATMPPMLKNIVERFLREPVTVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|251796178|ref|YP_003010909.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2] gi|247543804|gb|ACT00823.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2] Length = 578 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 143/384 (37%), Positives = 229/384 (59%), Gaps = 10/384 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +G+ P++ + G PTP+Q K IP++L DV AQTGTGKT +F LP+L Sbjct: 4 EFISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPILQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ + +V+ LIL PTRELA Q+ +K V GG +AQ +KL Sbjct: 64 RIDIDKEQVQ---ALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQIRKLNN 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR++DH R + + +++LV+DEAD+ML MGF+P +QNI P RQT+ Sbjct: 121 SPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTM 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D++++++EN+++ P I++ + + T + I+ + T + +K L ++++ Sbjct: 181 LFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKA--LISMIET 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q +IFC K L L+ GF +HG++ Q R +++ F++ +Q++VA Sbjct: 239 QRPYL-AVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHID 358 +D+AARGLD+ V HVFNFDVP +E YIHRIGRTGRAG+ G A T+ + D + HI+ Sbjct: 298 TDVAARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIE 357 Query: 359 -AIEKLIEKKVDWLNGDLSSLNPP 381 +I ++E++ +G + P Sbjct: 358 RSINAILERRTIEADGTIVKNTAP 381 >gi|99080768|ref|YP_612922.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040] gi|99037048|gb|ABF63660.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040] Length = 445 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 231/368 (62%), Gaps = 11/368 (2%) Query: 2 DFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 +F+ + L PK + ++A G+ PTPIQ + IP L DV G+AQTGTGKTA+F +P++ Sbjct: 3 EFSSMDL-PKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLV 61 Query: 61 T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LE GR R LIL PTRELA Q+A+ + L L++GG+ Q + Sbjct: 62 AQMLEYGRKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQIHR 121 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD +R L + + + LV+DEAD+MLD+GFI ++ I +L+P R Sbjct: 122 LSKGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEER 181 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQ 236 QT+LFSATM ++ +++ +L++P RIEV P A + F+A ++K +LL+ Sbjct: 182 QTMLFSATMPKQMNEIANAYLKSPVRIEVTPPGKPAAKVTQSVHFIAK----AEKLSLLK 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +LL + D + ++F K + L L+K GF AIHGN Q R + L FK G I Sbjct: 238 ELLSAHDGERT-LVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDIPDV +V+N+++PN + Y+HRIGRT RAG+ G+A A ++I Sbjct: 297 TVLVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGD 356 Query: 357 IDAIEKLI 364 + AI+K + Sbjct: 357 LKAIQKTM 364 >gi|255037844|ref|YP_003088465.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254950600|gb|ACT95300.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM 18053] Length = 445 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 150/420 (35%), Positives = 250/420 (59%), Gaps = 15/420 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L+ +++ A+ +AGY +PTPIQ + IP+ L D+ GIAQTGTGKTA++ LP+L Sbjct: 8 FEQFKLNRQLLNAIEEAGYTEPTPIQEQAIPVALAGQDILGIAQTGTGKTAAYTLPLLMR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + + PR LIL PTRELA Q+++ + K ++ +L GG+ + Q + + +G Sbjct: 68 IKYAQGQ--HPRALILAPTRELAMQISEAIAQLSKYTDIRTVVLYGGVGPKTQIEAIRKG 125 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR +D + + ++++ ++ ++V+DEAD+M+DMGF+P I+ + ++P RQ +L Sbjct: 126 VDIIVATPGRFMDLYFQEEIVVKHLNVMVLDEADKMMDMGFMPQIRKLLEVIPRKRQNML 185 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT + +++ +S FL+ P RIEV TP +TA + + + K LL LL+ + Sbjct: 186 FSATFSGKVENLSYEFLEFPTRIEV-TPQATAAEMVTQVLYEVPNFRTKINLLSYLLEDK 244 Query: 243 DTMKNGIIFCNQKKNVVNLCHS--LEK--QGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + ++F + + V L H L + + IH N Q +R+ + F+EG +++ Sbjct: 245 EALTRVLVFT-RSREVAGLVHQNLLNRVVPEAELRVIHANKGQNTRINAMEAFREGNVRV 303 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+ ARG+DI +V HV NFDVP E+Y+HRIGRTGRA G A T + D HI Sbjct: 304 MVATDVVARGIDITEVSHVVNFDVPLIYEDYVHRIGRTGRANNVGNAITFMTIADEYHIR 363 Query: 359 AIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQH--NHARKNNPIPQKSTGFDRRKKNY 413 IE +I ++ ++ + + P E+ D+ + N RK +P + + F +K Y Sbjct: 364 KIEAMIRMEIPRAEFPDDVYIAETPFQERQDMLREIDNQRRKEDPTFKGA--FHEKKHGY 421 >gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681] gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681] Length = 559 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 145/363 (39%), Positives = 221/363 (60%), Gaps = 6/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FA LG+ V A+ + G PTP+Q ++IPL+++ DV A TGTGKT +F+LP+L Sbjct: 13 NFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 72 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L + R P+ L++ PTRELA Q+ + + +L++ + GG E Q +KL+ Sbjct: 73 KLNLDK---RHPQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLRKLK 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA ++I TPGR+LDH RG L + I++LV+DEAD+ML MGF+ ++ I VP+ RQT Sbjct: 130 GGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++K++ ++ P ++V + SS + V K+ AL+ L Sbjct: 190 MLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDML-- 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D +IFC K+ L L++ GF +HG++ Q R +++ F+E +QL+V Sbjct: 248 NTDRPYLAVIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLV 307 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P AE+YIHRIGRTGRAG G A TL D+ + I Sbjct: 308 ATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNI 367 Query: 361 EKL 363 +++ Sbjct: 368 QRV 370 >gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio vulgaris DP4] gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4] Length = 532 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 221/370 (59%), Gaps = 11/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L +++ A+ + G+ +P+PIQ IP +L+ DV G AQTGTGKTA+F LP+L Sbjct: 7 FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ A R + L+L PTRELA QVA+ K+ + + + GG P E Q L R Sbjct: 67 ID---AADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH NRG L + + + V+DEAD MLDMGF I+ I S +P Q+ Sbjct: 124 GAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM D + +++ FL+ P+ + V T E + V + + C + + Sbjct: 184 FFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAYI 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + I+F K+ V L +L+++G A+HG+++Q R +++S F+ G I ++ Sbjct: 244 P-----RKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ DV V NFD+PN E Y+HRIGRTGRAGR G+AF+ A D+ + Sbjct: 299 VATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGQAFSFAAGRDVYKLRD 358 Query: 360 IEKLIEKKVD 369 I+++ ++D Sbjct: 359 IQRVTGSRID 368 >gi|262392485|ref|YP_003284339.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25] gi|262336079|gb|ACY49874.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25] Length = 459 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 225/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +GL+P ++ + Y TPIQ ++P +L+ DV G +TG+GKTA+F L +L+ Sbjct: 6 FDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH +G++ ++ + LV+DEADRMLDMGF + I P RQTL Sbjct: 123 GAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++++++ +Q P+ I+V + T+ +H F ++ AL LL Sbjct: 183 LFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQH-FYKVEGSEARDEALANLLLTH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V ++ L ++GFSV IHG+++QR R + L F ++ ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++D + IE Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359 Query: 362 KLIEKKV 368 + +E V Sbjct: 360 EYLEMDV 366 >gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7] gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7] Length = 374 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 221/368 (60%), Gaps = 12/368 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L KV+ A+ G+ +P+ IQ + IP++L +D+ G AQTGTGKT +F P+L+ Sbjct: 6 FSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVLSQ 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E L+L PTRELA QV D + K + + GG P + Q K L RG Sbjct: 66 IESSDK----ISALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRRG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGRILDH R L ++ + LV+DE+D ML+MGFI I+ I + RQTLL Sbjct: 122 VDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTLL 181 Query: 183 FSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM E+ K++ +++N K I++ S T E I+ + V ++ C +L Sbjct: 182 FSATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRIL---- 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + IIFC K+ V L S++ +G++V +HG++ Q R+ L FKEGT+ + Sbjct: 238 -DIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV HV N+D+P E+Y+HRIGRTGRA + G A++LV + I Sbjct: 297 VATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQ 356 Query: 360 IEKLIEKK 367 +EK +++ Sbjct: 357 LEKFTKRQ 364 >gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii] gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii] Length = 576 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 145/370 (39%), Positives = 218/370 (58%), Gaps = 10/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++ + GY +PTPIQ + IP +L+ D+ G A TGTGKTA+F LP+L Sbjct: 21 FAALGLEASLLTTLEALGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQR 80 Query: 63 LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G R R P L+L PTRELA QV++ ++YGK + V L GG Q + L R Sbjct: 81 IAHGPRQR---PTALVLVPTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQALRR 137 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +V++ TPGR LDH R L + +++++V+DEAD MLDMGF + I P +QT Sbjct: 138 GVEVIVATPGRALDHLRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQTA 197 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN---TPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSATM + ++ L+NP + + + A ++ Q+ K + L ++ Sbjct: 198 LFSATMPPRIASIARRHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQH--KVSALARV 255 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L T K+ ++FC + V + +L +G+ AIHG + Q R +++ F+ G +L Sbjct: 256 LDIA-TPKSALVFCRTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTEL 314 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP V HV N+D+P+ E Y+HRIGRTGRAGR G A T++ + + + Sbjct: 315 LVATDVAARGLDIPSVSHVINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPREQRLLR 374 Query: 359 AIEKLIEKKV 368 A+E+ + K+ Sbjct: 375 AVEQHTKAKI 384 >gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni ACN14a] gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni ACN14a] Length = 608 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/395 (36%), Positives = 226/395 (57%), Gaps = 16/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L P+++ ++ GY +PTPIQ + +P ++ D+ G A TGTGKTA+F LP+L Sbjct: 59 FAELALRPELLRSLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKTAAFALPLLHR 118 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L R P+ L+L PTRELA QV++ +YG++ V + GG P Q + L +G Sbjct: 119 LTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIGRQVRALVQG 178 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH RG L ++ + +V+DEAD MLDMGF I I P RQT+L Sbjct: 179 VDVVVATPGRALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVL 238 Query: 183 FSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSAT+ + +++ L++P RI++ P A + V+ + K A L ++L Sbjct: 239 FSATLPPRMDQIARRHLRDPVRIQIGRAAPEPGAAPLVRQ-VSYVVPRAYKTAALGRILD 297 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++ I+FC ++ V L SL +G+ ++HG + Q R +++ + T L+V Sbjct: 298 VE-SPRSAIVFCRTREEVDQLADSLNGRGYRAESLHGGMSQEQRERVMERLRTATADLLV 356 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD + HV N+ VP+ ++Y+HRIGR GRAGR G A TL + + + I Sbjct: 357 ATDVAARGLDFEQLTHVVNYSVPSAPDSYVHRIGRVGRAGREGVAITLAEPREHRMLKTI 416 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 E++ +++ +EK+ HAR+ Sbjct: 417 ERVTRQRI------------AVEKVPTVADLHARR 439 >gi|237510128|ref|ZP_04522843.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein [Burkholderia pseudomallei MSHR346] gi|235002333|gb|EEP51757.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein [Burkholderia pseudomallei MSHR346] Length = 465 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 225/393 (57%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PK++++ ++ + + T + LL + Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKKVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF V A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E Y+HRIGRTGRA + G A +L + ++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362 Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387 + + ++V+W GD + L PP+E + I Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394 >gi|254176272|ref|ZP_04882930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei ATCC 10399] gi|160697314|gb|EDP87284.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei ATCC 10399] Length = 476 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 21 FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 80 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 81 LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 137 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 138 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 197 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PKR+++ ++ + + T + LL + Sbjct: 198 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 257 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 258 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 313 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E Y+HRIGRTGRA + G A +L + ++ + IE Sbjct: 314 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 373 Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387 + + ++V+W GD + L PP+E + I Sbjct: 374 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 405 >gi|319408783|emb|CBI82440.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1] Length = 454 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 154/369 (41%), Positives = 225/369 (60%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LG+ + + AG KP PIQ + IP++L++ D+ GIAQTG+GKT +F LP+L+ Sbjct: 8 FIKLGIPTLLTENLFIAGINKPKPIQKQAIPVMLKKRDILGIAQTGSGKTLAFGLPVLSQ 67 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G R + R LIL PTRELA Q+ ++ K +L+ L++GG+ AQ K+++ Sbjct: 68 ILALGDKRYPKTARALILVPTRELAVQIEESIRMVAKGSHLSTCLILGGVSRFAQIKRMK 127 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR++D + + ++ LV+DEADRMLDMGFI +Q I L+ RQT Sbjct: 128 TGVDVLIATPGRLMDLVSEKCIDLSQSRFLVLDEADRMLDMGFIRDVQRIAKLLHEKRQT 187 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++N L P +IE+ + A I S+K ++L + L Sbjct: 188 ALFSATMPREIVTLAKNLLNEPVKIEIVPQGTVATKITQKLYCV--PTSEKKSVLNKFL- 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + IIF K + SL K G+SV AIHGN +R + L F+EG++ ++V Sbjct: 245 TDPALASVIIFTRTKHGADAVARSLTKAGYSVAAIHGNKSHAARQRALKAFREGSVGILV 304 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359 A+D+AARG+D+P V HV N+D+P+ AENY+HRIGRTGR G A TL K + + A Sbjct: 305 ATDIAARGIDVPGVSHVINYDLPDEAENYVHRIGRTGRNDTSGNAITLFDEKVEQVRLRA 364 Query: 360 IEKLIEKKV 368 +E++I K+ Sbjct: 365 VERVIRMKL 373 >gi|218780301|ref|YP_002431619.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761685|gb|ACL04151.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum alkenivorans AK-01] Length = 430 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 234/371 (63%), Gaps = 10/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F + G V + AGY PTPIQ K IP V+Q D+ G+AQTGTGKTA+FVLP+L Sbjct: 1 MNFTNFGFHKHVAAGISAAGYSTPTPIQEKAIPQVMQGRDLMGLAQTGTGKTAAFVLPIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++K VR LI+ PTRELA Q + G + NL + GG+ + Q K+L Sbjct: 61 HRLMQKPGNGVR---ALIIAPTRELAEQTHEAINTLGAHTNLKSVSVYGGVNLQRQVKQL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178 ++ +D+++ PGR+LDH R + ++ +E+LV+DEAD+M DMGF+P I+ I + +P R Sbjct: 118 KQ-SDIVVACPGRLLDHIGRKNVDLSRVEMLVLDEADQMFDMGFLPDIRKILTFLPRKGR 176 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL+FSATM ++++++ L N +++ + A+T++H F AQ+ K ALL QL Sbjct: 177 QTLMFSATMPAQIKRLAGEVLHNHVLVQIGH-VAPADTVKHAFYPV-AQHLK-TALLLQL 233 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L S T ++ ++F K L + L K GFS ++ GN+ Q R+ ++ FK G Q+ Sbjct: 234 LGSTGT-ESVLVFTRTKYKAKQLGNKLTKAGFSSASLQGNLSQSRRVDAMNGFKSGKYQV 292 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ +V HV N+D+P+ E Y+HRIGRTGRA R G+AFT + +D + + Sbjct: 293 LVATDIAARGIDVANVSHVINYDMPSTPETYMHRIGRTGRAKRRGEAFTFITNDDRQMVR 352 Query: 359 AIEKLIEKKVD 369 A+ + + V+ Sbjct: 353 AVNRAVGSNVE 363 >gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 408 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 152/364 (41%), Positives = 221/364 (60%), Gaps = 16/364 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F ++GL + A+ PTPIQI+ IPL LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFHEMGLPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVA 62 Query: 62 ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNK 117 L + P T L++ PTRELA QV + K +N L VALLIGG P Q Sbjct: 63 KL------LNEPNTGSALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLN 116 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L++ ++I TPGRI+DH R L+ N+ +LV+DE DRM DMGF I+ I +P Sbjct: 117 QLQKKPQIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKI 176 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC-ALLQ 236 RQTL+FSAT+ ++ K++E +L P+RI V+ ++T+ I+ V YA S+K L+ Sbjct: 177 RQTLMFSATLPGDIVKLAEKYLNRPERISVDCEATTSVKIKQEIV--YASESEKYEKLVT 234 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL Q + ++ IIF K+ L + L K +S AIHG++ Q R +++++F+ G Sbjct: 235 QLCQREGSI---IIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRN 291 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q+MVA+D+A+RGLDIP + HV N+D P +YIHRIGRT RAG G A + V +D + Sbjct: 292 QIMVATDVASRGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRR 351 Query: 357 IDAI 360 + A+ Sbjct: 352 LPAL 355 >gi|94676631|ref|YP_589051.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219781|gb|ABF13940.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 591 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/366 (39%), Positives = 229/366 (62%), Gaps = 11/366 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA +GL+ ++ A+ D GY P+PIQ + IP +L DV GIAQTG+GKTA+F LP+L Sbjct: 8 FAKMGLNILLLNALKDLGYETPSPIQAECIPHLLAGRDVLGIAQTGSGKTAAFALPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++ P+ L+L PTRELA QV++ +F KY K N V L GG ++ Q + L Sbjct: 68 IN---LKLNAPQVLVLAPTRELAVQVSEAYSDFAKYMKGIN--VVALYGGQRYDVQLRLL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G+ V++ TPGR+LDH RG L ++++ LV+DEAD ML MGFI ++NI + +P Q Sbjct: 123 RQGSQVIVGTPGRLLDHLKRGTLDLSHLHGLVLDEADEMLRMGFIEDVENILAQIPAKHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F+ PK + + + + I + + + K L + L Sbjct: 183 TALFSATMPEAIRRITRRFMTEPKEVHIESNIANRPDISQSYWTVHGRCKNKA--LARFL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D IIF K + + SLE+ G++ A++G+++Q R + LS K G++ ++ Sbjct: 241 EVED-FDAAIIFVRTKNATLEVSQSLEQNGYNSAALNGDMNQALREQTLSRLKNGSLDVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + V N+D+P +E+YIHRIGRTGRAGR G+A V + + + + Sbjct: 300 IATDVAARGLDVDRISLVVNYDIPLDSESYIHRIGRTGRAGRAGRALLFVEQRERRLLRN 359 Query: 360 IEKLIE 365 IE+L++ Sbjct: 360 IERLMK 365 >gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1] gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum WM1] Length = 471 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 231/371 (62%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL + P ++ A+ Y+ PTPIQ + IP++L D+ G AQTGTGKTA+F +P + Sbjct: 1 MQFKDLNIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTI 60 Query: 61 TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L ++ + R LI+ PTRELA Q+ ++F YGK +L ++ GG+ + Q + Sbjct: 61 QLLREEKESHGAKQNIRALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEE 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL++ D+L+ TPGR+L ++ + +++I+IL++DEADRMLDMGFI ++ I + P Sbjct: 121 KLKQRVDILVATPGRLLALIDQKIVNIDHIKILILDEADRMLDMGFIHDVKKIIARTPLK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSATM ++ K++ L+ P +IE+ SST +TI + S K LL Sbjct: 181 KQTLLFSATMPPDIAKLAGTILKAPAKIEITPVSSTVDTIGQYVY--FVDKSNKKDLLLH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ + + + ++F K L L + AIHG+ Q +R L+NFK +++ Sbjct: 239 VLKDNNIV-SALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+DI ++ HV N+D+P+ E Y+HRIGRTGRAG G A + ++ + + Sbjct: 298 ILIATDIAARGIDIDELTHVINYDLPDIPETYVHRIGRTGRAGLGGTAISFCDYDEKEQL 357 Query: 358 DAIEKLIEKKV 368 + IE+LI KK+ Sbjct: 358 NDIERLIGKKI 368 >gi|225627526|ref|ZP_03785563.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo] gi|225617531|gb|EEH14576.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo] Length = 549 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 228/386 (59%), Gaps = 8/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LG++ ++ V AG +P PIQ + IP L+ D+ GIAQTG+GKTA+F LP+L Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162 Query: 62 ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+ G + R + R LIL PTRELA Q+ K+ +++ AL++GG+ +Q K++ Sbjct: 163 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIA 222 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D G + ++ LV+DEADRMLDMGFI ++ I RQT Sbjct: 223 PGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQT 282 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++E L++P R+EV +TA I V +K LL +L Sbjct: 283 ALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQ--VVHPVPTKEKRRLLSAMLT 340 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M++ I+F K + LE+ + V AIHGN Q +R + L+ F++GT++++V Sbjct: 341 DAD-MRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILV 399 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV--AKEDIKHID 358 A+D+AARG+D+P HV N+D P+ E Y+HRIGRTGR G G + TL A E+ K + Sbjct: 400 ATDIAARGIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESK-LR 458 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 A+E++ K+ + + P+ K Sbjct: 459 AVERVTRSKLSIKDAPVKLAPAPVAK 484 >gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3] gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3] Length = 609 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 223/371 (60%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L ++ A+ D GY P+ IQ TIP +L+ D+ G AQTGTGKTA+F LP+L Sbjct: 10 FDELQLPAFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ ++ P+ L+L PTRELA QVA+ F+KY ++ V + GG + Q ++LER Sbjct: 70 LD---PKLSKPQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLRQLER 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L ++ + LV+DEAD ML MGFI ++ I P RQ Sbjct: 127 GVHVIVGTPGRVMDHMRRGSLNLSALTTLVLDEADEMLRMGFIDDVEWILEQTPPKRQIA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D ++++++ L P+ I + + T +I + K L ++L++ Sbjct: 187 LFSATMPDAIRRIAKQHLNKPEEITIKLKTVTNASIRQRVWMMGGMH--KLDALTRILET 244 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +DT IIF + L L +G++ A++G+I Q R K + N K+G + +++A Sbjct: 245 EDT-DGVIIFVRTRIATQELADKLSARGYATAALNGDIAQNQREKTVENLKKGGLDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+PN E Y+HRIGRTGRAGR G+A A + + + IE Sbjct: 304 TDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTIE 363 Query: 362 KLIEKKVDWLN 372 ++ +K++ + Sbjct: 364 RVTGQKIESME 374 >gi|134277372|ref|ZP_01764087.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305] gi|226198998|ref|ZP_03794561.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9] gi|134251022|gb|EBA51101.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305] gi|225929098|gb|EEH25122.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9] Length = 513 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 42 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 102 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 161 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 162 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 282 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 335 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 336 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 395 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 396 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 425 >gi|126453899|ref|YP_001066782.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a] gi|237812839|ref|YP_002897290.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346] gi|242315830|ref|ZP_04814846.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b] gi|254179293|ref|ZP_04885892.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655] gi|254189321|ref|ZP_04895832.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237] gi|254198045|ref|ZP_04904467.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13] gi|126227541|gb|ABN91081.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a] gi|157937000|gb|EDO92670.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237] gi|169654786|gb|EDS87479.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13] gi|184209833|gb|EDU06876.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655] gi|237504437|gb|ACQ96755.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346] gi|242139069|gb|EES25471.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b] Length = 513 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 42 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 102 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 161 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 162 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 282 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 335 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 336 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 395 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 396 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 425 >gi|167855120|ref|ZP_02477892.1| intracellular septation protein A [Haemophilus parasuis 29755] gi|167853755|gb|EDS24997.1| intracellular septation protein A [Haemophilus parasuis 29755] Length = 603 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 229/370 (61%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL ++ +V + G+V P+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LTFADLGLPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + R P+ L++ PTRELA QVAD E++ KN + + GG ++ Q + L Sbjct: 66 AQIDPEQ---RHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G V++ TPGRILDH RG L ++ ++ +V+DEAD ML MGFI ++ + + +P Q Sbjct: 123 KNGVQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPEDHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + ++++++ F+++P+ +++ +A I + + K ALL+ L Sbjct: 183 TALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNG-FRKNDALLRFL- 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + IIF K +++ E+ G+ A++G++ Q++R + L K G + ++ Sbjct: 241 -EVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVI 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 300 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKN 359 Query: 360 IEKLIEKKVD 369 IE LI+K +D Sbjct: 360 IEHLIKKPID 369 >gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114] gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114] Length = 464 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQK 64 Query: 63 LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ + +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYIARKL 369 >gi|167614869|ref|ZP_02383504.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis Bt4] Length = 465 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + L P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T + LL + + Sbjct: 187 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362 Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387 + + + V+W L D + L PP+E + I Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQI 394 >gi|53721181|ref|YP_110166.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei K96243] gi|121596589|ref|YP_990560.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1] gi|126458103|ref|YP_001074245.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1106a] gi|162210105|ref|YP_336816.2| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1710b] gi|166999117|ref|ZP_02264963.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei PRL-20] gi|167722070|ref|ZP_02405306.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei DM98] gi|167741069|ref|ZP_02413843.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 14] gi|167818249|ref|ZP_02449929.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 91] gi|167826638|ref|ZP_02458109.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 9] gi|167848158|ref|ZP_02473666.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei B7210] gi|217422828|ref|ZP_03454330.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 576] gi|226198779|ref|ZP_03794343.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|242313771|ref|ZP_04812788.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1106b] gi|254182850|ref|ZP_04889443.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1655] gi|254189582|ref|ZP_04896092.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia pseudomallei Pasteur 52237] gi|254264638|ref|ZP_04955503.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1710a] gi|254299641|ref|ZP_04967090.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia pseudomallei 406e] gi|52211595|emb|CAH37590.1| ATP-independent RNA helicase [Burkholderia pseudomallei K96243] gi|121224387|gb|ABM47918.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1] gi|126231871|gb|ABN95284.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1106a] gi|157809522|gb|EDO86692.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia pseudomallei 406e] gi|157937260|gb|EDO92930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia pseudomallei Pasteur 52237] gi|184213384|gb|EDU10427.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1655] gi|217393736|gb|EEC33756.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 576] gi|225929219|gb|EEH25242.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|242137010|gb|EES23413.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1106b] gi|243064681|gb|EES46867.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei PRL-20] gi|254215640|gb|EET05025.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1710a] Length = 465 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PKR+++ ++ + + T + LL + Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E Y+HRIGRTGRA + G A +L + ++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362 Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387 + + ++V+W GD + L PP+E + I Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394 >gi|251796764|ref|YP_003011495.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2] gi|247544390|gb|ACT01409.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2] Length = 477 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 138/357 (38%), Positives = 220/357 (61%), Gaps = 6/357 (1%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 LS ++ A+ G+ PT +Q K IP+ L++ D+ +QTG+GKTA++ +P+ ++E Sbjct: 7 LSKEITTALSSLGFDTPTEVQAKVIPIALEKRDLVVKSQTGSGKTAAYGIPLCELVEWNE 66 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127 + P+ LIL PTRELA QV ++ G+ + L G PF Q +L++ +++ Sbjct: 67 NK---PQALILTPTRELAVQVTEDITNIGRFKRIKATALYGKSPFHIQRAELKQRTHMVV 123 Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187 TPGR+LDH RG L ++ + LVIDEAD ML+MGFI +Q+I +P R T+LFSAT Sbjct: 124 GTPGRVLDHIERGTLALDKLAYLVIDEADEMLNMGFIEQVQSIIQALPKGRVTMLFSATF 183 Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247 +++ K+S ++ +P +IE+ T TIEH + + + K ALLQ +L ++ + Sbjct: 184 PEDVAKLSRRYMDSPAQIEIQASGLTTATIEHSLIE--VKEADKLALLQDVLVVENP-DS 240 Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307 IIFC ++NV L S+ + + IHG ++Q R ++++ F+ G + ++A+D+AAR Sbjct: 241 CIIFCRTQENVDKLFRSMAELDYPCDRIHGGLEQEERFEVMNAFRRGQFRYLIATDVAAR 300 Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 G+DI ++ HV N+D+P E+Y+HR GRTGRAG++GKA T +A D K + IE I Sbjct: 301 GIDITNITHVINYDIPLEKESYVHRTGRTGRAGKNGKAITFLAPNDGKRLAEIEDYI 357 >gi|161723115|ref|YP_438416.2| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264] Length = 465 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + L P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T + LL + + Sbjct: 187 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362 Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387 + + + V+W L D + L PP+E + I Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQI 394 >gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6] gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6] Length = 594 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 145/348 (41%), Positives = 218/348 (62%), Gaps = 8/348 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +++ AV D G+ +P+PIQ+ IP +L D G AQTGTGKTA+F LP+L Sbjct: 5 FTELGLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPILEK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 + G++ + L+L PTRELA QV++ K ++V + GG P E Q + L + Sbjct: 65 IASGKS----VQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRALAK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L +N I+V+DEAD MLDMGF I+ I P Q + Sbjct: 121 GAQVVVGTPGRVIDHLQRGTLRLNEARIVVLDEADEMLDMGFREDIELILEQSPADCQRV 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++S+ FL+ P+ + + T IE + Y K AL + +L S Sbjct: 181 LFSATMPQPIRELSKRFLREPEMLTIAHKMLTVPAIEQVYYEVRP-YQKMDALCR-VLDS 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + ++FC K++V + L+++G+ +HG+++Q R +++S F+ I+++VA Sbjct: 239 QG-FRKALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +D+AARG+D+ DV V N+D+P+ E Y+HRIGRTGRAGR GKAFT V Sbjct: 298 TDVAARGIDVDDVDAVINYDIPHDVEGYVHRIGRTGRAGREGKAFTFV 345 >gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] Length = 566 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 150/361 (41%), Positives = 216/361 (59%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ A+ + GY P+PIQ TIP +L DV G+AQTGTGKTA+F LP+L+ Sbjct: 10 FHDLGLGSPVLRALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAFALPILSR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ AR + L+L PTREL QVA+ F +Y + L V + GG + Q R Sbjct: 70 ID---ARSTATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVYGGQAYAPQLAGFRR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L + + +LV+DEAD ML MGF + I + P +Q Sbjct: 127 GAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++S +L++P I V + TA F+ T A K AL + L Sbjct: 187 LFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFL-TVAGPRKMDALTRVL--E 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K ++ L +GF+ AI+G++ Q R K+++ ++GT+ L+VA Sbjct: 244 VEPFEAMIIFVRTKSATEDVAERLRSRGFATEAINGDLSQPQREKLIAQLRDGTLDLLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A LV + + AIE Sbjct: 304 TDVAARGLDVERITHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAIE 363 Query: 362 K 362 K Sbjct: 364 K 364 >gi|134292614|ref|YP_001116350.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4] gi|134135771|gb|ABO56885.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4] Length = 465 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 229/392 (58%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GYV TPIQ ++P+ L HD+ A+TG+GKTA+F L +L+ Sbjct: 9 FSALPLTPATLANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ +IL PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LDARRFDVQ---AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L ++ + LV+DEADRMLDMGF I + + P TRQTL Sbjct: 126 GAHVVVGTPGRIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIVKVARMCPATRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T +++ + QLL Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLAERHDDSKIRQRFYEVT---DTERLHAVGQLLNH 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361 Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDI 387 + ++ V+W + D +L PP+E + I Sbjct: 362 QAQKRDVEWHSLAELKPADEGTLLPPMETLQI 393 >gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886] gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886] Length = 618 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L+ ++ A+ G+V PTPIQ +IPL++ D G AQTGTGKTA+F LP+L Sbjct: 7 EFRQLDLAENILSALDAIGFVSPTPIQAASIPLLMTGVDALGKAQTGTGKTAAFSLPLLN 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L+ G+ R P+ +++ PTRELA QVA + G+ + L V + GG Q + L Sbjct: 67 KLDLGQ---RKPQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYGGASIVDQMRALR 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+ D NR +L ++ + V+DEAD ML MGF+ + I P + Q Sbjct: 124 AGAHIVVGTPGRVKDLINRERLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQR 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++++ + FL+ P RI+V + T E +E F +K + +LL+ Sbjct: 184 VLFSATMPPMVKEIVDRFLREPARIDVAGSNRTVEKVEQQFWVVKG--VEKDEAMSRLLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++T I+F +++ L L +GF A+HG+I Q R + + + K G I ++V Sbjct: 242 TEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + I Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI 360 Query: 361 EKLIEKKVD 369 E++ +++ Sbjct: 361 ERVTSTRME 369 >gi|167913398|ref|ZP_02500489.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 112] Length = 465 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PKR+++ ++ + + T + LL + Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E Y+HRIGRTGRA + G A +L + ++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362 Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387 + + ++V+W GD + L PP+E + I Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394 >gi|308071529|ref|YP_003873134.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681] gi|305860808|gb|ADM72596.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681] Length = 481 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 141/362 (38%), Positives = 220/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++V A+ GY PT IQ + IP+ L++ D+ +QTG+GKTA++ +P+ + Sbjct: 6 FTDYALSEEIVRALSSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPICEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + P+ LIL PTRELA QV ++ G+ + L G PF Q +L++ Sbjct: 66 VDWNENK---PQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELKQR 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V + TPGR+LDH RG L ++ I LVIDEAD ML+MGFI +Q+I +P R T+L Sbjct: 123 THVAVGTPGRVLDHIERGTLSLDRIAYLVIDEADEMLNMGFIEQVQSIIQALPSDRVTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT +++ +S ++ +P +IE+ T TI+H + + S K ALLQ LL + Sbjct: 183 FSATFPEDVATLSRKYMNDPVKIEIKATGITTATIDHSLIQ--VKESDKLALLQDLLIVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV L +L + IHG ++Q R ++++ F+ G + ++A+ Sbjct: 241 NP-DSCIIFCRTQENVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG+ GKA +L+ +D + + IE Sbjct: 300 DVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAISLITPKDGRRLADIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326] gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326] Length = 646 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 145/368 (39%), Positives = 225/368 (61%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+ ++ A+ G+V PTPIQ +IP +++ D G AQTGTGKTA+F LP+L Sbjct: 8 FSDLALNDSILSALEGMGFVSPTPIQAASIPHLMEGVDALGKAQTGTGKTAAFSLPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L+ G+ R P+ ++L PTRELA QVA + G+N + L V + GG Q + L+ Sbjct: 68 LDLGQ---RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALKH 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ D NR +L ++ + V+DEAD ML+MGF+ + I P + Q + Sbjct: 125 GAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM L+ + E FL+ P I+V + T + +E F +K + +LL++ Sbjct: 185 LFSATMPPMLKNIVERFLREPVTIDVAGKNHTVDKVEQQFWVVKG--VEKDEAMSRLLET 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + I+F +++ L L +GF A+HG+I Q R + + + K+G I ++VA Sbjct: 243 EETDAS-IVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV ++ + IE Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIE 361 Query: 362 KLIEKKVD 369 ++ + ++ Sbjct: 362 RVTKSSME 369 >gi|254195234|ref|ZP_04901662.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei S13] gi|169651981|gb|EDS84674.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei S13] Length = 465 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDTRRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PKR+++ ++ + + T + LL + Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E Y+HRIGRTGRA + G A +L + ++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362 Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387 + + ++V+W GD + L PP+E + I Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394 >gi|124381735|ref|YP_001025050.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10229] gi|126447168|ref|YP_001079394.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10247] gi|254356161|ref|ZP_04972438.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280] gi|126240022|gb|ABO03134.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei NCTC 10247] gi|148025144|gb|EDK83313.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280] gi|261826475|gb|ABN00540.2| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei NCTC 10229] Length = 463 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PKR+++ ++ + + T + LL + Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E Y+HRIGRTGRA + G A +L + ++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362 Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387 + + ++V+W GD + L PP+E + I Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394 >gi|148825485|ref|YP_001290238.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE] gi|229846320|ref|ZP_04466428.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1] gi|89892371|gb|ABD78963.1| HI0231-like protein [Haemophilus influenzae] gi|148715645|gb|ABQ97855.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE] gi|229810413|gb|EEP46131.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1] Length = 613 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 230/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E++ K + + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGSRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +PK +++ + A IE C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIEQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|329900791|ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] gi|327549380|gb|EGF33948.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 468 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 231/393 (58%), Gaps = 29/393 (7%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL V+ A+ ++GY+KPT +Q + IP ++ D+ +QTG+GKTA+F+LP L Sbjct: 1 MTFEALGLHTSVIKALTESGYIKPTSVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPAL 60 Query: 61 -----------------------TILEKG---RARVRMPRTLILEPTRELAAQVADNFEK 94 + L +G R + P+ L+L PTRELA QV +K Sbjct: 61 HKFATAAELQLADSSKTPNQEKQSALARGERPRFKAAQPKMLVLTPTRELALQVTTATDK 120 Query: 95 YGKNYNLTVAL-LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153 YG A+ ++GG+P+ Q + L + ++L+ TPGR++DH GK+ + +EILV+D Sbjct: 121 YGSQMRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLD 180 Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213 EADRMLDMGFI I+ I + P +RQT+LFSAT+ + +++ +NP I++ ++ Sbjct: 181 EADRMLDMGFIDDIEKIVAATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATK 240 Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273 E I V S K LL LL+ + TM ++F K++ + L GF+ Sbjct: 241 HENISQR-VHFVDDLSHKNRLLDHLLRDE-TMDQAVVFTATKRDADTIADRLNIAGFAAA 298 Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333 A+HG++ Q +R + L + G ++++VA+D+AARG+D+P + HVFN+D+P E+Y+HRI Sbjct: 299 ALHGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 358 Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 GRTGRAGR+G A +LV + ++ IE+ ++ Sbjct: 359 GRTGRAGRNGIAVSLVNHAEGINVKRIERFTKQ 391 >gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC 15579] gi|187772242|gb|EDU36044.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC 15579] gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065] Length = 524 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 146/385 (37%), Positives = 240/385 (62%), Gaps = 9/385 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F +L L+ V+ A+ G+ P+ IQ K+IP+VL+ DV AQTGTGKT +F P++ Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 T+ ++G+ + + L+L PTRELA Q+ D ++ K V + GG E Q K ++ Sbjct: 65 TLCDEGKKK--GVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+++ TPGR+LDH NR L + I+ LV+DEAD ML+MGFI I+ I + P +QT Sbjct: 123 SGVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMASTPEEKQT 182 Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++K++ N+++ + + I + S T + I + A + K + +++ Sbjct: 183 MLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFA--VKNKDKLEAICRII 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S++ ++ IIFC K+ V L +++ +G++V +HG++ Q R+ L FK+ T+ + Sbjct: 241 DSEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ ++ HV N+D+P AE+Y+HRIGRTGRA + G A++LV ++ I Sbjct: 300 VATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQ 359 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384 IE++I+ K+ +L +L LEK Sbjct: 360 IERIIKSKI--TKKELPTLEDILEK 382 >gi|167035770|ref|YP_001671001.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida GB-1] gi|166862258|gb|ABZ00666.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1] Length = 443 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 222/370 (60%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA LGL ++ + Y PTP+Q K IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE + R L+L PTRELA QV +N +Y +N L+ + GG+ Q + Sbjct: 61 QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD F + + N ++ LV+DEADRMLD+GF +Q++ + +P R Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++ ++ L +P IEV+ ++TA +++ V +K L L Sbjct: 181 QTLLFSATFSDQIRVLAGLALNDPLSIEVSPRNATATSVKQWLVPV--DKKRKEDLFCHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q ++F + V L L +G + IHG+ Q +R + L +FK +Q+ Sbjct: 239 LRKQ-RWTQVLVFAKTRNGVDQLVQRLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357 Query: 359 AIEKLIEKKV 368 AIE L + + Sbjct: 358 AIEVLTRQTL 367 >gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] Length = 533 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 223/372 (59%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGL P ++ +VL AGY TP+Q + IP L D+ + TG+GKTA+F+LP + Sbjct: 1 MSFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 +L + + PR L+L PTRELA QV YGK A L+GG P+ Q K+ Sbjct: 61 QRLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L + DV++ TPGR++DH RGK+ + +E+LV+DEADRMLDMGF+ I+ I + P R Sbjct: 121 LSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTLLFSAT+ + ++ ++ +RIE+ P A+ + A + K LL Sbjct: 181 QTLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDH--KNRLLDA 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + M I+F + K++ + L + GF+ A+HG++ Q R + L +EG + Sbjct: 239 LLRDVE-MVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ + HV NFD+P +AE+Y+HRIGRTGRAGR G A + + + Sbjct: 298 VLVATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLV 357 Query: 358 DAIEKLIEKKVD 369 IE+ +++ Sbjct: 358 KNIERYTGNRIE 369 >gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene) [NC10 bacterium 'Dutch sediment'] Length = 479 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 158/393 (40%), Positives = 229/393 (58%), Gaps = 16/393 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L+ ++ AV + G+ PTPIQ +P +L+ DV A TG+GKTA+F+LP+L Sbjct: 1 MSFSSFKLNANLLKAVHNMGFKSPTPIQRVAVPPLLEGRDVMASAVTGSGKTAAFLLPIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++EK R R L+L PTRELAAQ++D+ + + L A + GG+ Q + Sbjct: 61 HCLMEKPRGTTR---ALVLAPTRELAAQISDHLRELAAHTPLKGAAVYGGVSMGPQEQAF 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DVLI TPGR+LDHF + IE LV+DEADRMLDMGF+P I+ I VP RQ Sbjct: 118 RRGVDVLIATPGRLLDHFQYPYARLAGIEHLVLDEADRMLDMGFLPDIRRILQHVPKKRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT+ + +++ + LQNP + + ++ A I H VA + K L +L+ Sbjct: 178 TLLFSATLPAPIMELARDMLQNPVSLNIERKAAPAAGITH--VAYPVPHELKSTLFLELV 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + K+ + F K L LEK G + IHGN Q R + L++FK G +++ Sbjct: 236 KNSAS-KHVLAFTRTKHRANRLADFLEKHGVTCERIHGNRSQAQRTEALASFKRGRCRVL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +G V NFDVP E+YIHR+GRTGR G A+TLV+ + + A Sbjct: 295 VATDIAARGIDVEALGLVVNFDVPQLPEDYIHRVGRTGRVDATGDAYTLVSPNEEGTLRA 354 Query: 360 IE-----KLIEKKVDWLNGDLSSLNPPLEKIDI 387 IE +L +KV N + P E+ ++ Sbjct: 355 IESNIGTRLPRQKVQGFNYATT----PTERFEV 383 >gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275] gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275] Length = 538 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 223/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL ++ + A+ + G+ +P+PIQ K+IP++L+ DV G AQTGTGKTA+F +P I Sbjct: 6 FEDLDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIP---I 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121 LEK R + ++L PTRELA QV+ K K L I GG P + Q K L+ Sbjct: 63 LEKIDPNDRSLQAIVLCPTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDRQIKALKG 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR +DH R + N++++V+DEAD MLDMGF I+ I VP RQT Sbjct: 123 GVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETILENVPEERQTT 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM + ++++ + P+ I+V T E I+ ++ T A S K +L +L+ Sbjct: 183 FFSATMPKAILELTKKYQNEPEHIKVVRKELTVENIKQYYIETRA--SNKIEVLSRLIDV 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K ++FCN KK L L+ +G+ A+HG++ Q R ++ F+ GTI ++VA Sbjct: 241 YNP-KLSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFRNGTIDILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFNFD+P E Y+HRIGRTGRAGR G +F+ V D++ + IE Sbjct: 300 TDVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTGRAGREGLSFSFVYGRDMRKMKDIE 359 Query: 362 KLIEKKVD 369 + + K++ Sbjct: 360 RYTKSKLE 367 >gi|114563961|ref|YP_751475.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335254|gb|ABI72636.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 423 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 146/375 (38%), Positives = 224/375 (59%), Gaps = 8/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL P ++ AV +GY TP+Q IPL L DV A+TGTGKTA+F LP+L Sbjct: 1 MSFTSLGLPPLLLDAVNQSGYQTATPVQQAVIPLALDGRDVLASAETGTGKTAAFALPLL 60 Query: 61 TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + L +P R LI+ PTRELA Q+ N KY + NLT + GG Q Sbjct: 61 SHLMNQDHSDLLPANRLRALIMTPTRELAIQIEQNLVKYSQFINLTSLAVYGGASINPQR 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K LE+G D+L+ TPGR+ D + +L ++ + LVIDEADRMLD+GF+ I+ + L+ Sbjct: 121 KALEQGIDILVATPGRLFDIIGQHELDLSFVTHLVIDEADRMLDLGFVKDIEKVKRLIAR 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 QT++FSAT +++++ ++ L NP+ + V T ++ A ++ + +K LL Sbjct: 181 QHQTMMFSATFSEDVKTLAAKMLNNPEYVHVETQTTAANVVQQVY---QVDTRRKAELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ + + ++F ++K+ +L L G HG+ Q +R + L FK G + Sbjct: 238 ELI-GKHNWQQVMVFTSRKETADHLYRELSLDGIKSSVFHGDKSQGARNRALEEFKTGQL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++++A+DLAARGLDI + V NF++P E+YIHRIGRTGRAG G+A +LV+ ++++ Sbjct: 297 RVLIATDLAARGLDIQALPRVINFELPEECEDYIHRIGRTGRAGLGGEAISLVSPQELEL 356 Query: 357 IDAIEKLIEKKVDWL 371 + AIE+LIE+ + L Sbjct: 357 LGAIEQLIEQSLPIL 371 >gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis 053442] gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis 053442] Length = 462 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQK 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans ATCC 17616] gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] Length = 505 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 233/409 (56%), Gaps = 36/409 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 32 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 91 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 +G R R P+ L+L PTRELA QV YGK+ Sbjct: 92 FAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 151 Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 152 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 271 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 272 QTVHYV-----DDRDHKDRLLDHLLRDA-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 325 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 326 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 385 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381 RTGRAGR G A +LV + + IE+ + V+ + G PP Sbjct: 386 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKTPP 434 >gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus suis GZ1] Length = 502 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 141/359 (39%), Positives = 223/359 (62%), Gaps = 6/359 (1%) Query: 13 VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM 72 + AV AG+ P+PIQ +TIPL L+ DV G AQTGTGKTA+F LP L ++ ++ Sbjct: 1 MLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTNNQAIQ- 59 Query: 73 PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132 +LI+ PTRELA Q + K+G+ + V + GG E Q K L GA +++ TPGR Sbjct: 60 --SLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGR 117 Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192 +LD R L ++ +E L++DEAD ML+MGF+ I+ I VP +RQTLLFSATM + ++ Sbjct: 118 LLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPIK 177 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 ++ F++ P+ +++ T ++ ++ + +K + +L+ D + I+F Sbjct: 178 RIGVKFMKEPEHVKIAAKELTNVNVDQYYL--RVKEHEKFDTMTRLMDV-DQPELSIVFG 234 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 K+ V L L+ +GF IHG++DQ R++++ +FK I ++VA+D+AARGLDI Sbjct: 235 RTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDIS 294 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371 V HV+N+D+P E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ IE L +K++ L Sbjct: 295 GVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKKRMKGL 353 >gi|145631096|ref|ZP_01786871.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021] gi|144983381|gb|EDJ90863.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021] Length = 614 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E++ K + T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A IE C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|83652036|gb|ABC36100.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264] Length = 562 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 107 FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 166 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 167 LDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 223 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + L P TRQTL Sbjct: 224 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 283 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T + LL + + Sbjct: 284 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRP 343 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 344 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 399 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 400 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 459 Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387 + + + V+W L D + L PP+E + I Sbjct: 460 QALGRDVEWHPLAELKADGNEPLLPPMETLQI 491 >gi|254230057|ref|ZP_04923456.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] gi|151937445|gb|EDN56304.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] Length = 471 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 225/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +GL+P ++ + Y TPIQ ++P +L+ DV G +TG+GKTA+F L +L+ Sbjct: 18 FDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSN 77 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA G+ +N+ V L GG+P Q LE Sbjct: 78 LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 134 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH +G++ ++ + LV+DEADRMLDMGF + I P RQTL Sbjct: 135 GAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTL 194 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++++++ +Q P+ I+V + T+ +H F ++ AL LL Sbjct: 195 LFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQH-FYKVEGSEARDEALANLLLTH 253 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V ++ L ++GFSV IHG+++QR R + L F ++ ++VA Sbjct: 254 QP--ESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVA 311 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++D + IE Sbjct: 312 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 371 Query: 362 KLIEKKV 368 + +E V Sbjct: 372 EYLEMDV 378 >gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 649 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 220/369 (59%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G +++ V AG+ P+PIQ ++ P+ L+ D+ +A+TG+GKT ++LP Sbjct: 161 MSFQSTGFPSEILREVQQAGFSAPSPIQAQSWPIALKGSDIVAVAKTGSGKTLGYLLPGF 220 Query: 61 TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R P L+L PTRELA Q+ D K+G++ ++ L GG P Q + L Sbjct: 221 ILVKNLRHNSRDGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRDL 280 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD+++ TPGR+ D GK+ + + LV+DEADRMLDMGF P I+ I V RQ Sbjct: 281 ERGADIVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQ 340 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS---KKCALLQ 236 TL+F+AT E++K++ + L NP ++ + +T E + + + Y + + +K L Sbjct: 341 TLMFTATWPREVRKIASDLLTNPVQVNIG---NTDELVANKSITQYVEVTTSMEKGRRLD 397 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L+ Q+ IIFC+ K+ L +L +Q + AIHG+ Q R +LS F+ G Sbjct: 398 QILRQQEPGSKVIIFCSTKRMCDQLSRNLSRQ-YGASAIHGDKSQAERDSVLSEFRTGRC 456 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLD+ D+ V N+D P E+Y+HRIGRTGRAG G A+T +D K+ Sbjct: 457 PILVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGASGIAYTFFCDQDSKY 516 Query: 357 IDAIEKLIE 365 + K++E Sbjct: 517 ASDLVKILE 525 >gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC 43768] gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC 43768] Length = 457 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|325521922|gb|EGD00628.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. TJI49] Length = 464 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 152/392 (38%), Positives = 225/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GYV TPIQ ++P+ L HD+ A+TG+GKTA+F L +L+ Sbjct: 9 FSALPLTPAALANLAQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LDARRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + L P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T + +L + Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLNHYRP 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 246 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361 Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387 + ++ V+W +L PP+E + I Sbjct: 362 QAQKRDVEWHPLAELKPASDQTLLPPMETLQI 393 >gi|167576699|ref|ZP_02369573.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis TXDOH] Length = 465 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + L P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T + LL + + Sbjct: 187 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362 Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387 + + + V+W L D + L PP+E + I Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQI 394 >gi|126439983|ref|YP_001059500.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668] gi|126219476|gb|ABN82982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668] Length = 514 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 44 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 103 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 104 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 163 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 164 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 223 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 224 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 283 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 284 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 337 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 338 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 397 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 398 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 427 >gi|167739208|ref|ZP_02411982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 14] Length = 460 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 42 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 102 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 161 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 162 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 282 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 335 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 336 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 395 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 396 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 425 >gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1] gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1] Length = 506 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 233/409 (56%), Gaps = 36/409 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 32 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 91 Query: 63 LE-----------------KGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 +G R R P+ L+L PTRELA QV YGK+ Sbjct: 92 FAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 151 Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 152 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 271 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 272 QTVHYV-----DDRDHKDRLLDHLLRDA-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 325 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 326 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 385 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381 RTGRAGR G A +LV + + IE+ + V+ + G PP Sbjct: 386 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKTPP 434 >gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus Ellin428] gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus Ellin428] Length = 591 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 222/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLSP+++ AV G+ + +PIQ +TIP +L DV G++QTG+GKTA+F +P + Sbjct: 6 FTELGLSPELLKAVAKMGFEEASPIQSETIPQLLTGADVVGLSQTGSGKTAAFAIPAI-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121 E+ +R P+ LIL PTRELA QVA+ K L I GG ++ Q + L Sbjct: 64 -ERVDGNLRAPQVLILCPTRELAMQVAEEVAKLAFFKRGVRELPIYGGQSYDRQLRGLRD 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA ++I TPGR++DH R L ++ + ++++DEADRMLDMGF I+ I P RQT+ Sbjct: 123 GAQIIIGTPGRVMDHLERKTLRLDQVGMIILDEADRMLDMGFRDDIETILGQAPAERQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM + ++ + + + P + + T I+ + K +L +L+ Sbjct: 183 FFSATMPPAINQLVKKYTKEPVNVRIQAQEMTVPAIDQSYYEV--DRRSKLEVLCRLIDL 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 QD +K GIIFC K V L L+ +G+S +HG+I Q R ++++ F++ + +VA Sbjct: 241 QD-IKYGIIFCATKMMVDELSDHLKARGYSSDKLHGDISQSMRERVVAKFRKRGFEFLVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ D+ VFN+D+P AE+Y+HRIGRTGRAGR G+A T VA +I + I Sbjct: 300 TDVAARGLDVDDIEVVFNYDLPQDAEDYVHRIGRTGRAGRSGRAVTFVAGREIWKMQQII 359 Query: 362 KLIEKKV 368 + + KV Sbjct: 360 RFTKGKV 366 >gi|83719456|ref|YP_442523.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] gi|83653281|gb|ABC37344.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] Length = 482 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 14 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 73 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 74 FAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 133 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 134 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 193 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 194 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 253 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 254 QTVHYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 307 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 308 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 367 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 368 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 397 >gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Crocosphaera watsonii WH 8501] gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Crocosphaera watsonii WH 8501] Length = 480 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 224/369 (60%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS V + G+ PT IQ K IPL+L+ +D+ G +QTGTGKTA++ LP+L Sbjct: 3 ISFENLGLSDARVNKLQRLGFESPTEIQEKAIPLILESNDILGQSQTGTGKTAAYSLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ TLIL PTRELA QVA+ + + L + + GG E Q + LE Sbjct: 63 EQIDTKNPNVQ---TLILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLE 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D R KL+++ + V+DEAD ML MGFI ++ I P TR T Sbjct: 120 RGVQIVVGTPGRVIDLLERKKLVLDCLRWAVLDEADEMLSMGFIDDVKTILRKTPETRNT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM E++ + FL++P + V + I+ +SK+ AL Q +L+ Sbjct: 180 ACFSATMPREIRDLVNQFLKSPVTVSVERKQAAPTHIDQHLYYVPRGWSKRKAL-QPILE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D ++ IIF K+ L L++ G SV HGN+ Q R +++ F++G I+L+V Sbjct: 239 MEDP-ESAIIFVRTKQTASELTTRLQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIKLVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ ++ HV N+D+P+ +E YIHRIGRTGRAG+ G A +L+ D + + I Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPVDRRMVRQI 357 Query: 361 EKLIEKKVD 369 E+ + +K++ Sbjct: 358 ERKLRQKLE 366 >gi|221198351|ref|ZP_03571397.1| dead/deah box helicase [Burkholderia multivorans CGD2M] gi|221208290|ref|ZP_03581294.1| dead/deah box helicase [Burkholderia multivorans CGD2] gi|221171938|gb|EEE04381.1| dead/deah box helicase [Burkholderia multivorans CGD2] gi|221182283|gb|EEE14684.1| dead/deah box helicase [Burkholderia multivorans CGD2M] Length = 506 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 233/409 (56%), Gaps = 36/409 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 32 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 91 Query: 63 LE-----------------KGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 +G R R P+ L+L PTRELA QV YGK+ Sbjct: 92 FAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 151 Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 152 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 271 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 272 QTVHYV-----DDRDHKDRLLDHLLRDA-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 325 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 326 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 385 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVDWLNGDLSSLNPP 381 RTGRAGR G A +LV + + IE+ + V+ + G PP Sbjct: 386 RTGRAGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEPRKTPP 434 >gi|315123425|ref|YP_004065431.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] gi|315017185|gb|ADT70522.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] Length = 433 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 160/420 (38%), Positives = 244/420 (58%), Gaps = 11/420 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +P+++ A+ + Y TPIQ IP V + DV AQTGTGKTA+F LP++ Sbjct: 1 MNFKSFSFAPELIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + E + P L+L PTRELA Q+A+NF+ + K +L V L GG+ Q L Sbjct: 61 QKLFESDSSTTNAPSALVLAPTRELAEQIANNFKDFAKYTSLKVVSLFGGVNTAGQEIAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D+++ TPGR+LDH G L + ++ LV+DEADRMLDMGFI +Q++ RQ Sbjct: 121 KEGVDIVVATPGRLLDHIRLGNLSLAQVKHLVLDEADRMLDMGFINDMQSVIKSCADERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +++ + L+ P+ + V+ +STA T++H V + +K LL +L+ Sbjct: 181 ILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQH--VVYPVEERRKQELLSELI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F N K+ L L G HG+ Q +R + L FKEG ++++ Sbjct: 239 GKKN-WQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+++AARG+DI + V N D+P AE+Y+HRIGRTGRAG G+A + V++E+ + Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENMLFE 357 Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKIDI--AQHNHARKNNPIPQKSTGFDRRKKNYS 414 IE LI +K+ +L G ++S+ ++KI A R N P Q +TG + R KN S Sbjct: 358 IETLIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRANKPSGQ-ATG-EARAKNRS 415 >gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4] gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4] Length = 619 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL L+ ++ A+ G+V PTPIQ IP +L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFRDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ + R P+ ++L PTRELA QVA + GKN L V + GG Q + L Sbjct: 66 NKLDLDQ---RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA V++ TPGR+ D NR +L ++ ++ V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KNGAHVIVGTPGRVQDLINRERLHLDEVKTFVLDEADEMLNMGFVDDVTAIMEHSPDSAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+ + E FL++P ++V + T + ++ F +K + +LL Sbjct: 183 RVLFSATMPPMLKSICERFLRSPVTVDVAGKNHTVDKVQQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKKGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|256422981|ref|YP_003123634.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] gi|256037889|gb|ACU61433.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] Length = 444 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 151/373 (40%), Positives = 228/373 (61%), Gaps = 11/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + L +V+ + GY TP+Q K IP ++ D+ AQTGTGKTA+F+LP+L Sbjct: 1 MYFDEFDLDDRVLDGIDAMGYTTATPVQEKVIPPIIAGKDILACAQTGTGKTAAFLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-----GGIPFEAQ 115 L R +LI+ PTRELA Q+A E G +Y +V+ + G F A+ Sbjct: 61 HRLITEPHDARKINSLIIVPTRELAVQIAQTLE--GMSYFTSVSSIAVYGGSNGALFAAE 118 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L G D++ICTPGR++ H N G + ++ ++ LV+DEADRMLDMGF I ITS +P Sbjct: 119 KKALTSGVDIVICTPGRMIAHLNMGYVKLDAVKYLVLDEADRMLDMGFSDDIIRITSTLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSATM D+++K++ L P+ I + + ++ FV Q K L+ Sbjct: 179 KERQNLLFSATMPDKIRKLALKILHQPEEINIAISKPPEKIVQEAFVVFEEQ---KTGLI 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +QLL ++ IIFC++K+NV L + L+K FSV IH +++Q R ++L +FK Sbjct: 236 KQLLARKE-FGCIIIFCSRKQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKK 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+ +RG+DI D+ V N+DVPN AE+YIHRIGRT RA G A+T++++++ + Sbjct: 295 LKMLVATDILSRGIDIEDIDLVINYDVPNDAEDYIHRIGRTARAATDGTAYTIISEKEQR 354 Query: 356 HIDAIEKLIEKKV 368 IE+++ K V Sbjct: 355 KFARIEEVLGKPV 367 >gi|119468751|ref|ZP_01611803.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein family [Alteromonadales bacterium TW-7] gi|119447807|gb|EAW29073.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein family [Alteromonadales bacterium TW-7] Length = 433 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 155/413 (37%), Positives = 242/413 (58%), Gaps = 8/413 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +P+++ A+ + Y TPIQ IP V + DV AQTGTGKTA+F LP++ Sbjct: 1 MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVI 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++E + P L+L PTRELA Q+A+N ++Y K+ +L V L GG+ Q L Sbjct: 61 QKLIESDLSTTNAPTALVLAPTRELAEQIANNCKEYAKHTSLKVVSLFGGVNTAGQENAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D+++ TPGR+LDH G L + N++ LV+DEADRMLDMGFI +Q + RQ Sbjct: 121 KAGVDIVVATPGRLLDHIRLGNLSLANVKHLVLDEADRMLDMGFITDMQTVIKSCADDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +++ + L+ P+ + V+ +STA T++H V + +K LL +L+ Sbjct: 181 ILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQH--VVYPVEERRKQELLSELI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F N K L L G HG+ Q +R + L FKEG ++++ Sbjct: 239 GKKN-WQQVLVFVNMKDTADELVKELNLDGIPATVCHGDKSQGNRRRALREFKEGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+++AARG+DI + V N D+P AE+Y+HRIGRTGRAG G+A + V++E+ + Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENTLFE 357 Query: 360 IEKLIEKKVD--WLNG-DLSSLNPPLEKIDIA-QHNHARKNNPIPQKSTGFDR 408 IE LI +K+ +L G ++S+ ++KI H ++N + ++TG R Sbjct: 358 IEALIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRSNKLSGQATGEAR 410 >gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC 14685] gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC 14685] Length = 473 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFTRLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYIGRKL 369 >gi|167894911|ref|ZP_02482313.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 7894] Length = 483 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 45 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 104 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 105 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 164 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 165 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 224 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 225 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 284 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 285 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 338 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 339 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 398 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 399 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 428 >gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158] gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158] Length = 523 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 149/390 (38%), Positives = 228/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 48 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 107 Query: 63 LEK-----------------GRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 108 FAQLQKAHAQQPRAPREAGQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 167 Query: 100 -NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 168 KRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 227 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 228 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 287 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 288 QTVHYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFESAA 341 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 342 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 401 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 402 RTGRAGRSGIAVSLVHHAEQGALKRIERFV 431 >gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus AHT 1] gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus AHT 1] Length = 424 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 158/430 (36%), Positives = 241/430 (56%), Gaps = 27/430 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DFA LG+ ++ + + G PTP+Q + IP +L D+ AQTGTGKT +F+LP Sbjct: 4 DFASLGIRGELHKTLAELGISVPTPVQTQAIPALLSGKDIVAQAQTGTGKTLAFLLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ILEK + + LI+ PTRELA Q+ K + GG E Q KKL+ Sbjct: 61 ILEKVKVDKPFIQALIITPTRELALQITAELNKLASTVGANSLAVYGGQDVERQIKKLKG 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGRILDH RG + + +++LV+DEAD+ML MGF+P + I RQT+ Sbjct: 121 AIHIVVGTPGRILDHMRRGTISFSGVQMLVLDEADQMLHMGFLPEVDQIIGQTSPKRQTM 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++ +++ +++ P I++ + T + I V+T +K+ L + + Q Sbjct: 181 LFSATMPGSIRNLAKRYMKTPVDIKIESKKVTLDEISQLVVST-TDRAKQDTLFKLIDQY 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + +IFC K+ L +L + G+S +HG++ Q R +++ F++ IQL+VA Sbjct: 240 RPFL--ALIFCRTKRRAAKLNQALLEHGYSADELHGDLSQAKREQVMKRFRQAHIQLLVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HVFN+D+P E+YIHRIGRTGRAG G A TLVA +D + AIE Sbjct: 298 TDVAARGLDVEGITHVFNYDIPQDLESYIHRIGRTGRAGEKGLALTLVAPKDSPMLQAIE 357 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ-KSHI 420 K + +D LN A N ++ P++ + KK+ SSQ + H Sbjct: 358 KGLGYSIDNLN---------------APKNSEKQRRIQPER-----QDKKSVSSQNRQHQ 397 Query: 421 PLKESEKISK 430 P K S++ K Sbjct: 398 PSKFSKRTGK 407 >gi|15677233|ref|NP_274386.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58] gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58] gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha710] gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis H44/76] gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis OX99.30304] gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M0579] gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis CU385] gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis H44/76] gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240149] gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis NZ-05/33] Length = 462 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQK 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013] gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240355] Length = 462 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha14] gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha14] Length = 462 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] Length = 564 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 236/382 (61%), Gaps = 14/382 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL LS +V A+ D G+ + TPIQ ++IP +L+ +D+ G AQTGTGKT +F +P + Sbjct: 4 LSFKDLTLSDEVQHAIADMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAV 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 EK + + + L+L PTRELA Q + K + + + + GG P + Q L Sbjct: 64 ---EKIDSHIDSIQVLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++ ++I TPGR++DH R L + +++++V+DEAD ML+MGF I I VP RQ Sbjct: 121 KKRPQIIIGTPGRVMDHMRRKTLKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM E+ ++++ + ++P I++ T +IE ++ + S K +L +L+ Sbjct: 181 TILFSATMPKEILELTKKYQKDPVHIKIAHKELTVPSIEQYYLE--VKESAKLEVLSRLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D +K ++FCN KK V L SL+ +GFS A+HG++ Q R K++S F++G ++ Sbjct: 239 DTND-IKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ DV VFN+D+PN E Y+HRIGRTGRAGR GKAFT ++ ++ + Sbjct: 298 IATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAFTFISGREMYKLRD 357 Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381 I++ + + ++ PP Sbjct: 358 IQR-------YTKSTIVAMKPP 372 >gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix] gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix] Length = 627 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 217/367 (59%), Gaps = 6/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS + A+L G+ PTP+Q IP +L DV G AQTGTGKT +F LP++ Sbjct: 7 FAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLIDS 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ + RV+ LIL PTRELA QVA E + + + L + + GG P Q + L Sbjct: 67 IDPAQRRVQ---ALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRD 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L ++ + ++V+DEAD ML MGF+ I+ I P RQT Sbjct: 124 GAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQTT 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++ ++ P+ I + + I+ + ++ K L ++++ Sbjct: 184 LFSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRH--KTEALGRMIEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F K + +L QG ++G+++Q R +++++ ++G + ++VA Sbjct: 242 EAGLDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+P + HVFN+D P AE Y+HRIGRTGRAGR G+A + + + IE Sbjct: 302 TDVAARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDIE 361 Query: 362 KLIEKKV 368 +L K V Sbjct: 362 RLTGKPV 368 >gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha275] Length = 462 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001] gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001] Length = 610 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 141/361 (39%), Positives = 217/361 (60%), Gaps = 7/361 (1%) Query: 10 PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69 P+++ A+ GY +P+PIQ IP ++ D+ G AQTGTGKTA+F LP+L L+ A Sbjct: 58 PEILEALAAIGYSEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAGLD---AE 114 Query: 70 VRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLIC 128 R P+ L+L PTRELA QVA++F Y + + GG F Q L RGA V++ Sbjct: 115 QRKPQVLVLAPTRELALQVAESFNSYAAQLPQVRTVAVYGGADFRDQIHHLRRGAQVVVG 174 Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188 TPGR++DH +G L ++ + LV+DEAD ML MGFI ++ + +P RQ +LFSATM Sbjct: 175 TPGRVMDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVLGQLPEQRQVVLFSATMP 234 Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248 E++++S+ +L P I + T ++ A I F+ A K A L+++L+S+ T + Sbjct: 235 AEIRRISQQYLNGPAEITIRTKAADASRIRQRFLTVPAPL--KLAALERVLESE-TSEGV 291 Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308 IIF K + + SLE G+ V ++G++ Q R + + K G + ++VA+D+AARG Sbjct: 292 IIFARTKAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKNGQVDVLVATDVAARG 351 Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 LD+ +G V N+D+P E Y+HRIGRTGRAGR G+A + + + + +E+ K + Sbjct: 352 LDVERIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFLTPRERRFLGGLERAAGKPI 411 Query: 369 D 369 + Sbjct: 412 E 412 >gi|167581446|ref|ZP_02374320.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH] Length = 517 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 49 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 108 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 109 FAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 168 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 169 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 228 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 229 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 288 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 289 QTVHYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 342 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 343 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 402 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 403 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 432 >gi|15678231|ref|NP_275346.1| EIF-4a family ATP-dependent RNA helicase [Methanothermobacter thermautotrophicus str. Delta H] gi|2621248|gb|AAB84709.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter thermautotrophicus str. Delta H] Length = 425 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 148/372 (39%), Positives = 225/372 (60%), Gaps = 9/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F++ +S + A+ D G+ TPIQ T+P+ L DV G AQTGTGKTA+F +P+L Sbjct: 4 LEFSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE R +P+ LI+ PTREL QV++ ++ GK + V + GG Q +L Sbjct: 64 ENLEAER----VPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLR 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++DH RG + + I +V+DEAD ML+MGFI I+ I S VP RQT Sbjct: 120 RGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT++ + +++ +++NP+ + V S I+ + T + K LL +L Sbjct: 180 MLFSATVSKPILRIARKYMRNPQVMRVEKKHSPK--IDEFYFKTREE--DKVELLDWILS 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + ++ G+IFCN K+ V L L + G+S IHG++ Q R +++ F+ G L+V Sbjct: 236 SNN-IRMGLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+ +PDV V N+D+P E Y+HRIGRTGRAG GK+FTLV ++ + I Sbjct: 295 ATDVAARGIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRI 354 Query: 361 EKLIEKKVDWLN 372 + K++ N Sbjct: 355 QSFTGKRIKQSN 366 >gi|53719796|ref|YP_108782.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei K96243] gi|53724110|ref|YP_103224.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344] gi|67639288|ref|ZP_00438162.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4] gi|121599488|ref|YP_993402.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1] gi|124385746|ref|YP_001029162.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] gi|126448376|ref|YP_001080910.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247] gi|166999673|ref|ZP_02265508.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20] gi|167903298|ref|ZP_02490503.1| ATP-dependent RNA helicase [Burkholderia pseudomallei NCTC 13177] gi|217421948|ref|ZP_03453452.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576] gi|254177947|ref|ZP_04884602.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399] gi|254200174|ref|ZP_04906540.1| DEAD/DEAH box helicase [Burkholderia mallei FMH] gi|254206512|ref|ZP_04912864.1| DEAD/DEAH box helicase [Burkholderia mallei JHU] gi|254257950|ref|ZP_04949004.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a] gi|254297179|ref|ZP_04964632.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e] gi|254358076|ref|ZP_04974349.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280] gi|52210210|emb|CAH36189.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei K96243] gi|52427533|gb|AAU48126.1| ATP-dependent RNA helicase RhlE, putative [Burkholderia mallei ATCC 23344] gi|121228298|gb|ABM50816.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1] gi|124293766|gb|ABN03035.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] gi|126241246|gb|ABO04339.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247] gi|147749770|gb|EDK56844.1| DEAD/DEAH box helicase [Burkholderia mallei FMH] gi|147753955|gb|EDK61020.1| DEAD/DEAH box helicase [Burkholderia mallei JHU] gi|148027203|gb|EDK85224.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280] gi|157807478|gb|EDO84648.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e] gi|160698986|gb|EDP88956.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399] gi|217395690|gb|EEC35708.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576] gi|238519823|gb|EEP83289.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4] gi|243064323|gb|EES46509.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20] gi|254216639|gb|EET06023.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a] Length = 516 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 45 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 104 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 105 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 164 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 165 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 224 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 225 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 284 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 285 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 338 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 339 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 398 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 399 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 428 >gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 712 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 149/402 (37%), Positives = 224/402 (55%), Gaps = 12/402 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL + AV D G+ P+ IQ + IP +L D+ G+AQTGTGKTA+F LP+L Sbjct: 51 FDTLGLPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLPLLAS 110 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 +E R + L+L PTRELA QVA+ E + + ++ V + GG P+ Q + L Sbjct: 111 VEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALRD 170 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L++++ LV+DEAD ML MGF ++ I S P RQ Sbjct: 171 GVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQVA 230 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++ +++ L +P I V SST ++ + + K L ++L + Sbjct: 231 LFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYA--IVPFRHKVGALTRILAT 288 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + I+F + + +L ++G S I G++ Q+ R KI+ + G + ++VA Sbjct: 289 SDADAS-IVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVA 347 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V NFD+P AE Y+HRIGRTGRAGR G+A + V + + IE Sbjct: 348 TDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFIE 407 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403 I KV D+ S D++ H AR + P ++ Sbjct: 408 NTI--KVSLEEIDIPSPR------DVSAHRAARLLDSAPART 441 >gi|257138731|ref|ZP_05586993.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] Length = 515 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 47 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 106 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 107 FAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 166 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 167 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 226 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 227 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 286 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 287 QTVHYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 340 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 341 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 400 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 401 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 430 >gi|167619557|ref|ZP_02388188.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4] Length = 454 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 47 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 106 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 107 FAQLQKAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 166 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 167 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 226 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 227 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 286 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 287 QTVHYV-----DDRDHKDRLLDHLLRDT-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 340 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 341 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 400 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 401 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 430 >gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z] gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum Z] Length = 656 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 145/366 (39%), Positives = 227/366 (62%), Gaps = 17/366 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ +S +++ A+ D G+ +PTPIQ IP +L DV G AQTGTGKTA+F +P++ Sbjct: 7 FAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIER 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFE---KYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ V+ L+L PTRELA Q A+ F KY K N V + GG P E Q + L Sbjct: 67 LDPDNKNVQ---ALVLSPTRELAIQTAEEFSRLMKYKKGLN--VVPIYGGQPIERQLRAL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + V+I TPGR++DH RG L ++++ + ++DEAD+MLDMGF I++I P RQ Sbjct: 122 KGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQ 181 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++ F ++P+ +++ T IE ++ ++ L+ L Sbjct: 182 TILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEV-----RERDKLEALC 236 Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ D M N ++FCN K+ V +L ++ +G+ V A+HG++ Q+ R ++++ F+ G+I Sbjct: 237 RTLD-MNNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSI 295 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++A+D+AARG+D+ DV VFN+DVP E Y+HRIGRT RAGR GK+ T VA +I Sbjct: 296 DVLIATDVAARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYK 355 Query: 357 IDAIEK 362 + I++ Sbjct: 356 LRDIQR 361 >gi|289677204|ref|ZP_06498094.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 379 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 136/340 (40%), Positives = 217/340 (63%), Gaps = 7/340 (2%) Query: 30 KTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVA 89 ++IP+++ HD+ G AQTGTGKTA+F LP+L ++ + R P+ LIL PTRELA QVA Sbjct: 2 QSIPIIMAGHDMIGQAQTGTGKTAAFALPILHRIDPSK---REPQALILAPTRELALQVA 58 Query: 90 DNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIE 148 FE Y K +TV + GG P Q K + GA +++ TPGR+ DH R + ++ + Sbjct: 59 TAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVN 118 Query: 149 ILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN 208 LV+DEAD ML +GF+ ++ I +P T+QT+LFSAT+ ++ ++E L++PK +++ Sbjct: 119 HLVLDEADEMLKLGFMDDLEVIFKAMPETKQTVLFSATLPQSIRAIAERHLRDPKHVKIQ 178 Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 T + T IE + +A +K + + LL+ +D I+F K+ ++L +LE + Sbjct: 179 TKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEVED-FDALIMFVRTKQATLDLASALEAK 235 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G+ A++G+I Q R +++ + K+G + ++VA+D+AARGLD+P + HVFN D+P E+ Sbjct: 236 GYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPES 295 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 Y+HRIGRTGRAGR G+A LV + + + IE++ +KV Sbjct: 296 YVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKV 335 >gi|259418826|ref|ZP_05742743.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B] gi|259345048|gb|EEW56902.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B] Length = 442 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 150/368 (40%), Positives = 224/368 (60%), Gaps = 11/368 (2%) Query: 2 DFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 +F+ + L PK + ++A G+ PTPIQ + IP L DV G+AQTGTGKTA+F +P++ Sbjct: 3 EFSTMDL-PKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLV 61 Query: 61 T-ILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LE G + R LIL PTRELA Q+A+ + L L++GG+ Q + Sbjct: 62 AQMLEYGQKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQINR 121 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG D+L+ TPGR+LD +R L + + + LV+DEAD+MLD+GFI ++ I +L+P R Sbjct: 122 LSRGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEKR 181 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYSKKCALLQ 236 QT+LFSATM ++ +++ +L++P RIEV P A + F+A + S Sbjct: 182 QTMLFSATMPKQMNEIANAYLKSPVRIEVTPPGKPATKVTQSVHFIAKAEKLSLLKE--- 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L ++ + ++F K + L L+K GF AIHGN Q R + L FK G I Sbjct: 239 --LLAKHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDIPDV +V+N+++PN + Y+HRIGRT RAG+ G+A A ++I Sbjct: 297 TVLVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGD 356 Query: 357 IDAIEKLI 364 + AI+K + Sbjct: 357 LKAIQKTM 364 >gi|145640153|ref|ZP_01795737.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021] gi|145274739|gb|EDK14601.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21] Length = 613 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E++ K + T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +PK +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|145637208|ref|ZP_01792870.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH] gi|145269653|gb|EDK09594.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH] Length = 613 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E++ K + T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +PK +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|282880318|ref|ZP_06289032.1| ATP-dependent RNA helicase DeaD family protein [Prevotella timonensis CRIS 5C-B1] gi|281305820|gb|EFA97866.1| ATP-dependent RNA helicase DeaD family protein [Prevotella timonensis CRIS 5C-B1] Length = 583 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 159/441 (36%), Positives = 257/441 (58%), Gaps = 20/441 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + TP+Q K IP +L+ DV G+AQTGTGKTA+++LP+L Sbjct: 1 MKFEELPLNNNVLDALYDMHFDTCTPVQEKCIPGILKGRDVLGVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 + ++ LI+ PTRELA Q+ + +G Y L +VA+ G G ++ Sbjct: 61 SKIDSNNYPDNAINCLIMSPTRELAQQIDQAMQGFG--YYLQGVSSVAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + K L GADV+I TPGR++ H N G + M+ I V+DEADRMLDMGF I +I + Sbjct: 119 EVKSLRLGADVVIATPGRLISHINMGNIDMSKISFFVLDEADRMLDMGFADDIMSIAKGL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P T QT++FSATM D++ ++ L+NP I++ S AE I+ C Y ++K + Sbjct: 179 PKTCQTIMFSATMPDKINDLARTLLKNPVEIKLAV-SKPAEKIKQCAYICYE--AQKLKI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ + + D +K I+FC K V + +L + + +H +++Q R +++ NFK G Sbjct: 236 IEDIFKKGD-LKRVIVFCGSKLKVKQVAAALHRMNVNCSEMHSDLEQAQRDEVMLNFKSG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+ ARG+DI D+ V N+DVPN AE+Y+HRIGRT RA R G+A TLVA++D Sbjct: 295 QLDVLVATDIVARGIDIDDISMVINYDVPNDAEDYVHRIGRTARADRDGQAITLVAQDDT 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 + IEK + K+V+ + P + ++ R+ K+ R+ +N + Sbjct: 355 YLFEQIEKFLGKEVE-------KIQLPEGIGEAPEYTSGRRPQRRGTKAKSIRRKDRNQT 407 Query: 415 SQKSHIPLKESEKISKLQQDI 435 + K H P +++++ ++ Q + Sbjct: 408 AHK-HKPRRQNDQQNETSQTV 427 >gi|224112054|ref|XP_002316069.1| predicted protein [Populus trichocarpa] gi|222865109|gb|EEF02240.1| predicted protein [Populus trichocarpa] Length = 569 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 225/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G +++ + AG+V PTPIQ +T P+ LQ D+ IA+TG+GKT +++P Sbjct: 148 MTFEATGFPSEILRDIHSAGFVSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF 207 Query: 61 TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ R + P L+L PTRELA Q+ D K+G++ ++ L GG P Q K+L Sbjct: 208 ILLQQRRNNAQNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKIPQLKEL 267 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD+++ TPGR+ D ++ + +LV+DEADRMLDMGF P I+ I + +P RQ Sbjct: 268 ERGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQRQ 327 Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 TL+F+AT E++K++ + L +P ++ V+ S+ ++ V + ++ L+ Sbjct: 328 TLMFTATWPKEVRKIASDLLVHPVQVNIGSVDVLSANKSITQYVEVVPQMEKDRR---LE 384 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L++Q+ IIFC+ K+ L S+ + F AIHG+ Q R L+ F+ G Sbjct: 385 QILRTQERGSKAIIFCSTKRLCDQLARSIGRN-FGAAAIHGDKSQGERDWALNQFRSGKS 443 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDI D+ V N+D P+ E+Y+HRIGRTGRAG G ++T +++D K+ Sbjct: 444 PILVATDVAARGLDIKDIRIVINYDFPSGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKY 503 Query: 357 IDAIEKLIE 365 + KL+E Sbjct: 504 AADLVKLLE 512 >gi|121635074|ref|YP_975319.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18] gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18] gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M6190] gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M13399] gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis ES14902] gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240013] gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M04-240196] Length = 462 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|331005516|ref|ZP_08328893.1| ATP-dependent RNA helicase [gamma proteobacterium IMCC1989] gi|330420663|gb|EGG94952.1| ATP-dependent RNA helicase [gamma proteobacterium IMCC1989] Length = 410 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 228/375 (60%), Gaps = 6/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+ L SP++ A+ GY K TPIQ + I + DV AQTGTGKTA+F LP+L Sbjct: 1 MNFSSLDFSPEIQKAITGCGYEKMTPIQEQAIVPARRGRDVLACAQTGTGKTAAFALPIL 60 Query: 61 T-ILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +++K R V PR LIL PTRELA Q+A+ Y K+ T+ GG+ Q Sbjct: 61 QQMIDKSRKSEEVNTPRALILTPTRELAEQLANTIGAYAKHLPFTIVAAYGGVKISKQAA 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K D+LI TPGR+L+ + + N+E +V+DEADRMLDMGF+ +Q + Sbjct: 121 KFSSDVDILIATPGRLLELVTQCHTHLANVEFVVLDEADRMLDMGFVNDVQTLLKGTAKN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT++ + ++S L+N I V +STA+TIEH + + +K AL + Sbjct: 181 RQCLLFSATLSAGVNELSHKLLKNHLEIRVTKANSTADTIEH--IVYPIEEKRKIALFNE 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + + ++F + K +L SL++ HG+ Q +R + L++FK IQ Sbjct: 239 LLEEYNWYQV-LVFTSTKGQADSLLASLKENKIPAAICHGDKTQGARRRALADFKSAKIQ 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+++AARGLDI + +V N+++P AE+Y+HRIGR GRAG G A +LV++E+ +++ Sbjct: 298 VLIATEVAARGLDIQGLEYVVNYNLPFLAEDYVHRIGRAGRAGNKGYAISLVSREEERNL 357 Query: 358 DAIEKLIEKKVDWLN 372 DAI++LI +KV +N Sbjct: 358 DAIQRLIGQKVKRIN 372 >gi|304414099|ref|ZP_07395467.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1] gi|304283313|gb|EFL91709.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1] Length = 635 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 150/381 (39%), Positives = 231/381 (60%), Gaps = 14/381 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY KP+PIQ++ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 16 FTNLGLSDPILSALTNLGYKKPSPIQLECIPHLLNGCDVLGMAQTGSGKTAAFGLPLLHN 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + +A ++ P+ L+L PTRELA QVA+ F KY K N V L GG ++ Q + L Sbjct: 76 I---KAEIKSPQILVLAPTRELAVQVAEALTEFSKYIKGVN--VVALYGGQRYDLQLRAL 130 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G V++ TPGR+LDH RG L + + LV+DEAD ML MGFI ++NI +P Q Sbjct: 131 RQGPQVVVGTPGRLLDHLKRGTLNPSKLSGLVLDEADEMLRMGFIEDVENIMKQIPAVHQ 190 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++++ F++ P+ I + + +T I + +K L + L Sbjct: 191 TALFSATMPEAIRRITRRFMKEPQEIRIQSSVTTRPDISQSYWMVDGM--RKNEALVRFL 248 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +S+D IIF K + + +LE G++ A++G+++Q R L K+G + ++ Sbjct: 249 ESED-FDAAIIFVRTKNATLEVAEALELNGYNSAALNGDMNQALRESTLERLKDGRLNIL 307 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKH 356 +A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR G+A V + +K+ Sbjct: 308 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEHRERRLLKN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSS 377 I+ KL +V N +L S Sbjct: 368 IERTMKLTIPEVKLPNSELLS 388 >gi|53716164|ref|YP_106468.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344] gi|67639524|ref|ZP_00438373.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei GB8 horse 4] gi|254203477|ref|ZP_04909838.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei FMH] gi|254205355|ref|ZP_04911708.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei JHU] gi|52422134|gb|AAU45704.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344] gi|147745716|gb|EDK52795.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei FMH] gi|147754941|gb|EDK62005.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei JHU] gi|238520075|gb|EEP83538.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei GB8 horse 4] Length = 465 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 223/393 (56%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PKR+++ ++ + + T + LL + Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E Y+HRIGRTGRA + G A +L + ++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362 Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387 + + ++V W GD + L PP+E + I Sbjct: 363 QALAREVKWHPLAELKAGGD-APLLPPMETLQI 394 >gi|172062287|ref|YP_001809938.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria MC40-6] gi|171994804|gb|ACB65722.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MC40-6] Length = 465 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 152/393 (38%), Positives = 230/393 (58%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GYV TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 9 FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LDTRRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + +++ + QLL Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDNSKIRQRFY---EVAETERLHAVGQLLNH 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361 Query: 362 KLIEKKVDWL-------NGDLSSLNPPLEKIDI 387 + ++++V+W G+ +L PP+E + I Sbjct: 362 QALKREVEWHPLAELKPAGN-DTLLPPMETLQI 393 >gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis N1568] Length = 462 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|76809038|ref|YP_334004.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b] gi|76578491|gb|ABA47966.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b] Length = 529 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 58 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 117 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 118 FAQLQKAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 177 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 178 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 237 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 238 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 297 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 298 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 351 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 352 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 411 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 412 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 441 >gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311] gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311] Length = 601 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 142/371 (38%), Positives = 224/371 (60%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ G S ++ + D GY +P+PIQ IP ++ D+ G AQTGTGKTA+F LP+L Sbjct: 50 FSEFGFSEALLKTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLL-- 107 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 E+ + +P L+L PTRELA QVA+ F+ Y + +L V + GG F +Q L R Sbjct: 108 -ERLQGDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINALRR 166 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR++DH +G L + + LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 167 GVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVV 226 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +E++++S+ +L+ P I + T A I H + Q S K L ++L++ Sbjct: 227 LFSATMPNEIRRLSKRYLREPAEITIKTKDKEARRIRHRCITM--QNSHKLEALNRVLEA 284 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T + IIF K + + SLE G V ++G++ Q R + + ++GT+ ++VA Sbjct: 285 V-TGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVA 343 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G A + + + + +E Sbjct: 344 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGDAILFITPRERRFVGNLE 403 Query: 362 KLIEKKVDWLN 372 + + + ++ ++ Sbjct: 404 RAVGQAIEPMD 414 >gi|240172264|ref|ZP_04750923.1| cold-shock DEAD-box protein, DeaD [Mycobacterium kansasii ATCC 12478] Length = 570 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 144/364 (39%), Positives = 216/364 (59%), Gaps = 10/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL + P V+ A+ GY PT IQ TIP ++ DV G+AQTGTGKTA+F +P+L+ Sbjct: 15 FVDLQIHPSVLRAIAGVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSK 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + LIL PTRELA QVA+ F +YG L V + GG + Q L R Sbjct: 75 IDVTSTATQ---ALILAPTRELALQVAEAFSRYGAYLPKLNVLPIYGGSSYAVQLAGLRR 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH RG L ++ ++ LV+DEAD ML MGF ++ I S P +Q Sbjct: 132 GAQIIVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVERILSDTPEYKQVA 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++ +L +P + ++TAE I ++ +K L ++L+ Sbjct: 192 LFSATMPPAIRKITTKYLHDPLEVTSKAKTATAENISQRYIQVAG--PRKMDALTRVLEV 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG---TIQL 298 + + I+F K+ + L +GFS AI+G+I Q+ R + ++ +EG I + Sbjct: 250 E-PFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQQQRERTITALREGGPNGIDI 308 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + + Sbjct: 309 LVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRPGAALLFVSPRERHLLK 368 Query: 359 AIEK 362 AIEK Sbjct: 369 AIEK 372 >gi|163802622|ref|ZP_02196513.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4] gi|159173510|gb|EDP58330.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4] Length = 459 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 227/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +GL+P ++ + Y TPIQ ++P++L + DV G +TG+GKTA+F L +L+ Sbjct: 6 FDQVGLNPALLETLESLNYTHMTPIQALSLPVILNQRDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ + + LV+DEADRMLDMGF + I P RQTL Sbjct: 123 GAHILVGTPGRILDHLDKGRINLEELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ +++P+ I+V + T+ ++H F ++ AL LL Sbjct: 183 LFSATFPKKIEQIAQRIMRSPEMIKVESTHDTSSIVQH-FYKVEGTEARDEALANLLLTH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L+ F ++ ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHKGFSVIELHGDLEQRERDQALTQFANKSVSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++D + IE Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359 Query: 362 KLIEKKV 368 + ++ V Sbjct: 360 EYLDMDV 366 >gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris StLB046] Length = 517 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 148/380 (38%), Positives = 227/380 (59%), Gaps = 13/380 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L +S + ++ G+ + TPIQ T+ + DV G AQTGTGKTA+F +P++ Sbjct: 3 NFSELNISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ ++ L++ PTRELA QV++ K G + + + + GG Q + L+ Sbjct: 63 KIDPKNPNIQ---ALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRALKN 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGRI DH NR L ++ ++ LV+DEAD ML+MGFI I I VP RQTL Sbjct: 120 KPQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDRQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++E F+++P+ +++ T E IE FV A +K L +LL S Sbjct: 180 LFSATMPPAIRKIAETFMKDPEIVKIKAKELTMENIEQFFVK--ATEREKFDALSRLLDS 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + IIF K+ V L +L +GF IHG++ Q R+ +L FKEG I +++A Sbjct: 238 QKP-ELAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLRIVE 356 Query: 362 KLIEKKVDWLNGDLSSLNPP 381 + +K+ ++ L PP Sbjct: 357 ETTKKR-------MTPLRPP 369 >gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC BAA-1200] gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC BAA-1200] Length = 444 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L ++ A++ AGY PTPIQ + +P L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FSDLNLDKNILSALVSAGYETPTPIQAQAVPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L + + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTRRSEKPGKGPRALVLTPTRELAAQVEKNALTYAKNMKWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D + GK+ +E+L++DEADRMLDMGFI I+ I + P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMDSGKVDFARLEVLILDEADRMLDMGFIEDIETIVAATPEDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ +NP+ +E+ + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKNPEVVEIERVDEQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAVTFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYIGRKL 369 >gi|126444520|ref|YP_001061297.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 668] gi|126224011|gb|ABN87516.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 668] Length = 465 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 152/393 (38%), Positives = 224/393 (56%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSALALTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 IDARRFDVQ---ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PKR+++ ++ + + T + LL + Sbjct: 187 LFSATYPDGIAKLSQQFLRHPKRVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E Y+HRIGRTGRA + G A +L + ++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIE 362 Query: 362 KLIEKKVDW-------LNGDLSSLNPPLEKIDI 387 + + ++V+W GD + L PP+E + I Sbjct: 363 QALAREVEWHPLAELKAGGD-APLLPPMETLQI 394 >gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase domain-containing protein [Xylella fastidiosa M23] gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23] gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 609 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGLS V+ AV GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+LT Sbjct: 11 FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 70 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 +L + + P+ L+L PTRELA QVA+ F++Y + + V + GG + Q L Sbjct: 71 TVLNQVK-----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAAL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGFI ++ + +P +RQ Sbjct: 126 KRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQ 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++++ +LQ+P + + T ++TA I + + K L ++L Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRY--WWVSGLHKLDALTRIL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +T IIF K L L+ +G + AI+G++ Q R + + K+G + ++ Sbjct: 244 EV-ETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V + + Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQ 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATHQPIEAMQ 375 >gi|71898665|ref|ZP_00680835.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] Length = 609 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGLS V+ AV GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+LT Sbjct: 11 FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 70 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 +L + + P+ L+L PTRELA QVA+ F++Y + + V + GG + Q L Sbjct: 71 TVLNQVK-----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAAL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGFI ++ + +P +RQ Sbjct: 126 KRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQ 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++++ +LQ+P + + T ++TA I + + K L ++L Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRY--WWVSGLHKLDALTRIL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +T IIF K L L+ +G + AI+G++ Q R + + K+G + ++ Sbjct: 244 EV-ETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V + + Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQ 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATHQPIEAMQ 375 >gi|206562042|ref|YP_002232805.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia J2315] gi|198038082|emb|CAR54030.1| ATP-independent RNA helicase [Burkholderia cenocepacia J2315] Length = 465 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 155/392 (39%), Positives = 227/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GYV TPIQ ++P+ L D+ A+TG+GKTA+F L +L Sbjct: 9 FSALPLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ +IL PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LDARRFDVQ---AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK I++ ++ + + T ++ + QLL Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEIKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNH 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIE 361 Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387 + +++V+W D S L PP+E + I Sbjct: 362 QAQKREVEWHPLAELKPADDSVLLPPMETLQI 393 >gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi 4047] gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi 4047] Length = 538 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 226/371 (60%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LS + AV+ AG+ K +PIQ TIPL L+ DV G AQTGTGKTA+F LP L Sbjct: 1 MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R + L++ PTRELA Q + ++G++ + V + GG E Q K L+ Sbjct: 61 N---KIRTADNTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGR+LD R L ++++E L++DEAD L+MGF+ I+ I S VP RQT Sbjct: 118 SGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADECLNMGFLEDIEAIISRVPDDRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ F+++P+ ++V T ++ +V Q +K + +L+ Sbjct: 178 LLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQ--EKFDTMTRLMD 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F K+ V + L+ +GF IHG++DQ R++++ +FK + ++V Sbjct: 236 VQQP-ELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+N+D+ E+Y+HRIGRTGRAG+ G++ T V+ ++ ++ I Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354 Query: 361 EKLIEKKVDWL 371 E L +K++ L Sbjct: 355 EHLTKKRMKPL 365 >gi|309972622|gb|ADO95823.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2846] Length = 613 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 230/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E++ K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A IE C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c] gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c] Length = 614 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGLS V+ AV GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+LT Sbjct: 17 FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 76 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 +L + + P+ L+L PTRELA QVA+ F++Y + + V + GG + Q L Sbjct: 77 TVLNQVK-----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAAL 131 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGFI ++ + +P +RQ Sbjct: 132 KRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQ 191 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++++ +LQ+P + + T ++TA I + + K L ++L Sbjct: 192 VALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRY--WWVSGLHKLDALTRIL 249 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +T IIF K L L+ +G + AI+G++ Q R + + K+G + ++ Sbjct: 250 EV-ETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDIL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V + + Sbjct: 309 VATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQ 368 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 369 IERATHQPIEAMQ 381 >gi|260774084|ref|ZP_05882999.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] gi|260611045|gb|EEX36249.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] Length = 395 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 148/372 (39%), Positives = 225/372 (60%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL+ ++ +V + GY PT IQ + IP++L+ D+ AQTGTGKTA FVLP+L Sbjct: 1 MSFTQLGLNEALIKSVAELGYQTPTTIQTQAIPVILKGQDLIAAAQTGTGKTAGFVLPIL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G+ R + R LIL PTRELA QVADN ++Y + LT + GG+ +AQ ++L Sbjct: 61 DRLMQGQTQRKKRIRALILVPTRELAIQVADNVKQYAQYTELTSLAMYGGVDEQAQKQQL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVL+ TPGR+LD + + + + IE++V+DEADRMLDMGFI I I +P Q Sbjct: 121 IDGVDVLVATPGRLLDMYAQRAVHFDEIEVVVLDEADRMLDMGFIEAINKIIQRLPTEAQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++++++ + I + ++ I + +K ALL L+ Sbjct: 181 FLLFSATLSNKVRELAKTAVGEAHEISIAAHQASKSNITQWLITV--DKDQKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +IF K L LEK+G + A H Q R ++L++FK G I+ + Sbjct: 239 HEYQ-WDQALIFIETKHGAAKLAAQLEKRGIAAEAFHSGRSQAVREQLLADFKAGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+ +AARG+DI ++ V N+D+P A+ Y+HRIGRTGRA G+A +LV+K++ K++ Sbjct: 298 IATGVAARGIDIDELPRVVNYDLPFPADEYVHRIGRTGRAEAQGEAISLVSKDNFKNLCM 357 Query: 360 IEK----LIEKK 367 IE LIE++ Sbjct: 358 IESRLGHLIERR 369 >gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 718 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LGL ++ AV G+ P+PIQ +TIP +L DV G+AQTGTGKTA+F LP++ Sbjct: 110 LSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPII 169 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 ++K R P+ L+L PTRELA QVAD F+++ + + V + GG + Q L Sbjct: 170 ARIDKSN---RSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGL 226 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA +++ TPGR++DH +G L +++++ LV+DEAD ML+MGF ++ I P +Q Sbjct: 227 RRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQ 286 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM + ++++S+ +L +P + V + T I ++ + K L ++L Sbjct: 287 VALFSATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNV--AHRNKLDALTRIL 344 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + IIF K L L +GFS AI+G+I Q+ R + + ++G + ++ Sbjct: 345 EVTE-FEAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDIL 403 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P+ E+YIHRIGRTGRAGR G+A V + + + + Sbjct: 404 VATDVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRS 463 Query: 360 IEKL 363 IE++ Sbjct: 464 IERV 467 >gi|119945503|ref|YP_943183.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] gi|119864107|gb|ABM03584.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 433 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 230/373 (61%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M +GLS +++ AV GY TPIQ + IP++ D+ AQTGTGKTA+F LP+L Sbjct: 1 MSVDAIGLSAELLKAVKACGYKNLTPIQQQAIPIIRSGSDLLASAQTGTGKTAAFTLPIL 60 Query: 61 TILEKGRARVRMPRT----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 IL K T LIL PTRELAAQVA N ++Y + LT ++ GG ++Q Sbjct: 61 DILAKNANEKPTTNTTIKALILTPTRELAAQVAANVKEYSQFLPLTSGVVSGGRSMDSQT 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ G DVL+ TPGR+L+H + +++++ L +DEADRMLD+GF+ IQ + + Sbjct: 121 KMLKVGVDVLVATPGRLLEHLTLRNVDLSHVKYLTLDEADRMLDLGFLTDIQKLMEAIKQ 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 QTL+FSAT +++++ +++ L PK +E++ +STA ++ + ++K LL Sbjct: 181 KHQTLMFSATFSNKVKTLAKQILTTPKTLEISPQNSTAGKVKQQVY--WVSETRKNELLS 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ ++ K ++F K++ L L+ G HG+ Q +R + + F EG++ Sbjct: 239 ELIGVKN-WKQVLVFAGTKESANLLAKELQLDGIKTAVCHGDKTQGARNQAIQKFTEGSV 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARGLDIPD+ +V NF +P AE+YIHRIGRT RAG+ G A +LV+ +D + Sbjct: 298 RVLVATDVAARGLDIPDLPYVVNFHLPFLAEDYIHRIGRTARAGKSGTAVSLVSPKDEQF 357 Query: 357 IDAIEKLIEKKVD 369 +D IE LI +K + Sbjct: 358 LDNIETLIGRKFE 370 >gi|115359843|ref|YP_776981.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD] gi|115285131|gb|ABI90647.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD] Length = 465 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 152/393 (38%), Positives = 230/393 (58%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GYV TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 9 FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LDTRRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + +++ + QLL Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDNSKIRQRFY---EVAETERLHAVGQLLNH 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361 Query: 362 KLIEKKVDWL-------NGDLSSLNPPLEKIDI 387 + ++++V+W G+ +L PP+E + I Sbjct: 362 QALKREVEWHPLAELKPAGN-DTLLPPMETLQI 393 >gi|168038086|ref|XP_001771533.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677260|gb|EDQ63733.1| predicted protein [Physcomitrella patens subsp. patens] Length = 684 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 222/367 (60%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +G P ++ + AG+ PTPIQ ++ P+ +Q D+ IA+TG+GKT +++P Sbjct: 150 MSFEAVGFPPDMLRELQIAGFKSPTPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPAF 209 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 LE+ R R+ P L+L PTRELA Q+ D K+G++ +T + GG P Q + + Sbjct: 210 LHLERHRNNSRLGPTVLVLAPTRELATQIQDECVKFGRSSRITSTCVYGGAPKVPQLRDI 269 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD++I TPGR+ D ++ + + LV+DEADRMLDMGF P I+ I + +P RQ Sbjct: 270 ERGADIVIATPGRLNDFLEVKRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVNEIPSRRQ 329 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 TL+++AT E++K++ + L NP ++ + NT A V Y K+ L+Q+ Sbjct: 330 TLMYTATWPKEVRKIAGDLLINPVQVNIGNTDELAANKSITQNVEVVVPYEKQ-RRLEQI 388 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+SQ+ IIFC+ K+ L +L + F AIHG+ Q R +LS F+ G + Sbjct: 389 LRSQEPGSKIIIFCSTKRMCDTLSRNLGRD-FGAAAIHGDKSQSERDFVLSQFRTGRTPI 447 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T +++D K+ Sbjct: 448 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFSEQDGKYAK 507 Query: 359 AIEKLIE 365 + K++E Sbjct: 508 ELIKVLE 514 >gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1] gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 616 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 221/370 (59%), Gaps = 11/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL ++ A+ GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 14 FGELGLPEPLLAALTAVGYETPSPIQAATIPALLSGRDVLGTAQTGTGKTAAFALPILSH 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ AR P+ L+L PTRELA QVA+ F++Y V + GG + Q L R Sbjct: 74 LDLKLAR---PQALVLAPTRELAIQVAEAFQRYAVQMPGFQVLPIYGGQGYGPQLHALRR 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L ++ + LV+DEAD ML MGFI ++ + VP RQ Sbjct: 131 GVHVVVGTPGRVIDHLERGTLDLSGLRNLVLDEADEMLRMGFIDDVEAVLKKVPDERQVA 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L+ P + + + ++T+ I + + K L ++L++ Sbjct: 191 LFSATMPPPIRRIAQTYLREPVEVTIASKTTTSANIRQRY--WFVSGMHKLDALTRILEA 248 Query: 242 Q--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M I+F K L + L+ +G + AI+G++ Q+ R + + K+G + ++ Sbjct: 249 EPFDAM---IVFARTKAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVL 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V + + A Sbjct: 306 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRA 365 Query: 360 IEKLIEKKVD 369 IE+ + ++ Sbjct: 366 IERATRQPIE 375 >gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava NJ9703] gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava NJ9703] Length = 469 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQK 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYIGRKL 369 >gi|170736688|ref|YP_001777948.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818876|gb|ACA93458.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia MC0-3] Length = 465 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 156/392 (39%), Positives = 228/392 (58%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GYV TPIQ ++P+ L D+ A+TG+GKTA+F L +L Sbjct: 9 FSALPLTPATLANLAQLGYVDMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLAR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ AR + +IL PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LD---ARSFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK I++ ++ + + T ++ + QLL Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEIKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNH 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +LV+ +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIE 361 Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387 + +++V+W D S L PP+E + I Sbjct: 362 QAQKREVEWHPLAELKPADDSVLLPPMETLQI 393 >gi|217970097|ref|YP_002355331.1| DEAD/DEAH box helicase [Thauera sp. MZ1T] gi|217507424|gb|ACK54435.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T] Length = 677 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 6/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADL L ++ A+ + GY P+PIQ IP +L HD+ G AQTGTGKTA+F LPML Sbjct: 16 LRFADLQLPAPLLSALAEVGYETPSPIQAACIPQLLAGHDILGEAQTGTGKTAAFALPML 75 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ R P+ L+L PTRELA QVA+ F KY + N V + GG Q ++L Sbjct: 76 AKLDLADTR---PQVLVLTPTRELAIQVAEAFAKYAHHLKNFHVLPIYGGQSMVVQLRQL 132 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA V++ TPGR++DH R L ++ ++ +V+DEAD ML MGFI ++ I P RQ Sbjct: 133 SRGAQVVVGTPGRVMDHLERESLKLDALKAIVLDEADEMLRMGFIDDVEWILEHTPAERQ 192 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + +++V+ L+NP+ I++ +ST I + + K L ++L Sbjct: 193 TALFSATMPNVIREVARRHLRNPQEIKIRAATSTVAKISQRY--WLVRGVDKLDALTRIL 250 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++ ++F K L L +G++ A++G+++Q R +++ K G + ++ Sbjct: 251 DAEESFDAALVFVRTKIATEELADKLAARGYAAAALNGDMNQGLRERVIEQLKNGALDIV 310 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+P V HV N+D+P E Y+HRIGRTGRAGR G A VA + + + Sbjct: 311 IATDVAARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGREGVAILFVAPRETRMLKM 370 Query: 360 IEKLIEKKV 368 IE+ + + Sbjct: 371 IERATRQPI 379 >gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC 51867] Length = 718 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LGL ++ AV G+ P+PIQ +TIP +L DV G+AQTGTGKTA+F LP++ Sbjct: 110 LSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPII 169 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 ++K R P+ L+L PTRELA QVAD F+++ + + V + GG + Q L Sbjct: 170 ARIDKSN---RSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGL 226 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA +++ TPGR++DH +G L +++++ LV+DEAD ML+MGF ++ I P +Q Sbjct: 227 RRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQ 286 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM + ++++S+ +L +P + V + T I ++ + K L ++L Sbjct: 287 VALFSATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNV--AHRNKLDALTRIL 344 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + IIF K L L +GFS AI+G+I Q+ R + + ++G + ++ Sbjct: 345 EVTE-FEAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDIL 403 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P+ E+YIHRIGRTGRAGR G+A V + + + + Sbjct: 404 VATDVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRS 463 Query: 360 IEKL 363 IE++ Sbjct: 464 IERV 467 >gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC 23970] gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC 23970] Length = 462 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAD-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYIGRKL 369 >gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Dixon] gi|71901364|ref|ZP_00683458.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12] gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Dixon] gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12] Length = 609 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGLS V+ AV GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+LT Sbjct: 11 FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 70 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 +L + + P+ L+L PTRELA QVA+ F++Y + + V + GG + Q L Sbjct: 71 TVLNQVK-----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAAL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGFI ++ + +P +RQ Sbjct: 126 KRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQ 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++++ +LQ+P + + T ++TA I + + K L ++L Sbjct: 186 VALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRY--WWVSGLHKLDALTRIL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +T IIF K L L+ +G + AI+G++ Q R + + K+G + ++ Sbjct: 244 EV-ETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDIL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V + + Sbjct: 303 VATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQ 362 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 363 IERATHQPIEAMQ 375 >gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 514 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 142/365 (38%), Positives = 226/365 (61%), Gaps = 11/365 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF +L L+ K++ A+ D G+ +P+ IQ + IP++LQ DV G A+TGTGKT ++ P++ Sbjct: 1 MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLQGSDVIGQAETGTGKTLAYGAPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + +V L+L PTRELA QV D + GK + + + GG+ + Q K ++ Sbjct: 61 NNIGSNEGKVF---CLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D++I TPGR+LD R L +N+++ LV+DEAD MLDMGFI I+ I + RQT Sbjct: 118 RGVDIIIGTPGRVLDLIKRDILRLNDVKYLVLDEADEMLDMGFIDDIKEIINHTNKERQT 177 Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237 ++FSATM DE++ +++ +++ + K I + + T T++H + V ++ C +L Sbjct: 178 MMFSATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRIL-- 235 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + IIFC KK V L +++ +G++V +HG++ Q R+ L FKEG + Sbjct: 236 ---DVEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLD 292 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARG+DI ++ HV N+++P E+Y+HRIGRTGRA R G A+TLV + + Sbjct: 293 FLVATDVAARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPAL 352 Query: 358 DAIEK 362 IE+ Sbjct: 353 KRIER 357 >gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium yellowstonense SS-5] gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium yellowstonense SS-5] Length = 405 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 226/374 (60%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LS + + ++ + GY KPT IQ K IP V+ D+ AQTGTGKTA+F +P I Sbjct: 8 FKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVP---I 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +EK + + + LIL PTRELA QVA ++ GKN + + GG Q L++G Sbjct: 65 VEKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKKG 124 Query: 123 ADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +DV++ TPGR+ D RG L ++N+++ V+DEADRML+MGFI I+ I S +P RQ L Sbjct: 125 SDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQIL 184 Query: 182 LFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 LFSATM E+ +++E FL +N + I+V T E I+ V ++ K +L Sbjct: 185 LFSATMPKEILELAEEFLNENYETIKVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVL--- 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 SQ+ + IIF K L L ++GF+ AIHG+ Q+ R +L NF+ G +++ Sbjct: 242 --SQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V V N+ +P AE+YIHRIGRTGRAGR G A +++ + K + Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTSSEDKQLQ 359 Query: 359 AIEKLIEKKVDWLN 372 I+K + ++ +N Sbjct: 360 NIQKKTKANIEVIN 373 >gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13] gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13] Length = 465 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 149/395 (37%), Positives = 234/395 (59%), Gaps = 31/395 (7%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL P + A+ D Y KPTP+Q K IP ++ D+ +QTG+GKTA+F+LP L Sbjct: 1 MTFEALGLHPLIQKALADIHYDKPTPVQEKAIPAGIEGKDLLVSSQTGSGKTAAFMLPAL 60 Query: 61 TIL------------------------EKGRARVRMPRTLILEPTRELAAQV---ADNFE 93 EK R P+ L+L PTRELA Q+ ++++ Sbjct: 61 HRFASVPFEKSDKKTFNQKRQAARAKGEKVRYEPAHPKMLVLTPTRELAMQIVQSSEDYS 120 Query: 94 KYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153 Y K++ TVA+L GG+P+ Q + L + ++L+ TPGR++DH + GK+ + +EILV+D Sbjct: 121 AYLKHFR-TVAIL-GGMPYPKQMQLLAKNPEILVATPGRLIDHMHSGKIRFDQLEILVLD 178 Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213 EADRMLDMGFI I+ I + P TRQT+LFSAT+ + ++ ++P+ I +++ +S Sbjct: 179 EADRMLDMGFIDDIETIIAATPETRQTMLFSATLDGIVGNMARKITRDPELIHIHSVASR 238 Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273 E I+ + K LL LL + ++ ++F K++ + L GFS Sbjct: 239 HENIDQ-MIHFVDDLPHKNRLLDHLLHDR-SLDQALVFTATKRDADIVADRLAIAGFSAA 296 Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333 A+HG++ Q +R + L+ + G ++++VA+D+AARG+DIP++ HV N+D+P E+Y+HRI Sbjct: 297 ALHGDMPQGARNRTLTKLRRGQVKILVATDVAARGIDIPNITHVVNYDLPKFPEDYVHRI 356 Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 GRTGRAGRHG A +LV D ++ IE+ ++ + Sbjct: 357 GRTGRAGRHGLAISLVNHNDNNNVRKIERFTKQSI 391 >gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus TB-2] gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus TB-2] Length = 460 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 145/363 (39%), Positives = 229/363 (63%), Gaps = 11/363 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L +++ + + G+ KP+PIQ K IP++L+ DV AQTGTGKTA+F LP+L Sbjct: 1 MTFKDFKLKKEIIKRLEEIGFEKPSPIQEKAIPVILEGKDVVAQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + ++K + LI+ PTRELA QV++ ++GK + A + GG + Q K +E Sbjct: 61 SKIKKDE------KALIITPTRELAIQVSEEIFRFGKYLGVHTATVYGGSSYNRQIKHIE 114 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +I TPGR+LD GK+ + + +++DEAD MLDMGF+ I+ I VP RQT Sbjct: 115 -NSQFIIATPGRLLDLLKSGKIDIAP-KYVILDEADEMLDMGFLDDIKEIFKFVPSNRQT 172 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + ++ +++ L+NP+ I + T E I+ F ++ +K AL++ L+ Sbjct: 173 LLFSATMPEPIKNLAKTILKNPEFITITRKQVTNENIKEYFYVI-DEFERKDALIR-LID 230 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ K+ I+FC KK+V ++ L GF +HG++DQR R +++ FK I+++V Sbjct: 231 YKNPTKS-IVFCRTKKDVDDIAEFLSGAGFDAKGLHGDMDQRKREEVIRGFKSDRIEILV 289 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ +V HVFN+ +P E+Y+HRIGRTGRAG+ G A +LV + + ++ I Sbjct: 290 ATDVAARGLDVNNVSHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALNRI 349 Query: 361 EKL 363 +K+ Sbjct: 350 QKI 352 >gi|77917943|ref|YP_355758.1| cold-shock inducible ATP-independent RNA helicase [Pelobacter carbinolicus DSM 2380] gi|77544026|gb|ABA87588.1| ATP-dependent RNA helicase CsdA [Pelobacter carbinolicus DSM 2380] Length = 583 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 152/367 (41%), Positives = 226/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L P++ + + GY P+PIQ ++IP +L+ D+ G AQTGTGKTA+F LP+L+ Sbjct: 9 FAELSLCPEINRVIEEIGYETPSPIQARSIPPLLEGRDLLGQAQTGTGKTAAFALPLLSR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ +R P+ L+L PTRELA QVA+ + Y ++ V + GG Q ++L+R Sbjct: 69 LD---LSLRSPQVLVLTPTRELALQVAEAVQTYARHLQGFHVLPVYGGQNMGQQLRQLQR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI DH RG L ++ + +V+DEAD ML MGFI ++ I P RQT Sbjct: 126 GAHVVVGTPGRIQDHLRRGTLKLDRLSCVVVDEADEMLKMGFIDDVEQILEHAPEQRQTA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +E+ KV+ L+ P + + +ST ETI F +K L ++L++ Sbjct: 186 LFSATMPNEVLKVARRHLREPVEVRIKAKTSTVETISQRFWQVRG--VRKLDALTRILEA 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D + I+F K V L LE +GFS A++G++ Q R K + K G++ ++VA Sbjct: 244 ED-IDAMIVFVRTKIATVELAEKLEARGFSSAALNGDMTQALREKTVERLKSGSLDIVVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A VA + + + AIE Sbjct: 303 TDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGREGSAILFVAPRERRMLAAIE 362 Query: 362 KLIEKKV 368 + +K+ Sbjct: 363 QATRQKI 369 >gi|325105194|ref|YP_004274848.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] gi|324974042|gb|ADY53026.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] Length = 608 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 230/367 (62%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+ +V A+ + G+ PTPIQ IP++L +D G+AQTGTGKTA+F LP+L Sbjct: 4 FNELGIRHDIVNAITELGFTNPTPIQESAIPVLLSGSNDFVGLAQTGTGKTAAFGLPLLE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +++ + P+ LIL PTREL Q++++ + + KN N+ V + GG Q ++++ Sbjct: 64 LIDNTKNH---PQALILCPTRELCLQISNDLKNFSKNLKNVNVVAVYGGANIVNQLREIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD NR + +N+ +V+DEAD ML+MGF I +I S P T++T Sbjct: 121 RGVQIVVATPGRMLDIINRKAIDFSNVNYVVLDEADEMLNMGFQDDINDILSTTPDTKKT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+++++EN++ NP + V +S IEH + A+ K A ++++ Sbjct: 181 WLFSATMPKEVRRIAENYMTNPHELTVGKQNSGNANIEHEYYIVKAR--DKYAAFKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+FC K + SL K G++ ++HG++ Q+ R K++ ++E ++QL++ Sbjct: 239 FNPDIF-GIVFCRTKIETQEIAESLVKDGYNADSLHGDLSQQQRDKVMKRYREKSLQLLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N+ +P+ ENY HR GRT RAG+ G + ++ +I I I Sbjct: 298 ATDVAARGIDVNNVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSREIHKIRQI 357 Query: 361 EKLIEKK 367 EK+I K+ Sbjct: 358 EKVIGKQ 364 >gi|171315596|ref|ZP_02904831.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] gi|171099267|gb|EDT44026.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] Length = 465 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 152/393 (38%), Positives = 230/393 (58%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GYV TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 9 FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LDTRRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH RG L ++ + LV+DEADRMLDMGF I + + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T +++ + QLL Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDNSKIRQRFYEVT---ETERLHAVGQLLNH 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361 Query: 362 KLIEKKVDWL-------NGDLSSLNPPLEKIDI 387 + ++++V+W G+ +L PP+E + I Sbjct: 362 QALKREVEWHPLAELKPAGN-DTLLPPMETLQI 393 >gi|288924465|ref|ZP_06418438.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] gi|288344188|gb|EFC78744.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] Length = 459 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 149/361 (41%), Positives = 217/361 (60%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ A+ + GY P+PIQ+ TIP +L+ DV G+AQTGTGKTA+F LP+L+ Sbjct: 20 FHDLGLGTAVLRALTELGYEVPSPIQVGTIPALLEGRDVVGLAQTGTGKTAAFALPILSR 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R + L+L PTREL QVA+ F +Y + L V + GG + Q + R Sbjct: 80 ID---VRSTSTQALVLAPTRELVLQVAEAFGRYAHHLPGLHVLPVYGGQAYAPQLAGIRR 136 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L + + +LV+DEAD ML MGF + I + P +Q Sbjct: 137 GAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVA 196 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++S +L++P I V + TA F+ T A K AL + L Sbjct: 197 LFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFL-TVAGPRKMDALTRVL--E 253 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K ++ L +GF+ AI+G++ Q R K+++ ++G + L+VA Sbjct: 254 VEPFEAMIIFVRTKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLLVA 313 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ V HV N+D+P E+Y+HRIGRTGRAGR G+A LV + + AIE Sbjct: 314 TDVAARGLDVERVTHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAIE 373 Query: 362 K 362 K Sbjct: 374 K 374 >gi|225166117|ref|ZP_03727846.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2] gi|224799638|gb|EEG18138.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2] Length = 606 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 221/361 (61%), Gaps = 7/361 (1%) Query: 4 ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63 A+LGLSP+++ AV G+ + +PIQ IPL+L DV G + TG+GKTA+F LP + Sbjct: 1 AELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAI--- 57 Query: 64 EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLERG 122 E+ +++ + LIL PTRELA QVA+ K + + I GG +E Q + L G Sbjct: 58 ERVDTKLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAG 117 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A V+I TPGR++DH RG L ++ + ++++DE DRMLDMGF I++I VP RQ+L Sbjct: 118 AQVVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLF 177 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++ + F+ NP +++ T +A ++ + K +L +L+ Sbjct: 178 FSATMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEV--DRRSKLEVLTRLIDLN 235 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + GIIFC+ K V L +L +G++ +HG+I Q R + + FK + ++A+ Sbjct: 236 D-FRYGIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIAT 294 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ D+ VFNFD+PN AE+Y HRIGRTGRAGR GKAFT V+ ++ + ++ + Sbjct: 295 DVAARGLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVR 354 Query: 363 L 363 Sbjct: 355 F 355 >gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1] gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1] Length = 615 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 226/373 (60%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGLS V+ AV GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+LT Sbjct: 17 FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 76 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 +L + + P+ L+L PTRELA QVA+ F++Y + + V + GG + Q L Sbjct: 77 TVLNQVK-----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAAL 131 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGFI ++ + +P +RQ Sbjct: 132 KRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQ 191 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++++ +LQ+P + + T ++TA I + + K L ++L Sbjct: 192 VALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRY--WWVSGLHKLDALTRIL 249 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +T IIF K L L+ +G + AI+G++ Q R + + K+G + ++ Sbjct: 250 EV-ETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDIL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A V + + Sbjct: 309 VATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQ 368 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ + Sbjct: 369 IERATHQPIEAMQ 381 >gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43] Length = 475 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 150/390 (38%), Positives = 227/390 (58%), Gaps = 34/390 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 41 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 100 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 + G R R P+ L+L PTRELA QV YGK+ Sbjct: 101 FAQLQKTQALQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 160 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 161 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 220 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I I + P +RQT+LFSAT+ ++ ++ L++P+RIE+ + S+ A Sbjct: 221 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 280 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + IIF K + L L GF A Sbjct: 281 QTVHYV-----DDRDHKDRLLDHLLRDV-ALDQAIIFTATKIDADQLAGRLADAGFQSAA 334 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 335 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 394 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RTGRAGR G A +LV + + IE+ + Sbjct: 395 RTGRAGRSGTAVSLVHHAEQGALKRIERFV 424 >gi|226315242|ref|YP_002775138.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] gi|226098192|dbj|BAH46634.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] Length = 575 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 151/364 (41%), Positives = 218/364 (59%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LG+ +++ A+ G +PTPIQ K IP+VL+ DV AQTGTGKT +FVLP Sbjct: 6 DFLRLGIHKELIDALQANGITEPTPIQEKAIPVVLEGKDVIAQAQTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ILE + + LIL PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILENADPQATHVQALILTPTRELALQITAEVKKLTEKLEDIQVLAVYGGQDVNQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V+I TPGR+LDH RG + ++ + + V+DEAD+ML MGF+P +++I + PF +QT Sbjct: 123 GKIHVVIATPGRLLDHLRRGTIDLSQVSMFVLDEADQMLHMGFLPEVEDIMANTPFEKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM++++Q +++ F+Q P+ I+V T + I V T + K A L LL Sbjct: 183 LLFSATMSEQVQALAKRFMQKPENIKVQGKRITLDDIRQIAVETTDRA--KQATLCSLLD 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q +IFC K+ L L+ + +HG++ Q R ++ F+E IQ +V Sbjct: 241 EQRPFL-AVIFCRTKRRASKLNAELQGLDYMSDELHGDLSQAKREDVMKRFREARIQYLV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P ++YIHRIGRTGRA G AFTLV +D + I Sbjct: 300 ATDVAARGLDVEGVTHVFNYDIPEDVDSYIHRIGRTGRAKEKGTAFTLVTAKDWGQLREI 359 Query: 361 EKLI 364 E+ I Sbjct: 360 EQGI 363 >gi|222054856|ref|YP_002537218.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32] gi|221564145|gb|ACM20117.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32] Length = 456 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 161/434 (37%), Positives = 236/434 (54%), Gaps = 22/434 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L +V+ + D G+ TPIQ K +P L DV G AQTGTGKTA+F++ + Sbjct: 1 MKFTDLNLPEQVLKGIADTGFTDCTPIQEKALPPALLGKDVAGQAQTGTGKTAAFLISLF 60 Query: 61 T-ILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 T +L + +A PR LIL PTREL Q+ + + GK + + GG+ + Q Sbjct: 61 TRLLNQEKAGTEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQKNA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPF- 176 L+ G D++I TPGR++D+ + + NIE LVIDEADRM DMGFI ++ I L PF Sbjct: 121 LKEGVDIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFD 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ L+FSAT+ + +++ F+ P+++ V TAE +E Y K+ L Sbjct: 181 ARQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVL---YHVARKEKFPLL 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L + M +IF N K+ L L F I G+++QR RM+IL +FK G + Sbjct: 238 LGLLRKKGMDRTMIFVNTKREAEYLYDRLNANEFPARVISGDVEQRKRMRILEDFKNGKL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +M+A+D+A+RGL I V HV N+D+P AE+Y+HRIGRT RAG GKA +L ++ H Sbjct: 298 PIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGAFH 357 Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNY 413 I+ I + I++K V+W +L H++ R K P P+ + +N+ Sbjct: 358 IEDIHEYIKEKIPVEWAEDELFV------------HDYKRTKPRPKPESKPAAKPKGRNH 405 Query: 414 SSQKSHIPLKESEK 427 P + EK Sbjct: 406 GKSGGKAPARTVEK 419 >gi|315182662|gb|ADT89575.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218] Length = 406 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 148/361 (40%), Positives = 217/361 (60%), Gaps = 11/361 (3%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMP-----R 74 G PT IQ + IP VL+ DV AQTGTGKTA+F LP++ + R P R Sbjct: 9 GIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRFVDHPLQ-REPNSKDIR 67 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 L+L PTRELA QV DN + Y + L + GG Q + L GAD+LI TPGR+L Sbjct: 68 ALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNLRGGADILIATPGRLL 127 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 DH + L + N E LV+DEADRMLDMGF+P IQ + + RQTL FSAT +++ Sbjct: 128 DHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHERQTLFFSATFDSKIKAF 187 Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254 + +QNP ++V +STA+T+E +K LL L+ S++ + ++F Sbjct: 188 AHRMMQNPVEVQVTPSNSTADTVEQMVYPV--DKKRKRELLAYLIGSRN-WQQVLVFTRT 244 Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 K+ L L+ G +I+G+ Q +R K L +FK G ++ ++A+D+AARG+DI + Sbjct: 245 KQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGIDIAQL 304 Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLN 372 V NFD+P +AE+Y+HRIGRTGRAG+ G A +L++ ++ ++AIE+L++K++ +WL Sbjct: 305 EQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLLEAIERLLDKRLPQEWLK 364 Query: 373 G 373 G Sbjct: 365 G 365 >gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972] gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972] Length = 632 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ D G+V PTPIQ IPL+L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 66 NKLDLNQYK---PQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D +R +L ++ V+DEAD ML MGF+ + I P T Q Sbjct: 123 KSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++ + + FL++P R++V + T +E + +K + +LL Sbjct: 183 RVLFSATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 360 IERVTRSSME 369 >gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus AHT 1] Length = 470 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 147/372 (39%), Positives = 222/372 (59%), Gaps = 10/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D +S V+ AV + G+ + TPIQ + IP L+ D+ G A TGTGKTA+F +PM+ Sbjct: 4 FNDFAVSENVLQAVSNMGFEEATPIQEQAIPTALKGLDLIGQAHTGTGKTAAFGVPMVEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LEK + V+ L++ PTRELA QVA+ K G+ + + GG Q + L++ Sbjct: 64 LEKNGSTVQ---ALVVTPTRELAVQVAEELNKIGQYKGIRTLPVYGGQDIGRQIRGLQKR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH R + + + ++V+DEAD ML+MGFI I+ I P RQTLL Sbjct: 121 PQIIVGTPGRLLDHIRRRTVRLGQVSMVVLDEADEMLNMGFIEDIEAILQETPQERQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQLLQ 240 FSATM +++++ F+++P++I V + T E H + ++ C LL Q Sbjct: 181 FSATMPGPIEQLARRFMRDPQKISVRSKEVTVPNTEQFHMVMEERQKFDVLCRLLD--TQ 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S D I+F K+ V L +L K+G+S IHG++ Q R ++ FK+G+I ++V Sbjct: 239 SPDL---AIVFGRTKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG G A T V+ ++ H+ I Sbjct: 296 ATDVAARGLDITGVTHVYNFDIPQDPESYVHRIGRTGRAGNTGMAVTFVSNREVGHLRTI 355 Query: 361 EKLIEKKVDWLN 372 E + ++ L+ Sbjct: 356 EYGTKSRIPRLS 367 >gi|320159208|ref|YP_004191586.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O] gi|319934520|gb|ADV89383.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O] Length = 398 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 148/362 (40%), Positives = 218/362 (60%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL + A+ GY KPT IQ + IP++L+ D+ AQTGTGKTASFVLPML Sbjct: 1 MSFTQLGLCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPML 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G+ + + R LIL PTRELA QV + ++YG+N L + GG+ +AQ + L Sbjct: 61 EKLRHGQTQKKKRTRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + IE+LV+DEADRMLDMGFI I I +P Q Sbjct: 121 IEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++ ++++ + NP I + ++ IE + +K ALL L+ Sbjct: 181 HLLFSATLSNKVRDLAKSAIHNPFEISIAANQASKSNIEQWIITV--DKDQKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 K-ENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 V++ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A +LV+K++ K++ Sbjct: 298 VSTGVAARGIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|323497181|ref|ZP_08102201.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326] gi|323317756|gb|EGA70747.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326] Length = 458 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 150/360 (41%), Positives = 221/360 (61%), Gaps = 7/360 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P+++ V GY + TPIQ + +PLVL DV G +TG+GKTA+F L +L+ Sbjct: 5 FKTLSLRPELLETVASLGYSEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGVLSN 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 65 LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ ++ + LV+DEADRMLDMGF I I S P RQ+L Sbjct: 122 GAHILVGTPGRILDHLSKGRINLDELNTLVLDEADRMLDMGFEDAIDAIISAAPTQRQSL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++ ++E + P+ ++V + T TIE F A K AL LL Sbjct: 182 LFSATFPANIKTLAEKVMSEPEMVKVESTHETT-TIEQRFYALEGSEEKDNALETLLLVH 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L+ F ++ ++VA Sbjct: 241 KP--ESSVVFCNTKKEVQNVTDELNHRGFSVVELHGDMEQREREQALTMFANKSVSILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++++ ++ IE Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFYSEKEHYRVERIE 358 >gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 642 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 149/393 (37%), Positives = 234/393 (59%), Gaps = 15/393 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL+ V+ A+ D GY +P+PIQ IP ++ HD+ G AQTGTGKTA+F LP+L+ Sbjct: 21 FSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSR 80 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE G R + L+L PTRELA QVA+ ++Y + + V + GG +E Q + L R Sbjct: 81 LEAGN---RNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRR 137 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D R L ++ ++ LV+DEAD ML MGFI + I P RQ Sbjct: 138 GAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPAGRQVA 197 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V++ L+ PK I++ + ++TA TI + + K + +LL+ Sbjct: 198 LFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLH--KLDAMTRLLEV 255 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++F K L L +G + A+HG+I Q+ R + + ++G + +++A Sbjct: 256 E-PYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 314 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G+A VA + + + AIE Sbjct: 315 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 374 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 + ++ + P E DI QH A+ Sbjct: 375 HATRQAIEPMK------MPSTE--DINQHRLAK 399 >gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218] Length = 632 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ D G+V PTPIQ IPL+L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 66 NKLDLNQYK---PQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D +R +L ++ V+DEAD ML MGF+ + I P T Q Sbjct: 123 KSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++ + + FL++P R++V + T +E + +K + +LL Sbjct: 183 RVLFSATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 360 IERVTRSSME 369 >gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701] gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701] Length = 645 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 221/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA GL +++ AV D GY P+PIQ IP ++ D+ G AQTGTGKTA+F LP+L Sbjct: 87 FAGFGLGAEILAAVADCGYSDPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAR 146 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 L+ + R P+ L+L PTRELA QVA+ F Y K + V + GG F Q +L+R Sbjct: 147 LDPQQ---RTPQVLVLTPTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKR 203 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH +G L ++ + LV+DEAD ML MGFI ++ + +P RQ + Sbjct: 204 GVQIVVGTPGRVMDHMRQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQLPQQRQVV 263 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S +LQNP + + + TI + + ++K L ++L++ Sbjct: 264 LFSATMPSEIRRLSRKYLQNPAEVTIQQKGAENSTIRQRHLVVHG--AQKLEALTRVLEA 321 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + + IIF K + + +LE+QG+ V ++G++ Q R + + + G + ++VA Sbjct: 322 ESS-EGVIIFARTKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVA 380 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D+P +E Y+HRIGRTGRAGR G A + + + + +E Sbjct: 381 TDVAARGLDVDRITLVINYDIPFDSEAYVHRIGRTGRAGRQGDAILFLTPRERRFLGGLE 440 Query: 362 KLIEKKV 368 + + K + Sbjct: 441 RAVGKAI 447 >gi|91794302|ref|YP_563953.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91716304|gb|ABE56230.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 419 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 149/381 (39%), Positives = 223/381 (58%), Gaps = 14/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59 M F L P ++ ++ YV PTP+Q + IP +L HD+ AQTGTGKTA+F +P+ Sbjct: 10 MSFTAFNLHPVLLASIKAQSYVDPTPVQRQAIPEILLGHDLLVGAQTGTGKTAAFAIPLV 69 Query: 60 --LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + + ++ + LIL PTRELA QV N + L A+ GG Q + Sbjct: 70 HKLLMQSEEAHQGKVIKGLILTPTRELALQVQHNIHALLQGTELKHAIAYGGASIGEQVR 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + G D+L+ TPGR+LDH + + ++E LV DEADRMLDMGF I ++ +P Sbjct: 130 SFKAGVDILVATPGRLLDHLRHKAVSLKHVEYLVFDEADRMLDMGFKDEIVDLLKRLPKQ 189 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE---HCFVATYAQYSKKCAL 234 RQTLLFSAT+ D + S+N L PK IEV ++ IE +C +K +L Sbjct: 190 RQTLLFSATLNDSIFSFSKNLLNEPKVIEVAKANTKVAKIEERVYC-----VDEERKLSL 244 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L LL S++ + ++F K+ NL ++K G A HG++ Q R +L +F + Sbjct: 245 LCHLL-SKERWQQVLVFSRTKQGADNLACQMQKSGIEALAFHGDLSQSVRESVLKDFSQA 303 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +Q++VA+D+AARGLDI D+ +V N+++P+ +E+YIHRIGRTGRAG+ G A TL A ED Sbjct: 304 KVQVLVATDVAARGLDIEDLNYVVNYELPHVSEDYIHRIGRTGRAGKDGIAVTLFAIEDT 363 Query: 355 KHIDAIEKLIEKKV--DWLNG 373 + ++E L+++++ W G Sbjct: 364 AKLMSLETLLDRRLPQQWYPG 384 >gi|27367363|ref|NP_762890.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6] gi|27358932|gb|AAO07880.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6] Length = 398 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 148/362 (40%), Positives = 218/362 (60%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL + A+ GY KPT IQ + IP++L+ D+ AQTGTGKTASFVLPML Sbjct: 1 MSFTQLGLCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPML 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G+ + + R LIL PTRELA QV + ++YG+N L + GG+ +AQ + L Sbjct: 61 EKLRHGQTQKKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + IE+LV+DEADRMLDMGFI I I +P Q Sbjct: 121 IEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++ ++++ + NP I + ++ IE + +K ALL L+ Sbjct: 181 HLLFSATLSNKVRDLAKSAIHNPFEISIAAKQASKSNIEQWIITV--DKDQKSALLSHLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 239 K-ENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 V++ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A +LV+K++ K++ Sbjct: 298 VSTGVAARGIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCM 357 Query: 360 IE 361 IE Sbjct: 358 IE 359 >gi|317153822|ref|YP_004121870.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944073|gb|ADU63124.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 421 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 221/370 (59%), Gaps = 6/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F ++ + G+ PTPIQ IP VL+ DV G+AQTGTGKTA+F LP+L Sbjct: 1 MTFDHFSFDLRINAGIKSCGFTVPTPIQTLAIPEVLKGRDVMGLAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L RA + P R L+L PTRELA Q+ + F+ +G+ + + + GG+ F Q Sbjct: 61 QRLLDSRATGQGPIRCLVLAPTRELALQIQETFDVFGRQAGIRSSCVFGGVGFNPQINA- 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 R A V++ PGR++ +G + +++++ LV+DEADRMLDMGF+P ++ I S +P RQ Sbjct: 120 ARKATVVVACPGRLVALLQQGDIRLDHVDTLVLDEADRMLDMGFMPDLKRILSRLPAKRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM +++K+++ L +P R++V+ + E++ F K LL+ LL Sbjct: 180 NLLFSATMPADIRKLADTILVDPARVQVSN-TVPVESVTQTFYPVADHL--KGGLLEALL 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S + ++ ++F K NL L +G S + GN+ Q R + L F+ G ++M Sbjct: 237 GSMER-ESVLVFTRTKHRAKNLAKRLGLRGMSATFLQGNMSQNQRQRALDGFRCGDFEIM 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D + HV NFD P+ AE Y HRIGRTGRAGR G+A +L+ +ED + Sbjct: 296 VATDIAARGIDCDRISHVINFDAPDTAEAYTHRIGRTGRAGRTGEALSLITREDHLVVRD 355 Query: 360 IEKLIEKKVD 369 IE+++ + VD Sbjct: 356 IERVLRRSVD 365 >gi|325280488|ref|YP_004253030.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324312297|gb|ADY32850.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM 20712] Length = 432 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 144/372 (38%), Positives = 220/372 (59%), Gaps = 5/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L +S +++ A+ DAG+ +PTPIQ + P++ DV GIAQTGTGKT ++++P+L Sbjct: 1 MTFNELNISKQILMALEDAGFEQPTPIQERAFPVIRSGKDVIGIAQTGTGKTLAYLIPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L A+ PR L++ PTREL QV ++ E + ++ + GG Q + Sbjct: 61 MKLH--YAQGNYPRALVIVPTRELVVQVCESVELLTEYMDIRCVGIYGGTNIRTQQAAVY 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR +D + G + I+ +V+DEADR++DMGF+P +++I +VP QT Sbjct: 119 EGVDLLVTTPGRFMDIYMNGIIRTPQIKTVVVDEADRLMDMGFMPQLRSILEVVPEKHQT 178 Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT + + +++ FL P RIE P++ E + K LL+ LL Sbjct: 179 LLFSATFSTTIAELAAEFLAPEPVRIETGNPTTPVELVTQ-LRYDLPNIQTKINLLKLLL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + +IF KKN + L + + +H N Q SR+ L FKEG ++ Sbjct: 238 TDKEEFRRVMIFTETKKNADRIVERLGDHWKGELSVLHSNKAQNSRLNALKVFKEGKTRI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MV+SD+AARG+D+ DV HV NFD+P+ E YIHRIGRT RAG+ G A + V +++ + Sbjct: 298 MVSSDVAARGIDVQDVSHVINFDIPSIPEEYIHRIGRTARAGKEGTAISFVTEKEEPKFE 357 Query: 359 AIEKLIEKKVDW 370 IEKLI ++V+W Sbjct: 358 EIEKLIGQQVEW 369 >gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119] gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus hominis subsp. hominis C80] gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119] gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus hominis subsp. hominis C80] Length = 503 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 146/384 (38%), Positives = 231/384 (60%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S K V + + G+ +PTPIQ ++IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDKTVKTLEEMGFKEPTPIQKESIPYTLEGKDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G++ V+ LIL PTRELA QVA+ ++ + N+ V + GG+P + Q K L+R Sbjct: 63 KV-VGKSGVQ---ALILAPTRELAMQVAEQLREFSRGQNIQVVTVFGGMPIDRQIKALKR 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L N+I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++P+ ++ + I+ + T + +K L Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++ +++ + +L PP K Sbjct: 356 EEVNDRR-------MKALRPPHRK 372 >gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 603 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 232/370 (62%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G S ++ + + GY +PTPIQ +IP ++ D+ G AQTGTGKTA+F LP+L Sbjct: 53 FEGFGFSEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLL-- 110 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 E+ ++ R P+ L+L PTRELA QVA++F+ Y + + N+ + + GG F +Q L+R Sbjct: 111 -ERINSKERNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYSLKR 169 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++++ TPGR++DH +G L ++++ LV+DEAD ML MGFI I+ I +P RQ + Sbjct: 170 GVEIIVGTPGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMV 229 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++K+S+ +L++P I + A+ I ++ Q S K +L+++L+ Sbjct: 230 LFSATMPPEIRKLSKRYLRDPAEITIKAKKKEAQLIRQHYITV--QNSYKLEVLRRVLE- 286 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K + L SLE +V ++G++ Q R + + ++G I ++VA Sbjct: 287 LNYGEGVIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVA 346 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A ++ + +++ +E Sbjct: 347 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERSYLNNLE 406 Query: 362 KLIEKKVDWL 371 + + + ++ + Sbjct: 407 RAVGQSIERM 416 >gi|319951788|ref|YP_004163055.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM 14237] gi|319420448|gb|ADV47557.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM 14237] Length = 429 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 229/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LG++ ++ A+ GY PTPIQ K+IP++L+ D+ G+AQTGTGKTA+F +P+L Sbjct: 1 MTFKELGIAEPILKALTSEGYENPTPIQEKSIPILLKGKDLLGVAQTGTGKTAAFGIPIL 60 Query: 61 TILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + + + R + L++ PTRELA Q+ ++F Y + + ++ GG+ Q Sbjct: 61 HHIYTNNSGIGKRKIKALVVTPTRELAIQIGESFTAYARFTGIKNTVIFGGVKQGKQTDA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G ++LI TPGR+LD N+G + + ++E +V+DEAD+MLDMGFI ++ I + +P R Sbjct: 121 LRQGVEILIATPGRLLDLMNQGFISLRDLEYVVLDEADQMLDMGFIHDVKKIIAKLPAKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q+L FSATM + ++S+ L +++ + +TAE +E + K LL L Sbjct: 181 QSLFFSATMPKTIVELSQKILGEFEQVTIKPEQATAEKVEQAIY--FVPKGDKVKLLVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++++ K ++F K + L+K G + AIHGN Q +R L++FK+G + + Sbjct: 239 IETKEA-KAVLVFSRTKHGANKIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLTV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI D+ V N+D+PN E Y+HRIGRTGRA G A + +E+ ++ Sbjct: 298 LVATDIAARGIDIDDLSLVVNYDLPNVPETYVHRIGRTGRANASGVALSFCDREERAYLK 357 Query: 359 AIEKLIEKKV 368 I+KLI++ + Sbjct: 358 DIQKLIKQTI 367 >gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797] gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797] Length = 418 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 149/393 (37%), Positives = 234/393 (59%), Gaps = 11/393 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL+ K++ + AGY P+PIQ + IP+ + D G A+TGTGKTA+F LP+L Sbjct: 17 FSQLGLNEKILKDLSKAGYETPSPIQSELIPIAVTGQDCIGQARTGTGKTAAFSLPVLQQ 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ R ++ LIL PTREL+ QVA K + +L++A+L+GG P Q +L++G Sbjct: 77 LDLRRPGMQ---ALILAPTRELSEQVAAEIRKLCTSKSLSIAVLVGGKPVRPQENQLKKG 133 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A + + TPGR++DH NRG L + + +V+DEADRMLD+GF P I+ I P RQTLL Sbjct: 134 AQIAVGTPGRVIDHINRGNLQLGTLGFVVLDEADRMLDIGFRPDIEKILRKCPEKRQTLL 193 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SAT+ +++++ ++QNP I+++ + + I+ ++ +K LL +LL Q Sbjct: 194 LSATLPPPVERLANRYMQNPVMIDLSEDKVSVDAIDQYYITV--DPDRKIKLLSRLL-FQ 250 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + K I+F K+ L K+ V AIHG++ Q R ++L F+EG I+L++A+ Sbjct: 251 ERPKQTIVFTRTKRGADKLDRIFSKKLKEVAAIHGDLPQPKRDRVLKKFREGKIRLLIAT 310 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR--AGRHGKAFTLVAKEDIKHIDAI 360 D+ RG+D+ + H+ NFD+P +++Y+HRIGR GR + + G AFT VA ++ + + I Sbjct: 311 DVMGRGIDVSGISHIINFDIPEFSDDYVHRIGRVGRLSSDQKGAAFTFVAPDEGEQLTNI 370 Query: 361 EKLIEKKVDWLNGD-LSSLNP--PLEKIDIAQH 390 E I V D + P P +KI+ H Sbjct: 371 ENRINHMVKEFRVDEFEAYKPQKPRKKIEKVSH 403 >gi|325684686|gb|EGD26840.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 478 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 146/385 (37%), Positives = 232/385 (60%), Gaps = 18/385 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL+ ++ A+ +G+ + TPIQ +TIPL L DV G AQTGTGKTA+F LP+L Sbjct: 1 MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + + + +++EPTRELA Q + + G++ N V ++ GG Q + L+ Sbjct: 61 QKLDLDKQEQAI-QAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++L+ TPGR+LDH R + ++ ++ +V+DEAD MLDMGFI I++I + QT Sbjct: 120 KVPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALLQQL 238 LLFSATM +Q + E F+ +P+ +++ TA+ I+ FV ++ C L+ Sbjct: 180 LLFSATMPKPIQVLGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLID-- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ D ++F K+ V L L +G++ IHG++ Q RM++L FKEG + + Sbjct: 238 VENPDL---AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HV+N+D+P ++Y+HRI GRAG+ G + T V +I ++ Sbjct: 295 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRI---GRAGKSGMSVTFVTPNEIGYMR 351 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLE 383 IE L +KK +S L PP + Sbjct: 352 TIEDLTKKK-------MSPLRPPTD 369 >gi|253682634|ref|ZP_04863431.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873] gi|253562346|gb|EES91798.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873] Length = 476 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 229/364 (62%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F + LS +++ + GY PT +Q K IP+ L+ D+ +QTG+GKTASF +P Sbjct: 1 MNFKEFNLSNEILKTIKMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK + P+ LIL PTRELA Q+ ++ G+ + + G P Q +L+ Sbjct: 59 -VCEKVLLENKKPQVLILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR DH +G + +++I L+IDEAD+ML+MGFI ++++ +P R T Sbjct: 118 QRVHIVVGTPGRTFDHIEKGNMELSDIRYLIIDEADKMLNMGFIDQVEDVIKRLPKDRVT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ ++++K+ ++ NP++IE++ + T + IE + + +K +LL +++ Sbjct: 178 MLFSATLEEKIEKLCVKYMNNPEKIEISKKNITTDIIEQEYYE--VESDRKFSLLNKIIY 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + IIFCN K V ++ ++ +GF A+HG ++Q+ R++++ FK G +V Sbjct: 236 TERP-DSCIIFCNTKAEVGSIAIKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ HV N++VP+ E+Y+HRIGRTGRAG GK+ TLV++ + + +I Sbjct: 295 ATDVAARGIDIEEITHVINYEVPSEKESYVHRIGRTGRAGHKGKSITLVSEYENRRFKSI 354 Query: 361 EKLI 364 E+ I Sbjct: 355 EEYI 358 >gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus stomatis DSM 17678] gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus stomatis DSM 17678] Length = 538 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 152/383 (39%), Positives = 235/383 (61%), Gaps = 9/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L +S ++ A+ D GY +P+PIQ + IP +++ HDV G AQTGTGKTASF +P+L Sbjct: 6 FNELQVSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILEN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLER 121 +++ R + ++L PTRELA QV++ K K L + GG P + Q K L+ Sbjct: 66 IDRDN---RKLQAIVLCPTRELAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQIKALKG 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V I TPGR++DH NR L ++ ++++V+DEAD MLDMGF I+ I S VP RQT Sbjct: 123 GVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVPEERQTA 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++++ + ++P I+V + T I+ ++ T + S K +L +LL Sbjct: 183 LFSATMPKAILELTKKYQKDPVHIKVVRKTLTVSNIKQYYIET--RKSNKLEVLTRLLDV 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K ++F N KK L SL+ +G+ ++HG++ Q R ++ F+ GTI ++VA Sbjct: 241 YNP-KLTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI DV V N+++P E Y+HRIGRTGRAGR G AF+ +++ + IE Sbjct: 300 TDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGREGIAFSFAFGREMRKLKDIE 359 Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384 + + K+ + D+ S+N EK Sbjct: 360 RYTKSKI--VKHDIPSVNDVEEK 380 >gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 622 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + +P+ L+L PTRELA QVA+ F Y K V + GG Q L+R Sbjct: 68 VTSQA----VPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L + ++ LV+DEAD ML MGFI I+ I P RQ Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L++ I + +T ++IE FV +Q++K AL++ +L+ Sbjct: 184 LFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQV-SQHNKLEALVR-VLEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 242 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360 Query: 362 KLIEKKV 368 + ++ Sbjct: 361 RATNSRI 367 >gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium vinosum DSM 180] gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM 180] Length = 662 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 149/382 (39%), Positives = 224/382 (58%), Gaps = 18/382 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLSP + AV + GY PT IQ + IP +L D+ G AQTGTGKTA+F LPML+ Sbjct: 11 FDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALPMLSR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ +R P+ L+L PTRELA QVA+ F++Y + V + GG + Q +L+R Sbjct: 71 LDPD---LRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKR 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGR++DH RG L +++I LV+DEAD ML+MGF I I P RQ Sbjct: 128 NPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQVA 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQLL 239 LFSATM +++V++ L +P +++ S T +TIE HC V + K +L +++ Sbjct: 188 LFSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRF----HKLDVLTRIM 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + +IF K L L+ GF+ ++G+++Q R + + K+G + ++ Sbjct: 244 ELE-PFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + HV N+D+P Y+HRIGRTGRAGR G+A LV + + + Sbjct: 303 VATDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKS 362 Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381 IE++I + + S+ PP Sbjct: 363 IERVIRRPI-------PSMEPP 377 >gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-23m63] gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08] gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07] gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08] gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07] Length = 537 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 227/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL +S + A+ + G+ +P+PIQ ++IP +L DV G AQTGTGKTA+F +P+L Sbjct: 6 FEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILET 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ R + ++L PTRELA QV+ K K ++ + + GG P + Q K L+ Sbjct: 66 IDPNN---RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSLKS 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR +DH NR L M+N++++++DEAD MLDMGF I+ I S +P RQT Sbjct: 123 GVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEERQTT 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM + ++++ + ++P+ I+V T + ++ T + S K +L +L+ Sbjct: 183 FFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRS--SNKLEVLCRLVDV 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D K ++FCN K+ L L+ +G+ A+HG++ Q R ++ F+ GTI ++VA Sbjct: 241 YDP-KLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G +FT V ++++ + IE Sbjct: 300 TDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMKDIE 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RYTKSKL 366 >gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043] gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM 43043] Length = 562 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 150/421 (35%), Positives = 237/421 (56%), Gaps = 26/421 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FAD + P+++ A+ + G + P PIQ T+P+ L HD+ G A+TGTGKT F +PML + Sbjct: 17 FADFPVHPEIISALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPMLNS 76 Query: 62 ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 ++ G A R P+ L + PTRELA QV+ + E+ G++ + V + GG +E Q Sbjct: 77 VVAPGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRHRGIRVLTVYGGRAYEPQ 136 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L RG +V++ TPGR++D +G L ++ +++V+DEAD MLD+GF+P ++ + SL P Sbjct: 137 VDALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVVLDEADEMLDLGFLPDVETLMSLTP 196 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAETIEHCFVATYAQYSKK 231 +RQT+LFSATM + ++ ++ P I N + T + +E +A K Sbjct: 197 ASRQTMLFSATMPGAIVTLARRYMTQPTHIRAMGDENENAHTVKAVEQFVYRAHAL--DK 254 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 +L ++LQ++D IIF K+ + L ++GF+ AIHG++ Q +R + L F Sbjct: 255 VEMLSRMLQAKDRGLT-IIFSRTKRTAAKVADELGERGFAAAAIHGDLGQGAREQALRAF 313 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++VA+D+AARG+D+ +V HV NF P + Y+HRIGRT RAG G A T V Sbjct: 314 RNGKVDVLVATDVAARGIDVDNVTHVINFQCPEDEKTYLHRIGRTARAGNTGVAVTFVDW 373 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 +D+ LI K +D L P + + H + IP ++ GF RR + Sbjct: 374 DDLHRW----ALINKTLD--------LGIPEPQETYSNSEHLYGDLGIPAEAKGFLRRSE 421 Query: 412 N 412 Sbjct: 422 Q 422 >gi|291277508|ref|YP_003517280.1| DEAD box helicase family protein [Helicobacter mustelae 12198] gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198] Length = 513 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 226/371 (60%), Gaps = 14/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS V+ VLDAG+ PTPIQ + IP +LQ DV AQTGTGKTA+F LP+L + Sbjct: 19 FENLGLSKTVLKGVLDAGFRMPTPIQEQAIPAILQERDVIAQAQTGTGKTAAFTLPILEM 78 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L ++ LI+ PTREL QV+D K G+ N+ + GG + Q + L + Sbjct: 79 LHHNQS----IEALIITPTRELTMQVSDEIYKLGRPKNIKTVCVYGGQSIKRQCELLAKN 134 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH G+L +V+DE+D MLDMGF+ I+ I + +P Q LL Sbjct: 135 PQIMVATPGRLLDHLKSGRLDNFTPRFVVLDESDEMLDMGFLDDIEEIFNYLPNNIQVLL 194 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE----HCFVATYAQYSKKCALLQQL 238 FSATM + ++K+++ L NP I++ TP++ ++ +C + ++ L ++ Sbjct: 195 FSATMPEAIKKLAQRILHNPIHIKI-TPTANMTNLDVTQYYCVIGE----GERQEALMRI 249 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +++ K+ IIF KK L + LE +G+ +HG+++QR R + +FK+ ++ Sbjct: 250 LDTENIYKS-IIFTRTKKEADGLYNFLEARGYKAGTLHGDMEQRDRRAAILDFKKCHYKI 308 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGLDI DV HVFN+ +P +E Y+HRIGRTGRAG+ GKA T V + K + Sbjct: 309 LVATDVASRGLDISDVSHVFNYHIPTNSEVYVHRIGRTGRAGKKGKAITFVTPLEFKDLK 368 Query: 359 AIEKLIEKKVD 369 I++ + K++ Sbjct: 369 KIQEDVGSKLE 379 >gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis 961-5945] gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis G2136] Length = 462 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQK 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630] gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-66c26] gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP 107932] gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-63q42] gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC 43255] gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-76w55] gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-97b34] gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-37x79] gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196] gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291] gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-32g58] gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile] gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196] gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291] Length = 537 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 227/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL +S + A+ + G+ +P+PIQ ++IP +L DV G AQTGTGKTA+F +P+L Sbjct: 6 FEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILET 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ R + ++L PTRELA QV+ K K ++ + + GG P + Q K L+ Sbjct: 66 IDPNN---RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSLKS 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR +DH NR L M+N++++++DEAD MLDMGF I+ I S +P RQT Sbjct: 123 GVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEERQTT 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM + ++++ + ++P+ I+V T + ++ T + S K +L +L+ Sbjct: 183 FFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRS--SNKLEVLCRLVDV 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D K ++FCN K+ L L+ +G+ A+HG++ Q R ++ F+ GTI ++VA Sbjct: 241 YDP-KLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G +FT V ++++ + IE Sbjct: 300 TDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMKDIE 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RYTKSKL 366 >gi|115437436|ref|NP_001043295.1| Os01g0549400 [Oryza sativa Japonica Group] gi|143455968|sp|Q5JKF2|RH40_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gi|57899403|dbj|BAD88050.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group] gi|113532826|dbj|BAF05209.1| Os01g0549400 [Oryza sativa Japonica Group] gi|125570769|gb|EAZ12284.1| hypothetical protein OsJ_02174 [Oryza sativa Japonica Group] Length = 792 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 227/380 (59%), Gaps = 8/380 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G P+++ + AG+ PTPIQ ++ P+ LQ DV IA+TG+GKT ++LP Sbjct: 152 FETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMH 211 Query: 63 LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ + R P L+L PTRELA Q+ + K+G++ ++ L GG P Q + L+R Sbjct: 212 IKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDR 271 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR+ D ++ + + LV+DEADRMLDMGF P I+ I +P RQTL Sbjct: 272 GVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTL 331 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQL 238 +++AT E+++++E+ L +P ++ + S E + + + + S+K L+Q+ Sbjct: 332 MYTATWPKEVRRIAEDLLVHPVQVTIG---SVDELVANSAITQNVELITPSEKLRRLEQI 388 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+SQD+ +IFC K+ L +L +Q F AIHG+ Q R K+LS+F+ G + Sbjct: 389 LRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPI 447 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T +D K+ Sbjct: 448 LVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAA 507 Query: 359 AIEKLIEKKVDWLNGDLSSL 378 + K++E + DL+ + Sbjct: 508 DLIKILEGANQRVPRDLADM 527 >gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp. PCC 8801] gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802] gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801] gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802] Length = 485 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 216/369 (58%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LGLS + G+ PT IQ K IPL+L+ HD+ G +QTGTGKTA++ LP+L Sbjct: 3 ISFQSLGLSETRANQLEAIGFTSPTEIQQKAIPLLLEGHDILGQSQTGTGKTAAYSLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ V+ LIL PTRELA QVA + + L + + GG E Q + LE Sbjct: 63 EQVDVKNPNVQ---ALILTPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLE 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D +R KL + V+DEAD ML MGFI ++ I P TR T Sbjct: 120 RGVQIVVGTPGRVIDLLDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKILKQTPDTRST 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM E++++ FL++P + V P + IE +SK AL Q + Sbjct: 180 ACFSATMPREIRELVNQFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKAL--QPIL 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ IIF K+ L L++ G SV HGN+ Q R +++ F+EG I+L+V Sbjct: 238 ELEAPESAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ ++ HV N+D+P+ AE YIHRIGRTGRAG+ G A +LV D + I I Sbjct: 298 ATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQI 357 Query: 361 EKLIEKKVD 369 E+ + ++++ Sbjct: 358 ERKLRQQLE 366 >gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 622 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + +P+ L+L PTRELA QVA+ F Y K V + GG Q L+R Sbjct: 68 VTSQA----VPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L + ++ LV+DEAD ML MGFI I+ I P RQ Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L++ I + +T ++IE FV +Q++K AL++ +L+ Sbjct: 184 LFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQV-SQHNKLEALVR-VLEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 242 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360 Query: 362 KLIEKKV 368 + ++ Sbjct: 361 RATNSRI 367 >gi|49475813|ref|YP_033854.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1] gi|49238621|emb|CAF27864.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1] Length = 460 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 154/366 (42%), Positives = 225/366 (61%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LGLS +V + AG KP PIQ + IP++L+ HD+ GIAQTG+GKT +F LP+L+ Sbjct: 9 FTKLGLSALLVKNLTIAGMSKPKPIQEQAIPMMLKGHDILGIAQTGSGKTLAFSLPILSQ 68 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G R + R LIL PTRELA Q+ + K +L+ L+ GG+ Q K++E Sbjct: 69 ILALGDKRFPKTARALILAPTRELAVQIDETIRAVAKGTHLSTCLIFGGVSRLKQIKRME 128 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+LI TPGR+ D + ++ L++DEADRMLDMGFI I++I L+ RQT Sbjct: 129 AGVDILIATPGRLRDLIREKYVDLSQSRFLILDEADRMLDMGFIHDIRHIVKLLHQVRQT 188 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++ L +P +IEV+ +TA I +K +L +LL Sbjct: 189 ALFSATMPKEITTLAKCLLNDPVKIEVSPQGTTAAEIAQKLYCV--PTCEKKNVLGKLLT 246 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + + I+F K + +L +G+SV IHGN Q +R L F+E +++++V Sbjct: 247 NPDFV-SVIVFTRTKYCADAVTRNLASRGYSVATIHGNKSQSARQSALKAFRERSVRILV 305 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH--ID 358 A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G G+A TL E ++ + Sbjct: 306 ATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLF-DEGVEQMRLR 364 Query: 359 AIEKLI 364 A+E+LI Sbjct: 365 AVERLI 370 >gi|326202741|ref|ZP_08192609.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] gi|325987325|gb|EGD48153.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] Length = 414 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 225/371 (60%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58 M F +L L + A++ GY PT IQ +TIPL+L+ D+ G AQTGTGKTA+F +P Sbjct: 1 MLFDELNLISPIQKALMAEGYTAPTDIQKQTIPLLLEGKDLVGCAQTGTGKTAAFAIPIL 60 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 ML++ ++ +R + LIL PTRELA Q+ ++F YG+ L +++ GG+ + Q Sbjct: 61 QMLSVEQRDSKELRRIKALILTPTRELAVQIGESFTVYGQYLGLKNSVIFGGVSQKPQTD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE G D+LI TPGR+LD N+ + +++I+ V+DEADRMLDMG + ++ I S +P Sbjct: 121 ALEEGVDILIATPGRLLDLINQKYINLHHIKFFVLDEADRMLDMGLVADVKRIISHLPKI 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSATM ++ K+ ++ L +P ++ V SST + IE A Y K LL Sbjct: 181 RQTMLFSATMPPDVSKLIDSILTDPVKVAVTPISSTVDIIEQ---AVYFVGKKDKKLLLT 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++ + ++F K + L K AIHGN Q +R + L+NFK+ + Sbjct: 238 QLLKNKSITSALVFSRTKHGADKIVKELAKVRIHAEAIHGNKSQGARQRALNNFKDKKTR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ + +V N+D+PN E Y+HRIGRTGRAG G A + ++ ++ Sbjct: 298 VLVATDIAARGIDVEGLSYVINYDLPNIPETYVHRIGRTGRAGLGGVALSFCDADEKPYL 357 Query: 358 DAIEKLIEKKV 368 IEKLI K + Sbjct: 358 KDIEKLISKSI 368 >gi|119775874|ref|YP_928614.1| ATP-dependent RNA helicase SrmB [Shewanella amazonensis SB2B] gi|119768374|gb|ABM00945.1| superfamily II DNA and RNA helicase-like protein [Shewanella amazonensis SB2B] Length = 613 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 218/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P+++ ++ G+ PT IQ TIPL +++ D+ A TGTGKTASF+LP L Sbjct: 1 MLFEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R PR L+L PTRELA+Q+ N L + L+ GG+P+ Q + L Sbjct: 61 QHLIDFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEML 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+L++ ++G +E+LVIDEADRMLDMGF ++ I +Q Sbjct: 121 KSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ + + L P +E P S I H ++ K ALL L Sbjct: 181 AMLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKI-HQWIHLADDKDHKFALLTHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q+ +K I+FC + V +L L++ G + + G++DQ+ R + L F +G + + Sbjct: 240 LK-QEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV NFD+P A+ Y+HRIGRTGRAG G A +LV D++ + Sbjct: 299 LLATDVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILG 358 Query: 359 AIEKLIEK 366 +E+ IE+ Sbjct: 359 KVERYIEQ 366 >gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus proteolyticus MRP] gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus MRP] Length = 612 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 143/365 (39%), Positives = 218/365 (59%), Gaps = 9/365 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +L ++P + + + G + +PIQ +++P LQ D+ G A+TGTGKT +F LP++ Sbjct: 1 MNFNEL-IAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPII 59 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE R R R+PR +++ PTRELA QVA FE+ G+ LTV + GG + Q L Sbjct: 60 QGLEPSRERSRLPRAIVVAPTRELARQVAAEFEQTGRE--LTVLTVYGGAAYGPQETALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR++DH RG L + ++ V+DEAD ML +GF I+ I P RQT Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPEGRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LLFSAT+T E++++S +L +P +++ S A+T+EH V + +L L Sbjct: 178 LLFSATLTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRV---GRSRTRVLADL 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + K I+F K+ L L +GF A+HG++ Q R + L +F+ G + Sbjct: 235 LTVYNPEK-AIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTSI 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP+V V + +P E+Y+HR GRTGRAGR G A + + + I+ Sbjct: 294 LVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDREQRDIN 353 Query: 359 AIEKL 363 +E++ Sbjct: 354 GLERV 358 >gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10] gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum H10] Length = 565 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 143/363 (39%), Positives = 230/363 (63%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL LS +V A++D G+ + TPIQ ++IP +L+ +D+ G AQTGTGKT +F +P + Sbjct: 4 LSFKDLTLSDEVQRAIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAV 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 EK ++ + L+L PTRELA Q + K + + + + GG P + Q L Sbjct: 64 ---EKIDPQIDSIQVLVLSPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++ ++I TPGR++DH R + + +++++V+DEAD ML+MGF I I VP RQ Sbjct: 121 KKRPQIIIGTPGRVMDHMRRRTIKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM E+ ++++ + +NP I++ T +IE ++ + S K +L +L+ Sbjct: 181 TILFSATMPKEILELTKKYQKNPVHIKIAHKELTVPSIEQYYLE--VKESAKLEVLSRLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D +K ++FCN KK V L SL+ +GFS A+HG++ Q R K+++ F++G ++ Sbjct: 239 DTND-IKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNFDIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ DV VFN+D+PN E Y+HRIGRTGRAGR GKAFT + ++ + Sbjct: 298 IATDVAARGIDVDDVEAVFNYDLPNDDEYYVHRIGRTGRAGRTGKAFTFIYGREMYKLRD 357 Query: 360 IEK 362 I++ Sbjct: 358 IQR 360 >gi|257790993|ref|YP_003181599.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta DSM 2243] gi|325830863|ref|ZP_08164247.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1] gi|257474890|gb|ACV55210.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243] gi|325487270|gb|EGC89713.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1] Length = 506 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 220/366 (60%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS + + AV GY PTP+Q + IPL L+ D+ A+TGTGKTA+F LP L Sbjct: 4 FNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLDR 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + P L++ PTRELA Q+ + + + + ++GG+ + Q KL+ G Sbjct: 64 LGHAKGG-QGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKHG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+LI TPGR++D +G + + ++E+LV+DEADRMLDMGF P ++ I P +RQTLL Sbjct: 123 VDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQTLL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++ L +P +E+ TA+T+E V + + K ALL+ +L + Sbjct: 183 FSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIV--HVAQTLKPALLKAVLAEK 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F + + C L++ G++ AIH + Q R + L NF G ++VA+ Sbjct: 241 GSDRV-IVFARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+ ARG+D+ +V +V N+D+P + E+Y+HRIGRTGRAG G A + V+ E + IEK Sbjct: 300 DVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRDIEK 359 Query: 363 LIEKKV 368 LI++ + Sbjct: 360 LIKRPI 365 >gi|95928576|ref|ZP_01311323.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] gi|95135366|gb|EAT17018.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] Length = 587 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 231/372 (62%), Gaps = 7/372 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LG++ ++ A+ D GY +P+PIQ ++IP++ + H++ G AQTGTGKTA+F LP+L Sbjct: 5 DFSALGIASPLLQALTDLGYQQPSPIQEQSIPILNEGHNLLGTAQTGTGKTAAFGLPLLG 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + P+ L+L PTRELA QV++ + + K + V + GG P Q K L Sbjct: 65 KIDPSK---KYPQMLVLAPTRELAIQVSEALQSFAKYLPKVKVLAVYGGQPMYQQLKALH 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G V++ TPGRI+DH R L + I +V+DEAD ML MGFI ++ I P Q Sbjct: 122 DGVQVVVGTPGRIMDHMERKSLRLEQISAVVLDEADEMLRMGFIEDVETILGATPPRCQC 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +++V+E +L + + +++ + +ST + IE ++ A ++K +L +L++ Sbjct: 182 ALFSATMPPAIRRVAERYLGDAQEVQIASRTSTVDQIEQRYLMLRA--NQKFDVLTRLIE 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +Q+ + I+F K L LE +G++ ++G++ Q+ R + + K G++ +++ Sbjct: 240 AQE-IDGTIVFVRTKTATTELAERLEARGYNAAPLNGDLSQQVRERTIGRLKNGSLDIVI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HVFN+D+P E YIHRIGRTGRAGR G A V ++ + + +I Sbjct: 299 ATDVAARGLDVERISHVFNYDIPFDTEAYIHRIGRTGRAGRTGTAILFVTPQERRLLKSI 358 Query: 361 EKLIEKKVDWLN 372 E+ ++ + ++ Sbjct: 359 ERATKRDIKPID 370 >gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091] gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091] Length = 462 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQK 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|224418675|ref|ZP_03656681.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter canadensis MIT 98-5491] gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT 98-5491] gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491] gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT 98-5491] gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491] Length = 505 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 219/369 (59%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ GL KV+ + +AG+ +P+PIQ + IP++L DV AQTGTGKTA+F LP++ Sbjct: 11 FAEFGLKSKVLKGIDEAGFKEPSPIQKEVIPVILDGLDVIAQAQTGTGKTAAFALPLINE 70 Query: 63 LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G V LI+ PTREL Q+ D K GK + L GG P Q + LE+ Sbjct: 71 LRHDGSIEV-----LIVAPTRELVMQIGDEVFKLGKYNKVRTVSLFGGQPIRRQIELLEK 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR+LDH G+L + ++V+DE+D MLDMGF+ I+ I + + RQTL Sbjct: 126 KPQIVIATPGRLLDHLRNGRLKDFDPRVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++ +++ L NPK I+V +T + I + Q + + +L+ S Sbjct: 186 LFSATMPTPIKHLAQKILHNPKLIKVTPSDTTNQDISQRYYIINEQEREDAIV--RLIDS 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K IIF KK LC L +G+ A+HG+++QR R K + FK+ +I ++VA Sbjct: 244 EMPSK-AIIFTRMKKEADLLCERLVNRGYKAGALHGDMEQRERQKSIKAFKDSSINVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HVFNF +P E+Y+HRIGRTGRAG+ G A TL + K + I+ Sbjct: 303 TDIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIK 362 Query: 362 KLIEKKVDW 370 + + K++ Sbjct: 363 ENTKAKIEL 371 >gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5] Length = 473 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 230/378 (60%), Gaps = 5/378 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L ++ AV + GYV PTPIQ + IP L+ D+ G AQTGTGKTA+F LP+L Sbjct: 1 MTFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPIL 60 Query: 61 TILE-KGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + R + R P + L+L PTRELA Q+ + Y + +L ++ GG+ Q Sbjct: 61 QLLSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RG D+L+ TPGR+LD +G + +++I V+DEADRMLDMGFI I+ I L+P R Sbjct: 121 LQRGVDLLVATPGRLLDLIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM ++ ++ + L +P + V P+S ETI + +A+ ++K LL L Sbjct: 181 QTLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVM--FAEKAEKKDLLISL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + + + ++F K + L K G AIHG+ Q +R + +++F+ G ++ Sbjct: 239 LRER-SEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI ++ V N+D+P AE Y+HRIGRTGRAG G A ++++ + Sbjct: 298 LIATDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLK 357 Query: 359 AIEKLIEKKVDWLNGDLS 376 I+KL +D +G L+ Sbjct: 358 DIQKLTGLVLDPDSGRLT 375 >gi|296087640|emb|CBI34896.3| unnamed protein product [Vitis vinifera] Length = 1180 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 143/354 (40%), Positives = 217/354 (61%), Gaps = 8/354 (2%) Query: 16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PR 74 V AG+ PTPIQ ++ P+ LQ D+ IA+TG+GKT +++P L++ R +M P Sbjct: 37 VYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQMGPT 96 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 L+L PTRELA Q+ D K+G++ L+ L GG P Q + L+RGAD+++ TPGR+ Sbjct: 97 VLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATPGRLN 156 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 D ++ + + LV+DEADRMLDMGF P I+ I VP RQTL+++AT E++K+ Sbjct: 157 DILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKI 216 Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCALLQQLLQSQDTMKNGIIF 251 + + L NP ++ + + E + + + Y + Y +K L+Q+L+SQ+ IIF Sbjct: 217 AADLLVNPVQVNI---GNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIF 273 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 C+ KK L +L + F AIHG+ Q R +L+ F+ G ++VA+D+AARGLDI Sbjct: 274 CSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDI 332 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 D+ V N+D P E+Y+HRIGRTGRAG G A+T A++D K+ + K++E Sbjct: 333 KDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLE 386 >gi|325970751|ref|YP_004246942.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy] gi|324025989|gb|ADY12748.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy] Length = 622 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 146/362 (40%), Positives = 217/362 (59%), Gaps = 7/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 FADLGLS + + A+ G+ +PT IQ IPL+L+ DV G AQTGTGKTA+F LP+L Sbjct: 7 FADLGLSAQTIAAIKAKGFEEPTKIQSACIPLLLKDQVDVIGQAQTGTGKTAAFGLPILE 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 I++ +V+ LIL PTRELA Q A+ + L +A + GG E Q +KL R Sbjct: 67 IVDPSLYQVQ---ALILAPTRELAVQNAEEINSLKGDRRLEIAAVYGGASMELQLRKLRR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGRILDH RG L + +++ +V+DEAD MLDMGFI I+ + P ++ L Sbjct: 124 GVHVVVGTPGRILDHLRRGSLHLEHLKFVVLDEADEMLDMGFIEDIEEVLKQTPAEKRML 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM +Q+++E F+ N + +++ + T+ + +V + S K L +++ Sbjct: 184 CFSATMPQPIQRLAERFMHNAQVVKIQQDTMTSNLTDQIYVEV--KESDKLEALTRIIDM 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ GIIFC K + L +G+ +HG++ Q+ R IL +E +I ++VA Sbjct: 242 EENF-YGIIFCRTKVQCDEVGRKLMDRGYDAEPLHGDLSQKQRELILHKMRERSISIIVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI D+ HV NF +P + YIHR+GRTGRAG+ G A T VA + K I+ Sbjct: 301 TDVAARGIDISDLTHVINFSLPEDPDAYIHRVGRTGRAGKTGIAITFVAPREFKRFSFIK 360 Query: 362 KL 363 + Sbjct: 361 NV 362 >gi|301168896|emb|CBW28490.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810] Length = 613 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 230/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E++ K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|257141454|ref|ZP_05589716.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264] Length = 465 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 153/392 (39%), Positives = 226/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A++G+GKTA+F L +L Sbjct: 10 FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLITHAKSGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 70 LDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + L P TRQTL Sbjct: 127 GAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T + LL + + Sbjct: 187 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362 Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387 + + + V+W L D + L PP+E + I Sbjct: 363 QALGRDVEWHPLAELKADGNEPLLPPMETLQI 394 >gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM 18053] Length = 590 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 229/368 (62%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL+ ++ A+ + G+ KP+PIQ + IP VLQ DV G AQTGTGKTA+F +P+L Sbjct: 9 FEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVLER 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ V+ LIL PTRELA QV++ + K + + + GG + Q + L++ Sbjct: 69 IDTSSNAVQ---ALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLKK 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH R L + + ++V+DEAD MLDMGF I++I + +P RQT+ Sbjct: 126 GVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTI 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM+ + +++ FL +P I+V T + IE + Q K ++ +L+ Sbjct: 186 LFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQ--AKVEVMTRLIDM 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +K+ ++FCN K+ V + L+ +G++ IHG++ Q+ R ++S FK G ++VA Sbjct: 244 HH-IKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ + V N+D+P E Y+HRIGRTGRAG GKAF+LVA+++ + +IE Sbjct: 303 TDVAARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIE 362 Query: 362 KLIEKKVD 369 + K++ Sbjct: 363 SYTKVKIE 370 >gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense Az-Fu1] Length = 397 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 228/374 (60%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+S + + ++ D GY KPT IQ K IP VL D+ AQTGTGKTA+F +P I Sbjct: 6 FKDLGISQETLKSLEDLGYSKPTEIQEKAIPAVLSGKDLVAQAQTGTGKTAAFGIP---I 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + + + L+L PTRELA QVA + GKN + V + GG + Q L++G Sbjct: 63 VESVNTKQKKIQALVLVPTRELAIQVAKEIKDLGKNKKVFVLSVYGGKSMKHQIDFLKKG 122 Query: 123 ADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV+I TPGR+ D RG L ++N+++ V+DEADRML+MGFI I++I S +P RQ L Sbjct: 123 NDVVIVGTPGRVKDLLERGFLKLDNVKMFVLDEADRMLEMGFIEDIEDIMSYLPEDRQNL 182 Query: 182 LFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 LFSATM E+ ++++ FL ++ + I+V T E I+ V +++K +L Sbjct: 183 LFSATMPKEILELAQEFLNEDYQTIKVKPDEITVEKIKQIIYRVDPKNKFNKLIEVL--- 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 SQ+ + IIF K L L K+GFSV AIHG+ Q+ R +L NF+ G +++ Sbjct: 240 --SQNQAEKTIIFTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRETVLHNFRTGKLKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V V N+ +P AE+Y+HRIGRTGRAG+ G A ++ + K++ Sbjct: 298 LVATDVAARGLDIKGVELVINYGLPKNAESYVHRIGRTGRAGKEGTAISIPTPSEDKYLQ 357 Query: 359 AIEKLIEKKVDWLN 372 I + + ++ +N Sbjct: 358 QILQKTKANIEVIN 371 >gi|239617313|ref|YP_002940635.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF 19.5.1] gi|239506144|gb|ACR79631.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF 19.5.1] Length = 524 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 148/385 (38%), Positives = 235/385 (61%), Gaps = 14/385 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+++GLS K++ ++ G+V+PTPIQ K IP++L D+ G A TGTGKTA+F +P+L Sbjct: 3 MNFSEMGLSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 +L+ +V+ LIL PTRELA QVA N + V + GG E Q L Sbjct: 63 EMLDYSSKKVQ---ALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTL 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G V++ TPGRI+DH R L +++ + +V+DEAD ML+MGF+ I+ I S V RQ Sbjct: 120 KKGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +FSATM + +++ F + P+ I+V T T+E ++ S+K L +L+ Sbjct: 180 ITMFSATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEI--GESRKFDALSKLI 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + ++FCN KK V L L+ +G+ V +HG++ Q R +++++F+ +I+++ Sbjct: 238 EYYNP-QLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ D+ VFN+D+P E Y+HRIGRTGRAG+ GKAF+ + + Sbjct: 297 VATDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLRE 356 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384 I++ + K+ SLN P EK Sbjct: 357 IQRYTKIKI-------KSLNVPSEK 374 >gi|167584515|ref|ZP_02376903.1| ATP-dependent RNA helicase DbpA [Burkholderia ubonensis Bu] Length = 464 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 152/392 (38%), Positives = 225/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 9 FSTLPLTPATLANLAQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LDARRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGTLALDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T + LL + Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLAERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 246 VST----IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + IE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGCIE 361 Query: 362 KLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387 + ++++V+W L D S L PP+E + I Sbjct: 362 QALKREVEWHPLAELKADASEPLLPPMETLQI 393 >gi|218887215|ref|YP_002436536.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758169|gb|ACL09068.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 531 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 225/371 (60%), Gaps = 11/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L LS +++ A+ + G+ + +PIQ IP +L+ DV G AQTGTGKTA+F +P+L Sbjct: 4 LRFEELSLSKEILKAIEEMGFEETSPIQALAIPHILEGRDVIGQAQTGTGKTAAFGIPLL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKL 119 E+ R + + +IL PTRELA QVA+ + + L V + GG P + Q K L Sbjct: 64 ---ERIDPREKDIQGIILCPTRELAIQVAEELTQLASRKRGLYVLPVYGGQPIDRQFKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA V++ TPGR++DH RG + ++ + + V+DEAD MLDMGF I++I VP Q Sbjct: 121 RRGAQVVVGTPGRVMDHMERGTINLSTVRMAVLDEADEMLDMGFRDDIEHILGQVPGEAQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237 T+ FSATM + +++ FL+ P+ ++V T +IE + V + + C +L Sbjct: 181 TVFFSATMPPAILDMAQRFLKTPEFLKVTQKQVTVPSIEQIYYEVRPFQKLEALCRVLDL 240 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 K I+FC+ K+ V L L+ +G+ +HGN++Q R ++++ F+ I+ Sbjct: 241 Y-----NPKRAIVFCSTKRGVDELTQHLQGRGYQADGLHGNLNQSQRDRVMARFRSNGIE 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ DV V N+D+PN E+Y+HRIGRTGRAGR G+AFT V+ D + Sbjct: 296 ILVATDVAARGIDVDDVEAVVNYDIPNAVEHYVHRIGRTGRAGRSGRAFTFVSGRDFYKL 355 Query: 358 DAIEKLIEKKV 368 I+K + + Sbjct: 356 RDIKKFTKAHI 366 >gi|87121447|ref|ZP_01077336.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas sp. MED121] gi|86163290|gb|EAQ64566.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas sp. MED121] Length = 418 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 163/420 (38%), Positives = 242/420 (57%), Gaps = 16/420 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ V GY PTPIQ++ IP VL DV AQTGTGKTA+F LP+L Sbjct: 1 MSFTSLGLHSFLLEQVELLGYQTPTPIQLEAIPAVLANKDVMAGAQTGTGKTAAFALPLL 60 Query: 61 TILEKGRARVRMPR------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L + ++ P L+L PTRELA QV +F YG+ L + GG Sbjct: 61 HRLFEAH-QIENPEPNNQVSVLVLTPTRELAQQVYKSFCDYGQALPLRSVVAYGGASINP 119 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q ++ +G DVL+ TPGR+L+ + + ++ ++ LV+DEADRMLDMGFI IQ I + Sbjct: 120 QIDEIRQGVDVLVATPGRLLELVMKDLVDVSQLKTLVLDEADRMLDMGFIIDIQRILKRL 179 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P +QTL FSAT D + K+S+ LQ+P IEV+ +++AE +E F A + KK L Sbjct: 180 PQQKQTLFFSATFDDAIFKLSKTLLQDPVLIEVDQRNTSAEQVEQIFYAVDKE--KKSGL 237 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L+ S++ + +IF K+ L ++K G AIHG+ Q +R ++L+ FK G Sbjct: 238 ISYLIGSKN-WQQVLIFTRTKEGADRLAKEMKKDGIETQAIHGDKSQGARDRVLAAFKAG 296 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++ +VA+D+AARGLDI + +V N ++P AE+YIHRIGRTGRAG+ G A +L+++++ Sbjct: 297 ELRALVATDVAARGLDIEALSYVINHELPYNAEDYIHRIGRTGRAGQSGLAVSLLSEKEN 356 Query: 355 KHIDAIEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 + IEKL++ + W G P L+K + + N ++ G + KN Sbjct: 357 YLLKDIEKLLDTPLASQWYPG----FEPDLDKPESKSNKRPLSNKEKRNQALGIKPKAKN 412 >gi|77362320|ref|YP_341894.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125] gi|76877231|emb|CAI89448.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein family [Pseudoalteromonas haloplanktis TAC125] Length = 433 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 147/376 (39%), Positives = 224/376 (59%), Gaps = 6/376 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +P++V A+ + Y TPIQ IP V + DV AQTGTGKTA+F LP++ Sbjct: 1 MNFKSFSFAPELVQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + E + P L+L PTRELA Q+A+NF+ + K+ +L V L GG+ Q L Sbjct: 61 QKLFESEVSTTNAPHALVLAPTRELAEQIANNFKDFAKHTSLKVVSLFGGVNTAGQANAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D+++ TPGR+LDH G L + +++ LV+DEADRMLDMGFI +Q + RQ Sbjct: 121 KEGVDIVVATPGRLLDHIRLGNLSLASVKHLVLDEADRMLDMGFIEEMQGVIKSCADDRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +++ + L+ P+ + V+ +STA T+ H V + +K LL +L+ Sbjct: 181 ILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVAH--VVYPVEERRKQELLSELI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F N K+ L L G HG+ Q +R + L FKEG ++++ Sbjct: 239 GKKN-WQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+++AARG+DI + V N D+P AE+Y+HRIGRTGRAG+ G+A + V++E+ + Sbjct: 298 VATEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGKEGQAISFVSREEENMLFE 357 Query: 360 IEKLIEKKVD--WLNG 373 IE LI +K+ +L G Sbjct: 358 IETLIGQKIKRVYLEG 373 >gi|33602957|ref|NP_890517.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] gi|33568588|emb|CAE34346.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] Length = 423 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 230/386 (59%), Gaps = 16/386 (4%) Query: 41 VCGIAQTGTGKTASFVLPMLTIL----EKGRARVRMP-RTLILEPTRELAAQVADNFEKY 95 + G AQTGTGKTA+F LP+L L + R P R LIL PTRELA QV ++ ++Y Sbjct: 1 MMGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRELADQVYESVKRY 60 Query: 96 GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155 + L A++ GG+ Q + L RG +VL+ TPGR+LDH + + ++ + ILV+DEA Sbjct: 61 SLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEA 120 Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215 DRMLDMGF+P ++ I L+P RQ LLFSAT ++E++K+ ++L +P IEV ++TA+ Sbjct: 121 DRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATAD 180 Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275 T+ +A K A + L++S+ +K I+F N K L LE+ G +I Sbjct: 181 TVTQ--IAYQMHGDTKRAAVVHLVKSRG-LKQVIVFSNTKIGTARLARQLERDGVKAESI 237 Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335 HG+ Q RMK L FK G ++++VA+D+AARGLD+ V V N+D+P AE+Y+HRIGR Sbjct: 238 HGDKTQGDRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGR 297 Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 TGRAG G+A L ++ +++ IEKLI+++V +L + D+ +H R Sbjct: 298 TGRAGASGEAIALFTADEERYLLDIEKLIKRQVPRGKLELPA--------DLVARSHGRD 349 Query: 396 NNPIPQKSTGFDRRKKNYSSQKSHIP 421 + ++ G DR + + + P Sbjct: 350 RDAPRERERGADRHRGERRTSGAAAP 375 >gi|317488296|ref|ZP_07946860.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA] gi|316912603|gb|EFV34148.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA] Length = 516 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 220/366 (60%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS + + AV GY PTP+Q + IPL L+ D+ A+TGTGKTA+F LP L Sbjct: 14 FNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLDR 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + P L++ PTRELA Q+ + + + + ++GG+ + Q KL+ G Sbjct: 74 LGHAKG-GQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKHG 132 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+LI TPGR++D +G + + ++E+LV+DEADRMLDMGF P ++ I P +RQTLL Sbjct: 133 VDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQTLL 192 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++ L +P +E+ TA+T+E V + + K ALL+ +L + Sbjct: 193 FSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIV--HVAQTLKPALLKAVLAEK 250 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+F + + C L++ G++ AIH + Q R + L NF G ++VA+ Sbjct: 251 GSDRV-IVFARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVLVAT 309 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+ ARG+D+ +V +V N+D+P + E+Y+HRIGRTGRAG G A + V+ E + IEK Sbjct: 310 DVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRDIEK 369 Query: 363 LIEKKV 368 LI++ + Sbjct: 370 LIKRPI 375 >gi|167042639|gb|ABZ07361.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote HF4000_ANIW133K13] Length = 430 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 159/437 (36%), Positives = 252/437 (57%), Gaps = 24/437 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LGL K++ + DAG+ KP PIQ + IP++L +DV G A TGTGKTA+F LPM+ Sbjct: 3 NFEKLGLEKKILDVLRDAGFTKPFPIQERAIPVLLDGNDVIGQAHTGTGKTAAFALPMIQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ K + + +I+ PTRELA Q+ +++ KN +T A + GG Q L + Sbjct: 63 LVVKNQG----IQGIIMAPTRELALQITSEIKRFAKNTGITTATIYGGQSMGIQLDALRK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++++ TPGR++DH RG + +NN++ +V+DEAD MLDMGFI I+ I L P R T Sbjct: 119 KPEIIVATPGRLIDHLKRGTIKLNNVKHVVLDEADIMLDMGFIEDIEFILDLTPEERTTS 178 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 L+SATM E+ +++E +++PKRI V++ + I+ F+ + +K L + Sbjct: 179 LWSATMPPEIIRLAETNMKSPKRILVDSDELSCAGIDQSFLIIKDR--EKSKYLLDFIHG 236 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I+FC+ K ++ L K G SV ++ G++ Q R +S F++ ++VA Sbjct: 237 N--IGQCIVFCSTKIRTRDVAKLLYKSGESVVSVEGDMSQHRRESSMSKFRKSNANILVA 294 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DIP V V N+D+PNR Y HRIGRT RAG G+A T+V+ + + I+ Sbjct: 295 TDVAARGIDIPTVALVINYDIPNRDMVYFHRIGRTARAGAKGRAITMVSYSSVGEWNEIK 354 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK--STGFDRRKKNYSSQKSH 419 K + KV +++ LN EK+ I + +P+ ++ + F R KN+SSQ S Sbjct: 355 K--QTKV-----NMTDLN---EKLGI----EVKIPDPLKRRVATRQFSHRIKNHSSQFSR 400 Query: 420 IPLKESEKISKLQQDIQ 436 + K K ++ IQ Sbjct: 401 RQMSARNKYDKRKKKIQ 417 >gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102] gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102] Length = 469 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYIGRKL 369 >gi|238023960|ref|YP_002908192.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1] gi|237878625|gb|ACR30957.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1] Length = 461 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 150/368 (40%), Positives = 216/368 (58%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + + Y +PTP+Q + IP VL DV AQTGTGKTA F LP+L Sbjct: 1 MSFASLGLIEPLLRNLRELNYAEPTPVQARAIPAVLGGKDVLAAAQTGTGKTAGFALPLL 60 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++++G A R L+L PTRELA QV +F YG L + GG+ Q K Sbjct: 61 QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFADYGCGLELRMLAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + + LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGVDVLVATPGRLLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELDAVFAALPTRR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT DE++ ++ L P +I V+ P++TA + V K L L Sbjct: 181 QTLLFSATFPDEIRAMAAKRLHEPVQISVSAPNATASRVRQWVVTV--DKRNKPELFMHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ ++ ++F + V L LE G +V IHG+ Q +R++ L FK G +++ Sbjct: 239 L-AEHGWQHALVFARTRAGVDYLAARLEAAGHAVDTIHGDKPQPARLRALERFKRGEVRM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P A++Y+HRIGRTGRAG G A +LV ++ + Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLA 357 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 358 AIEALIRQ 365 >gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 781 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 221/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G +++ VL AG+ PTPIQ ++ P+ LQ D+ IA+TG+GKT ++LP Sbjct: 165 FEATGFPSEILREVLSAGFSVPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPGFIH 224 Query: 63 LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L++ R ++ P L+L PTRELA Q+ D K+G++ ++ L GG P Q K+L+R Sbjct: 225 LKRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGRSSRISCTCLYGGAPKGPQLKELDR 284 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR+ D ++ ++ + LV+DEADRMLDMGF P I+ I VP RQTL Sbjct: 285 GVDIVVATPGRLNDILEMRRISLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTL 344 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQL 238 +++AT E++K++ + L NP ++ + + E + + + Y + +K L+Q+ Sbjct: 345 MYTATWPREVRKIAADLLVNPVQVNIG---NVDELVANKSITQYIEVLAPMEKHRRLEQI 401 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+SQ+ IIFC+ KK L +L + F AIHG+ Q R +LS F+ G + Sbjct: 402 LRSQEPGSKIIIFCSTKKMCDQLARNLTRT-FGAAAIHGDKSQSERDHVLSQFRTGRSPV 460 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T +D K+ Sbjct: 461 LVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYAS 520 Query: 359 AIEKLIE 365 + K++E Sbjct: 521 DLIKVLE 527 >gi|32474767|ref|NP_867761.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1] gi|32445306|emb|CAD75308.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1] Length = 452 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 149/365 (40%), Positives = 218/365 (59%), Gaps = 5/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LSP + AV DAG+ P+PIQ IP L DV G A+TGTGKTA+F +P+L Sbjct: 46 FDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQ 105 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ R P+ +++ PTRELA QVA E+ + +A+L GG Q ++LE G Sbjct: 106 LDSLED-CRDPQAIVIVPTRELADQVAAEAERLARGVPTEIAVLSGGKNMNRQLRQLENG 164 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+ DH RG L NN+ +V+DEADRMLD+GF P I+ I P RQTLL Sbjct: 165 TQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLL 224 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SAT+ +++++E+++ P I+ +TIE + T AQ K LL+ LL+ + Sbjct: 225 LSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYF-TIAQ-DDKVRLLESLLKRE 282 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIFC K+ L L + S C AIHG++ QR R ++L ++G ++ +VA Sbjct: 283 KP-EQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVA 341 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ RG+DI + H+ NFDVP ++Y+HR+GRTGR GR G A+T V + + +IE Sbjct: 342 TDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILTSIE 401 Query: 362 KLIEK 366 + I K Sbjct: 402 QRINK 406 >gi|134297916|ref|YP_001111412.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum reducens MI-1] gi|134050616|gb|ABO48587.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens MI-1] Length = 460 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 216/368 (58%), Gaps = 6/368 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LG+ ++ + G +PTPIQ +TIP++L DV AQTGTGKT +FVLP Sbjct: 3 DFLQLGIRRELNELLRVYGITEPTPIQKQTIPILLSGKDVIAQAQTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ILEK A+ + LIL PTRELA Q+ +K + V + GG E QNK+L+ Sbjct: 60 ILEKIDAKKSYIQALILTPTRELALQITTEVKKLASKMDANVLAVYGGQDVERQNKRLQG 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR+LDH RG + + + +LV+DEAD+ML MGF+ ++ I RQT+ Sbjct: 120 NTHIVIATPGRLLDHLGRGTIRLTGVSMLVLDEADQMLHMGFLNEVEKIIHQTSAKRQTM 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++ +S +++ P I V T E + V T +K+ L + L + Sbjct: 180 LFSATMPAEIRALSVKYMRKPMDIHVRGTGITLEKTKQIAVET-TDRTKQETLRKLLDEY 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + GIIFC K+ L L G++ +HG++ Q R +++ F+E +Q++VA Sbjct: 239 QPYL--GIIFCRTKRRASALNEMLLAHGYNSDELHGDLSQAKREQVMKRFREAKLQILVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T V+ D + IE Sbjct: 297 TDVAARGLDVEGVTHVFNYDIPQDVESYIHRIGRTGRAGDTGLAVTFVSPRDRTDLQMIE 356 Query: 362 KLIEKKVD 369 K I K++ Sbjct: 357 KGIGMKLE 364 >gi|34498296|ref|NP_902511.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] gi|34104150|gb|AAQ60509.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] Length = 420 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 147/365 (40%), Positives = 218/365 (59%), Gaps = 6/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL P +V + L+ YV+PT IQ IP +LQ DV AQTG+GKTA+F LP+L Sbjct: 1 MPFASLGLQPDLVQSALEQDYVRPTAIQSAAIPAILQGGDVLATAQTGSGKTAAFCLPLL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117 L+ RA +R PR LIL PTRELAAQV D ++ L VA++ GG+ Q Sbjct: 61 QQWLDSPRAILRQPRALILLPTRELAAQVGDILRDLAQSLPRKLKVAVVYGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GAD+++ TPGR+LD + L ++ ++ LV+DEADR+LD+GF + ++ +P Sbjct: 121 ALRGGADIVVATPGRLLDLLDHNALRLSAVKTLVLDEADRLLDLGFADELGSVLDRLPPA 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT ++ ++E L+ P RI++ ++TA I + A K+ LL+ Sbjct: 181 RQNLLFSATFPPAVRALAEKLLKQPLRIDIEHAAATAPDIRQRAIEVDA--GKRTLLLRH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++D K ++F ++ + L + G A+HG+ Q R + L++ K G ++ Sbjct: 239 LLATRDWDK-ALVFVASRQAADRVADKLRRNGVPAAALHGDCSQGQRGQALADLKSGRLR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + V N+D+P +Y HRIGRTGRAG G+A + V+ + H Sbjct: 298 VLVATDVAARGIDIARLPLVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFVSADCAAHF 357 Query: 358 DAIEK 362 IEK Sbjct: 358 RLIEK 362 >gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402] gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 498 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 147/389 (37%), Positives = 228/389 (58%), Gaps = 33/389 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+S + A+ G+ +PTPIQ+ +IP + DV G AQTGTGKT +F +P++ Sbjct: 4 FRDLGISEPTINALEKLGFTEPTPIQMDSIPHTMAGRDVLGQAQTGTGKTGAFGIPLIEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + KGR ++ +LIL PTRELA QVA+ + + + + V + GG+P + Q ++L++ Sbjct: 64 V-KGREGIQ---SLILAPTRELAVQVAEQLKAFSRGQGIQVTTVFGGMPIDRQIRELKKK 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTL 181 +++ TPGR++DH NR L +I L++DEAD M++MGFI ++ I +P RQT+ Sbjct: 120 PQIVVGTPGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKENRQTM 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +Q++ + F++NP ++ T + + +IE + + + L+ Sbjct: 180 LFSATMPKAIQELVQKFMKNPVIVKTMTNNDSDPSIEEFYT------------IVKELEK 227 Query: 242 QDTMKN---------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 DT N I+F K+ V L +L +G+ +HG+I Q R+++L FK Sbjct: 228 FDTFTNFLDVHRPELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFK 287 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 I ++VA+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+HG A + V Sbjct: 288 NDQIDILVATDVAARGLDISGVTHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPV 347 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 ++ +I IEK N + +L PP Sbjct: 348 EMDYIRQIEK-------AKNRQMQALRPP 369 >gi|118579798|ref|YP_901048.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502508|gb|ABK98990.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM 2379] Length = 475 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 152/381 (39%), Positives = 224/381 (58%), Gaps = 9/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L + + DAG+V TPIQ +T+P+ L DV G AQTGTGKTA+F++ + Sbjct: 1 MKFSELPLPEPLQNGLADAGFVDCTPIQERTLPISLSGKDVAGQAQTGTGKTAAFLVTLF 60 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 T L K PR LIL PTREL Q+ + + G+ LT+ + GG+ + Q Sbjct: 61 TRLLKDSPPEGTHHPRALILAPTRELVVQIEQDAQLLGRQCGLTIQAIYGGVDYMKQRDA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPF- 176 L GADV+I TPGR++D+ + + IE+LVIDEADRM DMGFI ++ I L PF Sbjct: 121 LREGADVIIGTPGRLIDYLKQKVYSLKQIEMLVIDEADRMFDMGFIADLRFILRRLPPFD 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ L+FSAT+ + +++ F+ P+++ V TAE +E Y K+ L Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNMPEKVSVTPEKMTAENVEQVI---YHASRKEKFPLL 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L +D M+ +IF N K+ L L GF I G++DQ+ R++IL FK G + Sbjct: 238 LGLLRRDGMERTMIFINTKREGEYLHDRLNANGFPCRLISGDVDQKKRLRILEQFKSGEL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++A+D+A+RGL I V HV N+D+P E+Y+HRIGRT RAG GKA +L ++ + Sbjct: 298 PILIATDVASRGLHIDGVTHVVNYDLPQDCEDYVHRIGRTARAGAQGKAISLADEDGALY 357 Query: 357 IDAIEKLIEKKV--DWLNGDL 375 ++AIE+ I+ K+ +W +L Sbjct: 358 LEAIEEYIKAKIPCEWAEDEL 378 >gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640] gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06] Length = 462 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila simulans] gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila ananassae] gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp. wRi] gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila ananassae] gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila simulans] gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp. wRi] Length = 402 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 148/339 (43%), Positives = 209/339 (61%), Gaps = 16/339 (4%) Query: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRT---LILEP 80 PTPIQI+ IPL LQ D+ G AQTGTGKT +F +P++ L + P T L++ P Sbjct: 19 PTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKL------LNEPNTGSALVIVP 72 Query: 81 TRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 TRELA QV + K +N L VALLIGG P Q +L++ ++I TPGRI+DH R Sbjct: 73 TRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKPQIVIGTPGRIIDHIER 132 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 L+ N+ +LV+DE DRM DMGF I+ I +P RQTL+FSAT+ ++ K++E +L Sbjct: 133 KTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMFSATLPGDIVKLAEKYL 192 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLLQSQDTMKNGIIFCNQKKNV 258 P+RI V+ +T+ I+ V YA S+K L+ QL Q + ++ IIF K+ Sbjct: 193 NRPERISVDCEVTTSVKIKQEIV--YASESEKYEKLVTQLCQREGSI---IIFVKTKRGA 247 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 L H L K +S AIHG++ Q R +++++F+ G Q+MVA+D+A+RGLDIP + HV Sbjct: 248 DQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHVI 307 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 N+D P +YIHRIGRT RAG G A + V +D + + Sbjct: 308 NYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRL 346 >gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803] gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803] Length = 606 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 225/372 (60%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA G S + + LDA GY +P+PIQ P ++ D+ G AQTGTGKTA+F LP+L Sbjct: 59 FAGFGFS-EALLKTLDAKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLE 117 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ R PR L+L PTRELA QVAD+F+ Y + +L V + GG F +Q L+ Sbjct: 118 RLD---GRSNTPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHALK 174 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR++DH +G L + LV+DEAD ML MGFI ++ I +P RQ Sbjct: 175 RGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQV 234 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +E++++S+ +L+ P I + T A+ I + Q + K L ++L+ Sbjct: 235 VLFSATMPNEIRRLSKRYLREPAEITIKTKDREAKRIRQRSITL--QNAHKIEALNRVLE 292 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + T + IIF K + + SLE G V ++G++ Q R + + ++GT+ ++V Sbjct: 293 AV-TGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILV 351 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A V + + + + Sbjct: 352 ATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNL 411 Query: 361 EKLIEKKVDWLN 372 E+ + + ++ ++ Sbjct: 412 ERAVNQSIEPMD 423 >gi|91228572|ref|ZP_01262491.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01] gi|269964706|ref|ZP_06178944.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|91187851|gb|EAS74164.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01] gi|269830605|gb|EEZ84826.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 459 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 224/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +GL+P ++ + Y TPIQ ++P +L+ DV G +TG+GKTA+F L +L+ Sbjct: 6 FDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH +G++ ++ + LV+DEADRMLDMGF + I P RQTL Sbjct: 123 GAHILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++++++ +Q P+ I+V + T+ +I F ++ AL LL Sbjct: 183 LFSATFPEKIEQIAQRIMQTPEVIKVESTHDTS-SIAQYFYKVEGSEARDEALANLLLTH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V ++ L +GFSV IHG+++QR R + L F ++ ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQSVADELHHKGFSVIDIHGDLEQRERDQALVQFANKSVSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++D + IE Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359 Query: 362 KLIEKKV 368 + +E V Sbjct: 360 EYLEMDV 366 >gi|282890698|ref|ZP_06299218.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499291|gb|EFB41590.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 538 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 147/359 (40%), Positives = 225/359 (62%), Gaps = 12/359 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL+ ++ A+ +A + +P+PIQ K IP++L DV AQTGTGKTA+F LP L Sbjct: 51 FTDFGLNDSLLKAIAEAKFTQPSPIQEKVIPIILNGQDVVAQAQTGTGKTAAFGLPSLNR 110 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+K A V + L++ PTRELA QV+D + GK + + GG + Q +ERG Sbjct: 111 LDKA-AGVGL---LVITPTRELAVQVSDELYRLGKYCGIRTIAVYGGQSIQRQIDGIERG 166 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A V++ TPGR+LD +L + I+V+DEAD ML+MGF+ IQ I + +P RQTLL Sbjct: 167 AQVVVATPGRLLDLLKSRRLSHFSPPIVVLDEADEMLNMGFLEDIQEIFTFLPKERQTLL 226 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQS 241 FSATM +QK+++ FL+ P+ I++ + ++ I+ C+V S++ L +LL + Sbjct: 227 FSATMPLPIQKLAKTFLREPEFIKITKKETASQNIQQICYV---IHESERDDALVRLLDA 283 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q+ K+ IIFC KK+V + L +G+ +HG+++Q R +++ F++ Q++ A Sbjct: 284 QEEAKS-IIFCRTKKDVDRVSSFLTSRGYGARGLHGDMEQPQRQRVIDGFRQNEFQILAA 342 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI---KHI 357 +D+AARGL++ DV HV+N+ +P E+Y+HRIGRTGRAG G A TL+ ++ KHI Sbjct: 343 TDVAARGLNVLDVTHVYNYHLPYETESYVHRIGRTGRAGNKGIAITLLNPREVSGLKHI 401 >gi|224825377|ref|ZP_03698482.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] gi|224602298|gb|EEG08476.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] Length = 460 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 159/393 (40%), Positives = 226/393 (57%), Gaps = 13/393 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ L LSP +V + GY + TPIQ +++P++L R D+ A+TG+GKTA+F L Sbjct: 5 DFSSLPLSPSLVDNLASLGYTRMTPIQAQSLPVILNRQDLIAQAKTGSGKTAAF---GLG 61 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +L+K R + L+L PTRELA QVA + ++ N+ V L GG P Q LE Sbjct: 62 LLDKINPRWFAVQALVLCPTRELADQVAKEIRRLARSVDNIKVVTLCGGTPMGPQIGSLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGR+ DH +R L ++ +E LV+DEADRM+DMGF I I + P RQT Sbjct: 122 HGAHVVVGTPGRLHDHLSRNTLDLSTVETLVLDEADRMVDMGFYEEIVGIVAACPRKRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT D ++K S FL+NP ++V + +H + Q ++ A + LL Sbjct: 182 LLFSATYPDTIRKQSARFLKNPVEVKVESLHDAGHIEQHFY---KIQPERRVATVAALLG 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I FCN K+ V L + L++QGFS A++G ++QR R +IL F + ++V Sbjct: 239 HFRPVST-IAFCNTKQQVRELANELQQQGFSALALYGELEQRERDEILVQFANRSCSVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N D+ + E +IHRIGRTGR G G A +LV D K + I Sbjct: 298 ATDVAARGLDISTLEAVINVDLSHDPEIHIHRIGRTGRGGEKGLALSLVGPNDSKRLALI 357 Query: 361 EKLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388 E + K +W L S L PP+ + IA Sbjct: 358 EDYQQAKPNWADPAELTSSGSPLVPPMVTLCIA 390 >gi|107027331|ref|YP_624842.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054] gi|105896705|gb|ABF79869.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054] Length = 465 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/392 (39%), Positives = 227/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GYV TPIQ ++P+ L D+ A+TG+GKTA+F L +L Sbjct: 9 FSALPLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ AR + +IL PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LD---ARSFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK I++ ++ + + T ++ + QLL Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEIKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNH 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIE 361 Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387 + +++V+W D S L PP+E + I Sbjct: 362 QAQKREVEWHPLAELKPADDSVLLPPMETLQI 393 >gi|331006961|ref|ZP_08330204.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989] gi|330419223|gb|EGG93646.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989] Length = 451 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 148/375 (39%), Positives = 230/375 (61%), Gaps = 12/375 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ A+ D G+ +PIQ +++P L HD+ G AQTGTGKTA+F+ ++ Sbjct: 71 FHDLGLEAPLMHAIADLGFEYCSPIQAQSLPNTLNGHDMLGKAQTGTGKTAAFLTAIIDD 130 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K G R LI+ PTREL Q+A++ + K+ +LTV L+GG+ + Q + Sbjct: 131 LLKNPLEGERYAGEARALIIAPTRELVVQIAEDAKLLVKHTDLTVHTLVGGMDYTKQQQG 190 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 + + D+L+ TPGR+LD + + ++ +EILV+DEADRMLDMGFIP ++ I L P Sbjct: 191 VRNKFVDILVATPGRLLDFASNKDVHLDQVEILVLDEADRMLDMGFIPQVRRIVRLTPRC 250 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCAL 234 RQTL FSAT TD++ +++E + QNP +E+ S +T+E H ++ S+K L Sbjct: 251 ENRQTLFFSATFTDDVMRLAEQWTQNPCSVEIEPESVATDTVEQHVYLVAA---SEKYKL 307 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L + D +++ I+F N++ L L K GFS + G + Q R+K L FK G Sbjct: 308 LTNLARQPD-VESLIVFGNRRDECRRLHEQLVKHGFSAGLLSGEVAQNKRIKTLDGFKSG 366 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+A RG+ I ++ HV NF +P E+Y+HRIGRTGRAG+ G + + ++D Sbjct: 367 KIKILVATDVAGRGIHINNISHVVNFSLPEEPEDYVHRIGRTGRAGKKGVSISFACEDDA 426 Query: 355 KHIDAIEKLIEKKVD 369 + +EKL+ +K++ Sbjct: 427 FLLPELEKLLGQKLE 441 >gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] Length = 404 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 223/371 (60%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L V+ A+ + + TPIQ K IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELNLHDSVLEALDAMNFEESTPIQEKAIPIILENKDLIAVAQTGTGKTAAFLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G+ +I+ PTRELA Q+ E + +++ + GG I FE Q + Sbjct: 61 DKLSEGKHIPDKVNCIIMSPTRELAQQIDQQMEGFSYFLSVSSVAIYGGSDGIAFEQQKR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GA+V+I TPGR+L H G + ++ ++ ++DEADRMLDMGF I I +P Sbjct: 121 GLTMGAEVVIATPGRLLSHLKLGYVDLSEVKHFILDEADRMLDMGFFDDIMQIAQYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM D++QK+++N L NP+ I++ + ++ +V Q K ++ Sbjct: 181 RQTIMFSATMPDKIQKLAQNILHNPEEIKLAVSKPAEKILQAAYVCYEGQ---KLNIIND 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L S+ + ++F + K V + +L+K V IH +++Q++R ++L NFK G I Sbjct: 238 LF-SKSKSEKSLVFASSKAKVKEVARALKKMDLKVGEIHSDLNQKTREEMLQNFKAGNID 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++V +D+ ARG+D+ D+ V N+DVPN +E+Y+HRIGRT RA G A T V +D ++ Sbjct: 297 ILVGTDIIARGIDVDDIRLVINYDVPNDSEDYVHRIGRTARANNDGVAITFVNTKDQQNF 356 Query: 358 DAIEKLIEKKV 368 IE +EK + Sbjct: 357 LEIEDFLEKDI 367 >gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella multipartita DSM 44233] gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM 44233] Length = 586 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 150/416 (36%), Positives = 232/416 (55%), Gaps = 29/416 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA+ G+ ++V A+ D G + IQ T+P+ L D+ G A+TG GKT F +P+L Sbjct: 47 FAEFGVDERIVTALADVGIERTFAIQALTLPIALTGSDLIGQARTGMGKTLGFGVPLLQR 106 Query: 61 -------TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ EKG+ V R PR +++ PTREL QV + GK L V + GG + Sbjct: 107 LSHDKAVTVDEKGKLPVGRAPRAVVMVPTRELCVQVTRDLHALGKALGLAVTAVYGGRAY 166 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q K L+ G D+++ TPGR+LD N G L++ +++LV+DEAD MLD+GF+P ++ + Sbjct: 167 EPQIKALQAGVDLVVGTPGRLLDLANSGHLVLGGVKVLVLDEADEMLDLGFLPDMEKVLD 226 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY---AQYS 229 LVP +QT+LFSATM + ++ F+ P I + AE H + A Sbjct: 227 LVPTVKQTMLFSATMPGPILTLARTFMSRPMHIRAE---AAAEGAMHSTTRQFVYRAHAL 283 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K +L ++LQ++ ++F K+ + LE++GF+ A+HG++ Q +R + L Sbjct: 284 DKVEMLARVLQARGRGLT-MVFTRTKRTAAKVAEDLEERGFAAAAVHGDLGQGAREQALR 342 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 F+ G + ++VA+D+AARG+D+ DV HV NF P + Y+HRIGRTGRAG+ G A + + Sbjct: 343 AFRAGKVDVLVATDVAARGIDVDDVTHVINFQCPEEEKTYVHRIGRTGRAGKTGTAVSFI 402 Query: 350 AKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 +DI I + +E LN N P+E + H A + IP+ +TG Sbjct: 403 DWDDIPRWQLINQALE-----LN-----FNDPVETYSTSPHLFAELD--IPEGTTG 446 >gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6] gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O] gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6] gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O] Length = 641 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ G+V PTPIQ IP +LQ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLELNDAILSALDGMGFVSPTPIQAAAIPHLLQGVDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ + R P+ ++L PTRELA QVA + G+N L V + GG Q + L Sbjct: 66 NKLDLAQ---RKPQAIVLAPTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA V++ TPGR+ D NR +L + + V+DEAD ML+MGF+ + I P + Q Sbjct: 123 KNGAHVIVGTPGRVQDLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM L+ + E FL++P ++V + T + + F +K + +LL Sbjct: 183 RVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVAQQFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRQGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSSME 369 >gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 462 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMRSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM 12042] gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM 12042] Length = 556 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 221/372 (59%), Gaps = 12/372 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LSP++ A+ D GY + T IQ IP+V+ DV G +QTGTGKTA+F +P++ Sbjct: 1 MKFNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKK 118 +LE R R P+ LIL PTRELA QV D K+ K + + GG Q + Sbjct: 61 EMLEVTDRKR---PQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILE 117 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++GAD+++ TPGR+LDH R L + +LV+DEAD ML+MGF I+ + +P R Sbjct: 118 LKKGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQR 177 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET--IEHCFVATYAQYSKKCALLQ 236 QT+LFSATM + +++ + NP + + TP + T IE + + K+ +L Sbjct: 178 QTVLFSATMPKPILEITSQYQTNP--VHIKTPQTQINTPKIEQVYYVCPKEAKKE--ILM 233 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL+ Q+ +IFCN KK V L L +G+ A+HG++ Q R ++ NFK+G I Sbjct: 234 QLISMQNP-HLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKI 292 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+D+ + VFN+D+P +E Y+HRIGRTGRAG+ G A TL+ Sbjct: 293 NILVATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYA 352 Query: 357 IDAIEKLIEKKV 368 + +E+ K+ Sbjct: 353 LRDLERTTRSKL 364 >gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 524 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 227/369 (61%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL ++ A+ G+ +P+ IQ + IP++L+ HDV G AQTGTGKT +F P+L+ Sbjct: 6 FSELGLDENILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGAPVLSR 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + ++ ++IL PTRELA QV D + K + + + GG P + Q L RG Sbjct: 66 IRSSEGKIS---SIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALRRG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR+LD R L + +I+ LV+DEAD ML+MGFI I+ I RQT+L Sbjct: 123 IDIVVGTPGRVLDLIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQTML 182 Query: 183 FSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM +E++++++ ++++ K I + + T T++ + + ++ C +L Sbjct: 183 FSATMPEEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRIL---- 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + IIFC K+NV L L+ +G++ +HG+++Q R+ L FKEG+++ + Sbjct: 239 -DVDEPTSAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGSLEFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ +V HV N+D+P E+Y+HRIGRTGRA R G A+TLV + + Sbjct: 298 IATDVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKH 357 Query: 360 IEKLIEKKV 368 IEK+ + K+ Sbjct: 358 IEKVTKSKI 366 >gi|298529095|ref|ZP_07016498.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510531|gb|EFI34434.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 367 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 220/368 (59%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F D L ++ + GY PT IQ + IP+ LQ DV G+AQTGTGKTA+FV+P L Sbjct: 1 MNFTDFELDHRIQAGIKACGYKNPTAIQEQAIPVGLQGRDVMGLAQTGTGKTAAFVVPAL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +G+ PR L+L PTRELA Q + F G+ L + GG+ Q +K+ Sbjct: 61 QRLLQGKRG--KPRVLVLSPTRELAEQTHEFFTALGRKTGLRCVSVYGGVSRSGQVQKIR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G ++++ PGR+LD + ++ +E L++DE+DRMLDMGF+P I++I ++P RQ Sbjct: 119 SGVEIVVACPGRLLDLARDRAVNLSQVETLILDESDRMLDMGFMPDIRSIMKMLPPKRQN 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++ +++ L +P R++VN + ++I C + K L++ L + Sbjct: 179 MLFSATMPADIRTLADEILDDPARVQVNHERAL-DSISQCLYPV-KRRPKAEMLIELLRE 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD ++F K + L + GF + GN+ Q +R +++ +FK G+ ++V Sbjct: 237 KQDGAT--LVFTRTKHMATRIAKRLSQAGFRARDLQGNMSQNNRQRVMKDFKRGSFNILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RG+D+ +GHV NFD+P+ AE+Y HRIGRTGRA G A T V +D I AI Sbjct: 295 ATDIASRGIDVAGIGHVVNFDMPDTAESYTHRIGRTGRADSCGDASTFVEPKDFGLIRAI 354 Query: 361 EKLIEKKV 368 E+L +K+ Sbjct: 355 ERLQSQKL 362 >gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16] gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16] Length = 458 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 150/367 (40%), Positives = 222/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ + GY + TPIQ + +PLVL DV G +TG+GKTA+F L +L+ Sbjct: 5 FKTLNLRPELTETLDSLGYTEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGLLSN 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ TL+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 65 LNVSRFRVQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ + + LV+DEADRMLDMGF I I P RQTL Sbjct: 122 GAHILVGTPGRILDHMSKGRISLKELNTLVLDEADRMLDMGFEEAIDTIIEAAPSKRQTL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D ++ +SE + P+ ++V + + TIE F + + AL LL Sbjct: 182 LFSATFPDNIESLSEKVMVAPEMVKVES-THQKSTIEQRFFKLNSTEERDDALEALLLTH 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L+ F +I ++VA Sbjct: 241 KP--ESSVVFCNTKKEVQNVTDELSHRGFSVVELHGDMEQREREQALTMFANKSISILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++++ + I+ Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARID 358 Query: 362 KLIEKKV 368 + ++ V Sbjct: 359 EYMDIAV 365 >gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus UPII 345-E] gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus UPII 345-E] Length = 491 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 136/357 (38%), Positives = 220/357 (61%), Gaps = 10/357 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +++ AV D G+ +P+PIQ + IP+ +Q D+ G AQTGTGKTA+F +P+L Sbjct: 5 FKELGLSEEIMKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPILQR 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + P+ ++L PTRELA Q A+ + N+ + GG E Q + L++ Sbjct: 65 IDTSKPG---PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKK 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++++ TPGR++DH R + ++N++I V+DE D M+DMGFI I+ I + P RQTL Sbjct: 122 PNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLF 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQLLQ 240 FSATM +++++ +FL P+ +++ + T + IE ++ ++ C LL +Q Sbjct: 182 FSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLLD--MQ 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + I+F K+ + +L+K+ +S +HG++ Q+ R ++ FKEGTI +V Sbjct: 240 SPEL---AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 A+D+AARGLDI V HV+NFD+P E Y+HR+GRTGRAG+ G A T V ++ + Sbjct: 297 ATDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQL 353 >gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H 168] gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H 168] Length = 527 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 228/369 (61%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L +S +++ AV D G+ + TPIQ K IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 6 FSELNISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 EK R + P+ +IL PTRELA QVA+ ++ K +L + GG + Q K L++ Sbjct: 64 -EKIDTRNKKPQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVYGGQSIKRQIKALKK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH RG L +++I +V+DEAD MLDMGFI I+ I +P RQTL Sbjct: 123 GVQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSAT+ + + +S+ + + + I++ T IE + + S K +L +L+ Sbjct: 183 FFSATIPETILDLSKRYQKKSQFIKIAHEKLTVPGIEQYYYE--VRRSDKLKVLTRLI-- 238 Query: 242 QDTMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D G+ IFCN +K V L L+ +G+ A+HG +Q R +++ F+ G I+++ Sbjct: 239 -DLYSPGLSLIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V VFN+DVP + Y+HRIGRTGRAG+ GKAFT V +DI + Sbjct: 298 VATDVAARGIDVNGVEAVFNYDVPQDTDYYVHRIGRTGRAGKTGKAFTFVVGKDIYKLRD 357 Query: 360 IEKLIEKKV 368 I+K + ++ Sbjct: 358 IQKYTKTRI 366 >gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] Length = 654 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L+ ++ A+ + G+V PTPIQ +IPL+L D G AQTGTGKTA+F LP+L Sbjct: 33 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + P+ +++ PTRELA QVA + G+N L V + GG Q + L+ Sbjct: 93 KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 149 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+ D +R +L ++ + V+DEAD ML MGF+ + I P T Q Sbjct: 150 NGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQR 209 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++++ + FL+NP RI+V + T +E F +K + +LL+ Sbjct: 210 VLFSATMPPIVKEIVDRFLRNPARIDVAGENRTVSKVEQQFWVVKG--VEKDEAMSRLLE 267 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++DT I+F +++ L L +GF A+HG+I Q R + + + K G I ++V Sbjct: 268 TEDT-DASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 326 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + I Sbjct: 327 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI 386 Query: 361 EKLIEKKVD 369 E++ + +++ Sbjct: 387 ERVTKSRME 395 >gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila DC2201] gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila DC2201] Length = 719 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 225/373 (60%), Gaps = 7/373 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ +V+ A+ + GY P+PIQ TIP +L DV G+AQTGTGKTA+F +P L+ Sbjct: 78 FAELGVDGRVLAALDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSK 137 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L + R R L+L PTRELA QVA+ F Y + + TV + GG + Q Sbjct: 138 LAELSDLHGPQRSTRVLVLAPTRELALQVAEAFGSYATHLEDFTVLPVYGGSSYGPQLAG 197 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGA V++ TPGR++DH ++G L +++I +V+DEAD ML MGF ++ I + P + Sbjct: 198 LKRGAQVVVGTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPVEK 257 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM ++++++ +L++P+ I V ++T ++ + K + ++ Sbjct: 258 QVALFSATMPKAIRRIAQQYLRDPQEITVKAKTTTGTNTRQRYMQVMGPH--KLDAMTRV 315 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D I+F K + L+ +G++ AI+G+I Q R + + + +EG I + Sbjct: 316 LEVED-YDGVIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDI 374 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + V N+D+P+ E+Y+HRIGRTGRAGR G+A + + + Sbjct: 375 LVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLR 434 Query: 359 AIEKLIEKKVDWL 371 AIEK + V+ + Sbjct: 435 AIEKATRQPVEQM 447 >gi|15230730|ref|NP_187299.1| DEAD box RNA helicase, putative [Arabidopsis thaliana] gi|75313790|sp|Q9SQV1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gi|6437557|gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gi|332640879|gb|AEE74400.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] Length = 1088 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 216/364 (59%), Gaps = 2/364 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL P+++ +L AG+ PTPIQ +T P+ LQ D+ IA+TG+GKT +++P + Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 496 Query: 63 LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L R R P LIL PTRELA Q+ D ++G++ ++ L GG P Q K+LER Sbjct: 497 LRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELER 556 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GAD+++ TPGR+ D + + +LV+DEADRMLDMGF P I+ I + +P RQTL Sbjct: 557 GADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTL 616 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +++AT E++K++ + L NP ++ + A +K L+Q+L+S Sbjct: 617 MYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRS 676 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q+ IIFC+ K+ +L S+ + F IHG+ Q R +L+ F+ G +++A Sbjct: 677 QERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIA 735 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G AFT ++D K+ + Sbjct: 736 TDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLI 795 Query: 362 KLIE 365 K++E Sbjct: 796 KVLE 799 >gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Vibrio angustum S14] gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Vibrio angustum S14] Length = 654 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L+ ++ A+ + G+V PTPIQ +IPL+L D G AQTGTGKTA+F LP+L Sbjct: 33 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + P+ +++ PTRELA QVA + G+N L V + GG Q + L+ Sbjct: 93 KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 149 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+ D +R +L ++ + V+DEAD ML MGF+ + I P T Q Sbjct: 150 NGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQR 209 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++++ + FL+NP RI+V + T +E F +K + +LL+ Sbjct: 210 VLFSATMPPIVKEIVDRFLRNPARIDVAGENRTVSKVEQQFWVVKG--VEKDEAMSRLLE 267 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++DT I+F +++ L L +GF A+HG+I Q R + + + K G I ++V Sbjct: 268 TEDT-DASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 326 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + I Sbjct: 327 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTI 386 Query: 361 EKLIEKKVD 369 E++ + +++ Sbjct: 387 ERVTKSRME 395 >gi|299140955|ref|ZP_07034093.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735] gi|298577921|gb|EFI49789.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735] Length = 542 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 234/373 (62%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + K TP+Q IP +L+ +DV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFDELELNDNVLDALYDMRFEKCTPVQENCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116 + L+ G LI+ PTRELA Q+ + +G N +VA+ G G ++ + Sbjct: 61 SKLDDGGYPDNAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 KSLQLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQ 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 T QT++FSATM D+++ +++ L+NPK I++ S AE I+ Y ++K +++ Sbjct: 181 TCQTIMFSATMPDKIEDLAKTLLKNPKVIKLAV-SKPAEKIKQSAYVCYE--TQKMGIIK 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + ++ D ++ IIFC K V + +L+++ + +H ++DQ +R ++ FK G Sbjct: 238 DIFKNGD-LERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQF 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R G A T V+++DI + Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSEDDIYY 356 Query: 357 IDAIEKLIEKKVD 369 IEK +EK+V+ Sbjct: 357 FQQIEKFLEKEVE 369 >gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 405 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LS + + ++ + GY KPT IQ K IP V+ D+ AQTGTGKTA+F +P I Sbjct: 8 FKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVP---I 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +EK + + + LIL PTRELA QVA ++ GKN + + GG Q L++G Sbjct: 65 VEKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKKG 124 Query: 123 ADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +DV++ TPGR+ D RG L ++N+++ V+DEADRML+MGFI I+ I S +P RQ L Sbjct: 125 SDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQNL 184 Query: 182 LFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 LFSATM E+ ++E FL +N + I V T E I+ V ++ K +L Sbjct: 185 LFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVL--- 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 SQ+ + IIF K L L ++GF+ AIHG+ Q+ R +L NF+ G +++ Sbjct: 242 --SQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V V N+ +P AE+YIHRIGRTGRAGR G A +++ + K + Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQ 359 Query: 359 AIEKLIEKKVDWLN 372 I+K + ++ +N Sbjct: 360 NIQKKTKANIEVIN 373 >gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2] gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2] Length = 516 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 142/354 (40%), Positives = 218/354 (61%), Gaps = 6/354 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +TIPL L DV G AQTGTGKTA+F +P++ + ++ +++ Sbjct: 2 GFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQ---AIVIA 58 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QV++ K G++ V + GG Q + L++ +++ TPGR+LDH NR Sbjct: 59 PTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINR 118 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 + + + +V+DEAD ML+MGFI I++I S VP QTLLFSATM +++++E F+ Sbjct: 119 RTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFM 178 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 NP+ ++V T I+ ++ + + KK L +LL Q + + I+F K+ V Sbjct: 179 TNPEHVKVKAKEMTVSNIQQFYLEVHER--KKFDTLTRLLDIQ-SPELAIVFGRTKRRVD 235 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 L +L +G++ IHG++ Q RM L FK+G I+++VA+D+AARGLDI V HV+N Sbjct: 236 ELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYN 295 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 FDVP E+Y+HRIGRTGRAG+ G A T + + + AIE+ ++K+D + Sbjct: 296 FDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKA 349 >gi|307720439|ref|YP_003891579.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978532|gb|ADN08567.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica DSM 16294] Length = 518 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 226/364 (62%), Gaps = 11/364 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL P+++ +V AG+ P+PIQ + IP++L+ D+ G A TGTGKTA+F LP+L+ Sbjct: 21 FDSLGLKPEILKSVKFAGFTIPSPIQAQAIPIILEGRDMVGQAHTGTGKTAAFSLPVLSN 80 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + K V M L++ PTRELA QV+D KYG+N + + GG ++ Q + RG Sbjct: 81 M-KLDGSVEM---LVITPTRELATQVSDEIFKYGRNLGVKTVTVYGGSSYKRQLDLIGRG 136 Query: 123 ADVLICTPGRILDHFNRGKLLMNNI--EILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 A V++ TPGR+LD R ++NN ++V+DEAD MLDMGF+ I I S +P RQT Sbjct: 137 ASVVVATPGRMLDLLKRN--MLNNFAPSVVVLDEADEMLDMGFLDDINEIFSYLPTNRQT 194 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ ++ L++P + + +T IE + ++ + A++ +L+ Sbjct: 195 LLFSATMPQPIKNLANRILKDPAFVSITKGETTNTDIEQEYYV-IDEHERDDAII-RLMD 252 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++DT K ++FC K V L + L G+ +HG+++QR R ++ FK +++++V Sbjct: 253 AEDT-KKAVVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKNDSVKVLV 311 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+ + ++ HVFN+ +P E+Y+HRIGRTGRAG GKA TL+ + K + I Sbjct: 312 ATDVAARGIHVNNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRI 371 Query: 361 EKLI 364 ++ + Sbjct: 372 KQKV 375 >gi|90020267|ref|YP_526094.1| ATP-dependent RNA helicase RhlB [Saccharophagus degradans 2-40] gi|89949867|gb|ABD79882.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40] Length = 392 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 141/376 (37%), Positives = 238/376 (63%), Gaps = 12/376 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L LSP V+ A+ D + + + IQ K++P L+ HDV G AQTGTGKTA+F++ ++ Sbjct: 6 LSFEELNLSPLVMRALSDLKFTECSAIQAKSLPFTLRGHDVLGKAQTGTGKTAAFLIALI 65 Query: 61 -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 T +E+ R R+L++ PTRELA Q+A + E K+ +L V +L+GG+ + Q Sbjct: 66 EDLLGTPIEEERY-AGEARSLVIAPTRELAMQIAKDAENLVKHTDLKVHILVGGVDYAKQ 124 Query: 116 NKKLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 +KL+ D+L+ TPGR+LD + + ++ +E+LVIDEADRMLDMGFIP ++ I + Sbjct: 125 LQKLQAEHIDILVATPGRLLDFCEKRAVYLDQVEVLVIDEADRMLDMGFIPQVKRIVRMT 184 Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 P + RQTLLFSAT ++++ ++SE ++ P + + + A+ ++ V +K Sbjct: 185 PPSTHRQTLLFSATFSEDVLRLSEQWMHEPVTVSIEDENVAADRVKQ--VVYLVSSEEKF 242 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 +L L++ D ++N +IF N++ +L H L+++GF V + G I Q R++ L +F+ Sbjct: 243 TVLGNLMREPD-VENIMIFANRRDQCRDLHHKLQRRGFRVGLLSGEIAQNKRIRTLEDFR 301 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G + +VA+D+A RG+ I + HV N+ +P E+Y+HRIGRTGRAG+ G + +L ++ Sbjct: 302 TGKLTALVATDVAGRGIHIDGISHVVNYTLPEEPEDYVHRIGRTGRAGKEGVSVSLACED 361 Query: 353 DIKHIDAIEKLIEKKV 368 D ++ I++L+ +K+ Sbjct: 362 DALRLEPIQELLGRKI 377 >gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965] gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965] Length = 497 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 135/357 (37%), Positives = 220/357 (61%), Gaps = 10/357 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +++ AV D G+ +P+PIQ + +P+ +Q D+ G AQTGTGKTA+F +P+L Sbjct: 11 FKELGLSEEIMKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGIPILQR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + P+ ++L PTRELA Q A+ + N+ + GG E Q + L++ Sbjct: 71 IDTSKPG---PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKK 127 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++++ TPGR++DH R + ++N++I V+DE D M+DMGFI I+ I + P RQTL Sbjct: 128 TNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLF 187 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQLLQ 240 FSATM +++++ +FL P+ +++ + T + IE ++ ++ C LL +Q Sbjct: 188 FSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLLD--MQ 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + I+F K+ + +L+K+ +S +HG++ Q+ R ++ FKEGTI +V Sbjct: 246 SPEL---AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLV 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 A+D+AARGLDI V HV+NFD+P E Y+HR+GRTGRAG+ G A T V ++ + Sbjct: 303 ATDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQL 359 >gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM 20603] Length = 657 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADL L ++ AV D G+ P+ IQ + IP++ + D+ GIAQTGTGKTA+F +P+L Sbjct: 49 LTFADLNLPNQIQRAVDDLGFTVPSKIQQQAIPVLFEGRDITGIAQTGTGKTAAFGIPLL 108 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ VR + L+L PTRELA QV++ E + ++ L + GG P+ Q + L Sbjct: 109 ASIDTS---VRQVQALVLAPTRELAIQVSEAIESFARHMPGLETLAVYGGSPYPPQIRAL 165 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G V++ TPGR++DH RG L ++ + LV+DEAD ML MGF ++ + S P RQ Sbjct: 166 KTGVHVVVGTPGRVIDHIERGTLDLSQVRFLVLDEADEMLRMGFADDVEKVFSETPADRQ 225 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++V++ L NP I V S+T I+ + + K L ++L Sbjct: 226 VALFSATMPPAIRRVAQRHLTNPVEIAVARQSTTVTAIDQEYAVV--PFRHKTGSLYRVL 283 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++ I+FC + + +L ++G S I G++ Q+ R KI+ + G + ++ Sbjct: 284 ATSD-VEAAIVFCRTRGAAEEVGAALIERGVSAATISGDVPQKDREKIVERLRNGQLDVL 342 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ +G V NFD+P E Y+HRIGRTGRAGR G+A + + + + + Sbjct: 343 VATDVAARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRQGRALSFITPAERGKLRS 402 Query: 360 IEKLIEKKV 368 IE+ I ++ Sbjct: 403 IERTIRTEL 411 >gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002] gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002] gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002] Length = 487 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 217/366 (59%), Gaps = 5/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +GLS V + + G+ KPT IQ K IP +L+ DV G++QTGTGKTA++ LP L Sbjct: 5 FQTIGLSDARVDLLENIGFEKPTEIQSKAIPAILEGRDVVGLSQTGTGKTAAYSLPFL-- 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK + + LIL PTRELA QV + +++ + L V + GG E Q + L++G Sbjct: 63 -EKIDLEQKTVQGLILTPTRELAVQVTQSLKEFAVDRRLWVLTVCGGQSMERQIRSLQKG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++D RGKL + V+DEAD ML MGFI ++ I P TRQT+ Sbjct: 122 VHIVVGTPGRVIDLLERGKLSFEELRWAVLDEADEMLSMGFIDDVKKILRQSPKTRQTVC 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++ + ENFL +P I + P T + I +SK ALL L + Sbjct: 182 FSATMPPAIRDLVENFLNDPINITIKQPQVTPDRIAQEVYMIPRGWSKTKALLPILEMAN 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ IIF K+ L + L + G S HG+++Q R K++ FK+G I+++VA+ Sbjct: 242 P--ESAIIFVRTKRTASELTNELVEAGQSADEYHGDLNQNQREKLVRRFKDGKIKMIVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ ++ HV NFD+P+ E+YIHRIGRTGRAG+ G A LV D + + IE+ Sbjct: 300 DIAARGLDVENLSHVINFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIER 359 Query: 363 LIEKKV 368 +++ + Sbjct: 360 RVKQSL 365 >gi|315230959|ref|YP_004071395.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP] gi|315183987|gb|ADT84172.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP] Length = 389 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 9/364 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 M F LGLS + AV G+ +PT IQ + IPL L+ D+ G +QTGTGKTASF LP+ Sbjct: 8 MSFEKLGLSENTLGAVRRKGFSEPTDIQREVIPLFLRGDADIVGQSQTGTGKTASFALPL 67 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++ + V+ +IL PTRELA QVAD + + V + GG P Q + L Sbjct: 68 VDVINEYEREVQ---AIILTPTRELALQVADEIKSLRGKKRIKVLSVYGGQPIGPQIRAL 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +GA +++ TPGR+LDH RG L ++ I+ ++DEADRMLDMGFI I+ I P ++ Sbjct: 125 RKGAHIVVGTPGRVLDHIRRGTLRLDGIQYFILDEADRMLDMGFIDDIRAIFRETPRDKR 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM E+ K+++ +++ + I ++ +E ++ ++K ++L+++L Sbjct: 185 VLMFSATMPREVLKLAKRYMKEYELIRTSSDEPVPNLVEQEYIEVVP--ARKISVLERIL 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ GI+FC K+ L L + G+S A++G++ Q+SR + L FK I ++ Sbjct: 243 NSEFY---GIVFCQTKRETRILAEKLARIGYSAEALNGDMSQKSRERALMRFKRRKINIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ D+ H+ N+ +P AE YIHRIGRTGRAG+ GKA T + + + + Sbjct: 300 VATDVAARGIDVQDITHIVNYSLPQNAEMYIHRIGRTGRAGKKGKAITFIMPGEYRRLRY 359 Query: 360 IEKL 363 IE + Sbjct: 360 IENI 363 >gi|170696968|ref|ZP_02888064.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] gi|170138142|gb|EDT06374.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] Length = 465 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 151/393 (38%), Positives = 229/393 (58%), Gaps = 16/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GYV TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 9 FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LDTRRFDVQ---AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + +++ + QLL Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDNSKIRQRFY---EVAETERLHAVGQLLNH 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361 Query: 362 KLIEKKVDWL-------NGDLSSLNPPLEKIDI 387 + +++ V+W G+ +L PP+E + I Sbjct: 362 QALKRDVEWHPLAELKPAGN-DTLLPPMETLQI 393 >gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 402 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 148/342 (43%), Positives = 212/342 (61%), Gaps = 16/342 (4%) Query: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRT---LILEP 80 PTPIQI+ IPL LQ D+ G AQTGTGKT +F +P++ L + P T L++ P Sbjct: 19 PTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKL------LNEPNTGSALVIVP 72 Query: 81 TRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 TRELA QV + K +N L VALLIGG P Q +L++ ++I TPGRI+DH R Sbjct: 73 TRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKPQIVIGTPGRIIDHIER 132 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 L+ N+ +LV+DE DRM DMGF I+ I +P RQTL+FSAT+ ++ K++E +L Sbjct: 133 KTLINRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMFSATLPGDIVKLAEKYL 192 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLLQSQDTMKNGIIFCNQKKNV 258 P+RI V+ ++T+ I+ V YA S+K L+ QL Q + ++ IIF K+ Sbjct: 193 NRPERISVDCEATTSVKIKQEIV--YASESEKYEKLVTQLCQREGSI---IIFVKTKRGA 247 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 L + L K +S AIHG++ Q R +++++F+ G Q+MVA+D+A+RGLDIP + HV Sbjct: 248 DQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHVI 307 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 N+D P +YIHRIGRT RAG G A + V +D + + A+ Sbjct: 308 NYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPAL 349 >gi|253574214|ref|ZP_04851556.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846691|gb|EES74697.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 375 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 223/369 (60%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +SP +V + G V PTP+Q IP++ D AQTGTGKT +F+LP I Sbjct: 5 FESLNVSPLLVRKLQGQGIVNPTPVQAAAIPVLQSGEDAIVQAQTGTGKTLAFLLP---I 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LEK R + LI+ PTRELA Q+ K + L+V GG E Q +KL+ Sbjct: 62 LEKIRPERPEAQALIITPTRELAIQITAEARKLAEAMEGLSVLAAYGGQDVERQLRKLKN 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA ++I TPGR+LDH RG L + + LV+DEAD+ML MGF+ ++ I SLVP +RQT+ Sbjct: 122 GAQLVIGTPGRLLDHLRRGSLTLGAVRYLVLDEADQMLHMGFLAEVEEILSLVPRSRQTM 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++++ ++ P+ I++ T T ++I V +K+ AL++ + Sbjct: 182 LFSATMPGNVKRLAKTYMDKPRDIQIAETSRVTLDSIRQILVEC-TDRTKQSALIESIRS 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + +IFC K+ L +L+ GF +HG++ Q R +++ F+ ++L+V Sbjct: 241 QRPYL--AVIFCRTKRRASTLNEALQAAGFQSDELHGDLSQAKREQVMRAFRSAKLELLV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HVFN+D+P+ ++YIHRIGRTGRAG G A T A +D++ + I Sbjct: 299 ATDVAARGIDVEGVTHVFNYDIPHDVDSYIHRIGRTGRAGEKGVAVTFAAPKDMEALRLI 358 Query: 361 EKLIEKKVD 369 E+ I +K++ Sbjct: 359 ERGIGRKLE 367 >gi|269960877|ref|ZP_06175247.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] gi|269834317|gb|EEZ88406.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] Length = 459 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 225/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +GL+P ++ + Y TPIQ ++P +L + DV G +TG+GKTA+F L +L+ Sbjct: 6 FDQVGLTPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA G++ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRSIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH +G++ + + LV+DEADRMLDMGF + I P RQTL Sbjct: 123 GAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLDMGFQDALDAIIEAAPKQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++++++ +Q+P+ I+V + T+ +I F ++ AL LL Sbjct: 183 LFSATFPEKIEQIAQRIMQSPEMIKVESTHDTS-SIAQYFYNVEGSEARDEALANLLLTH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L F ++ ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHKGFSVIDLHGDLEQRERDQALVQFANKSVSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++D + IE Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359 Query: 362 KLIEKKV 368 + ++ V Sbjct: 360 EYLDMDV 366 >gi|189467630|ref|ZP_03016415.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM 17393] gi|189435894|gb|EDV04879.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM 17393] Length = 482 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 156/422 (36%), Positives = 237/422 (56%), Gaps = 14/422 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + +S V A+L+ Y PT IQ + IP L D+ G+AQTGTGKTA+F +P++ Sbjct: 2 MTFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAVPII 61 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L + + R R LIL PTRELA Q+ ++ Y + L ++ GG+ ++Q Sbjct: 62 EQLLAAPMPQRKGAPRSIRALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKSQ 121 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L G D+L TPGR+LD ++G + ++++ V+DEADRMLDMGFI ++ + +P Sbjct: 122 TDELRAGTDILTATPGRLLDLMSQGFIRLDDVRHFVLDEADRMLDMGFIHDVKRLLPKLP 181 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +QTL FSATM D + +++++ L NP R+EV SS E I + +K LL Sbjct: 182 PKKQTLFFSATMPDSIDRLAKSLLHNPARVEVTPASSVVEIISQSVY--RVEKPQKKELL 239 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 QLL + + ++F K N+ L ++G + +IHG+ Q +R + LSNFKEG Sbjct: 240 AQLLLGEAGHQV-LVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQRALSNFKEGR 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +++A+D+AARG+DI + V NFD+P+ E Y+HRIGRTGRAG G+A + E+ Sbjct: 299 SNVIIATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTGRAGCEGRAIAFCSSEEAP 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKI------DIAQHNHARKNNPIPQKSTGFDRR 409 + IEKL K+ +L SL P +IA + +R PQ + + R Sbjct: 359 MLREIEKLTGIKLVQQKHNLPSLGEPAASPTTSSAQNIALKSQSRTQGGRPQNNRRREDR 418 Query: 410 KK 411 K+ Sbjct: 419 KR 420 >gi|148263018|ref|YP_001229724.1| DEAD/DEAH box helicase domain-containing protein [Geobacter uraniireducens Rf4] gi|146396518|gb|ABQ25151.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens Rf4] Length = 451 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 150/381 (39%), Positives = 226/381 (59%), Gaps = 9/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L +V+ + G+ + TPIQ K +P L DV G AQTGTGKTA+F++ + Sbjct: 1 MKFTDLNLPEQVLQGIAYTGFTECTPIQEKALPPALAGKDVAGQAQTGTGKTAAFLISLF 60 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 T L K PR LIL PTREL Q+ + ++ GK+ T+ + GG+ + Q Sbjct: 61 TRLLKQEKVGTEHHPRALILAPTRELVVQIEKDAQQLGKHTGFTIQAIYGGVDYMKQKNA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPF- 176 L+ G D++I TPGR++D+ + + NIE LVIDEADRM DMGFI ++ I L PF Sbjct: 121 LKEGVDIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFD 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ L+FSAT+ + +++ F+ P+++ V TAE +E V + +K LL Sbjct: 181 ERQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQ--VIYHVSRKEKFPLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+ ++ M+ +IF N K+ L L F I G+++QR R++IL +FK G + Sbjct: 239 GLLR-KEGMERTMIFVNTKREAEFLFDRLNVNDFPARVISGDVEQRKRLRILEDFKSGKL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +M+A+D+A+RGL I V HV N+D+P AE+Y+HRIGRT RAG GKA +L ++ + Sbjct: 298 PIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGALY 357 Query: 357 IDAIEKLIEKK--VDWLNGDL 375 ++ I + I+++ V+W +L Sbjct: 358 LEDIHEYIKERIPVEWAEDEL 378 >gi|323497187|ref|ZP_08102207.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] gi|323317762|gb|EGA70753.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] Length = 419 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 230/384 (59%), Gaps = 11/384 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LGLS ++ + G+ PT +Q ++IP +L DV AQTGTGKTA+F LP++ Sbjct: 4 EFESLGLSQPLLTTLNTLGFTTPTQVQQQSIPHILLGKDVLAGAQTGTGKTAAFGLPIIQ 63 Query: 62 ILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + + VR P R L+L PTRELA QV DN +Y ++ L + GG Q Sbjct: 64 QLIQSES-VRDPQGNDVRALVLVPTRELAQQVYDNLVQYAESTPLKIVTAYGGTSINVQT 122 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L +G D+LI TPGR++DH + + E LV+DEADRMLDMGF+P IQ I Sbjct: 123 RNLHQGCDILIVTPGRLIDHMFCKNVSLAKTEYLVLDEADRMLDMGFMPDIQRILKRFNP 182 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL FSAT ++ ++ ++P I+V+ +STAET++ +K LL Sbjct: 183 ERQTLFFSATFDKRIKNIAYKLQKDPIEIQVSPSNSTAETVKQMVYP--VDKKRKAELLA 240 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S++ + ++F K+ L L+ G +I+G+ Q +R K L +FK G + Sbjct: 241 YLIGSRN-WQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGKV 299 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + ++A+D+AARGLDI + V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++ Sbjct: 300 RALIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSQDEHYL 359 Query: 357 IDAIEKLIEKKV--DWLNGDLSSL 378 ++AIE+L++ ++ +WL G SL Sbjct: 360 LEAIERLLDTRLPQEWLQGFEPSL 383 >gi|170760570|ref|YP_001788120.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str. Loch Maree] gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A3 str. Loch Maree] Length = 524 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 235/384 (61%), Gaps = 7/384 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L L+ V+ A+ G+ P+ IQ K+IP+VL+ DV AQTGTGKT +F P+++ Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + + + L+L PTRELA Q+ D ++ K V + GG E Q K ++ Sbjct: 65 SLCDNEKK-KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGRILDH NR L + I+ L++DEAD ML+MGFI I+ I P +QT+ Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTPEEKQTM 183 Query: 182 LFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++K++ N++ ++ + I + S T + I + A + K + +++ Sbjct: 184 LFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKIAQHYFA--VKNKDKLEAICRIID 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ ++ IIFC K+ V L +++ +G++V +HG++ Q R+ L FK+ T+ +V Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+D+P AE+Y+HRIGRTGRA + G A++LV ++ I I Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++ + K+ +L +L LEK Sbjct: 361 ERITKSKI--TKKELPTLEDILEK 382 >gi|168015786|ref|XP_001760431.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688445|gb|EDQ74822.1| predicted protein [Physcomitrella patens subsp. patens] Length = 675 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 143/367 (38%), Positives = 223/367 (60%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +GL P ++ + AG+ PTPIQ ++ P+ +Q D+ IA+TG+GKT +++P Sbjct: 155 LSFEAVGLPPDMLREIQAAGFKSPTPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPAF 214 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 LE+ R R+ P L++ PTRELA Q+ + K+G++ +T + GG P Q + + Sbjct: 215 LHLERHRNNSRLGPSVLVIAPTRELATQIQEECVKFGRSSRITSTCVYGGAPKGPQLRDI 274 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD++I TPGR+ D K+ + + LV+DEADRMLDMGF P I+ I + + RQ Sbjct: 275 ERGADIVIATPGRLNDFLEVKKISLRQVSYLVLDEADRMLDMGFEPQIRKIVNEILSRRQ 334 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 TL+++AT E++K++ + L NP ++ + NT +A V Y K+ L+Q+ Sbjct: 335 TLMYTATWPKEVRKIAGDLLINPVQVNIGNTDELSANKSITQHVEVVVPYEKQ-RRLEQI 393 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+SQ+ I+FC+ K+ L +L + F AIHG+ Q R +LS F+ G + Sbjct: 394 LRSQEPGSKIIVFCSTKRMCDMLSRNLGRD-FGAAAIHGDKSQSERDFVLSQFRTGRTPI 452 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T +++D K+ Sbjct: 453 LVATDVAARGLDIKDIRFVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFSEQDGKYAK 512 Query: 359 AIEKLIE 365 + K++E Sbjct: 513 ELIKVLE 519 >gi|226229150|ref|YP_002763256.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27] gi|226092341|dbj|BAH40786.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27] Length = 498 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 150/390 (38%), Positives = 222/390 (56%), Gaps = 9/390 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P + + + G+ +PTPIQ + IP L+ DV A TG+GKT +F+LP+L Sbjct: 3 MTFSSLQLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLLPIL 62 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++ K R R L+L PTRELAAQ+ ++ + + LT A + GG+ Q Sbjct: 63 HQLMSKPRGNTR---ALVLTPTRELAAQILESLQDVTTHTPLTGAAVFGGVGMGPQEHAF 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178 G DV++ TPGR+LDHF + ++ +E LV+DEADRMLDMGF+P I+ I +P R Sbjct: 120 RSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRKR 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM + +++ L P + + ++ A+ I + K ALL L Sbjct: 180 QTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQEL--KSALLVAL 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ D M ++F K L L G IHGN Q R + L+ FK+G+ Q+ Sbjct: 238 LKRGD-MPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQV 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ +GHV NFDVP AE+YIHR+GRT RA G+AFT V+ E+ + Sbjct: 297 LVATDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGELK 356 Query: 359 AIEKLIEKKVDWLN-GDLSSLNPPLEKIDI 387 IE+ I++ + + D P +K+++ Sbjct: 357 LIERAIKRALPRVTVPDFDYHAKPTQKLEV 386 >gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC 17982] gi|153799192|gb|EDN81612.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC 17982] Length = 581 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 217/370 (58%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G++ +V A+ D G P PIQ T+ L+RHD+ G A+TGTGKT F +P+L Sbjct: 65 FADFGVTDPIVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVLED 124 Query: 63 L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E+G + P+ LI+ PTREL QVA + + K + + + GG+ FE Q Sbjct: 125 VIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQ 184 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + LERGAD+++ TPGR++D +G L ++ +E +V+DEAD MLD+GF+P ++ + S VP Sbjct: 185 IEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVP 244 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ F+ P I P +T+ Y ++ K + Sbjct: 245 ENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEV 304 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + +IFC K+ L L +GF+V ++HG++ Q +R + L F+ G Sbjct: 305 VARILQAEGRGRT-VIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNG 363 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ P + YIHRIGRTGRAG G A T V +D Sbjct: 364 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 423 Query: 355 KHIDAIEKLI 364 I K + Sbjct: 424 PRWSLISKAL 433 >gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola ACS-139-V-Col8] gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola ACS-139-V-Col8] Length = 526 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 146/385 (37%), Positives = 230/385 (59%), Gaps = 14/385 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+DL L +++ + + G+ +PTPIQ + IP VLQ D+ G AQTGTGKTA+F LPML Sbjct: 1 MKFSDLNLKTELIETLDELGFEEPTPIQQQAIPFVLQGRDLVGQAQTGTGKTAAFGLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ R + LI+ PTRELA QV D K V + GG Q +++ Sbjct: 61 QGLDTDH---RALQALIIAPTRELAIQVHDELYSLSKGLKTKVYAVYGGYSIGKQIDRIQ 117 Query: 121 R-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + V++ TPGR+LD R + + ++ L++DEAD ML+MGFI I+ I P +RQ Sbjct: 118 KLKPQVIVGTPGRLLDLMRRQIIDTSYLKTLIMDEADEMLNMGFIEDIKAIVEQTPSSRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSATM +Q +++ FL P +++ TA+ I+ FV + S+K +L ++L Sbjct: 178 TLMFSATMPKSVQNLAQQFLTQPAEVKIEAKHLTADLIDQYFVK--CRDSEKFDILTRML 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + K IIF KK V + L +G+ IHG++ Q+ R ++++ FK+G ++L+ Sbjct: 236 DIESPDK-AIIFARTKKRVDEIGRGLSLRGYDAELIHGDVTQQKRTQVMNEFKQGRLELL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV+N+D+P E+Y+HRIGRTGRAG G++ T V + ++ ++ Sbjct: 295 VATDVAARGIDVSGVTHVYNYDIPQDPESYVHRIGRTGRAGNEGQSVTFVMESELPYLRT 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEK 384 IE L + + ++ + PP ++ Sbjct: 355 IESLTKNQ-------MTPMRPPTDQ 372 >gi|227538389|ref|ZP_03968438.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33300] gi|227241771|gb|EEI91786.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33300] Length = 603 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 142/366 (38%), Positives = 233/366 (63%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-VCGIAQTGTGKTASFVLPMLT 61 F +LG+ +VV A+ + G+ KP+PIQ K IP++L +D G+AQTGTGKTA+F LP+L Sbjct: 4 FLELGIRHEVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPLLE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L+ + + P+ L+L PTREL Q+A + EK+ K + + V + GG Q +++ Sbjct: 64 QLDFSQ---KHPQALVLCPTRELCLQIAKDLEKFAKYIDDVHVVAVYGGANISDQLRQIR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + +N++ +V+DEAD ML+MGF I NI S P ++T Sbjct: 121 RGVQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E++++++N++ +P + V T ++ IEH + A+ K A ++++ Sbjct: 181 WLFSATMPREVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAK--DKYAAFKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + GI+FC K + +L K G++ ++HG++ Q+ R K++ +++ ++QL++ Sbjct: 239 SNPEI-FGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HV NF +P+ ENY HR GRT RAG+ G + +LV +++ I I Sbjct: 298 ATDVAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHI 357 Query: 361 EKLIEK 366 EK+I K Sbjct: 358 EKIIGK 363 >gi|298387076|ref|ZP_06996630.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 1_1_14] gi|298260226|gb|EFI03096.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 1_1_14] Length = 647 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 228/367 (62%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QID---VKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ + +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+LQN K I + + + ++H VA Q K A L++++ Sbjct: 181 LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKH--VAYTVQAKDKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|29348712|ref|NP_812215.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|29340618|gb|AAO78409.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] Length = 647 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 228/367 (62%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QID---VKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ + +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+LQN K I + + + ++H VA Q K A L++++ Sbjct: 181 LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKH--VAYTVQAKDKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|327538177|gb|EGF24861.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula baltica WH47] Length = 449 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 149/365 (40%), Positives = 218/365 (59%), Gaps = 5/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LSP + AV DAG+ P+PIQ IP L DV G A+TGTGKTA+F +P+L Sbjct: 43 FDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQ 102 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ R P+ +++ PTRELA QVA E+ +A+L GG Q ++LE G Sbjct: 103 LDSLED-CRDPQAIVIVPTRELADQVAAEAERLASGVPTEIAVLSGGKNMNRQLRQLENG 161 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+ DH RG L NN+ +V+DEADRMLD+GF P I+ I P RQTLL Sbjct: 162 TQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLL 221 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SAT+ +++++E+++ P I+ +TIE + T AQ K LL+ LL+ + Sbjct: 222 LSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYF-TIAQ-DDKVRLLESLLK-R 278 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC-AIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIFC K+ L L + S C AIHG++ QR R ++L ++G ++ +VA Sbjct: 279 EKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVA 338 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ RG+DI + H+ NFDVP ++Y+HR+GRTGR GR G A+T V + + +IE Sbjct: 339 TDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILTSIE 398 Query: 362 KLIEK 366 + I K Sbjct: 399 QRINK 403 >gi|327400905|ref|YP_004341744.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316413|gb|AEA47029.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus SNP6] Length = 389 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 146/376 (38%), Positives = 233/376 (61%), Gaps = 23/376 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+++ LS ++ + G +PT IQ K IPLV + DV ++TG+GKT +F +P++ Sbjct: 3 LKFSEMNLSEGMLGLLEMHGIEEPTEIQTKAIPLVEKGFDVVAQSETGSGKTLAFAIPII 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E G+ + L+L PTRELA Q+ + F ++ ++ L +A + GG+P E Q + L Sbjct: 63 EAAETGKG----IQALVLTPTRELANQIENEFRRFSRHKGLRIANIHGGVPIEPQIRDLR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R ADV++ TPGR+LDH R + + +E VIDEADRMLDMGFI ++ I P TRQ+ Sbjct: 119 R-ADVVVGTPGRLLDHVRRKTVDFSRVEYFVIDEADRMLDMGFIDDVKAIMRCTPKTRQS 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY---AQYSKKCALLQQ 237 LLFSAT+ E++ ++ +++NPK I T E ++ + Y S+K ++L Sbjct: 178 LLFSATIPPEVRALASRYMKNPKTIR------TKELVDPKLLNQYYYDVDDSEKFSMLVH 231 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ ++ K ++F N +K + +L GF +HG + Q R +++ F++G I+ Sbjct: 232 LLRKENP-KKALVFTNMRKTSDIVAKNLFMHGFKASVLHGGLTQSKRDRMMERFRKGEIR 290 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353 ++VA+D+A+RGLD+ V HVFN+DVP++AE+YIHRIGRT RAG++GKA T++ ++D Sbjct: 291 VLVATDVASRGLDVKGVTHVFNYDVPSKAEDYIHRIGRTARAGKNGKAVTILGRKDHGSF 350 Query: 354 ----IKHIDAIEKLIE 365 +K+ IE+L E Sbjct: 351 RRIMVKYGLTIERLEE 366 >gi|322420162|ref|YP_004199385.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp. M18] gi|320126549|gb|ADW14109.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18] Length = 477 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 149/381 (39%), Positives = 223/381 (58%), Gaps = 9/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L V+ + + G+ TPIQ K +PL L DV G AQTGTGKTA+F++ + Sbjct: 1 MKFTELQLPDLVLKGIEETGFTDCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 T L ++ PR LIL PTREL Q+ + + GK + + GG+ + Q Sbjct: 61 TRLLNQQKTGAEHHPRALILAPTRELVVQIEKDAQTLGKYTGFNIQAIYGGVDYMKQRDA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176 L+ GAD++I TPGR++D+ + + ++E LVIDEADRM DMGFI ++ I +P Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSLKDVEALVIDEADRMFDMGFIADLRFILRRLPTYD 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT+ + +++ F+ P+++ V TAE +E V +A +K LL Sbjct: 181 KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQ--VLYHASRKEKFPLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+ M+ +IF N K+ L L F I G+++QR RMKILS+FK G + Sbjct: 239 GLLRKMG-MERTMIFVNTKREAEYLQDRLNANEFPCKVISGDVEQRKRMKILSDFKAGIL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +M+A+D+A+RG+ I V HV N+D+P E+Y+HRIGRT RAG G A +L ++ + Sbjct: 298 PIMIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISLADEDGAFY 357 Query: 357 IDAIEKLIEKKV--DWLNGDL 375 I+AI+ I++K+ +W D+ Sbjct: 358 IEAIQDFIKQKIPTEWAEDDM 378 >gi|304310488|ref|YP_003810086.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1] gi|301796221|emb|CBL44429.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1] Length = 527 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 225/371 (60%), Gaps = 4/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+DLGL+ ++V + GY + TP+Q IP LQ D+ + TG+GKTA+F+LP L Sbjct: 1 MNFSDLGLNTRLVSTLQALGYEQATPVQQLAIPAALQGGDLLASSHTGSGKTAAFLLPCL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 +++ + + R L+L PTRELA Q+ YG+ L A L+GG + Q K Sbjct: 61 QRMIDDPKPKSGAARMLVLTPTRELALQIEKAARNYGREVRRLNTACLVGGSSYFMQLKD 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L R ++LI TPGR+LDH RG++ ++ IE LV+DEADRMLDMGF I+ I + R Sbjct: 121 LGRQPEILIATPGRLLDHIERGRVDLSQIETLVLDEADRMLDMGFSDDIEAIVAETNPER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATM + ++ ++P+RIE+ IE + + K LL L Sbjct: 181 QTMLFSATMEGVVGALARKLTRDPQRIEIEKKPEQQAKIEQKLMMA-DDLAHKNRLLGAL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + ++ ++F K+ +L ++L +GFSV A+HG++ Q+ R + L+ ++G I + Sbjct: 240 LRDE-SLNQAVVFTATKRAAEDLSNTLRDEGFSVEALHGDMHQKLRNRTLTKLRQGRIGI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ + HV N+D P + E+Y+HRIGRTGRAGR G A TL ++ + I Sbjct: 299 LVATDVAARGIDVVGISHVINYDPPRQVEDYVHRIGRTGRAGRTGTAVTLAEFKERRIIR 358 Query: 359 AIEKLIEKKVD 369 IE+ + ++ Sbjct: 359 DIERFTGQPIE 369 >gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp. SPB78] gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp. SPB78] Length = 485 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 145/378 (38%), Positives = 224/378 (59%), Gaps = 22/378 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F DLG+ P+ A+ G V P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 11 FRDLGILPETAEALEAVGIVSPFPIQSLTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 70 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRA P+ L++ PTREL QV ++ + GK ++ V + GG + Sbjct: 71 VTVSADVEAGRATPDKLSEAPQALVVVPTRELCTQVTNDLQTAGKVRDVRVLAIYGGRAY 130 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL ++ + LV+DEAD MLD+GF+P ++ I + Sbjct: 131 EPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRALVLDEADEMLDLGFLPDVEKIVA 190 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP----SSTAETIEHCFVATYAQY 228 ++P RQT+LFSATM + ++ ++ P I +P ++ A T +H F A Sbjct: 191 MLPVKRQTMLFSATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVF---RAHS 247 Query: 229 SKKCALLQQLLQSQDTMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 K ++ ++LQ++ G+ IFC K+ ++ L+++GF+ A+HG++ Q +R + Sbjct: 248 MDKPEMVARILQAEG---RGLVMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQ 304 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L F+ G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAGR G A Sbjct: 305 ALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAV 364 Query: 347 TLVAKEDIKHIDAIEKLI 364 TLV +DI I K + Sbjct: 365 TLVDWDDIPRWQLINKAL 382 >gi|300770793|ref|ZP_07080671.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33861] gi|300762350|gb|EFK59168.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33861] Length = 603 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 142/366 (38%), Positives = 233/366 (63%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD-VCGIAQTGTGKTASFVLPMLT 61 F +LG+ +VV A+ + G+ KP+PIQ K IP++L +D G+AQTGTGKTA+F LP+L Sbjct: 4 FLELGIRHEVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPLLE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L+ + + P+ L+L PTREL Q+A + EK+ K + + V + GG Q +++ Sbjct: 64 QLDFSQ---KHPQALVLCPTRELCLQIAKDLEKFAKYIDGVHVVAVYGGANISDQLRQIR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + +N++ +V+DEAD ML+MGF I NI S P ++T Sbjct: 121 RGVQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E++++++N++ +P + V T ++ IEH + A+ K A ++++ Sbjct: 181 WLFSATMPREVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAK--DKYAAFKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + GI+FC K + +L K G++ ++HG++ Q+ R K++ +++ ++QL++ Sbjct: 239 SNPEI-FGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HV NF +P+ ENY HR GRT RAG+ G + +LV +++ I I Sbjct: 298 ATDVAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHI 357 Query: 361 EKLIEK 366 EK+I K Sbjct: 358 EKIIGK 363 >gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] Length = 472 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 225/364 (61%), Gaps = 8/364 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +TIPL L+ D+ G AQTGTGKTA+F +PM+ ++ + ++ +++ Sbjct: 2 GFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFGIPMIDKIDNTKDFIQ---GIVIA 58 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QV++ K G V + GG Q + L+ +++ TPGRILDH NR Sbjct: 59 PTRELAIQVSEELYKIGYGKRTKVLSIYGGQDINRQIRALKNKPHIIVGTPGRILDHINR 118 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 + ++++ ++DEAD ML+MGFI I+ I + +P RQTLLFSATM +++++E F+ Sbjct: 119 KTMRLDHVHTAILDEADEMLNMGFIDDIEAILAQIPEERQTLLFSATMPAPIRRMAERFM 178 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 + P+ + V T +IE ++ + + K +L +LL Q + + I+F K+ V Sbjct: 179 KEPQIVRVKAKEMTVSSIEQYYIEVHEK--NKFDVLTRLLDIQ-SPELAIVFGRTKRRVD 235 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 L +L +G+ IHG++ Q R+ +L FKEG+I ++VA+D+AARGLDI V HV+N Sbjct: 236 ELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVAARGLDISGVTHVYN 295 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379 FD+P E+Y+HRIGRTGRAG+ G A T + + ++ +E+ ++K++ + D +L+ Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVVERTTKRKMERM--DAPTLD 353 Query: 380 PPLE 383 LE Sbjct: 354 EALE 357 >gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM 266] Length = 589 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 224/372 (60%), Gaps = 7/372 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L ++ A+ + GY PTPIQ +TIPL+L+ D+ G AQTGTGKTA+F LP+L+ Sbjct: 10 NFRSLQLIEPLMKALEEVGYENPTPIQAQTIPLLLEGRDLLGQAQTGTGKTAAFALPILS 69 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 + R R P+ L+L PTRELA QVA+ F +Y + V + GG + Q + L+ Sbjct: 70 NITIAR---REPQALVLAPTRELAIQVAEAFHRYAEYLKGFHVLPIYGGQDYGIQLRMLK 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGFI ++ I P RQ Sbjct: 127 QGVHVVVGTPGRVMDHMRRGSLNLDGLQCLVLDEADEMLRMGFIDDVEWILDQTPKGRQV 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++++++ +L NP I + ++T E I + S K +L ++L+ Sbjct: 187 ALFSATLPVPIRRIAQKYLNNPAEITIQNKTTTVEAIRQRYWIVGG--SHKLDVLTRILE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF K + L L+ +G+ A++G++ Q R + + K G + +++ Sbjct: 245 V-EPFDGILIFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALNIVI 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P+ E+Y+HRIGRTGRAGR G+A V+ + + AI Sbjct: 304 ATDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAI 363 Query: 361 EKLIEKKVDWLN 372 EK K+++ + Sbjct: 364 EKATRKRIELME 375 >gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] gi|133739409|emb|CAL62459.1| Putative ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 468 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 147/393 (37%), Positives = 231/393 (58%), Gaps = 29/393 (7%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ A+ ++GY PT +Q + IP ++ D+ +QTG+GKTA+F+LP L Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60 Query: 61 TIL---------EKGR--------ARVR---------MPRTLILEPTRELAAQVADNFEK 94 E GR AR R P+ L+L PTRELA QV + +K Sbjct: 61 HKFAVQSEQQQPEGGRTPNQEAQSARSRGDRPRFKAAQPKMLVLTPTRELALQVTTSTDK 120 Query: 95 YGKNYNLTVAL-LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153 YG A+ ++GG+P+ Q + L + ++L+ TPGR++DH GK+ + ++ILV+D Sbjct: 121 YGAFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLD 180 Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213 EADRMLDMGFI I+ I + P RQT+LFSAT+ + +++ ++P I++ ++ Sbjct: 181 EADRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATK 240 Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273 E I+ V S K LL LL+ + TM ++F K++ + L GF+ Sbjct: 241 HENIKQG-VHFVDDLSHKNRLLDHLLRDE-TMDQAVVFTATKRDADTIADRLNIAGFAAA 298 Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333 A+HG++ Q +R + L + G I+++VA+D+AARG+D+P + HVFN+D+P E+Y+HRI Sbjct: 299 ALHGDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRI 358 Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 GRTGRAGR+G A +LV + ++ IE+ I++ Sbjct: 359 GRTGRAGRNGIAVSLVNHAEGMNVKRIERFIKQ 391 >gi|260582883|ref|ZP_05850668.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127] gi|260094096|gb|EEW77999.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127] Length = 613 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 229/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|226943135|ref|YP_002798208.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii DJ] gi|226718062|gb|ACO77233.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii DJ] Length = 434 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 145/368 (39%), Positives = 220/368 (59%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ + GY+ PTP+Q + IP +L D+ AQTG+GKTA F LP+L Sbjct: 1 MTFAYLGLIKPLLRTLPVLGYILPTPVQRQAIPALLAGRDLLVAAQTGSGKTAGFALPVL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 LE A R L+L PTRELA QV G L A+ GG+ Q Sbjct: 61 QRLTLEGSPAAANSVRALVLVPTRELAEQVHGTIRACGMELPLRTAVAYGGVSINPQMML 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G DVL+ TPGR+LD + + + + ++ILV+DEADRMLD+GF ++ + L+P R Sbjct: 121 LRPGIDVLVATPGRLLDLYRQNAVRFDQLQILVLDEADRMLDLGFSRELEELFVLLPAQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLL SAT ++E+++++ L++P IE++ P+S A ++ + +K L L Sbjct: 181 QTLLCSATFSEEIRQIATGLLRDPLTIEISAPNSAAPSVAQWMIPV--DKKRKAELFLHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++ + ++F +K V L L+++G+ AIHG++ Q +R++ L FK +Q+ Sbjct: 239 LE-RERWEQVLVFSRTRKGVERLAEELQQRGYRAGAIHGDLPQPARLRALEQFKADELQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + V N D+P E Y+HRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIQGLPLVVNLDLPVAPEYYVHRIGRTGRAGASGEAISLVCADEVEQLA 357 Query: 359 AIEKLIEK 366 AIE LI + Sbjct: 358 AIEALIRQ 365 >gi|281358292|ref|ZP_06244774.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC BAA-548] gi|281315119|gb|EFA99150.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC BAA-548] Length = 542 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 225/368 (61%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L V + AG+ TPIQ T+P +L+ D+ G AQTGTGKTA+F+L + T Sbjct: 127 FLDLPLHEDVQFGIQHAGFEYCTPIQALTLPALLEGRDLAGKAQTGTGKTAAFLLAVFTR 186 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L R P R L+L PTRELA Q+ + E LT ++ GG+ E Q + L Sbjct: 187 LLNHPLEERKPGCPRALVLAPTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHEKQRRSL 246 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177 E+ D++I TPGRI+D+ G L ++ +E+LVIDEADRMLDMGFIP ++ I S +P Sbjct: 247 EQPVDLVIGTPGRIIDYSRGGSLKLSKVEVLVIDEADRMLDMGFIPDVKRIVSQLPRKGE 306 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT+ D + +++ +L P +E +E IE F + +K ALL Sbjct: 307 RQTLLFSATLEDHILRLASGWLAEPVIVESEPEKMVSENIEQTFYSVL--RDEKLALLLY 364 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+++ +IF N+K + L + L + G+ V + G+I Q R+K+L F+ GT + Sbjct: 365 ILRTE-PYDRVLIFGNRKDVNLRLQYDLARFGYEVPVLSGDIPQEKRIKVLERFRAGTEK 423 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+ + DV V N+D+P RAE+Y+HRIGRTGRAG +GK+ + + + ++ Sbjct: 424 IVIATDVAARGIHVDDVSLVINYDLPERAEDYVHRIGRTGRAGHNGKSISFLCEYGAYYL 483 Query: 358 DAIEKLIE 365 IEKL++ Sbjct: 484 PDIEKLLD 491 >gi|54303428|ref|YP_133421.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9] gi|46916858|emb|CAG23621.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9] Length = 385 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 139/323 (43%), Positives = 208/323 (64%), Gaps = 4/323 (1%) Query: 40 DVCGIAQTGTGKTASFVLPMLTIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98 ++ AQTGTGKTASFVLP+L + R + R LIL PTRELA QV N +Y K+ Sbjct: 5 NLIAAAQTGTGKTASFVLPLLEKFSDMPPIRAKRIRALILVPTRELAVQVDANITQYSKH 64 Query: 99 YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 +LT + GG+ ++ Q ++L G D+L+ TPGR+LD + + L + +E+LV+DEADRM Sbjct: 65 LSLTSLAMYGGVDYKDQKQRLIDGVDILVATPGRLLDMYTQRALHFDELEVLVLDEADRM 124 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218 LDMGFI I I +P RQ LLFSAT++D+++ +++ ++ P I V+ S+T I+ Sbjct: 125 LDMGFIEDINKILERLPKERQNLLFSATLSDQVRVLAKTAVERPVEISVSPDSATTPQID 184 Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278 + KK ALL +++ ++ K +IF K L LEK+G + AIHG Sbjct: 185 QWLITV--DKDKKSALLSHMIK-ENEWKQALIFIQTKHGAAKLVSQLEKRGIAAEAIHGG 241 Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338 Q R K+L++FK G + L+VA+ +AARG+DI D+ V N+D+P++A++Y+HRIGRTGR Sbjct: 242 RSQAVREKLLNDFKSGELGLLVATGIAARGIDIDDLTRVINYDLPDQADDYVHRIGRTGR 301 Query: 339 AGRHGKAFTLVAKEDIKHIDAIE 361 AG G+A + V+++D +H+ AIE Sbjct: 302 AGATGEAISFVSRDDFRHLCAIE 324 >gi|149909603|ref|ZP_01898256.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36] gi|149807307|gb|EDM67260.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36] Length = 446 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 224/371 (60%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ +P+++ A+ Y + TP+Q + IP + D+ AQTGTGKTA+F LP+L Sbjct: 1 MKFSSYSFTPEILRALDACNYDQMTPVQQQAIPAAGRGKDILANAQTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + + R LIL PTRELAAQV DN + Y + L V + GG+ E Q K+ Sbjct: 61 QQIADTPKDIHSGSVRALILVPTRELAAQVTDNIKAYSQFMELNVVSVYGGVKMETQTKQ 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G DVL+ TPGR+L+H + N+E LV+DEADRMLDMGFI I+ I + Sbjct: 121 LKQGVDVLVATPGRLLEHLQLNHTNLANVEHLVLDEADRMLDMGFITDIRKILESISNDF 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT++ +++ ++ L +P + + +STA TI+H V + +K LL +L Sbjct: 181 QTMLFSATLSQQMKHLANELLTSPVIVSASKENSTASTIKH--VIHPVEQRRKQELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +++ K ++F N K+ N+ L+ G HG+ Q +R + L+ FKEG I+ Sbjct: 239 IGTKN-WKQVLVFVNTKEAANNIVKELKLDGIKADVCHGDKGQGARRRALTEFKEGKIRA 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ + +V N+D+P AE+YIHRIGRTGRAG G A + V +E+ + Sbjct: 298 LVATDVAARGLDVQGLKYVVNYDLPFLAEDYIHRIGRTGRAGETGNAVSFVCREEEHGLA 357 Query: 359 AIEKLIEKKVD 369 IE +I K++ Sbjct: 358 DIEAMIGYKIE 368 >gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273] gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272] gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272] gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273] Length = 481 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 224/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FADYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH T + +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella succinogenes DSM 1740] gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella succinogenes] Length = 505 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 221/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G ++ + +AG+ P+PIQ++ IPLVL HD+ AQTGTGKTA+F LP++ Sbjct: 16 FEQFGFKENLLRGIHEAGFKVPSPIQVEAIPLVLGGHDLIAQAQTGTGKTAAFGLPIIQN 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ + LI+ PTRELA Q++D K G+N + GG Q + LE+ Sbjct: 76 LKNDGS----IEALIITPTRELAVQISDEIFKLGRNCRTKTVSVYGGQAIRRQVELLEKA 131 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH +L N +V+DE+D MLDMGF+ I+ I + +P +RQTLL Sbjct: 132 PQVIIATPGRLLDHLRNDRLKNFNPTTIVLDESDEMLDMGFLDDIEEIFTYLPASRQTLL 191 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++ +++ L NPK ++V T +T I + +Y ++ A++ +L+ S+ Sbjct: 192 FSATMPAPIKNLAQKILHNPKMVKVTTNETTNSDISQRYY-IINEYEREDAIV-RLIDSE 249 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K IIF KK +L + L +G+ A+HG+++QR R ++ FK+G I ++VA+ Sbjct: 250 APSKT-IIFTRMKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQGAIDILVAT 308 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI +V HVFN+ +P E+Y+HRIGRTGRAG+ G A TL + K I I + Sbjct: 309 DVAARGLDISNVSHVFNYHIPLNPESYVHRIGRTGRAGKKGIAITLATPLEFKEIRRISE 368 Query: 363 LIEKKVDW 370 + ++ Sbjct: 369 TTKATIEL 376 >gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 518 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 217/368 (58%), Gaps = 10/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D+GLS ++ A D G+ + TPIQ KTIP+ + D+ G AQTGTGKTA+F +PM+ Sbjct: 4 FFDMGLSNFIIKATADMGFEEATPIQEKTIPVAMAGRDIIGQAQTGTGKTAAFAIPMIEN 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+ + L++ PTRELA QVA+ K G+ + + GG Q + L Sbjct: 64 LERHAEGIG---GLVVTPTRELAVQVAEEINKIGQFKGIHAQPIYGGQDINRQIRALRNR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH R + ++++ + V+DEAD ML MGFI I++I + QTLL Sbjct: 121 PQIIVGTPGRLMDHMRRHTIRLDHVSMAVLDEADEMLSMGFIEDIESILGEIQHKHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKKCALLQQLLQ 240 FSATM + +S+ F+ P+ I + T E +V ++ C LL +Q Sbjct: 181 FSATMPQSILNLSKRFMLEPEFISIKAKEVTVPNTEQYYVELPERQKFDVLCRLLD--IQ 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S D I+F K+ V L +L K+G+S IHG++ Q R +L +FKEG ++V Sbjct: 239 SPDL---AIVFGRTKRRVDELYEALNKRGYSAEGIHGDLTQLRRDSVLRHFKEGVTDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V H++NFD+P E+Y+HRIGRTGRAG+ G A T V ++ H+ I Sbjct: 296 ATDVAARGLDISGVTHIYNFDIPQDPESYVHRIGRTGRAGKTGLAVTFVTPRELNHLRLI 355 Query: 361 EKLIEKKV 368 E++ ++++ Sbjct: 356 EQVTKRRI 363 >gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum NCTC 2916] gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium botulinum A2 str. Kyoto] gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum NCTC 2916] gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A2 str. Kyoto] Length = 524 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 236/384 (61%), Gaps = 7/384 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L L+ V+ A+ G+ P+ IQ K+IP+VL+ DV AQTGTGKT +F P+++ Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + + + + L+L PTRELA Q+ D ++ K V + GG E Q K ++ Sbjct: 65 AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR+LDH NR L + I+ LV+DEAD ML+MGFI I+ I +QT+ Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++K++ N+++ + + I + S T + I + A + K L +++ Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFA--VKNKDKLEALCRIID 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ ++ IIFC K+ V L +++ +G++V +HG++ Q R+ L FK+ T+ +V Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+D+P AE+Y+HRIGRTGRA + G A++LV ++ I I Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++ + K+ +L +L LEK Sbjct: 361 ERITKSKIK--KKELPTLEDILEK 382 >gi|253568946|ref|ZP_04846356.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6] gi|251840965|gb|EES69046.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6] Length = 647 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 228/367 (62%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QID---VKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ + +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+LQN K I + + + ++H VA Q K A L++++ Sbjct: 181 LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKH--VAYTVQAKDKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Staphylococcus capitis SK14] gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus caprae C87] gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Staphylococcus capitis SK14] gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus caprae C87] Length = 511 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 150/393 (38%), Positives = 227/393 (57%), Gaps = 33/393 (8%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + V + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDRTVQTLESMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ K N+ V + GG+P E Q K L+R Sbjct: 63 KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQNVQVVTVFGGMPIERQIKALKR 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 G +++ TPGR++DH NR L N I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPSDQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F++ PK I+ + I+ + + + L+ Sbjct: 179 MLFSATMPKAIQDLVQQFMKTPKIIKTMNNEMSDPQIDEYYT------------IVKELE 226 Query: 241 SQDTMKN---------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 DT N I+F K+ V L +L +G+ +HG+I Q R+++L F Sbjct: 227 KFDTFTNFLDVHQPDLAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKF 286 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K I ++VA+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V Sbjct: 287 KNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNP 346 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 ++ +I IE + ++ +++L PP K Sbjct: 347 IEMDYIRQIEDVNGRR-------MNALRPPHRK 372 >gi|7573310|emb|CAB87628.1| DRH1 DEAD box protein-like [Arabidopsis thaliana] Length = 713 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 143/357 (40%), Positives = 219/357 (61%), Gaps = 14/357 (3%) Query: 16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PR 74 V AG+ P+PIQ ++ P+ +Q D+ IA+TG+GKT +++P L++ RM P Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 L+L PTRELA Q+ K+GK+ ++ A L GG P Q K++ERG D+++ TPGR+ Sbjct: 304 ILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLN 363 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 D ++ ++ + LV+DEADRMLDMGF P I+ I + VP RQTL+++AT E++K+ Sbjct: 364 DILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423 Query: 195 SENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248 + + L NP ++ E+ S +TIE +A ++S+ L+Q+L+SQ+ Sbjct: 424 AADLLVNPAQVNIGNVDELVANKSITQTIE--VLAPMEKHSR----LEQILRSQEPGSKI 477 Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308 IIFC+ K+ L +L + F AIHG+ Q R +L+ F+ G ++VA+D+AARG Sbjct: 478 IIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARG 536 Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 LD+ D+ V N+D PN E+Y+HRIGRTGRAG G A+T +D KH + K++E Sbjct: 537 LDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 593 >gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC 35310] gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC 35310] Length = 558 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 147/375 (39%), Positives = 232/375 (61%), Gaps = 12/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + TP+Q K IP +L+ DV G+AQTGTGKTA+++LP++ Sbjct: 1 MKFEELELNNNVLDALYDMRFDTCTPVQEKCIPEILKGRDVLGVAQTGTGKTAAYLLPIM 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 + ++ G LI+ PTRELA Q+ + +G Y L +VA+ G G ++ Sbjct: 61 SKIDSGNYPEDAINCLIMSPTRELAQQIDQAMQGFG--YYLQGVSSVAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + K L GADV+I TPGR + H + G + ++ + V+DEADRMLDMGF I I + Sbjct: 119 ELKSLRMGADVVIATPGRFISHMSLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKGL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P T QT++FSATM D++ +++ L+NP +++ S AE I+ A ++K + Sbjct: 179 PKTCQTIMFSATMPDKINELARTLLKNPVEVKLAV-SKPAEKIKQ--TAYVCHETQKLGI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++++ + D +K IIFC K+ V + +L++ + +H ++DQ R +++ FK G Sbjct: 236 IKKIFKQGD-LKRVIIFCGAKQKVKQVSQALQRMKINCGEMHSDLDQAQRDEVMFQFKSG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+ +RG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R G A TLV+K+DI Sbjct: 295 QIDVLVATDILSRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGAAITLVSKDDI 354 Query: 355 KHIDAIEKLIEKKVD 369 + IEK +EK+V+ Sbjct: 355 YYFQQIEKFLEKEVE 369 >gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266] Length = 395 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 152/409 (37%), Positives = 241/409 (58%), Gaps = 18/409 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ + + G PTPIQ + IP ++ DV AQTGTGKT +F+LP+L Sbjct: 5 FEQLGVRKDFIDKLTQEGIGAPTPIQQEAIPALMDGRDVIAQAQTGTGKTFAFLLPILQN 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + A V+ +I+ PTRELA Q+ + K K ++ V + GG Q KL+ Sbjct: 65 IRVDEASVQ---AVIVTPTRELALQITEEVRKL-KTEDMHVLAVYGGQDVAKQAHKLDGQ 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A ++I TPGR+LDH RG + + ++ +V+DEAD+ML+ GF+P +++I S P +QT+L Sbjct: 121 AHIVIATPGRMLDHLRRGTISLEAVKYMVLDEADQMLEAGFLPDVKDILSQTPEAKQTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+T ++ ++ + L++P+RI V + T E I+ T +K+ L++ + + + Sbjct: 181 FSATITTQVNQLGKKILKDPRRITVQEKTVTLEGIKQLVYET-TDRAKQDTLIEIMQEHR 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + +IFC K+ L +L GF +HG++ Q R K++ F++ IQ +VA+ Sbjct: 240 PFL--ALIFCRTKRRARKLNDALLSHGFEADELHGDLSQAKREKVMKRFRDAKIQYLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T A +D + + +IEK Sbjct: 298 DVAARGLDVEGVTHVFNYDIPQDPESYIHRIGRTGRAGGKGLAITFAAPKDRQALQSIEK 357 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 I++K++ + L++L+P EK K+ P P+K T +R++ Sbjct: 358 SIKQKIERRS--LANLSPGKEK--------ESKSEP-PKKKTKRSQRRR 395 >gi|309750350|gb|ADO80334.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2866] Length = 613 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 229/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179] gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein [Helicobacter felis ATCC 49179] Length = 469 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 224/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P+++ ++ +AG+V+P+PIQ K IP++LQ DV AQTGTGKTA+F LP++ Sbjct: 20 FKDLGLHPRILKSIAEAGFVQPSPIQEKAIPVILQGRDVIAQAQTGTGKTAAFALPIIHN 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ R+ LI+ PTRELA Q++D + GK+ + GG Q + LE+ Sbjct: 80 LKNDRS----VEALIITPTRELAMQISDEIFRLGKSSRTRTICIYGGQSIRKQCELLEKR 135 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH +L N +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 136 PQVMIATPGRLLDHLKNKRLKHFNPKVVVLDESDEMLDMGFLDDIEEIFDYLPNDAQILL 195 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++ ++ LQ+P I + + T I F ++ + A+++ LL + Sbjct: 196 FSATMPPPIRDLANKILQDPASIHIAPANITNADISQRFYVI-NEHERNEAIMR-LLDKE 253 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + K+ IIF K+ V L L ++G+ +HG+++QR+R + + FK ++VA+ Sbjct: 254 NHTKS-IIFMRMKREVDELHRFLVERGYKTTPLHGDMEQRARQESIKAFKSKRADVLVAT 312 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI DV HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 313 DVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGIAITLVTPLEYKELQRMQK 372 Query: 363 LIEKKVDW 370 I+ ++ Sbjct: 373 EIDSTIEL 380 >gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5] gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5] Length = 538 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 154/420 (36%), Positives = 243/420 (57%), Gaps = 22/420 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LG+ + V + + G +PTP+Q ++IPL+LQ DV A+TGTGKT +F+LP+L Sbjct: 13 NFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQ 72 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKKL 119 ++ RA P+ LI+ PTRELA Q+ + +K G+ + + + GG E Q +KL Sbjct: 73 HIDPKRA---YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKL 129 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E G ++I TPGR+LDH RG L + ++ LV+DEAD+ML MGF+ ++ + +P+ RQ Sbjct: 130 EGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQ 189 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQL 238 T+LFSATM +++++ N++ P I + S E I+ V SK+ AL + Sbjct: 190 TMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVEC-TDRSKQDALRAMI 248 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + IIFC K+ L +L G+ +HG++ Q R ++ F+E +QL Sbjct: 249 EEHNPFL--AIIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQL 306 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ V HVFN+D+P+ E+YIHRIGRTGRAG G A T A +D+ + Sbjct: 307 LVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGKDLNDLQ 366 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 IE+ I +++ + D ++ R+++ + TG R+ +N SS +S Sbjct: 367 RIEEGISQRLKRVRYDSAA-------------GSLRESSGSSGRDTGRPRKARNVSSLES 413 >gi|16272194|ref|NP_438403.1| ATP-dependent RNA helicase [Haemophilus influenzae Rd KW20] gi|260580884|ref|ZP_05848709.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW] gi|1169261|sp|P44586|DEAD_HAEIN RecName: Full=Cold-shock DEAD box protein A homolog; AltName: Full=ATP-dependent RNA helicase deaD homolog gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd KW20] gi|260092507|gb|EEW76445.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW] Length = 613 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 229/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|37677117|ref|NP_937513.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|37201662|dbj|BAC97483.1| DNA and RNA helicase [Vibrio vulnificus YJ016] Length = 402 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 147/362 (40%), Positives = 217/362 (59%), Gaps = 4/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL + A+ GY KPT IQ + IP++L+ D+ AQTGTGKTASFVLPML Sbjct: 5 MSFTQLGLCASLTDALDTLGYPKPTRIQTQAIPVILEGQDLIAAAQTGTGKTASFVLPML 64 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G+ + + R LIL PTRELA QV + ++YG+N L + GG+ + Q + L Sbjct: 65 EKLRHGQTQKKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKTQKQAL 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + + + IE+LV+DEADRMLDMGFI I I +P Q Sbjct: 125 IEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++++++ ++++ + NP I + ++ IE + +K ALL L+ Sbjct: 185 HLLFSATLSNKVRDLAKSAIHNPFEISIAAKQASKSNIEQWIITV--DKDQKSALLSHLI 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +IF K L LEK+G A H Q R ++L +FK G I+ + Sbjct: 243 K-ENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 V++ +AARG+DI + V N+D+P A+ Y+HRIGRTGRA G+A +LV+K++ K++ Sbjct: 302 VSTGVAARGIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCM 361 Query: 360 IE 361 IE Sbjct: 362 IE 363 >gi|79513425|ref|NP_196965.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding [Arabidopsis thaliana] gi|332004671|gb|AED92054.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana] Length = 712 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 143/357 (40%), Positives = 219/357 (61%), Gaps = 14/357 (3%) Query: 16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PR 74 V AG+ P+PIQ ++ P+ +Q D+ IA+TG+GKT +++P L++ RM P Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 L+L PTRELA Q+ K+GK+ ++ A L GG P Q K++ERG D+++ TPGR+ Sbjct: 304 ILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLN 363 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 D ++ ++ + LV+DEADRMLDMGF P I+ I + VP RQTL+++AT E++K+ Sbjct: 364 DILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423 Query: 195 SENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248 + + L NP ++ E+ S +TIE +A ++S+ L+Q+L+SQ+ Sbjct: 424 AADLLVNPAQVNIGNVDELVANKSITQTIE--VLAPMEKHSR----LEQILRSQEPGSKI 477 Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308 IIFC+ K+ L +L + F AIHG+ Q R +L+ F+ G ++VA+D+AARG Sbjct: 478 IIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARG 536 Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 LD+ D+ V N+D PN E+Y+HRIGRTGRAG G A+T +D KH + K++E Sbjct: 537 LDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 593 >gi|300865385|ref|ZP_07110194.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506] gi|300336620|emb|CBN55344.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506] Length = 480 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 147/378 (38%), Positives = 221/378 (58%), Gaps = 17/378 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LG+S + + + G+ +PTPIQ + IP +L DV G AQTGTGKTA+F LP+L Sbjct: 3 LTFESLGISEERIRHLETLGFSEPTPIQTQAIPHLLAGRDVVGQAQTGTGKTAAFSLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFE----------KYGKNYNLTVALLIGGI 110 ++ G V+ LIL PTRELA QV + K G++ L V + GG Sbjct: 63 ERIDLGVTAVQ---ALILTPTRELALQVTEAIRELSGLSEGPVKLGRS--LQVLTVYGGQ 117 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 + Q ++L RG +++ TPGRI+D NRG L ++ ++ +V+DEAD ML MGFI ++ I Sbjct: 118 SIDRQMQRLRRGVHIVVGTPGRIIDMLNRGSLKLDQLKWMVLDEADEMLSMGFIQDVEKI 177 Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230 P QT FSATM ++K+ L++P + V P +T + I C +SK Sbjct: 178 LEAAPADHQTAFFSATMEASIRKLVSKHLRSPINVTVEQPKATPKRIRQCVYMVPRGWSK 237 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 AL Q +L+ +D ++ +IF + L L+ G SV HGN++Q R ++LS Sbjct: 238 SRAL-QPILEMEDP-ESALIFVRTRAAAAELTSQLQAAGHSVDEYHGNLNQAQRERLLSR 295 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 F + ++ +VA+D+AARGLD+ D+ HV N+D+P+ E+Y+HRIGRTGRAGR G A TL+ Sbjct: 296 FHQSQVRWVVATDIAARGLDVNDLTHVINYDLPDSVESYVHRIGRTGRAGREGTAITLIQ 355 Query: 351 KEDIKHIDAIEKLIEKKV 368 D + + IE+ + + + Sbjct: 356 AVDRRKLRLIERHVRQTL 373 >gi|148827371|ref|YP_001292124.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG] gi|148718613|gb|ABQ99740.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG] Length = 613 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 229/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum] gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum] Length = 780 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 147/360 (40%), Positives = 212/360 (58%), Gaps = 2/360 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS ++ AV G+ +PTPIQ KTIPL L D+ A TG+GKTA+F+LP+L Sbjct: 184 FEELHLSRPLLKAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKTAAFLLPILER 243 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + R R L+L PTRELA Q E + N+T L++GG+ +AQ +L + Sbjct: 244 LLFRDSEYRAIRVLVLLPTRELALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVELRKR 303 Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV+I TPGR++DH N + + ++EIL++DEADR+LDMGF I I P +RQT+ Sbjct: 304 PDVVIATPGRLIDHLLNAHGIGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTSRQTM 363 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKCALLQQLLQ 240 LFSAT+ DE++ +++ LQ P R++V+ A T++ FV +Q+ S + A+L L Sbjct: 364 LFSATLNDEVKTLAKLSLQQPIRVQVDALFQVASTLDQEFVKIKSQHLSDRPAILMSLCT 423 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 IIFC KK V LC +HGN+ Q R L F++G + ++ Sbjct: 424 RVFNTGGTIIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGKVNYLL 483 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+A+RGLDI V V N+++PN YIHR+GRT RAG GK+ + + + D K + I Sbjct: 484 ASDVASRGLDIIGVKTVINYNMPNTLAQYIHRVGRTARAGMEGKSCSFITENDRKILKEI 543 >gi|145628549|ref|ZP_01784349.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21] gi|145639856|ref|ZP_01795457.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII] gi|144979019|gb|EDJ88705.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21] gi|145271074|gb|EDK10990.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII] Length = 613 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 229/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|302875685|ref|YP_003844318.1| DEAD/DEAH box helicase domain-containing protein [Clostridium cellulovorans 743B] gi|307689114|ref|ZP_07631560.1| DEAD/DEAH box helicase domain-containing protein [Clostridium cellulovorans 743B] gi|302578542|gb|ADL52554.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans 743B] Length = 472 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 149/395 (37%), Positives = 226/395 (57%), Gaps = 15/395 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F D L+ ++ ++ + PT +Q K IPL L D+ AQTG+GKTA+F +P Sbjct: 2 INFKDFNLNESMLKSLKLMNFDVPTEVQEKVIPLALSGDDIIVKAQTGSGKTAAFAIP-- 59 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+E A + L+L PTRELA QV + F G + + G P Q +L Sbjct: 60 -IIENLIANENAVQALVLTPTRELAVQVQETFSTLGVYKKIKTVAVYGKQPMSIQKNQLS 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR LDH +G L +++++ L+IDEAD ML+MGFI ++NI VP RQT Sbjct: 119 QRVHIVVGTPGRTLDHIEKGNLDISSVKYLIIDEADEMLNMGFIDEVENIIKKVPKLRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSAT++ E++++ ++ +PK IE+ + T I + + K LL+ L++ Sbjct: 179 LMFSATLSYEIKELINKYMFSPKLIELTPETLTVAKINQKYYEI--DENLKYNLLEDLIK 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D K I+FC KKNV L + +SV IHG++ Q R+ L FKE Q +V Sbjct: 237 TEDITK-AILFCRTKKNVAYLASRMRVSSYSVTEIHGDMLQNDRLSALKAFKEDKFQFIV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HVFN+D+P E Y+HRIGRTGRAG G+A T V + + K + AI Sbjct: 296 ATDVAARGIDVNNVSHVFNYDIPLELEAYVHRIGRTGRAGSSGEAITFVTRYEDKFLKAI 355 Query: 361 EKLIEKKV---------DWLNGDLSSLNPPLEKID 386 E+ I K+ + LN P + KI+ Sbjct: 356 EEFINMKIPQGIHPSKEEVLNAPKKEFKPSVAKIN 390 >gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 619 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 143/367 (38%), Positives = 223/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ A+ + GY PTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 8 FRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + +P+ L+L PTRELA QVA+ F Y K V + GG Q L+R Sbjct: 68 VTSQA----VPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L + ++ LV+DEAD ML MGFI I+ I P RQ Sbjct: 124 GPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++V+ L++ I + +T ++IE FV +Q++K AL++ +L+ Sbjct: 184 LFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQV-SQHNKLEALVR-VLEV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++T + IIF + + V L LE +G++ +HG+++Q++R + + K G + +++A Sbjct: 242 ENT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +GHV N+D+P E Y+HRIGRTGRAGR G A V +++ + IE Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360 Query: 362 KLIEKKV 368 + ++ Sbjct: 361 RATNSRI 367 >gi|296158936|ref|ZP_06841764.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] gi|295890811|gb|EFG70601.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] Length = 539 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 149/388 (38%), Positives = 228/388 (58%), Gaps = 32/388 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLS VV A+ AGY PTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 53 FASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIER 112 Query: 61 -TILEKGRA------------RVRMPR------TLILEPTRELAAQVADNFEKYGKNYN- 100 + L+K +A R R P+ L+L PTRELA QV YGK+ Sbjct: 113 FSQLQKAQAGQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 172 Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 L ++GG+ + Q L + ++L+ TPGR++DH RG++ ++ ++ILV+DEADRMLD Sbjct: 173 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 232 Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216 MGFI I+ I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ ++ A+T Sbjct: 233 MGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQT 292 Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276 + + K LL LL+ + + I+F K + L L GF A+H Sbjct: 293 VHYV-----DDRDHKDRLLDHLLRDEG-LDQAIVFTATKMDADQLAGRLADAGFESAALH 346 Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336 G++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGRT Sbjct: 347 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 406 Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 GRAGR G A +LV + + IE+ + Sbjct: 407 GRAGRSGIAVSLVHHAEQGALKRIERFV 434 >gi|163755350|ref|ZP_02162470.1| putative RNA helicase dead-box protein [Kordia algicida OT-1] gi|161324770|gb|EDP96099.1| putative RNA helicase dead-box protein [Kordia algicida OT-1] Length = 591 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 224/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LGL ++ A+ D G+ P+ +Q K IP++L + D+ +AQTGTGKTA+F P++ Sbjct: 4 FEELGLQDSLLRAIQDMGFETPSEVQEKAIPILLNEETDIVALAQTGTGKTAAFGFPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +K A R + LIL PTREL Q+ + + Y K N+ V + GG Q +++++ Sbjct: 63 --QKINADSRTTQGLILSPTRELCLQITNELKNYSKYENINVVAIYGGASITDQARQVKK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ D NR + ++ IE V+DEAD ML+MGF I +I S P + T Sbjct: 121 GAQIVVATPGRMQDMINRRMVDISKIEYCVLDEADEMLNMGFYEDITSILSHTPDDKSTW 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E+ +++ F+ P+ I V + +S ++++ H F YA + L + L Sbjct: 181 LFSATMPREVATIAKKFMHTPQEITVGSRNSGSDSVRHEF---YAVSGRDRYLALKRLAD 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++FC K++ N+ L + G++ AIHG++ Q R ++ +F+ IQ++VA Sbjct: 238 ANPDIFSVVFCRTKRDTQNVAEKLIEDGYNAAAIHGDLSQNQRDLVMKSFRTRQIQMLVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ D+ HV N+ +P+ E Y HR GRTGRAG++G + +V K +++ I +IE Sbjct: 298 TDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKNGVSMVIVTKSEMRKIKSIE 357 Query: 362 KLIEKKVD 369 + I+KK + Sbjct: 358 RKIQKKFE 365 >gi|229170156|ref|ZP_04297843.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621] gi|228613301|gb|EEK70439.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621] Length = 481 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 225/362 (62%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH T + +K +LL+ + ++ Sbjct: 183 FSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREE--EKLSLLKDVTTTE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG +GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|289550302|ref|YP_003471206.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01] gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus lugdunensis M23590] gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01] gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus lugdunensis M23590] Length = 504 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 146/394 (37%), Positives = 228/394 (57%), Gaps = 35/394 (8%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F DLG+S K V + + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKDLGISEKTVQTLENMGFKEPTPIQKDSIPYALEGRDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ K + +LIL PTRELA QVA+ ++ + N+ V + GG+P + Q K L+ Sbjct: 63 KVVNKSGVQ-----SLILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179 +G +++ TPGR++DH NR L N I L++DEAD M++MGFI ++ I +P RQ Sbjct: 118 KGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM +Q + + F++ P+ ++ + I+ + + + L Sbjct: 178 TMLFSATMPKAIQALVQQFMKTPQIVKTMNNEMSDPQIDEYYT------------IVKEL 225 Query: 240 QSQDTMKN---------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 + DT N I+F K+ V L +L +G+ +HG+I Q R+++L Sbjct: 226 EKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKK 285 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK I ++VA+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V Sbjct: 286 FKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVN 345 Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 ++ +I IE++ ++ +++L PP K Sbjct: 346 PIEMDYIRQIEEVNSRR-------MTALRPPHRK 372 >gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309] gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309] Length = 502 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 217/370 (58%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G++ +V A+ D G P PIQ T+ L+RHD+ G A+TGTGKT F +P+L Sbjct: 65 FADFGVTDPIVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVLED 124 Query: 63 L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E+G + P+ LI+ PTREL QVA + + K + + + GG+ FE Q Sbjct: 125 VIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQ 184 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + LERGAD+++ TPGR++D +G L ++ +E +V+DEAD MLD+GF+P ++ + S VP Sbjct: 185 IEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVP 244 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ F+ P I P +T+ Y ++ K + Sbjct: 245 ENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEV 304 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + +IFC K+ L L +GF+V ++HG++ Q +R + L F+ G Sbjct: 305 VARILQAEGRGRT-VIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNG 363 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ P + YIHRIGRTGRAG G A T V +D Sbjct: 364 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 423 Query: 355 KHIDAIEKLI 364 I K + Sbjct: 424 PRWSLISKAL 433 >gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Bf] gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Bf] Length = 524 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 143/384 (37%), Positives = 236/384 (61%), Gaps = 7/384 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L L+ V+ A+ G+ P+ IQ K+IP+VL+ DV AQTGTGKT +F P+++ Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + + + + L+L PTRELA Q+ D ++ K V + GG E Q K ++ Sbjct: 65 AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR+LDH NR L + I+ L++DEAD ML+MGFI I+ I +QT+ Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++K++ N+++ + + I + S T + I + A + K L +++ Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAV--KNKDKLEALCRIID 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ ++ IIFC K+ V L +++ +G++V +HG++ Q R+ L FK+ T+ +V Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+D+P AE+Y+HRIGRTGRA + G A++LV ++ I I Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++ + K+ +L +L LEK Sbjct: 361 ERITKSKIK--KKELPTLEDILEK 382 >gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18] gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1] Length = 462 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR+ D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++ + IEV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L++ ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIP + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDIPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|156973083|ref|YP_001443990.1| ATP-dependent RNA helicase DbpA [Vibrio harveyi ATCC BAA-1116] gi|156524677|gb|ABU69763.1| hypothetical protein VIBHAR_00762 [Vibrio harveyi ATCC BAA-1116] Length = 459 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 224/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +GL+P ++ + Y TPIQ ++P +L + DV G +TG+GKTA+F L +L+ Sbjct: 6 FDQVGLNPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH +G++ + + LV+DEADRML+MGF + I P RQTL Sbjct: 123 GAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPKQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++++++ +Q+P+ I+V + T+ +I F ++ AL LL Sbjct: 183 LFSATFPEKIEQIAQRIMQSPEMIKVESTHDTS-SIAQYFYNVEGSEARDEALANLLLTH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L F ++ ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++D + IE Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359 Query: 362 KLIEKKV 368 + +E V Sbjct: 360 EYLEMDV 366 >gi|240128393|ref|ZP_04741054.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 462 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR+ D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++ + IEV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L++ ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|242399022|ref|YP_002994446.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM 739] gi|242265415|gb|ACS90097.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM 739] Length = 382 Score = 272 bits (695), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 225/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 M F LGLS + AV G+ KPT IQ + IP +L+ +D+ G +QTGTGKTA+F LP+ Sbjct: 1 MSFEKLGLSENSLNAVRRKGFEKPTDIQKEVIPRLLRGDNDIIGQSQTGTGKTAAFALPL 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++++ ++ + +++ PTRELA QVAD + V + GG P Q + L Sbjct: 61 IELIDE---EIKEVQAIVITPTRELAIQVADEIRSLRGKRRINVLPVYGGQPIGPQIRNL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG +++ TPGR++DH RG L ++ + ++DEADRMLDMGFI I+ I ++ Sbjct: 118 RRGVHIVVGTPGRVIDHIERGTLSLDGVSYFILDEADRMLDMGFIEDIERILRHTSEEKR 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSAT+ E+ +++ +L++ + I + S E +E + + +K+ +LL +L Sbjct: 178 VLMFSATIPREILRLARRYLKDYEVIRIQDRSLAPELVEQIYFEV--RPNKRFSLLCSIL 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +D GI+FC K+ L L+ +G+SV A++G+I Q+ R +IL F++G I+++ Sbjct: 236 DEKDFY--GIVFCQTKRETRELASKLKTKGYSVEALNGDIPQKGRERILERFRKGKIRVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ D+ HV N+ +P E Y+HRIGRTGR G+ GKA T VA + + Sbjct: 294 VATDVAARGIDVKDLTHVINYSIPQNPEAYVHRIGRTGREGKRGKAITFVAPWESPKLRD 353 Query: 360 IEKLIEKKV 368 IE++ K+ Sbjct: 354 IERVARVKI 362 >gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 542 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 139/349 (39%), Positives = 211/349 (60%), Gaps = 7/349 (2%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74 A+ D GY PT IQ TIP ++ DV G+AQTGTGKTA+F +P+L+ ++ + Sbjct: 3 AIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSNIDVASTATQ--- 59 Query: 75 TLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 L+L PTRELA QVA+ F +YG + + V + GG + Q L+RGA V++ TPGR+ Sbjct: 60 ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAHVVVGTPGRV 119 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193 +DH RG L +++++ LV+DEAD ML MGF + I S P +Q LFSATM ++K Sbjct: 120 IDHLERGTLNLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPAIRK 179 Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253 ++ +L +P + ++TAE I ++ +K L ++L+ + + I+F Sbjct: 180 LTAKYLHDPLEVSTKAKTTTAENISQRYIQVAG--PRKMDALTRVLEVE-PFEAMIVFVR 236 Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313 K+ + L +GFS AI+G+I Q R + ++ K+G I ++VA+D+AARGLD+ Sbjct: 237 TKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGLDVER 296 Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 + HV N+D+P+ E+Y+HRIGRTGRAGR G A V+ + + AIEK Sbjct: 297 ISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIEK 345 >gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140] Length = 462 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR+ D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++ + IEV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L++ ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662] gi|167652390|gb|EDR96519.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662] Length = 466 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 229/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L ++ K++ AV + G+ +PIQ IP+VL+ D+ G AQTGTGKTA+F +P+L Sbjct: 15 FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLL-- 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 EK +V+ P+ +IL PTRELA QVAD K K + V + GG Q + L+ Sbjct: 73 -EKMDTKVKKPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLKT 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA++++ TPGRI+DH R L + +++++V+DEAD ML+MGF I++I VP RQTL Sbjct: 132 GANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTL 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ + ++ K I+V T IE + + +K +L +LL Sbjct: 192 LFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPK--QKVEVLCRLLDM 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K I+FCN K+ V + L+ +G+ IHG++ Q R +++ +F+ G + ++VA Sbjct: 250 H-SPKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G AFT VA ++I + ++ Sbjct: 309 TDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQ 368 Query: 362 KLIEKKV 368 + + K+ Sbjct: 369 RYCKTKI 375 >gi|291447570|ref|ZP_06586960.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998] gi|291350517|gb|EFE77421.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998] Length = 458 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 147/376 (39%), Positives = 222/376 (59%), Gaps = 12/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F DLG+ P+ A+ G P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 4 FRDLGIFPETAEALEAVGITSPFPIQELTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 63 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRA+ P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 64 VTVPADVEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 123 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL +++I LV+DEAD MLD+GF+P ++ I + Sbjct: 124 EPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVERIIT 183 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231 ++P RQT+LFSATM + ++ ++ P I +P T+++ Y A K Sbjct: 184 MLPAKRQTMLFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTVQHVYRAHNMDK 243 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 +L ++LQ+ D +IFC K+ ++ LEK+GF+ A+HG++ Q +R + L F Sbjct: 244 PEMLARILQA-DGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAF 302 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TLV Sbjct: 303 RNGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITLVDW 362 Query: 352 EDIKHIDAIEKLIEKK 367 +DI I K ++ K Sbjct: 363 DDIPRWQLINKALDLK 378 >gi|170754257|ref|YP_001782408.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str. Okra] gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum B1 str. Okra] Length = 524 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 235/384 (61%), Gaps = 7/384 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L L+ V+ A+ G+ P+ IQ K+IP+VL+ DV AQTGTGKT +F P+++ Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + + + L+L PTRELA Q+ D ++ K V + GG E Q K ++ Sbjct: 65 ALCDNEKK-KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGRILDH NR L + I+ L++DEAD ML+MGFI I+ I +QT+ Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++K++ N+++ + + I + S T + I + A + K + +++ Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFA--VKNKDKLEAICRIID 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ ++ IIFC K+ V L +++ +G++V +HG++ Q R+ L FK+ T+ +V Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+D+P AE+Y+HRIGRTGRA + G A++LV ++ I I Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++I+ K+ +L +L LEK Sbjct: 361 ERIIKSKI--TKKELPTLEDILEK 382 >gi|82523824|emb|CAI78566.1| hypothetical protein [uncultured candidate division OP8 bacterium] Length = 453 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 217/373 (58%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P ++ A+ + G+ +PTPIQ IP + DV A TG+GKTA+F+LP+L Sbjct: 1 MPFSSLHLHPTLLKALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++++ R R L++ PTRELAAQ+ ++ + ++ A + GG+ Q Sbjct: 61 HQLIDRPRGTTR---ALVITPTRELAAQILEDLNDLAVHTPISAAAVFGGVSIRPQEHAF 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DVLI TPGR+LDHF + +E LV+DEADRMLDMGF+P I+ I +P RQ Sbjct: 118 RRGVDVLIGTPGRLLDHFRAPYAKLAGLEHLVLDEADRMLDMGFLPDIRRILKHIPARRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSATM + ++ L+NP + +N ++ A I A Y + A L L Sbjct: 178 TLFFSATMPAPIGVLAREMLRNPATVNINRIAAPAAGITQ---AVYPVAQELKAALLVAL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +D +++ ++F K L L +QG IHGN Q R + L+ FK G +++ Sbjct: 235 LKRDDIRDALVFTRTKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAGKYRVL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ ++GHV NFDVP ++YIHR+GRT RA G AFT V+ ++ + Sbjct: 295 VATDIAARGIDVTELGHVVNFDVPLVPDDYIHRVGRTARAEATGDAFTFVSPQEQGDLTR 354 Query: 360 IEKLIEKKVDWLN 372 IE++I K++ + Sbjct: 355 IERVIGKQLPRIT 367 >gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 408 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 149/361 (41%), Positives = 218/361 (60%), Gaps = 10/361 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F ++GL + A+ PTPIQ++ IPL LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFHEMGLPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVA 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 L + + L++ PTRELA QV K ++ L VALLIGG P Q +L+ Sbjct: 63 KLMNEPS---IGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQ 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++I TPGRI+DH R L+ N+ ILV+DE DRM DMGF I+ I +P RQT Sbjct: 120 KKPQIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLL 239 L+FSAT+ E+ K++E +L P+R+ V+ ++T+ I+ V YA S+K L+ QL Sbjct: 180 LMFSATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVV--YASESEKYGKLVTQLC 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++ IIF K+ L L K +S AIHG++ Q R +++ +F+ G Q+M Sbjct: 238 QRKGSI---IIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIM 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDIP + HV N+DVP +Y+HRIGRT RAG G A + V +D + + A Sbjct: 295 VATDVASRGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRRLPA 354 Query: 360 I 360 + Sbjct: 355 L 355 >gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase domain protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 501 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 145/406 (35%), Positives = 230/406 (56%), Gaps = 8/406 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FADLG++P +V A+ G P PIQ IP+ L D+ G A+TGTGKT +F +P+L Sbjct: 18 FADLGVAPSIVTALDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIPILQK 77 Query: 61 TILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L+ ++ P+ L++ PTRELA QV + G++ + V + GG+ ++ Q Sbjct: 78 VVLKTDEGFDQLDPKDKPQALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYDDQ 137 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L++G DV++ TPGR+LD +RG L ++++ I V+DEAD MLD+GF+P +Q + P Sbjct: 138 LDALKKGVDVVVGTPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLPDVQALLDRTP 197 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +RQT++FSATM + ++ + L P I + A + A K ++ Sbjct: 198 ASRQTMMFSATMPAVIMSLARSRLNQPVNIRAEGRDAQATVPQTTQFIYQAHELDKPEMI 257 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++LQS+ M+ ++F K+ L L +GF ++HG+++Q R K + F+ Sbjct: 258 GKMLQSE-GMRKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRNDK 316 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 IQ++VA+D+AARG+D+ DV HV N++VP+ E Y+HRIGRTGRAG G A TLV +D+ Sbjct: 317 IQVLVATDVAARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHEGVAVTLVDWQDVT 376 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 I K ++ + S+ LE + IA R + P+ Sbjct: 377 RWKVINKALDLPFPEIEATFSTTPQFLEDLHIAPDTKGRLADAKPR 422 >gi|127511273|ref|YP_001092470.1| ATP-dependent RNA helicase RhlB [Shewanella loihica PV-4] gi|189040043|sp|A3Q9R3|RHLB_SHELP RecName: Full=ATP-dependent RNA helicase rhlB gi|126636568|gb|ABO22211.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 435 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 152/414 (36%), Positives = 251/414 (60%), Gaps = 23/414 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L P++ A++++G+ TPIQ ++P++L+ D+ G AQTGTGKT +F++ Sbjct: 11 FADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T + GR ++ PR +++ PTRELA Q+A + E K+ L V ++ GG +E Q K Sbjct: 71 LLTTPIPDGR-QLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYGGESYEVQRK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+LI T GRI+D+ +G + ++ I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 R +LFSAT++ ++Q+++ + + +P+++E+ T++ I E F Y K L Sbjct: 190 NERLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIF---YPSMEDKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ +D + I+F N K + NL LE G V + G++ Q+ R++IL F +G Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILEQFTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG+ G + + +E Sbjct: 306 ELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHARKNNPIPQKSTG 405 ++ AIE I+ + N D +L PP +I RK++P P +G Sbjct: 366 LNLPAIEHYIQHSIPVTNYDSEALLDDIPPPVRIH-------RKHSPRPTGRSG 412 >gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase domain-containing protein [Isosphaera pallida ATCC 43644] gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC 43644] Length = 422 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 225/369 (60%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS + A+ Y P+PIQ IP L+ DV G A+TGTGKTA+F LP++ + Sbjct: 15 FAELGLSRLTLAALKTVNYRVPSPIQAAFIPPALEGRDVIGQAKTGTGKTAAFSLPLIEM 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E G+ P+ +IL PTREL Q+ FE+ + +L V + GG P E Q + L +G Sbjct: 75 HEPGQP---GPQAIILAPTRELVQQICGEFERLARGRDLVVRGIYGGEPIERQLRSLAKG 131 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR++DH RG + + + +V+DEADRMLD+GF P I+ I VP QTLL Sbjct: 132 VDVVVGTPGRVIDHLQRGTMSLEGVYHVVLDEADRMLDIGFRPDIERILRKVPQPHQTLL 191 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SAT++ E+++++ ++ P + ++ + E I ++ +++K LL LL+ + Sbjct: 192 LSATLSPEVRRLAARYMHEPVELNLSRDEPSVEKIVQKYIPV--DHNRKMELLLHLLELE 249 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+FC K+ L L ++ V IHG++ Q +R +++ F++G+I ++VA+ Sbjct: 250 KP-RQCIVFCRTKRGADKLAQRLARRYPGVATIHGDLPQTARNRVMRGFRDGSIPILVAT 308 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+ RG+D+ ++ HV N+D+P+ ENY+HRIGRTGR G+ G A+T V ++ + IE Sbjct: 309 DVVGRGIDVEEISHVVNYDIPDDPENYLHRIGRTGRMGKDGVAYTFVGPDEGIPLTNIEV 368 Query: 363 LIEKKVDWL 371 LI K ++ + Sbjct: 369 LINKTLERV 377 >gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA] gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA] Length = 528 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 229/367 (62%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L ++ K++ AV + G+ +PIQ IP+VL+ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 EK +V+ P+ +IL PTRELA QVAD K K + V + GG Q + L+ Sbjct: 64 -EKMDTKVKRPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLKT 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA++++ TPGRI+DH R L + +++++V+DEAD ML+MGF I++I VP RQTL Sbjct: 123 GANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ + ++ K I+V T IE + + +K +L +LL Sbjct: 183 LFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPK--QKVEVLCRLLDM 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K I+FCN K+ V + L+ +G+ IHG++ Q R +++ +F+ G + ++VA Sbjct: 241 H-SPKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G AFT VA ++I + ++ Sbjct: 300 TDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQ 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RYCKTKI 366 >gi|45358020|ref|NP_987577.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus maripaludis S2] gi|44920777|emb|CAF30013.1| Probable ATP dependent RNA helicase [Methanococcus maripaludis S2] Length = 538 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 226/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LGLS +++ A+ G+ PTPIQ + IP++++ + D+ G AQTGTGKTA+F +P+L Sbjct: 4 FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ R + LIL PTRELA QVA+ + + L V + GG + Q ++L R Sbjct: 64 TIDE---HSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGRILDH +R + + N+ +V+DEAD ML+MGFI ++ I V ++ L Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRML 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ D + K+++N+++ I+V T + F +++ K LL +++ + Sbjct: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSR--DKFELLSRIIDT 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + G+IFC K +V + + L ++G++ +HG++ Q R K L FK I ++VA Sbjct: 239 EKEF-YGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI D+ HV NFD+P E+Y+HRIGRTGRAG+ G A T V + + I+ Sbjct: 298 TDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQ 357 Query: 362 KLIEKKV 368 K+ + ++ Sbjct: 358 KIAKTEI 364 >gi|327479736|gb|AEA83046.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri DSM 4166] Length = 476 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +T Sbjct: 90 FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQ 149 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LE + R PR LI+ PTREL Q+A++ K L V +GG+ F+ Q K+ Sbjct: 150 LLETPPPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 209 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 210 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 269 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + NP +E+ + ++T+E A S K LL Sbjct: 270 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAG--SDKYKLL 327 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ ++F N+K V + L K G S + G++ Q R++ L F+EG Sbjct: 328 YNLI-TQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 386 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ + + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 387 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAF 446 Query: 356 HIDAIEKLIEKKV 368 + IE LI +K+ Sbjct: 447 ALPPIEALIGRKI 459 >gi|271969585|ref|YP_003343781.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021] gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021] Length = 697 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 2/359 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG++P++ A+ G + P PIQ +PL L D+ G A+TGTGKT +F + ML Sbjct: 41 FRDLGVTPEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAMLQR 100 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + K R + PR L++ PTRELA QV ++ + + GG +E Q + L++G Sbjct: 101 VGKPRKNRKKPRGLVVVPTRELAVQVTEDLVTAAGKLGSRILTVYGGRAYEPQVEALKQG 160 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR+LD + L + I++LV+DEADRMLD+GF+P I+ I L+P RQT+L Sbjct: 161 VDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKRQTML 220 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSAT+ E+ +S +L P + + AE + A K ++ +LLQ Sbjct: 221 FSATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIVGRLLQC 280 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D +IFC K+ + L+++GF+ A+HG++ Q R + L F+ G I ++VA Sbjct: 281 -DGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVA 339 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+D+ DV HV N+D P + Y+HRIGRTGRAG+ G A T V ED+ I Sbjct: 340 TDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTRWKVI 398 >gi|187924463|ref|YP_001896105.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN] gi|187715657|gb|ACD16881.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans PsJN] Length = 542 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 149/388 (38%), Positives = 228/388 (58%), Gaps = 32/388 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLS VV A+ AGY PTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 50 FASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIER 109 Query: 61 -TILEKGRA------------RVRMPR------TLILEPTRELAAQVADNFEKYGKNY-N 100 + L+K +A R R P+ L+L PTRELA QV YGK+ Sbjct: 110 FSQLQKAQASQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 169 Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 L ++GG+ + Q L + ++L+ TPGR++DH RG++ ++ ++ILV+DEADRMLD Sbjct: 170 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 229 Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216 MGFI I+ I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ ++ A+T Sbjct: 230 MGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQT 289 Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276 + + K LL LL+ + + I+F K + L L GF A+H Sbjct: 290 VHYV-----DDRDHKDRLLDHLLRDEG-LDQAIVFTATKMDADQLAGRLADAGFESAALH 343 Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336 G++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGRT Sbjct: 344 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 403 Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 GRAGR G A +LV + + IE+ + Sbjct: 404 GRAGRSGIAVSLVHHAEQGALKRIERFV 431 >gi|118602908|ref|YP_904123.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567847|gb|ABL02652.1| ATP-dependent RNA helicase CsdA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 606 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 156/370 (42%), Positives = 229/370 (61%), Gaps = 12/370 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F LGLS + VLDA GY P+PIQ + I +L D+ G AQTGTGKTA+F LP+L Sbjct: 14 FKCLGLS-NTILKVLDAIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFSLPLLD 72 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ G + MP+ LIL PTRELA QV++ + Y + V + GG ++ Q + L+ Sbjct: 73 KIDLG---INMPQLLILTPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLK 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG ++ TPGR++DH +G L +++++ V+DEAD ML MGFI I+ I +P RQ Sbjct: 130 RGVHAIVGTPGRVMDHIKKGTLKLDHLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQI 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQL 238 LFSATM ++KV+E FL PK +++ T + TA TI ++C V +Q K L ++ Sbjct: 190 ALFSATMPSVIKKVAEQFLNQPKIVKIKTKTETATTITQKYCMVGGLSQ---KLEALTRI 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ T IIF K L L +GFS AI+G+I Q R +I++N+K+G I + Sbjct: 247 LEVT-TFDAMIIFVRTKTLTTELAEKLSARGFSAEAINGDIQQNQRERIITNYKKGKIDI 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARGLD+ + HV N+D+P AE+Y+HRIGRTGRAGR G A V+ + + ++ Sbjct: 306 LIATDVAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGDAILFVSNRERRMLN 365 Query: 359 AIEKLIEKKV 368 IE + +K+ Sbjct: 366 TIEHITRQKI 375 >gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M] gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2] gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2] gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M] Length = 464 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 151/392 (38%), Positives = 225/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P ++ + GYV TPIQ ++P+ L HD+ A+TG+GKTA+F L +L+ Sbjct: 9 FSALPLTPAMLANLEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ +IL PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LDARRFDVQ---AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T + +L + Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLNHYRP 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 246 VST----IAFCNTKQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIE 361 Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387 + ++ V+W + L PP+E + I Sbjct: 362 QAQKRDVEWRPLSELTPASDAPLLPPMETLQI 393 >gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM 22836] Length = 374 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 149/374 (39%), Positives = 226/374 (60%), Gaps = 5/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + ++ A+ + GY PTPIQ K I L D+ G+AQTGTGKTA+F LP++ Sbjct: 1 MTFNELNIIEPILKALEEKGYTTPTPIQEKAIIPALTNRDILGLAQTGTGKTAAFSLPII 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K + R R LIL PTRELA Q+ D+ Y + L ++ GG+ +AQ + Sbjct: 61 QQLYLNKVSGKRREIRALILTPTRELAIQINDSLNDYTQYTGLRHCVIYGGVKQKAQTDE 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+L+ TPGR+LD N+G + +++I V+DEADRMLDMGFI I+ + +P + Sbjct: 121 LKTGIDILVATPGRLLDLINQGFINLDSIRHFVLDEADRMLDMGFIHDIKRLLPKLPKEK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM + +S + L++P ++EV SS +TI+ + + +K LL L Sbjct: 181 QTLFFSATMPSTIASLSRSILRDPLKVEVTPASSVIDTIKQYLY--FVEKQEKKDLLINL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D ++ ++F K + L K G AIHGN Q +R + L+NFK ++ Sbjct: 239 LK-KDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALTNFKSQKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ + V N+D+P+ E Y+HRIGRTGRAG G A T + E+ ++ Sbjct: 298 LIATDIAARGIDVDQLELVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSAEENAMLN 357 Query: 359 AIEKLIEKKVDWLN 372 I+KL KK++ L+ Sbjct: 358 DIQKLTGKKLNQLS 371 >gi|71281612|ref|YP_268332.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H] gi|71147352|gb|AAZ27825.1| ATP-dependent RNA helicase, DEAD box family [Colwellia psychrerythraea 34H] Length = 455 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 147/388 (37%), Positives = 227/388 (58%), Gaps = 22/388 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M +GLS ++ AV GY TPIQ + IP++ Q D+ AQTGTGKTA+F LP+L Sbjct: 1 MSVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60 Query: 61 TILEKG-------------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL 101 + K A + R LIL PTRELA QVADN +++ + + Sbjct: 61 DAIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPI 120 Query: 102 TVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161 ++ GG +Q K L++G DVL+ TPGR+L+H + ++ ++ LV+DEADRMLDM Sbjct: 121 KSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDM 180 Query: 162 GFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221 GF+ I+ + V QTL+FSAT +D ++ ++ L++PK I V+ ++T+ I+ Sbjct: 181 GFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAV 240 Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 + +K LL +L+ + + ++F K++ L L+ G HG+ Q Sbjct: 241 Y--WVTEERKRELLSELI-GVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQ 297 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 +R K L F EG ++++VA+D+AARGLDIPD+ V NF +P E+Y+HR+GRTGRAG+ Sbjct: 298 GARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGK 357 Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 G A +LV+ +D + ++ IE+LIE+K + Sbjct: 358 SGTAISLVSPKDERFLENIEQLIERKFE 385 >gi|240115845|ref|ZP_04729907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18] gi|260440339|ref|ZP_05794155.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2] gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 462 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR+ D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++ + IEV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L++ ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|59801077|ref|YP_207789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090] gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae NCCP11945] gi|239999112|ref|ZP_04719036.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02] gi|240113089|ref|ZP_04727579.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11] gi|240125882|ref|ZP_04738768.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679] gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62] gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090] gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae NCCP11945] gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62] gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae TCDC-NG08107] Length = 462 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR+ D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++ + IEV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L++ ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552] gi|169293913|gb|EDS76046.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552] Length = 531 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 233/373 (62%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS +V+ A+ D G+ KP+ IQ K IP++L D G AQTGTGKT +F +L+ Sbjct: 6 FEQLGLSEEVLKAIKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAFGSVLLSK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ R P+ +IL PTRELA Q+ + + GK+ + + GG E Q + +++G Sbjct: 66 IKP--IDDRFPQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSIKKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR++D R L +N++ +V+DEAD ML+MGF+ I+ I V RQT+L Sbjct: 124 VDIVVGTPGRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDARQTIL 183 Query: 183 FSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM ++K+++N++ + K + V + +TA +++ + V ++ C L+ Sbjct: 184 FSATMPAGIKKIAQNYMHDDFKHVAVLSKQTTATSVKQFYYEVKPKDRFETLCRLIDVA- 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +K GIIFC K++V + +++ ++V A+HG+++Q RM L FK+GTI + Sbjct: 243 ----NIKTGIIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V HV N+++P E+Y+HRIGRTGRA + G A+++++ +++ + Sbjct: 299 VATDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGLAYSIISPKEVSFLKQ 358 Query: 360 IEKLIEKKVDWLN 372 IE++ + + +N Sbjct: 359 IERVTKSTITKVN 371 >gi|116515159|ref|YP_802788.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257013|gb|ABJ90695.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 576 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 222/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ GL+ ++ ++ GY KP+PIQ IP +L DV G+AQTG+GKTA+F LP+L Sbjct: 6 LSFSVFGLNSFLLKSLKILGYEKPSPIQSACIPYLLSGKDVLGMAQTGSGKTAAFALPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKL 119 + ++ P+ L+L PTRELA QVA +F + K T L L GG +E Q L Sbjct: 66 NNIN---ISLKFPQILVLVPTRELAVQVAKSFSDFSKYLIGTQVLALYGGQRYEIQLHAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG +++ TPGR+LDH RG L + ++ LV+DEAD ML MGFI ++ I S +P Q Sbjct: 123 RRGPQIIVGTPGRLLDHLKRGTLSLIHLSSLVLDEADEMLRMGFIEDVETIMSKIPRKHQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + ++++S F+ PK I++ + T I+ + + +K L + L Sbjct: 183 TALFSATMPNIIRRISRRFMNTPKEIKIQSTGITRPDIQQSY---WIVRGRKTDALIRFL 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D IIF K + + +LEK G++ A++G+++Q R + L K G + ++ Sbjct: 240 EVED-FSATIIFVRTKNATLEVSEALEKNGYNSAALNGDMNQVLREQTLERLKNGKLDIL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + Sbjct: 299 IATDVAARGLDVDRISFVINYDIPTDAESYVHRIGRTGRAGRTGRALLFVEYREYRLLKN 358 Query: 360 IEKLIEKKV 368 IE++I+ + Sbjct: 359 IERIIKHPI 367 >gi|326203304|ref|ZP_08193169.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] gi|325986562|gb|EGD47393.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] Length = 542 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 144/362 (39%), Positives = 212/362 (58%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+S ++ A+ D G+ PT +Q K IP +L D+ +++TG+GKTA F + ML + Sbjct: 5 FNDLGVSAPLLKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSMLQM 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + P LIL P RELA QV + K K + G + + L++G Sbjct: 65 TD---PEAEGPLGLILTPARELAVQVDSDIHKMAKYLKHKTTAVYGQHNINVETQTLKKG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++ TPGR+ DH + G L+ NI LV+DEADRMLDMGF+ + I +P R TLL Sbjct: 122 VSIVTGTPGRVFDHISHGSLVTKNIRFLVLDEADRMLDMGFLDQVVRIIKTLPKDRITLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ + ++QNP IE+ + + T +TI + Y++K L +LL + Sbjct: 182 FSATMPPEIHNICSRYMQNPTTIEIESQTKTVDTIHQVYY--RVNYNEKNTQLNRLLIVE 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ +IFCN K V + L K+G+S A+HG+I Q R+ + FK+G ++VA+ Sbjct: 240 KP-ESCMIFCNTKAAVDRVQSFLTKKGYSSQALHGDIPQSKRLNTIQQFKQGKFHILVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+ I + V N+DVPN +NY+HRIGRTGRAG G+AF+LV +DI + IE+ Sbjct: 299 DVAARGIHIEGLSLVINYDVPNDKDNYVHRIGRTGRAGHDGRAFSLVTGDDIISLYEIEE 358 Query: 363 LI 364 I Sbjct: 359 HI 360 >gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] Length = 463 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 149/381 (39%), Positives = 230/381 (60%), Gaps = 17/381 (4%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ +PTPIQ + IP+ ++ D+ G AQTGTGKT +F +P+L ++ + L+L Sbjct: 2 GFEEPTPIQAQAIPIGMKGKDMIGQAQTGTGKTTAFGVPLLEQIDLNEG----IQGLVLA 57 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QVA+ + G+ + + GG Q + L++ ++ TPGR++DH R Sbjct: 58 PTRELAVQVAEELNRIGQVKGVRTLPVYGGQDITRQIRALKKHPHIIAATPGRLIDHIER 117 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 + ++NI+++V+DEAD ML+MGFI I+ I S + RQTLLFSATM +Q ++E F+ Sbjct: 118 KTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQTLLFSATMPKRIQSLAEKFM 177 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 Q P+ ++V T + IE ++ + + +K +L LL Q + + I+F KK V Sbjct: 178 QEPEMVKVKAKEMTVKNIEQYYMEVHEK--QKFDVLCNLLDIQ-SPELAIVFGRTKKRVD 234 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 + L K+G+S IHG+I Q R +++ FKE TI +MVA+D+AARGLDI V HV+N Sbjct: 235 EVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMVATDVAARGLDISGVSHVYN 294 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV---------DW 370 FD+P E+Y+HRIGRTGRAG G A T V+ +I H+ IE + + K+ D Sbjct: 295 FDIPQDPESYVHRIGRTGRAGNKGLAITFVSPREIDHLKIIESVTKSKMAKKPVPSFKDV 354 Query: 371 LNGD-LSSLNPPLEKIDIAQH 390 + G+ +++N +E I+ +H Sbjct: 355 VAGNQQATINKLMEVIEKEEH 375 >gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. ATCC 3502] gi|153932415|ref|YP_001385046.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str. ATCC 19397] gi|153936759|ref|YP_001388516.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str. Hall] gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein) [Clostridium botulinum A str. ATCC 3502] gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. ATCC 19397] gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. Hall] Length = 524 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 236/384 (61%), Gaps = 7/384 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L L+ V+ A+ G+ P+ IQ K+IP+VL+ DV AQTGTGKT +F P+++ Sbjct: 5 NFENLNLNEDVLKAIQYMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + + + + L+L PTRELA Q+ D ++ K V + GG E Q K ++ Sbjct: 65 AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGRILDH NR L + I+ L++DEAD ML+MGFI I+ I +QT+ Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++K++ N+++ + + I + S T + I + A + K + +++ Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFA--VKNKDKLEAICRIID 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ ++ IIFC K+ V L +++ +G++V +HG++ Q R+ L FK+ T+ +V Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+D+P AE+Y+HRIGRTGRA + G A++LV ++ I I Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++I+ K+ +L +L LEK Sbjct: 361 ERIIKSKI--TKKELPTLEDILEK 382 >gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239] gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239] Length = 523 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 145/405 (35%), Positives = 228/405 (56%), Gaps = 19/405 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D G+ P++V A+ D G + P PIQ T+P+ ++RHD+ G A+TGTGKT F +P+L Sbjct: 34 FSDFGVEPEIVAALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHD 93 Query: 63 L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L+L PTRELA QVA + + + GG+ F++Q Sbjct: 94 IIGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQ 153 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L+ G +V++ TPGR++D G+L + + LV+DEAD MLDMGF+P ++ + + P Sbjct: 154 IQSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATP 213 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ ++ P I PS ++T+ Y +S K + Sbjct: 214 PERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEEV 273 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ+++ IIF K++ L L +GF+ AIHG+++Q +R + L F+ G Sbjct: 274 VARILQAKNRGLT-IIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHG 332 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV NF+ P + YIHRIGRT RAG G A T V E + Sbjct: 333 KVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFVDWESV 392 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399 I + +E L P E + H +A N PI Sbjct: 393 TRWRVINRALE----------LGLENPTETYHTSAHLYADLNIPI 427 >gi|269124787|ref|YP_003298157.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora curvata DSM 43183] gi|268309745|gb|ACY96119.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM 43183] Length = 562 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 149/377 (39%), Positives = 214/377 (56%), Gaps = 23/377 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P+++ A+ GY +PTPIQ + IP +L D+ G A TGTGKTA+F LP+L Sbjct: 12 FADLQLRPELLTALAGLGYEEPTPIQREAIPHLLAGRDLLGQAATGTGKTAAFALPILH- 70 Query: 63 LEKGRARVRMPR--------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 R PR L+L PTRELA QVAD F +YG+ + V + GG P Sbjct: 71 --------RTPRPADEPDPGALVLVPTRELAVQVADAFHRYGREMGVRVLPVYGGAPIGR 122 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L+RG DV++ TPGR LD +R L + + +V+DEAD MLDMGF I+ I + Sbjct: 123 QIQVLKRGVDVVVATPGRALDLIDRDVLRLARLRTVVLDEADEMLDMGFAEDIEAILAQT 182 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV---ATYAQYSKK 231 P RQT+LFSAT+ + ++ L+ P RIE+ P E V A + K Sbjct: 183 PPQRQTVLFSATVPPRIDGIARRHLREPVRIEIARPER--EVGRPPLVRQRAYVVDRAHK 240 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 A L +LL + I+FC + V L L +G+ A+HG + Q R +++ Sbjct: 241 PAALGRLLDVE-APTAAIVFCRTRDQVDELTEMLNGRGYRAEALHGGMSQDQRDRVMGRL 299 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + GT +L++A+D+AARG+D+ + HV N+ VP+ ++Y+HRIGR GRAGR G AFTL Sbjct: 300 RAGTAELLIATDVAARGIDVEHLTHVVNYHVPSDPDSYVHRIGRVGRAGREGVAFTLAEP 359 Query: 352 EDIKHIDAIEKLIEKKV 368 + + + +IE+ K+ Sbjct: 360 REHRMLKSIERATGHKI 376 >gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase domain-containing protein [Salinispora arenicola CNS-205] gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola CNS-205] Length = 574 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 212/367 (57%), Gaps = 3/367 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL +++ A+ GY +PTPIQ + IP +L D+ G A TGTGKTA+F LP+L Sbjct: 18 FVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLQR 77 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + R P L+L PTRELA QV++ F +YGK V + GG P Q + L+ G Sbjct: 78 MSVDRP-TGDPVALVLVPTRELAVQVSEAFHRYGKELGTRVLPIYGGQPIGRQLRALDSG 136 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH RG L + ++ +V+DEAD MLDMGF I+ I P RQT+L Sbjct: 137 VDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVL 196 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSATM + ++ L +P RI + A + Y + K A L ++L Sbjct: 197 FSATMPARIDGMARAHLTDPIRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDI 256 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+FC ++ V L ++ +G+ A+HG + Q R +++ + GT L++A Sbjct: 257 E-SPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLMA 315 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+DVP+ E+Y+HRIGR GRAGR G A TL + + IE Sbjct: 316 TDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIE 375 Query: 362 KLIEKKV 368 ++ +++ Sbjct: 376 RVTGQRI 382 >gi|303238769|ref|ZP_07325301.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] gi|302593648|gb|EFL63364.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] Length = 544 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 141/362 (38%), Positives = 227/362 (62%), Gaps = 9/362 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LS ++ A+ D G+ + TPIQ +TIP +L+ D+ G AQTGTGKT +F +P + + Sbjct: 6 FKDLNLSDEIQKAIADMGFEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIPAIEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120 L+ +++ LIL PTRELA Q+++ K Y + +L GG P + Q L+ Sbjct: 66 LDPQNEGIQV---LILSPTRELAIQISEELRDVSK-YKEGIKILPVYGGQPIDRQIAALK 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++I TPGRI+DH R L + ++++L++DEAD ML+MGF I I VP +QT Sbjct: 122 KRPQIIIGTPGRIMDHMRRRTLKLADLKMLILDEADEMLNMGFREDIDTILEKVPEEKQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM E+ ++ +L+NP I+ T +IE ++ S K +L +L+ Sbjct: 182 ILFSATMPKEILDLTSKYLKNPLHIKAAHKQMTVPSIEQFYLE--VSQSSKLEILSRLID 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + ++FCN K+ V L SL+ +G+S A+HG++ Q R ++++ F++G I +++ Sbjct: 240 A-NNIGLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V VFN+D+P+ E Y+HRIGRTGRAG+ GK+FT V +I + I Sbjct: 299 ATDVAARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGRAGKTGKSFTFVVGREIHKLKDI 358 Query: 361 EK 362 ++ Sbjct: 359 QR 360 >gi|295676852|ref|YP_003605376.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] gi|295436695|gb|ADG15865.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] Length = 544 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 148/384 (38%), Positives = 220/384 (57%), Gaps = 24/384 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLS +VV A+ AGY PTP+Q + +P + D+ + TG+GKTA+F+LP + Sbjct: 38 FASLGLSAEVVSALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97 Query: 63 L-----------------EKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNY-N 100 + GR R V P L+L PTRELA QV YGK+ Sbjct: 98 FAQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 157 Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 L ++GG+ + Q L + ++L+ TPGR++DH RG++ ++ ++ILV+DEADRMLD Sbjct: 158 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 217 Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 MGFI I I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ I Sbjct: 218 MGFIDDIDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNISQT 277 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 V K LL LL++ D + I+F K + L L GF A+HG++ Sbjct: 278 -VHYVDDRDHKDRLLDHLLRA-DGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLP 335 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGRTGRAG Sbjct: 336 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 395 Query: 341 RHGKAFTLVAKEDIKHIDAIEKLI 364 R G A +LV + + IE+ + Sbjct: 396 RSGIAVSLVHHAEQGALKRIERFV 419 >gi|240080542|ref|ZP_04725085.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19] gi|240118143|ref|ZP_04732205.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1] gi|240123692|ref|ZP_04736648.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332] gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] Length = 462 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGTSFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR+ D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++ + IEV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L++ ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRTGRAGR G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHK 360 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 361 IEKYINRKL 369 >gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L] gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L] Length = 547 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 226/368 (61%), Gaps = 7/368 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L + ++ A+ D GY +P+PIQ K IP+VL+ +DV G AQTGTGKTA+F +P+L Sbjct: 5 NFNELAVKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLE 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLE 120 ++ R++ ++L PTRELA QV++ K K + L I GG P + Q K L+ Sbjct: 65 KIDPSDKRLQ---AIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIKALK 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G V+I TPGR++DH NR L + ++++V+DEAD MLDMGF I+ I S P RQT Sbjct: 122 GGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSSTPQERQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++ + + P I+V T I+ ++ T + S K +L +L+ Sbjct: 182 SLFSATMPKAILELTQKYQKEPVHIKVVRKELTVNNIKQFYIET--RKSNKLEVLTRLID 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K ++F N KK L L+ +G+ ++HG++ Q R ++ F+ GTI ++V Sbjct: 240 VYNP-KLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV V N+++P E Y+HRIGRTGRAGR G AF+ V +++ + I Sbjct: 299 ATDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGIAFSFVFGREMRKLKDI 358 Query: 361 EKLIEKKV 368 E+ + KV Sbjct: 359 ERYTKSKV 366 >gi|255690282|ref|ZP_05413957.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides finegoldii DSM 17565] gi|260624185|gb|EEX47056.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides finegoldii DSM 17565] Length = 621 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 141/367 (38%), Positives = 227/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q K IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRRAIEEMGYENPMPVQEKVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTESINAILADVPKERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+LQN K I + + + ++H +A+ K L++++ Sbjct: 181 LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVHAK--DKYEALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|162139465|ref|YP_001171714.2| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501] Length = 476 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +T Sbjct: 90 FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQ 149 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LE + R PR LI+ PTREL Q+A++ K L V +GG+ F+ Q K+ Sbjct: 150 LLETPPPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 209 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 210 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 269 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + NP +E+ + ++T+E A S K LL Sbjct: 270 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAG--SDKYKLL 327 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ ++F N+K V + L K G S + G++ Q R++ L F+EG Sbjct: 328 YNLI-TQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 386 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ + + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 387 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAF 446 Query: 356 HIDAIEKLIEKKV 368 + IE LI +K+ Sbjct: 447 ALPPIEALIGRKI 459 >gi|284038208|ref|YP_003388138.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74] gi|283817501|gb|ADB39339.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74] Length = 380 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 226/375 (60%), Gaps = 7/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++LGLS ++ A+ Y KP PIQ + IP +LQ D+ GIA+TG+GKTASFVLP+L Sbjct: 1 MPFSELGLSKPLIKAIASQHYPKPYPIQQEAIPAILQGKDILGIAKTGSGKTASFVLPIL 60 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117 + + K AR R + L L PTRELA QVA+ F+ + N + + GG+ Q Sbjct: 61 ELFQRKSVARNRYIKALALVPTRELAVQVAEVFQTFSANLPRKVKTVAVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L R A++++ TPGR+LD L + +++ILV+DEAD+MLD+GF ++ I +P Sbjct: 121 AL-RDAEIVVATPGRLLDLMASNALQLTDVDILVLDEADKMLDLGFEEEMERIFDRLPRH 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSAT+ D ++ +++N L+NP +IEV + I+ A +K LL+ Sbjct: 180 RQTILFSATLGDAIEDINKNLLRNPVKIEVVEEEQNLDLIKQT--AYRVDAERKGPLLRY 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ + MK ++F + + N+ L K G AIH Q +R L+ FK G + Sbjct: 238 LIK-EGKMKQVLVFVSSTRTADNVVVKLNKNGIHAAAIHSGKTQGARTDALTKFKGGHLT 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+DL +RG+DI + HV NF++P ++YIHRIGRTGRA G+A +L+ ED H Sbjct: 297 VLVATDLISRGIDIQLLPHVINFELPRSPKDYIHRIGRTGRAEAEGEAISLICPEDEHHF 356 Query: 358 DAIEKLIEKKVDWLN 372 I+K + K+V+ L Sbjct: 357 KIIQKKMGKRVEILE 371 >gi|28897062|ref|NP_796667.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD 2210633] gi|153837936|ref|ZP_01990603.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810] gi|260363937|ref|ZP_05776676.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030] gi|260877980|ref|ZP_05890335.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034] gi|260896348|ref|ZP_05904844.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus Peru-466] gi|260900676|ref|ZP_05909071.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037] gi|28805270|dbj|BAC58551.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD 2210633] gi|149748714|gb|EDM59565.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810] gi|308085198|gb|EFO34893.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus Peru-466] gi|308090073|gb|EFO39768.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034] gi|308110247|gb|EFO47787.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037] gi|308112560|gb|EFO50100.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030] gi|328471865|gb|EGF42742.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329] Length = 459 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 224/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +GL+P ++ + Y TPIQ ++P +L + DV G +TG+GKTA+F L +L+ Sbjct: 6 FDQVGLNPALLETLDSLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH +G++ + + LV+DEADRML+MGF + I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIINAAPKQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++K+++ +++P+ I+V + T+ +I F ++ AL LL Sbjct: 183 LFSATFPEKIEKIAQRIMKSPEMIKVESTHDTS-SIAQYFYKVEGTEARDEALANLLLTY 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V N+ L +GFSV IHG+++QR R + L F ++ ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRERDQALVQFANKSVSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++D + IE Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359 Query: 362 KLIEKKV 368 + +E V Sbjct: 360 EYLEMDV 366 >gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243] gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1] gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus mulieris FB024-16] gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243] gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1] gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus mulieris FB024-16] Length = 523 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 145/405 (35%), Positives = 228/405 (56%), Gaps = 19/405 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D G+ P++V A+ D G + P PIQ T+P+ ++RHD+ G A+TGTGKT F +P+L Sbjct: 34 FSDFGVEPEIVAALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHD 93 Query: 63 L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L+L PTRELA QVA + + + GG+ F++Q Sbjct: 94 IIGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQ 153 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L+ G +V++ TPGR++D G+L + + LV+DEAD MLDMGF+P ++ + + P Sbjct: 154 IQSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATP 213 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ ++ P I PS ++T+ Y +S K + Sbjct: 214 PERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEEV 273 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ+++ IIF K++ L L +GF+ AIHG+++Q +R + L F+ G Sbjct: 274 VARILQAKNRGLT-IIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHG 332 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV NF+ P + YIHRIGRT RAG G A T V E + Sbjct: 333 KVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFVDWESV 392 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI 399 I + +E L P E + H +A N PI Sbjct: 393 TRWRVINRALEL----------GLENPTETYHTSAHLYADLNIPI 427 >gi|117620037|ref|YP_857223.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561444|gb|ABK38392.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 408 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 144/346 (41%), Positives = 217/346 (62%), Gaps = 5/346 (1%) Query: 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR--MPRTLILEPTR 82 TP+Q + IP + + DV AQTGTGKTA+F LP+L L A V+ R LIL PTR Sbjct: 2 TPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQRLVDNPAPVQPSNARVLILTPTR 61 Query: 83 ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142 ELAAQVA N + K+ ++T + GG + Q +KL+ GA +++ TPGR+L+H L Sbjct: 62 ELAAQVASNINDFAKHLDITTLTIYGGGKQDVQARKLKAGAHIIVATPGRLLEHLTACNL 121 Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202 ++ +E LV+DEADR+LDMGF +Q I V TRQ LLFSAT ++ ++K++ L P Sbjct: 122 SLSGVECLVLDEADRILDMGFSADVQQILQAVNKTRQNLLFSATFSEAVKKLANLMLDKP 181 Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262 + + VN +STA+T+ H + +K LL +L+ Q+ ++F + +++ L Sbjct: 182 QIVSVNKQNSTADTVSHTVYPV--EQKRKRELLSELIGKQN-WPQVLVFASTRESCDELV 238 Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322 L G +HG+ Q SR + L F EG ++++VA+++AARGLDIPD+ +V N+D+ Sbjct: 239 AELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVATEVAARGLDIPDLEYVVNYDL 298 Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 P AE+Y+HRIGRTGRAG+ G A + V++E+ + + IE LI +K+ Sbjct: 299 PFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLLEIEALIGQKI 344 >gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341] gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341] Length = 639 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 66 NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P T Q Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPETAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL+NP+ ++V + T +E + +K + +LL Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 360 IERVTRSSME 369 >gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115] gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115] Length = 602 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 137/365 (37%), Positives = 215/365 (58%), Gaps = 9/365 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L ++P++ + + G + +PIQ +++PL L D+ G A+TGTGKT +F LP++ Sbjct: 1 MNFDQL-IAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPII 59 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE R R R PR +++ PTRELA QVA+ F K G LT + GG + Q L Sbjct: 60 QKLEPSRERARPPRAIVVAPTRELAKQVAEEFSKSG--VGLTTVTVYGGASYAPQENALR 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR++DH RG L ++ +E V+DEAD ML +GF I+ I P +RQT Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ +++ ++S N+L+ P +++ S A+T+EH V ++ A L + Sbjct: 178 MLFSATLNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVGRSRTRVLADLLTI 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + I+F K+ L + L +G A+HG++ Q R + L F+ G + + Sbjct: 238 YNPE----KAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGV 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP+V V + +P E+Y+HR GRTGRAGR G A + + + + Sbjct: 294 LVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVM 353 Query: 359 AIEKL 363 +E++ Sbjct: 354 GLERI 358 >gi|159904844|ref|YP_001548506.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus maripaludis C6] gi|159886337|gb|ABX01274.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis C6] Length = 546 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 138/362 (38%), Positives = 223/362 (61%), Gaps = 7/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LGLS +++ A+ G+ PTPIQ + IP++++ + DV G AQTGTGKTA+F +P+L Sbjct: 4 FKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIPILE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++G R + LIL PTRELA QVA+ + + L + + GG + Q ++L+R Sbjct: 64 TIDEGS---RNTQALILAPTRELAIQVAEEIDSIKGSKRLNIFPVYGGQSIDRQIRELKR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGRILDH +R + + N+ +V+DEAD ML+MGFI ++ I V ++ L Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRML 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ D + K+++N+++ I+V T + + +++ K LL +++ Sbjct: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSR--DKFELLSRIIDV 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + G+IFC K +V + L ++G++ +HG++ Q R K L FK I ++VA Sbjct: 239 EKEF-YGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLEKFKARKINVLVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI D+ HV N+D+P E+Y+HRIGRTGRAG+ G A T V + + I+ Sbjct: 298 TDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQ 357 Query: 362 KL 363 K+ Sbjct: 358 KI 359 >gi|312143554|ref|YP_003995000.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp. 'sapolanicus'] gi|311904205|gb|ADQ14646.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp. 'sapolanicus'] Length = 529 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 224/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L +S +++ AV D G+ + TPIQ IP VL D+ G AQTGTGKTA+F +P+L Sbjct: 6 FNELDISNEILKAVDDMGFEETTPIQSNAIPAVLAGKDIVGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLER 121 E+ A + P+ +IL PTRELA QV++ ++ K L + GG + Q + L + Sbjct: 64 -EEMDANKKDPQAIILCPTRELAIQVSEELKRLAKYKKRIYTLPVYGGQSIQRQIRALNK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH RG L +N I V+DEAD MLDMGFI I+ + +P RQTL Sbjct: 123 GVQIVIGTPGRVMDHIRRGTLKLNQINYFVLDEADVMLDMGFIDDIETVLRDIPEDRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSAT+ ++++S + +N + ++V T +IE + + K L +LL Sbjct: 183 FFSATIPKSIRRLSRKYQKNSQFLKVAHEKLTVPSIEQYYYEL--RRHDKLKALTRLLDL 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+FCN +K V L L+ +G+ AIHG ++Q R +++ F+ G I+++VA Sbjct: 241 NNP-ELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMGKFRNGIIEILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ D+ VFN+D+P + Y+HRIGRTGRAG+ GKAF+ V +DI + I+ Sbjct: 300 TDVAARGIDVDDIEAVFNYDLPQDTDYYVHRIGRTGRAGKSGKAFSFVVGKDIYKLRDIQ 359 Query: 362 KLIEKKV 368 K + K+ Sbjct: 360 KYTKTKI 366 >gi|315644143|ref|ZP_07897313.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] gi|315280518|gb|EFU43807.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] Length = 481 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 146/399 (36%), Positives = 231/399 (57%), Gaps = 12/399 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ A+ GY PT +Q + IP+ L++ D+ +QTG+GKTA++ +P+ Sbjct: 6 FTDYPLSEEIRRALDSLGYTTPTEVQTEVIPVALEKRDLVVKSQTGSGKTAAYGIPLCEQ 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ LIL PTRELA QV ++ G+ + L G PF Q +L++ Sbjct: 66 VEWNENK---PQALILTPTRELALQVNEDITNIGRFKRIKATPLYGRHPFHMQKAELKQR 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH RG L ++ I LVIDEAD ML+MGFI +Q+I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIERGSLSLDRISHLVIDEADEMLNMGFIEQVQSIIQALPRNRVTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT +++ K++ ++ +P++IE+ T TI+H V + + K A+LQ LL + Sbjct: 183 FSATFPEDVAKLAHKYMNHPEQIEIKASGLTTATIDHAQVQ--VKEADKLAVLQNLLITT 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+FC +++V L +L G+ IHG ++Q R +++ F+ G + ++A+ Sbjct: 241 NP-DSCIVFCRTQEHVDTLFRALADLGYPCDRIHGGMEQEERFEVMHAFRRGQFRYLIAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG+ G A TLV D + IE Sbjct: 300 DVAARGIDISNITHVINYDIPLEKESYVHRTGRTGRAGQTGSAITLVTPRDSGRLADIEA 359 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 I + + P EK+D + RK N P+ Sbjct: 360 YIGFAIPKMTA------PSEEKVDECREAFERKLNIRPK 392 >gi|307823522|ref|ZP_07653751.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] gi|307735507|gb|EFO06355.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] Length = 462 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 225/369 (60%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P ++ + GY TPIQ +++P +L+ DV A+TG+GKTA+F + +L+ Sbjct: 6 FSSLALKPALLENIESLGYTHLTPIQAESLPHILEGRDVIAQAKTGSGKTAAFGIGLLSK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ RV+ +++ PTRELA QV + + N+ V L GG+PF Q LE Sbjct: 66 LDLNSFRVQ---AMVVCPTRELADQVCKEIRRLARFTQNIKVLTLCGGVPFGPQRASLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+ +H + L ++N+++LV+DEADRMLDMGF I ++ S P RQTL Sbjct: 123 GVHVVVGTPGRLQEHLGKRSLRLSNLKVLVLDEADRMLDMGFEEAITDVISYAPTHRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT TD ++++S+ F P + + T ++ IE F + SK+ L LL S Sbjct: 183 LFSATYTDPIREISQKFQFKPVSVSIETSHHDSD-IEQRFYQV--EKSKRTNALGYLL-S 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ ++FCN K++ ++ SLE GF+V A+HG+++Q+ R ++L F + ++VA Sbjct: 239 YYRPESTVVFCNTKRDCQDVASSLENSGFTVQALHGDLEQKDRDQVLVRFSNKSCSVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI D+ V N+D+P E Y+HRIGRTGRAG+ G A +L ++++ + AIE Sbjct: 299 TDVAARGLDIKDMQAVINYDLPWDPEIYVHRIGRTGRAGKKGLALSLCTEQELNRVKAIE 358 Query: 362 KLIEKKVDW 370 + W Sbjct: 359 EYQNTPAKW 367 >gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus H19] gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus H19] Length = 506 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/384 (39%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 63 KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIF K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIIFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E +K +S+L PP K Sbjct: 356 EDANGRK-------MSALRPPHRK 372 >gi|307252129|ref|ZP_07534028.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860429|gb|EFM92443.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 596 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 138/351 (39%), Positives = 221/351 (62%), Gaps = 7/351 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+V P+PIQ +TIP +L DV G+AQTG+GKTA+F LP+L ++ + R P+ L++ Sbjct: 2 GFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPTK---RHPQMLVMA 58 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVAD E++ KN + V + GG ++ Q + L++G+ V++ TPGRILDH Sbjct: 59 PTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIR 118 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG L ++ ++ +V+DEAD ML MGFI ++ + + +P QT LFSATM + +++++ F Sbjct: 119 RGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRF 178 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 +Q+P+ +++ +A I + + K ALL+ L + IIF K Sbjct: 179 MQDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL--EVEEFDAAIIFTRTKTGT 235 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +++ E+ G+ A++G++ Q++R + L K G + ++VA+D+AARG+DI + V Sbjct: 236 IDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVV 295 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 NFD+P AE+Y+HRIGRTGRAGR G+A V + + + IE L++K +D Sbjct: 296 NFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPID 346 >gi|229821387|ref|YP_002882913.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333] gi|229567300|gb|ACQ81151.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM 12333] Length = 580 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 221/387 (57%), Gaps = 18/387 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+S +V A+ D G V P PIQ T+P+ LQ HD+ G A+TGTGKT F +P+L Sbjct: 49 FADFGVSDAIVTALRDVGIVHPFPIQSLTLPVALQAHDIIGQAKTGTGKTLGFGIPLLER 108 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E G V P + L++ PTRELA QVA + E ++ V L GG +E Q Sbjct: 109 VVGPGEDGWDAVEAPGAPQALVVVPTRELAVQVAGDLETAARHRKARVVQLYGGRAYEPQ 168 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L RG +V++ TPGR++D + L ++++ +V+DEAD MLD+GF+P ++ + + P Sbjct: 169 VAALGRGTEVVVGTPGRMIDLMRQRVLDLSHVRTVVLDEADEMLDLGFLPDVETLLAATP 228 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ F+ +P I + P+ T++ Y ++ K + Sbjct: 229 PQRHTMLFSATMPGAVVALARRFMSHPTHIRAHDPNDDGATLKAIRKVVYRAHALDKVEM 288 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L +LLQ+ D I+F K+ + L +GF+ AIHG++ Q +R + L F+ G Sbjct: 289 LARLLQA-DGRGLTIVFTRTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRHG 347 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+DI DV HV N+ P + ++HRIGRTGRAG G A T V +DI Sbjct: 348 KVDVLVATDVAARGIDIDDVTHVVNYQCPEDEKTFLHRIGRTGRAGNTGTAVTFVDWDDI 407 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPP 381 I++ +E L + NPP Sbjct: 408 PRWALIDRALE---------LGTPNPP 425 >gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp. damselae CIP 102761] gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp. damselae CIP 102761] Length = 647 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L+ ++ A+ G+V PTPIQ +IPL+L D G AQTGTGKTA+F LP+L Sbjct: 7 EFRQLELADTLLSALDKMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPLLN 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ + + P+ +++ PTRELA QVA + G+N L V + GG Q + L+ Sbjct: 67 KLKLSQHK---PQAIVMAPTRELAIQVAAEVKTLGQNIQGLKVLEIYGGASIVDQMRALK 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+ D R +L ++ + V+DEAD ML MGF+ + I P T Q Sbjct: 124 NGAHIVVGTPGRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQR 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++++ + FL+NP RI+V + T ++ F +K + +LL+ Sbjct: 184 VLFSATMPPIVKEIVDRFLRNPARIDVAGENRTVAKVDQQFWVVKG--VEKDEAMMRLLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++DT I+F +++ L L +GF A+HG+I Q R + + + K G I ++V Sbjct: 242 TEDT-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + I Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTI 360 Query: 361 EKLIEKKVD 369 E++ + +++ Sbjct: 361 ERVTKSRME 369 >gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma laidlawii PG-8A] gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii PG-8A] Length = 448 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 148/374 (39%), Positives = 225/374 (60%), Gaps = 7/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L + ++ A+ +GY PT IQ + IP++L D+ G AQTGTGKTA+F +P+L Sbjct: 1 MKFSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPIL 60 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + + + PR LIL PTRELA Q+ +N + Y K N+ + GG+ + Q + Sbjct: 61 QKIYETKEH-KAPRKVQALILTPTRELALQIHENVKIYAKYLNIISTTIYGGVSQKRQEE 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+RG DV+I TPGR+LD N+ + + ++ LV+DEAD+MLDMGFI + +I P Sbjct: 120 ALKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKK 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSATM +++ +S+ L NP+RI V + T + I + K LL Sbjct: 180 RQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVY--MVNKANKTLLLID 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ + + MK+ ++F K L +L G IHG+ Q +R + L+NFK+G + Sbjct: 238 LIYTLN-MKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTK 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + +V NF++P E YIHRIGRTGRAG G A +LV + K + Sbjct: 297 ILVATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLL 356 Query: 358 DAIEKLIEKKVDWL 371 +EK I K++ + Sbjct: 357 TQVEKHINSKIEAV 370 >gi|308050678|ref|YP_003914244.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799] gi|307632868|gb|ADN77170.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799] Length = 649 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 219/363 (60%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F+ LGL ++ A+ G+ PTPIQ + IP +L HD+ G A TGTGKTA+F LP L Sbjct: 5 VEFSSLGLPESLLSALSAMGFTSPTPIQAQAIPFMLDGHDILGEAATGTGKTAAFGLPAL 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ R R + L+L PTRELA QVA E++ N + V L GG P+ Q + L Sbjct: 65 AGID---PRQRAAQMLVLAPTRELAIQVATALEEFAVNMKGMRVTTLYGGQPYGPQLRDL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG V++ TPGR++DH RG + +++I+ V+DEAD ML+MGF+ I+ I +P Q Sbjct: 122 ERGTQVVVATPGRLMDHIRRGSIELDSIQCCVLDEADEMLNMGFLEDIEWILEHLPDQTQ 181 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++++E FL++PK +++ + + I A K L++L Sbjct: 182 MALFSATMPNQIRRIAERFLKDPKHVKIASDRTQKANIVQK--AWKVSGLNKLTALERLS 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ D I+F + + + L + L GF A++G++ Q+ R ++ +G I ++ Sbjct: 240 ETLD-YDAMIVFVRTRNDTMELANHLNNMGFKAAALNGDMSQQQREHTVAQLHKGKINIL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+ ARGLD+P + HV NFD+P +E+Y+HRIGRTGRAGR G+A +++ + Sbjct: 299 IATDVVARGLDVPRITHVLNFDLPMDSESYVHRIGRTGRAGRSGEAILFARPRELRQLRF 358 Query: 360 IEK 362 E+ Sbjct: 359 YER 361 >gi|307249783|ref|ZP_07531761.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858198|gb|EFM90276.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 596 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 138/351 (39%), Positives = 221/351 (62%), Gaps = 7/351 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+V P+PIQ +TIP +L DV G+AQTG+GKTA+F LP+L ++ + R P+ L++ Sbjct: 2 GFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPTK---RHPQMLVMA 58 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVAD E++ KN + V + GG ++ Q + L++G+ V++ TPGRILDH Sbjct: 59 PTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIR 118 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG L ++ ++ +V+DEAD ML MGFI ++ + + +P QT LFSATM + +++++ F Sbjct: 119 RGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRF 178 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 +Q+P+ +++ +A I + + K ALL+ L + IIF K Sbjct: 179 MQDPQEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL--EVEEFDAAIIFTRTKTGT 235 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +++ E+ G+ A++G++ Q++R + L K G + ++VA+D+AARG+DI + V Sbjct: 236 IDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVV 295 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 NFD+P AE+Y+HRIGRTGRAGR G+A V + + + IE L++K +D Sbjct: 296 NFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPID 346 >gi|170696489|ref|ZP_02887614.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] gi|170138592|gb|EDT06795.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] Length = 537 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 147/389 (37%), Positives = 226/389 (58%), Gaps = 33/389 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLS VV A+ AGY PTP+Q + +P + D+ + TG+GKTA+F+LP + Sbjct: 52 FASLGLSADVVSALTAAGYQNPTPVQQRAVPAAIAGRDLMVSSPTGSGKTAAFMLPAIER 111 Query: 61 -TILEKGRAR-------------------VRMPRTLILEPTRELAAQVADNFEKYGKNY- 99 + L+K +A V P L+L PTRELA QV YGK+ Sbjct: 112 FSQLQKAQASQPREPRPADGARNTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLK 171 Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159 L ++GG+ + Q L + ++L+ TPGR++DH RG++ ++ ++ILV+DEADRML Sbjct: 172 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 231 Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAE 215 DMGFI I+ I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ ++ A+ Sbjct: 232 DMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRLEQRTNIAQ 291 Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275 T+ + K LL LL+ + + I+F K + L L GF A+ Sbjct: 292 TVHYV-----DDRDHKDRLLDHLLRDEG-LDQAIVFTATKMDADQLAGRLADAGFESAAL 345 Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335 HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGR Sbjct: 346 HGDLPQGARNRTIKALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGR 405 Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 TGRAGR G A +LV + + IE+ + Sbjct: 406 TGRAGRSGIAVSLVHHAEQGALKRIERFV 434 >gi|242310089|ref|ZP_04809244.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489] gi|239523386|gb|EEQ63252.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489] Length = 504 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 147/384 (38%), Positives = 224/384 (58%), Gaps = 9/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G KV+ + + G+ +P+PIQ + IP++L DV AQTGTGKTA+F LP++ Sbjct: 14 FGIFGFKKKVLDGIREVGFREPSPIQKEVIPIILDGLDVIAQAQTGTGKTAAFALPLVNG 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ + L++ PTREL Q+ D K GK + L GG P + Q + L + Sbjct: 74 LKHNGS----IEALVIAPTRELVMQIGDEIFKLGKYNKVRTVSLFGGQPIQRQVELLAKK 129 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH G+L +I+V+DE+D MLDMGF+ I+ I S +P RQTLL Sbjct: 130 PQIVIATPGRLLDHLRNGRLKKFAPQIVVLDESDEMLDMGFLDDIEEIFSYLPSERQTLL 189 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++ +++ L NPK +++ +T + I + Q + + +L+ S+ Sbjct: 190 FSATMPTPIKHLAQKILHNPKLVKITPSDTTNQDISQRYYIINEQEREDAIV--RLIDSE 247 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K IIF KK LC L +G+ A+HG+++QR R K + FK+ ++ ++VA+ Sbjct: 248 MPTK-AIIFTRMKKEADLLCERLVDRGYKAGALHGDMEQRERQKSIKAFKDSSVNILVAT 306 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HVFNF +P E+Y+HRIGRTGRAG+ G A TL + K + I++ Sbjct: 307 DIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIKE 366 Query: 363 LIEKKVDWLNGDLSSLNPPLEKID 386 + K++ ++ +L L+K D Sbjct: 367 NTKAKIELY--EIPNLQDTLDKKD 388 >gi|145632474|ref|ZP_01788208.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655] gi|144986669|gb|EDJ93221.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655] Length = 613 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 228/369 (61%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH R L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ NP+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNNPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|331018940|gb|EGH98996.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 442 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 220/371 (59%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y +N L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAENLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG+ G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase) [Aliivibrio salmonicida LFI1238] gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase) [Aliivibrio salmonicida LFI1238] Length = 641 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 217/363 (59%), Gaps = 7/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L ++ A+ + G+V PTPIQ ++IPL+L D G AQTGTGKTA+F LP+L Sbjct: 7 EFRQLALEETLLSALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAFSLPLLN 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 K + P+ +I+ PTRELA QVA + G+N L V + GG Q + L Sbjct: 67 ---KINLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALS 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D NR +L + + ++DEAD ML MGF+ + I P T Q Sbjct: 124 RGAHIVVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPETAQR 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++ + + +L++P R++V ++T E + F + +K + +LL+ Sbjct: 184 ILFSATMPPMVKTIVDRYLRDPARVDVAGTNNTVEQVTQNF--WIVKGVEKDEAMSRLLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + I+F +++ L L +GF A+HG+I Q R + + + K G I ++V Sbjct: 242 TEE-IDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + I Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360 Query: 361 EKL 363 E++ Sbjct: 361 ERV 363 >gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis RP62A] gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis M23864:W2(grey)] gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus epidermidis RP62A] gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis M23864:W2(grey)] gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus epidermidis VCU144] gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus epidermidis VCU045] Length = 509 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 156/412 (37%), Positives = 233/412 (56%), Gaps = 25/412 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S K V + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ K + V + GG+P E Q K L+R Sbjct: 63 KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q++ + F++ PK I+ + I+ + T + +K L Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402 E D N + +L PP K D Q+ +R+N P Q+ Sbjct: 356 E-------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 400 >gi|331268829|ref|YP_004395321.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925] gi|329125379|gb|AEB75324.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925] Length = 476 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 226/364 (62%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F + LS +++ + GY PT +Q K IP+ L+ D+ +QTG+GKTASF +P Sbjct: 1 MNFKEFNLSNEILKTIQMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK + + P+ LIL PTRELA Q+ ++ G+ + + G P Q +L+ Sbjct: 59 -VCEKVKLENKKPQALILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR DH +G + ++++ L+IDEAD+ML+MGFI ++++ +P R T Sbjct: 118 QRVHIVVGTPGRTFDHIEKGNMELSDVRYLIIDEADKMLNMGFIDQVEDVIKSLPKDRVT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ + ++K+ ++ +P++IE++ + T + IE + + +K +LL +++ Sbjct: 178 MLFSATLEERIEKLCVKYMNDPEKIEIDKKNVTTDIIEQEYYD--VESDRKFSLLNKIIY 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + IIFCN K V ++ ++ +GF A+HG ++Q+ R++++ FK G +V Sbjct: 236 TERP-DSCIIFCNTKAEVGSIAVKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ HV N++VP E+Y+HRIGRTGRAG GK+ T V + + + +I Sbjct: 295 ATDVAARGIDIEEITHVINYEVPAEKESYVHRIGRTGRAGHKGKSITFVCEYEDRKFKSI 354 Query: 361 EKLI 364 E+ I Sbjct: 355 EEYI 358 >gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178 str. F0338] gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178 str. F0338] Length = 575 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 216/370 (58%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G++ +V A+ D G P PIQ T+ L RHD+ G A+TGTGKT F +P+L Sbjct: 80 FADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLED 139 Query: 63 L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E G + P+ LI+ PTREL+ QVA + K + + + GG+ FE Q Sbjct: 140 VIAPDEPGFDDLLNPNSPQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFEPQ 199 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L++GADV++ TPGR++D +G L ++ +E +V+DEAD MLD+GF+P ++ + S VP Sbjct: 200 ISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVP 259 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ F+++P I P +T+ Y +S K + Sbjct: 260 SHRHTMLFSATMPGPVVALARKFMEHPTHIRAQDPDDQHQTVNTVKQVVYRVHSLNKVEV 319 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++LQS+ + +IFC K+ L L +GF+V ++HG++ Q +R + L F+ G Sbjct: 320 LARILQSKGRGR-AVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNG 378 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ P + YIHRIGRTGRAG G A T V +D Sbjct: 379 KVDVLVATDVAARGIDVDDVTHVVNYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 438 Query: 355 KHIDAIEKLI 364 I K + Sbjct: 439 PRWSLISKAL 448 >gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 525 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 218/371 (58%), Gaps = 9/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD + P++V A+ D G + P PIQ T+P+ L R D+ G A+TGTGKT F +P+L Sbjct: 28 FADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILHD 87 Query: 63 L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QVA + + + GG+ F++Q Sbjct: 88 IIGPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFDSQ 147 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +G +V++ TPGR++D N+G L + I LV+DEAD MLDMGF+P ++ + S +P Sbjct: 148 VEALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQIP 207 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ ++ P I P+ +++T+ Y +S K + Sbjct: 208 PRRHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYRVHSLNKTEV 267 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ+++ IIF K+ L L ++GF+ AIHG++ Q +R + L F+ G Sbjct: 268 IARILQARNRGLT-IIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHG 326 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N++ P + YIHRIGRT RAG G A T + ED+ Sbjct: 327 KVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFIDWEDL 386 Query: 355 KHIDAIEKLIE 365 I + ++ Sbjct: 387 TRWRVINRTLD 397 >gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM 7299] Length = 488 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 228/369 (61%), Gaps = 9/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D + A+ DAG+ +P+PIQ IP+VL D+ G AQTGTGKTA+F LPM+ Sbjct: 1 MTFKDFNFKENLQRAIEDAGFKEPSPIQQDAIPVVLSGKDMVGQAQTGTGKTAAFGLPMI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ G + V +++ PTRELA QV+D ++GK+ + A + GG + Q + ++ Sbjct: 61 NMM-NGNSGVE---AVVIVPTRELAMQVSDELFRFGKSSGMNTATVYGGQSYNMQLRNID 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R A +++ TPGR++D +GK + +V+DEAD MLDMGF+ I+ I + +P RQT Sbjct: 117 R-ASIIVATPGRLIDLL-KGKKIDIKPSFVVLDEADEMLDMGFLDDIKEIFTYLPKERQT 174 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++K+++N L+ P+ I V T I F +Y + AL++ L Sbjct: 175 LLFSATMPPAIKKLAQNILKEPEFITVTKAEMTNSKITQLFYVV-DEYERDDALIR-LFD 232 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ K+ IIFC KK V L L QG +HG+++QR R +++ +FK+G + +++ Sbjct: 233 FKNPEKS-IIFCRTKKEVDRLSTYLVSQGHMAKGLHGDMEQRQREEVIRSFKKGALDVLI 291 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HVFN+ +P +E+Y+HRIGRTGRAG+ G A ++V + + I I Sbjct: 292 ATDVAARGLDVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHEFRMIQKI 351 Query: 361 EKLIEKKVD 369 + + K++ Sbjct: 352 QHVTGGKME 360 >gi|153834391|ref|ZP_01987058.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01] gi|148869239|gb|EDL68261.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01] Length = 459 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 224/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +GL+P ++ + Y TPIQ ++P +L + DV G +TG+GKTA+F L +L+ Sbjct: 6 FDQVGLNPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH +G++ + + LV+DEADRML+MGF + I P RQTL Sbjct: 123 GAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPKQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++++++ +Q+P+ I+V + T+ +I F ++ AL LL Sbjct: 183 LFSATFPEKIEQIAQRIMQSPEMIKVESTHDTS-SIAQYFYNVEGSEARDEALANLLLTH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L F ++ ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++D + IE Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIE 359 Query: 362 KLIEKKV 368 + ++ V Sbjct: 360 EYLDMDV 366 >gi|218780159|ref|YP_002431477.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761543|gb|ACL04009.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum alkenivorans AK-01] Length = 489 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 240/409 (58%), Gaps = 21/409 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD L ++ + DAG+ + TPIQ + +P+ L D+ G AQTGTGKTA+F++PM + Sbjct: 25 FADFDLPETLLEGLKDAGFERCTPIQAQVLPVALSGKDIAGQAQTGTGKTAAFLVPMFSK 84 Query: 63 LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L R + +P LI+ PTRELA Q+ + E G + + T+A IGG+ + Q L++ Sbjct: 85 LLGLENRSKTLPSALIVAPTRELALQIYEEAEVLGGHTDFTIAQAIGGMDYRKQMDILKQ 144 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQ 179 GAD+LI TPGRI+D++ +G + I+ +VIDEADR+LD+GF ++ I +P RQ Sbjct: 145 GADILIGTPGRIIDYYKQGIFKTHAIKSVVIDEADRLLDLGFAKDMRYILRKMPHYEKRQ 204 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 ++LFSAT++ + +++ +++ P+ I V T + I+ + +K LL + Sbjct: 205 SMLFSATLSYRVLELTYDYMNLPEFISVTPEEVTVKGIDQILY--HVGQDQKLPLLLGVF 262 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D + ++F N K V + H L GF I G++ QR R++++ FK G + ++ Sbjct: 263 KNEDWTR-ALVFVNTKSGVEFVAHKLRGNGFPAGGITGDLPQRKRLQLMERFKNGELSIL 321 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RG+ + DV HV N+D+P ENY+HRIGRT RAG+ GKA +L + + H++ Sbjct: 322 VATDVASRGIHVEDVSHVINYDLPQDPENYVHRIGRTARAGKTGKAISLACEHYVFHLEP 381 Query: 360 IEKLI--EKKVDWLNGDLSSLNPPLEKI---DIAQHNHARKNNPIPQKS 403 +E++I V+W P E+ D A ARK P P + Sbjct: 382 MEEMIGLSLPVEW----------PEEEYFQEDKAGPMPARKRGPKPDQG 420 >gi|256827018|ref|YP_003150977.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641] gi|256583161|gb|ACU94295.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641] Length = 551 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 153/367 (41%), Positives = 211/367 (57%), Gaps = 6/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS K + AV GY PTP+Q + IP VL DV A+TGTGKTA+F LP + Sbjct: 5 FHDLGLSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLPTMDR 64 Query: 63 LEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G AR + P LI+ PTRELA Q+ K V ++GG+ + Q L R Sbjct: 65 L--GHARHGQGPLLLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSYNPQIDSLRR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVLI TPGR++D N+ +N +E LV+DEADRMLDMGF+P ++ I + P RQTL Sbjct: 123 GTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ + L NP +E+ TA+TIE + + K LL LL Sbjct: 183 LFSATIDSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPV--DHRHKNDLLIALLNE 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F + V L K GF+V IH + Q R + + + G ++VA Sbjct: 241 RGGTRI-IVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARG+DIP+V +V N D+P++ E+Y+HRIGRTGRAG G A + V E+ + I+ Sbjct: 300 TDVLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAILRDIQ 359 Query: 362 KLIEKKV 368 KLI K + Sbjct: 360 KLIGKDI 366 >gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4] gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4] Length = 534 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 151/375 (40%), Positives = 220/375 (58%), Gaps = 17/375 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ +VV A+ + G + IQ T+PL L D+ G A+TG GKT F +P+L Sbjct: 40 FAELGVRDEVVRALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHR 99 Query: 63 LEKGRARVR----MPRTLILEPTRELAAQVADNFE------KYGKNYNLTVALLIGGIPF 112 + G PR L++ PTREL QV + E K KN L V + GG P+ Sbjct: 100 ISSGTTGTAALDGTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKPLEVLAIYGGRPY 159 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q L++GADV++ TPGR+LD N+G L++ +E+LV+DEAD MLD+GF+P I+ I + Sbjct: 160 ETQIATLQKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILN 219 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVATYAQYS 229 +VP RQT+LFSATM + ++ FL P I +A T +H + A Sbjct: 220 MVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIY---RAHAL 276 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K ++ ++LQ+ D +IF K+ + L ++GF+V ++HG+++Q +R K L Sbjct: 277 DKAEMVARVLQA-DGRGATMIFTRTKRTAQKVSDELAERGFAVGSVHGDLNQVAREKALK 335 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 F+ G I ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G A TLV Sbjct: 336 AFRSGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLV 395 Query: 350 AKEDIKHIDAIEKLI 364 +DI I+K + Sbjct: 396 DWDDIPRWQLIDKAL 410 >gi|167840691|ref|ZP_02467375.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43] Length = 458 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 152/394 (38%), Positives = 223/394 (56%), Gaps = 14/394 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L+P + + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 1 MPFSTLPLTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 L+ R V+ L+L PTRELA QVA + + N+ V L GG P Q + L Sbjct: 61 ARLDARRFDVQ---ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +RG L + + LV+DEADRMLDMGF I + P RQ Sbjct: 118 EHGAHIIVGTPGRIMDHLDRGTLTLGALNTLVLDEADRMLDMGFFDDIAKVARQCPPARQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT D + K+S+ FL+NPK ++++ ++ + + T + LL Sbjct: 178 TLLFSATYPDGIAKLSQQFLRNPKEVKLDERHDDSKIRQRFYEVTEDERLHAVGLLLNHY 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++ Sbjct: 238 RPVST----IAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + Sbjct: 294 VATDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGG 353 Query: 360 IEKLIEKKVDW-----LNGDLSS-LNPPLEKIDI 387 IE+ ++ V+W L D + L PP+E + I Sbjct: 354 IEQAQKRDVEWHPLAELKADRNEPLLPPMETLQI 387 >gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060] gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060] Length = 528 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 156/412 (37%), Positives = 233/412 (56%), Gaps = 25/412 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S K V + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 22 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 81 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ K + V + GG+P E Q K L+R Sbjct: 82 KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 137 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L I L++DEAD M++MGFI ++ I +P RQT Sbjct: 138 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 197 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q++ + F++ PK I+ + I+ + T + +K L Sbjct: 198 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 255 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 256 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 314 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 315 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 374 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402 E D N + +L PP K D Q+ +R+N P Q+ Sbjct: 375 E-------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 419 >gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4] Length = 398 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 226/369 (61%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL K A+ G +PTPIQ + IPL+++ DV A+TG+GKT +F+LPML Sbjct: 4 FNQLGLHIKSERALEQQGITEPTPIQTEVIPLMVEGRDVIAQAKTGSGKTLAFILPMLEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA QV D +K + + V + GG E Q KLE Sbjct: 64 VDLEKIAVQ---GLIVAPTRELAIQVTDELKKLVELEFPEVNVLAVYGGQDVEKQLHKLE 120 Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 R +++ TPGR+LDH RG + ++ +++L++DEAD+ML +GF+P ++ I P TRQ Sbjct: 121 TRNIHIVVATPGRLLDHMRRGTIDLSELDMLILDEADQMLHIGFLPEVEQIIEATPPTRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSAT++ +++ +++ + Q P ++V E IE FV K AL++ + Sbjct: 181 TALFSATISKDVRTLAKRYQQQPYTVQVKDKERLVEEIEQ-FVVETTDRKKLQALVEVIK 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++Q M GIIFC + V L L+ +GF V +HG++ Q R ++ F++ IQL+ Sbjct: 240 ETQPFM--GIIFCRTIRRVSKLHMELKAKGFLVDELHGDLSQAKRENVMKRFRDAKIQLL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ V HV+N+D+P E+YIHRIGRTGRAG G A T A +D + + + Sbjct: 298 IATDVAARGLDVEGVTHVYNYDIPQDVESYIHRIGRTGRAGETGMAITFSALKDKQALQS 357 Query: 360 IEKLIEKKV 368 +E+ I++ + Sbjct: 358 LEEGIKRSI 366 >gi|323526518|ref|YP_004228671.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1001] gi|323383520|gb|ADX55611.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001] Length = 536 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/388 (38%), Positives = 222/388 (57%), Gaps = 32/388 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLS VV A+ AGY PTP+Q + +P + D+ + TG+GKTA+F+LP + Sbjct: 49 FASLGLSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 108 Query: 63 L-----------------EKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNY-N 100 + GR R V P L+L PTRELA QV YGK+ Sbjct: 109 FAQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 168 Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 L ++GG+ + Q L + ++L+ TPGR++DH RG++ M+ ++ILV+DEADRMLD Sbjct: 169 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDMSQLQILVLDEADRMLD 228 Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216 MGFI I I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ ++ A+T Sbjct: 229 MGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQT 288 Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276 + + K LL LL+ + I+F K + L L GF A+H Sbjct: 289 VHYV-----DDRDHKDRLLDHLLRDAG-LDQAIVFTATKMDADQLAGRLADAGFESAALH 342 Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336 G++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGRT Sbjct: 343 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 402 Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 GRAGR G A +LV + + IE+ + Sbjct: 403 GRAGRSGIAVSLVHHAEQGALKRIERFV 430 >gi|297807481|ref|XP_002871624.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297317461|gb|EFH47883.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] Length = 713 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/354 (40%), Positives = 218/354 (61%), Gaps = 14/354 (3%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLI 77 AG+ P+PIQ ++ P+ +Q D+ IA+TG+GKT +++P L++ RM P L+ Sbjct: 247 AGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILV 306 Query: 78 LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137 L PTRELA Q+ K+GK+ ++ A L GG P Q K++ERG D+++ TPGR+ D Sbjct: 307 LSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL 366 Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 ++ ++ + LV+DEADRMLDMGF P I+ I + VP RQTL+++AT E++K++ + Sbjct: 367 EMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAAD 426 Query: 198 FLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251 L NP ++ E+ S +TIE +A ++S+ L+Q+L+SQ+ IIF Sbjct: 427 LLVNPAQVNIGNVDELVANKSITQTIE--VLAPMEKHSR----LEQILRSQEPGSKIIIF 480 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 C+ K+ L +L + F AIHG+ Q R +L+ F+ G ++VA+D+AARGLD+ Sbjct: 481 CSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDV 539 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 D+ V N+D PN E+Y+HRIGRTGRAG G A+T +D KH + K++E Sbjct: 540 KDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 593 >gi|329123747|ref|ZP_08252307.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116] gi|327469946|gb|EGF15411.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116] Length = 613 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 229/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNNLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans HB-1] gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans HB-1] Length = 417 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 150/400 (37%), Positives = 243/400 (60%), Gaps = 22/400 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+ L ++ ++ + G+V+PTPIQ + IPL L+ HD+ G AQTGTGKTA+F +P++ Sbjct: 1 MEFSFSQLDERIQKSLEEMGFVEPTPIQKEAIPLALEGHDLVGQAQTGTGKTAAFGIPLV 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + R R + ++L PTRELA QVA GKN ++ + GG+ E Q L+ Sbjct: 61 SGIS---PRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAFPIYGGVSIERQINALK 117 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG +++ TPGR+ D NRG L ++ + V+DEAD+MLDMGFI I+ I S P +Q Sbjct: 118 RGRHQIIVGTPGRVKDLINRGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSKTPKEKQ 177 Query: 180 TLLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 TLLFSATM E++++ +L+ + K ++V T + + + + K L++L Sbjct: 178 TLLFSATMPYEIRRLIGRYLKPDYKNVKVGKQLITPKVKQRIILV---RSEDKIKALEKL 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + + I+F K++ ++ L+++G + AIHG++ QR R ++ F+EG +++ Sbjct: 235 LKEHEGVST-IVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVMRAFREGKVKV 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DVG V N+++P E+Y+HRIGRTGRAGR G A +LVA+ + + + Sbjct: 294 LVATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGLAISLVAEPEKRRLY 353 Query: 359 AIEKL-------------IEKKVDWLNGDLSSLNPPLEKI 385 I+ L E K + L D +SL P ++++ Sbjct: 354 RIKGLKGVRPERFRVNTVKELKKELLEADANSLPPYVKRL 393 >gi|68248840|ref|YP_247952.1| cold-shock DEAD-box protein A-like protein [Haemophilus influenzae 86-028NP] gi|68057039|gb|AAX87292.1| Cold-shock DEAD-box protein A homolog [Haemophilus influenzae 86-028NP] Length = 613 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 230/369 (62%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E++ K + T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH R L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis SK135] gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis SK135] gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus epidermidis VCU028] Length = 509 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 156/412 (37%), Positives = 233/412 (56%), Gaps = 25/412 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S K V + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ K + V + GG+P E Q K L+R Sbjct: 63 KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q++ + F++ PK I+ + I+ + T + +K L Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402 E D N + +L PP K D Q+ +R+N P Q+ Sbjct: 356 E-------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 400 >gi|261251266|ref|ZP_05943840.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891] gi|260938139|gb|EEX94127.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891] Length = 458 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/364 (40%), Positives = 221/364 (60%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ + GY + TPIQ + +P+VL DV G +TG+GKTA+F L +L+ Sbjct: 5 FKTLNLRPELTETLDSLGYTEMTPIQQQALPMVLAGKDVIGQGKTGSGKTATFSLGLLSN 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ TL+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 65 LNVKRFRVQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ ++ + LV+DEADRMLDMGF I I VP RQTL Sbjct: 122 GAHILVGTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIDAVPEKRQTL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + ++ + NP+ ++V + + TIE F + AL LL Sbjct: 182 LFSATFPDNIDSLAAKVMVNPEMVKVES-THQKSTIEQKFYKLNTTEERDDALEALLLTH 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L+ F +I ++VA Sbjct: 241 KP--ESSVVFCNTKKEVQNVTDELGHRGFSVVELHGDMEQREREQALTMFANKSISILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++++ + I+ Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARID 358 Query: 362 KLIE 365 + ++ Sbjct: 359 EYMD 362 >gi|192362407|ref|YP_001982121.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107] gi|190688572|gb|ACE86250.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus Ueda107] Length = 477 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 226/370 (61%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA LGL+P+++ AV G+ + TP+Q + IP + D+ AQTGTGKTA+F P+L Sbjct: 29 MNFAALGLAPELLRAVKRCGFQQLTPVQEQAIPPARRGRDLLVTAQTGTGKTAAFGFPLL 88 Query: 61 T-ILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LEK RA + R L+L PTREL QVADN ++Y +LT+A + GG+ +Q K Sbjct: 89 QQLLEKPRATQPGHTRALVLAPTRELVEQVADNLQQYAHFTSLTIAAVYGGVKHSSQANK 148 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G DVL+ TPGR+L+H G + + +E LV+DEADRMLDMGF+ I + + + Sbjct: 149 LQAGLDVLVATPGRLLEHVELGNINLQQVEFLVLDEADRMLDMGFVGEISKLLNGMGKKP 208 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q L FSAT+T + +++ L P + V+ ++ A+T+EH ++K L +L Sbjct: 209 QILFFSATLTQSVTTLAKEILARPLSVAVSKRNAVADTVEHLLYPV--DQARKYELFMEL 266 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L++ + + ++F + ++ L ++L++ IH Q +R + L FKEG +Q+ Sbjct: 267 LRTHNWFQV-MVFSSTREEADKLINALKEDNVEGAVIHSEKTQGARRRALKEFKEGKLQV 325 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+++AARGLDI + +V N D+P E+Y+HR+GRTGRAG G A +LV+ D + Sbjct: 326 LVATEVAARGLDIQGLDYVVNLDLPFFIEDYVHRVGRTGRAGSKGIAISLVSASDEPKVA 385 Query: 359 AIEKLIEKKV 368 IEK I K+ Sbjct: 386 LIEKAIGTKI 395 >gi|281424310|ref|ZP_06255223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris F0302] gi|281401579|gb|EFB32410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris F0302] Length = 544 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 233/373 (62%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + K TP+Q IP +L+ +DV G+AQTGTGKTA+++LP+L Sbjct: 3 MYFDELELNDNVLDALYDMRFEKCTPVQENCIPEILKGNDVLGVAQTGTGKTAAYLLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116 + L+ G LI+ PTRELA Q+ + +G N +VA+ G G ++ + Sbjct: 63 SKLDDGGYPDNAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQEL 122 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GAD++I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 123 KSLQLGADIVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQ 182 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 QT++FSATM D+++ +++ L+NPK I++ S AE I+ Y ++K +++ Sbjct: 183 NCQTIMFSATMPDKIEDLAKTLLKNPKVIKLAV-SKPAEKIKQSAYVCYE--TQKMGIIK 239 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + ++ D ++ IIFC K V + +L+++ + +H ++DQ +R ++ FK G Sbjct: 240 DIFKNGD-LERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQF 298 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R G A T V+++DI + Sbjct: 299 DVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSEDDIYY 358 Query: 357 IDAIEKLIEKKVD 369 IEK +EK+V+ Sbjct: 359 FQQIEKFLEKEVE 371 >gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547] gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547] Length = 499 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 153/435 (35%), Positives = 237/435 (54%), Gaps = 31/435 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+ P +V A+ G P PIQ T+P+ L R D+ G A+TGTGKT F +PM+ Sbjct: 6 FADFGIHPDIVAALEAGGITHPFPIQSMTLPVALDRQDIIGQAKTGTGKTLGFGVPMVQN 65 Query: 63 L----EKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + +G R P+ L + PTRELA QVA + E+ + V + GG +E Q Sbjct: 66 VVGPNHEGYDQLERPGAPQALAVAPTRELALQVATDLERAAARLGVRVLTVYGGRAYEPQ 125 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + LERG ++++ TPGR++D RG L + + +V+DEAD MLD+GF+P ++ + ++ P Sbjct: 126 IEALERGVEIVVGTPGRLIDLAERGHLTLAHARTVVLDEADEMLDLGFLPDVEKLLAMTP 185 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQYSKK 231 R T+LFSATM + ++ ++ P I EV +T E I+ +A K Sbjct: 186 AGRHTMLFSATMPGAVVAMARRYMNQPTHIRAMEEVPGAGATVEAIDQFVYRAHAM--DK 243 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ +LLQS+ I+F K+ + L ++GF+ AIHG++ Q +R + L F Sbjct: 244 VEMVARLLQSEGRGLT-IVFTRTKRTAAKVAEQLVERGFAAAAIHGDLGQGAREQALRAF 302 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++VA+D+AARG+D+ DV HV N+ P + Y+HRIGRTGRAG++G A TLV Sbjct: 303 RTGKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRIGRTGRAGKNGVAVTLVDW 362 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 +D+ I + +E P E + H +A + IP + TG + Sbjct: 363 DDLHRWAVINRALEL----------GAPEPAETYSTSAHFYA--DQRIPAEVTG-----E 405 Query: 412 NYSSQKSHIPLKESE 426 S+Q++ LK E Sbjct: 406 LPSAQRTRAGLKAEE 420 >gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144] gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144] Length = 528 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 156/412 (37%), Positives = 233/412 (56%), Gaps = 25/412 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S K V + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 22 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 81 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ K + V + GG+P E Q K L+R Sbjct: 82 KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 137 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L I L++DEAD M++MGFI ++ I +P RQT Sbjct: 138 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 197 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q++ + F++ PK I+ + I+ + T + +K L Sbjct: 198 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 255 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 256 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 314 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 315 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 374 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402 E D N + +L PP K D Q+ +R+N P Q+ Sbjct: 375 E-------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 419 >gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1] gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1] Length = 555 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 150/374 (40%), Positives = 220/374 (58%), Gaps = 16/374 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ ++V A+ + G + IQ T+PL L D+ G A+TG GKT F +P+L Sbjct: 40 FAELGVRDEIVRALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHR 99 Query: 63 LEKGRARVR----MPRTLILEPTRELAAQVADNFE---KY--GKNYNLTVALLIGGIPFE 113 + G PR L++ PTREL QV + E KY G+ L V + GG P+E Sbjct: 100 ISSGTTGTAALDGTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYE 159 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L++GADV++ TPGR+LD N+G L++ +E+LV+DEAD MLD+GF+P I+ I + Sbjct: 160 TQIATLQKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGM 219 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVATYAQYSK 230 VP RQT+LFSATM + ++ FL P I +A T +H + A Sbjct: 220 VPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIY---RAHALD 276 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K ++ ++LQ++ +IF K+ + L ++GFSV ++HG+++Q +R K L Sbjct: 277 KAEMVARVLQAEGRGAT-MIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKA 335 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 F+ G I ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G A TLV Sbjct: 336 FRTGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVD 395 Query: 351 KEDIKHIDAIEKLI 364 +DI I+K + Sbjct: 396 WDDIPRWQLIDKAL 409 >gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605] gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605] Length = 607 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 221/371 (59%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G S ++ + D GY +P+PIQ P ++ D+ G AQTGTGKTA+F LP+L Sbjct: 59 FAGFGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE G+ + P+ L+L PTRELA QVA++F+ Y + +L V + GG F +Q L R Sbjct: 119 LESGQ---KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRR 175 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR++DH +G L + + LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVV 235 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S+ +L++P + + T + I + + K LQ++L + Sbjct: 236 LFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPH--KLEALQRVLDA 293 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K + + +LE G V ++G++ Q R + + + G++ ++VA Sbjct: 294 CGS-EGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 352 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A V + + I +E Sbjct: 353 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLE 412 Query: 362 KLIEKKVDWLN 372 + + ++ + Sbjct: 413 RATGQPIEAME 423 >gi|307729303|ref|YP_003906527.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1003] gi|307583838|gb|ADN57236.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003] Length = 530 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/388 (38%), Positives = 226/388 (58%), Gaps = 32/388 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLS VV A+ AGY PTP+Q + +P + D+ + TG+GKTA+F+LP + Sbjct: 50 FASLGLSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 109 Query: 61 -TILEK--------------GRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNY-N 100 + L+K GR R V P L+L PTRELA QV YGK+ Sbjct: 110 FSQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 169 Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 L ++GG+ + Q L + ++L+ TPGR++DH RG++ ++ ++ILV+DEADRMLD Sbjct: 170 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 229 Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216 MGFI I+ I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ ++ A+T Sbjct: 230 MGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQT 289 Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276 + + K LL LL+ + I+F K + L L GF A+H Sbjct: 290 VHYV-----DDRDHKDRLLDHLLRDAG-LDQAIVFTATKMDADQLAGRLADAGFESAALH 343 Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336 G++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGRT Sbjct: 344 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 403 Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 GRAGR G A +LV + + IE+ + Sbjct: 404 GRAGRSGIAVSLVHHAEQGALKRIERFV 431 >gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950] Length = 452 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 216/371 (58%), Gaps = 10/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++V A+ + G P IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 12 FAQLGVRDEIVRALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIPFE 113 + G A + PR LI+ PTREL QV D+ K+ L+V + GG P+E Sbjct: 72 ITSGTAARPLNGTPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYE 131 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 AQ + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I Sbjct: 132 AQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ++LFSATM D + ++ F+ P I P S A A A K Sbjct: 192 IPVDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYAYRAHALDKVE 251 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L+ ++LQ++ +IF K+ + L ++GF+V A+HG++ Q +R K L F+ Sbjct: 252 LVSRILQAEGRGAT-MIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRT 310 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I ++VA+D+AARG+DI DV HV N+ +P + Y+HRIGRTGRAG+ G A TLV ++ Sbjct: 311 GDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDE 370 Query: 354 IKHIDAIEKLI 364 + I+K + Sbjct: 371 LTRWALIDKAL 381 >gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01] gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01] Length = 673 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 222/370 (60%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L L+ ++ A+ G+V PTPIQ IPL+L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFNELALNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 + + + P+ +I+ PTRELA QVA + G++ N L V + GG Q + L Sbjct: 66 NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA +++ TPGR+ D R +L ++ V+DEAD ML MGF+ + I P + Q Sbjct: 123 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++ + + +L+NP R++V + T + + + +K + +LL Sbjct: 183 RVLFSATMPPMVKTIVDRYLRNPARVDVAGTNHTVDKVAQNYWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T + I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEETDAS-IVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + +++ Sbjct: 360 IERVTKSQME 369 >gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905] gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905] Length = 513 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 229/380 (60%), Gaps = 13/380 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L +S + +V G+ + TPIQ TI ++ DV G AQTGTGKTA+F +P++ Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ ++ L++ PTRELA QV++ K G + + + + GG Q + L+ Sbjct: 63 KIDPKNPNIQ---ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKN 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGRI+DH NR L + +++ LV+DEAD ML+MGFI I +I VP RQTL Sbjct: 120 KPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAERQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++E F+++P+ +++ T + I+ FV + + +K +L +LL Sbjct: 180 LFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAER--EKFDVLSRLLNV 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIF K+ V L +L +G+ IHG++ Q R+ +L FKE I ++VA Sbjct: 238 HQP-ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVE 356 Query: 362 KLIEKKVDWLNGDLSSLNPP 381 + +K+ ++ L PP Sbjct: 357 ETTKKR-------MTPLRPP 369 >gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333] gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM 12333] Length = 589 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 211/367 (57%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV G+ PTPIQ IP +L D+ G+AQTGTGKTA+F LP+L Sbjct: 22 FDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLLAA 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121 ++ A V+ L+L PTRELA QV+D + + V + GG F Q + LER Sbjct: 82 VDPQLAAVQ---ALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLER 138 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D RG L ++ + LV+DEAD ML MGF + I + P T+Q Sbjct: 139 GAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVA 198 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++KV+E L+NP+ I V ++ + + Y K L ++L + Sbjct: 199 LFSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTY--AIVPYRNKAEALSRVLAT 256 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D I+F ++ + +L +G + +I G++ QR R +I+ + G + ++VA Sbjct: 257 SDA-DAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVA 315 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V NFDVP E Y+HRIGRTGRAGR G A T + ++ + IE Sbjct: 316 TDVAARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTIE 375 Query: 362 KLIEKKV 368 ++ ++ Sbjct: 376 RVTGSRL 382 >gi|310644435|ref|YP_003949194.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2] gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2] Length = 525 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 220/363 (60%), Gaps = 6/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LG+ V A+ + G PTP+Q ++IPL+++ DV A TGTGKT +F+LP+L Sbjct: 3 NFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFE-KYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R P+ L++ PTRELA Q+ + + +L++ + GG E Q +KL+ Sbjct: 63 KLNLDK---RHPQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA ++I TPGR+LDH RG L + I++LV+DEAD+ML MGF+ ++ I VP+ RQT Sbjct: 120 GGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++K++ ++ P ++V + SS + V K+ AL+ L Sbjct: 180 MLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDML-- 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D +IFC K+ L L++ GF +HG++ Q R +++ F+E +QL+V Sbjct: 238 NTDRPYLAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P AE+YIHRIGRTGRAG G A TL D+ + I Sbjct: 298 ATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNI 357 Query: 361 EKL 363 +++ Sbjct: 358 QRV 360 >gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus D139] gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus D139] Length = 506 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 63 KV-VGKQGVQ---SLILAPTRELAMQVAERLREFSRGQGVQVVTVFGGMPIERQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E +K +S+L PP K Sbjct: 356 EDANGRK-------MSALRPPHRK 372 >gi|229133365|ref|ZP_04262193.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196] gi|228650038|gb|EEL06045.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196] Length = 450 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 154/423 (36%), Positives = 244/423 (57%), Gaps = 28/423 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ DV G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDVIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ +++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K V L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------HNHARKNNPIPQKSTGFDRRKKNY 413 EK +L P+++ I Q N P P+KS + +R Sbjct: 360 EK--------------TLGAPIQREIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSRE 405 Query: 414 SSQ 416 S+ Sbjct: 406 GSR 408 >gi|197334079|ref|YP_002154825.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11] gi|226739236|sp|B5FF87|RHLB_VIBFM RecName: Full=ATP-dependent RNA helicase rhlB gi|197315569|gb|ACH65016.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11] Length = 432 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 152/385 (39%), Positives = 228/385 (59%), Gaps = 13/385 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58 +FADLGL P+V+ + G++K TPIQ K +P++L D+ G AQTGTGKT +F+ Sbjct: 10 NFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFN 69 Query: 59 --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + T +GR ++ PR +I+ PTRELA Q+ ++ E + L AL GG +E Q Sbjct: 70 HLLTTPAPEGR-KITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQ 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + +E+G D+LI T GRI+D + +G + I+ +V+DEADRM D+GFI I+ I +P Sbjct: 129 QVIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPA 188 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233 R +LFSAT++ +Q+++ +Q P+ + V T I E F Y K A Sbjct: 189 PTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELF---YPSNDHKMA 245 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LLQ L++ ++ IIF N K ++ L V + G++ Q+ R +IL F + Sbjct: 246 LLQTLIE-EEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQ 304 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G + ++VA+D+AARGL IP V HVFNFD+PN AE+Y+HRIGRTGRAG G + + +E Sbjct: 305 GNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEY 364 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE+ IE + + D S+L Sbjct: 365 AINLPAIEEYIEHSIPQSDYDASAL 389 >gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 506 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 63 KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E +K +S+L PP K Sbjct: 356 EDANGRK-------MSALRPPHRK 372 >gi|302327262|gb|ADL26463.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp. succinogenes S85] Length = 739 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 220/370 (59%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLSP+V+ AV AGY P+PIQ K IP +LQ ++ G AQTGTGKTA+F LP+L+ Sbjct: 63 FDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLSR 122 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 + M L+L PTRELA QV+D ++Y K N+TV + GG Q + L+R Sbjct: 123 INFNGRETSM---LVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKR 179 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 A +++ TPGR++DH RG + + ++ +V+DEAD MLDMGF+ ++ I +P Q Sbjct: 180 KASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRA 239 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D ++K+ + L + + ++T E I C + K L ++L+ Sbjct: 240 LFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENI--CQRYLLVKNEHKIEALARVLEG 297 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ +IF K+N + LE +GF+V ++G++ Q R + ++ K G + ++VA Sbjct: 298 EE-FDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVA 356 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ + V N+D+P E+Y+HRIGRTGRAGR G A + + + + IE Sbjct: 357 TDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIE 416 Query: 362 KLIEKKVDWL 371 K + +D + Sbjct: 417 KATRQPIDVM 426 >gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353] gi|224953734|gb|EEG34943.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353] Length = 529 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 220/368 (59%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L + P+++ AV + G+ +PIQ K IP+ L DV G AQTGTGKTA+F +P I Sbjct: 6 FTELDIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIP---I 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120 L+K +++ P+ ++L PTRELA QVAD K K Y +V +L GG Q + L+ Sbjct: 63 LQKVDPKLKKPQAIVLCPTRELAIQVADEIRKLAK-YMSSVKILPIYGGQEISKQIRSLK 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G ++I TPGR++DH R + +NI +V+DEAD MLDMGF I+ I + VP RQT Sbjct: 122 AGVQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILNGVPEERQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM + +++ + QNP+ I+V T I + + K +L +LL Sbjct: 182 MLFSATMPKPIMELARAYQQNPEIIKVIRKELTVPNITQYYYEVRPK--NKSEVLSRLLD 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D K ++FCN KK V L L+ +G+ +HG++ Q R +++ F+ G ++V Sbjct: 240 IYDP-KLSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSGKTDILV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G AF+ V ++ + I Sbjct: 299 ATDVAARGIDVDDVDAVFNYDLPQDEEYYVHRIGRTGRAGRTGMAFSFVVGREVYKLKDI 358 Query: 361 EKLIEKKV 368 + + K+ Sbjct: 359 RRYCKAKI 366 >gi|237796237|ref|YP_002863789.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Ba4 str. 657] gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Ba4 str. 657] Length = 524 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 236/384 (61%), Gaps = 7/384 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L L+ V+ A+ G+ P+ IQ K+IP+VL+ DV AQTGTGKT +F P+++ Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + + + + L+L PTRELA Q+ D ++ + V + GG E Q K ++ Sbjct: 65 AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSEYSKTKVLPVYGGESIERQIKDIKS 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR+LDH NR L + I+ L++DEAD ML+MGFI I+ I +QT+ Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++K++ N+++ + + I + S T + I + A + K L +++ Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAV--KNKDKLEALCRIID 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ ++ IIFC K+ V L +++ +G++V +HG++ Q R+ L FK+ T+ +V Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+D+P AE+Y+HRIGRTGRA + G A++LV ++ I I Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++ + K+ +L +L LEK Sbjct: 361 ERITKSKIK--KKELPTLEDILEK 382 >gi|145569766|gb|ABP78872.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501] Length = 526 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +T Sbjct: 140 FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQ 199 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LE + R PR LI+ PTREL Q+A++ K L V +GG+ F+ Q K+ Sbjct: 200 LLETPPPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 259 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 260 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 319 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + NP +E+ + ++T+E A S K LL Sbjct: 320 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAG--SDKYKLL 377 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ ++F N+K V + L K G S + G++ Q R++ L F+EG Sbjct: 378 YNLI-TQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 436 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ + + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 437 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAF 496 Query: 356 HIDAIEKLIEKKV 368 + IE LI +K+ Sbjct: 497 ALPPIEALIGRKI 509 >gi|161521775|ref|YP_001585202.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC 17616] gi|189352063|ref|YP_001947690.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC 17616] gi|221210620|ref|ZP_03583600.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1] gi|160345825|gb|ABX18910.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans ATCC 17616] gi|189336085|dbj|BAG45154.1| ATP-independent RNA helicase [Burkholderia multivorans ATCC 17616] gi|221169576|gb|EEE02043.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1] Length = 464 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 150/392 (38%), Positives = 225/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P ++ + GYV TPIQ ++P+ L HD+ A+TG+GKTA+F L +L+ Sbjct: 9 FSTLPLTPAMLANLEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ +IL PTRELA QVA + + N+ V L GG P Q + LE Sbjct: 69 LDARRFDVQ---AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL++PK +++ ++ + + T + +L + Sbjct: 186 LFSATYPDGIAKLSQQFLRSPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLNHYRP 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 246 VST----IAFCNTKQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + AIE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIE 361 Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387 + ++ V+W + L PP+E + I Sbjct: 362 QAQKRDVEWRPLSELTPASDAPLLPPMETLQI 393 >gi|332826518|gb|EGJ99347.1| hypothetical protein HMPREF9455_00380 [Dysgonomonas gadei ATCC BAA-286] Length = 371 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 220/365 (60%), Gaps = 5/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + ++ A+ + GY PTPIQ IP+VL+ D+ G+AQTGTGKTA+F +P++ Sbjct: 1 MTFQELNIIEPILRALQEKGYTNPTPIQEDAIPVVLKNQDMLGLAQTGTGKTAAFSIPII 60 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + R R R LI+ PTRELA Q+ D +Y L ++ GG+ +AQ + Sbjct: 61 QHLYQNKISGRKREIRALIITPTRELAIQINDCIREYTLYTGLRHCVIFGGVKQKAQTDE 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD N+G + +N I V+DEADRMLDMGFI I+ + +P + Sbjct: 121 LHKGIDILVATPGRLLDLMNQGFVSLNAITHFVLDEADRMLDMGFIHDIKRLLPKLPKDK 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSATM + +S + L+NP R+EV SS + IE + + K LL L Sbjct: 181 QTLFFSATMPPAIAALSRSILRNPVRVEVAPVSSVVDVIEQS--VYFVEKQDKKDLLINL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D ++ ++F K + L K G AIHGN Q +R + L+NFK ++ Sbjct: 239 LK-KDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALANFKSHKTRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ + V N+D+P+ E Y+HRIGRTGRAG G A T A+++ + Sbjct: 298 LIATDIAARGIDVNQLELVINYDLPDVPETYVHRIGRTGRAGHSGTALTFCAEDERPMLK 357 Query: 359 AIEKL 363 I+KL Sbjct: 358 DIQKL 362 >gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635] gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635] Length = 506 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 63 KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAAQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E +K +S+L PP K Sbjct: 356 EDANGRK-------MSALRPPHRK 372 >gi|172087635|ref|YP_203439.2| ATP-dependent RNA helicase [Vibrio fischeri ES114] gi|226739701|sp|Q5E8U5|RHLB_VIBF1 RecName: Full=ATP-dependent RNA helicase rhlB gi|171902232|gb|AAW84551.2| ATP-dependent RNA helicase [Vibrio fischeri ES114] Length = 432 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 152/385 (39%), Positives = 228/385 (59%), Gaps = 13/385 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP--- 58 +FADLGL P+V+ + G++K TPIQ K +P++L D+ G AQTGTGKT +F+ Sbjct: 10 NFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFN 69 Query: 59 --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + T +GR ++ PR +I+ PTRELA Q+ ++ E + L AL GG +E Q Sbjct: 70 HLLTTPAPEGR-KITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQ 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + +E+G D+LI T GRI+D + +G + I+ +V+DEADRM D+GFI I+ I +P Sbjct: 129 QVIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPA 188 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCA 233 R +LFSAT++ +Q+++ +Q P+ + V T I E F Y K A Sbjct: 189 PTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELF---YPSNDHKMA 245 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LLQ L++ ++ IIF N K ++ L V + G++ Q+ R +IL F + Sbjct: 246 LLQTLIE-EEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQ 304 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G + ++VA+D+AARGL IP V HVFNFD+PN AE+Y+HRIGRTGRAG G + + +E Sbjct: 305 GNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEY 364 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE+ IE + + D S+L Sbjct: 365 AINLPAIEEYIEHSIPQSDYDASAL 389 >gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] Length = 767 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 224/371 (60%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV + G+ PT IQ IP++L+ DV G+AQTGTGKTA+F LP+L Sbjct: 129 FDDLGLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAH 188 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 ++ + V+ L+L PTRELA Q A E + K+ + VA + GG + Q K LE Sbjct: 189 IDPEKREVQ---ALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALEG 245 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+D +RG L ++ + V+DEAD ML MGF ++ I S VP R + Sbjct: 246 GAQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISA 305 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++V+E L + + + ++ P++T T++ + A + K AL + L + Sbjct: 306 LFSATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMY-AVVPERHKIGALARVLAVT 364 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++F + +L L +G + A+ G++ Q+ R K+++ ++GT+ ++VA Sbjct: 365 E--AQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVA 422 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V NFDVP + Y+HRIGRTGRAGR G++ T V ++ + IE Sbjct: 423 TDVAARGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRIE 482 Query: 362 KLIEKKVDWLN 372 K +++ + Sbjct: 483 KQTGSRMEQIE 493 >gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14] gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14] Length = 633 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 218/364 (59%), Gaps = 7/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IPL+L D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNSTLLSALNEMGFVTPTPIQSAAIPLLLAGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ + + P+ +++ PTRELA QVA + GKN L V + GG Q + L Sbjct: 66 NKLDLTQYK---PQAIVMAPTRELAIQVAAEIKTLGKNIKGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ V+DEAD ML MGF+ + I P T Q Sbjct: 123 KSGAHIIVGTPGRVKDLITRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQSPETAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++ + + FL++P R++V + T +E + +K + +LL Sbjct: 183 RVLFSATMPPIVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKL 363 IE++ Sbjct: 360 IERV 363 >gi|323706324|ref|ZP_08117890.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534376|gb|EGB24161.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 513 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 223/365 (61%), Gaps = 11/365 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF +L L+ K++ A+ D G+ +P+ IQ + IP++L+ DV G A+TGTGKT ++ P++ Sbjct: 1 MDFKELHLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +V L+L PTRELA QV D + GK + + + GG+ + Q K ++ Sbjct: 61 NNFSSNDGKVF---CLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+++ TPGR+LD R L + ++ LVIDEAD M+DMGFI I+ I + RQT Sbjct: 118 RGVDIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKERQT 177 Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237 ++FSATM DE++ +++ +++ + K I + + T T++H + V ++ C +L Sbjct: 178 MMFSATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRIL-- 235 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + IIFC KK V L +++ +G++V +HG++ Q R+ L FKEG + Sbjct: 236 ---DVEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILD 292 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARG+DI +V HV N+++P E+Y+HRIGRTGRA R G A+TLV + + Sbjct: 293 FLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPAL 352 Query: 358 DAIEK 362 IEK Sbjct: 353 KRIEK 357 >gi|313202644|ref|YP_004041301.1| dead/deah box helicase domain protein [Paludibacter propionicigenes WB4] gi|312441960|gb|ADQ78316.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes WB4] Length = 621 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 230/368 (62%), Gaps = 8/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPM 59 M F +L L ++ A+ + GY +P P+Q KTIP +L Q D+ +AQTGTGKTA+F LP+ Sbjct: 1 MTFRELNLKDDILSAIEELGYAQPMPVQEKTIPFMLEQTADLVALAQTGTGKTAAFGLPV 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L +++ GR +V+ L+L PTREL Q+A++ + Y KN + + + GG Q ++ Sbjct: 61 LNMIDAGRKQVQ---ALVLAPTRELCIQIANDLKGYSKNMRGMRIVPVYGGEDIRTQLRQ 117 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ +++ TPGR++D RGK+ + I+ LV+DEAD ML+MGF I+ I P TR Sbjct: 118 LDTAPQIIVATPGRLIDLIERGKIELGAIDFLVLDEADEMLNMGFKEDIETILERTPETR 177 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +T+LFSATM E+ +++ +++N + I V T ++ +E +EH + + A+ ++ +L+++ Sbjct: 178 RTMLFSATMPKEIANIAKRYMKNYEEITVGTKNAGSENVEHIYYVSQAR--QRYLVLKRI 235 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + GI+FC ++ + L G++ A+HG++ Q R ++ F+ IQL Sbjct: 236 VDLNPDIY-GIVFCRTRQETKEVADKLMHDGYNADALHGDLSQAQRDNVMQKFRIRNIQL 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ D+ HV N+++P+ E Y HR GRTGRA + G A +++ ++ I Sbjct: 295 LVATDVAARGLDVSDLTHVINYNLPDDVEVYTHRSGRTGRANKKGIAVSIIHSKERFKIK 354 Query: 359 AIEKLIEK 366 IE+++ K Sbjct: 355 DIERMLRK 362 >gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7] Length = 526 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 148/376 (39%), Positives = 227/376 (60%), Gaps = 12/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ +++ AV + G+ + TPIQ K IP V+ D+ G AQTGTGKTASF +PML Sbjct: 6 FEDLGVDERILRAVTEMGFEEATPIQAKAIPEVMTGQDIIGQAQTGTGKTASFGIPMLQK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ V+ ++L PTRELA Q AD K K + + V + GG Q + L+ Sbjct: 66 VDPKNKHVQ---AIVLCPTRELAIQSADEIRKLAKFMHGIKVLPIYGGQDIVKQIRSLKT 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G VLI TPGR++DH R + +++++I+V+DEAD ML+MGF I+ I S P RQTL Sbjct: 123 GVQVLIGTPGRVMDHMRRHTIKLDDLKIVVLDEADEMLNMGFREDIETILSQTPEERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ + +N K ++V T IE + + K +L +LL Sbjct: 183 LFSATMPQPIMEIARTYQKNAKIVKVVKRELTVANIEQYYYEVRPK--NKEEVLSRLLDI 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++FCN K+ V L L+ +G+ +HG++ Q+ R ++++ F+ G +++VA Sbjct: 241 YNPALS-VVFCNTKRQVDELVEGLKGRGYFAEGLHGDMKQQQRDRVMNGFRNGRTEILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAG++GKAFT + + + I+ Sbjct: 300 TDVAARGIDVDDVDAVFNYDLPQDDEYYVHRIGRTGRAGKNGKAFTFITGREFYKLKDIQ 359 Query: 362 -----KLIEKKVDWLN 372 K+I K+V LN Sbjct: 360 RYCRTKIIAKQVPSLN 375 >gi|261409742|ref|YP_003245983.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. Y412MC10] gi|261286205|gb|ACX68176.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10] Length = 538 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 153/420 (36%), Positives = 243/420 (57%), Gaps = 22/420 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LG+ + V + + G +PTP+Q ++IPL+LQ DV A+TGTGKT +F+LP+L Sbjct: 13 NFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQ 72 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKKL 119 ++ RA P+ LI+ PTRELA Q+ + +K G+ + + + GG E Q +KL Sbjct: 73 HIDPKRA---YPQALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKL 129 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E G ++I TPGR+LDH RG L + ++ LV+DEAD+ML MGF+ ++ + +P+ RQ Sbjct: 130 EGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQ 189 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQL 238 T+LFSATM +++++ N++ P I + S E I+ V SK+ AL + Sbjct: 190 TMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVEC-TDRSKQDALRAMI 248 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + IIFC K+ L +L G+ +HG++ Q R ++ F+E +QL Sbjct: 249 EEHNPFLA--IIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQL 306 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ V HVFN+D+P+ E+YIHRIGRTGRAG G A T A +D+ + Sbjct: 307 LVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGKDLNDLQ 366 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 IE+ I +++ + D ++ R+++ + TG ++ +N SS +S Sbjct: 367 RIEEGISQRLKRVRYDSAA-------------GSLRESSGGSGRDTGRPKKARNVSSLES 413 >gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228] gi|81843521|sp|Q8CRP6|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679 gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228] Length = 509 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 156/412 (37%), Positives = 233/412 (56%), Gaps = 25/412 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S K V + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ K + V + GG+P E Q K L+R Sbjct: 63 KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKR 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q++ + F++ PK I+ + I+ + T + +K L Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK----------IDIAQHNHARKNNPIPQK 402 E D N + +L PP K D Q+ +R+N P Q+ Sbjct: 356 E-------DVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQR 400 >gi|300692366|ref|YP_003753361.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia solanacearum PSI07] gi|299079426|emb|CBJ52099.2| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia solanacearum PSI07] Length = 471 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 149/392 (38%), Positives = 221/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P V+ ++ GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 16 FSTLALAPAVLANLVQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QV + + N+ V L GG P Q LE Sbjct: 76 LDARRFDVQ---AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEH 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 133 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S L+NPK +++ ++ + + T + LL + + Sbjct: 193 LFSATYPDGIAKLSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDERLHAVGLLLKHYRP 252 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K+ NL L QGF A+HG ++QR R ++L F + ++VA Sbjct: 253 VSTLA----FCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + +IE Sbjct: 309 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGSIE 368 Query: 362 KLIEKKVDWL------NGDLSSLNPPLEKIDI 387 + + ++V+W G + L PP+E + I Sbjct: 369 QALGREVEWHRLAELDTGSDAPLLPPMETLQI 400 >gi|332667550|ref|YP_004450338.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336364|gb|AEE53465.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 516 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 147/374 (39%), Positives = 233/374 (62%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F++L LS +V A+ D G+ + TPIQ + IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 4 LNFSELALSQEVQSAINDMGFAEATPIQSEAIPHLLNGKDLIGQAQTGTGKTAAFGIPLL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ++ R ++L PTRELA QVA+ K K L ++ + GG + Q K+L Sbjct: 64 ESID---CSTREVAAIVLCPTRELAVQVAEELRKLAKYKKGLFISTIYGGDSIQRQLKEL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G V++ TPGR++DH R L +++I++ V+DEAD ML+MGF I+N+ + +P TRQ Sbjct: 121 KAGPQVVVGTPGRVMDHLQRKTLRLDHIQMAVLDEADEMLNMGFREDIENVLNQMPETRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++++ F ++P ++V T +I+ + Q K A++ +L+ Sbjct: 181 TVLFSATMPRPILEIAKRFQKSPIHVKVVKEELTNASIDQIYYDIPVQ--AKEAVIARLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++ I+F N KK V +L L G S AIHG+++Q R +L+ F+ G + ++ Sbjct: 239 EYYD-LQRVIVFANMKKTVDDLTEGLNLLGISAKAIHGDLNQNQRNAVLTAFRGGAVNVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHID 358 VA+D+AARG+D+ V VFN+D+P AE Y+HRIGRTGRAG+ GK+F+ V + D + Sbjct: 298 VATDVAARGIDVSSVDGVFNYDLPYDAEYYVHRIGRTGRAGKLGKSFSFVTGRNDRYRLR 357 Query: 359 AIEKLIEKKVDWLN 372 IE + ++D N Sbjct: 358 DIEDFSKVRIDRHN 371 >gi|325275059|ref|ZP_08141046.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51] gi|324099808|gb|EGB97667.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51] Length = 483 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 227/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS +V+ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +++ Sbjct: 96 FHDFKLSSEVMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 155 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L++ A + PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 156 LQQTPAPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 215 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 275 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + NP +E+ + +ET+E A S K LL Sbjct: 276 SERQTLLFSATFTEDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 333 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L + G + + G++ Q R++ L NF+EG Sbjct: 334 YNLV-TQNRWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGR 392 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG +G + + ++D Sbjct: 393 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTNGVSISFAGEDDSY 452 Query: 356 HIDAIEKLIEKKV 368 + AIE+L+ +K+ Sbjct: 453 QLPAIEELLGRKI 465 >gi|229065471|ref|ZP_04200719.1| ATP-dependent RNA helicase [Bacillus cereus AH603] gi|228715789|gb|EEL67561.1| ATP-dependent RNA helicase [Bacillus cereus AH603] Length = 450 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 153/423 (36%), Positives = 244/423 (57%), Gaps = 28/423 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ +++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K V L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------HNHARKNNPIPQKSTGFDRRKKNY 413 EK +L P+++ I Q N P P+KS + +R Sbjct: 360 EK--------------TLGAPIQREIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSRE 405 Query: 414 SSQ 416 S+ Sbjct: 406 GSR 408 >gi|298345284|ref|YP_003717971.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063] gi|315655703|ref|ZP_07908601.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333] gi|298235345|gb|ADI66477.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063] gi|315489767|gb|EFU79394.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333] Length = 525 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 218/371 (58%), Gaps = 9/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD + P++V A+ D G + P PIQ T+P+ L R D+ G A+TGTGKT F +P+L Sbjct: 28 FADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILHD 87 Query: 63 L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QVA + + + GG+ F++Q Sbjct: 88 IIGPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFDSQ 147 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +G +V++ TPGR++D N+G L + I LV+DEAD MLDMGF+P ++ + S +P Sbjct: 148 IEALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQIP 207 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ ++ P I P+ +++T+ Y +S K + Sbjct: 208 PHRHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYRVHSLNKTEV 267 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ+++ IIF K+ L L ++GF+ AIHG++ Q +R + L F+ G Sbjct: 268 IARILQARNRGLT-IIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHG 326 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N++ P + YIHRIGRT RAG G A T + ED+ Sbjct: 327 KVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFIDWEDL 386 Query: 355 KHIDAIEKLIE 365 I + ++ Sbjct: 387 TRWRVINRTLD 397 >gi|303242080|ref|ZP_07328571.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] gi|302590374|gb|EFL60131.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] Length = 499 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 144/362 (39%), Positives = 220/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+SP ++ A+ + G+ PT +Q K IP +L D+ +++TG+GKTA F + ML + Sbjct: 5 FNDLGISPPILKALEEMGFEAPTEVQSKAIPHILNHEDLIVMSKTGSGKTAVFGVSMLQM 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + P+ LIL PTRELA QV + +K K+ + + G + + L RG Sbjct: 65 ID---PKADGPQGLILTPTRELAVQVDNELKKMAKHLDHHTTAVYGQHSMNVEIQALRRG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++ TPGR DH + G L+ NI L++DEADRMLDMGF+ + I +P R TLL Sbjct: 122 ISIVTGTPGRAYDHIHTGNLITKNIRFLILDEADRMLDMGFLDQVVKIIRTLPKDRVTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ E++++ + +++ P IE+ + + T +TIE + Q +K L LL + Sbjct: 182 FSATIPPEIRRICKEYMKQPLTIEIKSQTKTVDTIEQIYYRIDNQ--QKNTELNHLLLIE 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ +IFCN K V + L ++G++ ++HG+I Q RMK + FK+G L+VA+ Sbjct: 240 RP-ESCMIFCNTKIAVDKVQSFLSRKGYACQSLHGDIPQARRMKTIQQFKQGDFHLLVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+ I ++ V N+DVP +NY+HRIGRTGRAG G+A TLV EDI + AIE+ Sbjct: 299 DVAARGIHIDNLSLVINYDVPLEKDNYVHRIGRTGRAGNGGRALTLVTSEDIMSLYAIEE 358 Query: 363 LI 364 I Sbjct: 359 HI 360 >gi|258648442|ref|ZP_05735911.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella tannerae ATCC 51259] gi|260851194|gb|EEX71063.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella tannerae ATCC 51259] Length = 484 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 234/369 (63%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LS V+ A+ D + K TP+Q + IP +L+ DV GIAQTGTGKTA+++LP+LT+ Sbjct: 9 FEDLALSDDVLDALYDMRFEKCTPVQARCIPPILEGRDVIGIAQTGTGKTAAYLLPLLTL 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKL 119 L++ L++ PTRELA Q+ + +G ++ + GG + +E + K L Sbjct: 69 LKQESHPTDAVNCLVMAPTRELAQQIDQALQGFGYYVDVNGVAVYGGNDGVRYEQERKSL 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RGAD++I TPGR+L H + G ++ LV+DEADRMLDMGF I I +P RQ Sbjct: 129 KRGADIVIATPGRLLTHLDLGTFDLSRTTHLVLDEADRMLDMGFSDDILKIVKHLPEQRQ 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM ++++++ + NP+ + + S AE I + + K A+++ L Sbjct: 189 TILFSATMPAKIRELAHKIMHNPEEVSIAI-SKPAENIRQSLF--ICKENDKTAIIKHLF 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + IIFC K+ V L +L+++G++V A+H +++Q+ R +++ FK G I ++ Sbjct: 246 ADQKPERV-IIFCGSKQKVKELNITLKRKGYNVEAMHSDLEQKQRDEVMLGFKAGRIDIL 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARG+DI D+ V N+DVP AE+Y+HRIGRT RAGR+G+A TLV ++D + Sbjct: 305 VATDIVARGIDIDDITLVINYDVPRDAEDYVHRIGRTARAGRNGRAVTLVGEKDRYALRN 364 Query: 360 IEKLIEKKV 368 IE+L++K++ Sbjct: 365 IEQLLDKEL 373 >gi|78355199|ref|YP_386648.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217604|gb|ABB36953.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 572 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 229/369 (62%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LS +V+ A+ D G+ + +PIQ +IP +L DV G AQTGTGKTA+F +P I Sbjct: 51 FADLPLSKEVLRAIQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKTAAFGIP---I 107 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 LE+ R + + ++L PTRELA QVA+ ++ ++V + GG P E Q + L R Sbjct: 108 LERIDPRDKATQAVVLCPTRELAIQVAEEVTTLARHKRGISVVPVYGGQPIERQVRALRR 167 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +RG + +N ++++V+DEAD MLDMGF I+ I + QT+ Sbjct: 168 GAQVIVGTPGRVMDHLDRGTMDINTVKMVVLDEADEMLDMGFRDDIEFILGKMEQEVQTV 227 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM + +++ +L+ P+ ++V T +IE + V + + C +L Sbjct: 228 FFSATMPRAILDMAQRYLKEPEFLKVTQKLLTVPSIEQIYFEVRPFQKLESLCRVLDVY- 286 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 K I+FC+ K V L +L+ +G+ +HGN++Q R ++++ F++G I ++ Sbjct: 287 ----NPKLTIVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDIL 342 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V V N+D+PN E+Y+HRIGRTGRAGR G+AFT V+ + + Sbjct: 343 VATDVAARGIDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGREFYKLRD 402 Query: 360 IEKLIEKKV 368 I++ + ++ Sbjct: 403 IKRFTKAQI 411 >gi|282866591|ref|ZP_06275633.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE] gi|282558493|gb|EFB64053.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE] Length = 537 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 221/373 (59%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F DLG+ + A+ G P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 21 FRDLGILTETAEALEAVGITSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 80 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRA P+ LI+ PTREL QV ++ GK N+ V + GG + Sbjct: 81 VTVPADVEAGRATPDRLTDAPQALIVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAY 140 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL +++I +LV+DEAD MLD+GF+P ++ I + Sbjct: 141 EPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSHIRVLVLDEADEMLDLGFLPDVERIIT 200 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KK 231 ++P RQT+LFSATM + ++ ++ P I +P T+++ Y +S K Sbjct: 201 MLPAKRQTMLFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTTQFVYRAHSMDK 260 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ++ + +IFC K+ ++ LE++GF+ A+HG++ Q +R + L F Sbjct: 261 PEMVSRILQAE-SRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAF 319 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TLV Sbjct: 320 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 379 Query: 352 EDIKHIDAIEKLI 364 +DI I K + Sbjct: 380 DDIPRWQLINKAL 392 >gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 627 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L+ ++ A+ + G+V PTPIQ +IPL+L D G AQTGTGKTA+F LP+L Sbjct: 7 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 + + + P+ +++ PTRELA QVA + G+N L V + GG Q + L+ Sbjct: 67 KVNLSQHK---PQAIVMAPTRELAIQVAAEMKTLGQNIKGLKVLEIYGGASIVDQMRALK 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+ D +R +L ++ + V+DEAD ML MGF+ + I P + Q Sbjct: 124 NGAHIVVGTPGRVKDLISRKQLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQR 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++++ + FL+NP+RI+V + T +E F +K + +LL+ Sbjct: 184 VLFSATMPPIVKEIVDRFLRNPERIDVAGENRTVSKVEQQFWVVKG--VEKDEAMSRLLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++DT I+F +++ L L +GF A+HG+I Q R + + + K G I ++V Sbjct: 242 TEDT-DASIVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + I Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTI 360 Query: 361 EKLIEKKVD 369 E++ + +++ Sbjct: 361 ERVTKSRME 369 >gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262086740|gb|ACY22708.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 43247] Length = 543 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 160/435 (36%), Positives = 234/435 (53%), Gaps = 35/435 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ ++V A+ D G IQ T+PL + D+ G A+TG GKT F +P+L Sbjct: 27 FAELGVDDRIVAALADDGKTHTFAIQELTLPLAMGGDDLIGQARTGMGKTFGFGVPLLHR 86 Query: 63 L----EKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-----------LTVALL 106 L E G RA PR LI+ PTREL QV + E K L + + Sbjct: 87 LAHAEESGLRALDNTPRALIIVPTRELCIQVTGDLEVAAKKLTDITLADGTVRPLKITSI 146 Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166 GG P+E+Q L G DV++ TPGR+LD +G L++ + +LV+DEAD MLD+GF+P Sbjct: 147 YGGRPYESQIADLRAGVDVVVGTPGRLLDLAQQGHLILGKVAVLVLDEADEMLDLGFLPD 206 Query: 167 IQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVA 223 I+ I S +P RQT+LFSATM + ++ FL P I +A T ++ + Sbjct: 207 IERIMSALPTPRQTMLFSATMPGPIVTLARTFLHRPTHIRAEHADDSAIHERTTQYVY-- 264 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 A K L+ ++LQ++ +IF K+ + L ++GF V A+HG++ Q + Sbjct: 265 -RAHALDKAELVARILQAEGRGAT-MIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVA 322 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R K L F++GTI ++VA+D+AARG+DI DV HV N+ +P +NY+HRIGRTGRAGR G Sbjct: 323 REKALKRFRDGTIDVLVATDVAARGIDIDDVTHVINYQIPEDDKNYVHRIGRTGRAGRTG 382 Query: 344 KAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403 A TLV +++ + I + L P + H R + IP+ + Sbjct: 383 IAVTLVDWDELHRWELINNAL------------GLGIPEPAETYSTSEHLRTDLSIPEST 430 Query: 404 TGFDRRKKNYSSQKS 418 TG K SS+K+ Sbjct: 431 TGRIVAPKRESSEKT 445 >gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824] gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium acetobutylicum EA 2018] Length = 528 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 223/369 (60%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L+ V+ A+ D G+ +P+ IQ + IP+V+ +D+ G AQTGTGKT +F P+++ Sbjct: 6 FSDLKLNSSVLKAIDDMGFEEPSKIQAEAIPVVIDGYDMIGQAQTGTGKTVAFGAPIISK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + K + +IL PTRELA Q+ D + K + V + GG E Q + ++RG Sbjct: 66 I-KDIDEKEGVQAIILTPTRELAIQITDELTRLSKYARVRVLPIYGGQSIERQMRAIKRG 124 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGRI+DH R + ++ ++ LV+DEAD MLDMGFI I+ I + RQT+L Sbjct: 125 VDVIVATPGRIMDHIKRKTVKLDKVKFLVLDEADEMLDMGFIDDIEGIIKNISGDRQTML 184 Query: 183 FSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM ++K++ N+++ K I + S T E I+ + V ++ C ++ + Sbjct: 185 FSATMPAPIKKLASNYMKKEVKHIAIIKNSLTVERIQQFYFEVKNKDKFEALCRIID--V 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +T IIFC K+ V L S++ +G++V +HG++ Q R+ L FKE I + Sbjct: 243 EEPETT---IIFCRTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDFL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V HV N+D+P E+Y+HRIGRTGRA G A++LV + I Sbjct: 300 VATDVAARGIDVHNVSHVINYDIPQDMESYVHRIGRTGRANAEGIAYSLVTPREYVMIKQ 359 Query: 360 IEKLIEKKV 368 IEK + K+ Sbjct: 360 IEKFTKSKI 368 >gi|298571703|gb|ADI87855.1| hypothetical protein AKSOIL_0347 [uncultured bacterium Ak20-3] Length = 527 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 145/372 (38%), Positives = 218/372 (58%), Gaps = 8/372 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D K+ + D G+ PTPIQ++ IP+VL+ D+ AQTGTGKTA+F LP+L Sbjct: 32 NFKDFPFDMKLQQVIADEGFSIPTPIQVRAIPIVLEGKDIIACAQTGTGKTAAFALPILH 91 Query: 62 IL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + + R P+ L+L PTRELA QV + F +G N + +IGG+ Q Sbjct: 92 KLVQDAQTEKQRSYHPKVLVLVPTRELALQVQETFAAFGHNLGVNSIAIIGGVSVGQQMV 151 Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L R + V++ TPGR+LD +G + +++I L++DEADRMLDMGFIP + I +P Sbjct: 152 NLRRRSPQVVVATPGRLLDILEQGGINLSSIHTLILDEADRMLDMGFIPDTKRIVKAIPK 211 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ+L+FSAT++ E+ +S+ + P I V ++AE IE + K ALL Sbjct: 212 ERQSLMFSATISSEVNALSKQIMNTPVHISVAPKRASAEGIEQLLYSVPG--DNKRALLF 269 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL++ D M IIF K L SL ++G IH Q +R + +F+ G + Sbjct: 270 HLLEN-DEMNRVIIFTRTKFGASKLSDSLIREGIRSKVIHSGKSQAARQSVWEHFRSGKL 328 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+DLA+RG+D+ + HV N+D+P+ AE YIHRIGRTGRA + G A + + + + Sbjct: 329 RVLVATDLASRGIDVDGISHVVNYDLPDCAETYIHRIGRTGRANKTGIALSFCSPDQRRL 388 Query: 357 IDAIEKLIEKKV 368 + AIE+ + K + Sbjct: 389 LTAIERHLGKTL 400 >gi|229011722|ref|ZP_04168904.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048] gi|229167295|ref|ZP_04295034.1| ATP-dependent RNA helicase [Bacillus cereus AH621] gi|228616171|gb|EEK73257.1| ATP-dependent RNA helicase [Bacillus cereus AH621] gi|228749519|gb|EEL99362.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048] Length = 450 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 153/423 (36%), Positives = 244/423 (57%), Gaps = 28/423 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ +++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K V L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------HNHARKNNPIPQKSTGFDRRKKNY 413 EK +L P+++ I Q N P P+KS + +R Sbjct: 360 EK--------------TLGAPIQRQIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSRE 405 Query: 414 SSQ 416 S+ Sbjct: 406 GSR 408 >gi|163755968|ref|ZP_02163085.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1] gi|161324139|gb|EDP95471.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1] Length = 411 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 229/368 (62%), Gaps = 8/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ ++ A+ + Y +PT +Q + IP++L + D+ AQTGTGKTA++ LP+L Sbjct: 1 MQFKELKLNKPIIRALFEKNYEEPTLVQERAIPVILTKKDIIVSAQTGTGKTAAYALPIL 60 Query: 61 TIL---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +L + + + + L++ PTRELA Q+ +NF+ Y K NL ++ GG E Q Sbjct: 61 QLLFDKQDAPKKGKKIKALVVCPTRELAIQIEENFQTYSKYTNLRTGVIFGGASIEPQKD 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+L+ TPGR+LD + + ++ +EILV+DEAD MLDMGFI ++ I L P Sbjct: 121 MLKKGIDILVATPGRLLDLHKQDVVNLDYVEILVLDEADLMLDMGFIDDVKKIERLCPDG 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +Q LLFSATM +++ ++ + L++P +EV+ SS A+ ++ V Y KK L Sbjct: 181 KQILLFSATMPYKVEHLANSILKSPAYVEVSPTSSAAKGVDQ--VLYYVPKPKKIELCLH 238 Query: 238 LLQSQDTMK-NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL ++T+K N IIF K V L +L + + V +IHG+ Q R + L+ FK+G Sbjct: 239 LL--RNTIKGNVIIFRRTKYGVDKLEKTLLRNNYKVASIHGDKSQNLRQEALNAFKKGEA 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++ +A+D+AARG+DI +V V NFD+PN +E Y+HRIGRT RAG G A + + ++ + Sbjct: 297 KIFIATDVAARGIDIKNVDAVINFDIPNVSETYVHRIGRTARAGASGMALSFCSADEKNY 356 Query: 357 IDAIEKLI 364 I I++LI Sbjct: 357 IKDIQQLI 364 >gi|153938870|ref|YP_001392080.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str. Langeland] gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum F str. Langeland] gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum F str. 230613] Length = 524 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 235/384 (61%), Gaps = 7/384 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L L+ V+ A+ G+ P+ IQ K+IP+VL+ DV AQTGTGKT +F P+++ Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + + + + L+L PTRELA Q+ D ++ K V + GG E Q K ++ Sbjct: 65 AL-CDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKS 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR+LDH NR L + I+ L++DEAD ML+MGFI I+ I +QT+ Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++K++ N+++ + + I + S T + I + A + K + +++ Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFA--VKNKDKLEAICRIID 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ ++ IIFC K+ V L +++ +G++V +HG++ Q R+ L FK+ T+ +V Sbjct: 242 SEEP-ESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+D+P AE+Y+HRIGRTGRA + G A++LV ++ I I Sbjct: 301 ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++ + K+ +L +L LEK Sbjct: 361 ERITKSKI--TKKELPTLEDILEK 382 >gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1] gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1] Length = 507 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 229/380 (60%), Gaps = 13/380 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L +S + +V G+ + TPIQ TI ++ DV G AQTGTGKTA+F +P++ Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ ++ L++ PTRELA QV++ K G + + + + GG Q + L+ Sbjct: 63 KIDPKNPNIQ---ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKN 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGRI+DH NR L + +++ LV+DEAD ML+MGFI I +I VP RQTL Sbjct: 120 KPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++E F+++P+ +++ T + I+ FV + + +K +L +LL Sbjct: 180 LFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAER--EKFDVLSRLLNV 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIF K+ V L +L +G+ IHG++ Q R+ +L FKE I ++VA Sbjct: 238 HQP-ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVE 356 Query: 362 KLIEKKVDWLNGDLSSLNPP 381 + +K+ ++ L PP Sbjct: 357 ETTKKR-------MTPLRPP 369 >gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus MN8] gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus MN8] Length = 517 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 14 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 74 KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 130 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 190 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 248 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 307 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 366 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E +K +S+L PP K Sbjct: 367 EDANGRK-------MSALRPPHRK 383 >gi|228994170|ref|ZP_04154070.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442] gi|228765622|gb|EEM14276.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442] Length = 481 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 223/364 (61%), Gaps = 10/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++V A+ Y +PT +Q K IP+ L++ D+ +QTG+GKTASF +P+ + Sbjct: 6 FKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ LIL PTRELAAQV ++ G+ + + G PF Q +L++ Sbjct: 66 VEWEENK---PQALILTPTRELAAQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQ 240 FSAT+ ++++ +S ++++P IE+ T + IEH + + +K +LLQ + L+ Sbjct: 183 FSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREE--EKFSLLQDITTLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D+ IIFC ++NV ++ L++ G+ IHG + Q R ++++FK G + +V Sbjct: 241 NPDSC---IIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T V + + + I Sbjct: 298 ATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEI 357 Query: 361 EKLI 364 E+ I Sbjct: 358 EEYI 361 >gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223] gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223] Length = 643 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 66 NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL+NP+ ++V + T +E + +K + +LL Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 360 IERVTRSSME 369 >gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896] Length = 539 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 227/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F + +S ++ A+ G+ + T IQ IP+ + D+ G +QTGTGKT +F +P+L Sbjct: 4 FTEFNISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPILDN 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 IL+ +++ L++ PTRELA QV++ F+K + + GG + Q K L++ Sbjct: 64 ILQNNNHQIQ---ALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLKK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGRILDH R + ++++ +V+DEAD MLDMGFI I+NI RQT+ Sbjct: 121 KVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSEERQTM 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E+ +S+ +L+NP+ I V + T + IE ++ + + K +L ++LQ Sbjct: 181 LFSATMPAEILSLSKKYLKNPEMIRVKNKTMTVDQIEQIYMKV--KNADKSEVLSRILQL 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + K IIFCN KK V L ++ +G++V A+HG++ Q+ R +L+ F+EG I +++A Sbjct: 239 ESS-KKAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQISMLIA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI DV V N+D+P E Y+HRIGRTGRAG GK+++ DI+ + IE Sbjct: 298 TDVAARGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRDIERLRRIE 357 Query: 362 KLIEKKV 368 K + K+ Sbjct: 358 KYAKCKI 364 >gi|170725054|ref|YP_001759080.1| ATP-dependent RNA helicase DbpA [Shewanella woodyi ATCC 51908] gi|169810401|gb|ACA84985.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 469 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 224/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 12 MSFSTLTLKPELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L R R++ +L+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 72 HKLNVKRFRIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R +L + ++ LV+DEADRML+MGF+P + I + +P RQ Sbjct: 129 EHGAHIIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQ 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT ++QK++E + P ++V T + + TI+ F + ++ AL LL Sbjct: 189 TLLFSATFPKQIQKIAEEIMYEPVMVKV-TSTHDSNTIDQHFYELESNKDRQKALRLLLL 247 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++ ++FCN K+ ++ +L GFSV A+HG+++QR R L F + +M Sbjct: 248 QHRP--ESAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIM 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N++ E +IHRIGRTGRAG G A+T ED + Sbjct: 306 VATDVAARGLDIEALDMVVNYEFAYDTEVHIHRIGRTGRAGSKGAAYTFYNYEDDYKVKL 365 Query: 360 IEKLIEKKV 368 +E+ +++++ Sbjct: 366 LEEYLDREI 374 >gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603] gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603] Length = 663 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 26 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 86 NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL+NP+ ++V + T +E + +K + +LL Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 260 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 261 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 320 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 380 IERVTRSSME 389 >gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1] gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1] Length = 525 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 148/384 (38%), Positives = 227/384 (59%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S K V + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 19 NFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALKGDDILGQAQTGTGKTGAFGIPLIE 78 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ K + V + GG+P + Q K L+R Sbjct: 79 KV-VGQEGVQ---SLILAPTRELAMQVAEQLREFSKGQRVQVVTVFGGMPIDRQIKALKR 134 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 G +++ TPGR++DH NR L ++I L++DEAD M++MGFI ++ I +P RQT Sbjct: 135 GPQIVVGTPGRVIDHLNRRTLKTHDIHTLILDEADEMMNMGFIDDMRFIMDKIPADQRQT 194 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q++ + F++ PK I+ + IE + T + +K L Sbjct: 195 MLFSATMPKAIQELVQQFMKTPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 252 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 253 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 311 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 312 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 371 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E + ++ +++L PP K Sbjct: 372 EDVNGRR-------MNALRPPHRK 388 >gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122] gi|123548216|sp|Q2YUH3|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122] Length = 506 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 148/386 (38%), Positives = 225/386 (58%), Gaps = 19/386 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++G ++LIL PTRELA QVA+ ++ + + V + GG+P E Q K L Sbjct: 63 KVVWKQG------VQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKAL 116 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178 ++G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P R Sbjct: 117 KKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQR 176 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATM +Q + + F+++PK I+ + IE + T + +K Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNF 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + I+F K+ V L +L +G+ +HG+I Q R+++L FK I + Sbjct: 235 LDVHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 IE +K +S+L PP K Sbjct: 354 QIEDANGRK-------MSALRPPHRK 372 >gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542] gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542] Length = 593 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 217/371 (58%), Gaps = 9/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D G+ P++V A+ DAG V P PIQ T+P+ + HD+ G A+TGTGKT F +P+L Sbjct: 16 FGDFGVRPEIVQALADAGIVAPFPIQAMTLPVAMAGHDIIGQAKTGTGKTLGFGVPLLHR 75 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E G + P + L++ PTRELA QVA + E ++ + L GG +E Q Sbjct: 76 VVAPGEPGYDELPAPGKPQALVIVPTRELAVQVAKDLEAASTKRSVRIVQLYGGRAYEPQ 135 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K LE+G +V++ TPGR++D +G L + + +V+DEAD MLD+GF+P ++ + + P Sbjct: 136 VKALEQGVEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLARTP 195 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ +++ P I N P +T+++ Y ++ K + Sbjct: 196 AVRHTMLFSATMPGAVVAMARRYMKQPTHIRANDPDDGGQTVKNIKQVVYRAHALDKVEV 255 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++LQS+ + I+F K+ + L +GF+ AIHG++ Q +R + L F+ G Sbjct: 256 LARILQSEGRGLS-IVFARTKRTAAKVADELADRGFASGAIHGDLGQGAREQALRAFRSG 314 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+AARG+D+ +V HV N+ P + Y+HR GRTGRAG G A T V +D+ Sbjct: 315 KIDVLVATDVAARGIDVDEVTHVVNYQCPEDEKTYLHRTGRTGRAGHKGTAVTFVDWDDL 374 Query: 355 KHIDAIEKLIE 365 I K ++ Sbjct: 375 PRWSLINKALD 385 >gi|24374643|ref|NP_718686.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24349273|gb|AAN56130.1|AE015749_7 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 427 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 145/366 (39%), Positives = 210/366 (57%), Gaps = 10/366 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA+LG+ + + + GYV PTP+Q TIP VL DV A TG+GKTA+F LP+L Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69 Query: 62 ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQN 116 L + ++ + R L+L PTRELA QVAD+F Y ++N L + GG+ Q Sbjct: 70 RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L GADVL+ TPGR+LD L + + V+DEADRML +GF ++ + + +P Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +QTLLFSAT +E++ ++ L P +E + S TIE + +K ALL Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQP--LEYHLQSEQESTIEQRVITV--NREQKTALLA 245 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ Q +IF + K +L L K+G S HG+ Q +R ++L FK G I Sbjct: 246 HLIK-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEI 304 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ E+ H Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHH 364 Query: 357 IDAIEK 362 IEK Sbjct: 365 FGVIEK 370 >gi|78063799|ref|YP_373707.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383] gi|77971684|gb|ABB13063.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383] Length = 465 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 150/392 (38%), Positives = 224/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + + GYV TPIQ ++P+ L D+ A+TG+GKTA+F L +L Sbjct: 9 FSALSLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ +IL PTRELA QV + + N+ V L GG P Q + LE Sbjct: 69 LDARRFDVQ---AMILCPTRELADQVTQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG L ++ + LV+DEADRMLDMGF I + + P TRQTL Sbjct: 126 GAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S+ FL+NPK +++ ++ + + T ++ + QLL Sbjct: 186 LFSATYPDGIAKLSQQFLRNPKEVKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNH 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 243 YRPVST-IAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + IE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIE 361 Query: 362 KLIEKKVDW------LNGDLSSLNPPLEKIDI 387 + +++V+W +L PP+E + I Sbjct: 362 QAQKREVEWHPLAELTPTGTDTLLPPMETLQI 393 >gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573] gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573] Length = 663 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 26 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 86 NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL+NP+ ++V + T +E + +K + +LL Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 260 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 261 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 320 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 380 IERVTRSSME 389 >gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus TCH130] gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus TCH130] Length = 517 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 158/423 (37%), Positives = 243/423 (57%), Gaps = 27/423 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 14 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 74 KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 130 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 190 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 248 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 307 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 366 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 E +K +S+L PP K ++ Q AR+++ + +N+ S+KS Sbjct: 367 EDANGRK-------MSALRPPHRK-EVLQ---AREDD--------IKEKVENWMSKKSES 407 Query: 421 PLK 423 LK Sbjct: 408 RLK 410 >gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus TCH70] gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus TCH70] gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus TCH60] gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus MRSA177] Length = 517 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 14 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 74 KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 130 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 190 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 248 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 307 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 366 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E +K +S+L PP K Sbjct: 367 EDANGRK-------MSALRPPHRK 383 >gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421] gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421] Length = 437 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 141/360 (39%), Positives = 214/360 (59%), Gaps = 6/360 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGLS VV A+ + G+ +PTPIQ+K+IP +L D+ AQTGTGKTA+F LP++ Sbjct: 5 FSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPLVDR 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + ARV+ L+L PTRELA QV + Y K+ + V + GG P + Q ++L G Sbjct: 65 SDPQDARVQ---ALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRLRAG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A +++ TPGR+LD RG L ++ + LV+DEAD+MLDMGFI +Q I P RQ + Sbjct: 122 AQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLVF 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++K++ L+ P + + P+ +T + + + L ++L ++ Sbjct: 182 FSATLPASIRKLAARHLRTP--MTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAE 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + +IF K+ L L+ G A+HG+++Q +R +L F+ + ++VA+ Sbjct: 240 DP-ASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI D+ HV N+D+P E+YIHRIGRTGRAGR G A + D + IE+ Sbjct: 299 DVAARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIER 358 >gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451] gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451] Length = 643 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 66 NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL+NP+ ++V + T +E + +K + +LL Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 360 IERVTRSSME 369 >gi|157377241|ref|YP_001475841.1| ATP-dependent RNA helicase RhlB [Shewanella sediminis HAW-EB3] gi|189040083|sp|A8G0U0|RHLB_SHESH RecName: Full=ATP-dependent RNA helicase rhlB gi|157319615|gb|ABV38713.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 435 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 154/411 (37%), Positives = 250/411 (60%), Gaps = 17/411 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L ++ A+ ++G+ TPIQ ++P++LQ+ D+ G AQTGTGKT +F++ Sbjct: 11 FADFSLQTEIKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T + +GR ++ PR +I+ PTRELA Q+A + + K+ L V ++ GG +E Q K Sbjct: 71 LLTTPIPEGR-QLNQPRAIIMAPTRELAIQIAKDADLLAKHTGLKVGIVYGGESYEVQRK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G D+LI T GRI+D+ +G + ++ I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 +R +LFSAT++ ++Q+++ + + P+++E+ T++ I E F Y +K L Sbjct: 190 KSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIF---YPSMDEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L LL+ +D I+F N K + L LE G V + G++ Q+ R++IL F EG Sbjct: 247 LLTLLE-EDWPDKAIVFSNTKHSCEKLWSWLEGDGHRVGLLTGDVPQKKRIRILELFTEG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG+ G + + +E Sbjct: 306 KLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 ++ AIE+ I + N D +L L+ I H RK+N PQ +G Sbjct: 366 LNLPAIEEYINHTIPVTNYDSEAL---LDDIPAPVRVH-RKHNSRPQGRSG 412 >gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Staphylococcus aureus subsp. aureus ST398] Length = 506 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 63 KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E +K +S+L PP K Sbjct: 356 EDANGRK-------MSALRPPHRK 372 >gi|104783494|ref|YP_609992.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48] gi|95112481|emb|CAK17208.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48] Length = 488 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS +V+ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +++ Sbjct: 101 FHDFKLSNEVMHAIHDLGFPYCTPIQAQVLGHTLRGQDAIGRAQTGTGKTAAFLISIISQ 160 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L++ + PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 161 LQQVPPPKERYMGEPRALIIAPTRELVVQIAKDAMALTKYSGLNVMSFVGGMDFDKQLKS 220 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG++ ++ +E+LV+DEADRMLDMGFIP ++ I P Sbjct: 221 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPPK 280 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + NP +E+ + +ET+E A S K LL Sbjct: 281 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 338 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L + G + + G++ Q R++ L NF+EG Sbjct: 339 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGR 397 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 398 ISVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSY 457 Query: 356 HIDAIEKLIEKKV 368 + AIE+L+ +K+ Sbjct: 458 QLPAIEELLGRKI 470 >gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus C160] gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp. aureus C427] gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus A017934/97] gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp. aureus EMRSA16] gi|81650664|sp|Q6GEZ3|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168 gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp. aureus C427] gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus C160] gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus A017934/97] gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp. aureus EMRSA16] gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00] Length = 506 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 63 KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E +K +S+L PP K Sbjct: 356 EDANGRK-------MSALRPPHRK 372 >gi|319893030|ref|YP_004149905.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius HKU10-03] gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius HKU10-03] gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus pseudintermedius ED99] Length = 495 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 146/383 (38%), Positives = 224/383 (58%), Gaps = 15/383 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+S + + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 4 FTELGVSERTAETLEAMGFTEPTPIQKDSIPFALENIDILGQAQTGTGKTGAFGIPLIEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + G+ VR LIL PTRELA QVA+ ++ + + V + GG+P + Q K L+RG Sbjct: 64 V-VGKEGVR---ALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQIKSLKRG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQTL 181 +++ TPGR++DH NR L IE L++DEAD M++MGFI ++ I +P RQT+ Sbjct: 120 PQIVVGTPGRVIDHLNRRTLKPQQIETLILDEADEMMNMGFIDDMRYIMDKLPSENRQTM 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +Q++ + F+++P+ I+ + I+ + T + +K L Sbjct: 180 LFSATMPKAIQELVQKFMKSPRIIKTMNNEISDPQIDEYY--TIVKELEKFDTFTNFLDV 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++VA Sbjct: 238 HQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+HG A T V ++ +I IE Sbjct: 297 TDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKHGIAVTFVNPIEMDYIRQIE 356 Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384 + ++ + +L PP K Sbjct: 357 QTNRRQ-------MRALRPPHRK 372 >gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586] gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586] Length = 643 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 66 NKLNLSQHK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL+NP+ ++V + T +E + +K + +LL Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 360 IERVTRSSME 369 >gi|261416325|ref|YP_003250008.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372781|gb|ACX75526.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 802 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 220/370 (59%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLSP+V+ AV AGY P+PIQ K IP +LQ ++ G AQTGTGKTA+F LP+L+ Sbjct: 126 FDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLSR 185 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 + M L+L PTRELA QV+D ++Y K N+TV + GG Q + L+R Sbjct: 186 INFNGRETSM---LVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKR 242 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 A +++ TPGR++DH RG + + ++ +V+DEAD MLDMGF+ ++ I +P Q Sbjct: 243 KASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRA 302 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D ++K+ + L + + ++T E I C + K L ++L+ Sbjct: 303 LFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENI--CQRYLLVKNEHKIEALARVLEG 360 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ +IF K+N + LE +GF+V ++G++ Q R + ++ K G + ++VA Sbjct: 361 EE-FDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVA 419 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ + V N+D+P E+Y+HRIGRTGRAGR G A + + + + IE Sbjct: 420 TDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIE 479 Query: 362 KLIEKKVDWL 371 K + +D + Sbjct: 480 KATRQPIDVM 489 >gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus N315] gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus MW2] gi|49486874|ref|YP_044095.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650754|ref|YP_186888.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus COL] gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus JH1] gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus Mu3] gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781] gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763] gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719] gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299] gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300] gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224] gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus A5948] gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937] gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30] gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3] gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus ED98] gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117] gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765] gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102] gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132] gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754] gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819] gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1] gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796] gi|81648913|sp|Q6G7M9|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985 gi|81694077|sp|Q5HEB9|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SACOL2072 gi|81704263|sp|Q7A0D2|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004 gi|81705333|sp|Q7A4G0|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885 gi|81781186|sp|Q99SH6|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081 gi|122538977|sp|Q2FWH5|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 gi|123484971|sp|Q2FF45|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037 gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315] gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2] gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus COL] gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp. aureus JH9] gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722532|dbj|BAF78949.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781] gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763] gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719] gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299] gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300] gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224] gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus A5948] gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937] gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3] gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30] gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus ED98] gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20] gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102] gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765] gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117] gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981] gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754] gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819] gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796] gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03] gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01] gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11] gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46] gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus T0131] gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus subsp. aureus 21189] gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus subsp. aureus 21172] gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus subsp. aureus 21193] Length = 506 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 63 KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E +K +S+L PP K Sbjct: 356 EDANGRK-------MSALRPPHRK 372 >gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 402 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 145/339 (42%), Positives = 209/339 (61%), Gaps = 10/339 (2%) Query: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83 PTPIQ++ IPL LQ D+ G AQTGTGKT +F +P++ L + + L++ PTRE Sbjct: 19 PTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLMNEPS---IGSALVIVPTRE 75 Query: 84 LAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142 LA QV K ++ L VALLIGG P Q +L++ ++I TPGRI+DH R L Sbjct: 76 LAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQKKPQIIIGTPGRIIDHIERKTL 135 Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202 + N+ ILV+DE DRM DMGF I+ I +P RQTL+FSAT+ E+ K++E +L P Sbjct: 136 VTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQTLMFSATLPGEIVKLTEKYLNQP 195 Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQLLQSQDTMKNGIIFCNQKKNVVNL 261 +R+ V+ ++T+ I+ V YA S+K L+ QL Q + ++ IIF K+ L Sbjct: 196 ERVSVDCQATTSVKIKQEVV--YASESEKYGKLVTQLCQRKGSI---IIFVKTKRGADQL 250 Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321 L K +S AIHG++ Q R +++ +F+ G Q+MVA+D+A+RGLDIP + HV N+D Sbjct: 251 ADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVASRGLDIPHIQHVINYD 310 Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 VP +Y+HRIGRT RAG G A + V +D + + A+ Sbjct: 311 VPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRRLPAL 349 >gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group] gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group] gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group] gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group] Length = 759 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 138/358 (38%), Positives = 216/358 (60%), Gaps = 8/358 (2%) Query: 12 VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR 71 + V AG+ PTPIQ ++ P+ L+ D+ +A+TG+GKT +++P +L++ + R Sbjct: 242 IYVKVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSR 301 Query: 72 -MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130 P L+L PTRELA Q+ D +K+G++ ++ L GG P Q + LERGAD+++ TP Sbjct: 302 DGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATP 361 Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190 GR+ D ++ ++ + LV+DEADRMLDMGF P I+ I V RQTL+F+AT E Sbjct: 362 GRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKE 421 Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQLLQSQDTMKN 247 ++K++ + L NP ++ + +T + + + + Y +K L Q+L+SQ+ Sbjct: 422 VRKIASDLLSNPVQVNIG---NTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSK 478 Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307 IIFC+ K+ L +L +Q + AIHG+ Q R +LS F+ G ++VA+D+AAR Sbjct: 479 IIIFCSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAAR 537 Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 GLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T +D K+ + K++E Sbjct: 538 GLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 595 >gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus M876] gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus M899] gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus C101] gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus 58-424] gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus M809] gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus M1015] gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus M876] gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus C101] gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus M899] gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus M1015] gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus 58-424] gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus M809] Length = 506 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 151/386 (39%), Positives = 226/386 (58%), Gaps = 19/386 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLI- 61 Query: 62 ILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 EK G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L Sbjct: 62 --EKVLGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKAL 116 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178 ++G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P R Sbjct: 117 KKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQR 176 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATM +Q + + F+++PK I+ + IE + T + +K Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNF 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + I+F K+ V L +L +G+ +HG+I Q R+++L FK I + Sbjct: 235 LDVHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEK 384 IE +K +S+L PP K Sbjct: 354 QIEDANGRK-------MSALRPPHRK 372 >gi|107103380|ref|ZP_01367298.1| hypothetical protein PaerPA_01004450 [Pseudomonas aeruginosa PACS2] Length = 523 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P ++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ ++T Sbjct: 137 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 196 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K+ Sbjct: 197 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 256 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 257 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 316 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + +P +E+ + ++T+E A S K LL Sbjct: 317 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 374 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L K G S + G++ Q R++ L F+EG Sbjct: 375 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 433 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 434 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 493 Query: 356 HIDAIEKLIEKKV 368 + IE+L+ +K+ Sbjct: 494 ALPPIEELLGRKI 506 >gi|312963192|ref|ZP_07777677.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6] gi|311282703|gb|EFQ61299.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6] Length = 444 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 221/370 (59%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L E + R LIL PTRELA QV + +Y ++ LT + GG+ Q K Sbjct: 61 QLLTLEGPKVAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR++D F + L +N ++ LV+DEADRMLD+GF + NI ++P R Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D+++ ++ L +P IEV+ + A T++ V +K L L Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPV--DKKRKAELFVHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + K ++F + V L L+ G + IHG+ Q +R + L FK +Q+ Sbjct: 239 MR-KGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKASEVQI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V NFD+P AE+YIHRIGRTGRAG G+A +LV +++ + Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLS 357 Query: 359 AIEKLIEKKV 368 AIE L + + Sbjct: 358 AIEMLTRQTL 367 >gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] Length = 432 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 218/369 (59%), Gaps = 13/369 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGL P+++ + D Y +PTPIQ K IP +L D+ A TG+GKTA+F LPML Sbjct: 9 NFNELGLIPELIARLSDLEYSQPTPIQAKAIPSILAGSDLIAGANTGSGKTATFALPMLQ 68 Query: 62 IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 L +K ++ LIL PTRELA QVAD+ + Y N+N + + GG+ Sbjct: 69 TLFLAQGAKKAASKGNFVTGLILVPTRELAVQVADSVKSYSANFNGAIKTVAVFGGVSVN 128 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L GAD+++ TPGR+LD + + ++ + LV+DEADRML +GF + + +L Sbjct: 129 TQMQALRGGADIIVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLSLGFTEELAELLAL 188 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P +QT+LFSAT +++ ++++ L NP I+V + + ++ F + K Sbjct: 189 MPAKKQTMLFSATFPEQVTQLTQKLLTNPVEIQVQSKDEST-LVQRVFTVNKGE---KTT 244 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 +L L++ Q + +IF N KK+ +L LEK+G + HG+ Q R +++ FK Sbjct: 245 VLAHLIK-QHKWRQALIFVNAKKDCEHLASKLEKRGVNAQVFHGDKGQSERTRVIEKFKA 303 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I++++A+D+AARGLDI + V NF++P +Y+HRIGR+GRAG G A +L+ +D Sbjct: 304 GEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYDD 363 Query: 354 IKHIDAIEK 362 H IEK Sbjct: 364 FHHFRIIEK 372 >gi|296387620|ref|ZP_06877095.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAb1] Length = 523 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P ++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ ++T Sbjct: 137 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 196 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K+ Sbjct: 197 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 256 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 257 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 316 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + +P +E+ + ++T+E A S K LL Sbjct: 317 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 374 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L K G S + G++ Q R++ L F+EG Sbjct: 375 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 433 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 434 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 493 Query: 356 HIDAIEKLIEKKV 368 + IE+L+ +K+ Sbjct: 494 ALPPIEELLGRKI 506 >gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180 str. F0310] gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180 str. F0310] Length = 598 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 215/370 (58%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G++ +V A+ D G P PIQ T+ L RHD+ G A+TGTGKT F +P+L Sbjct: 72 FADFGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLED 131 Query: 63 L----EKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E+G + P+ LI+ PTREL QVA + K + + + GG+ FE Q Sbjct: 132 VIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLRDAAKYLSTRIVEIYGGVAFEPQ 191 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L RGAD+++ TPGR++D +G L ++ +E +V+DEAD MLD+GF+P ++ + VP Sbjct: 192 IEALTRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGRVP 251 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ F+ +P I P +T+ Y ++ K + Sbjct: 252 ENRHTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEV 311 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + +IFC K+ L L +GF+V A+HG++ Q +R + L F++G Sbjct: 312 VARILQAEGRGRT-VIFCRTKRTAARLGEDLTARGFAVGALHGDLGQGAREQALRAFRKG 370 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ P + YIHRIGRTGRAG G A T V +D Sbjct: 371 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDDT 430 Query: 355 KHIDAIEKLI 364 I K + Sbjct: 431 PRWSLISKAL 440 >gi|161486758|ref|YP_789265.2| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14] Length = 507 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P ++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ ++T Sbjct: 121 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 180 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K+ Sbjct: 181 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 240 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 241 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 300 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + +P +E+ + ++T+E A S K LL Sbjct: 301 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 358 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L K G S + G++ Q R++ L F+EG Sbjct: 359 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 417 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 418 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 477 Query: 356 HIDAIEKLIEKKV 368 + IE+L+ +K+ Sbjct: 478 ALPPIEELLGRKI 490 >gi|329912990|ref|ZP_08275858.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] gi|327545464|gb|EGF30669.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 410 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 213/365 (58%), Gaps = 5/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL ++ + GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFSKLGLIDQLQRNLDTLGYSTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV F +YG + L + GG+ Q K Sbjct: 61 QRLTMEGPQVSSNCVRVLVLVPTRELAEQVHQAFGEYGASLPLRTHVAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ LV+DEADRMLD+GF + + + +P R Sbjct: 121 LRKGLDVLVATPGRLLDLYRQNAVKFEQLQTLVLDEADRMLDLGFSRELDEVFAALPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ +S L NP RIE++ ++ +TI+ A +K L L Sbjct: 181 QTLLFSATFSDEIRALSTTLLDNPVRIEISPRNTPVKTIKQW--AIPVDKKRKPELFLHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++F ++ V L L QG AIHG+ Q +R++ L FK +Q+ Sbjct: 239 LKKH-RWGQVLVFVKTRRGVDELVDILLAQGIRADAIHGDKPQPARLRALEGFKSRDVQI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V NFD+P AE+YIHRIGRTGRAG G A +L+ ++ + Sbjct: 298 LVATDVAARGLDIDDLPQVVNFDLPIVAEDYIHRIGRTGRAGASGMAVSLLCADEAPLLA 357 Query: 359 AIEKL 363 AIE L Sbjct: 358 AIEML 362 >gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM 16795] gi|164603369|gb|EDQ96834.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM 16795] Length = 541 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 142/361 (39%), Positives = 226/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL +S ++ ++ + G+ +P+PIQ ++IP++L DV G AQTGTGKTA+F +P I Sbjct: 6 FEDLPISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSIP---I 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 LEK + + ++L PTRELA QV+ K GK + + GG P + Q K L+ Sbjct: 63 LEKVDPNNKHLQAIVLCPTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPIDRQIKALKS 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH NR L +++++++V+DEAD MLDMGF I+ I + P RQT Sbjct: 123 GVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQTPIERQTT 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+ ++++ + P+ I+V T I+ ++ T + + K +L +L+ Sbjct: 183 FFSATMPKEILELTKLYQHEPEIIKVVRKELTVPNIKQFYIET--RRANKLEVLCRLIDV 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K ++FCN K+ L L+ +G+ A+HG++ Q R ++ F++GTI ++VA Sbjct: 241 YNP-KLSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTIDILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G +F+ V ++++ + IE Sbjct: 300 TDVAARGIDVDDVDMVFNYDLPQDEEYYVHRIGRTGRAGREGVSFSFVYGKEMRKMRDIE 359 Query: 362 K 362 + Sbjct: 360 R 360 >gi|152983852|ref|YP_001346629.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7] gi|150959010|gb|ABR81035.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7] Length = 529 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P ++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ ++T Sbjct: 143 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 202 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K+ Sbjct: 203 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 262 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 263 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 322 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + +P +E+ + ++T+E A S K LL Sbjct: 323 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 380 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L K G S + G++ Q R++ L F+EG Sbjct: 381 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 439 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 440 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 499 Query: 356 HIDAIEKLIEKKV 368 + IE+L+ +K+ Sbjct: 500 ALPPIEELLGRKI 512 >gi|219667645|ref|YP_002458080.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2] gi|219537905|gb|ACL19644.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense DCB-2] Length = 428 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 145/355 (40%), Positives = 218/355 (61%), Gaps = 6/355 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV---R 71 A+ GY + TPIQ + IP +L+ D+ G AQTGTGKTA+F +P+L L G+ + R Sbjct: 18 ALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGLLKGKR 77 Query: 72 MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131 R L+L PTRELA Q+A++F YG N L ++ GG+ Q +KLE+G D+L+ TPG Sbjct: 78 QIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDILVATPG 137 Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191 R+LD N+G + ++++E V+DE D+MLDMG + ++ I + +P RQ +LFSATM E+ Sbjct: 138 RLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSATMPVEI 197 Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251 +K+++ L+ P +I + S + IE + + K ALL L++ + + ++F Sbjct: 198 EKLADTILKGPVKIAMTPEFSPLDIIEQEVY--FVDKANKAALLTYWLKNNE-YDSVLVF 254 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 K + L K+GF+ AIHGN Q +R + L FK+ +++VA+D+AARGLDI Sbjct: 255 SRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVATDIAARGLDI 314 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 ++ HV N+++P E YIHRIGRTGRAG GKA T E+ + I+K I K Sbjct: 315 QELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQKRIGK 369 >gi|311070440|ref|YP_003975363.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942] gi|310870957|gb|ADP34432.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942] Length = 481 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 135/364 (37%), Positives = 219/364 (60%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D LS ++V A+ GY+ PT +Q K +P L++ D+ +QTG+GKTA+F +P+ Sbjct: 4 ISFKDYTLSAEIVRALEGLGYMSPTEVQQKVMPQALEKKDLVVKSQTGSGKTAAFGIPIC 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + + P+ LIL PTRELA QV ++ G+ + A + G PF+ Q +L+ Sbjct: 64 EMADWDENK---PQALILTPTRELAVQVKEDITNIGRFKRMKAAAVFGKSPFDKQKAELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR+LDH +G + ++ LVIDEAD ML+MGFI ++ I +P R T Sbjct: 121 QKTHIVVGTPGRVLDHIEKGTFPLERLKYLVIDEADEMLNMGFIEQVEAIIKHLPRDRMT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ ++++++S +++NP+ IE+ T + IEH + + K +LL+ +L Sbjct: 181 MLFSATLPEDVEQLSRKYMKNPEHIEIKAAGLTTKHIEHSVIEVREDH--KFSLLKDVLV 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + IIFC K+NV L L+ + IHG + Q R +++ FK G + + Sbjct: 239 TENP-DSCIIFCRTKENVDKLSEELDALDYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLA 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T V + + + I Sbjct: 298 ATDVAARGIDIENITHVINYDLPLEKESYVHRTGRTGRAGNQGKAITFVTPYEKRFLAEI 357 Query: 361 EKLI 364 E I Sbjct: 358 EAYI 361 >gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41] gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41] Length = 508 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 228/380 (60%), Gaps = 13/380 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L +S + +V G+ + TPIQ TI ++ DV G AQTGTGKTA+F +P++ Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ ++ L++ PTRELA QV++ K G + + + + GG Q + L+ Sbjct: 63 KIDPKNPNIQ---ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKN 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGRI+DH NR L + +++ LV+DEAD ML+MGFI I I VP RQTL Sbjct: 120 RPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPSERQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K++E F+++P+ +++ T + I+ FV + + +K +L +LL Sbjct: 180 LFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAER--EKFDVLSRLLNV 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIF K+ V L +L +G+ IHG++ Q R+ +L FKE I ++VA Sbjct: 238 HQP-ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG+ G A T V ++ ++ +E Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVE 356 Query: 362 KLIEKKVDWLNGDLSSLNPP 381 + +K+ ++ L PP Sbjct: 357 ETTKKR-------MTPLRPP 369 >gi|313109282|ref|ZP_07795250.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016] gi|310881752|gb|EFQ40346.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016] Length = 523 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P ++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ ++T Sbjct: 137 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 196 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K+ Sbjct: 197 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 256 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 257 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 316 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + +P +E+ + ++T+E A S K LL Sbjct: 317 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 374 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L K G S + G++ Q R++ L F+EG Sbjct: 375 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 433 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 434 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 493 Query: 356 HIDAIEKLIEKKV 368 + IE+L+ +K+ Sbjct: 494 ALPPIEELLGRKI 506 >gi|159903626|ref|YP_001550970.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211] gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211] Length = 604 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 217/371 (58%), Gaps = 9/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F G S ++ + GY PTPIQ P ++ D+ G AQTGTGKTA+F LP Sbjct: 52 LGFEGFGFSDDLINTLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALP-- 109 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ILE+ + R P+ L+L PTRELA QVAD+F Y + + V + GG F AQ L Sbjct: 110 -ILERIKQDTRAPQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQINAL 168 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG +++ TPGR++DH +G + ++E LV+DEAD ML MGFI I+ I +P RQ Sbjct: 169 RRGVQIVVGTPGRVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQLPAKRQ 228 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 + FSATM E++++S+ +L P I + A+ I ++ Q S K L+++L Sbjct: 229 MIFFSATMPSEIRRLSKQYLHEPAEITIKAQKKEAQLIRQRYIVI--QNSFKLEALKRVL 286 Query: 240 QSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ T G IIF K + L SLE +V ++G++ Q R + + ++G I + Sbjct: 287 ET--TADEGVIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDI 344 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A V+ + I+ Sbjct: 345 LVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVSPRERSFIN 404 Query: 359 AIEKLIEKKVD 369 +E+ + + ++ Sbjct: 405 NLERAVGQSIE 415 >gi|323493918|ref|ZP_08099035.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546] gi|323311859|gb|EGA65006.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546] Length = 458 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 146/364 (40%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL +++ + GY + TPIQ + +P+VL DV G +TG+GKTA+F L +L+ Sbjct: 5 FKTLGLKTELLETLDSLGYTEMTPIQQQALPMVLSGKDVIGQGKTGSGKTATFSLGLLSN 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ TL+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 65 LNVKRFRVQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ ++ + LV+DEADRMLDMGF I I P RQTL Sbjct: 122 GAHILVGTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIEAAPAKRQTL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + ++ ++ + NP+ ++V + + TIE F + AL LL Sbjct: 182 LFSATFPNNIESLAAKVMVNPEMVKVES-THEKTTIEQRFYQLNTTEERDDALEALLLTH 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L+ F +I ++VA Sbjct: 241 KP--ESSVVFCNTKKEVQNVADELSHRGFSVVELHGDMEQREREQALTMFANKSISILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++++ + I+ Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFFSEKEAYRVARID 358 Query: 362 KLIE 365 + ++ Sbjct: 359 EYMD 362 >gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 506 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S V ++ G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ + + V + GG+P E Q K L++ Sbjct: 63 KV-VGKQGVQ---SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQT 180 G +++ TPGR++DH NR L + I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK I+ + IE + T + +K L Sbjct: 179 ILFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E +K +S+L PP K Sbjct: 356 EDANGRK-------MSALRPPHRK 372 >gi|150403372|ref|YP_001330666.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus maripaludis C7] gi|150034402|gb|ABR66515.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis C7] Length = 546 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 138/362 (38%), Positives = 222/362 (61%), Gaps = 7/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LGLS +++ A+ G+ PTPIQ + IP++++ + DV G AQTGTGKTA+F +P+L Sbjct: 4 FKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIPILE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ R + LIL PTRELA QVA+ + + L V + GG + Q ++L+R Sbjct: 64 TIDESS---RNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELKR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGRILDH +R + + N+ +V+DEAD ML+MGFI ++ I V ++ L Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRML 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ D + K+++N+++ I+V T + + +++ K LL +++ Sbjct: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSR--DKFELLSRIIDV 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + G+IFC K +V + L ++G++ +HG++ Q R K L FK I ++VA Sbjct: 239 EKEF-YGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI D+ HV N+D+P E+Y+HRIGRTGRAG+ G A T V + + I+ Sbjct: 298 TDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQ 357 Query: 362 KL 363 K+ Sbjct: 358 KI 359 >gi|91784149|ref|YP_559355.1| putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400] gi|91688103|gb|ABE31303.1| Putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400] Length = 537 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 149/388 (38%), Positives = 227/388 (58%), Gaps = 32/388 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LGLS VV A+ AGY PTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 50 FASLGLSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIER 109 Query: 61 -TILEKGRA------------RVRMPR------TLILEPTRELAAQVADNFEKYGKNY-N 100 + L+K +A R R P+ L+L PTRELA QV YGK+ Sbjct: 110 FSQLQKTQAGQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 169 Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 L ++GG+ + Q L + ++L+ TPGR++DH RG++ ++ ++ILV+DEADRMLD Sbjct: 170 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 229 Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216 MGFI I+ I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ ++ A+T Sbjct: 230 MGFIEDIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRMEQRTNIAQT 289 Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276 + + K LL LL+ + I+F K + L L GF A+H Sbjct: 290 VHYV-----DDRDHKDRLLDHLLRDSG-LDQAIVFTATKIDADQLAGRLADAGFESAALH 343 Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336 G++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGRT Sbjct: 344 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 403 Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 GRAGR G A +LV + + IE+ + Sbjct: 404 GRAGRSGIAVSLVHHAEQGALKRIERFV 431 >gi|228921162|ref|ZP_04084492.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838478|gb|EEM83789.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 458 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 225/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPASSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K V L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 614 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 138/361 (38%), Positives = 218/361 (60%), Gaps = 11/361 (3%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPR 74 AV + GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L+ + + + P+ Sbjct: 3 AVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLNQVK---PQ 59 Query: 75 TLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 L+L PTRELA QVA+ F+KY + V + GG P+ Q L+RG V++ TPGR+ Sbjct: 60 ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTPGRV 119 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193 +DH +RG L ++ ++ LV+DEAD ML MGFI ++ + +P RQ LFSATM +++ Sbjct: 120 IDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPAIRR 179 Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ--DTMKNGIIF 251 +++ +L++P + + ++T+ I + + K L ++L+ + D M IIF Sbjct: 180 IAQTYLKDPAEVIIAAKTTTSANIRQRY--WWVSGLHKLDALTRILEVEPFDGM---IIF 234 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 K L L+ +G + AI+G++ Q +R K ++ K+G + ++VA+D+AARGLD+ Sbjct: 235 ARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDV 294 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371 + HV N+D+P E+Y+HRIGRTGRAGR G A V + + +IE+ + ++ + Sbjct: 295 ERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIERATRQPIEEM 354 Query: 372 N 372 Sbjct: 355 Q 355 >gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] Length = 415 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 208/365 (56%), Gaps = 6/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLSP +V A G+ PTP+Q IP VL+ DV G AQTG+GKTA+F LP+L Sbjct: 1 MPFSALGLSPALVQAATAMGFSAPTPVQSAAIPAVLRGADVLGSAQTGSGKTAAFALPLL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117 L+ + R R LIL PTRELAAQV + G+ + VA++ GG+ Q Sbjct: 61 QRLQADAQNAPRHVRALILVPTRELAAQVGEVIRSLGRGLPQPVKVAVVFGGVSINPQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV++ TPGR+LD L + ++E LV+DEADR+LD+GF +Q I L+P Sbjct: 121 GLRGGADVVVATPGRLLDLVEHNALRLGSVEHLVLDEADRLLDLGFAEELQRILQLLPVR 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +Q ++E L P R+ V+ + I A AQ ++ LL+ Sbjct: 181 RQNLLFSATFAPAVQALAEGMLHEPVRVTVDDAPANVPAIAQRAFAVDAQ--RRTQLLRH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+Q + ++F + ++ L K G HG + Q +R ++L FK+ Q Sbjct: 239 LVQEHQWSRV-MVFVATQYAAEHVAEKLYKAGIFATPFHGGLSQGARTQVLQEFKDDRWQ 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++V +DLAARG+DI + V N+D+P A++Y+HRIGRTGRAG G A + V+ H Sbjct: 298 VVVTTDLAARGIDIAQLPAVVNYDLPRSADDYVHRIGRTGRAGESGVAVSFVSAATEAHF 357 Query: 358 DAIEK 362 IEK Sbjct: 358 RLIEK 362 >gi|295704908|ref|YP_003597983.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] gi|294802567|gb|ADF39633.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] Length = 466 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 218/369 (59%), Gaps = 10/369 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+D LS + A+ + G+ + TPIQ + IP+ + D+ G AQTGTGKT +F +P++ Sbjct: 3 NFSDFHLSKDIEKAIHNLGFEEATPIQAEAIPIAMTGKDLIGQAQTGTGKTTAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +E ++ ++L PTRELA QVA+ + G+ + + GG Q K L++ Sbjct: 63 RVELSEEAIQ---GIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQIKALKK 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++ TPGR++DH R + +N+I V+DEAD ML+MGFI IQ I + QTL Sbjct: 120 RPHIISATPGRLMDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQTILGGISSPHQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT--YAQYSKKCALLQQLL 239 LFSATM+ ++Q +++ F+ P+ ++V T + IE +V ++ C L+ L Sbjct: 180 LFSATMSKQVQSLAQKFMNTPELVQVKAKQLTVKNIEQQYVEIPENRKFDVLCNLVD--L 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 QS D I+F KK V L L+K+G++ IHG++ Q R ++ FKE TI++M Sbjct: 238 QSPDL---AIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKEHTIEIM 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG G A T + + H+ Sbjct: 295 VATDVAARGLDITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFIIPRERHHLKV 354 Query: 360 IEKLIEKKV 368 IE + + K+ Sbjct: 355 IEDVTKTKM 363 >gi|125526364|gb|EAY74478.1| hypothetical protein OsI_02369 [Oryza sativa Indica Group] Length = 792 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 225/380 (59%), Gaps = 8/380 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G P+++ + AG+ PTPIQ ++ P+ LQ DV IA+TG+GKT ++LP Sbjct: 152 FETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMH 211 Query: 63 LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ + R P L+L PTRELA Q+ + K+G++ ++ L GG P Q + L+R Sbjct: 212 IKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDR 271 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR+ D ++ + + LV+DEADRMLDMGF P I+ I +P RQTL Sbjct: 272 GVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTL 331 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQL 238 +++AT E+++++E+ L +P ++ + S E + + + + S+K L+Q+ Sbjct: 332 MYTATWPKEVRRIAEDLLVHPVQVTIG---SVDELVANSAITQNVELITPSEKLRRLEQI 388 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+SQD+ +IFC K+ L +L +Q F AIHG+ Q R K+LS+F+ G + Sbjct: 389 LRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPI 447 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N P E+Y+HRIGRTGRAG G A+T +D K+ Sbjct: 448 LVATDVAARGLDIKDIRVVINSPFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAA 507 Query: 359 AIEKLIEKKVDWLNGDLSSL 378 + K++E + DL+ + Sbjct: 508 DLIKILEGANQRVPRDLADM 527 >gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521] gi|74699927|sp|Q4P3U9|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3 gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521] Length = 551 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 223/377 (59%), Gaps = 13/377 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F+DLG+ P++V A + G+ PTPIQ+K IP LQ DV G+AQTG+GKTA+F +P+L Sbjct: 104 VEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPIL 163 Query: 61 TILEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L P+ +L PTRELA Q++ E G + A ++GG+ +Q+ Sbjct: 164 QALWDN------PKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSI 217 Query: 118 KLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L + V++ TPGR+ DH K + ++ LV+DEADR+LDM F P I + +P Sbjct: 218 ALSKRPHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPR 277 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R+T+LFSATMT ++ K+ L+NP R+EV+T +T T++ ++ + ++ K L Sbjct: 278 ERRTMLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYM--FMPFAHKDTYLV 335 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L Q + I+F + L L GF +HG + Q++R+ L+ FK G Sbjct: 336 HLANEQ-AGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGR 394 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G++ TLV + D++ Sbjct: 395 SILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVEL 454 Query: 357 IDAIEKLIEKKVDWLNG 373 + IE +I K+ G Sbjct: 455 LQRIEAVIGLKMTEFPG 471 >gi|110638001|ref|YP_678208.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406] gi|110280682|gb|ABG58868.1| ATP-dependent RNA helicase (cold-shock DEAD-box protein A) [Cytophaga hutchinsonii ATCC 33406] Length = 580 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 229/370 (61%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGLSP+VV A+ GY + TPIQ KTIP+++ D+ G AQTGTGKTA+F +P + Sbjct: 1 MLFKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 E + ++LIL PTRELA QV +K K L V + GG E Q + L Sbjct: 61 ---EHVDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGRI+DH +R L +++ +++DEAD ML+MGF I+ I + +P RQ Sbjct: 118 KAGAHIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSAT+ + +++ F NP+ I++ T T+E + + S+K ++ Q++ Sbjct: 178 TVLFSATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYY--LVKNSQKTEIVTQII 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ +IFCN K+ V + L+ G + ++HG+ QR R +++S F++G ++ Sbjct: 236 -DLNNLQLMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V V N+DVP ENY+HRIGRTGRAG+ GK+FTLV ++ + Sbjct: 295 VATDVAARGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRD 354 Query: 360 IEKLIEKKVD 369 IE+ + ++ Sbjct: 355 IERYTKATIE 364 >gi|319957469|ref|YP_004168732.1| dead/deah box helicase domain protein [Nitratifractor salsuginis DSM 16511] gi|319419873|gb|ADV46983.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis DSM 16511] Length = 477 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 236/393 (60%), Gaps = 16/393 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D P++ A+ +AG+ +P+P+Q + IPL+L+ D+ A TGTGKTA+F LP+L Sbjct: 1 MTFEDFNFKPQLAQAIKEAGFREPSPVQKEAIPLILEGRDLIAQAHTGTGKTAAFGLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + L++ PTRELA QV+D ++GK ++ A + GG + Q + ++ Sbjct: 61 QQLSCDGS----VEALVIVPTRELATQVSDEIFRFGKALSIRTATVYGGSSYTRQIQHVQ 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 A V++ TPGR++D GK+ ++ +++DEAD MLDMGF+ I+ I + +P +RQT Sbjct: 117 -SASVVVATPGRLIDLLQSGKISLSP-RFVILDEADEMLDMGFLDDIKEIFTHLPESRQT 174 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++ +++ L++P + + + T E I F ++ L +LL Sbjct: 175 LLFSATMSKEIRTLAQRILKDPATVSITGGNVTNEKIRQLFYVV--DEPERDDALVRLLD 232 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ K+ IIFC KK V L L QG+ +HG++DQR R + FK G ++++ Sbjct: 233 YKNPDKS-IIFCRMKKEVDRLRDFLAAQGYDAKGLHGDMDQRQREATIRAFKNGQAEILI 291 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HVFN+ +P E+Y+HRIGRTGRAGR G A ++V+ + + + I Sbjct: 292 ATDVAARGLDVNDVSHVFNYHLPFDPESYVHRIGRTGRAGREGTAISIVSPHEFRSLQRI 351 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393 +K + ++ S + P +E++ AQ + A Sbjct: 352 QKSVGSSIE------SRIIPRIEEVR-AQRSDA 377 >gi|119773945|ref|YP_926685.1| DEAD/DEAH box helicase domain-containing protein [Shewanella amazonensis SB2B] gi|119766445|gb|ABL99015.1| DEAD/DEAH box helicase domain protein [Shewanella amazonensis SB2B] Length = 432 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 224/370 (60%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +P+++ A+ + GY TPIQ IP V + DV AQTGTGKTA+F LP+L Sbjct: 1 MKFESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPIL 60 Query: 61 -TILEKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ +AR R LIL PTREL Q+A+N + Y K+ L V + GG + Q +K Sbjct: 61 QKLLDTPKAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+++ TPGR+L+H G L + +E LV+DEADRMLDMGFI IQ + R Sbjct: 121 LRKGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACNKER 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL+FSAT + ++K+++ ++ + + ++ A T+ V + +K LL +L Sbjct: 181 QTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQ--VVYPVEQRRKRELLSEL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ + ++F +++ L L G IH Q +R + L +F EG I++ Sbjct: 239 IGRKN-WQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +V++++AARGLDIPD+ +V NFD+P E+Y+HR+GRTGRAG+ G A + V++E+ + + Sbjct: 298 LVSTEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERTLA 357 Query: 359 AIEKLIEKKV 368 IEKLI +++ Sbjct: 358 DIEKLIGQRL 367 >gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307] gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307] Length = 560 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 220/371 (59%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA GL ++ A+ GY +P+PIQ IP ++ D+ G AQTGTGKTA+F LP+L Sbjct: 17 FAGFGLPDSLLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLLAR 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 + R P+ L+L PTRELA QV++ F++Y L V L GG F Q KL R Sbjct: 77 IN---LEARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRR 133 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH +G L ++ +E LV+DEAD ML MGFI ++ + +P RQ + Sbjct: 134 GVHVVVGTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQLPSERQVV 193 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S+ LQNP + + T + A I + + +K + L ++L++ Sbjct: 194 LFSATMPPEIKRISQQHLQNPAEVIIRTQKADASRIRQRHI--LLPHQQKLSALLRVLEA 251 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 IIF K V + +LE +G + ++G++ Q R + + K+G I ++VA Sbjct: 252 HGP-GGVIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVLVA 310 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D P +E Y+HRIGRTGRAGR G A ++ + + + ++E Sbjct: 311 TDVAARGLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAGRQGDAILFLSYRERRLLHSLE 370 Query: 362 KLIEKKVDWLN 372 + + +D ++ Sbjct: 371 RAVGSSIDAMD 381 >gi|145635138|ref|ZP_01790843.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA] gi|145267559|gb|EDK07558.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA] Length = 613 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 228/369 (61%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH R L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|50086240|ref|YP_047750.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1] gi|49532216|emb|CAG69928.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1] Length = 640 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 147/378 (38%), Positives = 227/378 (60%), Gaps = 15/378 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FAD L + A+ D G+ PTP+Q + IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 8 NFADFSLHESLQQALQDLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 67 Query: 62 IL----------EKGRARVRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGI 110 L E+ RA V P L++ PTRELA QV+ D + +A ++GG+ Sbjct: 68 SLAGQDTFLPFKERMRA-VTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGM 126 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 PF Q ++L +GA V++ TPGR+LD NR ++ ++ ++ L++DEADRMLD+GF ++ I Sbjct: 127 PFAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAI 185 Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230 + L +QTL+FSAT D + +++E +Q+P RI + T ST I T + Sbjct: 186 SELAANRKQTLMFSATFADRIIRLAECMMQDPMRIAIETGHSTNTDITQTLHWTDG-FEH 244 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K LL L S ++M ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 245 KKKLLTHWL-SDESMDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRS 303 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 304 IREGKAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLAT 363 Query: 351 KEDIKHIDAIEKLIEKKV 368 + I A+E +E ++ Sbjct: 364 YRERGKIRALEDYLEARL 381 >gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group] Length = 754 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 138/354 (38%), Positives = 215/354 (60%), Gaps = 8/354 (2%) Query: 16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR-MPR 74 V AG+ PTPIQ ++ P+ L+ D+ +A+TG+GKT +++P +L++ + R P Sbjct: 242 VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPT 301 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 L+L PTRELA Q+ D +K+G++ ++ L GG P Q + LERGAD+++ TPGR+ Sbjct: 302 VLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLN 361 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 D ++ ++ + LV+DEADRMLDMGF P I+ I V RQTL+F+AT E++K+ Sbjct: 362 DILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKI 421 Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQLLQSQDTMKNGIIF 251 + + L NP ++ + +T + + + + Y +K L Q+L+SQ+ IIF Sbjct: 422 ASDLLSNPVQVNIG---NTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIF 478 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 C+ K+ L +L +Q + AIHG+ Q R +LS F+ G ++VA+D+AARGLDI Sbjct: 479 CSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDI 537 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 D+ V N+D P E+Y+HRIGRTGRAG G A+T +D K+ + K++E Sbjct: 538 KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 591 >gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 466 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 143/391 (36%), Positives = 228/391 (58%), Gaps = 27/391 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL ++ A+ ++GY PT +Q + IP ++ D+ +QTG+GKTA+F+LP L Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60 Query: 61 TIL---------------EKGRARVR---------MPRTLILEPTRELAAQVADNFEKYG 96 E AR R P+ L+L PTRELA QV + +KYG Sbjct: 61 HKFASEGDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKYG 120 Query: 97 KNYNLTVAL-LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155 A+ ++GG+P+ Q + L + ++L+ TPGR++DH GK+ + ++ILV+DEA Sbjct: 121 AFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Query: 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215 DRMLDMGFI I+ I + P RQT+LFSAT+ + +++ ++ I++ ++ E Sbjct: 181 DRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHE 240 Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275 I+ C V S K +L LL+ + TM ++F K++ + L GF+ A+ Sbjct: 241 NIKQC-VHFVDDLSHKNRMLDHLLRDE-TMDQAVVFTATKRDADTIADRLNIAGFAAAAL 298 Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335 HG++ Q +R + L + G I+++VA+D+AARG+D+P + HV N+D+P E+Y+HRIGR Sbjct: 299 HGDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGR 358 Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 TGRAGR+G A +LV + ++ IE+ I++ Sbjct: 359 TGRAGRNGIAVSLVNHAESMNVKRIERFIKQ 389 >gi|312602490|ref|YP_004022335.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] gi|312169804|emb|CBW76816.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] Length = 630 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 147/393 (37%), Positives = 224/393 (56%), Gaps = 34/393 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLSP++V A+ AGY PTP+Q + IP L D+ + TG+GKTA+F+LP + Sbjct: 133 FIALGLSPEIVSALTAAGYQAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIER 192 Query: 63 L-----------------------EKGRAR------VRMPRTLILEPTRELAAQVADNFE 93 ++G R V P L+L PTRELA QV Sbjct: 193 FAQMQKAGTLGQRANQPVHQAQRGDRGERRHRREQPVARPALLVLTPTRELAMQVTTAAT 252 Query: 94 KYGKNYN-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152 YGK+ L ++GG+ + Q L + ++L+ TPGR++DH RG++ ++ +++LV+ Sbjct: 253 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVL 312 Query: 153 DEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN-TPS 211 DEADRMLDMGFI I+ I P TRQTLLFSAT+ ++ +++ FL + +RIE+ P Sbjct: 313 DEADRMLDMGFIEDIEAIIDRTPATRQTLLFSATLDGKVGSLAQRFLSDAERIEIRREPE 372 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 S A + + K LL LL + + I+F K + + L + GF+ Sbjct: 373 SRANIAQSVHYVD--DRAHKDRLLTHLL-ADGALDQAIVFTATKNDADVIAARLAEDGFA 429 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 A+HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+H Sbjct: 430 SAALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVH 489 Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RIGRTGRAGR G A +LV ++ + IE+ + Sbjct: 490 RIGRTGRAGRSGIAVSLVHHAEVGTLKRIERFV 522 >gi|229844936|ref|ZP_04465073.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae 6P18H1] gi|229812070|gb|EEP47762.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae 6P18H1] Length = 613 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 228/369 (61%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH R L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + G++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|167625498|ref|YP_001675792.1| ATP-dependent RNA helicase DbpA [Shewanella halifaxensis HAW-EB4] gi|167355520|gb|ABZ78133.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 469 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 221/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L +++ + GY TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 14 FSSLNLKVELLDNLKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNK 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 74 LDVKRFRIQ---TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG+L + N+ LV+DEADRML+MGF ++ I +P RQTL Sbjct: 131 GAHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMERMPIERQTL 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++Q +++ + P ++V + +T+ TIE F + AL LLQ Sbjct: 191 LFSATFPEQIQSIADKIMFKPVMVKVASSHATS-TIEQHFYEVGNNNDRMRALKLLLLQY 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN K+ ++ L+ GFSV A+HG+++QR R + L F ++ +MVA Sbjct: 250 RP--ESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N+ V E +IHRIGRTGRAG G A T + ED I +E Sbjct: 308 TDVAARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYSDEDGYKIALLE 367 Query: 362 KLIEKKV 368 +E+ + Sbjct: 368 DYLERDI 374 >gi|17545341|ref|NP_518743.1| ATP-dependent RNA helicase DbpA [Ralstonia solanacearum GMI1000] gi|17427633|emb|CAD14152.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum GMI1000] Length = 465 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 152/392 (38%), Positives = 221/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P V+ + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QVA + + N+ V L GG P Q LE Sbjct: 70 LDTRRFDVQ---AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 127 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S L+NPK +++ ++ + + T + LL + + Sbjct: 187 LFSATYPDGIAKLSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDERLHAVGLLLKHYRP 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K+ NL L QGF A+HG ++QR R ++L F + ++VA Sbjct: 247 VSTLA----FCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIE 362 Query: 362 KLIEKKVDW---LNGDLSS---LNPPLEKIDI 387 + + ++V+W D SS L PP+E + I Sbjct: 363 QALGREVEWHRLAELDASSDAPLLPPMETLQI 394 >gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101] gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1] gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101] gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1] Length = 643 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 66 NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL+NP+ ++V + T +E + +K + +LL Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HV+N+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 360 IERVTRSSME 369 >gi|167526114|ref|XP_001747391.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774226|gb|EDQ87858.1| predicted protein [Monosiga brevicollis MX1] Length = 504 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 226/392 (57%), Gaps = 9/392 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ + A + KPT IQ ++IPL LQ DV G+A+TG+GKTA+F LP+L Sbjct: 83 FADLGLAEVLCEACATLKFTKPTEIQRRSIPLALQGKDVIGLAETGSGKTAAFALPVLHD 142 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+ F G L A+L+GGI Q L + Sbjct: 143 LLATKGKKEF-FALVLAPTRELAFQIRQTFNALGSPIGLKSAVLVGGIDMTTQAIALAKK 201 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 VLI TPGR++DH K + + L++DEADRML+M + + I +++P R+T Sbjct: 202 PHVLIATPGRLVDHLENTKGFHLKALRYLIMDEADRMLNMDYEKELDKILAVIPRERRTF 261 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239 LFSATMT ++ K+ L++P ++EVN+ T +T+ + FV Q K C L+ L Sbjct: 262 LFSATMTSKVGKLQRASLRDPVKVEVNSKYKTVDTLIQRYMFVP---QKFKDCYLI--YL 316 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q + IIFC+ NV+ L GF +HG + Q R+ L+ F + ++ Sbjct: 317 MNQLRGNSFIIFCSTCNNVMKATLVLRDLGFDAVCLHGQMSQPKRLGALAKFTSQSHTIL 376 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G A T+ + D++ Sbjct: 377 VATDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGHAITIATQYDVELFQR 436 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391 IE LI KK++ + S + LE++ AQ N Sbjct: 437 IEALIGKKMEEYPTESSQVLQLLERVSDAQRN 468 >gi|255524805|ref|ZP_05391755.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] gi|296188658|ref|ZP_06857046.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7] gi|255511472|gb|EET87762.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] gi|296046922|gb|EFG86368.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7] Length = 480 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 143/396 (36%), Positives = 231/396 (58%), Gaps = 20/396 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D L ++ ++ + GY KP+ +Q + IPL+LQ DV +QTG+GKTA+F +P Sbjct: 4 IKFEDFRLGQDILKSIKNIGYKKPSKVQQQVIPLILQGKDVIVKSQTGSGKTAAFAIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I E + LIL PTRELA Q+ ++ G+ + + + G P + Q K+L+ Sbjct: 62 -ICEHMEIEENDAQALILTPTRELAVQIKEDISNIGRFKRIRCSAIFGKQPMDTQKKELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR LDH RG + + NI+ L++DEAD ML+MGFI + I +P +RQ Sbjct: 121 QRVHIIVGTPGRTLDHIKRGNMNLQNIKFLILDEADEMLNMGFIEEVSEIIENIPVSRQN 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLL 239 +LFSATM + ++ +S+ +++NP ++E+ T + IE C++ + + K +LL+ LL Sbjct: 181 MLFSATMPEAIENLSKKYMKNPAKVEITPEKLTVDNIEQKCYI---IEENNKFSLLRNLL 237 Query: 240 --QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ DT I+FC K NV + ++ + +S IHG + Q R+ +++FK G + Sbjct: 238 YIENPDT---AIVFCRTKNNVDYVTSRMKAEKYSCDKIHGGMLQNERLDTMNSFKMGEFR 294 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++A+D+AARG+DI +V HV N+D+P E+YIHRIGRTGRAG G A T + + + Sbjct: 295 FLIATDVAARGIDIDNVTHVINYDLPMEKESYIHRIGRTGRAGNKGTAITFSTPNEDRFL 354 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393 IE D++ ++ P EK D Q+ A Sbjct: 355 SEIE-------DYIQMEIPKCELPTEK-DANQNKEA 382 >gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group] Length = 2897 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 139/372 (37%), Positives = 224/372 (60%), Gaps = 14/372 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G P+++ + AG++ PTPIQ +T P+ LQ D+ IA+TG+GKT +++P Sbjct: 603 MTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAF 662 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + + P L+L PTRELA+Q+ D K+G++ ++ L GG Q ++L Sbjct: 663 IHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLREL 722 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD+++ TPGR+ D K+ ++ + LV+DEADRMLDMGF P I+ I +P RQ Sbjct: 723 ERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQ 782 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK---KCALLQ 236 TL+++AT E+ K++ + L++P ++ + S E + + + Y + K L+ Sbjct: 783 TLMYTATWPKEVTKIAGDLLKDPVQVNIG---SIDELVANKSITQYVEVVPPLDKQRRLE 839 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK---QGFSVCAIHGNIDQRSRMKILSNFKE 293 Q+L++Q+ IIFC+ KK +C L + + F +IHG+ Q R +L+ F+ Sbjct: 840 QILRAQERGSKVIIFCSTKK----MCDQLARDIGRSFGAASIHGDKSQAERDNVLNQFRT 895 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G ++T +++D Sbjct: 896 GRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQD 955 Query: 354 IKHIDAIEKLIE 365 K+ + K++E Sbjct: 956 WKYAGDLVKVLE 967 >gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286] gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33] gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9] gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236] gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9] gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33] gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286] gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236] Length = 653 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 16 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 75 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 76 NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 132 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 133 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 192 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL+NP+ ++V + T +E + +K + +LL Sbjct: 193 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 250 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 251 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 309 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HV+N+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 310 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 369 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 370 IERVTRSSME 379 >gi|229065102|ref|ZP_04200395.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603] gi|228716131|gb|EEL67850.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603] Length = 481 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 223/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FADYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++K+S ++ +P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREE--EKLSLLKDITTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVFQQLKRINYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG +GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109] gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109] Length = 607 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 220/371 (59%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G S ++ + D GY +P+PIQ P ++ D+ G AQTGTGKTA+F LP+L Sbjct: 59 FAGFGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE G+ + P+ L+L PTRELA QVA++F+ Y + +L V + GG F +Q L R Sbjct: 119 LESGQ---KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRR 175 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR++DH +G L + + LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVV 235 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S+ +L++P + + T + I + + K LQ++L + Sbjct: 236 LFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPH--KLEALQRVLDA 293 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIF K + + +LE G V ++G++ Q R + + + G++ ++VA Sbjct: 294 CGG-EGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 352 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A V + + I +E Sbjct: 353 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLE 412 Query: 362 KLIEKKVDWLN 372 + + ++ + Sbjct: 413 RATGQPIEAME 423 >gi|319896568|ref|YP_004134761.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031] gi|317432070|emb|CBY80420.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031] Length = 613 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 228/369 (61%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + ++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|290957574|ref|YP_003488756.1| helicase [Streptomyces scabiei 87.22] gi|260647100|emb|CBG70199.1| putative helicase [Streptomyces scabiei 87.22] Length = 865 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 144/374 (38%), Positives = 220/374 (58%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F DLG+ P+ A+ G + P PIQ T+P+ L D+ G A+TGTGKT F LP+L Sbjct: 32 FRDLGIFPETAEALEAVGIITPFPIQEMTLPVALTGTDIIGQAKTGTGKTLGFGLPLLER 91 Query: 61 ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +E GRA+ V P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 92 VVVPADVEAGRAKPEDLVDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 151 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV+I TPGR+LD + KL + N++ LV+DEAD MLD+GF+P ++ I + Sbjct: 152 EPQVEALKKGVDVVIGTPGRLLDLAGQKKLNLKNVKCLVLDEADEMLDLGFLPDVEKIIN 211 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231 ++P RQT+LFSATM + ++ ++ P I +P T+ + Y A K Sbjct: 212 MLPARRQTMLFSATMPGAVIGLARRYMSQPTHIRATSPDDEGATVRNTSQHIYRAHNMDK 271 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L+ ++LQ+ D ++FC K+ +L L+++GF+ A+HG++ Q +R + L F Sbjct: 272 PELVARILQA-DGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 330 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TLV Sbjct: 331 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGIAITLVDW 390 Query: 352 EDIKHIDAIEKLIE 365 +DI I K ++ Sbjct: 391 DDIPRWQLINKALD 404 >gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar eltor str. N16961] gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80] gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52] gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457] gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33] gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2] gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10] gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757] gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80] gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52] gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457] gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33] gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2] gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10] gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757] Length = 663 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 26 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 86 NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL+NP+ ++V + T +E + +K + +LL Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 260 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 261 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HV+N+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 380 IERVTRSSME 389 >gi|228942602|ref|ZP_04105134.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228982168|ref|ZP_04142457.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407] gi|228777520|gb|EEM25798.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407] gi|228817028|gb|EEM63121.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943251|gb|AEA19147.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar chinensis CT-43] Length = 481 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 221/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPIKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L + + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|89896500|ref|YP_519987.1| hypothetical protein DSY3754 [Desulfitobacterium hafniense Y51] gi|89335948|dbj|BAE85543.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 478 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 145/355 (40%), Positives = 218/355 (61%), Gaps = 6/355 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV---R 71 A+ GY + TPIQ + IP +L+ D+ G AQTGTGKTA+F +P+L L G+ + R Sbjct: 68 ALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGLLKGKR 127 Query: 72 MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131 R L+L PTRELA Q+A++F YG N L ++ GG+ Q +KLE+G D+L+ TPG Sbjct: 128 QIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDILVATPG 187 Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191 R+LD N+G + ++++E V+DE D+MLDMG + ++ I + +P RQ +LFSATM E+ Sbjct: 188 RLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSATMPVEI 247 Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251 +K+++ L+ P +I + S + IE + + K ALL L++ + + ++F Sbjct: 248 EKLADTILKGPVKIAMTPEFSPLDIIEQEVY--FVDKANKAALLTYWLKNNE-YDSVLVF 304 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 K + L K+GF+ AIHGN Q +R + L FK+ +++VA+D+AARGLDI Sbjct: 305 SRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVATDIAARGLDI 364 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 ++ HV N+++P E YIHRIGRTGRAG GKA T E+ + I+K I K Sbjct: 365 QELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQKRIGK 419 >gi|120600080|ref|YP_964654.1| ATP-dependent RNA helicase SrmB [Shewanella sp. W3-18-1] gi|146291991|ref|YP_001182415.1| ATP-dependent RNA helicase SrmB [Shewanella putrefaciens CN-32] gi|120560173|gb|ABM26100.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145563681|gb|ABP74616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 419 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 219/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G+ PT IQ +TIP L++ D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDFHLDPSLLESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LIL PTRELA+Q+ + L +A++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRFSGQARILILTPTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+L+ TPGR++++ ++GK ++IL+IDEADRMLDMGF +Q I +Q Sbjct: 121 AGNVDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ +Q+ + L++P I+V+ P S I H ++ K ALL L Sbjct: 181 NMLFSATLEGGGVQRFAREVLKDPIEIDVDAPRSEKAKI-HQWIHLADDKEHKFALLCHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D +K I+F + V +L L K G + G+++Q+ R + LS F +G + + Sbjct: 240 LRQED-VKRTIVFVKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV NFD+P A+ YIHRIGRTGRAG G A +L D++ + Sbjct: 299 LLATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 359 KIERYIEQ 366 >gi|229112867|ref|ZP_04242398.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15] gi|296505875|ref|YP_003667575.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] gi|228670546|gb|EEL25859.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15] gi|296326927|gb|ADH09855.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] Length = 481 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|229148341|ref|ZP_04276624.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24] gi|228635135|gb|EEK91682.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24] Length = 481 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|319425286|gb|ADV53360.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 419 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 219/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G+ PT IQ +TIP L++ D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDFHLDPSLLESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPTL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LIL PTRELA+Q+ + L +A++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRFSGQARILILTPTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+L+ TPGR++++ ++GK ++IL+IDEADRMLDMGF +Q I +Q Sbjct: 121 AGNVDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ +Q+ + L++P I+V+ P S I H ++ K ALL L Sbjct: 181 NMLFSATLEGGGVQRFAREVLKDPIEIDVDAPRSEKAKI-HQWIHLADDKEHKFALLCHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D +K I+F + V +L L K G + G+++Q+ R + LS F +G + + Sbjct: 240 LRQED-VKRTIVFVKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV NFD+P A+ YIHRIGRTGRAG G A +L D++ + Sbjct: 299 LLATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 359 KIERYIEQ 366 >gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123643052|sp|Q49Z29|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802 gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 506 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 145/384 (37%), Positives = 228/384 (59%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S K+ + G+ + TPIQ ++IPL L+ DV G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + A ++LIL PTRELA QVA++ + + K N+ V + GG+P + Q K L++ Sbjct: 63 KV----ADQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L N+I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++P ++ + IE + T + +K L Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYY--TIVKELEKFDTFTSFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK + ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E+ +++ +++L PP K Sbjct: 356 EQANKRQ-------MTALRPPHRK 372 >gi|218233461|ref|YP_002370229.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus B4264] gi|229153612|ref|ZP_04281789.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550] gi|218161418|gb|ACK61410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus B4264] gi|228629841|gb|EEK86493.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550] Length = 481 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|213966785|ref|ZP_03394936.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato T1] gi|301383294|ref|ZP_07231712.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato Max13] gi|302062467|ref|ZP_07254008.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato K40] gi|302133449|ref|ZP_07259439.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928635|gb|EEB62179.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato T1] Length = 442 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG+ G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|212224191|ref|YP_002307427.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1] gi|212009148|gb|ACJ16530.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1] Length = 403 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 152/419 (36%), Positives = 237/419 (56%), Gaps = 27/419 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 M F +LGLS + AV G+ +PT IQ + IP +L D+ G +QTGTGKTA+F LP+ Sbjct: 1 MSFENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPI 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + +++ V+ +IL PTRELA QVAD + + V + GG P Q + L Sbjct: 61 IEAIDEKEKSVQ---AIILAPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRAL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG V++ TPGR+LDH RG L ++ ++ ++DEADRMLDMGFI I+ I P ++ Sbjct: 118 ERGTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKR 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM E+ +++ ++ + + I+V++ +E ++ ++K + L+++L Sbjct: 178 VLMFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVP--ARKFSTLKKIL 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S D GI+FC K+ L L KQG+S A++G++ Q +R + FK +++ Sbjct: 236 -SDDFY--GIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRIL 292 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ D+ H+ N+ +P AE+Y+HRIGRTGR G+ GKA T + + K + Sbjct: 293 VATDVAARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRY 352 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK---------STGFDRR 409 I + VD +LS P +++ K PQ+ S G+ RR Sbjct: 353 IASV--AGVDIQKSELSEELP-------REYHERYKREERPQRYRKNGRRDYSRGYSRR 402 >gi|330873518|gb|EGH07667.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967687|gb|EGH67947.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 442 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG+ G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99] gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99] Length = 611 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 233/373 (62%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS ++ ++ + GY KPTPIQ +I ++ D+ G AQTGTGKT +F LP+L Sbjct: 6 LTFRELGLSEPLLRSLDELGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ + P+ L+L PTRELA QVA+ F Y K L V + GG Q L Sbjct: 66 SNIDPA---INAPQILVLAPTRELAVQVAEAFATYAKFVKGLHVLPIYGGQSMHQQLNAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG V++ TPGR++DH RG L +++++ +V+DEAD ML MGFI I+ I P RQ Sbjct: 123 RRGPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++++V+ +L +P +++ ++T ET E FV +Q++K AL++ +L Sbjct: 183 LALFSATMPEQIKRVANKYLTDPIHVKIAATTATVETTEQRFVQV-SQHNKLEALVR-VL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + T + IIF + + V L LE +G++ +HG+++Q++R + + K G++ ++ Sbjct: 241 EVEKT-EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSLDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + HV N+D+P E YIHRIGRTGRAGR G A V +++ + Sbjct: 300 IATDVAARGLDVERIRHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRMLRT 359 Query: 360 IEKLIEKKVDWLN 372 IE+ + ++ ++ Sbjct: 360 IERATKSRISPMD 372 >gi|229000239|ref|ZP_04159808.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17] gi|228759571|gb|EEM08548.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17] Length = 481 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 222/364 (60%), Gaps = 10/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++V A+ Y +PT +Q K IP+ L++ D+ +QTG+GKTASF +P+ + Sbjct: 6 FKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ LIL PTRELA QV ++ G+ + + G PF Q +L++ Sbjct: 66 IEWEENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQ 240 FSAT+ ++++ +S ++++P IE+ T + IEH + + +K +LLQ + L+ Sbjct: 183 FSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREE--EKFSLLQDITTLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D+ IIFC ++NV ++ L++ G+ IHG + Q R ++++FK G + +V Sbjct: 241 NPDSC---IIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T V + + + I Sbjct: 298 ATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEI 357 Query: 361 EKLI 364 E+ I Sbjct: 358 EEYI 361 >gi|78486222|ref|YP_392147.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2] gi|78364508|gb|ABB42473.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2] Length = 401 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 149/362 (41%), Positives = 220/362 (60%), Gaps = 3/362 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L PK++ A+ + Y KPTPIQ + IP +L DV A TGTGKTA+FVLP L Sbjct: 1 MTFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTGKTAAFVLPAL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R PR LIL PTRELA Q+ ++ G + ++ GG + Q + L+ Sbjct: 61 QFLLDDPRPSRKPRVLILAPTRELAFQIHKVVKQLGAHCPFESNVVTGGFASDKQLEILQ 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D+L+ TPGR+L+ ++ + +++IE+L+IDEADRMLDMG P + + +P Q Sbjct: 121 SKIDILVATPGRLLNIMSKEFIDLSDIELLIIDEADRMLDMGQGPDVLALIEAIPGDFQA 180 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 FSAT+ + K +E L +P+ I+VN P+ +E I+ +V + K ALL+ +L Sbjct: 181 ACFSATLAGSGITKFAEEVLDSPEIIQVNAPNEKSEQIQQ-WVYLANDKAHKKALLKAIL 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + T ++ I+FCN+K + L L+ + S +HG+ Q R++ FK+G I+++ Sbjct: 240 EDE-TCQSAIVFCNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQGKIKVL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI +V HV N+DVP R + YIHRIGRTGRA + G A LV + DI ++ Sbjct: 299 VATDVAARGLDILNVTHVINYDVPYRGDIYIHRIGRTGRAQQVGIAINLVERHDITNLQR 358 Query: 360 IE 361 IE Sbjct: 359 IE 360 >gi|316965399|gb|EFV50121.1| putative DEAD/DEAH box helicase [Trichinella spiralis] Length = 1007 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 141/378 (37%), Positives = 221/378 (58%), Gaps = 30/378 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 + + G +++ ++ GY +PTPIQ + IP+ LQ DV G+A+TG+GKTA+F++P+L Sbjct: 584 WLEAGFPTEILDVIMKIGYTEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLCF 643 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++++ + P +I+ PTRELA Q+ + K+G + +IGG+ E Q KL Sbjct: 644 VMIKREEDVDQGPYAVIMAPTRELAQQIEEEANKFGGPLGVRTVSVIGGLSREEQGFKLR 703 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--- 177 G +++I TPGR++D L++N +++DEAD+MLDMGF PY+QNI S +P T Sbjct: 704 MGCEIVIATPGRLVDVLENRYLVLNQCTYVILDEADKMLDMGFEPYVQNILSYMPVTNLK 763 Query: 178 ----------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215 RQT++F+ATM+ +++++ N+L+ P + + E Sbjct: 764 PDTEEAEDEKALLNNFYSKKKFRQTVMFTATMSSAVERLARNYLRRPAVVYIGAIGKPTE 823 Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275 +E V ++ K+ L+Q L + + IIF NQKK L LEK GF+ CA+ Sbjct: 824 RVEQ-IVYMVSESEKRKKLVQILEKGIEPPI--IIFVNQKKGADLLARGLEKLGFNPCAL 880 Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335 HG Q +R L++ K+G+ ++VA+D+A RG+DI DV V N+D+ E+Y HRIGR Sbjct: 881 HGGKGQDARDYALASLKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRIGR 940 Query: 336 TGRAGRHGKAFTLVAKED 353 TGRAG+ GKA T + KED Sbjct: 941 TGRAGKSGKAITFLTKED 958 >gi|30023480|ref|NP_835111.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|229130700|ref|ZP_04259653.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4] gi|29899041|gb|AAP12312.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|228652717|gb|EEL08602.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4] Length = 481 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|330952956|gb|EGH53216.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae Cit 7] Length = 442 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ LT GG+ Q K Sbjct: 61 QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense YUAN-3] gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense YUAN-3] Length = 530 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 226/364 (62%), Gaps = 11/364 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLS V+ A+ G+ +P+ IQ + IP++L+ +DV G AQTGTGKT ++ P++++ Sbjct: 6 FAKLGLSEDVLKAIDLMGFEEPSQIQTQAIPVILEGNDVIGQAQTGTGKTLAYSAPVISL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E G +V+ LIL PTRELA QV D + + + T + GG P + Q + L++G Sbjct: 66 MEHGPHQVQ---ALILVPTRELAIQVNDELVRINRFTHFTSIPVYGGQPIDRQIRALQKG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGRILDH RG + +++ V+DE+D ML+MGFI IQ + +P RQ+LL Sbjct: 123 VDIVVATPGRILDHIRRGTVDFSHVRFFVLDESDEMLNMGFIDDIQAVLDTLPAERQSLL 182 Query: 183 FSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM +++K+++ ++ + K I + + TA E + V ++ C +L Sbjct: 183 FSATMPMQIRKLAQQHMKPDVKNIVIAKSTLTATLTEQFYFEVKHRDRFETLCRIL---- 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D ++ IIFC K+ V L +++ +G+ V +HG++ Q R L F++G + + Sbjct: 239 -DVDEPESAIIFCRTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI ++ HV N+++P AE+Y+HRIGRTGRA R G A++LV + + Sbjct: 298 VATDVAARGIDIENISHVINYELPEDAESYVHRIGRTGRANRTGIAYSLVTPREYIILKQ 357 Query: 360 IEKL 363 IE++ Sbjct: 358 IERV 361 >gi|289705155|ref|ZP_06501559.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus SK58] gi|289558183|gb|EFD51470.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus SK58] Length = 470 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 142/375 (37%), Positives = 214/375 (57%), Gaps = 16/375 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FAD G+ PK+V A+ G V P PIQ T+P+ L HD+ G A+TGTGKT F +P L Sbjct: 39 FADFGVHPKIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQR 98 Query: 61 ----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 + KG A P+ LI+ PTRELA QVA + L +A + GG Sbjct: 99 AIGPGEPGWDALEAKGTAGA--PQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGR 156 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 +E Q ++L+RG ++++ TPGR++D + L ++ + +V+DEAD MLD+GF+P ++ + Sbjct: 157 AYEPQIEELQRGIEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETL 216 Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYS 229 + VP RQT+LFSATM + ++ ++ P I P T + Y A + Sbjct: 217 LAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHM 276 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K L+ + LQ++ + IIF K+ + L +GF+ A+HG++ Q +R + L Sbjct: 277 DKDELVARALQAEGRGRT-IIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALR 335 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 F+ G + ++VA+D+AARG+D+ DV HVFNF P + Y+HR+GRTGRAG G A TLV Sbjct: 336 AFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395 Query: 350 AKEDIKHIDAIEKLI 364 ED+ I+K + Sbjct: 396 DWEDMPRWSLIDKAL 410 >gi|209518020|ref|ZP_03266851.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] gi|209501524|gb|EEA01549.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] Length = 532 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 147/388 (37%), Positives = 222/388 (57%), Gaps = 32/388 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLS VV A+ AGY PTP+Q + +P + D+ + TG+GKTA+F+LP + Sbjct: 38 FASLGLSADVVSALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97 Query: 63 L-----------------EKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNY-N 100 + GR R V P L+L PTRELA QV YGK+ Sbjct: 98 FAQLQKAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKR 157 Query: 101 LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 L ++GG+ + Q L + ++L+ TPGR++DH RG++ ++ ++ILV+DEADRMLD Sbjct: 158 LRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLD 217 Query: 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAET 216 MGFI I I + P TRQT+LFSAT+ ++ ++ L++P+RIE+ ++ A+T Sbjct: 218 MGFIDDIDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQT 277 Query: 217 IEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276 + + K LL LL+ + I+F K + L L GF A+H Sbjct: 278 VHYV-----DDRDHKDRLLDHLLRDAG-LDQAIVFTATKMDADQLAGRLADAGFESAALH 331 Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336 G++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGRT Sbjct: 332 GDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRT 391 Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 GRAGR G A +LV + + IE+ + Sbjct: 392 GRAGRSGVAVSLVHHAEQGALKRIERFV 419 >gi|218889855|ref|YP_002438719.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58] gi|254236766|ref|ZP_04930089.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719] gi|254242553|ref|ZP_04935875.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192] gi|308154507|ref|NP_252550.3| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1] gi|32363412|sp|Q9HXE5|RHLB_PSEAE RecName: Full=ATP-dependent RNA helicase rhlB gi|122261039|sp|Q02S21|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase rhlB gi|226739542|sp|B7UUT0|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase rhlB gi|9950039|gb|AAG07248.1|AE004803_4 ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1] gi|115587113|gb|ABJ13128.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14] gi|126168697|gb|EAZ54208.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719] gi|126195931|gb|EAZ59994.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192] gi|218770078|emb|CAW25840.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58] Length = 397 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 226/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P ++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ ++T Sbjct: 11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 70 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K+ Sbjct: 71 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 130 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 131 LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 190 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + +P +E+ + ++T+E A S K LL Sbjct: 191 GERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKLL 248 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L K G S + G++ Q R++ L F+EG Sbjct: 249 YNLV-AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGK 307 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 308 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAF 367 Query: 356 HIDAIEKLIEKKV 368 + IE+L+ +K+ Sbjct: 368 ALPPIEELLGRKI 380 >gi|330969509|gb|EGH69575.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 442 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ LT GG+ Q K Sbjct: 61 QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|209693767|ref|YP_002261695.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238] gi|226739529|sp|B6EPA4|RHLB_ALISL RecName: Full=ATP-dependent RNA helicase rhlB gi|208007718|emb|CAQ77831.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238] Length = 434 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 226/384 (58%), Gaps = 13/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P+V+ + G++ TPIQ K +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T +GR ++ PR +I+ PTRELA Q+ ++ E + L AL GG +E Q K Sbjct: 71 LLTTPAPEGR-KITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGGERYEKQQK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 +E G D+LI T GRI+D + +G++ I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VIEAGVDILIGTTGRIIDFYKQGQIDFKAIQVVVLDEADRMFDLGFIKDIRFVFRRMPAP 189 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 R +LFSAT++ +Q+++ +Q P+ + V T I E F Y K AL Sbjct: 190 AERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPDQKTGHLITEELF---YPSNDHKMAL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ L++ ++ IIF N K + L V + G++ Q+ R +IL F +G Sbjct: 247 LQTLIE-EEWPDRAIIFANTKHKCELVWGHLAADKHRVGLLTGDVPQKKRERILEEFTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL IP V HVFNFD+PN AE+Y+HRIGRTGRAG G + + +E Sbjct: 306 EVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGESGNSISFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE+ IE + + D S+L Sbjct: 366 INLPAIEEYIEHSIPQSDYDTSAL 389 >gi|218900583|ref|YP_002448994.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9842] gi|218541686|gb|ACK94080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9842] Length = 481 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 224/364 (61%), Gaps = 10/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LLQ 240 FSAT+ ++++K+S ++ +P IE+ T + IEH A +K +LL+ +++ Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFE--AIEDEKFSLLKDVTMIE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D+ IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +V Sbjct: 241 NPDSC---IIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ I Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357 Query: 361 EKLI 364 E I Sbjct: 358 EDYI 361 >gi|326491449|dbj|BAJ94202.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 674 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 138/351 (39%), Positives = 213/351 (60%), Gaps = 8/351 (2%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLI 77 AG+ PTPIQ ++ P+ L DV IA+TG+GKT ++LP +++ + R P L+ Sbjct: 30 AGFPSPTPIQAQSWPIALLNQDVVAIAKTGSGKTLGYLLPGFMHIKRMQNSTRSGPTVLV 89 Query: 78 LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137 L PTRELA Q+ + K+G++ ++ L GG P Q + LERG DV++ TPGR+ D Sbjct: 90 LAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLERGVDVVVATPGRLNDIL 149 Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 K+ + + LV+DEADRMLDMGF P I+ I +P RQTL+++AT E++++++ Sbjct: 150 EMRKISLKQVSYLVLDEADRMLDMGFEPQIRKIVRDIPSGRQTLMYTATWPKEVRRIADE 209 Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQY---SKKCALLQQLLQSQDTMKNGIIFCNQ 254 L +P ++ + S E + + + + + S+K L+Q+L+S D+ +IFC Sbjct: 210 LLVHPVQVTIG---SVDELVANKAITQHVEVITPSEKLRRLEQILRSHDSGSKILIFCTT 266 Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 K+ L +L +Q F AIHG+ Q R K+LS F+ G ++VA+D+AARGLDI D+ Sbjct: 267 KRMCDQLSRTLNRQ-FGAAAIHGDKSQNEREKVLSQFRSGRAPILVATDVAARGLDIKDI 325 Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 V N+D P E+Y+HRIGRTGRAG G A+T + +D K+ + K++E Sbjct: 326 RVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFLCDQDSKYASDLIKILE 376 >gi|242280284|ref|YP_002992413.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM 2638] gi|242123178|gb|ACS80874.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM 2638] Length = 400 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 151/419 (36%), Positives = 238/419 (56%), Gaps = 21/419 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +++ + AGY PTP+Q+K IP VLQ DV G+AQTGTGKTA+FVLP+L Sbjct: 1 MSFDQFKFDMRLISGIRSAGYEVPTPVQLKAIPAVLQGRDVMGLAQTGTGKTAAFVLPVL 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L A R P + L+L PTRELA Q + F + G+ + A + GG Q K++ Sbjct: 61 QRLLDEEAEKRGPVKVLVLSPTRELALQTHETFIELGRQTGIRSAAVYGGAGIGKQAKEV 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++ V+ TPGR+LD R ++ ++ ++ L++DEADRMLDMGF+ ++ + + +P RQ Sbjct: 121 KK-VTVINATPGRLLDLLEREEIDLSQVDTLILDEADRMLDMGFMDEVEKVLAKLPAERQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQL 238 L+FSATM D + +S+N L +P+ + V T S+ ++ C V + + S ++ Sbjct: 180 NLMFSATMPDAINSLSKNILHDPEVVRVAVTVSADGVSLYSCPVPVHLKQS-----FLKV 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ + ++F K+ L L K G + +HG++ Q R + L+ FK G + Sbjct: 235 LFNEIEFERVLVFVRTKRWARRLAQRLAKGGLAAADLHGDLSQSKRNRTLNGFKFGDFTV 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+DLAARG+D ++ HV N+D+P+ E ++HR GRTGRA G A+T VA ED + Sbjct: 295 LVATDLAARGIDCSNISHVINYDMPDNVEIFVHRTGRTGRADAKGTAYTFVADEDKARLA 354 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 IE+ + ++ D + N P K+D + P+P K+ R+K+N +K Sbjct: 355 EIEESLGYGLELFYLDTFNYNAP--KLDFSA--------PVPDKN---GRKKRNTQHKK 400 >gi|77359091|ref|YP_338666.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis TAC125] gi|76874002|emb|CAI85223.1| ATP-dependent RNA helicase with nucleoside triP hydrolase domain, putative cold-shock protein [Pseudoalteromonas haloplanktis TAC125] Length = 420 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 149/419 (35%), Positives = 245/419 (58%), Gaps = 11/419 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F+D ++P+VV + ++G+ TPIQ K +P + + D+ G AQTGTGKT +F+ Sbjct: 6 FSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLTATCHR 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ +A + PR LI+ PTRELA Q+ + + + NL + L+ GG +E Q +LE+ Sbjct: 66 LLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179 G D+LI T GR++D + +G +N IE++V+DEADRM D+GFI I+ + +P T R Sbjct: 126 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFHRMPDTSKRL 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +Q+++ + NP+ +++ T + I+ + K LL L+ Sbjct: 186 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELF--HPSQEDKIKLLLTLI 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ + IIF N K + + L+ G V + G+++Q+ R IL+ F +G + + Sbjct: 244 E-EEWPEKAIIFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAEFSKGDLDFL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGL IP+V HVFNFD+P+ E+Y+HRIGRT RAG G A + ++ ++ Sbjct: 303 VATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNLHE 362 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN-NPIPQKSTGFDRRKKNYSSQK 417 IE+ I+ + + D ++L L K I H ++N + P+ + R+ N S QK Sbjct: 363 IEEYIDHSIPLSHYDKTALLDDLTKPTI----HRKRNFSTGPRNRSNNSGRRPNNSYQK 417 >gi|77361885|ref|YP_341460.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125] gi|76876796|emb|CAI88018.1| DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domain [Pseudoalteromonas haloplanktis TAC125] Length = 434 Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 13/368 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F++LGL P+++ + D Y +PTPIQ K IP VL D+ A TG+GKTA+F LP+L Sbjct: 10 FSELGLIPELLARLTDLEYTQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPILQK 69 Query: 61 TILEKGR----ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEA 114 LE+G ++ LIL PTRELA QVAD+ + Y N+N + + GG+ Sbjct: 70 MFLEQGSKSAASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTIAVFGGVSVNT 129 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L GAD+++ TPGR+LD + + ++ + LV+DEADRML +GF + + +L+ Sbjct: 130 QMQALRGGADIIVATPGRLLDLISSNAIKLDKLNTLVLDEADRMLSLGFTEELAELLALM 189 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P +QT+LFSAT ++++ ++++ L +P I+V + + ++ F + K + Sbjct: 190 PAKKQTMLFSATFPEQVKLLTQDLLNDPVEIQVQSKDEST-LVQRVFSVNKGE---KTTV 245 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+++ + +IF N KK+ +L LEK+G + HG+ Q R +++ FK G Sbjct: 246 LAHLIKTHK-WRQALIFVNAKKDCEHLAQKLEKRGVNAQVFHGDKGQSERTRVIEKFKAG 304 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I++++A+D+AARGLDI + V NF++P +Y+HRIGR+GRAG G A +LV ED+ Sbjct: 305 EIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLVDYEDL 364 Query: 355 KHIDAIEK 362 H IEK Sbjct: 365 HHFKIIEK 372 >gi|28871796|ref|NP_794415.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato str. DC3000] gi|28855048|gb|AAO58110.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 442 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 220/371 (59%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNDVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG+ G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|163940245|ref|YP_001645129.1| DEAD/DEAH box helicase domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|163862442|gb|ABY43501.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis KBAB4] Length = 450 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 152/423 (35%), Positives = 242/423 (57%), Gaps = 28/423 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ +++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDDLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------HNHARKNNPIPQKSTGFDRRKKNY 413 EK +L P+++ I Q N P P+KS + +R Sbjct: 360 EK--------------TLGAPIQRQIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSRE 405 Query: 414 SSQ 416 S+ Sbjct: 406 GSR 408 >gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I] gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I] Length = 497 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L L+P +V AV + G+ + TPIQ + IPL ++ D+ G A+TGTGKTA+F +PM+ Sbjct: 2 VKFTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMV 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R + + L++ PTRELA QVA+ + GK + + GG F +Q K LE Sbjct: 62 EAI---RPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKALE 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+L+H R + ++I I V+DEAD+MLDMGFI + I +P RQT Sbjct: 119 ELPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT++ +Q ++ +L++P+ IE T T ++ + +K L +LL Sbjct: 179 LLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEK--QKFEALTRLL- 235 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ + I+F + V L +L ++G+ +HG++ Q R L FK G + ++V Sbjct: 236 DQEKPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P ++Y+HRIGRTGRAG G A T V +D ++AI Sbjct: 296 ATDVAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAI 355 Query: 361 EKLIEKKV 368 E+ I+ ++ Sbjct: 356 EQAIDHQI 363 >gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] Length = 543 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 139/363 (38%), Positives = 223/363 (61%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F LG+S ++ + G +PT +Q K IP+VL+ D+ AQTGTGKT +F+LP+L Sbjct: 22 LNFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPIL 81 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ + LI+ PTRELA Q+ +K ++ +L V + GG E Q KL Sbjct: 82 EKIDPSNGSTQ---ALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKL 138 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +R +++ TPGR+LDH RG + ++ + LV+DEAD+ML +GF+ ++ I S P +RQ Sbjct: 139 QRQTQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPASRQ 198 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM D+++K+S+ L+ P+ I + + IE + T +K+ AL+ ++ Sbjct: 199 TMLFSATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFT-TDRAKQNALISRIR 257 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + IIFC + L +L+ Q FS +HG++ Q R K++ F+ IQ + Sbjct: 258 EDRPFL--AIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFL 315 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ V HV+N+D+P +E+Y+HRIGRTGRAG+ G A T A++D + A Sbjct: 316 IATDVAARGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKA 375 Query: 360 IEK 362 IE+ Sbjct: 376 IEQ 378 >gi|58584965|ref|YP_198538.1| superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419281|gb|AAW71296.1| Superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 408 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 14/360 (3%) Query: 2 DFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 F ++GL P ++ LD + PTP+Q + IPL L+ D+ G AQTGTGKT +F +P++ Sbjct: 3 SFYEMGL-PLLLAQALDKNSFSVPTPVQAQAIPLALKGKDILGSAQTGTGKTLAFAIPLI 61 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKK 118 +L + A L++ PTRELA QV + K KN L +ALLIGG P Q + Sbjct: 62 AKLLGEPNAST----ALVIVPTRELAQQVTNEIGKLLLKNSVLKIALLIGGEPIFRQLNQ 117 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+R ++I TPGRI+DH R L+ NN+ LV+DE DRM DMGF I+ I +P R Sbjct: 118 LQRRPRIVIGTPGRIIDHIERKTLITNNVSTLVLDEVDRMFDMGFGIQIEGIMKYLPKMR 177 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA-LLQQ 237 Q L+FSAT+ ++ K++E + P+R+ V ++T+ I+ + YA S+K L+ Q Sbjct: 178 QNLMFSATLPGDIVKLAEKYSNQPERVSVENEATTSVKIKQEII--YASESEKYGKLVTQ 235 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q + ++ I+F K+ L + L K S AIHG++ QR R +++++F+ G Q Sbjct: 236 LYQRKGSI---IVFVRTKQRADQLAYKLRKDNHSALAIHGDLKQRKRKRVINSFRRGHNQ 292 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +MVA+D+A+RGLDIP + HV N+D P NYIHR GRT RAG G A + + +D K + Sbjct: 293 IMVATDVASRGLDIPHIQHVINYDAPESQANYIHRTGRTARAGAEGYALSFITSQDKKRL 352 >gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis FRI909] Length = 509 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 223/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S K V + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G+ V+ +LIL PTRELA QVA+ ++ K + V + GG+P E Q K L++ Sbjct: 63 KV-VGQQGVQ---SLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q++ + F++ PK I+ + I+ + T + +K L Sbjct: 179 MLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E D N + +L PP K Sbjct: 356 E-------DVNNRRMKALRPPHRK 372 >gi|197119152|ref|YP_002139579.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem] gi|197088512|gb|ACH39783.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem] Length = 482 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 222/381 (58%), Gaps = 9/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + +V + + G+ + TPIQ K +PL L DV G AQTGTGKTA+F++ + Sbjct: 1 MKFTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 T L + PR LIL PTREL Q+ + + GK + + GG+ + Q Sbjct: 61 TKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L+ GAD++I TPGR++D+ + + ++E LVIDEADRM DMGFI ++ I +P Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYD 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT+ + +++ F+ P+++ V TAE +E V + +K LL Sbjct: 181 KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQ--VLYHVSRKEKFPLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+ M+ +IF N K+ L L F I G+++QR RMKIL++FK+GT+ Sbjct: 239 GLLRKMG-MERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +M+A+D+A+RG+ I V HV N+D+P E+Y+HRIGRT RAG G A + ++ + Sbjct: 298 PIMIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFY 357 Query: 357 IDAIEKLIEKKV--DWLNGDL 375 I+ IE I++K+ +W D+ Sbjct: 358 IEPIEDFIKQKIPTEWAEDDM 378 >gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435] gi|123660708|sp|Q4L7W0|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956 gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 503 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 147/384 (38%), Positives = 225/384 (58%), Gaps = 15/384 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S K V + G+ +PTPIQ +IP L+ D+ G AQTGTGKT +F +P++ Sbjct: 3 NFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + G++ V+ LIL PTRELA QVA+ ++ + N+ V + GG+P + Q K L+R Sbjct: 63 KV-VGQSGVQ---ALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKR 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L N I L++DEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++P+ ++ + I+ + T + +K L Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYY--TIVKELEKFDTFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E D +++L PP K Sbjct: 356 E-------DSNGRRMNALRPPHRK 372 >gi|91773889|ref|YP_566581.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM 6242] gi|9581858|gb|AAF89099.1|AF199442_1 DEAD-box RNA helicase [Methanococcoides burtonii] gi|91712904|gb|ABE52831.1| Dead box RNA helicase [Methanococcoides burtonii DSM 6242] Length = 522 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 142/353 (40%), Positives = 214/353 (60%), Gaps = 13/353 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ ++ ++ D + +PT IQ IPL+L+ D+ G A TG+GKT +F ++ Sbjct: 4 FKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGIIQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +EKG R L+L PTRELA QV ++ +++ ++ L VA + GG+ Q ++LER Sbjct: 64 IEKGNG----IRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVAINPQIRQLER- 118 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADV++ TPGR+LDH RG + + ++EILV+DEADRMLDMGFI ++ I P RQT++ Sbjct: 119 ADVVVATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQTMM 178 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT++ ++Q +S ++ NP ++ ++ ++ ++ + K +LL LL+S+ Sbjct: 179 FSATVSKDIQYLSSKYMNNPSKV-FAKAYVDSDKLKQVYIDVPKKM--KFSLLVHLLKSE 235 Query: 243 DTMKNGII--FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 K+G++ FCN + NV + +L K AIHG Q R LS F +V Sbjct: 236 ---KSGLVMVFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSSNAHALV 292 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +D+AARGLDIP V HV+NFD+P+ Y+HRIGRT RAGR GK +VA D Sbjct: 293 CTDVAARGLDIPHVSHVYNFDIPDDPSEYVHRIGRTARAGREGKVINVVADVD 345 >gi|66047524|ref|YP_237365.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63258231|gb|AAY39327.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 442 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ LT GG+ Q K Sbjct: 61 QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|295086065|emb|CBK67588.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens XB1A] Length = 641 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 226/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L+N K I + + + ++H V Q K L++++ Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIISKK 364 >gi|237799048|ref|ZP_04587509.1| helicase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021902|gb|EGI01959.1| helicase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 332 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 134/331 (40%), Positives = 210/331 (63%), Gaps = 7/331 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P +V AV+ GY +P+ IQ ++IP++L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ + R P+ LIL PTRELA QVA FE Y K +TV + GG P Q K + Sbjct: 68 IDPSK---REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH R + ++ + LV+DEAD ML +GF+ ++ I +P TRQT+ Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ ++E L++PK +++ T + T IE + +A +K + + LL+ Sbjct: 185 LFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA--DQKTSAVLSLLEV 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K+ ++L +LE +G+ A++G+I Q R +++ + K+G + ++VA Sbjct: 243 ED-FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332 +D+AARGLD+P + HVFN D+P E+Y+HR Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHR 332 >gi|228968588|ref|ZP_04129573.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar sotto str. T04001] gi|228791080|gb|EEM38697.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar sotto str. T04001] Length = 481 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 224/364 (61%), Gaps = 10/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LLQ 240 FSAT+ ++++K+S ++ +P IE+ T + IEH A +K +LL+ +++ Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFE--AIEDEKFSLLKDVTMIE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D+ IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +V Sbjct: 241 NPDSC---IIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ I Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357 Query: 361 EKLI 364 E I Sbjct: 358 EDYI 361 >gi|330938172|gb|EGH41869.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. pisi str. 1704B] Length = 442 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ LT GG+ Q K Sbjct: 61 QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGMNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|302184790|ref|ZP_07261463.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. syringae 642] Length = 442 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ LT GG+ Q K Sbjct: 61 QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAAASVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|77918349|ref|YP_356164.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380] gi|77544432|gb|ABA87994.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380] Length = 433 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 221/371 (59%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L +V + G+ TP+Q ++IPL L + DV AQTGTGKTA+F++ + Sbjct: 1 MKFTELNLPAEVQRGIDAMGFTALTPVQEQSIPLALDKKDVAAQAQTGTGKTAAFLISLF 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++ + R PR LIL PTREL Q++ + G+ + + GG+ +E Q + L Sbjct: 61 ARLMSDKKTETRAPRALILAPTRELVVQISKDAMGLGQFCGFKIQPIFGGVDYEKQRQAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177 G D+LI TPGR++D+ +G + + +IE LVIDEADRM DMGFI ++ I +P Sbjct: 121 HAGVDILIATPGRLIDYVKQGAVSLGSIEALVIDEADRMFDMGFIRDLRYILRKLPAFDR 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSAT++ + +++ F+ ++I+V + TAE IE V + +K ALL Sbjct: 181 RQTMLFSATLSHRVMELAYEFMDLAEKIKVAPENVTAEQIEE--VLYHVSRREKFALLLG 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ ++ K ++F N K+ +L L+ GF I G+I Q+ RM+IL FKEG I Sbjct: 239 LLK-KEPAKCVMLFVNTKREAEHLTGRLQVNGFKAALISGDIPQKKRMRILDEFKEGRIH 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +V +D+A+RG+ + V HV N+D+P E+Y+HRIGRT RAG GKA + ++ + ++ Sbjct: 298 FLVGTDVASRGIHVDGVTHVINYDLPQDREDYVHRIGRTARAGAAGKAISFADEDLVYYL 357 Query: 358 DAIEKLIEKKV 368 IE I ++ Sbjct: 358 ADIEDYIGHRI 368 >gi|70732712|ref|YP_262475.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5] gi|68347011|gb|AAY94617.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas fluorescens Pf-5] Length = 444 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 153/368 (41%), Positives = 222/368 (60%), Gaps = 5/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLGGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L E + R LIL PTRELA QV ++ +Y ++ L + GG+ Q K Sbjct: 61 QLLTLEGPKVDSNSVRALILVPTRELAEQVHESVRQYAEHLPLRTYAVYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G D+L+ TPGR+LD F + + + ++ LV+DEADRMLD+GF +++I + +P R Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNAVKFSQLQTLVLDEADRMLDLGFSEELKSIYAALPKKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +D +++++ L +P IEV+ + A T++ V +K L L Sbjct: 181 QTLLFSATFSDAIRQLAGQMLNDPLSIEVSPRNVAANTVKQWVVPV--DKKRKPELFSHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++ K ++F + V L L+ QG + IHG+ Q +R + L FK IQ+ Sbjct: 239 LR-KNRWKQVLVFAKTRNGVDALVEKLQGQGVNADGIHGDKPQATRQRALDRFKASEIQI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V NFD+P AE+YIHRIGRTGRAG G+A +LV +++ + Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNLLS 357 Query: 359 AIEKLIEK 366 AIE L + Sbjct: 358 AIEMLTRQ 365 >gi|296447148|ref|ZP_06889079.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium OB3b] gi|296255313|gb|EFH02409.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium OB3b] Length = 447 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 142/333 (42%), Positives = 206/333 (61%), Gaps = 5/333 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL+ ++ A+ GYV PTPIQ + IP +L+ D+ GIAQTGTGKTA+F LP+L Sbjct: 4 FADLGLAEVILRALAQEGYVAPTPIQAQAIPSLLEGRDLLGIAQTGTGKTAAFALPILHR 63 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L E+ R + R L+L PTRELAAQ+AD+F YG+ ++V +++GG+ Q K L Sbjct: 64 LLDERRRPAPQTARALVLAPTRELAAQIADSFRSYGRFARMSVGVIVGGVGHGPQIKMLA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVL+ TPGR+LDH G L ++ +V+DEAD MLD+GF+ I+ I S +P RQ+ Sbjct: 124 SGVDVLVATPGRLLDHIASGALRLDTTRTIVLDEADHMLDLGFLAPIRKIVSRLPKQRQS 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ ++ + L NP ++V ++TAE ++ V +K+ L++ L Sbjct: 184 LFFSATMPKEIAALAADMLNNPVSVQVTPTATTAERVDQ-RVLLVDGAAKRDVLVE--LF 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K+ + LE G AIHGN Q RM+ L +F+ G + +V Sbjct: 241 ADPALACAIVFTRTKRGADRVSQHLEAHGVGSAAIHGNKSQSQRMRALDDFRRGRTRALV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333 A+D+AARG+D+ V HV NF++P E Y+HRI Sbjct: 301 ATDIAARGIDVDGVTHVVNFELPETPEAYVHRI 333 >gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10] gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum H10] Length = 542 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 143/362 (39%), Positives = 213/362 (58%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+S ++ A+ D G+ PT +Q K IP +L D+ +++TG+GKTA F + +L + Sbjct: 5 FNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSILQL 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 A P+ LIL P RELA QV ++ K K + G + + L +G Sbjct: 65 TNPEEA---GPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIYGQHNINLETQILNKG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++ TPGR+ DH + G L NI LV+DEADRMLDMGF+ + I +P R TLL Sbjct: 122 VSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ + + ++ NP IE+ + + T +TI + Y++K L +LL + Sbjct: 182 FSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYY--RVNYNEKNTQLNRLLIVE 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ +IFCN K V + L K+G+S A+HG+I Q R+ + FK+G ++VA+ Sbjct: 240 KP-ESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+ I D+ V N+DVPN +NY+HRIGRTGRAG G+AF+LV +DI + IE+ Sbjct: 299 DVAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIEE 358 Query: 363 LI 364 I Sbjct: 359 HI 360 >gi|238019582|ref|ZP_04600008.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748] gi|237864281|gb|EEP65571.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748] Length = 432 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 141/363 (38%), Positives = 221/363 (60%), Gaps = 6/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ +++ A+ G +PTPIQ + IP+V + +DV AQTGTGKT +F+LP I Sbjct: 4 FKSLGVCDELIQALQKQGIKEPTPIQEQAIPVVFKGNDVIAKAQTGTGKTLAFLLP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++ V + LI+ PTREL Q++D ++ G N+ + LIGG EAQ ++L R Sbjct: 61 LQRVHTDVHQEQVLIIAPTRELVKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGRR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L ++ I +V+DEAD+ML MGF+P I+N+ S RQ LL Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ D+++ +++ ++ P + T E+I+ + +K L ++++ + Sbjct: 181 FSATIPDKIRNLAKAYMSKPASVTAEGKHVTLESIDQRVYMMNTE--EKTQRLIKMIE-E 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D I+FCN+++ V L + L G ++ +HG++ Q R +IL +F + Q++VA+ Sbjct: 238 DNPFLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HV+N+DVP + YIHRIGRTGRAG G A T +D + IE+ Sbjct: 298 DIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIER 357 Query: 363 LIE 365 I+ Sbjct: 358 AIQ 360 >gi|89094261|ref|ZP_01167203.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92] gi|89081516|gb|EAR60746.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92] Length = 592 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 144/374 (38%), Positives = 231/374 (61%), Gaps = 11/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA+LG++ V+ + + GY P+PIQ +IP +L+ D+ GIAQTGTGKTA+F LP+L Sbjct: 7 LSFAELGIAEPVLKVLDEIGYETPSPIQAASIPHLLEGRDLLGIAQTGTGKTAAFSLPLL 66 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + L + R + LIL PTRELA QVA+ + Y +N + V + GG +++Q ++L Sbjct: 67 SRLN---LKSRNTQLLILAPTRELAIQVAEACQTYARNLPDFHVLPIYGGQAYDSQLRQL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RGA V++ TPGR++DH RG L ++ ++ LV+DEAD ML MGFI + + P RQ Sbjct: 124 KRGAQVVVGTPGRVMDHMRRGSLKLDKLQALVLDEADEMLRMGFIDDVNWVLEHTPEDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++ V+E L +P + + ++TA TI ++ ++K + ++L Sbjct: 184 IALFSATMPAQIKSVAEAHLNDPAEVRIKAKTATATTITQKYLRVSG--NQKLDAVTRIL 241 Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + Q D M ++F K V L L +G++ A++G+I Q R + + K G I Sbjct: 242 EMQAFDAM---LVFVRTKSATVELAEKLSARGYACEALNGDISQNLRERTIDKLKRGQID 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+ ARGLD+ + HV N+D+P E+YIHRIGRTGRAGR G+A V+ + + + Sbjct: 299 ILIATDVVARGLDVERISHVLNYDIPYDTESYIHRIGRTGRAGREGEAILFVSPREQRML 358 Query: 358 DAIEKLIEKKVDWL 371 +IE+ +K++ + Sbjct: 359 KSIERATRQKIESM 372 >gi|134046209|ref|YP_001097694.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus maripaludis C5] gi|132663834|gb|ABO35480.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis C5] Length = 541 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 224/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LGLS +++ A+ G+ PTPIQ + IP++++ + D+ G AQTGTGKTA+F +P+L Sbjct: 4 FKNLGLSDEILEALEKKGFTTPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ R + LIL PTRELA QVA+ + + L V + GG + Q ++L R Sbjct: 64 TIDESS---RNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGRILDH +R + + N+ +V+DEAD ML+MGFI ++ I V ++ L Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRML 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ D + K+++N+++ I+V T + F +++ K LL +++ Sbjct: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSR--DKFELLSRIIDL 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + G+IFC K +V + L ++G++ +HG++ Q R K L FK I ++VA Sbjct: 239 EKEF-YGLIFCKTKADVDEVSSRLNEKGYAAEGLHGDMTQAQREKTLDKFKGRKINVLVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI D+ HV N+D+P E+Y+HRIGRTGRAG+ G A T V + + I+ Sbjct: 298 TDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQ 357 Query: 362 KLIEKKV 368 K+ + ++ Sbjct: 358 KIAKTEI 364 >gi|330504745|ref|YP_004381614.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina NK-01] gi|328919031|gb|AEB59862.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina NK-01] Length = 482 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 226/374 (60%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++T Sbjct: 96 FHDFKLAPELMHAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQ 155 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + + K L V +GG+ F+ Q K+ Sbjct: 156 LLQTPAPKERYMGEPRALIIAPTRELVVQIAKDAAELTKYTKLNVMSFVGGMDFDKQLKQ 215 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 216 LESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMK 275 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCAL 234 RQTLLFSAT TD++ +++ + NP +E+ + ++T+E H + A K L Sbjct: 276 GDRQTLLFSATFTDDVMNLAKQWTVNPAIVEIEPENVASDTVEQHVYAVASAD---KYKL 332 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ +Q+ ++F N+K V + L + G S + G++ Q R+K+L F+ G Sbjct: 333 LYNLV-TQNAWDRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQHKRIKVLEGFRAG 391 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+A RG+ + + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 392 HIRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDA 451 Query: 355 KHIDAIEKLIEKKV 368 + IE LI +K+ Sbjct: 452 FALPPIEALIGRKI 465 >gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM 17374] Length = 634 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 221/369 (59%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 FADLGLS + + + G+ +PT IQ + IPL+L ++ DV G A+TGTGKTA+F +P+L Sbjct: 7 FADLGLSARTLDVLKKKGFEEPTQIQKECIPLLLHEKTDVIGQARTGTGKTAAFGIPILE 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ + V+ LIL PTRELA QVAD + L++A + GG Q ++L R Sbjct: 67 TVDEHDSTVQ---ALILAPTRELAVQVADEISSMRPSSGLSIAAIYGGASMSLQLRQLHR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR+ DH +RG L + N++ +V+DEAD MLDMGFI I+NI S P ++ L Sbjct: 124 GVQIVVGTPGRVQDHLDRGTLNLENLKFMVLDEADEMLDMGFIEDIENILSRTPADKRML 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM +Q +++ F+++PK + V ++ + + ++ L+ L + Sbjct: 184 CFSATMPAPIQNLAQRFMKDPKIVRV-----VSQDMTNLLTNQVCYEVRESDKLEALCRV 238 Query: 242 QDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + G++FC K + L +G A+HG++ Q+ R IL+ F+ + ++ Sbjct: 239 IDVAVDFYGLVFCRTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIPD+ HV N+ +P E YIHRIGRTGRAGR G A T + + + Sbjct: 299 VATDVAARGIDIPDLTHVINYSIPQNPEAYIHRIGRTGRAGRSGTAVTFITPREYSKLKY 358 Query: 360 IEKLIEKKV 368 I+++ ++ Sbjct: 359 IQRIAHTEI 367 >gi|229014620|ref|ZP_04171734.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048] gi|228746631|gb|EEL96520.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048] Length = 464 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++V A+ GY PT +Q + IP+ LQR D+ +QTG+GKTASF +P+ + Sbjct: 6 FTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQRKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++K+S ++ +P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHILFEMREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG +GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|294498466|ref|YP_003562166.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] gi|294348403|gb|ADE68732.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] Length = 466 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 148/393 (37%), Positives = 224/393 (56%), Gaps = 17/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS + AV + G+ + TPIQ + IP+ + D+ G AQTGTGKT +F +P++ Sbjct: 4 FSDFNLSKDIEKAVHNLGFEEATPIQAEAIPIAMAGKDLIGQAQTGTGKTTAFGIPLIER 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E G ++ ++L PTRELA QVA+ + G+ + + GG Q K L+ Sbjct: 64 VELGEEGIQ---GIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQIKALKNR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++ TPGR+ DH R + +N+I V+DEAD ML+MGFI IQ+I + QTLL Sbjct: 121 PHIISATPGRLKDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQSILGGISSPHQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLLQ 240 FSATM+ ++Q +++ F+ +P+ ++V T + IE + + ++ C L+ LQ Sbjct: 181 FSATMSKQVQSLAQKFMNDPELVKVKAKELTVKNIEQQYMEIPENRKFDVLCNLVD--LQ 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D I+F KK V L L+K+G++ IHG++ Q R ++ FK TI++MV Sbjct: 239 VPDL---AIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKNHTIEIMV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y+HRIGRTGRAG G A T + + H+ I Sbjct: 296 ATDVAARGLDITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFITPRERNHLKVI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA 393 E + + K +S +PP +A H A Sbjct: 356 EDVTKTK-------MSRQSPPTSSEVMAGHQEA 381 >gi|153953072|ref|YP_001393837.1| ATP-dependent RNA helicase [Clostridium kluyveri DSM 555] gi|219853723|ref|YP_002470845.1| hypothetical protein CKR_0380 [Clostridium kluyveri NBRC 12016] gi|146345953|gb|EDK32489.1| Predicted ATP-dependent RNA helicase [Clostridium kluyveri DSM 555] gi|219567447|dbj|BAH05431.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 481 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 148/412 (35%), Positives = 235/412 (57%), Gaps = 16/412 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F D LS ++ ++ GY P+ +Q K IPL+L+ D+ +QTG+GKTA+F +P Sbjct: 4 LNFKDFQLSNTILESLQKLGYNSPSEVQEKVIPLILKNKDIIVKSQTGSGKTAAFAIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I EK + P+ L+L PTRELA Q+ ++F G+ + + G P Q KKL+ Sbjct: 62 -ICEKIEIEEKNPQALVLTPTRELALQIKEDFSYIGRLKKINCTAVFGKEPISLQIKKLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + V+ TPGRILDH R L++ I+ LVIDEAD ML GF+ ++++ +P R T Sbjct: 121 QRVHVVTGTPGRILDHIERNTLVLEKIKYLVIDEADEMLSRGFMEQVESVIGSLPKNRTT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ DE+ K+ +++NP IEV SS + I + A Y K +LL +++ Sbjct: 181 LLFSATIPDEILKLCNVYMENPLNIEVQCESSVKDRITQMYYKIEAPY--KFSLLNKIIY 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC KKNV +L ++ + +S A+HG + Q R+ + +FK G ++ Sbjct: 239 TERP-DSSMIFCRTKKNVDDLVLQMKARKYSCEALHGGMLQNERIDKIESFKRGEFTFLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+D+ ++ H+ N+D+P ENYIHRIGRTGR +G A T V ++ ++ I Sbjct: 298 CTDIAARGIDVENITHIINYDIPMERENYIHRIGRTGRFTSNGTAITFVTPKEYLYLKKI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ----KSTGFDR 408 E+ + G + P LE+++ + K P+ KST F+R Sbjct: 358 EEYFH--ITIKEGSI----PSLEEVETGKKLFYEKLKSAPKRKEDKSTKFNR 403 >gi|160880145|ref|YP_001559113.1| DEAD/DEAH box helicase domain-containing protein [Clostridium phytofermentans ISDg] gi|160428811|gb|ABX42374.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans ISDg] Length = 483 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 219/363 (60%), Gaps = 10/363 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +++ A+ Y++PTPIQ K IPL L+ D+ ++TG+GKTA+F +P I Sbjct: 6 FTQYKLCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIP---I 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E +P+ L+LEPTRELA QV D G+ + V ++ GG PF+ Q L++ Sbjct: 63 CESIVWEENLPQALVLEPTRELAYQVKDEIFNVGRMKRVKVPVVFGGFPFDKQALTLKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 + +++ TPGR+LDH G L +N++ ++IDEAD MLDMGF+ ++ I S +P +L Sbjct: 123 SHIVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQ 240 FSATM + L +++ F+ +P +++ + T ++IE CFV +Y L+ L + Sbjct: 183 FSATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYE---LFLRMLYK 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + T N +IFC ++ V L + L+K+ +HG IDQ+ R+ + +F+ G + ++ Sbjct: 240 NNPT--NAMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D D+ HV N+D+P E Y+HRIGRTGR G+ GKA + + +E+ K + I Sbjct: 298 ATDVAARGVDFDDITHVINYDLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLI 357 Query: 361 EKL 363 EK Sbjct: 358 EKF 360 >gi|229017793|ref|ZP_04174677.1| ATP-dependent RNA helicase [Bacillus cereus AH1273] gi|229024016|ref|ZP_04180493.1| ATP-dependent RNA helicase [Bacillus cereus AH1272] gi|228737285|gb|EEL87803.1| ATP-dependent RNA helicase [Bacillus cereus AH1272] gi|228743484|gb|EEL93600.1| ATP-dependent RNA helicase [Bacillus cereus AH1273] Length = 450 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 152/423 (35%), Positives = 242/423 (57%), Gaps = 28/423 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPASKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQ-------HNHARKNNPIPQKSTGFDRRKKNY 413 EK +L P+++ I Q N P P+KS + +R Sbjct: 360 EK--------------TLGAPIQRQIIEQPMIKNVDENGKPVQKPAPKKSGQYRQRDSRE 405 Query: 414 SSQ 416 S+ Sbjct: 406 GSR 408 >gi|253700068|ref|YP_003021257.1| DEAD/DEAH box helicase [Geobacter sp. M21] gi|251774918|gb|ACT17499.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21] Length = 490 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 222/381 (58%), Gaps = 9/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + +V + + G+ + TPIQ K +PL L DV G AQTGTGKTA+F++ + Sbjct: 1 MKFTELKIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 T L + PR LIL PTREL Q+ + + GK + + GG+ + Q Sbjct: 61 TKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L+ GAD++I TPGR++D+ + + ++E LVIDEADRM DMGFI ++ I +P Sbjct: 121 LKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYD 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT+ + +++ F+ P+++ V TAE +E V + +K LL Sbjct: 181 KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQ--VLYHVSRKEKFPLLL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+ M+ +IF N K+ L L F I G+++QR RMKIL++FK+GT+ Sbjct: 239 GLLRKMG-MERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTL 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +M+A+D+A+RG+ I V HV N+D+P E+Y+HRIGRT RAG G A + ++ + Sbjct: 298 PIMIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFY 357 Query: 357 IDAIEKLIEKKV--DWLNGDL 375 I+ IE I++K+ +W D+ Sbjct: 358 IEPIEDFIKQKIPTEWAEDDM 378 >gi|313675031|ref|YP_004053027.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM 4126] gi|312941729|gb|ADR20919.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM 4126] Length = 590 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 225/368 (61%), Gaps = 8/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 + F +LGL P+++ A+L+ G+V+PT IQ KTIP +L + D+ +AQTG+GKTA+F LP+ Sbjct: 2 LTFEELGLKPEILKAILEIGFVEPTAIQQKTIPHLLNTKQDLIALAQTGSGKTAAFGLPV 61 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKK 118 + ++ + + +L+L PTRELA Q+A++F Y K + L V + GG E Q K Sbjct: 62 INQIDSDSKKTQ---SLVLCPTRELAIQIANDFNSYTKYSKKLDVVPVYGGASIETQIKA 118 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G +++ TPGR++D R KL + +IE +V+DEAD ML+MGF + I S P R Sbjct: 119 LNKGVQIVVGTPGRVVDLIKRKKLKLEDIEWVVLDEADEMLNMGFKDDLDFILSHTPDQR 178 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM+ E+ ++S N++ P+ I + A+ +EH + + K AL + Sbjct: 179 QTLLFSATMSKEVLRISNNYMNKPEEISSGKRNQGADKVEHFYFVVNGR-DKYLALKRIA 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + D IIFC K+ + L G++ +HG++ Q R ++ +++ +Q+ Sbjct: 238 DINPDIY--AIIFCRTKRETQEISDQLMADGYNADCLHGDLSQAQRDAVMGRYRKKNLQM 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ ++ HV N+++P+ E Y HR GRTGRAG+ G + ++ DI I Sbjct: 296 LVATDVAARGLDVNEITHVINYNIPDDLETYTHRSGRTGRAGKAGISMAIIGPRDINKIK 355 Query: 359 AIEKLIEK 366 +E+++ K Sbjct: 356 QLERILGK 363 >gi|229136279|ref|ZP_04265026.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196] gi|228647151|gb|EEL03239.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196] Length = 481 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 223/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L ++ ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLDCLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++K+S ++ +P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG +GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|228911292|ref|ZP_04075096.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200] gi|228848310|gb|EEM93160.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200] Length = 481 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 135/364 (37%), Positives = 225/364 (61%), Gaps = 10/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LLQ 240 FSAT+ ++++K+S ++ +P IE+ T + IEH + +K +LL+ +++ Sbjct: 183 FSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVTEE--EKLSLLKDVTIIE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D+ IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +V Sbjct: 241 NPDSC---IIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ I Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357 Query: 361 EKLI 364 E+ I Sbjct: 358 EEYI 361 >gi|71277821|ref|YP_268464.1| RNA helicase DeaD [Colwellia psychrerythraea 34H] gi|71143561|gb|AAZ24034.1| RNA helicase DeaD [Colwellia psychrerythraea 34H] Length = 611 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 151/379 (39%), Positives = 224/379 (59%), Gaps = 13/379 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++ AVL G+ T IQ TIP +L DV G AQTGTGKTA+F LP L Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ ++ P+ ++L PTRELA QVA+ E +GK+ L VA L GG + Q ++LER Sbjct: 77 IDTS---IKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLER 133 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH R L ++ + + V+DEAD ML+MGF+ IQ I +P T Q Sbjct: 134 GAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMC 193 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL--LQQLL 239 LFSATM ++K++ FL++P+ I+V I + + +K AL + +++ Sbjct: 194 LFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQ-YAWKVSGITKMTALERIAEVV 252 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D M IIF + + V++ LE+ G+ A++G+++Q R + + K G ++ Sbjct: 253 E-YDAM---IIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSIL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLDIP + V N+D+P E Y+HRIGRTGRAGR G + V ++ I Sbjct: 309 VATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRH 368 Query: 360 IEKLIEKKVDWLNGDLSSL 378 E+L V LN DL ++ Sbjct: 369 YERLTNGTV--LNYDLPNI 385 >gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061] gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii DSM 2375] gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM 2374] gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061] gi|222434510|gb|EEE41675.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii DSM 2375] gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM 2374] Length = 429 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 223/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D + ++ ++ + G+ +P+PIQ TIP L+ D+ G AQTGTGKT +F +P+L Sbjct: 6 FDDFEILAEIKKSIKEMGFEEPSPIQELTIPEALKGIDIIGQAQTGTGKTLAFTVPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 +K P+ ++L PTREL QVA K G + L + + GG P Q + L + Sbjct: 64 -QKIFIPDNSPQAIVLCPTRELCIQVAGEIGKIGSHMKKLKILPVYGGQPIGRQIRVLNK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR+LDH R L + I +V+DEAD MLDMGF I+ I P RQTL Sbjct: 123 GVHVVIGTPGRVLDHIERKTLDLKGISTVVLDEADEMLDMGFREDIEKILRHTPKQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++++ + + PK ++V T I + T + K L +L+ Sbjct: 183 LFSATMPKEIKRITKFYQKKPKHLKVAQSQMTVPEITQYYFET--KEKDKLENLTRLIDV 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + G++FCN KK V + +L +G++ IHG+++Q+SR K+++ F+ G I++++A Sbjct: 241 YD-VNLGLVFCNTKKRVDWVAKNLRNRGYAAEGIHGDMNQKSRDKVMNKFRNGNIEILIA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+P+V V N+DVP E Y+HRIGRTGRAG G AFT VA ++I + I+ Sbjct: 300 TDVAARGIDVPNVEVVVNYDVPQNPEYYVHRIGRTGRAGNMGYAFTFVAGKEIYSLRTIK 359 Query: 362 KLIEKKV 368 K+ + K+ Sbjct: 360 KVTKSKI 366 >gi|332885949|gb|EGK06193.1| hypothetical protein HMPREF9456_00067 [Dysgonomonas mossii DSM 22836] Length = 608 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 227/369 (61%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ + A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP Sbjct: 4 FEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETNDVIALAQTGTGKTAAFGLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 IL+K + +P+ LIL PTREL Q+A + Y K NL V + GG E+Q K L+ Sbjct: 61 ILQKIDIKQNVPQALILCPTRELCLQIAGDLSDYSKYIDNLRVLPVYGGSSIESQIKSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D NR + ++N++ +V+DE+D ML+MGF+ I I S VP R Sbjct: 121 RGVQIIVATPGRLIDLINRRTVELSNVKYVVLDESDEMLNMGFMESIDEILSKVPDERLM 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+ K+++ ++QNPK I + + + +++H + +A+ K L+++ Sbjct: 181 LLFSATMPKEIAKITKKYMQNPKEITIGRKNEGSNSVKHVYYLVHAK--DKYLALKRIAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC ++ + L + G++ ++HG++ Q R ++ F+ IQL+V Sbjct: 239 YYPNI-YGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIKNIQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+ +P+ E+Y HR GRTGRAG+ G + ++ ++ + I Sbjct: 298 ATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSIAIIHVKEKGKVREI 357 Query: 361 EKLIEKKVD 369 EK+I KK + Sbjct: 358 EKIINKKFE 366 >gi|269104240|ref|ZP_06156936.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] gi|268160880|gb|EEZ39377.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] Length = 431 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 218/371 (58%), Gaps = 18/371 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L ++ V ++GY +PTPIQ + IP VL DV A TG GKTA+F LP+L Sbjct: 10 FTELALIQPLLARVTESGYQQPTPIQGQVIPNVLAGRDVIAGANTGAGKTAAFALPILQE 69 Query: 63 L--------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPF 112 L GR R L+L PTRELA QVAD+ Y ++N + A + GG+ Sbjct: 70 LYSQKQSDQTHGR-RGNFVSALVLVPTRELARQVADSITSYSAHFNGAIKTAAVYGGVST 128 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 AQ +L GAD+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + N+ + Sbjct: 129 NAQMLELRHGADILVATPGRLLDLVDHNAIKLDRVKTLVLDEADRMLSLGFTEELTNVLN 188 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKK 231 +P +QTLLFSAT +++Q ++++ L NP +E+ S A TIE H + + K Sbjct: 189 QLPKQKQTLLFSATFPEQVQSLTQDLLNNP--VEIQIQSDDASTIEQHVYTVNKGE---K 243 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 A+L L++ Q+ + ++F K + +L L K+G HG+ Q SR +I+ +F Sbjct: 244 TAVLAHLIK-QNQWRQALVFVAAKNSCKHLAEKLHKRGIEAEVFHGDKAQSSRTRIIEDF 302 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K G I++++A+D+AARGLDI + V N D+P +Y+HRIGR+GRAG G A +L+ Sbjct: 303 KSGKIEVLIATDIAARGLDIEKLPVVINVDLPRSPSDYMHRIGRSGRAGEAGLAISLIDY 362 Query: 352 EDIKHIDAIEK 362 ED H IEK Sbjct: 363 EDFHHFKVIEK 373 >gi|222098932|ref|YP_002532990.1| ATP-dependent RNA helicase [Bacillus cereus Q1] gi|229199584|ref|ZP_04326245.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293] gi|221242991|gb|ACM15701.1| ATP-dependent RNA helicase [Bacillus cereus Q1] gi|228583989|gb|EEK42146.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293] Length = 481 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 221/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++V A+ GY PT +Q K IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FFEYKLSKEIVRALTGLGYDHPTEVQGKVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWAENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH A +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFE--AIEDEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402] gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7] gi|167702881|gb|EDS17460.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402] gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7] Length = 535 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 233/369 (63%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +V+ A+ D G+ KP+ IQ + IP++L DV G AQTGTGKT +F +L+ Sbjct: 6 FNELGLSNEVLKAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + ++ ++P+ +IL PTRELA Q+ + E+ GK + + GG E Q + +++G Sbjct: 66 ITP--SQRKLPQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIKKG 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR++D R L +N+++ +V+DEAD ML+MGF+ I+ I V RQT+L Sbjct: 124 IDIIVGTPGRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDRQTIL 183 Query: 183 FSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 FSATM ++K+++N++ N + + V + +TA +++ + V ++ C L+ Sbjct: 184 FSATMPAGIKKIAQNYMHDNFEHVAVLSKQTTATSVKQFYYEVKQKDRFEAMCRLIDVA- 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ GIIFC K++V + +++ ++V A+HG++ Q RM L FK+GTI + Sbjct: 243 ----NVQTGIIFCRTKRSVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ +V HV N+++P E+Y+HRIGRTGRA + G+A++++ + + Sbjct: 299 IATDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGQAYSIITPREKGFLRQ 358 Query: 360 IEKLIEKKV 368 IE++ + + Sbjct: 359 IERVTKSSI 367 >gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 605 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 140/374 (37%), Positives = 219/374 (58%), Gaps = 10/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FAD G+ ++V A+ D G P PIQ T+P+ LQ HD+ G A+TGTGKT F +P+L Sbjct: 68 VSFADFGVRQEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPLL 127 Query: 61 TIL----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112 + E G + P + +++ PTRELA QVA + + +L V + GG + Sbjct: 128 NRVVAPGEPGWDELVAPGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRAY 187 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q ++L+RGA+V++ TPGR++D N+G L + E +V+DEAD MLD+GF+P ++ I S Sbjct: 188 EPQIEQLQRGAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKILS 247 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KK 231 +P R T+LFSATM + ++ ++ P I P T+++ Y ++ K Sbjct: 248 RLPAKRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYRAHALDK 307 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 +L +LLQ++ ++ I+F K+ + L +GF+ AIHG++ Q +R + L Sbjct: 308 IEVLARLLQAEGRGRS-IVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRAL 366 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G I ++VA+D+AARG+D+ DV HV N+ P Y+HR+GRTGRAG G A T V Sbjct: 367 RHGKIDVLVATDVAARGIDVDDVTHVVNYQCPEDERTYLHRVGRTGRAGNKGTAVTFVDW 426 Query: 352 EDIKHIDAIEKLIE 365 +D+ I+K +E Sbjct: 427 DDMPRWSLIDKALE 440 >gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3894-4] Length = 644 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 220/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 66 NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL+NP+ ++V + T +E + +K + +LL Sbjct: 183 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HV+N+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 360 IERVTRSSME 369 >gi|83648397|ref|YP_436832.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396] gi|83636440|gb|ABC32407.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396] Length = 593 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 140/346 (40%), Positives = 214/346 (61%), Gaps = 9/346 (2%) Query: 18 DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLI 77 D GY +P+PIQ ++IPL+LQ + G+AQTGTGKTA+F LP+L L+ +++ P+ ++ Sbjct: 29 DVGYEQPSPIQEQSIPLLLQGESILGVAQTGTGKTAAFALPLLERLD---PKIQSPQIIV 85 Query: 78 LEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136 L PTRELA QVA+ F+ Y + + TV + GG Q + L+RG V++ TPGR+LDH Sbjct: 86 LAPTRELAIQVAEAFKSYSRYLPDFTVLPIYGGQDMRGQLRSLKRGVQVIVGTPGRVLDH 145 Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196 R L ++ I +V+DEAD ML MGFI ++ I S P Q LFSATM +++V+E Sbjct: 146 LQRKSLDLSQIRAVVLDEADEMLRMGFIDDVEEILSNAPGECQYALFSATMPPAIKRVAE 205 Query: 197 NFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255 +L+ K + + +ST E I +H + S K L ++L+ ++ + IIF K Sbjct: 206 KYLKGAKEVRIAAKTSTVERISQHVLMV---DNSHKLDALTRVLEVEN-FEGMIIFVRTK 261 Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315 L L+ +G++ A++G+ Q+ R + + K+G + ++VA+D+AARGLD+ +G Sbjct: 262 SATTELAEKLQARGYAAEALNGDQTQKIREQTIDRLKKGRLDIVVATDVAARGLDVERIG 321 Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 V N+D+P E Y+HRIGRTGRAGR GKA A ++ + + AIE Sbjct: 322 LVLNYDIPYDTEAYVHRIGRTGRAGREGKAILFAAPKERRLLRAIE 367 >gi|229164405|ref|ZP_04292334.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803] gi|228619055|gb|EEK75952.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803] Length = 481 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 224/363 (61%), Gaps = 6/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++ L+ ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ Sbjct: 5 NFSNYALNKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 65 MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+ Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++++K+S ++ +P IE+ T + IEH + +K +LL+ + Sbjct: 182 LFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVGEE--EKLSLLKDVTTI 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA Sbjct: 240 ENP-DSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG+ GKA T + + + ++ IE Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGKKGKAITFITPYENRFLEEIE 358 Query: 362 KLI 364 I Sbjct: 359 TYI 361 >gi|150401787|ref|YP_001325553.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150014490|gb|ABR56941.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus Nankai-3] Length = 529 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 142/366 (38%), Positives = 220/366 (60%), Gaps = 15/366 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60 +F +LGL V A+ G+ PTPIQ K IP++L +DV G AQTGTGKTA+F LP++ Sbjct: 5 EFLELGLCENTVEALEKKGFKHPTPIQKKAIPMLLDGDYDVVGQAQTGTGKTAAFGLPII 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE V+ +IL PTRELA QV+D + NL + + GG P + Q ++L+ Sbjct: 65 EKLENTDKEVQ---AIILTPTRELALQVSDELNSLRGSKNLKIVAMYGGQPIQEQIRQLK 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G +V++ TPGRI+DH RG L ++ I+ V+DEAD MLDMGFI I++I ++ Sbjct: 122 KGVNVVVGTPGRIMDHLKRGTLRLHTIKYFVLDEADEMLDMGFIDDIEDILRYTNPDKKM 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 LLFSAT+ + +++ ++ K I V + + T + +E + V + ++ C ++ Sbjct: 182 LLFSATLPRRIMGLAKRYMGKYKVISVKSENLTTDMVEQVYYEVRSSDKFEALCRVI--- 238 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GI+FC + V ++ + L +G+ +HG+I Q R KIL+ FK Sbjct: 239 ----DINKEFYGIVFCKTRAEVNDIANKLSAKGYFAEGLHGDIAQNQREKILNRFKAKRT 294 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+AARG+D+ D+ HV N+D+P E Y+HRIGRTGRAG+ G A T V ++ + Sbjct: 295 KILVATDVAARGIDVTDLTHVVNYDIPQNPEAYVHRIGRTGRAGKRGTAITFVQPDEFRR 354 Query: 357 IDAIEK 362 + I++ Sbjct: 355 LKDIKR 360 >gi|153807208|ref|ZP_01959876.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185] gi|149130328|gb|EDM21538.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185] Length = 640 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 227/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L+N K I + + + ++H +A+ K L++++ Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTSNVKHVAYTVHAK--DKYEALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|229072918|ref|ZP_04206114.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185] gi|228710164|gb|EEL62142.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185] Length = 481 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|332306838|ref|YP_004434689.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174167|gb|AEE23421.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 428 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 139/374 (37%), Positives = 229/374 (61%), Gaps = 5/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+ L L+P + A+ GY K TPIQ K I + + DV AQTGTGKTA+F +P+L Sbjct: 1 MNFSSLDLAPALQQAIDACGYKKMTPIQQKAIVVARRGRDVLASAQTGTGKTAAFAIPIL 60 Query: 61 T-ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+K + V R +IL PTRELA Q+A N Y + +++V L GG+ Q K Sbjct: 61 QQMLDKPKETVSGTTRAIILTPTRELAEQLASNIANYAQFTDISVTALYGGVKLGGQASK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D++I TPGR+L+H + + N+E +V+DEADRMLDMGFI ++ + + + R Sbjct: 121 LKAGVDIVISTPGRLLEHMTLKNIELANVEFVVLDEADRMLDMGFISDVRQMLAQIRAVR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT++ + +++ L+N + I +S A+T++H + K L + L Sbjct: 181 QTLLFSATISPTVNELAHKLLKNHEEIRATQLNSAADTVQHVMYPVSEE--DKIRLFKTL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L Q+ + ++F + K+ L +L+ + H + Q +R + +++FK +Q+ Sbjct: 239 LAEQNWYQV-LVFTSTKEQADKLMAALKNSKINAGVCHADKSQGARRRAIADFKSAKLQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+++AARG+DI + HV N+++P E+Y+HRIGRTGRAG+ G A + V++E+ + ++ Sbjct: 298 LIATEVAARGIDIQGLDHVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVE 357 Query: 359 AIEKLIEKKVDWLN 372 IE+LI K+ ++ Sbjct: 358 RIERLINCKIKRIS 371 >gi|114563875|ref|YP_751389.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335168|gb|ABI72550.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 428 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 215/366 (58%), Gaps = 11/366 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ GL ++ + + Y++PTPIQ +TIP L D+ A TG+GKTA+F LP+L Sbjct: 10 FAEFGLHTPLLARLTELKYLQPTPIQAETIPSTLTGKDLLAGANTGSGKTAAFALPILHQ 69 Query: 63 LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQN 116 L RA L+L PTRELA QVAD+F+ Y + N + V GG+ Q Sbjct: 70 LVSRRAATSAKGNFVSALVLVPTRELAKQVADSFKSYAVHLNGDIKVVAAFGGVSVNTQM 129 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L GADV++ TPGR+LD + L ++ + LV+DEADRML +GF + + +L+P Sbjct: 130 LALRGGADVVVATPGRLLDLVSSNALKLSQVTTLVLDEADRMLSLGFTEELTQVLNLLPK 189 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +QTLLFSAT DE++++++ L NP +E+ S+ A T+ + KK ALL Sbjct: 190 QKQTLLFSATFPDEVRQLTQALLVNP--LEIQLQSAEASTLVQRVMTV--NREKKTALLA 245 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LLQ Q + +IF K + +L L K+G + HG+ Q +R ++L FK G I Sbjct: 246 HLLQ-QHQWRQVLIFVGAKNSCNHLAQKLAKRGITAEVFHGDKAQGARSRVLEGFKAGDI 304 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q+++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A TL++ ++ H Sbjct: 305 QVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALTLLSHDEYHH 364 Query: 357 IDAIEK 362 IEK Sbjct: 365 FSVIEK 370 >gi|260172628|ref|ZP_05759040.1| ATP-dependent RNA helicase [Bacteroides sp. D2] gi|315920918|ref|ZP_07917158.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694793|gb|EFS31628.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 644 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 226/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QVD---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L+N K I + + + ++H V Q K L++++ Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIISKK 364 >gi|228908214|ref|ZP_04072060.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200] gi|228851412|gb|EEM96220.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200] Length = 454 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 144/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKINPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3] gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3] Length = 646 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 219/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L L+ ++ A+ G+V PTPIQ IPL+L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + + + P+ +I+ PTRELA QVA + G++ L V + GG Q + L Sbjct: 66 NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA +++ TPGR+ D R +L ++ V+DEAD ML MGF+ + I P + Q Sbjct: 123 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++ + + +L+NP +++V + T + + F +K + +LL Sbjct: 183 RVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNFWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + ++ Sbjct: 360 IERVTKSTME 369 >gi|124026185|ref|YP_001015301.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A] gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A] Length = 589 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 224/386 (58%), Gaps = 21/386 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ S +++ + D GY PTPIQ IP +L D+ G AQTGTGKTA+F LP I Sbjct: 38 FSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALP---I 94 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE+ + V P+ L+L PTRELA QVA++F Y + + V + GG F Q L R Sbjct: 95 LERLKKNVGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRR 154 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR++DH + L +++ LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 155 GVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLV 214 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S+ +L +P I + I +++ Y K LQ++L++ Sbjct: 215 LFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVY--KVNALQRVLEA 272 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K + + LE G++V ++G+I Q R + + ++G+I ++VA Sbjct: 273 V-SEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVA 331 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D+P E Y+HRIGRTGRAGR+G+A V + + +E Sbjct: 332 TDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPRERSFLSNLE 391 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDI 387 + ++ P+EK+DI Sbjct: 392 R--------------AVGQPIEKMDI 403 >gi|282899322|ref|ZP_06307291.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii CS-505] gi|281195779|gb|EFA70707.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii CS-505] Length = 497 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/362 (38%), Positives = 214/362 (59%), Gaps = 5/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LG+SP+ + + G+ PT IQ + IP +L DV G +QTGTGKTA+F LP+L Sbjct: 4 ITFQELGISPERATHLENMGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + R + L+L PTRELA QV D ++ + L V + GG + Q +L+ Sbjct: 64 ERLDPNK---RAVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++D RG L ++ ++ V+DEAD ML MGFI + I S P RQT Sbjct: 121 RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQNRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++ FL +P + V P +T I ++K A LQ +L+ Sbjct: 181 ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKA-LQPILE 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + +IF ++ L + L+ G SV HG++ Q++R ++L+ F+ ++ +V Sbjct: 240 MEDP-ETALIFVRTRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV NFD+P+ E Y+HRIGRTGRAG+ G A +LV + + A Sbjct: 299 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 358 Query: 361 EK 362 E+ Sbjct: 359 ER 360 >gi|229007762|ref|ZP_04165353.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4] gi|228753532|gb|EEM02979.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4] Length = 481 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 222/364 (60%), Gaps = 10/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++V A+ Y +PT +Q K IP+ L++ D+ +QTG+GKTASF +P+ + Sbjct: 6 FKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ LIL PTRELA QV ++ G+ + + G PF Q +L++ Sbjct: 66 VEWEENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFVRQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--LQ 240 FSAT+ ++++ +S ++++P IE+ T + IEH + + +K +LLQ + L+ Sbjct: 183 FSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREE--EKFSLLQDITTLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D+ IIFC ++NV ++ L++ G+ IHG + Q R ++++FK G + +V Sbjct: 241 NPDSC---IIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T V + + + I Sbjct: 298 ATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEI 357 Query: 361 EKLI 364 E+ I Sbjct: 358 EEYI 361 >gi|161501867|ref|NP_762119.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6] gi|319999566|gb|AAO07109.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6] Length = 459 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 223/363 (61%), Gaps = 7/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P+++ + GY + TPIQ +++PLVL DV G +TG+GKTA+F L +L+ Sbjct: 5 FNTLSLKPELLSTLDTLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSN 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 65 LNVSRFRVQ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ + + LV+DEADRML+MGF I I + P RQTL Sbjct: 122 GAHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDVAPTQRQTL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++ ++ +QNP+ ++V + + TIE F + AL LL Sbjct: 182 LFSATFPEQIETIASKVMQNPEMVKVES-THQKSTIEQRFYQLENTEERDNALEALLLTH 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN KK V N+ L + FSV +HG+++QR R + L+ F +I ++VA Sbjct: 241 RP--ESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ V NF++ E ++HRIGRTGRAG G A + +++++ ++ IE Sbjct: 299 TDVAARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIE 358 Query: 362 KLI 364 + + Sbjct: 359 EYM 361 >gi|239918016|ref|YP_002957574.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665] gi|239839223|gb|ACS31020.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665] Length = 611 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 213/375 (56%), Gaps = 16/375 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FAD G+ P +V A+ G V P PIQ T+P+ L HD+ G A+TGTGKT F +P L Sbjct: 39 FADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQR 98 Query: 61 ----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 + KG A P+ LI+ PTRELA QVA + L +A + GG Sbjct: 99 AIGPGEPGWDGLEAKGTAGA--PQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGR 156 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 +E Q ++L+RG ++++ TPGR++D + L ++ + +V+DEAD MLD+GF+P ++ + Sbjct: 157 AYEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETL 216 Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYS 229 + VP RQT+LFSATM + ++ ++ P I P T + Y A + Sbjct: 217 LAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHM 276 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K L+ + LQ++ + IIF K+ + L +GF+ A+HG++ Q +R + L Sbjct: 277 DKDELVARALQAEGRGRT-IIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALR 335 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 F+ G + ++VA+D+AARG+D+ DV HVFNF P + Y+HR+GRTGRAG G A TLV Sbjct: 336 AFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395 Query: 350 AKEDIKHIDAIEKLI 364 ED+ I+K + Sbjct: 396 DWEDMPRWSLIDKAL 410 >gi|255079166|ref|XP_002503163.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299] gi|226518429|gb|ACO64421.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299] Length = 450 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 154/423 (36%), Positives = 245/423 (57%), Gaps = 15/423 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +G+ ++ A D G+ P+ IQ ++IP LQ DV G+AQTG+GKT +F LP+L Sbjct: 17 FLGIGVCEELAEAAADLGWKAPSEIQAQSIPQALQGKDVIGLAQTGSGKTGAFALPILQE 76 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+K +A L+L PTRELA Q+A+ FE G + A+L+GGI AQ+ +L + Sbjct: 77 LLDKPQAFF----ALVLSPTRELAIQIAEQFEALGAGIGVKTAVLVGGIDMMAQSIQLGK 132 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR++DH K + +++L +DEADR+L++ F I I +VP R+T Sbjct: 133 RPHVVVGTPGRVVDHLTNTKGFTLKQLQVLCLDEADRLLNLDFEQEIDQILKVVPRDRRT 192 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA---LLQQ 237 LFSATMT ++ K+ L+NP ++EV+ ST ++++ ++ A++ K C L + Sbjct: 193 QLFSATMTSKVAKLQRACLRNPVKVEVSAKYSTVDSLKQNYLFIPAKH-KDCYVNYLFNE 251 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L S TM C+Q + + + +L GF IHG + Q R+ L+ FK G Sbjct: 252 L--SSSTMMVFTRTCDQTRKLALVARNL---GFGAIPIHGQMSQPKRIGALNKFKAGERN 306 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+A+RGLDIP V V N+DVP +++Y+HR+GRT RAGR G A T+V + D++ Sbjct: 307 ILVATDVASRGLDIPAVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAITMVTQYDVELY 366 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 IE+LI+KK+D + ++ E+++ AQ ++ K G R + + Sbjct: 367 QKIERLIQKKLDAYDAPEEAVLLMNERVNEAQRIAQQQMREADAKGGGKKRNRDGDGEED 426 Query: 418 SHI 420 S + Sbjct: 427 SQL 429 >gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Prochlorococcus marinus str. NATL2A] gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. NATL2A] Length = 589 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 224/386 (58%), Gaps = 21/386 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ S +++ + D GY PTPIQ IP +L D+ G AQTGTGKTA+F LP I Sbjct: 38 FSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALP---I 94 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE+ + V P+ L+L PTRELA QVA++F Y + + V + GG F Q L R Sbjct: 95 LERLKKNVGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRR 154 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR++DH + L +++ LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 155 GVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLV 214 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S+ +L +P I + I +++ Y K LQ++L++ Sbjct: 215 LFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVY--KVNALQRVLEA 272 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K + + LE G++V ++G+I Q R + + ++G+I ++VA Sbjct: 273 V-SEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVA 331 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D+P E Y+HRIGRTGRAGR+G+A V + + +E Sbjct: 332 TDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPRERSFLSNLE 391 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDI 387 + ++ P+EK+DI Sbjct: 392 R--------------AVGQPIEKMDI 403 >gi|323490311|ref|ZP_08095526.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2] gi|323395981|gb|EGA88812.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2] Length = 481 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 222/364 (60%), Gaps = 10/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + +S ++V A+ GY +PT +Q K IP+ L + D+ +QTG+GKTA+F +P+ + Sbjct: 6 FDEYQISEQIVKALDGLGYTEPTEVQEKVIPVALSKTDLTVKSQTGSGKTAAFGIPICEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + P+ LIL PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VDWEENK---PQALILTPTRELADQVKEDITNIGRFKRIKAAAVYGKQPFAYQQAELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L + IE LV+DEAD ML+MGF+ +++I + +P R T+L Sbjct: 123 CHVVVGTPGRVLDHIERGTLKLEQIEYLVLDEADEMLNMGFVEQVESIINKLPKQRTTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LLQ 240 FSAT+ + ++K+ + ++ +P+ IE+ + + + I+H Q KK +LL+ +++ Sbjct: 183 FSATLPENVEKLQKKYMIDPQHIEIASTETLTDQIDHSLFVVAEQ--KKFSLLRDVTIIE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D+ IIFC K NV + LEK ++ +HG + Q R +++ FK G + +V Sbjct: 241 NPDSC---IIFCRTKDNVDFVMEQLEKHYYTCDKLHGGMLQEDRTAVMNEFKRGEFRYLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + HV NFD+P E+Y+HR GRTGRAG+ GKA + V + K + I Sbjct: 298 ATDVAARGIDIDSITHVINFDLPMEKESYVHRSGRTGRAGKTGKAISFVTPNEDKFLAEI 357 Query: 361 EKLI 364 E I Sbjct: 358 ESYI 361 >gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000] gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000] Length = 868 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 147/390 (37%), Positives = 223/390 (57%), Gaps = 21/390 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F +LG+ P+ A+ G + P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 42 FRELGILPETAEALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 101 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRAR P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 102 VTVPADVEAGRARPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAY 161 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL + +++ LV+DEAD MLD+GF+P ++ I + Sbjct: 162 EPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIIN 221 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231 +P RQT+LFSATM + ++ ++ P I P T+ + Y A K Sbjct: 222 FLPVKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFVYRAHNMDK 281 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ+ D ++FC K+ +L L+++GF+ A+HG++ Q +R + L F Sbjct: 282 PEMVSRILQA-DGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 340 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TLV Sbjct: 341 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGTAITLVDW 400 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 +DI I K + DL NPP Sbjct: 401 DDIPRWQLINKAL---------DLGFGNPP 421 >gi|229069971|ref|ZP_04203249.1| ATP-dependent RNA helicase [Bacillus cereus F65185] gi|228713171|gb|EEL65068.1| ATP-dependent RNA helicase [Bacillus cereus F65185] Length = 458 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP+++ D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKIDSESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K V L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|118575685|ref|YP_875428.1| superfamily II helicase [Cenarchaeum symbiosum A] gi|118194206|gb|ABK77124.1| superfamily II helicase [Cenarchaeum symbiosum A] Length = 434 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 220/374 (58%), Gaps = 7/374 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ V+ A+ D G+ K PIQ IP++L DV G A TGTGKT ++ + ML Sbjct: 4 FEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTGRDVVGQAHTGTGKTGAYSISMLQE 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +++G + LI+ PTRELA Q+ + +K+ K + + GG Q L+RG Sbjct: 64 IKEGGG----IQGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQSMGVQLDALKRG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A++L+ TPGR++DH RG + ++ + LV+DEAD MLDMGFI IQ I L P + L Sbjct: 120 AEILVATPGRLIDHIKRGSISIDRVTHLVLDEADTMLDMGFIDDIQFILDLTPDEKVMSL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ ++SE +L+NPK+ ++ + E I+ ++ + +K L ++ + Sbjct: 180 FSATMPIEILRLSEEYLKNPKQFLLDADDLSGEGIDQSYLVIRDR--EKMDYLVDFIK-E 236 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+FC+ K ++ L K+ + AI G++ Q R + +S F+ Q++VA+ Sbjct: 237 NGKGQTIVFCSTKYRTRDVARMLHKRNYGAVAIEGDMSQHRREQSMSRFRTAKAQILVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+D+P V V N+DVPN+ Y HRIGRT RAG G+A TLV+ + D I++ Sbjct: 297 DVAARGIDVPRVALVVNYDVPNQEMIYFHRIGRTARAGAKGRAITLVSYSSVSEFDVIKR 356 Query: 363 LIEKKVDWLNGDLS 376 I+ KV +LN ++ Sbjct: 357 QIKAKVTYLNDEMG 370 >gi|237720587|ref|ZP_04551068.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4] gi|293373374|ref|ZP_06619730.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC 3f] gi|229450338|gb|EEO56129.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4] gi|292631660|gb|EFF50282.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC 3f] Length = 644 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 226/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QVD---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L+N K I + + + ++H V Q K L++++ Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIISKK 364 >gi|90408198|ref|ZP_01216366.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3] gi|90310728|gb|EAS38845.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3] Length = 462 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F L L+ ++ + Y + T IQ +++P +L DV +TG+GKTA+F L +L Sbjct: 4 LSFDQLALNSALLHNLKSLEYTQMTEIQAQSLPHILAGKDVIAQGKTGSGKTAAFALGLL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L R R++ +LIL PTRELA QV+ + + +N+ V L GG PF Q L Sbjct: 64 QKLNVKRFRIQ---SLILCPTRELADQVSSEIRRLARGIHNIKVLTLCGGAPFGPQIGSL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI DH + L ++ + +LV+DEADRMLDMGF+ I++I P +RQ Sbjct: 121 EHGAHIIVGTPGRIQDHLRKQTLCLDEVSMLVLDEADRMLDMGFVDAIEDIIEQAPKSRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT D++Q++S N L++P I+V TI F + + AL +L Sbjct: 181 TLLFSATFPDQIQQISRNILRDPVSIKVEAMHDD-NTISQYFYLVRSAEERMLALRLLIL 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q Q T + ++FCN K+ V + L +GFS A+HG++DQ+ R + L F + ++ Sbjct: 240 QYQPT--SAVVFCNTKREVQEVAEELNNRGFSALALHGDLDQKDRDQALIRFSNRSCSIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI ++ VFN+++ + E ++HRIGRTGRAG G AF+ + +D I Sbjct: 298 VATDVAARGLDIENLSAVFNYNLAHDQEIHVHRIGRTGRAGSKGMAFSFYSAKDEHRIHL 357 Query: 360 IEKLIEKKV 368 +E L+++ + Sbjct: 358 LEDLLDRNI 366 >gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domain [Alteromonadales bacterium TW-7] gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domain [Alteromonadales bacterium TW-7] Length = 435 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 216/368 (58%), Gaps = 13/368 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGL P++ + D Y +PTPIQ K IP VL D+ A TG+GKTA+F LPML Sbjct: 10 FNELGLIPELQARLTDLEYSQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPMLQK 69 Query: 62 -ILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEA 114 LE+G + LIL PTRELA QVAD+ + Y N+N + + GG+ Sbjct: 70 LFLEQGAKKTASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNT 129 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L GAD+++ TPGR+LD + + ++ + LV+DEADRML +GF + + +L+ Sbjct: 130 QMQALRGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELAELLALM 189 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P +QT+LFSAT +++ ++++ L NP I+V + + ++ F + K + Sbjct: 190 PAKKQTMLFSATFPEQVTQLTQKLLTNPVEIQVQSKDEST-LVQRVFTVNKGE---KTTV 245 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ + + +IF N KK+ +L LEK+G + HG+ Q R +++ FK G Sbjct: 246 LAHLIK-EHKWRQALIFVNAKKDCEHLAGKLEKRGINAQVFHGDKGQSERTRVIEKFKAG 304 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I++++A+D+AARGLDI + V NF++P +Y+HRIGR+GRAG G A +L+ ED Sbjct: 305 EIEVLIATDIAARGLDIAKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDF 364 Query: 355 KHIDAIEK 362 H IEK Sbjct: 365 HHFKIIEK 372 >gi|163943135|ref|YP_001648019.1| DEAD/DEAH box helicase domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|163865332|gb|ABY46391.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis KBAB4] Length = 481 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++K+S ++ +P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFE--MKEEEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG +GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2] gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2] Length = 585 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 141/351 (40%), Positives = 214/351 (60%), Gaps = 9/351 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L +S +V+ AV + GY T IQ ++IPL+++ DV G + TGTGKTA+F +P + Sbjct: 4 FNELQISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIPAIEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 + +G R P LI+ PTREL QVA K+ K + + + GG P + Q + L+R Sbjct: 64 VCQG---TRYPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQ 179 G +++ TPGRI+DH NR L ++N ++++DEAD ML+MGF I+ I S++P Q Sbjct: 121 GCGIVVGTPGRIMDHLNRRTLKLDNTNMVILDEADEMLNMGFKEDIEEILSMMPEGNEHQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSAT E+ ++++ F +P R+E+ + T +T+E + A KK L+ LL Sbjct: 181 TILFSATWPAEILRITKEFQNDPVRVEIKSAQRTIDTVEQIYYD--APRGKKANALRVLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D +IFCN KK V LC L K ++HG++ Q R +++ F+ G ++ Sbjct: 239 SHYDP-DLCMIFCNTKKMVDELCDELNKHNIKAISLHGDMKQEFRSRVMEQFRSGNYPIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 +A+D+AARG+D+ D+ V NFD+P E YIHR+GRTGRAG+ G A TLV+ Sbjct: 298 IATDVAARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVS 348 >gi|160882942|ref|ZP_02063945.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483] gi|156111625|gb|EDO13370.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483] Length = 644 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 226/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L+N K I + + + ++H V Q K L++++ Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQIY-GIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRDI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIISKK 364 >gi|157376984|ref|YP_001475584.1| ATP-dependent RNA helicase DbpA [Shewanella sediminis HAW-EB3] gi|157319358|gb|ABV38456.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 458 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 230/386 (59%), Gaps = 14/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 1 MSFSTLTLKPELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L R R++ +L+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 61 HKLNVKRFRIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R +L + ++ LV+DEADRML+MGF+P + I + +P RQ Sbjct: 118 EHGAHIIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT ++QK++E + P ++V T + + +I+ F + ++ AL LL Sbjct: 178 TLLFSATFPKQIQKIAEEIMYEPVMVKV-TSTHDSSSIDQHFYQIDSNKDRQKALRLLLL 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++ ++FCN K+ ++ +L GFSV A+HG+++QR R L F + +M Sbjct: 237 QHRP--ESAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIM 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N++ E +IHRIGRTGRAG G AFT +D I Sbjct: 295 VATDVAARGLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGAAFTFYTYDDDYKI-- 352 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI 385 KL+E ++L+ D+ S P E + Sbjct: 353 --KLLE---EYLDHDIVSEGLPPENL 373 >gi|281415806|ref|ZP_06247548.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665] Length = 597 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 213/375 (56%), Gaps = 16/375 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FAD G+ P +V A+ G V P PIQ T+P+ L HD+ G A+TGTGKT F +P L Sbjct: 39 FADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQR 98 Query: 62 -----------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 + KG A P+ LI+ PTRELA QVA + L +A + GG Sbjct: 99 AIGPGEPGWDGLEAKGTAGA--PQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGR 156 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 +E Q ++L+RG ++++ TPGR++D + L ++ + +V+DEAD MLD+GF+P ++ + Sbjct: 157 AYEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETL 216 Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYS 229 + VP RQT+LFSATM + ++ ++ P I P T + Y A + Sbjct: 217 LAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHM 276 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K L+ + LQ++ + IIF K+ + L +GF+ A+HG++ Q +R + L Sbjct: 277 DKDELVARALQAEGRGRT-IIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALR 335 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 F+ G + ++VA+D+AARG+D+ DV HVFNF P + Y+HR+GRTGRAG G A TLV Sbjct: 336 AFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395 Query: 350 AKEDIKHIDAIEKLI 364 ED+ I+K + Sbjct: 396 DWEDMPRWSLIDKAL 410 >gi|299146922|ref|ZP_07039989.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_23] gi|298514807|gb|EFI38689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_23] Length = 644 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 226/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QVD---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L+N K I + + + ++H V Q K L++++ Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIISKK 364 >gi|53711460|ref|YP_097452.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46] gi|52214325|dbj|BAD46918.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46] Length = 636 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 226/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K + R+P++L+L PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 63 --QKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + + + +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L N K I + + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ IQ++V Sbjct: 239 YYPQIY-GIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2] gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27] gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93] gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2] gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27] gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93] Length = 643 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 66 NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 123 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL++P+ ++V + T +E + +K + +LL Sbjct: 183 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HV+N+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 360 IERVTRSSME 369 >gi|229181700|ref|ZP_04309023.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W] gi|228601733|gb|EEK59231.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W] Length = 481 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395] gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587] gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3] gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39] gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226] gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385] gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587] gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3] gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395] gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39] gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226] gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395] gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385] Length = 663 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 26 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 86 NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL++P+ ++V + T +E + +K + +LL Sbjct: 203 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 260 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 261 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HV+N+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 380 IERVTRSSME 389 >gi|302392742|ref|YP_003828562.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM 5501] gi|302204819|gb|ADL13497.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM 5501] Length = 527 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 221/369 (59%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS ++ AV D G+ + TPIQ + IP +L DV G AQTGTGKTA+F +P I Sbjct: 6 FEELNLSNEITKAVEDMGFEEATPIQTEAIPHLLAGKDVIGQAQTGTGKTAAFGIP---I 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120 LEK + + L+L PTRELA QV++ + K Y + L GG + Q K L+ Sbjct: 63 LEKIDPDDKSVQALVLCPTRELAIQVSEEIGRLAK-YKRKIKTLPVYGGQSIKRQIKALK 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G ++I TPGR +DH RG L +N++++++DEAD ML+MGF I+ I V RQT Sbjct: 122 KGVQIVIGTPGRTMDHMRRGTLKFDNLKMVILDEADEMLNMGFRDDIETILEGVKGKRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 + FSATM + K+ + + +P+ ++V T IE + K +L +L+ Sbjct: 182 IFFSATMPQSILKLRKKYQTDPEIVKVVHKKLTVPNIEQGYFEV--NRRNKLEVLSRLID 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K I+FCN +K V L L+ +G+ V IHG ++Q R ++++ FK GTI+ +V Sbjct: 240 IYNP-KLSIVFCNTRKQVDELTIQLQARGYFVDGIHGGLNQPQRDRVMNKFKNGTIETLV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGR GR G AFT V ++I + I Sbjct: 299 ATDVAARGIDVDDVEAVFNYDIPQDIEYYVHRIGRTGRVGRQGYAFTFVVGKEIYQLKKI 358 Query: 361 EKLIEKKVD 369 EK + K++ Sbjct: 359 EKYAKTKIE 367 >gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 689 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 220/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L L+ ++ A+ G+V PTPIQ IPL+L+ D G AQTGTGKTA+F LP+L Sbjct: 34 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 93 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + + + P+ +I+ PTRELA QVA + G++ L V + GG Q + L Sbjct: 94 NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRAL 150 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA +++ TPGR+ D R +L ++ V+DEAD ML MGF+ + I P + Q Sbjct: 151 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 210 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++ + + +L+NP +++V + T + + + +K + +LL Sbjct: 211 RVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKG--VEKDEAMSRLL 268 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 269 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 327 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 328 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 387 Query: 360 IEKLIEKKVD 369 IE++ + +++ Sbjct: 388 IERVTKSQME 397 >gi|330961645|gb|EGH61905.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 442 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 219/371 (59%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|51245828|ref|YP_065712.1| ATP-dependent RNA helicase DbpA [Desulfotalea psychrophila LSv54] gi|50876865|emb|CAG36705.1| probable ATP-independent RNA helicase (DbpA) [Desulfotalea psychrophila LSv54] Length = 469 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 150/379 (39%), Positives = 228/379 (60%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS + + GY + TPIQ +++P VL+ D+ A+TG+GKTA+F + +L Sbjct: 4 FTTLALSKAMTDNLEIMGYHEMTPIQAESLPHVLEGEDLLAQAKTGSGKTAAFGIGLLHN 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ RV+ TL++ PTRELA QVA + + +N+ + L GG+P + Q LE Sbjct: 64 LDVSLFRVQ---TLVMCPTRELAEQVAGELRRIARFKHNIKITTLCGGMPIKPQLASLEH 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 A +++ TPGRI H R L ++++ LV+DEADRMLD+GF + I S +P RQTL Sbjct: 121 QAHIVVGTPGRIEQHLKRESLNLDHVTTLVLDEADRMLDIGFADTLDAIISYLPRRRQTL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT DE+ ++SE F +R+ V+ + F ++ KK A++ ++L + Sbjct: 181 LFSATFPDEILRLSEQFQYKAQRVIVDVEHEENSIQQEFF---ECKWDKKAAIVSRILAT 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ +IFCN K N ++ +LE +GFS AIHG++DQR R ++L F G+ +MVA Sbjct: 238 HKP-ESTLIFCNTKANCRDIAEALEAKGFSALAIHGDLDQRERTEVLVRFSNGSSPIMVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N D+P +E YIHRIGRTGRAG+ G AF+L+ + ++ I Sbjct: 297 TDVAARGLDINGLSAVINVDLPFESEVYIHRIGRTGRAGKEGLAFSLMEPGEEFRLEEIN 356 Query: 362 KLIEKKVDWLNGDLSSLNP 380 +L+ D+ D+ +L P Sbjct: 357 RLM--GTDFKISDVEALAP 373 >gi|315125230|ref|YP_004067233.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913] gi|315013743|gb|ADT67081.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913] Length = 420 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 144/397 (36%), Positives = 235/397 (59%), Gaps = 10/397 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F+D ++P+VV + ++G+ TPIQ K +P + + D+ G AQTGTGKT +F+ Sbjct: 6 FSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLTATCHR 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ +A + PR LI+ PTRELA Q+ + + + NL + L+ GG +E Q +LE+ Sbjct: 66 LLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179 G D+LI T GR++D + +G +N IE++V+DEADRM D+GFI I+ + +P T R Sbjct: 126 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFRRMPDTSERL 185 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +Q+++ + NP+ +++ T + I+ + K LL L+ Sbjct: 186 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELF--HPSQEDKIKLLLTLI 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ + I+F N K + + L+ G V + G+++Q+ R IL+ F +G + + Sbjct: 244 E-EEWPEKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELDFL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGL IP+V HVFNFD+P+ E+Y+HRIGRT RAG G A + ++ ++ Sbjct: 303 VATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNLHE 362 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396 IE+ IE + + D S+L L K I H ++N Sbjct: 363 IEEYIEHSIPLSHYDKSALLDDLTKPTI----HRKRN 395 >gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426] gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426] Length = 651 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 16 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 75 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 76 NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 132 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 133 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 192 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL++P+ ++V + T +E + +K + +LL Sbjct: 193 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 250 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 251 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 309 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HV+N+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 310 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 369 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 370 IERVTRSSME 379 >gi|60679730|ref|YP_209874.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC 9343] gi|253564478|ref|ZP_04841935.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5] gi|265764859|ref|ZP_06093134.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16] gi|60491164|emb|CAH05912.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC 9343] gi|251948254|gb|EES88536.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5] gi|263254243|gb|EEZ25677.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16] gi|301161192|emb|CBW20730.1| putative RNA helicase dead-box protein [Bacteroides fragilis 638R] Length = 647 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 226/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 15 FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 73 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K + R+P++L+L PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 74 --QKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 131 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + + + +V+DEAD ML+MGF I I + VP R T Sbjct: 132 RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADVPQERNT 191 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L N K I + + + ++H +A+ K A L++++ Sbjct: 192 LLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAK--DKYAALKRIVD 249 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ IQ++V Sbjct: 250 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQILV 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 309 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 368 Query: 361 EKLIEKK 367 E++I KK Sbjct: 369 ERIIGKK 375 >gi|228952820|ref|ZP_04114890.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806863|gb|EEM53412.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 458 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP+++ D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKIDSESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K V L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str. Eklund 17B] gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str. Eklund 17B] Length = 526 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 147/368 (39%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL VV A+ D G+ P+ IQ ++IP+ L+ D+ G AQTGTGKTA++ P+L+ Sbjct: 6 FYSLGLKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILSR 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121 L + LIL PTRELA QV D +K K V + GG + Q + L R Sbjct: 66 LNDTNG----IKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRRD 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+LD NR L +N ++ LV+DEAD ML+MGFI I+ I S P RQTL Sbjct: 122 NIDIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIEDIETIISNTPAERQTL 181 Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM + K+++N+++ + K + + S T IE + ++ + L +LL Sbjct: 182 LFSATMPAPIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKH--RLEALCRLLD 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + IIFC KK V L L+ +G+ V +HG++ Q R+ L FKEG++ L++ Sbjct: 240 -LDNPSSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+D+P E+Y+HRIGRTGRA R G A++LV+ +++ + I Sbjct: 299 ATDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQI 358 Query: 361 EKLIEKKV 368 +++ + + Sbjct: 359 QRVTKSTI 366 >gi|186476125|ref|YP_001857595.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia phymatum STM815] gi|184192584|gb|ACC70549.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum STM815] Length = 556 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 145/389 (37%), Positives = 223/389 (57%), Gaps = 33/389 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS ++V A+ AGY PTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 37 FAELGLSAEIVSALTAAGYKSPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 96 Query: 63 LEK------------------GRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYN 100 + GR R V P L+L PTRELA QV YGK+ Sbjct: 97 FAQLQKVQASQPREPRDNNAGGRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLR 156 Query: 101 -LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159 L ++GG+ + Q L + ++L+ TPGR++DH RG++ ++ +++LV+DEADRML Sbjct: 157 RLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVLDEADRML 216 Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV----NTPSSTAE 215 DMGFI I I + P +RQT+LFSAT+ ++ ++ L+ P+RIE+ ++ A+ Sbjct: 217 DMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTGRLLKEPERIEIKQHIEQRTNIAQ 276 Query: 216 TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275 T+ + K LL LL+ + I+F K + L L GF A+ Sbjct: 277 TVHYV-----DDRDHKDRLLDHLLRDSG-LDQAIVFTATKSDADMLAGRLADAGFESAAL 330 Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335 HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIGR Sbjct: 331 HGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGR 390 Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 TGRAGR G A +LV + + IE+ + Sbjct: 391 TGRAGRSGTAVSLVHHAEQGALKRIERFV 419 >gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21] gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80] gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)] gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)] gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80] gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21] Length = 653 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 16 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 75 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 76 NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 132 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 133 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 192 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL++P+ ++V + T +E + +K + +LL Sbjct: 193 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 250 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 251 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 309 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HV+N+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 310 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 369 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 370 IERVTRSSME 379 >gi|162447297|ref|YP_001620429.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A] gi|161985404|gb|ABX81053.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A] Length = 547 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 143/349 (40%), Positives = 214/349 (61%), Gaps = 7/349 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL + A+ G+ + TPIQ + IP ++ D+ G AQTGTGKT +F +PM+ Sbjct: 5 FNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMV-- 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 EK +R + LIL PTREL QV K K Y L V ++GG +E Q K+L+R Sbjct: 63 -EKTDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELDR 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGRI+DH +RG + +++I L +DEAD ML MGF I+ I P TRQT+ Sbjct: 122 KPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTV 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++K+++N+ +NP+ I++ S T + I + + +K +LL++LL Sbjct: 182 LFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYF--LVKEKEKQSLLERLLDF 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ IIF N K + SL+K GF+ A+HG++ Q R +++ F+ + ++VA Sbjct: 240 ENP-STAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 +D+AARGLD+ DV + N+D+P + E Y+HRIGRTGRAG+ GKAFT V Sbjct: 299 TDVAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVT 347 >gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107] gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107] Length = 607 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 217/371 (58%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G S ++ + + GY P+PIQ P ++ D+ G AQTGTGKTA+F LP+L Sbjct: 59 FDGFGFSEALLKTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE GR + P+ L+L PTRELA QVAD+F+ Y + +L V + GG F +Q L R Sbjct: 119 LESGR---KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRR 175 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR++DH +G L + + LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 176 GVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVV 235 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S+ +L +P + + T + I A S K LQ++L + Sbjct: 236 LFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQR--AITVPMSHKLEALQRVLDA 293 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIF K + + +LE G V ++G++ Q R + + + G++ ++VA Sbjct: 294 CGG-EGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 352 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A + + + I +E Sbjct: 353 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 412 Query: 362 KLIEKKVDWLN 372 + + ++ + Sbjct: 413 RATGQPIELME 423 >gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222] gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222] Length = 665 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 220/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L L+ ++ A+ G+V PTPIQ IPL+L+ D G AQTGTGKTA+F LP+L Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + + + P+ +I+ PTRELA QVA + G++ L V + GG Q + L Sbjct: 66 NKINLNQHK---PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA +++ TPGR+ D R +L ++ V+DEAD ML MGF+ + I P + Q Sbjct: 123 SRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++ + + +L+NP +++V + T + + + +K + +LL Sbjct: 183 RVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKG--VEKDEAMSRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 241 ETEET-DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 359 Query: 360 IEKLIEKKVD 369 IE++ + +++ Sbjct: 360 IERVTKSQME 369 >gi|310829374|ref|YP_003961731.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612] gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612] Length = 547 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 143/354 (40%), Positives = 220/354 (62%), Gaps = 7/354 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L ++ +++ A+ D G+V T IQ + IP +++ D+ G +QTGTGKT +F +P + Sbjct: 1 MKFRELEINEQLLRAIDDMGFVDMTEIQERAIPRLMEGGDLIGKSQTGTGKTMAFAIPAI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 EK +R P+ L+L PTRELA QV++ F K K ++++ V + GG E Q + L Sbjct: 61 ---EKIDPELRKPQVLVLLPTRELALQVSEEFRKVLKYSHSIKVVAVFGGASIENQIRDL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR++DH R L N + + V+DEAD ML+MGF I+ I V Q Sbjct: 118 KSGAQIVVGTPGRVMDHMRRKTLKFNALTMAVLDEADEMLNMGFREDIELILDAVDHDVQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + K++E + +NP IE++ + A +IE + Q K L +LL Sbjct: 178 TVLFSATMPKPILKIAETYQKNPTMIEISPKTMVAPSIEQKYFNISDQ--NKFEALTRLL 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ +IFCN K V + +L++ G+SV IHG++ Q SR+ +L F +G ++++ Sbjct: 236 DVYKPQRS-LIFCNTKHYVDEITENLQELGYSVDKIHGDMRQVSRLNVLKRFSQGRLKIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARG+D+ DV VFN+DVP+ E Y+HRIGRTGRAG+ G + TL D Sbjct: 295 VATDVAARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARSRD 348 >gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51] gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51] Length = 576 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 221/370 (59%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L+ ++ A+ + G+V PTPIQ IP++L+ D G AQTGTGKTA+F LP+L Sbjct: 26 IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + P+ +++ PTRELA QVA + G+N L V + GG Q + L Sbjct: 86 NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGR+ D R +L ++ ++DEAD ML MGF+ + I P + Q Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSATM ++++ E FL++P+ ++V + T +E + +K + +LL Sbjct: 203 RVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKG--VEKDEAMARLL 260 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++T I+F +++ L L +GF A+HG+I Q R + + + K+G I ++ Sbjct: 261 ETEET-DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD+P + HV+N+D+P E+YIHRIGRTGRAGR GKA LV I+ + Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379 Query: 360 IEKLIEKKVD 369 IE++ ++ Sbjct: 380 IERVTRSSME 389 >gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902] gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902] Length = 624 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 217/371 (58%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G S ++ + D GY P+PIQ P ++ D+ G AQTGTGKTA+F LP+L Sbjct: 73 FDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 132 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 LE G+ + P+ L+L PTRELA QVAD+F+ Y + +L V + GG F +Q L R Sbjct: 133 LESGQ---KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRR 189 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR++DH +G L + + LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 190 GVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVV 249 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S+ +L +P + + T + I A S K LQ++L + Sbjct: 250 LFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQR--AITVPMSHKLEALQRVLDA 307 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIF K + + +LE G V ++G++ Q R + + + G++ ++VA Sbjct: 308 CGG-EGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVA 366 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A + + + I +E Sbjct: 367 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 426 Query: 362 KLIEKKVDWLN 372 + + ++ + Sbjct: 427 RATGQPIEMME 437 >gi|218897409|ref|YP_002445820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9842] gi|228901054|ref|ZP_04065263.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222] gi|228965436|ref|ZP_04126523.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto str. T04001] gi|218541264|gb|ACK93658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9842] gi|228794267|gb|EEM41784.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto str. T04001] gi|228858570|gb|EEN03021.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222] Length = 450 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 144/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKINPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus subsp. fetus 82-40] gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus subsp. fetus 82-40] Length = 624 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 149/370 (40%), Positives = 216/370 (58%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+D LS ++ A+ + Y PT IQ IP ++Q D+ A+TGTGKTA+F LP+L Sbjct: 1 MLFSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMPRT--LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + P+T L+L PTRELA QV N + Y K + GG+ Q + Sbjct: 61 EKLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+++ TPGR+LD + L + +I+ LV DEADRM DMGFI I+ I ++P R Sbjct: 121 LKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT E+ + + L++P RI++ +STA I + KK LL ++ Sbjct: 181 QNLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVI--LVDRDKKMELLNEV 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ ++F K++ L GFSV A+HG+ Q R K L FK G ++ Sbjct: 239 F-GVESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI ++ V N ++PN E+Y+HRIGRTGRAG G A +LV ++ K + Sbjct: 298 LVATDIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLI 357 Query: 359 AIEKLIEKKV 368 IEKLI+KK+ Sbjct: 358 DIEKLIDKKL 367 >gi|228961717|ref|ZP_04123322.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797966|gb|EEM44974.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pakistani str. T13001] Length = 481 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 221/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFFYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|319775896|ref|YP_004138384.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047] gi|317450487|emb|CBY86704.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047] Length = 613 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 228/369 (61%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL ++ AV D G+ P+PIQ IP +L +DV G+AQTG+GKTA+F LP+L Sbjct: 7 FNNLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLAQ 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT-VALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTRELA QVAD E + K T + L GG ++ Q + L++ Sbjct: 67 IDPSE---KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRILDH RG L ++ + +V+DEAD ML MGFI ++ + + +P QT Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLLQ 240 LFSATM + ++++++ F+ +P+ +++ + A I+ C+ Y +K L + L+ Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCW---YVHGVRKNEALLRFLE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIF K +++ LEK GF A++G++ Q+ R + L + ++ ++V Sbjct: 241 VED-FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N+D+P AE+Y+HRIGRTGRAGR G+A V + + + I Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359 Query: 361 EKLIEKKVD 369 E L++K ++ Sbjct: 360 EHLMKKGIN 368 >gi|229099881|ref|ZP_04230804.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29] gi|228683496|gb|EEL37451.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29] Length = 481 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 223/363 (61%), Gaps = 6/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++ LS +++ A+ GY PT +Q + IP+ L++ D+ +QTG+GKTASF +P+ Sbjct: 5 EFSNYALSKEIIRALTGLGYEHPTEVQGEVIPVALKKKDLVVKSQTGSGKTASFGIPLCE 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 65 MVEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQ 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+ Sbjct: 122 KTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++++K+S ++ +P IE+ T + IEH T + +K +LL+ + Sbjct: 182 LFSATLPEDVEKLSRTYMDSPTHIEIKAAGITTDKIEHTLFETREE--EKLSLLKDVTTI 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + IIFC ++NV ++ L + + IHG + Q R +++ +F++G + +VA Sbjct: 240 ENP-DSCIIFCRTQENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEIE 358 Query: 362 KLI 364 I Sbjct: 359 AYI 361 >gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group] Length = 1382 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 222/369 (60%), Gaps = 8/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G P+++ + AG++ PTPIQ +T P+ LQ D+ IA+TG+GKT +++P Sbjct: 603 MTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAF 662 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + + P L+L PTRELA+Q+ D K+G++ ++ L GG Q ++L Sbjct: 663 IHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLREL 722 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD+++ TPGR+ D K+ ++ + LV+DEADRMLDMGF P I+ I +P RQ Sbjct: 723 ERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQ 782 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK---KCALLQ 236 TL+++AT E+ K++ + L++P ++ + S E + + + Y + K L+ Sbjct: 783 TLMYTATWPKEVTKIAGDLLKDPVQVNIG---SIDELVANKSITQYVEVVPPLDKQRRLE 839 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q+L++Q+ IIFC+ KK L + + F +IHG+ Q R +L+ F+ G Sbjct: 840 QILRAQERGSKVIIFCSTKKMCDQLARDIGRS-FGAASIHGDKSQAERDNVLNQFRTGRA 898 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G ++T +++D K+ Sbjct: 899 PILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKY 958 Query: 357 IDAIEKLIE 365 + K++E Sbjct: 959 AGDLVKVLE 967 >gi|146294198|ref|YP_001184622.1| ATP-dependent RNA helicase DbpA [Shewanella putrefaciens CN-32] gi|145565888|gb|ABP76823.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 458 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 1 MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 61 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P + I P RQ Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++Q +++ + +P ++V + +H F ++ AL QLL Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQH-FYHLDDDKARMQAL--QLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN K+ + LE GFSV A+HG+++QR R + L F + ++ Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + VFN+ V E +IHRIGRTGRAG G A+T +D I Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354 Query: 360 IEKLIEKKV 368 +E+ +E+++ Sbjct: 355 LEEYLEREI 363 >gi|120597664|ref|YP_962238.1| ATP-dependent RNA helicase DbpA [Shewanella sp. W3-18-1] gi|120557757|gb|ABM23684.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] Length = 458 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 1 MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 61 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P + I P RQ Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++Q +++ + +P ++V + +H F ++ AL QLL Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQH-FYHLDDDKARMQAL--QLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN K+ + LE GFSV A+HG+++QR R + L F + ++ Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + VFN+ V E +IHRIGRTGRAG G A+T +D I Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354 Query: 360 IEKLIEKKV 368 +E+ +E+++ Sbjct: 355 LEEYLEREI 363 >gi|237716826|ref|ZP_04547307.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405596|ref|ZP_06082146.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644524|ref|ZP_06722278.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC 2a] gi|294805785|ref|ZP_06764662.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens SD CC 1b] gi|229442809|gb|EEO48600.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356471|gb|EEZ05561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640077|gb|EFF58341.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC 2a] gi|294447006|gb|EFG15596.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens SD CC 1b] Length = 643 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L+N K I + + + ++H V Q K L++++ Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 E++I KK ++ G++ + Sbjct: 358 ERIIGKK--FITGEMPT 372 >gi|93006300|ref|YP_580737.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5] gi|92393978|gb|ABE75253.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5] Length = 384 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 231/375 (61%), Gaps = 15/375 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LS + AV D G+ + TPIQ K +P L D G AQTGTGKTA+F+L ++ Sbjct: 7 FTDLPLSAATLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTIMEA 66 Query: 63 LEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L K + PR +++ PTRELA Q+ D+ K +L ++GG +E Q Sbjct: 67 LLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALTKYTSLHSVCIMGGTNYETQQ 126 Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +LER D+LI TPGR++D ++G + ++ +E+LV+DEADRMLDMGFIP I+ + +P Sbjct: 127 HELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVGRMP 186 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKC 232 RQ+LLFSAT ++ ++ +L P+ +E+ T+E + +H ++ T Q K Sbjct: 187 PNTDRQSLLFSATFNQDVMGLAYRWLHEPEFVEIEPEHKTSELVDQHFYLLTEDQ---KL 243 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 +++++ + T++ IIF N+K V L H L +QG + + G++ Q+ R K L FK Sbjct: 244 EAVERII-TDSTVEKVIIFANRKDQVKRLYHKL-RQGHKIVMLSGDVIQQKREKYLQRFK 301 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 +G ++VA+D+A RG+ + DV HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++ Sbjct: 302 DGHASVLVATDVAGRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGQTGISISFVSED 361 Query: 353 DIKHIDAIEKLIEKK 367 D +I A+EK ++ K Sbjct: 362 DAFNIPALEKHLDTK 376 >gi|282859050|ref|ZP_06268186.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia JCVIHMP010] gi|282588218|gb|EFB93387.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia JCVIHMP010] Length = 625 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 231/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+ ++ A+ + G+ P P+Q + IP +L R+DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVCEEIRKAIEEQGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + ++L PTREL Q+AD+ + +GK +L +A + GG E Q K+L+ Sbjct: 64 RID---TTTKETQAIVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGTSIETQIKELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D +RGK + N+ +V+DEAD ML+MGF I I S VP R T Sbjct: 121 RGVQIIVATPGRLIDLMHRGKAKLENVRNMVLDEADEMLNMGFQESITEILSGVPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+++V++ +L + K I V + + AE + H + A+ K L++L+ Sbjct: 181 LLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNAK--DKYLALKRLVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K + L K G++ A+HG++ Q+ R + F+ Q++V Sbjct: 239 FYPKI-YAIIFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ ++ HV N+ +P+ ENY HR GRTGRAG+ G + +++ + + I Sbjct: 298 ATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 E++I K ++++G L S Sbjct: 358 ERVISK--EFIDGTLPS 372 >gi|257064977|ref|YP_003144649.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM 20476] gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM 20476] Length = 657 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 145/366 (39%), Positives = 215/366 (58%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + GLS + AV D GY +PTPIQ + IP+VL+ D+ A+TGTGKTA+F LP + Sbjct: 9 FDESGLSATALAAVYDLGYEEPTPIQQQAIPVVLEGRDLIAAAKTGTGKTAAFALPTMDK 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + P +I+ PTRELA Q+++ E K N V L+GG+ + Q KKL G Sbjct: 69 LPYA-GKGEGPVMVIVTPTRELAMQISEVCETIAKRTNHRVVTLLGGVSYTPQIKKLRSG 127 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D++I TPGR+LD + + ++ +++LV+DEADRMLDMGF P + I P RQTLL Sbjct: 128 CDIIIATPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATPSERQTLL 187 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ KV + L +P+ IE++ TA+ ++ + T + +K ALL ++ + Sbjct: 188 FSATIDRSQDKVMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRR--EKPALLNAFIREK 245 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K N L K G AIH + Q R + L F+EG ++VA+ Sbjct: 246 GGFRV-IVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHVIVAT 304 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+ ARG+D+P+V +V N+D+P E+Y+HRIGRTGRAG G A + V + + +I+K Sbjct: 305 DVLARGIDVPEVDYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDTKNLLRSIQK 364 Query: 363 LIEKKV 368 I + + Sbjct: 365 FIGEDI 370 >gi|119477463|ref|ZP_01617654.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143] gi|119449389|gb|EAW30628.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143] Length = 457 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 151/388 (38%), Positives = 223/388 (57%), Gaps = 17/388 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L +++ + D G+ +PIQ T+P +Q HD G AQTGTGKTA+F++ ++ Sbjct: 77 FHDLSLDDRLMHGIADLGFEYCSPIQAGTLPQTMQGHDAIGKAQTGTGKTAAFLITIIND 136 Query: 63 LE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 K PR LI+ PTREL Q+ ++ + K L VA LIGG+ ++ Q ++ Sbjct: 137 FLANPIKEERYAGEPRALIIAPTRELVVQIGEDAKSLNKYTGLKVATLIGGMDYQKQLQQ 196 Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 L R D+++ TPGR+LD +RG L ++ IEILVIDEADRMLDMGFIP ++ I P Sbjct: 197 LSRELVDIVVATPGRLLDFQSRGDLYLDQIEILVIDEADRMLDMGFIPQVRRIVRSTPRK 256 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +RQTLLFSAT T E+ ++E + P +E+ S +T++ A +K ALL Sbjct: 257 ESRQTLLFSATFTPEVLSLTEQWTFEPFSLEIEPDSVATDTVDQKVYIVAA--DQKFALL 314 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + ++Q D K+ I+F N++ L L K G + G I Q R + L FK+G Sbjct: 315 RNIVQLPDA-KSIIVFANRRDQTRKLYERLRKAGIRCGILSGEIPQNKRSQTLQRFKDGD 373 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+A RG+ + V HV N+ +P E+Y+HRIGRTGRAG G + + ++D Sbjct: 374 LQVLVATDVAGRGIHVDGVSHVINYTLPEDPEDYVHRIGRTGRAGATGTSISFACEDDSF 433 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLE 383 + +E+L+ K LS PP E Sbjct: 434 LLAPLEELLGSK-------LSCTQPPEE 454 >gi|300113218|ref|YP_003759793.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus watsonii C-113] gi|299539155|gb|ADJ27472.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii C-113] Length = 500 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 141/363 (38%), Positives = 214/363 (58%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +S ++ A+ GY PT IQ + IP +L HD+ G AQTGTGKTA+F +P L Sbjct: 8 LSFDSFAISAPILQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTL 67 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 LE R R P+ L+L PTRELA QVA+ F+ Y ++ + V + GG Q ++L Sbjct: 68 ERLELSR---REPQALVLVPTRELAIQVAEAFQSYARHLEDFHVLPIYGGQSMGNQLRQL 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RGA V++ TPGRI+DH R L++ + +++DEAD ML MGFI ++ I VP RQ Sbjct: 125 KRGAHVIVGTPGRIMDHLRRKSLILTTLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM ++ ++ L P+ I++ +++ I + + K L ++L Sbjct: 185 VALFSATMPTSVRNIASRHLHAPQDIKIKGKTASLPAINQRYWLVSGLH--KLDALTRML 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++ IIF K L L +G++ A++G++ Q SR K++ K+ TI ++ Sbjct: 243 EAEE-YDATIIFVRTKIATEELAKKLTARGYAAAALNGDMPQSSREKVVDQLKKNTIDII 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ +GHV N+D+P YIHRIGRTGRAGR G A VA + + + A Sbjct: 302 VATDVAARGLDVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLSA 361 Query: 360 IEK 362 I++ Sbjct: 362 IKR 364 >gi|113969089|ref|YP_732882.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-4] gi|113883773|gb|ABI37825.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 458 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 220/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 1 MAFSTLKLKPELLENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 61 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH R +L ++N+ +LV+DEADRML+MGF P + I P RQ Sbjct: 118 EHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++Q +++ + +P ++V + TIE F ++ AL QLL Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPVMVKVAV-THEKSTIEQHFYHLDDDKARMQAL--QLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ ++FCN K+ + L GFSV A+HG+++QR R + L F + ++ Sbjct: 235 LLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + VFN+ V E +IHRIGRTGRAG G AFT +D I Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFNDQDGYKIAL 354 Query: 360 IEKLIEKKV 368 +E+ +E+ + Sbjct: 355 LEEYLERDI 363 >gi|332827587|gb|EGK00333.1| hypothetical protein HMPREF9455_03472 [Dysgonomonas gadei ATCC BAA-286] Length = 611 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 224/369 (60%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ + A+ + GY P P+Q + IP +L + D+ +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETSDIIALAQTGTGKTAAFGLPVLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +E + +P+ LIL PTREL Q+A + Y K NL V + GG E+Q K L+ Sbjct: 64 KIE---VKENVPQALILCPTRELCLQIAGDLADYSKYIDNLRVLPVYGGSSIESQIKSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D NR + + NI+ +V+DEAD ML+MGF I I S VP R Sbjct: 121 RGVQIIVATPGRLIDLINRKTVDLKNIKYVVLDEADEMLNMGFTESIDEILSKVPDERVM 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+ K+++ ++Q+PK I + + + ++H + +A+ K L+++ Sbjct: 181 LLFSATMPKEIAKITKKYMQSPKEITIGRKNEGSNNVKHVYYMVHAK--DKYLALKRIAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC ++ + L + G++ ++HG++ Q R ++ F+ IQL+V Sbjct: 239 YYPNI-YGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIHNIQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+ +P+ E+Y HR GRTGRAG+ G + ++V ++ I I Sbjct: 298 ATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSISIVHVKEKGKIREI 357 Query: 361 EKLIEKKVD 369 EK+I KK + Sbjct: 358 EKIINKKFE 366 >gi|330999043|ref|ZP_08322768.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT 11859] gi|329575785|gb|EGG57311.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT 11859] Length = 586 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 223/377 (59%), Gaps = 15/377 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS K+V ++ G+ +PTPIQ K IP++L+ DV G A TGTGKTA+F LP++ Sbjct: 6 FLELGLSEKLVNSLSSLGFEEPTPIQTKAIPVLLEGRDVLGQAATGTGKTAAFSLPLIQR 65 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 E G+ P+ LIL PTREL QV++ + ++ + V + GG + Q K Sbjct: 66 YCLDTEPGK-----PQVLILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L RG +++ TPGR LDH RG L + I+ +V+DEAD MLDMGF ++ I + +P R Sbjct: 121 LSRGVQIVVATPGRALDHIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALL 235 QT LFSAT+ ++ K++EN L + I + P ++ A + K A L Sbjct: 181 QTALFSATLPPKIAKIAENHLHDAFHILIPKEKVPEGEQPKVKQS--AYIVGRNHKTAAL 238 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++L + + + I+F + V L SL +G+SV +HG +DQ R +++ + Sbjct: 239 GRILDIE-SPRLAIVFARTRNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQ 297 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARG+DI + HV NF +P+ AE Y+HRIGRTGRAGR G A T++ + + Sbjct: 298 VDVIVATDVAARGIDIDHLTHVINFGIPSSAETYVHRIGRTGRAGREGTAITILEPRESR 357 Query: 356 HIDAIEKLIEKKVDWLN 372 + IE+L ++K+ L+ Sbjct: 358 LLKNIERLTKRKITLLS 374 >gi|229173149|ref|ZP_04300699.1| ATP-dependent RNA helicase [Bacillus cereus MM3] gi|228610326|gb|EEK67598.1| ATP-dependent RNA helicase [Bacillus cereus MM3] Length = 446 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 223/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKIDPKSSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|109898646|ref|YP_661901.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c] gi|109700927|gb|ABG40847.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica T6c] Length = 426 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 224/370 (60%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+ L L+P++ A+ GY K TPIQ + I + + DV AQTGTGKTA+F +P+L Sbjct: 1 MNFSSLDLAPELQQAIDACGYKKMTPIQQQAIVVARRGRDVLASAQTGTGKTAAFAVPIL 60 Query: 61 T-ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L K + PR LIL PTRELA Q+A N Y K +++V L GG+ Q K Sbjct: 61 QQMLNKPKKTTPGTPRALILTPTRELAEQLATNIANYAKFTDISVTALYGGVKLGGQASK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G D++I TPGR+L+H + + N+E +V+DEADRMLDMGFI ++ + + + Sbjct: 121 LSAGVDIVISTPGRLLEHMTLKNVELANVEFVVLDEADRMLDMGFIADVRQMLAQITSAH 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT++ + +++ L+N + I +S A+T++H + K L + L Sbjct: 181 QTLLFSATISPTVNELAHKLLKNHQEIRATQLNSAADTVQHVMYPVSEE--DKIRLFKTL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L Q+ + ++F + K+ L +L+ H + Q +R + +++FK +Q+ Sbjct: 239 LAEQNWYQV-LVFTSTKEQADKLMAALKTSKIDAAVCHADKSQGARRRAIADFKSAKLQV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+++AARGLDI + +V N+++P E+Y+HRIGRTGRAG+ G A + V++E+ + ++ Sbjct: 298 LIATEVAARGLDIQGLDYVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVE 357 Query: 359 AIEKLIEKKV 368 IE+LI K+ Sbjct: 358 RIERLINGKI 367 >gi|229190613|ref|ZP_04317610.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876] gi|228592958|gb|EEK50780.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876] Length = 458 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFIM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1] gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1] Length = 447 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 Query: 361 EKLI 364 EK + Sbjct: 357 EKTL 360 >gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri DSM 18205] gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri DSM 18205] Length = 568 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 147/377 (38%), Positives = 233/377 (61%), Gaps = 12/377 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFDELDLNDNVLDALYDMRFDTCTPVQEKCIPEILEGHDVLGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 + L+ G +I+ PTRELA Q+ + +G Y L +VA+ G G ++ Sbjct: 61 SKLDDGGYPKDAINCVIMSPTRELAQQIDQAMQGFG--YYLQGVSSVAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + + L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I+ I S + Sbjct: 119 ELRSLRMGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIKTIASKL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P T QT++FSATM ++++++++ L+NP I++ S AE I+ Y ++K + Sbjct: 179 PKTCQTIMFSATMPEKIEELAKTLLKNPVEIKLAV-SKPAEKIKQEAYVCYE--TQKMTI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ + ++ D +K I+F K V L SL++ G + A+H +++Q R ++ FK G Sbjct: 236 IKDIFKAGD-LKRVIVFSGSKFKVKQLAASLQQIGVNCGAMHSDLEQAERDDVMFKFKSG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++VA+D+ ARG+DI D+ V N+DVP+ E+Y+HRIGRT RA R G+A T V++ED Sbjct: 295 QYDVLVATDIVARGIDIDDIEMVINYDVPHDTEDYVHRIGRTARANRDGRAITFVSEEDQ 354 Query: 355 KHIDAIEKLIEKKVDWL 371 IEK +EK VD + Sbjct: 355 YWFQQIEKFLEKVVDKM 371 >gi|255530101|ref|YP_003090473.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343085|gb|ACU02411.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM 2366] Length = 418 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/427 (36%), Positives = 240/427 (56%), Gaps = 15/427 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF D +P+++ +L G+ TPIQ + IPL+L + D+ AQTGTGKT +++LP++ Sbjct: 1 MDFKDFNFNPELLEGLLAMGFRNATPIQQQAIPLILNKKDLIACAQTGTGKTGAYLLPIM 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 ++ + R TLIL PTRELA Q+ E N++ + GG I +E Q + Sbjct: 61 NMIVETENRHN--NTLILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQKR 118 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + G D++I TPGR++ H + G L ++ ++ LV+DEADRMLDMGF I I S +P Sbjct: 119 SMREGVDLIIATPGRLISHLSSGVLKLDQLQHLVLDEADRMLDMGFYDDIMRIVSYLPQV 178 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM +++K++ L++P++I + ++ + + +K LL Sbjct: 179 RQTVMFSATMPPKIRKLAATLLKHPEQINIALSKPAEGILQQIY---FVHDEQKVPLLTD 235 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L++ + K+ IIF + K+ V NL G A H ++ Q R IL FK + Sbjct: 236 VLKTGE-YKSIIIFASTKEKVKNLGKVFRTLGLKAEAFHSDLGQSERESILLKFKNKQLP 294 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++ +D+ +RG+D+ + V NFDVP+ AE+Y+HRIGRT RA G A TLV D + + Sbjct: 295 ILIGTDVLSRGIDVEGIDLVVNFDVPHDAEDYVHRIGRTARAATKGTAITLVNSRDKRKL 354 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 +IEKLIEK++D + L L I A K P QKS G + K+ + ++K Sbjct: 355 VSIEKLIEKEIDRI-----PLPEHLVAIPEATTERHAKPKPAAQKS-GSGKPKRKFWNKK 408 Query: 418 SHIPLKE 424 KE Sbjct: 409 PKASSKE 415 >gi|228924198|ref|ZP_04087469.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835416|gb|EEM80786.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 481 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLAPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella bacilliformis KC583] gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain protein [Bartonella bacilliformis KC583] Length = 471 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 152/373 (40%), Positives = 225/373 (60%), Gaps = 6/373 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LGLS ++ +L+AG +P PIQ + IP++L+ D+ GIAQTG+GKT +F LP+L+ Sbjct: 19 FTKLGLSTLLIKNLLNAGISEPKPIQEQAIPVMLKGRDILGIAQTGSGKTLAFGLPILSQ 78 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G R + R LIL PTRELA Q+ + K +L+ L++GG+ Q K++ Sbjct: 79 ILTFGDKRSPKTARALILVPTRELAVQIEEMISAVVKGAHLSTCLIVGGVSRFKQIKRMG 138 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV+I TPGR++D + ++ LV+DEADRMLDMGFI ++ I L+ QT Sbjct: 139 AGVDVVIATPGRLMDLVREKFVDLSRSRFLVLDEADRMLDMGFINDVRRIAKLLCKEHQT 198 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+++++ L P +IEV +TA I ++K +L +LL Sbjct: 199 ALFSATMPKEIKELANGLLNEPVKIEVVPQGTTAVEITQKLYCV--PKNEKRNILNRLLV 256 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D + + I+F K + L+ G +V IHGN Q +R L F+EG+++++V Sbjct: 257 NPDLI-SVIVFIRTKHGADAITRYLKNMGHAVATIHGNKSQNARQSALKAFREGSVKVLV 315 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDA 359 A+D+AARG+DIP V HV N+D+P AE+Y+HRIGRTGR G G A TL +E + + A Sbjct: 316 ATDIAARGIDIPGVSHVINYDLPEDAESYVHRIGRTGRNGASGDAITLFDEESEESRLRA 375 Query: 360 IEKLIEKKVDWLN 372 +E++I K+ N Sbjct: 376 VERIIRMKLTREN 388 >gi|120599647|ref|YP_964221.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|120559740|gb|ABM25667.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] Length = 481 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 226/376 (60%), Gaps = 15/376 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY + T +Q K IPL + D+ AQTGTGKTA+F LP Sbjct: 1 MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALP-- 58 Query: 61 TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +LEK A + + R L++ PTRELA QV DN +KY + L + GG Sbjct: 59 -VLEKLAAEILVSDGNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANM 117 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q K +E+G D+L+ TPGR+ D + +L ++++ LVIDEADRMLDMGF+ I+ + Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L+ QT+LFSAT +D ++++++ L P+ + V ++ + ++ + +K Sbjct: 178 LIAPVHQTMLFSATYSDAVKQLAQKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L+ ++ + ++F + K++ +L L+ G + HG+ Q +R ++L +FK Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFK 293 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++++VA+D+AARGLDI + V N ++P AE+YIHRIGRTGRAG G+A + V+ Sbjct: 294 LGKLRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPS 353 Query: 353 DIKHIDAIEKLIEKKV 368 D + + IE LIE+K+ Sbjct: 354 DDEMLTEIEALIEQKL 369 >gi|229176129|ref|ZP_04303622.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3] gi|228607364|gb|EEK64693.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3] Length = 481 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 224/364 (61%), Gaps = 10/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ--LLQ 240 FSAT+ ++++K+S ++ P IE+ T + IEH + +K +LL+ +++ Sbjct: 183 FSATLPEDVEKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTMIE 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D+ IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +V Sbjct: 241 NPDSC---IIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG +GKA T + + + ++ I Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFITPYENRFLEEI 357 Query: 361 EKLI 364 E+ I Sbjct: 358 EEYI 361 >gi|217972083|ref|YP_002356834.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS223] gi|217497218|gb|ACK45411.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] gi|315266255|gb|ADT93108.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 469 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 12 MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 72 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P + I P RQ Sbjct: 129 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++Q +++ + +P ++V + +H + + K QLL Sbjct: 189 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFY---HLDDDKARMQALQLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN K+ + LE GFSV A+HG+++QR R + L F + ++ Sbjct: 246 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + VFN+ V E +IHRIGRTGRAG G A+T +D I Sbjct: 306 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 365 Query: 360 IEKLIEKKV 368 +E+ +E+++ Sbjct: 366 LEEYLEREI 374 >gi|229103076|ref|ZP_04233764.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28] gi|228680360|gb|EEL34549.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28] Length = 450 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDTESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|319427542|gb|ADV55616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 469 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 12 MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 72 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P + I P RQ Sbjct: 129 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++Q +++ + +P ++V + +H + + K QLL Sbjct: 189 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFY---HLDDDKARMQALQLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN K+ + LE GFSV A+HG+++QR R + L F + ++ Sbjct: 246 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + VFN+ V E +IHRIGRTGRAG G A+T +D I Sbjct: 306 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 365 Query: 360 IEKLIEKKV 368 +E+ +E+++ Sbjct: 366 LEEYLEREI 374 >gi|298483821|ref|ZP_07001993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. D22] gi|298270008|gb|EFI11597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. D22] Length = 643 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R+P++LIL PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 64 QID---VKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L+N K I + + + ++H V Q K L++++ Sbjct: 181 LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKH--VVYTVQAKDKYEALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 E++I KK ++ G++ + Sbjct: 358 ERIIGKK--FITGEMPT 372 >gi|167896715|ref|ZP_02484117.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 7894] Length = 435 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 215/371 (57%), Gaps = 16/371 (4%) Query: 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84 TPIQ ++P+ L HD+ A+TG+GKTA+F L +L L+ R V+ L+L PTREL Sbjct: 2 TPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQ---ALVLCPTREL 58 Query: 85 AAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143 A QVA + + N+ V L GG P Q + LE GA +++ TPGRI+DH +RG L Sbjct: 59 ADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPGRIMDHLDRGHLT 118 Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203 ++ + LV+DEADRMLDMGF I + P TRQTLLFSAT D + K+S+ FL++PK Sbjct: 119 LDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFLRHPK 178 Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263 R+++ ++ + + T + LL + T I FCN K+ +L Sbjct: 179 RVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVST----IAFCNTKQQCRDLLD 234 Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323 L QGF V A+HG ++QR R ++L F + ++VA+D+AARGLDI + V N DV Sbjct: 235 VLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVT 294 Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW-------LNGDLS 376 E Y+HRIGRTGRA + G A +L + ++ + IE+ + ++V+W GD + Sbjct: 295 PDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLAELKAGGD-A 353 Query: 377 SLNPPLEKIDI 387 L PP+E + I Sbjct: 354 PLLPPMETLQI 364 >gi|296130315|ref|YP_003637565.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] gi|296022130|gb|ADG75366.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] Length = 598 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 143/411 (34%), Positives = 227/411 (55%), Gaps = 21/411 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD + P++V A+ AG +P PIQ T+P+ L HD+ G A+TGTGKT F +P+L Sbjct: 50 FADFDVRPEIVAALAAAGITQPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLHR 109 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E G R+ P + L++ PTRELA QVA + + + + GG +E Q Sbjct: 110 VIAPGEDGYDRLPAPGEPQALVVVPTRELAVQVAGDLAMASTGRKVRIVQVYGGRAYEPQ 169 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L+RGADV++ TPGR++D N+ L + + +V+DEAD MLD+GF+P ++ + + P Sbjct: 170 VEALQRGADVVVGTPGRMIDLLNQRHLRLKHATEVVLDEADEMLDLGFLPDVEKLLAATP 229 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ ++ P I + P +T+++ Y ++ K L Sbjct: 230 PNRHTMLFSATMPGAVVAMARRYMSQPTHIRASAPDDEGQTVKNIKQVAYRAHALDKVEL 289 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++LQ++ I+F K+ + L ++GF+ AIHG++ Q +R + L F+ G Sbjct: 290 LARILQARGRGLT-IVFARTKRTAAKVADELVERGFAAGAIHGDLGQGAREQALRAFRHG 348 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ P + Y+HR GRTGRAG G A T V +DI Sbjct: 349 KVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFVDWDDI 408 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 I+K + L P + H R++ +P+ TG Sbjct: 409 PRWGLIDKAL------------GLGIPEPVETYSSSPHVREDLDVPEGVTG 447 >gi|163868666|ref|YP_001609875.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476] gi|161018322|emb|CAK01880.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476] Length = 467 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 152/369 (41%), Positives = 219/369 (59%), Gaps = 6/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LGL ++ + AG KP PIQ + IP++L+ HD+ GIAQTG+GKT +F LP+L+ Sbjct: 20 FTKLGLPTLLIKNLCIAGMSKPKPIQEQAIPMMLKGHDILGIAQTGSGKTLAFGLPILSQ 79 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL G R + R LIL PTRELA Q+ + K +L+ L+ GG+ Q K++ Sbjct: 80 ILALGDKRCPKTARALILAPTRELAVQIDEAIRTMAKGAHLSTCLVFGGVSRLKQIKRMA 139 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DVLI TPGR+ D + ++ L++DEADRMLDMGFI ++ I L+ RQT Sbjct: 140 AGVDVLIATPGRLRDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQT 199 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++ L +P +IEV +TA I S+K +L +LL Sbjct: 200 ALFSATMPKEIAALAKCLLNDPVKIEVAPQGTTALEITQKLYCV--PTSEKKNVLSKLL- 256 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K + L K G+ V IHGN Q +R L F+E +++++V Sbjct: 257 TNPAFDSVIVFTRTKHGADAVTLHLAKNGYLVATIHGNKSQGARQSALKAFRERSVKILV 316 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIKHIDA 359 A+D+AARG+DIP + HV N+D+P+ AE+Y+HRIGRTGR G G+A TL K + + A Sbjct: 317 ATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERTRLRA 376 Query: 360 IEKLIEKKV 368 +E+LI K+ Sbjct: 377 VERLIRMKL 385 >gi|126175665|ref|YP_001051814.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS155] gi|152999404|ref|YP_001365085.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS185] gi|160874024|ref|YP_001553340.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS195] gi|125998870|gb|ABN62945.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] gi|151364022|gb|ABS07022.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|160859546|gb|ABX48080.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] Length = 458 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 1 MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 61 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P + I P RQ Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++Q +++ + +P ++V + +H F ++ AL QLL Sbjct: 178 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQH-FYHLDDDKARMQAL--QLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN K+ + LE GFSV A+HG+++QR R + L F + ++ Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + VFN+ V E +IHRIGRTGRAG G A+T +D I Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354 Query: 360 IEKLIEKKV 368 +E+ +E+++ Sbjct: 355 LEEYLEREI 363 >gi|332534395|ref|ZP_08410235.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis ANT/505] gi|332036129|gb|EGI72604.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis ANT/505] Length = 425 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 242/418 (57%), Gaps = 9/418 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F+D ++P+VV + + G+ TPIQ K +P + D+ G AQTGTGKT +F+ Sbjct: 11 FSDFAIAPEVVAGLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLTATCHR 70 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ +A + PR LI+ PTRELA Q+ + + + NL + L+ GG +E Q +LE+ Sbjct: 71 LLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179 G D+LI T GR++D + +G +N IE++V+DEADRM D+GFI I+ + +P T R Sbjct: 131 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFDRMPDTSKRL 190 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT++ +Q+++ + NP+ +++ T + I+ + K LL L+ Sbjct: 191 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELF--HPSQEDKIKLLLTLI 248 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ + I+F N K + + L+ G V + G+++Q+ R IL+ F +G + + Sbjct: 249 E-EEWPEKAIVFANTKHSCETVYAWLKSDGHRVGMLTGDVNQKKRQTILAQFSKGDLDFL 307 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGL IP+V HVFNFD+P+ E+Y+HRIGRTGRAG G A + ++ ++ Sbjct: 308 VATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNLHE 367 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 IE+ IE + + D ++L L + I + R + P+ + R+ N S QK Sbjct: 368 IEEYIEHSIPLSHYDKTALLDDLTQPIIQR---KRNYSTGPRNRSNNSGRRPNNSYQK 422 >gi|296138846|ref|YP_003646089.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162] gi|296026980|gb|ADG77750.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola DSM 20162] Length = 536 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 150/384 (39%), Positives = 224/384 (58%), Gaps = 26/384 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ +V A+ G + IQ T+PL L +D+ G A+TG GKT F +P+L Sbjct: 38 FAELGVDQGIVDALGKRGIERTFAIQELTLPLALAGNDLIGQARTGMGKTYGFGVPLLDR 97 Query: 63 L---------EKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNY---------NLTV 103 L E G RA PR LI+ PTREL QV D+ + +L + Sbjct: 98 LVTQARADVGEDGLRALDGTPRALIIVPTRELCVQVTDDLAQASDGVRVQTTKGERDLKI 157 Query: 104 ALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGF 163 + GG P+EAQ + L++G DV++ TPGR+LD N+G L++ I+ILV+DEAD MLD+GF Sbjct: 158 TSIYGGRPYEAQIEALQKGVDVVVGTPGRLLDLANQGHLVLGKIQILVLDEADEMLDLGF 217 Query: 164 IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHC 220 +P I+ I ++VP RQT+LFSATM + ++ FL+ P + +A T ++ Sbjct: 218 LPDIERILTMVPTDRQTMLFSATMPGPIITLARTFLKQPTHVRAEHHDDSAVHERTTQYV 277 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + A K L+ ++LQ+Q +IF K+ + L ++GF V A+HG++ Sbjct: 278 Y---RAHALDKTELVAKVLQAQGRGAT-MIFTRTKRTAQKVADELGERGFKVGAVHGDLG 333 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q +R K L F++G+I ++VA+D+AARG+DI DV HV NF P + Y+HRIGRTGRAG Sbjct: 334 QVAREKALGKFRDGSIDVLVATDVAARGIDIDDVTHVINFQCPEDDKTYVHRIGRTGRAG 393 Query: 341 RHGKAFTLVAKEDIKHIDAIEKLI 364 + G A TLV +++ + I+K + Sbjct: 394 KTGTAVTLVDWDELHRWELIDKAL 417 >gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430] gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430] Length = 515 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 148/361 (40%), Positives = 212/361 (58%), Gaps = 9/361 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G V+ + +AG+ +P+PIQ + IPL+L D+ AQTGTGKTA+F LP++ Sbjct: 16 FESFGFKKSVLRGIKEAGFSEPSPIQKEAIPLILDGLDIIAQAQTGTGKTAAFGLPLINN 75 Query: 63 LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ G V LI+ PTRELA QV+D K GK + L GG P Q + LE+ Sbjct: 76 LKNDGSIEV-----LIVTPTRELAMQVSDEIFKLGKYNRVKTVSLFGGQPIRRQIELLEK 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V+I TPGR+LDH +L ++V+DE+D MLDMGF+ I+ I + + RQTL Sbjct: 131 KPQVIIATPGRLLDHLRNERLKNFYPSVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTL 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++ +++ L NPK I++ +T + I + Q + + +L+ S Sbjct: 191 LFSATMPTPIKHLAQKILSNPKLIKITQDDTTNQDISQRYYIINEQEREDAIV--RLIDS 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K IIF KK L L +GF A+HG+++QR R+K + FK+ TI ++VA Sbjct: 249 EMPQK-AIIFTRMKKEADILSERLLSRGFKAGALHGDMEQRERVKSIKAFKDSTIDILVA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HVFNF +P E+Y+HRIGRTGRAG+ G A TL + K + I+ Sbjct: 308 TDIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIK 367 Query: 362 K 362 + Sbjct: 368 E 368 >gi|229178806|ref|ZP_04306167.1| ATP-dependent RNA helicase [Bacillus cereus 172560W] gi|228604682|gb|EEK62142.1| ATP-dependent RNA helicase [Bacillus cereus 172560W] Length = 458 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFIM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|71279965|ref|YP_269372.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H] gi|71145705|gb|AAZ26178.1| ATP-dependent RNA helicase, DEAD box family [Colwellia psychrerythraea 34H] Length = 399 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 215/365 (58%), Gaps = 5/365 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L ++ V GY +PTPIQ + IP ++ +D+ GIAQTGTGKTA+F LP++ Sbjct: 3 EFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIIN 62 Query: 62 ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + + + R+LIL PTRELA+Q+ N + Y L ++ GG+ +AQ + Sbjct: 63 KFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSI 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E G D+L+ TPGR+LD G + +E+ V+DEAD MLDMGF +Q+I S +P +RQ Sbjct: 123 ELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E++ ++E L +P +I++ + T + + + S K LL +L Sbjct: 183 TLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVY--HLDKSNKVPLLFNIL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D K +IFC K + +LEK + ++H Q R + L NFK+ T++++ Sbjct: 241 TKADYEKV-LIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ ++ V N+++P NYIHRIGRT RAG+ G A + + DI+ + Sbjct: 300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTN 359 Query: 360 IEKLI 364 IE I Sbjct: 360 IENSI 364 >gi|15896005|ref|NP_349354.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum ATCC 824] gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium acetobutylicum ATCC 824] gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium acetobutylicum EA 2018] Length = 481 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 220/362 (60%), Gaps = 6/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DLGLS +++ ++ GY KP+ IQ K IP++L D+ A+TG+GKTA+F +P Sbjct: 4 LSFRDLGLSEEILKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK R P+ L+L PTRELA Q+ ++F G+ L + G P Q ++L+ Sbjct: 62 -VCEKIELEEREPQVLVLAPTRELAYQIKEDFLNIGRFKRLRCISIFGKEPISNQIRELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR+LDH RG L + ++ +IDEAD ML+MGFI +++I +P + T Sbjct: 121 QRVHIVVGTPGRVLDHIERGTLNLEKVKYFIIDEADEMLNMGFIEQVESILIKMPKNKNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ +E+ +S+ +++N + IEV T I + ++ +K LL++++ Sbjct: 181 FLFSATLPEEIVMLSKKYMKNFENIEVQNEGKTKGGIHQVYYEVESR--EKFDLLKKVIY 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + IIFC K NV ++ ++ FS AIHG + Q +R+ +++ FK G ++ Sbjct: 239 -KEVPGSSIIFCRTKNNVEDVLVKMKNMKFSCMAIHGGMLQENRIAVMNAFKRGEFTFLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N+D+P E+YIHRIGRTGR G G A T V ++ + + I Sbjct: 298 ATDVAARGIDVENVTHVINYDIPMEKESYIHRIGRTGRMGNKGIAITFVTSKEERFLKEI 357 Query: 361 EK 362 E+ Sbjct: 358 EE 359 >gi|229109888|ref|ZP_04239470.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15] gi|228673542|gb|EEL28804.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15] Length = 458 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 144/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP +L D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPFILSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|49477717|ref|YP_036595.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118477863|ref|YP_895014.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|196033783|ref|ZP_03101194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|196043209|ref|ZP_03110447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|225864437|ref|YP_002749815.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|228927528|ref|ZP_04090581.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946079|ref|ZP_04108415.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122021|ref|ZP_04251237.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201] gi|49329273|gb|AAT59919.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118417088|gb|ABK85507.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus thuringiensis str. Al Hakam] gi|195993463|gb|EDX57420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|196025518|gb|EDX64187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|225786741|gb|ACO26958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|228661364|gb|EEL16988.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201] gi|228813592|gb|EEM59877.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832136|gb|EEM77720.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 450 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|282897303|ref|ZP_06305305.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9] gi|281197955|gb|EFA72849.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9] Length = 497 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 140/362 (38%), Positives = 214/362 (59%), Gaps = 5/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LG+SP+ + + G+ PT IQ + IP +L DV G +QTGTGKTA+F LP+L Sbjct: 4 ITFQELGISPERATHLENMGFTTPTNIQSQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + R + L+L PTRELA QV D ++ + L V + GG + Q +L+ Sbjct: 64 ERLDPNK---RAVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++D RG L ++ ++ V+DEAD ML MGFI + I S P RQT Sbjct: 121 RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQERQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++ FL +P + V P +T I ++K A LQ +L+ Sbjct: 181 ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKA-LQPILE 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + +IF ++ L + L+ G SV HG++ Q++R ++L+ F+ ++ +V Sbjct: 240 MEDP-ETALIFVRTRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV NFD+P+ E Y+HRIGRTGRAG+ G A +LV + + A Sbjct: 299 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 358 Query: 361 EK 362 E+ Sbjct: 359 ER 360 >gi|187779372|ref|ZP_02995845.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC 15579] gi|187772997|gb|EDU36799.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC 15579] Length = 374 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 220/366 (60%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ + + ++PTPIQ ++I L+ +DV AQTGTGKT +F+LPM Sbjct: 4 FEELGLSDSIIDVLKNQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E + + LI+ PTRELA Q+ + K K +L + GG +Q KKL+ Sbjct: 62 -ENISPDINAIQGLIITPTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKLKNN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH NR L +++ LV+DEAD ML MGF +++I P RQTL Sbjct: 121 IHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIDNTPRKRQTLC 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++K++ +++PK + + T + I+ + T + +K L ++L + Sbjct: 181 FSATMNSEVKKLAYKNMRDPKLVIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILDEE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIFC K+ V NL L K+G++ +HG+I Q R +I+ +FK IQ ++A+ Sbjct: 239 NPFM-AIIFCRTKRRVDNLEEDLYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HVFN+D+P AE+YIHRIGRTGRAG G F VA +D +D IEK Sbjct: 298 DVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEATLDTIEK 357 Query: 363 LIEKKV 368 I+ K+ Sbjct: 358 EIKLKI 363 >gi|326383298|ref|ZP_08204986.1| DEAD/DEAH box helicase domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326198048|gb|EGD55234.1| DEAD/DEAH box helicase domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 526 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 155/421 (36%), Positives = 235/421 (55%), Gaps = 34/421 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ +V A+ G + IQ T+PL L D+ G A+TG GKT F +P+L Sbjct: 30 FAELGVDAAIVAALEADGKTRTFAIQELTLPLALGGSDLIGQARTGMGKTYGFGVPLLHR 89 Query: 63 LEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT----------VALLI 107 L R PR LI+ PTREL QV ++ E K ++T + + Sbjct: 90 LVNAESTGLRGLDNTPRALIIVPTRELCVQVTEDLEVAAKGVDVTLTDGTVRPLKITSIY 149 Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167 GG P+E Q ++L+ G DV++ TPGR+LD +G L++ + +LV+DEAD MLD+GF+P I Sbjct: 150 GGRPYEQQIEELQTGVDVVVGTPGRLLDLAQQGHLVLGKVGVLVLDEADEMLDLGFLPDI 209 Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVAT 224 + I +P RQT+LFSATM + ++ FL P I + +A T ++ + Sbjct: 210 ERIMGALPTDRQTMLFSATMPGPIVTLARTFLNRPTHIRAEHANDSAVHERTTQYVY--- 266 Query: 225 YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284 A K L+ ++LQS+ +IF K+ + L ++GFSV A+HG++ Q +R Sbjct: 267 RAHAMDKAELVARVLQSEGRGAT-MIFTRTKRTAQKVADDLAERGFSVGAVHGDLGQVAR 325 Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344 K L+ F+EG I ++VA+D+AARG+D+ DV HV N+ P+ + Y+HRIGRTGRAGR G Sbjct: 326 EKALNKFREGKIDVLVATDVAARGIDVDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGI 385 Query: 345 AFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST 404 A TLV +++ + I+K L D++ P+E + +H R+ IP +T Sbjct: 386 AITLVDWDELHRWELIDKA-------LGLDMAD---PVET--YSTSDHLREQLGIPDDAT 433 Query: 405 G 405 G Sbjct: 434 G 434 >gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Pichia angusta DL-1] Length = 470 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 222/370 (60%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL P ++ A+ + PTPIQ +++P LQ D+ GIAQTG+GKTA+F +P+L Sbjct: 69 FKELGLQPDILDAIEKLNFSTPTPIQAQSLPHSLQGRDIIGIAQTGSGKTAAFAIPILQA 128 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + +L PTRELA Q+ + F+ G N L + ++GG+ Q K+L R Sbjct: 129 LWEAQTPYF---ACVLAPTRELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMRK 185 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGR++DH K + ++ LV+DEADR+LDM F P + I +++P R+T Sbjct: 186 PHVIVATPGRLMDHLENTKGFSLKALKYLVMDEADRLLDMEFGPVLDRILNIIPRERKTY 245 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+T +++K+ L +P +I VN ST +T+ + Y K L LL + Sbjct: 246 LFSATLTSKVEKLQRASLIDPVKIAVNDKYSTVDTLIQTLMVVPDGY--KNTYLIYLL-N 302 Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + K+ I+F C + V L L GFS +HG + Q R+ L+ FK G Q+ Sbjct: 303 EYVGKSVIVFARTCAHAQKVALLARIL---GFSAIPLHGQLTQAQRLGALNKFKSGDKQI 359 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP V V N+D+P ++ YIHR+GRT RAGR GK+ +LV + D++ I Sbjct: 360 LVATDVAARGLDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELIL 419 Query: 359 AIEKLIEKKV 368 IEK+I+ K+ Sbjct: 420 RIEKVIDMKL 429 >gi|291437415|ref|ZP_06576805.1| helicase [Streptomyces ghanaensis ATCC 14672] gi|291340310|gb|EFE67266.1| helicase [Streptomyces ghanaensis ATCC 14672] Length = 463 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 220/374 (58%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F +LG+ P+ A+ G + P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 5 FRELGILPETAEALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 64 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRA+ P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 65 VTVPVDVEAGRAKPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAY 124 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL + +++ LV+DEAD MLD+GF+P ++ I + Sbjct: 125 EPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLAHVKALVLDEADEMLDLGFLPDVEKIIN 184 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231 L+P RQT+LFSATM + ++ ++ P I P T+ + Y A K Sbjct: 185 LLPVRRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTKQFVYRAHNMDK 244 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ++ ++FC K+ +L L+++GF+ A+HG++ Q +R + L F Sbjct: 245 PEMVARILQAEG-RGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 303 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TLV Sbjct: 304 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 363 Query: 352 EDIKHIDAIEKLIE 365 +DI I K +E Sbjct: 364 DDIPRWQLINKALE 377 >gi|71065503|ref|YP_264230.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4] gi|71038488|gb|AAZ18796.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4] Length = 396 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 230/375 (61%), Gaps = 15/375 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LS + AV D G+ + TPIQ K +P L D G AQTGTGKTA+F+L ++ Sbjct: 19 FTDLPLSAATLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTIMEA 78 Query: 63 LEK------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L K + PR +++ PTRELA Q+ D+ K +L ++GG +E Q Sbjct: 79 LLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALNKYTSLHSVCIMGGTNYETQQ 138 Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +LER D+LI TPGR++D ++G + ++ +E+LV+DEADRMLDMGFIP I+ + +P Sbjct: 139 HELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVGRMP 198 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKC 232 RQ+LLFSAT ++ ++ +L P +E+ T+E + +H ++ T Q K Sbjct: 199 PNTDRQSLLFSATFNQDVMGLAYRWLHEPAFVEIEPEHKTSELVDQHFYLLTEDQ---KL 255 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 +++++ + T++ IIF N+K V L H L +QG + + G++ Q+ R K L FK Sbjct: 256 EAVERII-TDTTVEKVIIFANRKDQVKRLYHKL-RQGHKIVMLSGDVIQQKREKYLQRFK 313 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 +G ++VA+D+A RG+ + DV HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++ Sbjct: 314 DGHASVLVATDVAGRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGKTGISISFVSED 373 Query: 353 DIKHIDAIEKLIEKK 367 D +I A+EK ++ K Sbjct: 374 DAFNIPALEKHLDTK 388 >gi|28211624|ref|NP_782568.1| ATP-dependent RNA helicase [Clostridium tetani E88] gi|28204066|gb|AAO36505.1| ATP-dependent RNA helicase [Clostridium tetani E88] Length = 524 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 147/372 (39%), Positives = 225/372 (60%), Gaps = 11/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGL+ ++ A+ D G+ P+ IQ + IP+VLQ DV G AQTGTGKT +F P+L Sbjct: 4 LKFNNLGLNEDILKAIEDMGFETPSKIQAEVIPIVLQGFDVIGQAQTGTGKTLAFGAPVL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + +V+ ++IL PTRELA QV K + + GG + Q K L+ Sbjct: 64 NSISNESKKVK---SIILAPTRELAIQVYKELTTVAKYTKFKLLPVYGGDSIDRQIKSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D++I TPGR+ D NR L +++IE LV+DEAD ML+MGF+ I+NI R+T Sbjct: 121 KGIDIVIGTPGRVQDLINRKALNLSHIEFLVLDEADEMLNMGFVDDIENILKSCNEDRRT 180 Query: 181 LLFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQ 237 LLFSATM E++K+++ +++ + K + + S T ++E + V ++ C +L Sbjct: 181 LLFSATMPSEIKKIAKKYMKKDAKHVAIAQNSMTVSSVEQFYYEVKQKNKFESLCKVL-- 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 S D IIFC KK V L S++++GFS +HG++ Q R+ L+ FKE TI Sbjct: 239 ---SVDEPTRAIIFCKTKKGVDELVSSMKEKGFSAEGMHGDMTQSHRLNTLNRFKERTIP 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARG+D+ D HV N+D+P E+Y+HRIGRTGRA + G A+T V ++ + Sbjct: 296 FLVATDVAARGIDVKDTSHVINYDLPQDTESYVHRIGRTGRANKKGTAYTFVTPKEFSSL 355 Query: 358 DAIEKLIEKKVD 369 I+K+ + K++ Sbjct: 356 KRIQKISKSKIN 367 >gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2] gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2] Length = 463 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 219/362 (60%), Gaps = 7/362 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LG+S K+ +L G KPTPIQ + IP V++ D+ AQTGTGKT +F+LP+L Sbjct: 3 DFLTLGISKKLTNILLSHGIGKPTPIQEQAIPAVMEGRDIIAQAQTGTGKTFAFILPILE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 L+ ++ LI+ PTRELA Q+ D +K + +L V + GG + Q KL+ Sbjct: 63 KLDPDAVHIQ---ALIVTPTRELALQITDEVQKLTAGDDDLEVLAVYGGQDVDKQLNKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR+LDH R + ++ + LV+DEAD+ML +GF+ +++I P RQT Sbjct: 120 KKVQIVVGTPGRLLDHIKRKTIDLSQADFLVLDEADQMLHIGFLDEVEDIIKETPGKRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ E++ ++ ++ P+ +++ A++++ + T + K A L QL+Q Sbjct: 180 MLFSATIPAEIRNLARKHMKEPEYMQIEKTQGPAQSVKQIAIHTIDRA--KQATLMQLIQ 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IFC K+ V L L+ GF +HG++ Q R +++ F++ +QL+V Sbjct: 238 THRPYL-AVIFCRTKRRVSKLNDVLKSNGFQCDELHGDLSQSKREQVMKRFRDAELQLLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+Y+HRIGRTGRAG G A T + D ++AI Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPLDPESYVHRIGRTGRAGMKGMAITFYSSADKPLLEAI 356 Query: 361 EK 362 EK Sbjct: 357 EK 358 >gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4] gi|74897154|sp|Q54TJ4|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName: Full=DEAD box protein 27 gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4] Length = 783 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 147/360 (40%), Positives = 208/360 (57%), Gaps = 2/360 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS ++ AV G+ +PTPIQ K IPL L D+ A TG+GKTA+F+LP+L Sbjct: 192 FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER 251 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + R R LIL PTRELA Q E + N+T L++GG+ +AQ +L + Sbjct: 252 LLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKS 311 Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV+I TPGR++DH N + ++++EIL++DEADR+LDMGF I I P RQT+ Sbjct: 312 PDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTM 371 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKCALLQQLLQ 240 LFSAT+ DE++ +++ LQ P R++V+ T+E FV Q+ S + A+L L Sbjct: 372 LFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCT 431 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 IIFC KK V L +HGN+ Q R L F++G + ++ Sbjct: 432 RVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLL 491 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+A+RGLDI V V N+++PN NYIHR+GRT RAG GK+ + + D K + I Sbjct: 492 ASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDI 551 >gi|229079638|ref|ZP_04212172.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2] gi|228703680|gb|EEL56132.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2] Length = 454 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|206970279|ref|ZP_03231232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] gi|206734856|gb|EDZ52025.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] Length = 481 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D LS ++V A+ GY PT +Q + IP+ L++ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSDYKLSTEIVRALTGLGYNHPTEVQGEVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|167035545|ref|YP_001670776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida GB-1] gi|166862033|gb|ABZ00441.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1] Length = 489 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS +++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +++ Sbjct: 102 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 161 Query: 63 LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L++ + PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 162 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 221 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 222 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 281 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + NP +E+ + +ET+E A S K LL Sbjct: 282 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 339 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L + G + + G++ Q R++ L +F+EG Sbjct: 340 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 398 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 399 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSY 458 Query: 356 HIDAIEKLIEKKV 368 + AIE+L+ +K+ Sbjct: 459 QLPAIEELLGRKI 471 >gi|94499046|ref|ZP_01305584.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65] gi|94428678|gb|EAT13650.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65] Length = 475 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 225/372 (60%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L +++ ++ D G+ +PIQ + +P L D+ G AQTGTGKTA+F++ +L Sbjct: 100 FHDFNLDARIMRSIQDLGFSYASPIQAEALPYTLAGRDIIGKAQTGTGKTAAFLITVLQK 159 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + R PR LIL PTRELA Q+A + + K +L + ++GG+ ++ Q ++L Sbjct: 160 LLTVKPEERFASEPRALILAPTRELAMQIAKDADGLSKYADLNIVTVLGGVDYDKQKEQL 219 Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 E DV++ TPGR+LD+ +G + ++ +E+LVIDEADRMLDMGFIP ++ I P Sbjct: 220 ENEVVDVVVATPGRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRGTPEKS 279 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT LFSAT ++ +SE++ P+++E+ S ET++ F++ Q ++K L Sbjct: 280 IRQTQLFSATYPYDVVALSESWTYKPEQVEIEPESVATETVKQQFISL--QETQKDNALI 337 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L+ ++T K+ IIF N++ +L L K+G + G + Q RMK L FK Sbjct: 338 EYLEKENTGKS-IIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKSEDG 396 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+A RG+ + + HVFN+++P+ E+Y+HRIGRTGRAG G A T + + + Sbjct: 397 AVLVATDVAGRGIHVDGITHVFNYNLPDDPEDYVHRIGRTGRAGESGTAITFIDEYEAYG 456 Query: 357 IDAIEKLIEKKV 368 + +E + KKV Sbjct: 457 LMDLESYLGKKV 468 >gi|254449290|ref|ZP_05062736.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HTCC5015] gi|198261099|gb|EDY85398.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HTCC5015] Length = 433 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 240/409 (58%), Gaps = 20/409 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++LGLS ++ ++ G+ TPIQ +T+PLVL+ D+ G AQTGTGK+A+F++ Sbjct: 11 FSELGLSDALLDSIQATGFEYCTPIQAQTLPLVLKGQDIAGQAQTGTGKSAAFLIATFER 70 Query: 62 ILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + R P R LIL PTRELA Q+ + E+ G+ +L +AL GG +E Q K Sbjct: 71 LLRQPAPAERKPQQVRALILAPTRELAIQIHKDAEQLGQATDLKLALAYGGANYEQQRKT 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 +E GADVLI TPGRI+D++ + + +++V+DEADRM D+GFI ++ + P + Sbjct: 131 IEAGADVLIGTPGRIIDYWKQKVFDLKYCQVVVLDEADRMFDLGFISDVRYLMRRCPEPK 190 Query: 179 Q--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 Q +LLFSAT++ +Q+++ + NP +IEV TA+ +E + +K LL Sbjct: 191 QRLSLLFSATLSLRVQELAYEHMDNPTKIEVAAEQVTADRVEQYLY--HPANDEKIPLLL 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L + ++ IIF N K+N + L+ G + G++ Q+ R +++ FK G + Sbjct: 249 GLFKHYQPQRS-IIFVNTKRNADTVWGYLKGNGIEAALLSGDVPQKKRTRMVEQFKAGEL 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +VA+D+A+RGL +P V HVFN+D+P AE+Y+HRIGRT RAG G A + ++ + Sbjct: 308 TALVATDVASRGLHVPGVSHVFNYDLPQSAEDYVHRIGRTARAGESGYALSFACEDTAFN 367 Query: 357 IDAIEKLIEKKVD--WLNGD-LSSLNPPLEKIDIAQHNHARKNNPIPQK 402 + IE+ IE + ++ D L++ PP+++ R+ P P + Sbjct: 368 LMDIEEYIEGSIPTAAVSADLLATPEPPIKR--------ERRRGPPPNR 408 >gi|284992633|ref|YP_003411187.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065878|gb|ADB76816.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus DSM 43160] Length = 611 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 216/367 (58%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+D + P VV A+ +AG + IQ T+PL L +D+ G A+TGTGKT F +PML Sbjct: 110 FSDFDVHPDVVAALAEAGITRTFAIQELTLPLALAGNDLIGQARTGTGKTLGFGVPMLQR 169 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ +P+ L++ PTREL QV+ + G + V + GG FE Q L+ Sbjct: 170 VVPPAEGGDGVPQALVVVPTRELCVQVSRDLATAGSKRGIRVQAIYGGRAFEPQVAALQA 229 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++++ TPGR+LD RG L++ +++LV+DEAD MLD+GF+P I+ I ++VP RQT+ Sbjct: 230 GVEIVVGTPGRLLDLAQRGDLILGKVKVLVLDEADEMLDLGFLPDIERILAMVPDKRQTM 289 Query: 182 LFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSATM + +S +F+ P I + S+ +T + + A K LL ++ Sbjct: 290 LFSATMPGPIVTLSRSFMTQPTHIRAHGNDEGSTVPQTTQFIY---RAHNLDKPELLSRV 346 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ++D ++FC K+ + L ++GF+ A+HG++ Q +R + L F+ G + + Sbjct: 347 LQARDRSLV-MVFCRTKRTAQKVADELVERGFAAAAVHGDLGQGAREQALRAFRSGKVDV 405 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TLV +DI Sbjct: 406 LVATDVAARGIDVTGVSHVVNYQCPEDEKTYLHRIGRTGRAGSEGVAVTLVDWDDIPRWQ 465 Query: 359 AIEKLIE 365 I K +E Sbjct: 466 LINKALE 472 >gi|146292357|ref|YP_001182781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|145564047|gb|ABP74982.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 481 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 226/376 (60%), Gaps = 15/376 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY + T +Q K IPL + D+ AQTGTGKTA+F LP Sbjct: 1 MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALP-- 58 Query: 61 TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +LEK A + + R L++ PTRELA QV DN +KY + L + GG Sbjct: 59 -VLEKLAAEILVNDDNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANM 117 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q K +E+G D+L+ TPGR+ D + +L ++++ LVIDEADRMLDMGF+ I+ + Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L+ QT+LFSAT +D ++++++ L P+ + V ++ + ++ + +K Sbjct: 178 LIAPVHQTMLFSATYSDAVKQLAQKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L+ ++ + ++F + K++ +L L+ G + HG+ Q +R ++L +FK Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFK 293 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++++VA+D+AARGLDI + V N ++P AE+YIHRIGRTGRAG G+A + V+ Sbjct: 294 LGKLRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPS 353 Query: 353 DIKHIDAIEKLIEKKV 368 D + + IE LIE+K+ Sbjct: 354 DDEMLAEIEALIEQKL 369 >gi|323343014|ref|ZP_08083245.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463078|gb|EFY08273.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 487 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 140/358 (39%), Positives = 219/358 (61%), Gaps = 6/358 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + G+ ++ ++ GY PT +Q + IP VL ++ +QTG+GKTASF +P+ Sbjct: 5 FKNYGIDDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIPICHQ 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + R P+ L+L PTRELA Q+ ++ G+ L V L G FE Q ++L+ Sbjct: 65 VEWKK---RKPQVLVLAPTRELAIQIQEDLFNLGRFKRLKVEALFGRSSFEKQAQRLKEM 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +L+ TPGR+LDH R + +++IE LVIDEAD M +MGFI I +I + +P Q LL Sbjct: 122 THILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQKLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++ + +++NP+ I++ T S + I+ + Y K ALL+ +L ++ Sbjct: 182 FSATMPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYI--VDYPDKMALLESVLITE 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFCN K+ V ++ + +E G V +HG ++QR R K+L++FK G + +VA+ Sbjct: 240 NP-DSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 D+AARGLDI DV V NFDVP E+Y HR+GRT R ++GKA T + ++K ++ I Sbjct: 299 DVAARGLDIDDVSLVVNFDVPENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLI 356 >gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4] gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4] Length = 499 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 146/375 (38%), Positives = 213/375 (56%), Gaps = 19/375 (5%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 +LG+ P++V A+ + G IQ T+PL L D+ G A+TG GKT F +P+L + Sbjct: 21 ELGVRPEIVTALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRIS 80 Query: 65 KGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYN---------LTVALLIGGIPF 112 G A + PR L++ PTREL QV + + L V + GG P+ Sbjct: 81 TGEATRELDGTPRALVIVPTRELCLQVTQDLKIAATGLTASTGSGTRPLKVLAIYGGTPY 140 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + LE+G DV++ TPGR+LD N+ KL++ +E LV+DEAD MLD+GF P I+ + Sbjct: 141 EQQTEALEKGVDVVVGTPGRLLDLANQSKLVLGKVEALVLDEADEMLDLGFHPDIEKLLR 200 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQYS 229 +VP RQT+LFSATM + ++ FL P I S A T +H + A Sbjct: 201 MVPEKRQTMLFSATMPGPIITLARTFLTKPTHIRAEAADSGATHENTTQHVY---RAHSL 257 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K ++ ++LQ++ +IFC K+ L L ++GF V AIHG++ Q +R K L Sbjct: 258 DKPEVVARILQAEGRGAT-MIFCRTKRTAQKLADDLAERGFRVGAIHGDLGQGAREKSLK 316 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 F+ G + ++VA+D+AARG+D+ DV HV N+ P + Y+HRIGRTGRAGR G A TLV Sbjct: 317 AFRSGDVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLV 376 Query: 350 AKEDIKHIDAIEKLI 364 +D+ I+K + Sbjct: 377 DWDDLPRWGLIDKAL 391 >gi|300853611|ref|YP_003778595.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528] gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528] Length = 496 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 214/363 (58%), Gaps = 6/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F D LS ++ ++ GY P+ +Q K IPL+ + D+ +QTG+GKTA+F +P Sbjct: 19 LEFKDFALSEDILKSIEKLGYKNPSQVQEKVIPLIFKNKDIIVKSQTGSGKTAAFAIP-- 76 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I EK + P+ L+L PTRELA Q+ ++F G+ + + G P Q K+L+ Sbjct: 77 -ICEKIELEEKNPQVLVLAPTRELALQIKEDFYDIGRFKRINCTAIFGKEPITTQIKELK 135 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + V++ TPGR LDH + L + I+ L+IDEAD ML+MGFI ++ + +P R T Sbjct: 136 QRTHVIVGTPGRTLDHIEKDTLSLKKIQYLIIDEADEMLNMGFIDQVKAVLDKLPKNRVT 195 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ E+ K+ ++ NP +E++ I + A KK LL +L+ Sbjct: 196 LLFSATIPQEILKLCAAYMNNPINVEIDAEDPVINRINQIYYQIEAY--KKFDLLNKLVY 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +Q ++ +IFC KKNV +L ++ +G+S +HG + Q R+ ++ FK G +V Sbjct: 254 TQRP-ESSMIFCRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKRFKRGEFIFLV 312 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+D+ ++ H+ N+D+P E+Y+HRIGRTGRAG+ G A T V ++ + ++ I Sbjct: 313 CTDVAARGIDVENITHIINYDIPMEKESYVHRIGRTGRAGKSGTAITFVTPKEYRFLEEI 372 Query: 361 EKL 363 EK Sbjct: 373 EKF 375 >gi|206971476|ref|ZP_03232426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] gi|206733461|gb|EDZ50633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] Length = 458 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFIM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. JLS] gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS] Length = 507 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 219/373 (58%), Gaps = 12/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LG+ ++ A+ + G +P IQ T+P+ L D+ G A+TG GKT +F +P+L Sbjct: 10 MTFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLL 69 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFE---KY--GKNYNLTVALLIGGIP 111 T EK + + PR LI+ PTREL QV + KY + L+V + GG P Sbjct: 70 QRVTTDTEKELSGI--PRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRP 127 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 +E Q + L +GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I Sbjct: 128 YEPQIESLRKGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERIL 187 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 P TRQ +LFSATM D + ++ F+ P I +P S+A A A K Sbjct: 188 RQTPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDK 247 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ+ D +IF K+ + L ++GF V A+HG++ Q +R K L +F Sbjct: 248 VEMVSRILQA-DGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSF 306 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++VA+D+AARG+DI D+ HV NF +P + Y+HRIGRTGRAG+ G A TLV Sbjct: 307 RTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDW 366 Query: 352 EDIKHIDAIEKLI 364 +++ I+K + Sbjct: 367 DELPRWSMIDKAL 379 >gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102] gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102] Length = 598 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 138/371 (37%), Positives = 219/371 (59%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G S ++ + D GY +P+PIQ P ++ D+ G AQTGTGKTA+F LP+L Sbjct: 47 FDGFGFSEALLKTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 106 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L G+ + P+ L+L PTRELA QVAD+F+ Y + +L V + GG F +Q L R Sbjct: 107 LASGQ---KTPQALVLAPTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQINTLRR 163 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR++DH +G L + + LV+DEAD ML MGFI ++ I +P RQ + Sbjct: 164 GVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVV 223 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E++++S+ +L++P + + T + I + + K LQ++L + Sbjct: 224 LFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPH--KLEALQRVLDA 281 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIF K + + +LE G V ++G++ Q R + + + G++ ++VA Sbjct: 282 CGG-EGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 340 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A V + + I+ +E Sbjct: 341 TDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFINNLE 400 Query: 362 KLIEKKVDWLN 372 + + ++ + Sbjct: 401 RATGQPIEAME 411 >gi|254172736|ref|ZP_04879410.1| cold-shock deAd box protein a [Thermococcus sp. AM4] gi|214032892|gb|EEB73720.1| cold-shock deAd box protein a [Thermococcus sp. AM4] Length = 392 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 223/381 (58%), Gaps = 11/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59 M F +LGLS + AV G+ PT IQ + IP +L+ D+ G +QTGTGKTA+F LP+ Sbjct: 1 MSFEELGLSESSLEAVKRKGFETPTDIQREVIPRLLEGDVDIIGQSQTGTGKTAAFALPI 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++ V+ +IL PTRELA QVAD + + V + GG P Q + L Sbjct: 61 IEAIDPKEKTVQ---AIILTPTRELALQVADEIKSLRGKKRVYVYAIYGGQPIGPQIRAL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG V++ TPGR+LDH NRG L ++++ V+DEADRMLDMGF+ I+ I P ++ Sbjct: 118 ERGVHVVVGTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPEEKR 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM + +++ +++NP+ + V+ E ++ +V ++K L+++L Sbjct: 178 ILMFSATMPMGILLLAKKYMRNPEVVLVSRDEIVPEMVDQEYVEVLP--ARKYEKLKEVL 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + GIIFC+ K+ L L + GF A++G++ Q +R + + FKEG I ++ Sbjct: 236 EEG---FYGIIFCHTKRETRELSERLRRDGFRADALNGDMSQAARERTFNRFKEGKINVL 292 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ ++ HV N+ +P E YIHRIGRTGR G+ GKA T + +I Sbjct: 293 VATDVAARGLDVREISHVINYSLPMNPEQYIHRIGRTGRMGKRGKAITFLEPGEIGRFRG 352 Query: 360 IEKLIEKKVDWLNGDLSSLNP 380 I + + +V+ LS P Sbjct: 353 IAR--KARVEVRRSHLSERIP 371 >gi|296136685|ref|YP_003643927.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] gi|295796807|gb|ADG31597.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] Length = 666 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 221/371 (59%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGL ++ A+ D GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L Sbjct: 9 FAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAK 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R + L+L PTRELA QVA+ F +Y + V + GG + Q L+R Sbjct: 69 ID---CNARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLKR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L ++ + +V+DEAD ML MGFI +++I P RQ Sbjct: 126 GAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P+ I + ++TA I+ + + K L ++L+ Sbjct: 186 LFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLH--KLDALTRILEV 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K+ L L +GF+ A++G++ Q R +++ K+G + ++VA Sbjct: 244 -EPFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A V + + AIE Sbjct: 303 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIE 362 Query: 362 KLIEKKVDWLN 372 + + + + Sbjct: 363 RATRQPITQMQ 373 >gi|22652665|gb|AAN03793.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] Length = 309 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 140/312 (44%), Positives = 199/312 (63%), Gaps = 4/312 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY P+PIQ++ IP V++ DV AQTGTGKTA F LP+L Sbjct: 1 MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G + + R L+L PTRELAAQV + EKY KN LT ++ GG+ Q ++L Sbjct: 61 ERLSNGPKRKFNQVRALVLTPTRELAAQVHGSVEKYSKNLPLTSDVVFGGVKVNPQMQRL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG DVL+ TPGR+LD N+ + + +EILV+DEADRMLDMGFI I+ I + + RQ Sbjct: 121 RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLHKNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +DE++++++ +++P I V ++TAET+E +K +L +L+ Sbjct: 181 DLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVM--DKGRKPKVLTKLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K ++F K L +LE++G S AIHGN Q +R K L+NFK G ++++ Sbjct: 239 KDND-WKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVL 297 Query: 300 VASDLAARGLDI 311 VA+D+AARGLDI Sbjct: 298 VATDIAARGLDI 309 >gi|297192239|ref|ZP_06909637.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC 25486] gi|297151271|gb|EFH31061.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC 25486] Length = 539 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 145/390 (37%), Positives = 223/390 (57%), Gaps = 21/390 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F DLG+ P+ A+ G + P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 25 FRDLGILPETAEALEAVGILSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 84 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRA+ P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 85 VTVPADVEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 144 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL ++++ LV+DEAD MLD+GF+P ++ I Sbjct: 145 EPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHVRALVLDEADEMLDLGFLPDVEKIIQ 204 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KK 231 +P RQT+LFSATM + ++ ++ P I +P T+ + Y +S K Sbjct: 205 QLPAKRQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVRNTTQRVYRAHSMDK 264 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ++ +IFC K+ ++ L ++GF+ A+HG++ Q +R + L F Sbjct: 265 PEMVSRILQAEG-RGLAMIFCRTKRTAADIADQLAQRGFASGAVHGDLGQGAREQALRAF 323 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TLV Sbjct: 324 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGTAVTLVDW 383 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 +DI I K + DL +PP Sbjct: 384 DDIPRWQLINKAL---------DLGFPDPP 404 >gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus silvanus DSM 9946] gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM 9946] Length = 538 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 147/390 (37%), Positives = 223/390 (57%), Gaps = 23/390 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F D L P+V+ A+ G+ PT IQ + IPL L+ DV G A+TGTGKT +F LP+ Sbjct: 1 MEFKDFALRPEVLAALEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIA 60 Query: 61 TILE---KGRARV------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111 LE +G +RV R PR IL PTRELA QVA + L V + GG Sbjct: 61 HKLEAPFRGDSRVASRQRGRPPRAFILTPTRELALQVAGELAWVAPH--LHVLPIYGGTG 118 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 + +Q + L RGADV++ TPGR +D+ N+G L ++++EI V+DEAD ML MGF ++ + Sbjct: 119 YGSQAEGLRRGADVVVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEKLL 178 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 P +RQT LFSAT+ ++++E ++++P + VN E + + +A A + Sbjct: 179 GATPASRQTFLFSATVPSWAKRLAERYMRDP--VHVNVVKD--EQVSYEELALQAPLQTR 234 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L ++ + + I+F K V L L+ +G IHG++ QR R ++L F Sbjct: 235 LNTLTDVIFAYAPERT-IVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRF 293 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EGT ++VA+D+AARGLDIP+V V +F +P +AE Y HR GRTGRAGR G+ Sbjct: 294 REGTDTVLVATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRSGRVILFYGP 353 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 + + ++ +E ++++ +NPP Sbjct: 354 RERRELENLEYAVKRR-------FKRVNPP 376 >gi|313893353|ref|ZP_07826927.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral taxon 158 str. F0412] gi|313442122|gb|EFR60540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral taxon 158 str. F0412] Length = 432 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 141/363 (38%), Positives = 222/363 (61%), Gaps = 6/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ +++ A+ G +PTPIQ ++IP+V + +DV AQTGTGKT +F+LP I Sbjct: 4 FKTLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++ V + LI+ PTREL Q+AD ++ G N+ + LIGG EAQ ++L R Sbjct: 61 LQRVHTDVHQEQVLIIAPTRELIKQIADEAKEIGAILNVDILPLIGGKTIEAQLQQLGRR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L ++ I +V+DEAD+ML MGF+P I+++ S RQ LL Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIESLISQTDANRQLLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ D+++ +++ ++ P + T E+I+ + +K L ++++ + Sbjct: 181 FSATIPDKIRNLAKAYMSKPVSVTAEGKHVTLESIDQRVYMMNPE--EKTERLIKMIE-E 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D I+FCN+++ V L + L G ++ +HG++ Q R +IL +F + Q++VA+ Sbjct: 238 DNPFLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HV+N+DVP + YIHRIGRTGRAG G A T +D + IE+ Sbjct: 298 DIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIER 357 Query: 363 LIE 365 I+ Sbjct: 358 AIQ 360 >gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber DSM 1279] gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279] Length = 556 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 145/381 (38%), Positives = 220/381 (57%), Gaps = 14/381 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+ L P+V A+ G+ TPIQ IPL L+ DV G A+TGTGKT +F +P+ Sbjct: 1 MEFSAFTLRPEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIA 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ R R R PR LIL PTRELA QVA E + LT+ + GG + Q + L+ Sbjct: 61 NRLDAARERGRAPRALILTPTRELALQVAKELEWLAPH--LTITPIYGGTGYGKQAEALK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR +D+ + L ++ IEI V+DEAD ML MGF ++ + P TRQT Sbjct: 119 RGTDVVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ +++SE + + I +N E I + VA A + ++L LL Sbjct: 179 LLFSATLPTWARRLSERYQKAA--IHINVIKD--EAISYEEVAIQAPIHNRLSVLSDLLF 234 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F + K +L LE + S IHG++ Q R +++ F+ G + ++V Sbjct: 235 AYAPERT-IVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLV 293 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP+V V ++ +P++ E+Y+HR GRTGRAGR GK L + + ++ + Sbjct: 294 ATDVAARGLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETL 353 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 E+ +++ + +NPP Sbjct: 354 ERELKR-------NFKRVNPP 367 >gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus NVH0597-99] gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus NVH0597-99] Length = 458 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|146308580|ref|YP_001189045.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina ymp] gi|145576781|gb|ABP86313.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp] Length = 482 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 225/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++T Sbjct: 96 FHDFKLAPELMHAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQ 155 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K+ Sbjct: 156 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAVALTKYTKLNVMSFVGGMDFDKQLKQ 215 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 216 LESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMK 275 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + NP +E+ + ++T+E A + S K LL Sbjct: 276 GDRQTLLFSATFTEDVMNLAKQWTVNPAIVEIEPENVASDTVEQHVYAVAS--SDKYKLL 333 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ ++F N+K V + L + G S + G++ Q R+K+L F+ G Sbjct: 334 YNLV-TQNAWDRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQHKRIKVLEGFRAGH 392 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ + + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 393 IRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGTSISFAGEDDAF 452 Query: 356 HIDAIEKLIEKKV 368 + IE LI +K+ Sbjct: 453 ALPPIEALIGRKI 465 >gi|326940167|gb|AEA16063.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar chinensis CT-43] Length = 455 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 60 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 Query: 361 EKLI 364 EK + Sbjct: 357 EKTL 360 >gi|295675110|ref|YP_003603634.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] gi|295434953|gb|ADG14123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] Length = 467 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 150/392 (38%), Positives = 222/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P ++ + GYV+ TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 11 FSELPLPPAMLANLTQLGYVEMTPIQAASLPIALGGHDLIAQAKTGSGKTAAFSLALLAR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ AR + ++L PTRELA QV + + N+ V L GG P Q LE Sbjct: 71 LD---ARKFDTQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L++ + LV+DEADRMLDMGF I + P RQTL Sbjct: 128 GAHVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTL 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ FL+NPK +++ ++ + + T + LL + Sbjct: 188 LFSATYPEGIAKLSQQFLRNPKEVKLAERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRP 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 248 VST----IAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E + HRIGRTGRA + G A +L + +++ + IE Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363 Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387 ++ ++ V+W +L + L PP+E + I Sbjct: 364 QVHKRDVEWHKLAELKAASNDPLLPPMETLQI 395 >gi|167586824|ref|ZP_02379212.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu] Length = 396 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/367 (38%), Positives = 216/367 (58%), Gaps = 34/367 (9%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP++V A+ AGYVKPTP+Q + IP + D+ + TG+GKTA+F+LP + Sbjct: 36 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 95 Query: 63 L-----------------EKGRARVRMPRT------LILEPTRELAAQVADNFEKYGKNY 99 G R R P+ L+L PTRELA QV YGK+ Sbjct: 96 FAQLQKAQAQQPRAPREPSNGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 155 Query: 100 N-LTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 L ++GG+ + Q L + ++L+ TPGR+LDH RG++ ++ +++LV+DEADRM Sbjct: 156 RRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 215 Query: 159 LDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN----TPSSTA 214 LDMGFI I+ I P +RQT+LFSAT+ ++ ++ L++P+RIE+ + ++ A Sbjct: 216 LDMGFIEDIETIVDATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIA 275 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +T+ + K LL LL+ + + IIF K + L L GF A Sbjct: 276 QTVHYV-----DDRDHKDRLLDHLLR-DNALDQAIIFTATKIDADQLAGRLADAGFESAA 329 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG++ Q +R + + +E ++++VA+D+AARG+DIP + HVFN+D+P AE+Y+HRIG Sbjct: 330 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 389 Query: 335 RTGRAGR 341 RTGRAGR Sbjct: 390 RTGRAGR 396 >gi|307245436|ref|ZP_07527524.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247549|ref|ZP_07529593.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254390|ref|ZP_07536228.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256597|ref|ZP_07538378.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258849|ref|ZP_07540581.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261031|ref|ZP_07542713.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263212|ref|ZP_07544832.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306853777|gb|EFM85994.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855914|gb|EFM88073.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862689|gb|EFM94645.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865007|gb|EFM96909.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867200|gb|EFM99056.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869333|gb|EFN01128.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871429|gb|EFN03153.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 593 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 136/347 (39%), Positives = 218/347 (62%), Gaps = 7/347 (2%) Query: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83 P+PIQ +TIP +L DV G+AQTG+GKTA+F LP+L ++ + R P+ L++ PTRE Sbjct: 3 PSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPTK---RHPQMLVMAPTRE 59 Query: 84 LAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142 LA QVAD E++ KN + V + GG ++ Q + L++G+ V++ TPGRILDH RG L Sbjct: 60 LAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTL 119 Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202 ++ ++ +V+DEAD ML MGFI ++ + + +P QT LFSATM + +++++ F+Q+P Sbjct: 120 DLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRFMQDP 179 Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262 + +++ +A I + + K ALL+ L + IIF K +++ Sbjct: 180 QEVKIQATQRSAPDITQSYWLVNG-FRKNDALLRFL--EVEEFDAAIIFTRTKTGTIDIT 236 Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322 E+ G+ A++G++ Q++R + L K G + ++VA+D+AARG+DI + V NFD+ Sbjct: 237 ELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVVNFDI 296 Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 P AE+Y+HRIGRTGRAGR G+A V + + + IE L++K +D Sbjct: 297 PLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPID 343 >gi|294340821|emb|CAZ89216.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Thiomonas sp. 3As] Length = 666 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 221/371 (59%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGL ++ A+ D GY P+PIQ TIP +L DV G AQTGTGKTA+F LP+L Sbjct: 9 FAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAK 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ R + L+L PTRELA QVA+ F +Y + V + GG + Q L+R Sbjct: 69 ID---CNARHTQALVLAPTRELAIQVAEAFARYAAHLPGFNVLPIYGGQSYVPQLASLKR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L ++ + +V+DEAD ML MGFI +++I P RQ Sbjct: 126 GAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM ++++++ +L++P+ I + ++TA I+ + + K L ++L+ Sbjct: 186 LFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLH--KLDALTRILEV 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K+ L L +GF+ A++G++ Q R +++ K+G + ++VA Sbjct: 244 E-PFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A V + + AIE Sbjct: 303 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIE 362 Query: 362 KLIEKKVDWLN 372 + + + + Sbjct: 363 RATRQPITQMQ 373 >gi|119469628|ref|ZP_01612497.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7] gi|119446875|gb|EAW28146.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7] Length = 425 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 152/417 (36%), Positives = 239/417 (57%), Gaps = 28/417 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F+D ++P+VV + + G+ TPIQ K +P + D+ G AQTGTGKT +F+ Sbjct: 11 FSDFAIAPEVVAGLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLTATCHR 70 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ +A + PR LI+ PTRELA Q+ + + + NL + L+ GG +E Q +LE+ Sbjct: 71 LLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179 G D+LI T GR++D + +G +N IE++V+DEADRM D+GFI I+ + +P T R Sbjct: 131 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFDRMPDTSKRL 190 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238 LLFSAT++ +Q+++ + NP+ +++ T + I E F + K LL L Sbjct: 191 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIKEELF---HPSQEDKIKLLLTL 247 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + K I+F N K + + L+ G V + G+++Q+ R IL+ F +G + Sbjct: 248 IEEEWPDK-AIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELDF 306 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGL IP+V HVFNFD+P+ E+Y+HRIGRTGRAG G A + ++ ++ Sbjct: 307 LVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNLH 366 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 IE+ IE + + D ++L L K PI Q RK+NYS+ Sbjct: 367 EIEEYIEHSIPLSHYDKAALLDDLTK-------------PIIQ-------RKRNYSN 403 >gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] Length = 758 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 131/350 (37%), Positives = 210/350 (60%), Gaps = 1/350 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LS ++ A+ G+ KPTPIQ + IP+ L D+C AQTG+GKTA+F+LP+L Sbjct: 133 FADLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPILER 192 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ RV+ R +I+ P RELA Q E+ + ++T +L +GG+P +AQ +L Sbjct: 193 LQFRSRRVQSTRVMIICPVRELATQCQSMLEQLARFTDITCSLAVGGLPLKAQEAELRNR 252 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV++CTPGR++DH K + M+++EILV+DEADR+L++GF + + + P RQT+ Sbjct: 253 PDVVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQTM 312 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT ++ ++ + ++ P RI + A+ + FV + L + Sbjct: 313 LFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAILLALCT 372 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + N I+F K + + G +HGN+ QR R++ L F++GT+ +++ Sbjct: 373 RTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEALQKFRDGTVDVLLC 432 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +D+AARG+D+ V V N+++P Y+HR+GRT RAGR+G+A TL ++ Sbjct: 433 TDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSE 482 >gi|282848965|ref|ZP_06258354.1| toxin-antitoxin system toxin component, PIN family [Veillonella parvula ATCC 17745] gi|282581240|gb|EFB86634.1| toxin-antitoxin system toxin component, PIN family [Veillonella parvula ATCC 17745] Length = 432 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 140/363 (38%), Positives = 222/363 (61%), Gaps = 6/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ +++ A+ G +PTPIQ ++IP+V + +DV AQTGTGKT +F+LP I Sbjct: 4 FKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++ V + LI+ PTREL Q++D ++ G N+ + LIGG EAQ ++L R Sbjct: 61 LQRVHTDVHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGRR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L ++ I +V+DEAD+ML MGF+P I+N+ S RQ LL Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ D+++ +++ ++ P + T E+I+ + +K L ++++ Sbjct: 181 FSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPE--EKTQRLIKMIED- 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D I+FCN+++ + L + L G ++ +HG++ Q R +IL +F + Q++VA+ Sbjct: 238 DNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HV+N+DVP+ + YIHRIGRTGRAG G A T +D + IE+ Sbjct: 298 DIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIER 357 Query: 363 LIE 365 I+ Sbjct: 358 AIQ 360 >gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str. Alaska E43] gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str. Alaska E43] gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 526 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL VV A+ D G+ P+ IQ ++IP+ L+ D+ G AQTGTGKTA++ P+L+ Sbjct: 6 FYSLGLKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILSR 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER- 121 L + LIL PTRELA QV D +K K V + GG + Q + L + Sbjct: 66 LNDTNG----IKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRKD 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+LD NR L +N ++ LV+DEAD ML+MGFI I+ I S P RQTL Sbjct: 122 NIDIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIDDIETIISNTPAERQTL 181 Query: 182 LFSATMTDELQKVSENFLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM + K+++N+++ + K + + S T IE + ++ + L +LL Sbjct: 182 LFSATMPAPIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKH--RLEALCRLLD 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + IIFC KK V L L+ +G+ V +HG++ Q R+ L FKEG++ L++ Sbjct: 240 -LDNPSSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ + HV N+D+P E+Y+HRIGRTGRA R G A++LV+ +++ + I Sbjct: 299 ATDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQI 358 Query: 361 EKLIEKKV 368 +++ + + Sbjct: 359 QRVTKSTI 366 >gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina 98AG31] Length = 486 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 234/423 (55%), Gaps = 7/423 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA LGL + A + PTPIQ ++IP LQ D+ G+AQTG+GKTA+F LP+L Sbjct: 59 ITFASLGLIEPLCKACESLNFKTPTPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVL 118 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + +L PTRELA Q++ F+ G + +++GG+ +Q L Sbjct: 119 QSLWDSPSAFF---ACVLAPTRELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALS 175 Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + V++ TPGR+ DH K + N++ L++DEADR+LDM F P I I ++P R+ Sbjct: 176 KRPHVIVATPGRLHDHLEHTKGFSLRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERK 235 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT ++ K+ L NP ++EV+ T + ++ + + K L L Sbjct: 236 TYLFSATMTTKVAKLQRASLNNPVKVEVSAKYDTVSALVQTYL--FLPFKHKDTYLV-YL 292 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + K+ I+F + L L GF +HG + Q +R+ L+ FK G L+ Sbjct: 293 ANELSGKSLIVFTRTVHDASRLSLILRTLGFPAVPLHGQLSQSARLGALNKFKSGDQSLL 352 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GK+ TLV + D++ + Sbjct: 353 VATDVASRGLDIPAVDCVINFDLPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQR 412 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 IE +I KK++ + E++ A AR+ I + F+R++K+ + S Sbjct: 413 IEGVIGKKMNEFEHQKEQVMVLGERVGEAAREVAREMREIERNGNKFNRKRKSGEMKPSK 472 Query: 420 IPL 422 I + Sbjct: 473 IKM 475 >gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 458 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676] gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24] gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24] gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676] Length = 458 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8] Length = 532 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 221/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL LS ++ A+ + G+ +PTPIQ IPL+ DV AQTGTGKT++F +P Sbjct: 5 LQFSDLSLSKEIAKAIENMGFEEPTPIQALAIPLIQAGRDVTAQAQTGTGKTSAFGIP-- 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++E A R+ + ++L PTRELA Q+A+ F ++V + GG P E Q K L Sbjct: 63 -VIENIDASQRVVQVIVLCPTRELAIQIAEEFSHLLAYLPKISVLPVYGGQPIERQLKAL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G ++I TPGR++DH R L ++++ ++V+DEAD+MLDMGF I+ I VP RQ Sbjct: 122 ANGVHIVIGTPGRVMDHLKRRTLSLDHVSMVVLDEADQMLDMGFRDDIELILKRVPQKRQ 181 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT+ + ++S+ F P+ + V T IE ++ + K L +++ Sbjct: 182 TLLFSATLPKPIIEISKRFQNRPEFVRVEYQELTVPAIEQSYIEVRDR--DKLDSLCRVI 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + IIFCN K+ +L + +G+ +HG++ Q R +++ F++GTI ++ Sbjct: 240 DVVDP-QLAIIFCNTKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRVMGGFRKGTIDIL 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ DV V N+DVP + YIHRIGRTGRAG+ G+A T V D + Sbjct: 299 IATDVAARGIDVEDVDMVINYDVPQDVDYYIHRIGRTGRAGKSGRAITFVTSRDFTKLRE 358 Query: 360 IEKLIEKKV 368 I+K I+ ++ Sbjct: 359 IQKYIKVQI 367 >gi|229035098|ref|ZP_04189045.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271] gi|228728283|gb|EEL79312.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271] Length = 481 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 220/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++K+S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPKDVEKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDITMIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|218231258|ref|YP_002367146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus B4264] gi|228939601|ref|ZP_04102185.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972459|ref|ZP_04133068.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979080|ref|ZP_04139429.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407] gi|218159215|gb|ACK59207.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus B4264] gi|228780666|gb|EEM28884.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407] gi|228787281|gb|EEM35251.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820093|gb|EEM66134.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 458 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|317474632|ref|ZP_07933906.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] gi|316909313|gb|EFV30993.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] Length = 644 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 233/384 (60%), Gaps = 10/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 + R+P++LIL PTREL Q+A + Y K + L V + GG E+Q + L+ Sbjct: 64 QIN---VNNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I+ +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+ +L N K I + + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEITRISKKYLHNAKEITIGRKNESTSNVKHVVFTVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQIY-GIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++I KK ++ G++ + EK Sbjct: 358 ERIIGKK--FIQGEMPTGKQICEK 379 >gi|308175626|ref|YP_003922331.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens DSM 7] gi|307608490|emb|CBI44861.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens DSM 7] Length = 475 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 219/363 (60%), Gaps = 6/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D +S + A+ Y +PT +Q + IP LQ+ D+ +QTG+GKTA+F +P Sbjct: 3 EFKDFSISLDIARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 I E P+ LIL PTRELAAQ+ ++ G+ + + G F+ Q +L++ Sbjct: 60 ICELADWEENKPQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 + V+ TPGR+LDH +G L ++ + +VIDEAD ML+MGFI ++ I +P R T+ Sbjct: 120 KSHVVCGTPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTM 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ D+++K+S ++++P+ IEV T + IEH FV T A K +LL+ +L + Sbjct: 180 LFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEH-FV-TRAAEEDKSSLLRDVLIT 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + IIFC K+ V+ L L++ G+ IHG + Q R +++ FK G + ++A Sbjct: 238 ENP-DSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI ++ V N+D+P E+Y+HR GRTGRAG G+A T V + + ++ IE Sbjct: 297 TDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPSESRFLNDIE 356 Query: 362 KLI 364 I Sbjct: 357 TYI 359 >gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC 43243] gi|217991428|gb|EEC57434.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC 43243] Length = 559 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 229/369 (62%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L + K++ A+ D G+ + +PIQ K IP+VL+ D+ G AQTGTGKTA++ +PML Sbjct: 26 LKFEELNVDEKILKAIGDMGFEEASPIQAKAIPVVLEGKDIVGQAQTGTGKTAAYGIPML 85 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 ++ +++ + ++L PTRELA QVAD K K + + V + GG Q K L Sbjct: 86 QSID---PKLKCVQAVVLCPTRELAIQVADEIRKLAKYMSSIKVLPVYGGQEIVRQIKSL 142 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G +++ TPGR++DH R + + ++++++DEAD MLDMGF ++ I + +P RQ Sbjct: 143 KTGVQIVVGTPGRVMDHMRRKTVKFDKVKMVILDEADEMLDMGFREDMETILTQMPEERQ 202 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T++FSATM + ++ F + + I+V T E IE + ++ K +L +L+ Sbjct: 203 TVMFSATMPKAIMDIARTFQNDAEVIKVVRKELTVENIEQYYFEVRSK--NKDEILSRLI 260 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + K ++FCN KK V +L L+ +G+ IHG++ Q R +++++F++G +++ Sbjct: 261 DIYNP-KLSVVFCNTKKQVDDLISELKGRGYFADGIHGDMKQAQRDRVMNDFRKGKTEIL 319 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G AF+ V ++I + Sbjct: 320 IATDVAARGIDVDDVDIVFNYDLPQDEEYYVHRIGRTGRAGRAGLAFSFVTGKEIYKLKD 379 Query: 360 IEKLIEKKV 368 IE+ + K+ Sbjct: 380 IERYCKTKI 388 >gi|148549632|ref|YP_001269734.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida F1] gi|161378136|ref|NP_743455.2| ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440] gi|148513690|gb|ABQ80550.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1] Length = 480 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS +++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +++ Sbjct: 93 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152 Query: 63 LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L++ + PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 153 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 212 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 213 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 272 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + NP +E+ + +ET+E A S K LL Sbjct: 273 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 330 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L + G + + G++ Q R++ L +F+EG Sbjct: 331 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 389 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 390 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 449 Query: 356 HIDAIEKLIEKKV 368 + AIE L+ +K+ Sbjct: 450 QLPAIEALLGRKI 462 >gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42] gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42] Length = 454 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|291514657|emb|CBK63867.1| Superfamily II DNA and RNA helicases [Alistipes shahii WAL 8301] Length = 690 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 221/368 (60%), Gaps = 7/368 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60 DF+ LGLS +++ AV G+ PT IQ TIP +L +D+ +QTGTGKTA+F LP+L Sbjct: 26 DFSALGLSEEMLAAVQAKGFETPTSIQRLTIPRLLSGENDIIAQSQTGTGKTAAFGLPIL 85 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +E + V+ ++IL PTRELA Q A+ Y + L++ + GG Q ++L Sbjct: 86 QQIEPSKEGVQ---SIILVPTRELAVQAAEELLSYNRERRLSITAIYGGAAMSEQLRRLS 142 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+++ TPGR+LDH RG L ++ + LV+DEAD ML+MGF+ ++ I R+ Sbjct: 143 RGVDIVVGTPGRVLDHIRRGTLKLDKVRFLVLDEADEMLNMGFVEDVEEIMGHTGEDRRV 202 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + + ++SE +++N + + V + TA+ + + + K + +++ Sbjct: 203 LLFSATMPERIIRLSEAYMRNTEVLRVESQHLTADLTNQIYFEV--READKFDAMTRIID 260 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+FC K V + L QG+S +HG++ Q R KIL F++ + ++V Sbjct: 261 IEPDF-YGIVFCRTKIGVDEVATRLVAQGYSAEGLHGDVSQAQREKILRKFRDKAVNILV 319 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+ +P +E+Y+HRIGRTGRAG G A T ++ +++ + + Sbjct: 320 ATDVAARGIDVSNLSHVINYSLPQDSESYVHRIGRTGRAGNQGTAITFISGAELRRFNWM 379 Query: 361 EKLIEKKV 368 + I+ + Sbjct: 380 MRDIKADI 387 >gi|313500476|gb|ADR61842.1| RhlB [Pseudomonas putida BIRD-1] Length = 480 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS +++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +++ Sbjct: 93 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152 Query: 63 LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L++ + PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 153 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 212 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 213 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 272 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + NP +E+ + +ET+E A S K LL Sbjct: 273 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 330 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L + G + + G++ Q R++ L +F+EG Sbjct: 331 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 389 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 390 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 449 Query: 356 HIDAIEKLIEKKV 368 + AIE L+ +K+ Sbjct: 450 QLPAIEALLGRKI 462 >gi|254381813|ref|ZP_04997176.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1] gi|194340721|gb|EDX21687.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1] Length = 518 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 218/377 (57%), Gaps = 18/377 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F DLG+ P+ A+ G V P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 36 FRDLGIFPETAEALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 95 Query: 61 ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +E GRA P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 96 VIVPADVEAGRATPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 155 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL ++ ++ LV+DEAD MLD+GF+P ++ I + Sbjct: 156 EPQVEALKKGVDVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVEKIIN 215 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI----EHCFVATYAQY 228 +P RQT+LFSATM + ++ ++ P I +P T+ +H F A Sbjct: 216 YLPPKRQTMLFSATMPGAVIGLARRYMTQPTHIRATSPEGEGVTVANIKQHVF---RAHN 272 Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 K L+ ++LQ++ +IFC K+ ++ LEK+GF+ A+HG++ Q +R + L Sbjct: 273 MDKPELVSRILQAEG-RGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQAL 331 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 F+ G + ++V +D+AARG+D+ V HV N+ P + ++HR+GRTGRAG G A TL Sbjct: 332 RAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQAPEDEKTFLHRVGRTGRAGNKGIAVTL 391 Query: 349 VAKEDIKHIDAIEKLIE 365 V +DI I K +E Sbjct: 392 VDWDDIPRWQLINKALE 408 >gi|289623983|ref|ZP_06456937.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648770|ref|ZP_06480113.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868972|gb|EGH03681.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 442 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella melaninogenica ATCC 25845] gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella melaninogenica ATCC 25845] Length = 573 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 146/375 (38%), Positives = 226/375 (60%), Gaps = 12/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ V+ A+ D + + TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 + L G +I+ PTRELA Q+ + + Y L VA+ G G ++ Sbjct: 61 SKLADGGYPESAINCVIMSPTRELAQQIDQGMQGFA--YYLDGVSCVAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + K L GADV+I TPGR + H + G + ++ + ++DEADRMLDMGF I I + Sbjct: 119 ELKSLALGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFADDIMTIAKKL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P T QT++FSATM +++++++ L+NP I++ S AE I+ Y ++K + Sbjct: 179 PATCQTIMFSATMPAKIEELAKTLLKNPVEIKLAV-SKPAEKIQQTAYVCYE--TQKMGI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ + ++ D +K IIF K+ V + SL + + +H ++DQ R ++ FK G Sbjct: 236 IKDIFKAGD-LKRVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+ +RG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R GKA T V ++DI Sbjct: 295 QIDVLVATDIVSRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNEDDI 354 Query: 355 KHIDAIEKLIEKKVD 369 IE +EK+V+ Sbjct: 355 YFFQQIESFLEKEVE 369 >gi|319425659|gb|ADV53733.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 481 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 226/376 (60%), Gaps = 15/376 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY + T +Q K IPL + D+ AQTGTGKTA+F LP Sbjct: 1 MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALP-- 58 Query: 61 TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +LEK A + + R L++ PTRELA QV DN +KY + L + GG Sbjct: 59 -VLEKLAAEILVNDGNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANM 117 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q K +E+G D+L+ TPGR+ D + +L ++++ LVIDEADRMLDMGF+ I+ + Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L+ QT+LFSAT +D ++++++ L P+ + V ++ + ++ + +K Sbjct: 178 LIAPVHQTMLFSATYSDAVKQLAQKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L+ ++ + ++F + K++ +L L+ G + HG+ Q +R ++L +FK Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFK 293 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++++VA+D+AARGLDI + V N ++P AE+YIHRIGRTGRAG G+A + V+ Sbjct: 294 LGKLRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPS 353 Query: 353 DIKHIDAIEKLIEKKV 368 D + + IE LIE+K+ Sbjct: 354 DDEMLTEIEALIEQKL 369 >gi|117921821|ref|YP_871013.1| ATP-dependent RNA helicase DbpA [Shewanella sp. ANA-3] gi|117614153|gb|ABK49607.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 479 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 220/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 22 MAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 81 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 82 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 138 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH R +L ++N+ +LV+DEADRML+MGF P + I P RQ Sbjct: 139 EHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 198 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++Q +++ + +P ++V + TIE F ++ AL QLL Sbjct: 199 TLLFSATFPEQIQSIAKQIMYDPVMVKVAV-THEKSTIEQHFYHLDDDKARMQAL--QLL 255 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ ++FCN K+ + L GFSV A+HG+++QR R + L F + ++ Sbjct: 256 LLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVL 315 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + VFN+ V E +IHRIGRTGRAG G AFT +D I Sbjct: 316 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIAL 375 Query: 360 IEKLIEKKV 368 +E+ +E+ + Sbjct: 376 LEEYLERDI 384 >gi|326795505|ref|YP_004313325.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1] gi|326546269|gb|ADZ91489.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea MMB-1] Length = 443 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 145/374 (38%), Positives = 227/374 (60%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L +V+ +V + G+ + IQ T+P L+ +D+ G AQTGTGKTA+F+L M++ Sbjct: 63 FHDLNLPDRVLKSVSEMGFEYCSEIQAATLPATLEGYDLIGQAQTGTGKTAAFLLAMVSD 122 Query: 63 -----LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +E+ RAR M R LI+ PTRELA Q+AD EK +N +L V L+GG+ +E Q + Sbjct: 123 FLDYPVEEERAR-NMARGLIIAPTRELALQIADEAEKITQNCSLNVISLVGGMSYEKQKR 181 Query: 118 KLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 LE D+L+ TPGR+LD K ++N +E+LV+DEADRML MGFIP +++I + P Sbjct: 182 ALETERVDILVATPGRLLDFARSKKAMLNKVEVLVLDEADRMLSMGFIPDVKSIIRMTPH 241 Query: 177 T--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQT+LFSAT ++Q ++ + PK + V +T + I+ A +K + Sbjct: 242 KERRQTMLFSATFPKDIQNLARQWTYFPKEVSVVPKEATNKNIDQVIYTVEA--DQKWPV 299 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L+ L++ D + IIF N++ L L++ + + G + Q R+K L NFK+G Sbjct: 300 LKSLIED-DGNQRTIIFANRRDETRELYELLKEAKINCAILSGEVSQDKRVKTLKNFKDG 358 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 IQ++VA+D+A RG+ + ++ V N+ +P E+Y+HRIGRTGR G GK+ + +++D Sbjct: 359 RIQVLVATDVAGRGIHVDNIELVVNYTLPEDPEDYVHRIGRTGRGGEMGKSVSFASEDDA 418 Query: 355 KHIDAIEKLIEKKV 368 I IE ++ +K+ Sbjct: 419 FLIPEIEGVVGEKI 432 >gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. KMS] gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS] Length = 507 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 219/373 (58%), Gaps = 12/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LG+ ++ A+ + G +P IQ T+P+ L D+ G A+TG GKT +F +P+L Sbjct: 10 MTFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLL 69 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFE---KY--GKNYNLTVALLIGGIP 111 T EK + + PR LI+ PTREL QV + KY + L+V + GG P Sbjct: 70 QRVTTDTEKELSGI--PRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRP 127 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 +E Q + L +GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I Sbjct: 128 YEPQIESLRKGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERIL 187 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 P TRQ +LFSATM D + ++ F+ P I +P S+A A A K Sbjct: 188 RQTPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDK 247 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ++ +IF K+ + L ++GF V A+HG++ Q +R K L +F Sbjct: 248 VEMVSRILQAEGRGAT-MIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSF 306 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++VA+D+AARG+DI D+ HV NF +P + Y+HRIGRTGRAG+ G A TLV Sbjct: 307 RTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDW 366 Query: 352 EDIKHIDAIEKLI 364 +++ I+K + Sbjct: 367 DELPRWSMIDKAL 379 >gi|326491859|dbj|BAJ98154.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 786 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 154/390 (39%), Positives = 221/390 (56%), Gaps = 18/390 (4%) Query: 2 DFADLG-LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 DF + + P V+ V + + KPTPIQ ++ P+ D+ IA+TG+GKT SF LP+L Sbjct: 368 DFKEASTIFPSVIMKVTEK-FTKPTPIQAQSWPIARSGRDIIAIAETGSGKTLSFGLPIL 426 Query: 61 T-ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 IL K + R P L+L PTRELA Q AD E G L + GG P E Sbjct: 427 AQILSKQNSTSGGKRTPLMLVLAPTRELAMQTADVCEAAGATCGLKTLCVYGGSPREGNV 486 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ G D+LI TPGR++D G +++ ++ LV+DEADRMLDMGF P I+ I + VP Sbjct: 487 KALKAGVDLLIATPGRLIDLLQEGVAVLDKVQHLVLDEADRMLDMGFEPAIRQIIAAVPK 546 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEV-------NTPSSTAETIEHCFVATYAQYS 229 TRQTL+FSAT +Q ++ FL+ P ++ + + P++ + V TY Sbjct: 547 TRQTLMFSATWPLSIQSLANEFLREPAKVTIGVKQEQSDGPTANRRVTQIVEVMTYRDKE 606 Query: 230 KKCALLQQLLQS-QDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 + LQ LL + KN I +F KK + +L ++G+ V IHG+ Q R K Sbjct: 607 HR---LQDLLHKLHKSRKNRILVFALYKKEAERIEQTLRRKGWKVQGIHGDKSQALRSKA 663 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 + +F+ G L+VA+D+AARGLDIPDV +V N+ P E+Y+HRIGRTGRAG+ G A+T Sbjct: 664 IESFRSGEEPLLVATDVAARGLDIPDVEYVINYTFPLTIEDYVHRIGRTGRAGKTGTAYT 723 Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377 ED H +++++ + + DL S Sbjct: 724 FFTDEDKTHAGELQQVLREANQDIPQDLMS 753 >gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864] Length = 594 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 155/411 (37%), Positives = 231/411 (56%), Gaps = 15/411 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LG+ P +V A G+ PTPIQ ++IP+ L D+ G+A+TG+GKTASF LP+L Sbjct: 148 FQALGIVPSLVEACSRMGFKAPTPIQRQSIPVALTGRDIIGLAETGSGKTASFALPVLQK 207 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEK + LIL PTRELA Q+++ FE G + +++GG+ Q L + Sbjct: 208 LLEKPQPLF----ALILTPTRELAYQISEQFEALGSTIGVKCCVIVGGMDMTTQAIALSK 263 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +LI TPGRI+DH K ++ L++DEADR+L+M F + I +P R T Sbjct: 264 KPHILIATPGRIVDHLENTK---GYLKFLIMDEADRILNMDFEEEVDKILKAIPKERNTY 320 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 L+SATMT ++ K+ L+NP +IEV T T T+ ++ A++ K C L L + Sbjct: 321 LYSATMTSKVAKLQRASLRNPVKIEVATKYQTVGTLVQQYLFIPARF-KDCYLTYAL--N 377 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + IIF N + L GF +HG + Q R+ L+ FKE + ++VA Sbjct: 378 QLAGNSTIIFTMTCANAQRVALMLRNLGFPAIPLHGQLTQPKRLGALNKFKEQSRSILVA 437 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G++ T+V + D++ IE Sbjct: 438 TDVASRGLDIPHVDLVINYDIPTHSKDYIHRVGRTARAGRSGRSITMVTQYDVELFQRIE 497 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH----NHARKNNPIPQKSTGFDR 408 +LI KK++ + + LE+ AQ +N+P K G DR Sbjct: 498 QLINKKMELYESEEEQVLMLLERTSEAQRMAITQMRDENDPRNGKRRGHDR 548 >gi|218131753|ref|ZP_03460557.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697] gi|217986056|gb|EEC52395.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697] Length = 644 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 233/384 (60%), Gaps = 10/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 + R+P++LIL PTREL Q+A + Y K + L V + GG E+Q + L+ Sbjct: 64 QIN---VNNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I+ +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+ +L N K I + + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEIARISKKYLHNAKEITIGRKNESTSNVKHVVFTVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQIY-GIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++I KK ++ G++ + EK Sbjct: 358 ERIIGKK--FIQGEMPTGKQICEK 379 >gi|329956340|ref|ZP_08296937.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056] gi|328524237|gb|EGF51307.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056] Length = 645 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 143/384 (37%), Positives = 232/384 (60%), Gaps = 10/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 + R+P++LIL PTREL Q+A + Y K + L V + GG E+Q + L+ Sbjct: 64 QIN---VNNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I+ +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+ +L N K I + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEIARISKKYLHNAKEITIGRKNEGTNNVKHVVFTVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ A+HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADALHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++I KK ++ G++ + EK Sbjct: 358 ERIIGKK--FIQGEMPTGKQICEK 379 >gi|229100254|ref|ZP_04231145.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29] gi|229115941|ref|ZP_04245337.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3] gi|228667530|gb|EEL22976.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3] gi|228683149|gb|EEL37136.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29] Length = 450 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|52143016|ref|YP_083814.1| ATP-dependent RNA helicase [Bacillus cereus E33L] gi|51976485|gb|AAU18035.1| ATP-dependent RNA helicase [Bacillus cereus E33L] Length = 450 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 223/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|303283774|ref|XP_003061178.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457529|gb|EEH54828.1| predicted protein [Micromonas pusilla CCMP1545] Length = 456 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 222/371 (59%), Gaps = 13/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LG+ ++ A D G+ P+ IQ +IP LQ DV G+AQTG+GKT +F LP+L Sbjct: 17 FTVLGVCEELATAAADLGWKDPSEIQRASIPQALQGKDVIGLAQTGSGKTGAFALPILQE 76 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+K +A L+L PTRELA Q+++ FE G + A+L+GG+ AQ+ +L + Sbjct: 77 LLDKPQAFF----ALVLSPTRELAIQISEQFEALGAGIGVKCAVLVGGVDMMAQSIQLGK 132 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR++DH K + +++L +DEADR+L++ F I I ++P R+T Sbjct: 133 RPHVVVGTPGRVVDHLTNTKGFGLKQLQVLCLDEADRLLNLDFEQEIDQILKVIPRDRRT 192 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQL 238 LFSATMT ++ K+ L+NP ++EV+ ST ++ ++ FV + C L +L Sbjct: 193 QLFSATMTSKVAKLQRACLRNPVKVEVSAKYSTVASLKQQYLFVPAKHKDCYACYLFNEL 252 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 S TM C+Q + + + +L GF IHG + Q R+ L+ FK G + Sbjct: 253 --SASTMMVFTRTCDQTRKLALVARNL---GFGAIPIHGQMSQPKRLGALNKFKAGERNV 307 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGLDIP V V NFDVP +++Y+HR+GRT RAGR G A TLV + D++ Sbjct: 308 LVATDVASRGLDIPAVDVVINFDVPQNSKDYVHRVGRTARAGRSGLAITLVTQYDVELYQ 367 Query: 359 AIEKLIEKKVD 369 IE+LI KK+D Sbjct: 368 KIERLINKKLD 378 >gi|302536730|ref|ZP_07289072.1| ATP-dependent RNA helicase [Streptomyces sp. C] gi|302445625|gb|EFL17441.1| ATP-dependent RNA helicase [Streptomyces sp. C] Length = 596 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 220/377 (58%), Gaps = 18/377 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F +LG+ P+ A+ G V P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 63 FRELGIFPETAEALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 122 Query: 61 ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +E GRAR P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 123 VVVPADVEAGRARPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 182 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL ++ ++ LV+DEAD MLD+GF+P ++ I + Sbjct: 183 EPQVEALKKGVDVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVEKIMN 242 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRI----EVNTPSSTAETIEHCFVATYAQY 228 L+P RQT+LFSATM + ++ ++ P I E ++ A +H F A Sbjct: 243 LLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRAVSEDGEGATVANITQHVF---RAHN 299 Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 K L+ ++LQ++ +IFC K+ ++ LE++GF+ A+HG++ Q +R + L Sbjct: 300 MDKPELVSRILQAEG-RGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQAL 358 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 F+ G + ++V +D+AARG+D+ V HV N+ P + ++HR+GRTGRAG G A TL Sbjct: 359 RAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTFLHRVGRTGRAGNKGTAVTL 418 Query: 349 VAKEDIKHIDAIEKLIE 365 V +DI I K +E Sbjct: 419 VDWDDIPRWQLINKALE 435 >gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] Length = 455 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 60 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 Query: 361 EKLI 364 EK + Sbjct: 357 EKTL 360 >gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4] gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4] Length = 458 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|146293591|ref|YP_001184015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|145565281|gb|ABP76216.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 427 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 145/365 (39%), Positives = 210/365 (57%), Gaps = 10/365 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++ + + YV PTP+Q TIP VL DV A TG+GKTA+F +P+L Sbjct: 11 FAQLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQ 70 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117 L + + R L+L PTRELA QVAD+F Y + N L + GG+ AQ + Sbjct: 71 LVDAKTEDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQ 130 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADVL+ TPGR+LD + + +N + LV+DEADRML +GF + + +P Sbjct: 131 SLRSGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPVK 190 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSAT +E+++++ L NP ++ S E+ H V T + K ALL Sbjct: 191 KQTLLFSATFPEEVRELTAKLLNNPLEYQLQ---SEQESTIHQRVITVNR-PMKTALLAH 246 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ + +IF + K +L L K+G + HG+ Q +R ++L FK G I Sbjct: 247 LIK-EHQWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEIS 305 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ ED H Sbjct: 306 VLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHF 365 Query: 358 DAIEK 362 IEK Sbjct: 366 GVIEK 370 >gi|218903612|ref|YP_002451446.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|218537452|gb|ACK89850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] Length = 450 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 223/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|269797693|ref|YP_003311593.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008] gi|269094322|gb|ACZ24313.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM 2008] Length = 432 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 140/363 (38%), Positives = 221/363 (60%), Gaps = 6/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ +++ A+ G +PTPIQ ++IP+V + +DV AQTGTGKT +F+LP I Sbjct: 4 FKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++ V + LI+ PTREL Q++D ++ G N+ + LIGG EAQ ++L R Sbjct: 61 LQRVHTDVHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGRR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L ++ I +V+DEAD+ML MGF+P I+N+ S RQ LL Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ D+++ +++ ++ P + T E+I+ + +K L ++++ Sbjct: 181 FSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPE--EKTQRLIKMIED- 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D I+FCN+++ + L + L G ++ +HG++ Q R +IL +F + Q++VA+ Sbjct: 238 DNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HV+N+DVP + YIHRIGRTGRAG G A T +D + IE+ Sbjct: 298 DIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIER 357 Query: 363 LIE 365 I+ Sbjct: 358 AIQ 360 >gi|153006338|ref|YP_001380663.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152029911|gb|ABS27679.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. Fw109-5] Length = 455 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 140/335 (41%), Positives = 204/335 (60%), Gaps = 10/335 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L LSP+ + A+ AG+ PTPIQ + IP L DV G A TGTGKTA+F+LP++ Sbjct: 6 FAELHLSPEALAALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLLPLIDR 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L G+ R L+L PTRELA Q+ + E++G + A++IGG+ Q + L + Sbjct: 66 L-AGKPGTR---ALVLAPTRELALQIGEELERFGHARRVRGAVIIGGVGMAQQAEALRQK 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++I TPGR++DH +G ++ IE LV+DEADRMLDMGF P + I +P RQTLL Sbjct: 122 REIVIATPGRLVDHLEQGNARLDGIEALVLDEADRMLDMGFKPQLDRILRRLPKQRQTLL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLLQS 241 FSATM E+ + L++P R+EV +TA E F+A Q+ K LL L + Sbjct: 182 FSATMAGEVADFARAHLRDPVRVEVARSGTTAARAEQQVFLAD--QHEKLPLLLTLLERD 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D+ +IF K+ + + + G V IH + Q R L FK+GT +++VA Sbjct: 240 GDST---LIFTRTKRRADKIWKHIGRAGHKVARIHADRSQAQRRMALDGFKDGTYRVLVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336 +D+AARG+D+ ++GHV NFD+P+ E+Y+HR+GRT Sbjct: 297 TDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRT 331 >gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio] gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio] Length = 512 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 159/462 (34%), Positives = 253/462 (54%), Gaps = 34/462 (7%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ +V+C D G+ KPT IQI+ IP+ LQ DV G+A+TG+GKT +F +P+L Sbjct: 81 FKELGVT-EVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQ 139 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L R+ TL+L PTRELA Q+A+ F+ G + + A+++GGI +Q L + Sbjct: 140 SLLACAQRLH---TLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAK 196 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V+I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 197 KPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRT 256 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ LQ+P + V++ +T + ++ ++ ++Y K C L+ L Sbjct: 257 FLFSATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKY-KDCYLVSIL-- 313 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++FC N + L G + +HG + Q R+ L+ FK + +++ Sbjct: 314 NELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLL 373 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GK+ T V + D++ I Sbjct: 374 ATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 433 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 E LI KK+ + +E++ AQ F R + SS+K Sbjct: 434 EALIGKKLPAFPTQEEEVMMLVERVSEAQR---------------FARIEMKESSEKRKR 478 Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMP--AFMLPKNRGK 460 P Q++ E+ S G R + F P RG+ Sbjct: 479 P--------SAAQEVDEDGEQSSGVRKKVKGGGFRRPSRRGR 512 >gi|217962948|ref|YP_002341526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|229142204|ref|ZP_04270728.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26] gi|217066069|gb|ACJ80319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|228641222|gb|EEK97529.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26] Length = 481 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 221/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH A +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFE--AIEDEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|319900501|ref|YP_004160229.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] gi|319415532|gb|ADV42643.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] Length = 655 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 234/384 (60%), Gaps = 10/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSAEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 + + R+P++LIL PTREL Q+A + Y K N L V + GG E+Q + L+ Sbjct: 64 QINVSK---RIPQSLILCPTRELCLQIAGDLNDYSKYINGLRVLPVYGGSSIESQIRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G +++ TPGR+LD R + ++ I+ +V+DEAD ML+MGF I I + VP R T Sbjct: 121 QGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L + K I + + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEIARISKNYLHDAKEITIGRKNESTNNVKHVVFCVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRDI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++I KK + G++ + N EK Sbjct: 358 ERIIGKKFE--QGEMPTANQICEK 379 >gi|32565321|ref|NP_498260.2| DEAD boX helicase homolog family member (ddx-23) [Caenorhabditis elegans] gi|14550364|gb|AAK67224.1|U13070_15 Hypothetical protein F01F1.7 [Caenorhabditis elegans] Length = 730 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 149/399 (37%), Positives = 218/399 (54%), Gaps = 35/399 (8%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++ + G +V AV + GY++PTPIQ + IP+ LQ DV G+A+TG+GKTA+F+LP+L Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361 Query: 62 I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +E+ R P +I+ PTRELA Q+ + K+GK + +IGG E Q Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQ 421 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL G +V+I TPGR+LD LL+N +++DEADRMLDMGF P +Q + +P Sbjct: 422 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481 Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 T RQT++F+ATM+ +++++ +L+ P + + + Sbjct: 482 DTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA 541 Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270 E +E V +K L ++L+SQ IIF NQKK L L K GF Sbjct: 542 GKPTERVEQ--VVYMVPEDRKRKKLVEVLESQ-FQPPIIIFVNQKKGADMLSKGLTKLGF 598 Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330 +HG Q R L KEGT ++VA+D+A RG+D+ DV V N+D+ E+Y Sbjct: 599 KPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYT 658 Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIK-HIDAIEKLIEKKV 368 HRIGRTGRAG+HGKA T + +D + D + L+E V Sbjct: 659 HRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPV 697 >gi|254388923|ref|ZP_05004154.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC 27064] gi|197702641|gb|EDY48453.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC 27064] Length = 891 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 217/376 (57%), Gaps = 12/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F DLG+ + A+ G + P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 46 FRDLGILAETAEALEAVGILNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 105 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRAR P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 106 VTVPADVEAGRARPDQLSEAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAY 165 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L +G DV++ TPGR+LD + KL ++ + LV+DEAD MLD+GF+P ++ I Sbjct: 166 EPQVEALRKGVDVIVGTPGRLLDLAGQKKLDLSQVRALVLDEADEMLDLGFLPDVEKIIQ 225 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KK 231 L+P RQT+LFSATM + ++ ++ P I P T+ + Y +S K Sbjct: 226 LLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANITQRVYRAHSMDK 285 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ++ +IFC K+ ++ L ++GF+ A+HG++ Q +R + L F Sbjct: 286 PEMVSRILQAEG-RGLAMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAF 344 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HR+GRTGRAG G A TLV Sbjct: 345 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRVGRTGRAGASGTAVTLVDW 404 Query: 352 EDIKHIDAIEKLIEKK 367 +DI I K ++ K Sbjct: 405 DDIPRWQLINKALDLK 420 >gi|307728119|ref|YP_003905343.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1003] gi|307582654|gb|ADN56052.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003] Length = 467 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 149/392 (38%), Positives = 221/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P + + GYV+ TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 11 FSQLPLPPAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ AR + ++L PTRELA QV + + N+ V L GG P Q LE Sbjct: 71 LD---ARNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ FL+NPK +++ + + + T + LL + Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 248 VST----IAFCNTKQQCRDLLEVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + IE Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363 Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387 + +++V+W +L++ L PP+E + I Sbjct: 364 QAQKREVEWHKLSELTATSNEPLLPPMETLQI 395 >gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus anthracis CI] gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 454 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 223/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|168703446|ref|ZP_02735723.1| probable ATP-dependent RNA helicase [Gemmata obscuriglobus UQM 2246] Length = 437 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 141/373 (37%), Positives = 212/373 (56%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL P +V A D GY +PTP+Q IP L+ DV AQTGTGKTA F+LP+L Sbjct: 1 MPFKALGLHPLIVRATQDLGYQEPTPVQAGAIPAALEGRDVLATAQTGTGKTAGFLLPIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + R R L+L PTRELA Q+ D K+ + AL++GG P Q + Sbjct: 61 HRLLAQPRGGTR---ALVLSPTRELAEQIQDVCTGLAKHTPIQSALVVGGRPEGPQERAF 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ TPGR+LD R ++ LV+DEAD + DMGF+P ++ I + +P + Sbjct: 118 RAGVDIIVATPGRLLDMLQRNVAKLDRATTLVLDEADSLFDMGFLPDVKRIMARMPARKH 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM + +++ L+NP +++ SSTA I K ALL+ LL Sbjct: 178 TLLFSATMPPVIGQLANEVLRNPAVVQIGRRSSTAVGITQAAYPVPTHL--KTALLRHLL 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + M + ++F K + + GF+V +H N R + F++G Q+M Sbjct: 236 RETE-MPSVLVFTRTKFGAKKIARQVAADGFTVAELHSNRTPSQRTAAMEGFRQGKFQVM 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+++AARGLD+ + HV + DVP+ E+Y+HRIGRTGRAG G AF L ++++ + Sbjct: 295 VATNIAARGLDVNHITHVISTDVPDVPEDYVHRIGRTGRAGATGDAFILFSRDEEDSLAR 354 Query: 360 IEKLIEKKVDWLN 372 IE+ + +++ + Sbjct: 355 IERQVGQRLPRVT 367 >gi|154688021|ref|YP_001423182.1| DbpA [Bacillus amyloliquefaciens FZB42] gi|154353872|gb|ABS75951.1| DbpA [Bacillus amyloliquefaciens FZB42] Length = 479 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 136/363 (37%), Positives = 222/363 (61%), Gaps = 6/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F + +SP++ A+ Y +PT +Q + IP LQ+ D+ +QTG+GKTA+F +P+ Sbjct: 3 EFNEYAISPEIRRALNGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPICE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + E + P+ LIL PTRELAAQ+ ++ G+ + + G F+ Q +L++ Sbjct: 63 LAEWEENK---PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 + V+ TPGR+LDH +G L + + +VIDEAD ML+MGFI ++ I +P R T+ Sbjct: 120 KSHVVAGTPGRVLDHIEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTM 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ D+++K+S ++++P+ IEV T + IEH FV T + K +LL+ +L + Sbjct: 180 LFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEH-FV-TRTEEEDKTSLLRDVLIT 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + IIFC K+ V+ L L++ G+ IHG + Q R +++ FK G + ++A Sbjct: 238 ENP-DSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI ++ V N+D+P E+Y+HR GRTGRAG G+A T V + + ++ IE Sbjct: 297 TDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPFEARFLNDIE 356 Query: 362 KLI 364 I Sbjct: 357 TYI 359 >gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] Length = 481 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 218/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ GLS KV A+ Y PT +Q K +P+ L+ DV +QTG+GKTASF +P+ + Sbjct: 6 FSQYGLSDKVAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + P+ L+L PTRELAAQV ++ G+ + A + G PF Q +L++ Sbjct: 66 VNWEENK---PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH + L + I LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S +++ P +E+ T TI+H ++ + +K LL+ + + Sbjct: 183 FSATLPEDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVIS--VENERKFELLKDVTTVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++ V L L+ G+ IHG + Q R +++++FK+G + +VA+ Sbjct: 241 NP-DSCIIFCRTQEQVNTLLDDLDDFGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG+ GKA T V + + + IE+ Sbjct: 300 DVAARGIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEKRMLSEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|328555607|gb|AEB26099.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens TA208] gi|328913984|gb|AEB65580.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens LL3] Length = 479 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 219/363 (60%), Gaps = 6/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D +S + A+ Y +PT +Q + IP LQ+ D+ +QTG+GKTA+F +P Sbjct: 3 EFKDFSISLDIARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 I E P+ LIL PTRELAAQ+ ++ G+ + + G F+ Q +L++ Sbjct: 60 ICELADWEENKPQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQ 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 + V+ TPGR+LDH +G L ++ + +VIDEAD ML+MGFI ++ I +P R T+ Sbjct: 120 KSHVVCGTPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTM 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ D+++K+S ++++P+ IEV T + IEH FV T A K +LL+ +L + Sbjct: 180 LFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEH-FV-TRAAEEDKSSLLRDVLIT 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + IIFC K+ V+ L L++ G+ IHG + Q R +++ FK G + ++A Sbjct: 238 ENP-DSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI ++ V N+D+P E+Y+HR GRTGRAG G+A T V + + ++ IE Sbjct: 297 TDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPSESRFLNDIE 356 Query: 362 KLI 364 I Sbjct: 357 TYI 359 >gi|206975837|ref|ZP_03236748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|206745931|gb|EDZ57327.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] Length = 481 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 221/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH A +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKVAGITTDKIEHTLFE--AIEDEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|149181312|ref|ZP_01859810.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. SG-1] gi|148851037|gb|EDL65189.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. SG-1] Length = 481 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 140/362 (38%), Positives = 216/362 (59%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD +S ++ A+ Y PT +Q K IP L+ D+ AQTG+GKTA+F +P+ + Sbjct: 6 FADYHVSEEIQRALAVLKYETPTEVQNKVIPSALENQDLVVKAQTGSGKTAAFGIPVSDM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ LIL PTRELA QV ++ G+ + + G PF Q +L++ Sbjct: 66 IEWEEKK---PQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR++DH R L +N I+ L+IDEAD ML+ GFI ++ I +P R T++ Sbjct: 123 THVVVGTPGRVMDHIERETLDLNQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMV 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++ + ++ NP +IE+ + TA+TIEH + + +K +LL+ + + Sbjct: 183 FSATLPKDVENLCHKYMNNPLQIEIESTGVTADTIEHSLIEVREE--EKISLLKDITVVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + +IFC K+NV + LEK G+ +HG ++Q R ++ FK G + +VA+ Sbjct: 241 NP-DSCLIFCRTKENVDTVYSELEKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI +V V N+DVP E+Y+HR GRTGRAG GKA TL + K I AIE+ Sbjct: 300 DVAARGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITLSTPYEGKFIKAIER 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|294139293|ref|YP_003555271.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12] gi|293325762|dbj|BAJ00493.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12] Length = 469 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 221/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY T IQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 12 MSFSTLTLKPELIENLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ +L+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 72 HKLDVKRFRIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R L + N+ LV+DEADRML+MGF+P + I + +P RQ Sbjct: 129 EHGAHIIVGTPGRIIDHLSRDLLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQ 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT ++QKV+E + P ++V + + + TI+ F + ++ AL LL Sbjct: 189 TLLFSATFPKQIQKVAEQIMFKPVMVKVAS-THDSNTIDQHFYQIDSNKDRQKALRLLLL 247 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + + ++FCN K+ ++ +L GFSV A+HG+++QR R L F + +M Sbjct: 248 QHRP--DSAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIM 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N++ E +IHRIGRTGRAG G AFT +D I Sbjct: 306 VATDVAARGLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGTAFTFYTLDDDYKIKL 365 Query: 360 IEKLIEKKV 368 +E+ +E+ + Sbjct: 366 LEEYLERDI 374 >gi|304411084|ref|ZP_07392700.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307301793|ref|ZP_07581551.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304350619|gb|EFM15021.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306913831|gb|EFN44252.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 469 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 221/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 12 MAFSTLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 72 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P + I P RQ Sbjct: 129 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQ 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++Q +++ + +P ++V + +H + + K QLL Sbjct: 189 TLLFSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFY---HLDDDKARMQALQLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN K+ + L+ GFSV A+HG+++QR R + L F + ++ Sbjct: 246 LLEHKPESAVVFCNTKRETQKVADELDGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + VFN+ V E +IHRIGRTGRAG G A+T +D I Sbjct: 306 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 365 Query: 360 IEKLIEKKV 368 +E+ +E+++ Sbjct: 366 LEEYLEREI 374 >gi|32490970|ref|NP_871224.1| hypothetical protein WGLp221 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166176|dbj|BAC24367.1| deaD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 583 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 149/374 (39%), Positives = 226/374 (60%), Gaps = 11/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F++LGL ++ A+ D GY KP+PIQ K IP +L+ +DV GIAQTG+GKTA+F LP+L Sbjct: 6 LSFSELGLKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQV---ADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 ++ ++++P+ +IL PTRELA Q+ + KY K N+ L GG + Q K Sbjct: 66 NNID---LKLKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIA--LYGGQNYSIQIK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+R +++ TPGRILD N+ L ++ I V+DEAD ML MGFI ++NI Sbjct: 121 SLKRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQ 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT+LFSATM + ++++ F++ PK I + +T I+ + Y K ALL+ Sbjct: 181 HQTILFSATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYG-LCKIEALLRF 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + IIF K + + LEK G++ +++G+++Q R K L+ FK G + Sbjct: 240 L--EVEIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLD 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + V N+D+P E+YIHRIGRTGRAGR GKA V + K + Sbjct: 298 ILVATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKIL 357 Query: 358 DAIEKLIEKKVDWL 371 IE+ I++K+ + Sbjct: 358 YNIERNIKEKLSQI 371 >gi|172058935|ref|YP_001815395.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991456|gb|ACB62378.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum 255-15] Length = 410 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 155/420 (36%), Positives = 243/420 (57%), Gaps = 18/420 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L + + V + G +PTPIQ + IP +L D+ G AQTGTGKT +F+LP I Sbjct: 4 FEALHIQEQWVKKLQKQGIKQPTPIQEQAIPHLLAGRDLIGKAQTGTGKTLAFLLP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121 LE+ + + LI+ PTRELA Q+AD K +N AL + GG Q ++L R Sbjct: 61 LEQIDLESKTVQALIVAPTRELARQIADETHKLIRNMEDIRALAVYGGQDVFKQIQRLGR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGRILDH RG L ++ ++ LV+DEAD+ML +GF+P I++I + P RQ + Sbjct: 121 MPQIIIGTPGRILDHVGRGTLDLSELKTLVLDEADQMLQIGFLPEIEDIIAAAPVDRQFV 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 + SATM ++++++++ +L++P ++V T + IE V T + +K A L+ +L Sbjct: 181 MLSATMPEKVEQLAKTYLRDPIEVQVEAEKVTVDAIEQFVVETTDR--RKQATLRTML-- 236 Query: 242 QDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D M+ IIFC ++ V L L+ QG+ +HG + Q R K ++ F +G + Sbjct: 237 -DEMRPYAAIIFCRTQRRVSKLNEELQMQGYPTDELHGGLTQGKREKAMAKFYQGKTPFL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+A+RGLD+ V HVFN+D+P+ AE+Y+HRIGRTGRAG G A ++V D + Sbjct: 296 IATDVASRGLDVTGVTHVFNYDLPDDAESYVHRIGRTGRAGNDGVAISIVTPRDGRSFRD 355 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 +E+ + +V + +LS +++ AQH+ + K P + G RR N + H Sbjct: 356 MERELGVEVTPIVVELS------DEMIRAQHDQS-KGTKKPAEGRGNTRRSSNRRPGRDH 408 >gi|42781571|ref|NP_978818.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987] gi|42737494|gb|AAS41426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus ATCC 10987] Length = 447 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+++ D+ G A+TGTGKT +FVLP Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ + +K + ++ V + GG Q +KL+ Sbjct: 60 ILEKIDPECSDVQALIVAPTRELALQITNEIKKMLVQRDDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I++ + T TIE + T +K AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQIQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L L+ +G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 Query: 361 EKLI 364 EK + Sbjct: 357 EKTL 360 >gi|261880679|ref|ZP_06007106.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361] gi|270332631|gb|EFA43417.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361] Length = 560 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 140/375 (37%), Positives = 230/375 (61%), Gaps = 12/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ A+ D + TP+Q K IP +L+ D+ G+AQTGTGKTA+++LP+L Sbjct: 1 MKFEELNLSNDILDALYDMNFEDCTPVQEKCIPEILKGRDLMGVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 +++++G +I+ PTRELA Q+ + + Y+L +VA+ G G ++ Sbjct: 61 SMIDEGNYPKNSVNCVIMSPTRELAQQIDQAMQGFA--YHLDTVSSVAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + K + GADV+I TPGR++ H G + + + V+DEADRMLDMGF I I S + Sbjct: 119 EMKSMRLGADVIIATPGRLISHITMGNIDLGKVNFFVLDEADRMLDMGFSDDIMKIASYL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P QT++FSATM ++++K+++N L+NP +++ S AE I+ Y ++K + Sbjct: 179 PKNCQTIMFSATMPNDIEKMAQNLLKNPAEVKLAV-SKPAEKIKQSAYVCYT--TQKIEI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ + ++ D +K IIF K+ V + +L + + +H ++DQ R I+ FK G Sbjct: 236 IKHIFKAGD-LKRVIIFSGSKQKVKQINQALAQLKINSGEMHSDLDQSQRDDIMYKFKSG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+ ARG+DI D+ V N+DVP +E+Y+HRIGRT RA R G A TLV ++D+ Sbjct: 295 QIDVLVATDIVARGIDIDDIAMVINYDVPRDSEDYVHRIGRTARADRDGVAITLVNEDDM 354 Query: 355 KHIDAIEKLIEKKVD 369 IE+ ++K+++ Sbjct: 355 FAFHKIEQFLDKEIE 369 >gi|77166069|ref|YP_344594.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707] gi|76884383|gb|ABA59064.1| ATP-dependent RNA helicase CsdA [Nitrosococcus oceani ATCC 19707] Length = 500 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 214/363 (58%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +S V+ A+ GY PT IQ + IP +L HD+ G AQTGTGKTA+F +P L Sbjct: 8 LSFDSFAISAPVLQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTL 67 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 LE + + P+ L+L PTRELA QVA+ F+ Y + + V + GG Q ++L Sbjct: 68 ERLELSQ---KEPQVLVLVPTRELAIQVAEAFQSYARYLEDFHVLPIYGGQSMGNQLRQL 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RGA V++ TPGRI+DH R L++ + +++DEAD ML MGFI ++ I VP RQ Sbjct: 125 KRGAHVIVGTPGRIMDHLRRKSLILTKLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM ++ ++ LQ P+ I++ +++ I + + K L ++L Sbjct: 185 VALFSATMPTSVRNIASRHLQAPQDIKIKGETASLPAINQRYWLVSGLH--KLDALTRML 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++ IIF K L L +G++ A++G+I Q SR K++ K+ TI ++ Sbjct: 243 EAEE-YDATIIFVRTKIATEELAKKLMARGYAAAALNGDIPQSSREKVVDQLKKNTIDII 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ +GHV N+D+P YIHRIGRTGRAGR G A VA + + + A Sbjct: 302 VATDVAARGLDVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLSA 361 Query: 360 IEK 362 I++ Sbjct: 362 IKR 364 >gi|228933771|ref|ZP_04096617.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825843|gb|EEM71630.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 451 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 223/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T TIE + T +K AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 Query: 361 EKLI 364 EK + Sbjct: 357 EKTL 360 >gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155] gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155] Length = 502 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 215/370 (58%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ ++V A+ + G P IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 8 FAELGVRDEIVRALAENGIEHPFAIQELTLPLALAGDDLIGQARTGMGKTYAFGVPLLHR 67 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY------NLTVALLIGGIPFEA 114 + ++ R PR L++ PTREL QV ++ K+ TV + GG P+E Sbjct: 68 VSSDENRPLTGAPRALVVVPTRELCLQVYNDLAGAAKHLPTNDGRKFTVTSIYGGRPYEP 127 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L +G DV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I L Sbjct: 128 QIEALRKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILQLT 187 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P +RQ +LFSATM D + ++ F+ P I P S A A A K L Sbjct: 188 PDSRQAMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTAQYAYRAHALDKVEL 247 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ ++F K+ + L ++GF V A+HG++ Q +R K L +F+ G Sbjct: 248 VSRILQARGRGAT-MVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFRTG 306 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAG+ G A TLV +++ Sbjct: 307 EIDVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITLVDWDEL 366 Query: 355 KHIDAIEKLI 364 + I+K + Sbjct: 367 ARWEMIDKAL 376 >gi|301056918|ref|YP_003795129.1| ATP-dependent RNA helicase [Bacillus anthracis CI] gi|300379087|gb|ADK07991.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 481 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 220/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A++ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALIGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|293401901|ref|ZP_06646041.1| DEAD/DEAH box family ATP-dependent RNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304559|gb|EFE45808.1| DEAD/DEAH box family ATP-dependent RNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 580 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 139/351 (39%), Positives = 213/351 (60%), Gaps = 9/351 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L +S +++ AV + GY T IQ ++IP +L+ DV G + TGTGKTA+F +P + Sbjct: 4 FNELPISSEIMKAVEEMGYENATDIQAQSIPCILEGKDVLGRSNTGTGKTAAFGIPAIEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 + G + P LI+ PTREL QVA K+ K + + + GG P + Q + L+R Sbjct: 64 VIPGN---KFPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQ 179 G +++ TPGRI+DH NR L + ++ ++++DEAD ML+MGF I+ I S++P Q Sbjct: 121 GCGIVVGTPGRIMDHLNRRTLKLQDVNMIILDEADEMLNMGFKEDIEEILSMMPADNEHQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSAT + K++E F ++P R+E+ + T +T+E + A KK L+ LL Sbjct: 181 TILFSATWPQAILKITEQFQKDPVRVEIKSSQRTIDTVEQIYYE--APRGKKANALRVLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D +IFCN KK V LC L K ++HG++ Q R +++ F+ GT ++ Sbjct: 239 NHYDP-DLCMIFCNTKKMVDELCEELNKHDIKATSLHGDMKQEFRSRVMEQFRNGTSPIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 +A+D+AARG+D+ D+ V NFD+P E YIHR+GRTGRAG+ G A TL++ Sbjct: 298 IATDVAARGIDVDDIDLVVNFDIPQDMEYYIHRVGRTGRAGKKGLAITLIS 348 >gi|32363291|sp|Q88NB7|RHLB_PSEPK RecName: Full=ATP-dependent RNA helicase rhlB gi|24982750|gb|AAN66919.1|AE016320_7 ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440] Length = 398 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS +++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +++ Sbjct: 11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 70 Query: 63 LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L++ + PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 71 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 130 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 131 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 190 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + NP +E+ + +ET+E A S K LL Sbjct: 191 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAG--SDKYKLL 248 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L + G + + G++ Q R++ L +F+EG Sbjct: 249 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 307 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 308 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 367 Query: 356 HIDAIEKLIEKKV 368 + AIE L+ +K+ Sbjct: 368 QLPAIEALLGRKI 380 >gi|297736780|emb|CBI25981.3| unnamed protein product [Vitis vinifera] Length = 347 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 136/335 (40%), Positives = 204/335 (60%), Gaps = 2/335 (0%) Query: 13 VCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVR- 71 + ++ AG+ PTPIQ +T P+ LQ D+ IA+TG+GKT +++P +L + R V+ Sbjct: 3 IASIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRRRRNNVQN 62 Query: 72 MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131 P ++L PTRELA Q+ D K+G++ ++ A L GG AQ K+L+RGADV++ TPG Sbjct: 63 GPTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKELDRGADVVVATPG 122 Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDEL 191 R+ D K+ + I +LV+DEADRMLDMGF P I+ I + +P RQTL+++AT E+ Sbjct: 123 RLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEV 182 Query: 192 QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251 +K++ + L NP ++ + + A +K L+Q+L+SQ+ IIF Sbjct: 183 RKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQILRSQERGSKVIIF 242 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 C+ KK L S+ + F IHG+ Q R +L+ F+ G ++VA+D+AARGLDI Sbjct: 243 CSTKKLCDQLARSIGRN-FGAAVIHGDKSQVERDWVLNQFRSGKSPILVATDVAARGLDI 301 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 D+ V N+D P E+Y+HRIGRTGRAG G A+ Sbjct: 302 KDIRVVINYDFPTGIEDYVHRIGRTGRAGATGWAW 336 >gi|114048765|ref|YP_739315.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-7] gi|113890207|gb|ABI44258.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 479 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 220/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 22 MAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 81 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 82 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 138 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH R +L ++N+ +LV+DEADRML+MGF P + I P RQ Sbjct: 139 EHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 198 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++Q +++ + +P ++V + TIE F ++ AL QLL Sbjct: 199 TLLFSATFPEQIQSIAKQIMYDPVMVKVAV-THEKSTIEQHFYHLDDDKARMQAL--QLL 255 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ ++FCN K+ + L GFSV A+HG+++QR R + L F + ++ Sbjct: 256 LLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVL 315 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + VFN+ V E +IHRIGRTGRAG G AFT +D I Sbjct: 316 VATDVAARGLDIDALDAVFNYHVAFDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIAL 375 Query: 360 IEKLIEKKV 368 +E+ +E+ + Sbjct: 376 LEEYLERDI 384 >gi|127511532|ref|YP_001092729.1| ATP-dependent RNA helicase DbpA [Shewanella loihica PV-4] gi|126636827|gb|ABO22470.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 468 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 155/402 (38%), Positives = 234/402 (58%), Gaps = 10/402 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L+P ++ + G+ + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 13 FDSLPLNPALLDTLKSIGFHQMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGLLNK 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ R R++ TL+L PTRELA QVA + +N+ + L GG+P Q LE Sbjct: 73 LDVKRFRIQ---TLVLCPTRELADQVAAELRTLARGIHNIKILTLCGGVPMGPQIGSLEH 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG+L ++N++ LV+DEADRML+MGF + I VP RQTL Sbjct: 130 GAHIIVGTPGRIIDHLDRGRLDLDNVDTLVLDEADRMLEMGFQRELDAIMQEVPRERQTL 189 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++Q +SE F+ +P ++V E+IE F + AL QLL Sbjct: 190 LFSATFPEQIQGLSEQFMIDPLMVKVEVQHG-GESIEQHFYECGNNNDRMKAL--QLLLL 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN K+ ++ L GFSV A+HG+++QR R ++L F + +MVA Sbjct: 247 KHQPESAVVFCNTKRETKDVAAKLTNAGFSVVALHGDLEQRDRDQMLLKFANKSASVMVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N+ + E +IHRIGRTGRAG G A TL ED + + Sbjct: 307 TDVAARGLDIDALDMVVNYHMAYDTEVHIHRIGRTGRAGSKGAAHTLFNHEDGYKLSLLA 366 Query: 362 KLIEKKVDW--LNGD-LSSLNPPLEKIDIAQHNHARKNNPIP 400 + +++D L G+ L PP ++ Q + +K P Sbjct: 367 DALGREIDGEALPGEALLDTMPPQPRMVTIQIDGGKKQKVRP 408 >gi|291453994|ref|ZP_06593384.1| ATP-dependent RNA helicase [Streptomyces albus J1074] gi|291356943|gb|EFE83845.1| ATP-dependent RNA helicase [Streptomyces albus J1074] Length = 469 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 151/431 (35%), Positives = 238/431 (55%), Gaps = 30/431 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F +LG+ + A+ G P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 4 FRELGILSETAEALEAVGITNPFPIQELTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 63 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRA+ P+ L++ PTREL QV ++ GK ++ V + GG + Sbjct: 64 VTVAADVEAGRAKPEQLTTAPQALVVVPTRELCQQVTNDLLTAGKVRDVRVLAIYGGRAY 123 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L +G DV++ TPGR+LD + KL + +++ LV+DEAD MLD+GF+P ++ I + Sbjct: 124 EPQVEALNKGVDVIVGTPGRLLDLAGQRKLDLGHVKALVLDEADEMLDLGFLPDVERIVT 183 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI----EHCFVATYAQY 228 ++P RQT+LFSATM + ++ ++ P I +P T+ +H F A Sbjct: 184 MLPAKRQTMLFSATMPGAVIGLARRYMTQPTHIRATSPDDEGATVANIAQHVF---RAHS 240 Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 K L+ ++LQ++ +IFC K+ ++ L+++GF+ A+HG++ Q +R + L Sbjct: 241 MDKPELVSRILQAEG-RGLAMIFCRTKRTAADIAEQLQRRGFASGAVHGDLGQGAREQAL 299 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 F+ G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAGR G A TL Sbjct: 300 RAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRAGIAITL 359 Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKST--GF 406 V +DI I K +E + N P+E + H + P K T Sbjct: 360 VDWDDIPRWQLINKALEL----------TFNDPVETYSTSPHLYEELRIPEGTKGTLPRA 409 Query: 407 DRRKKNYSSQK 417 DR + ++++ Sbjct: 410 DRTRAGLAAEE 420 >gi|319937738|ref|ZP_08012141.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1] gi|319807173|gb|EFW03787.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1] Length = 479 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 138/371 (37%), Positives = 221/371 (59%), Gaps = 10/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + ++ A+ GY + T +Q IP + Q DV A+TG+GKTA+F +P+L Sbjct: 1 MKFKELNIDGRIQDALEKLGYSEATEVQSAVIPELKQERDVIVKAKTGSGKTAAFAIPLL 60 Query: 61 --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + E+ + P+ L+L PTRELA QV ++F+ G + + G P++ Q + Sbjct: 61 DSVVWEENK-----PQVLVLTPTRELAIQVKEDFDNIGTYKKIKTLAIFGKQPYKFQTQD 115 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++ V++ TPGRILDH RG ++++ LV+DEAD ML+MGFI ++ I +P R Sbjct: 116 LKQKTHVVVATPGRILDHLQRGTFDASHLKYLVLDEADEMLNMGFIETVEKIIEKLPVKR 175 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ +E++K++ F++NP ++ + + IE + Y K LL+ + Sbjct: 176 TTCLFSATLPEEIKKLAAKFMKNPVQVNIKQSQVINQKIE-TYAYEVMSYEKAGFLLKLI 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + + IIFC ++ V + L K G SV IHG + Q R++ +++F+ G +Q Sbjct: 235 VHEKPS--SAIIFCETQERVNEVYDMLYKNGISVHKIHGGMLQTDRLENMNDFRLGKVQF 292 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI ++ HV N+D+P A+NYIHRIGRT R G+ G A +L++K+D K Sbjct: 293 LVATDVAARGIDIENISHVINYDLPREAQNYIHRIGRTARIGKAGIAISLLSKDDYKRRM 352 Query: 359 AIEKLIEKKVD 369 IE E D Sbjct: 353 CIEDYTETSFD 363 >gi|119510101|ref|ZP_01629241.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414] gi|119465288|gb|EAW46185.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414] Length = 500 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 215/362 (59%), Gaps = 5/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS K V + + G+ PT IQ + IP +L DV G +QTGTGKTA+F LP+L Sbjct: 3 LSFQELGLSQKRVEQLENIGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ V+ L+L PTRELA QV D ++ + L + + GG E Q +L+ Sbjct: 63 EQLDVNHKAVQ---ALVLAPTRELAIQVHDAINQFVGDEGLRILAIYGGQSIERQMMQLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D +RG L ++ ++ V+DEAD ML MGFI + I S P RQT Sbjct: 120 RGVHMVVGTPGRMIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPKERQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++ + FL+NP + V P ++ I ++K A LQ +L+ Sbjct: 180 ALFSATMPPSIRMIVNKFLRNPATVTVEQPKASPNKINQVAYLIPRHWTKAKA-LQPILE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + +IF ++ L + L+ G SV HG++ Q++R ++L+ F+ ++ +V Sbjct: 239 MEDP-ETALIFVRTRRTAAELTNLLQGAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV NFD+P+ AE Y+HRIGRTGRAG+ G A +LV + + A Sbjct: 298 ATDIAARGLDVDLLSHVINFDLPDSAETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 357 Query: 361 EK 362 E+ Sbjct: 358 ER 359 >gi|170758353|ref|YP_001787402.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str. Loch Maree] gi|169405342|gb|ACA53753.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A3 str. Loch Maree] Length = 376 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 222/368 (60%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS ++ + + ++PTPIQ ++I L+ +DV AQTGTGKT +F+LPM Sbjct: 2 IKFEELGLSDSIIDILKNQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + LI+ PTRELA Q+ + K K +L + GG +Q KKL+ Sbjct: 62 ---ENISPNINAIQGLIITPTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR+LDH NR L +++ LV+DEAD ML MGF +++I P RQT Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIENTPRKRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++ +++PK I + T + I+ + T + +K L ++L Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILN 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ IIFC K+ V NL L K+G++ +HG++ Q R +I+ +FK IQ ++ Sbjct: 237 EENPFM-AIIFCRTKRRVDNLEEDLYKKGYNCEKLHGSMTQPKRERIMRSFKNLEIQYLI 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HVFN+D+P +E+YIHRIGRTGRAG G F VA +D + +D I Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENSESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLDMI 355 Query: 361 EKLIEKKV 368 EK I+ K+ Sbjct: 356 EKEIKFKI 363 >gi|71734815|ref|YP_276470.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555368|gb|AAZ34579.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 450 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 9 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 68 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 69 QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 128 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 129 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 188 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 189 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 247 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 306 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 365 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 366 AIEVLTRQTLE 376 >gi|91200410|emb|CAJ73457.1| strongly similar to ATP-dependent RNA helicase [Candidatus Kuenenia stuttgartiensis] Length = 524 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 143/365 (39%), Positives = 219/365 (60%), Gaps = 15/365 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F LGLS + + + GY +PTPIQ KTIP +L D+ G AQTGTGKTA+F LP+L Sbjct: 4 FESLGLSESTLKVLKEKGYEEPTPIQQKTIPAILSGTKDIVGQAQTGTGKTAAFGLPVLE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L + V+ L+L PTRELA QVA+ L++ + G E Q + L++ Sbjct: 64 LLPEKSKNVQ---ALVLTPTRELAIQVAEELNSLKGKKRLSIVPIYGRQSMELQLRSLKK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR+LDH RG L + I LV+DEAD ML+MGFI ++ I ++TL Sbjct: 121 GIDIVVGTPGRVLDHLKRGTLKIGKISFLVLDEADEMLNMGFIDDVREIMENTGHEKRTL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA--QYSKKCALLQQLL 239 LFSATM E+ ++++N++++ +VN T + + +A ++ C ++ Sbjct: 181 LFSATMPFEIMQIAKNYMRDFDVQKVNAGQLTVSQTDQIYFEVFAADKFEALCRII---- 236 Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 D K+ G++FC K +V + L ++G+ A+HG+I Q R KIL+ FK+ I Sbjct: 237 ---DIEKDFYGLVFCRTKIDVDAVASHLIERGYDADALHGDISQSLREKILAKFKKRQIN 293 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARGLDI ++ HV N+ +P E+Y+HRIGRTGRAG+ G A T + E+ + + Sbjct: 294 ILIATDVAARGLDIHNLSHVINYSLPQDPESYVHRIGRTGRAGKGGIAITFITPEEYRKL 353 Query: 358 DAIEK 362 I+K Sbjct: 354 QFIQK 358 >gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300] Length = 507 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 145/384 (37%), Positives = 224/384 (58%), Gaps = 17/384 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F DLG+S K + + G+ +PTPIQ +IP L D+ G AQTGTGKT +F +P++ Sbjct: 4 FKDLGVSDKTAETLGNMGFEEPTPIQTDSIPYALHGLDILGQAQTGTGKTGAFGIPLIEK 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++K + LIL PTRELA QVA+ + + + VA + GG+P Q K L++ Sbjct: 64 VVDKEGVQA-----LILAPTRELAMQVAEQLRAFSRGQRVQVATVFGGMPIGRQIKALKK 118 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 G +++ TPGR++DH NR L ++I+ L+IDEAD M++MGFI ++ I +P RQT Sbjct: 119 GPQIVVGTPGRVIDHLNRRTLKTDDIKTLIIDEADEMMNMGFIDDMRFIMDHLPSEDRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +Q + + F+++PK ++ + I+ + T + +K L Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPKIVKTMNNEMSDPQIDEYY--TIVKELEKFETFTNFLD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+F K+ V L +L +G+ +HG+I Q R+++L FK I ++V Sbjct: 237 VHQP-ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILV 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I I Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMDYIRQI 355 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E+ +++ + +L PP K Sbjct: 356 EQTNDRR-------MRALRPPHRK 372 >gi|228915063|ref|ZP_04078662.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844597|gb|EEM89649.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 447 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 60 ILEKIDPECGDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 Query: 361 EKLI 364 EK + Sbjct: 357 EKTL 360 >gi|313672966|ref|YP_004051077.1| dead/deah box helicase domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939722|gb|ADR18914.1| DEAD/DEAH box helicase domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 528 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 141/358 (39%), Positives = 214/358 (59%), Gaps = 11/358 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LGLS V+ A+ G+ +PTPIQ IP +LQ D+ G AQTGTGKTA+F LP++ Sbjct: 7 FKELGLSENVLKALSKKGFEEPTPIQELVIPKLLQGERDIVGQAQTGTGKTAAFGLPLIE 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ V+ ++L PTRELA QVA+ L + + GG E Q ++LE Sbjct: 67 LLDDKSPFVQ---AIVLTPTRELALQVAEEMNSLKGKKRLNIVPIYGGQSMELQLRRLEN 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 A +++ TPGR++DH NR L +N ++ +V+DEAD ML+MGFI I+ I ++ L Sbjct: 124 NAHIVVGTPGRVIDHINRKTLRLNKLKFMVLDEADEMLNMGFIEDIEEIIKHTNEDKRML 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E+ +++ ++++ + + V T T E E + + + L + Sbjct: 184 LFSATMPKEILNIAKKYMKDYEVLAVKTKQLTTELTEQIYFQVREEDK-----FEALCRI 238 Query: 242 QDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +D K G+IFC K +V +C+ L +G++ A+HG+I Q R +IL FK I ++ Sbjct: 239 RDMEKEFYGLIFCRTKVDVDTVCNRLIDRGYNAEALHGDISQYQRERILKRFKAKQINML 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 VA+D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T V E+ + + Sbjct: 299 VATDVAARGIDISDLTHVINYSLPQDPESYVHRIGRTGRAGKEGTAITFVTPEEYRKL 356 >gi|229087937|ref|ZP_04220048.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44] gi|228695405|gb|EEL48279.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44] Length = 481 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 133/365 (36%), Positives = 223/365 (61%), Gaps = 10/365 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F + LS +++ A+ Y +PT +Q K IP+ L+R D+ +QTG+GKTASF +P+ Sbjct: 5 NFKEYALSGEIIRALTSLKYEQPTEVQGKVIPIALERKDLVVKSQTGSGKTASFGIPLCE 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++E + P+ LIL PTRELAAQV ++ G+ + + G PF Q +L++ Sbjct: 65 MVEWEENK---PQALILTPTRELAAQVKEDITNIGRFKRIKATAIYGKSPFARQKLELKQ 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR+LDH +G + ++ LVIDEAD ML+MGFI ++ I +P R T+ Sbjct: 122 KTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTM 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--L 239 LFSAT+ ++++ +S ++++P IE+ T + IEH + + +K +LL+ + + Sbjct: 182 LFSATLPEDVENLSRTYMESPINIEITASGITTDKIEHRILEVREE--EKFSLLKDITTV 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +S D+ IIFC ++NV ++ L++ + +HG + Q R ++++FK G + + Sbjct: 240 ESPDSC---IIFCRTQENVDHVFRQLKRSSYPCDKLHGGMIQEDRFAVMNDFKRGKFRYL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + + Sbjct: 297 VATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLAE 356 Query: 360 IEKLI 364 IE+ I Sbjct: 357 IEEYI 361 >gi|42784637|ref|NP_981884.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987] gi|42740569|gb|AAS44492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus ATCC 10987] Length = 481 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 221/362 (61%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH A +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFE--AIEDEKFSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain protein [Leadbetterella byssophila DSM 17132] gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila DSM 17132] Length = 619 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 152/411 (36%), Positives = 238/411 (57%), Gaps = 20/411 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F++L +S +V AV + G+ + TPIQ IP+V+ DV G AQTGTGKTA+F +P + Sbjct: 68 LKFSELPISDYIVKAVEEMGFTESTPIQTAAIPVVMSGRDVIGQAQTGTGKTAAFGIPAI 127 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNF---EKYGKNYNLTVALLIGGIPFEAQNK 117 E A R + LIL PTRELA QV + KY K L V+ + GG +E Q Sbjct: 128 ---EHVNAEDRNTQVLILCPTRELALQVKEQLTLLAKYKKG--LLVSAIYGGESYERQFA 182 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+RG +++ TPGRI+DH + L ++NI ++++DEAD ML+MGF I+ I S Sbjct: 183 NLKRGTQIVVGTPGRIMDHIEKKTLKLDNISMVILDEADEMLNMGFREDIEQILSFAKED 242 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSATM+ E+ +++ F +P+ ++V T IE + + K L+ + Sbjct: 243 RQTVLFSATMSKEILNITKKFQNDPEIVKVTRKEITNTNIEQSYY--LVKKEAKFELMVR 300 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ D ++ ++FCN K V + L+ G++ +HG++ Q +R ++++ F+ G + Sbjct: 301 LIDVHD-LQLMLVFCNTKSKVDEIVEELQANGYAAEGLHGDMRQAARNQVMNKFRNGNTK 359 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ V V N+D+P E Y+HRIGRTGRAG+ GKAF + K D + Sbjct: 360 ILVATDVAARGIDVSGVDAVINYDLPMDLEYYVHRIGRTGRAGKLGKAFLFITKRDRSRM 419 Query: 358 DAIEKLIEKKVDW----LNGDL--SSLNPPLEKIDIAQHNHARKNNPIPQK 402 +E+ + + + DL S +N +EKI + N NP +K Sbjct: 420 RDLEQYTKVAIPQGKIPTSADLEKSRINKFVEKI---RENIVEDTNPAFEK 467 >gi|298488858|ref|ZP_07006883.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156611|gb|EFH97706.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 442 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|23308803|ref|NP_599999.2| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|62389660|ref|YP_225062.1| ATP-dependent RNA helicase protein [Corynebacterium glutamicum ATCC 13032] gi|21323537|dbj|BAB98164.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] gi|41324995|emb|CAF19476.1| PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 424 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 152/408 (37%), Positives = 222/408 (54%), Gaps = 22/408 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LG++ ++ A+ G + IQ T+P+ L HD G A+TG GKT F +P+L Sbjct: 10 FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDR 69 Query: 62 ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + PR L++ PTRELA QV D+ ++ N L + GG P+E Q L Sbjct: 70 VFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDAL 129 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G DV++ TPGR+LD RG L ++ + ILV+DEAD MLD+GF+P I+ I + Q Sbjct: 130 KVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQ 189 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++ +FL P I T ++A V A K A+ ++L Sbjct: 190 TMLFSATMPGAILTLARSFLNKPVHIRAETSDASATHKTTRQVVFQAHKMDKEAITAKIL 249 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 QS+D K IIF K+ + L +GFSV ++HG++ Q +R K L+ F+ G I ++ Sbjct: 250 QSKDRGKT-IIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDIL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV HV N+ P+ Y+HRIGRTGRAG +G A TLV ++ Sbjct: 309 VATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLVGYDETLKWTV 368 Query: 360 IEKLIEKKVDWLNGDLSSLNPP---------LEKIDIAQHNHARKNNP 398 I+ +E L NPP LE +DI + R P Sbjct: 369 IDNELE---------LGQPNPPQWFSTSPELLETLDIPEGVTERVGPP 407 >gi|120598331|ref|YP_962905.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|120558424|gb|ABM24351.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] Length = 427 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 145/365 (39%), Positives = 210/365 (57%), Gaps = 10/365 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++ + + YV PTP+Q TIP VL DV A TG+GKTA+F +P+L Sbjct: 11 FAQLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQ 70 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117 L + + R L+L PTRELA QVAD+F Y + N L + GG+ AQ + Sbjct: 71 LVDAKTEDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQ 130 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADVL+ TPGR+LD + + +N + LV+DEADRML +GF + + +P Sbjct: 131 SLRSGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAK 190 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSAT +E+++++ L NP ++ S E+ H V T + K ALL Sbjct: 191 KQTLLFSATFPEEVRELTAKLLNNPLEYQLQ---SEQESTIHQRVITVNR-PMKTALLAH 246 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ + +IF + K +L L K+G + HG+ Q +R ++L FK G I Sbjct: 247 LIK-EHQWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEIS 305 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ ED H Sbjct: 306 VLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHF 365 Query: 358 DAIEK 362 IEK Sbjct: 366 GVIEK 370 >gi|146300157|ref|YP_001194748.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium johnsoniae UW101] gi|146154575|gb|ABQ05429.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae UW101] Length = 634 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 228/371 (61%), Gaps = 12/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F LGL+ ++ A+LD G+ P+ +Q K IPL+L++ D+ +AQTGTGKTA+F P++ Sbjct: 4 FEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++ A R + L+L PTREL Q+ + N+ KY K N V + GG Q ++ Sbjct: 64 KID---ADNRNTQALVLSPTRELCLQITNELKNYSKYEKGIN--VVAVYGGASITEQARE 118 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++RGA +++ TPGR+ D NRG + + NI+ ++DEAD ML+MGF I +I S P + Sbjct: 119 IKRGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQK 178 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATM E+ ++++ F+ P I V +S + T+ H F A+ + L++L Sbjct: 179 NTWLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNAR--DRYEALKRL 236 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++FC K++ + L + G+S A+HG++ Q R ++ +F+ IQ+ Sbjct: 237 ADANPDIFS-VVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQM 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ +V HV N+ +P+ E Y HR GRTGRAG+ G + +V K +++ I Sbjct: 296 LVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKIS 355 Query: 359 AIEKLIEKKVD 369 +IE++I++K + Sbjct: 356 SIERIIKQKFE 366 >gi|330987668|gb|EGH85771.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 442 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|150400366|ref|YP_001324133.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus vannielii SB] gi|150013069|gb|ABR55521.1| DEAD/DEAH box helicase domain protein [Methanococcus vannielii SB] Length = 538 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 222/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LGLS ++ A+ G+ +PTPIQ K IP++++ D+ G AQTGTGKTA+F LP++ Sbjct: 4 FRNLGLSEDIINALEKKGFTEPTPIQEKAIPILIKGEMDIVGQAQTGTGKTAAFGLPIIE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ R + LIL PTRELA QVA+ + + L + + GG + Q K+L+R Sbjct: 64 TID---TNSRNTQALILTPTRELAIQVAEEIDSLKGSRRLNIFPVYGGQSIDRQIKELKR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGRILDH +R + + N+ +V+DEAD ML+MGFI ++ I V ++ L Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVNTEKRML 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ D + K++EN++++ + I+V T + F + K LL +++ + Sbjct: 181 LFSATLPDSIMKLAENYMRDYETIKVKKQQLTTNLTDQSFYEISPR--DKFELLSRIMDT 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + G+IFC K +V +L L ++G+ +HG++ Q R K L FK ++VA Sbjct: 239 EKEF-YGLIFCKTKADVDDLSARLVERGYPAEGLHGDMTQAQREKTLDKFKRRRTTVLVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI ++ HV N+D+P E+Y+HRIGRTGRAG+ G A T V + + I Sbjct: 298 TDVAARGIDINELTHVVNYDLPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIL 357 Query: 362 KLIEKKV 368 K+ + ++ Sbjct: 358 KIAKTEI 364 >gi|108760847|ref|YP_634735.1| ATP-dependent RNA helicase DbpA [Myxococcus xanthus DK 1622] gi|108464727|gb|ABF89912.1| ATP-independent RNA helicase DbpA [Myxococcus xanthus DK 1622] Length = 461 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 147/379 (38%), Positives = 229/379 (60%), Gaps = 10/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF+ L LSP ++ + + + TPIQ ++IP++LQ D+ G AQTG+GKTA+F LP+L Sbjct: 1 MDFSALALSPPLLQVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 +K + + R + L+L PTREL AQVA + G+ L V +L GG P Q + L Sbjct: 61 ---QKVQLQHRKVQALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEAL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+GA + + TPGR++D +R L + +V+DEADRMLDMGF ++ I +P RQ Sbjct: 118 EKGAHLAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSAT +++ +S +F + P R+ V ++ + + V + K ALL ++L Sbjct: 178 TVLFSATFPPDIEALSRDFQRQPVRVTVEAATAGPDIQQ---VRYDCEPGDKQALLLRIL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + I+FCN K VV L SL G SV + G+++Q R ++++ F+ + +++ Sbjct: 235 RHYQP-ASAIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+A RG+D+ + V NFD+P +AE Y+HRIGRTGRAGR G A ++V D + +D Sbjct: 294 IATDVAGRGIDVEALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIVTPRDGRKVDD 353 Query: 360 IEKLIEKKVDWLNGDLSSL 378 I+ + V GD+ SL Sbjct: 354 IQ--LATGVKLERGDVESL 370 >gi|257482171|ref|ZP_05636212.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 442 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|254482880|ref|ZP_05096117.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214036961|gb|EEB77631.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 465 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 147/391 (37%), Positives = 224/391 (57%), Gaps = 23/391 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL +++ V D G+ +PIQ + +P LQ HD G AQTGTGKTA+F ++TI Sbjct: 85 FHDLGLRDELMHGVADLGFQYSSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAF---LITI 141 Query: 63 LE-------KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +G V PR L++ PTREL Q+A + GK+ L VA LIGG+ ++ Q Sbjct: 142 FNDQLCHPIEGERFVGEPRALVIAPTRELVMQIAADAADLGKHTGLQVATLIGGMDYQKQ 201 Query: 116 NKKLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 +L+R D+++ TPGR+LD R L ++++E+LV+DEADRMLDMGFIP ++ I Sbjct: 202 LNRLQRDVIDLVVATPGRLLDFMGRRDLFLDHVEVLVLDEADRMLDMGFIPQVKRIVRAC 261 Query: 175 PF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 P +RQTLLFSAT T ++ +S+ + P +E+ S +T++ ++ ++ Sbjct: 262 PRKESRQTLLFSATFTQDIINLSQQWTYEPVTVEIEPDSVATDTVDQKIYMVSSE--QRF 319 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 +L L++S D + I+F N++ V L L K G + G I Q R + L FK Sbjct: 320 RVLNNLVRSDDC-SSVIVFANRRDQVRRLHERLRKAGVKCGVLSGEIPQAKRTRTLEQFK 378 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I ++VA+D+A RG+ + + HV N+++P E+Y+HRIGRTGRAG G + + +++ Sbjct: 379 NGEITVLVATDVAGRGIHVDGISHVVNYNLPEDPEDYVHRIGRTGRAGATGTSISFASED 438 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383 D + +E L L L +PP E Sbjct: 439 DAFLLPDLEAL-------LGAPLECTHPPAE 462 >gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus] Length = 435 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 7/368 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 D+ LGL + + + +PT IQ + IPLVL+ DV G+A+TG+GKTA+F LP+L Sbjct: 3 DWKALGLVDTLCTTCIQLKWNEPTKIQREAIPLVLEGKDVIGLAETGSGKTAAFALPILQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R LIL PTRELA Q+++ FE G + + A+++GG+ AQ LE+ Sbjct: 63 ALLENPQRYF---ALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEK 119 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + I+ L++DEADR+L+M F + I ++P R+T Sbjct: 120 KPHIIIATPGRLVDHLENTKGFNLRQIKFLIMDEADRILNMDFEVEVNKILRVMPRERRT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATMT ++QK+ L+NP ++EV+T T E ++ ++ ++ K L+ L Sbjct: 180 LLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKF-KDVYLVHIL-- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ N +IFC N V L GF+ +HG + Q R+ L+ F+ +++ Sbjct: 237 NELAGNNFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR G++ T + + D++ I Sbjct: 297 STDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFITQYDVELYQRI 356 Query: 361 EKLIEKKV 368 E+LI K++ Sbjct: 357 EQLISKQL 364 >gi|296329829|ref|ZP_06872313.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676555|ref|YP_003868227.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii str. W23] gi|296152868|gb|EFG93733.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414799|gb|ADM39918.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii str. W23] Length = 479 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 218/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + +S ++ A+ GY +PT +Q IP L+R D+ +QTG+GKTASF +P+ + Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + P+ LIL PTRELA QV ++ G+ + + G F+ Q +L++ Sbjct: 64 ADWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATSVFGKSSFDKQKAELKQK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 + +++ TPGR+LDH +G L ++ + LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 121 SHMVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++QNP+ IE+ T + IEH + + K +LL+ +L ++ Sbjct: 181 FSATLPEDIEKLSRQYMQNPQHIEIKAAGLTTKNIEHAVIQVREE--NKFSLLKDVLMTE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC K++V L L+ G+ IHG + Q R +++ FK G + +VA+ Sbjct: 239 NP-DSSIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ V N+D+P E+Y+HR GRTGRAG GKA + V + + + IE+ Sbjct: 298 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357 Query: 363 LI 364 I Sbjct: 358 YI 359 >gi|293331893|ref|NP_001169380.1| hypothetical protein LOC100383248 [Zea mays] gi|224029005|gb|ACN33578.1| unknown [Zea mays] Length = 498 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 134/351 (38%), Positives = 213/351 (60%), Gaps = 8/351 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G +++ + AG+ PTPIQ ++ P+ +Q DV IA+TG+GKT ++LP Sbjct: 152 FEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAMQNQDVVAIAKTGSGKTLGYLLPGFMH 211 Query: 63 LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ + R P L+L PTRELA Q+ D K+G++ ++ L GG P Q + L+R Sbjct: 212 IKRLQNSTRNGPTVLVLAPTRELATQILDEAVKFGRSSRISCTCLYGGAPKGPQLRDLDR 271 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR+ D K+ + + LV+DEADRMLDMGF P I+ I +P RQTL Sbjct: 272 GVDVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPHRRQTL 331 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS---TAETIEHCFVATYAQYSKKCALLQQL 238 +++AT E+++++++ L +P ++ + + S + +H + T ++ ++ L+Q+ Sbjct: 332 MYTATWPKEVRRIADDLLVHPVQVTIGSVDSLVANSSITQHVEIITPSEKQRR---LEQI 388 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+SQD+ +IFC K+ L +L +Q F AIHG+ Q R K+L+ F+ G + Sbjct: 389 LRSQDSGSKILIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLNQFRSGRSPI 447 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+ + Sbjct: 448 LVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYIFL 498 >gi|317477978|ref|ZP_07937161.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] gi|316905892|gb|EFV27663.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] Length = 650 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 227/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY +P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K R+P++LIL PTREL Q+A + Y K + L V + GG E+Q + L+ Sbjct: 63 --QKINVNNRIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIESQIRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + + I+ +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+ +L++ K I + + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior] Length = 448 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 220/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + DLGL + LD + +PT IQ + IPL LQ DV G+A+TG+GKTA+F LP+L Sbjct: 20 WKDLGLVDILCKTCLDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQA 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + R LIL PTRELA Q+++ F+ G + + +L+GG+ AQ LE+ Sbjct: 80 LLENPQRYF---ALILTPTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEKK 136 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+TL Sbjct: 137 PHIIIATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTL 196 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT ++QK+ L+NP ++EV+T T E ++ ++ ++ K L+ L + Sbjct: 197 LFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKF-KDVYLVHIL--N 253 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + +IFC N V L GF+ +HG + Q R+ L+ FK ++++ Sbjct: 254 ELAGNSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILIS 313 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR G++ T V + D++ IE Sbjct: 314 TDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIE 373 Query: 362 KLIEKKV 368 +LI K++ Sbjct: 374 QLISKQL 380 >gi|325287711|ref|YP_004263501.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323165|gb|ADY30630.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM 7489] Length = 450 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 150/403 (37%), Positives = 235/403 (58%), Gaps = 15/403 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L ++ A+ D G+ PTPIQ + P+V+ D+ GIAQTGTGKT +++LP+L Sbjct: 4 FSDFNLKKQLHYAIDDLGFTTPTPIQKEAFPVVMSGKDMIGIAQTGTGKTFAYMLPILQD 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L ++ + PR LIL PTREL QV + + K N+ V + GG Q + + +G Sbjct: 64 L--AFSKQKNPRVLILVPTRELVLQVVEQINSFAKYINVRVMGVYGGTNMNTQAQAVSQG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +D+++ TPGR+ D L + +I+ LVIDE D MLD+GF I NI L+P RQ ++ Sbjct: 122 SDIIVATPGRLYDLVLARALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPTRRQNIM 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATMTD+++ + +F NP+++ + + + I A Y+ K LL LL+ + Sbjct: 182 FSATMTDDVETLINDFFINPEKVSIAVSGTPLDNISQTCYAVPNFYT-KANLLVHLLKDK 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFS--VCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +T K ++F K+ L +SLE + FS +C IH N Q R++ ++ F EG +++V Sbjct: 241 ETYKKVLVFVANKRFADRLFNSLE-EIFSDELCVIHSNKTQNYRIRSINQFDEGINRILV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+ ARGLD+ + HV NFD P ENY+HRIGRTGRA G + +++ ++ DAI Sbjct: 300 TTDVMARGLDLDKISHVINFDTPTFPENYMHRIGRTGRAEEQGNSILFYTEKEEEYKDAI 359 Query: 361 EKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHNHARKNNPI 399 E+L++ K+ + + ++S P E+ I +H +NPI Sbjct: 360 EELMDYKIPTITIPESVEISKELIPEERPKILEH-----HNPI 397 >gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S] gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] Length = 545 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 160/440 (36%), Positives = 241/440 (54%), Gaps = 28/440 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F +LG+ ++V A+ + G + IQ T+PL L D+ G A+TG GKT F +P+L Sbjct: 43 FGELGVRDEIVKALAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGIPLLHR 102 Query: 61 -TILEKGRARVR-MPRTLILEPTRELAAQVADNFE---KYGKN--YNLTVALLIGGIPFE 113 + + G + PR L++ PTREL QV + E KY K+ L V + GG P+E Sbjct: 103 VSTADSGTTPLDGTPRALVIVPTRELCVQVTQDLENASKYLKSGEKKLEVLSIYGGRPYE 162 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L +G DV++ TPGR+LD N+G L++ + +LV+DEAD MLD+GF+P I+ I + Sbjct: 163 QQIDALRKGVDVVVGTPGRLLDLANQGHLILGKVGVLVLDEADEMLDLGFLPDIERILGM 222 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVATYAQYSK 230 VP RQT+LFSATM + ++ FL P I S+A T +H + A Sbjct: 223 VPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEEADSSAVHERTTQHIY---RAHALD 279 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K ++ ++LQ+ D +IF K+ + L ++GF+V A+HG++ Q +R K L+ Sbjct: 280 KAEMVARVLQA-DGRGATMIFTRTKRTAQKVADDLNERGFNVGAVHGDLGQIAREKALAG 338 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 F+ G + ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G A TLV Sbjct: 339 FRSGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAITLVD 398 Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 +D+ I+K + V P+E + H + ++ IP + G R+ Sbjct: 399 WDDVPRWQLIDKALALGV----------PDPVETYSSSPHLY--EDLGIPTDAKGSIRKP 446 Query: 411 KNYSSQKSHIPLKESEKISK 430 + K H +EK K Sbjct: 447 RAERPAKEHKDAPAAEKSEK 466 >gi|242093508|ref|XP_002437244.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor] gi|241915467|gb|EER88611.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor] Length = 567 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 154/402 (38%), Positives = 223/402 (55%), Gaps = 35/402 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ V+ V GY PTP+Q +P+V+ D+ AQTG+GKTA+F LP+++ Sbjct: 58 FEAAGLAEAVLRNVARCGYDNPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSG 117 Query: 63 L----------------EKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL 105 L ++G RV PR L+L PTRELAAQ+ + K+ L V + Sbjct: 118 LVVPPAGGGSGYGYGRRDRGSFDRVAKPRALVLAPTRELAAQINEEARKFSFQTGLRVVV 177 Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165 GG P Q + LERG D+L+ TPGR++D R ++ + I+ LV+DEADRMLDMGF P Sbjct: 178 AYGGTPMYNQLRDLERGVDLLVATPGRLVDMVERSRISLEGIKYLVMDEADRMLDMGFEP 237 Query: 166 YIQNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221 I+ I ++ RQT+LFSAT E+Q+++ +FL N + V S+ + IE Sbjct: 238 QIRKIVDMMNMPKKSVRQTMLFSATFPPEIQRLASDFLYNYIFVTVGRVGSSTDLIEQKL 297 Query: 222 VATYAQYSKKCALLQQLLQSQDT-MKNG-------IIFCNQKKNVVNLCHSLEKQGFSVC 273 + +K L LLQ Q + N ++F K+ +L + L+ +GF Sbjct: 298 --EFVNDGEKRGFLIDLLQKQSAGVANSKLQQPLTLVFVETKREADSLRYFLQSKGFPAT 355 Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333 AIHG+ Q+ R L +FK GT +MVA+D+A+RGLD+P+V HV N+D+P E+Y+HRI Sbjct: 356 AIHGDRTQQERESALKSFKSGTTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRI 415 Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDA-IEKLIEKKVD---WL 371 GRTGRAG+ G A + + +E + E K D WL Sbjct: 416 GRTGRAGKAGIATAFFTESNHPLAKGLLELMTEAKRDVPEWL 457 >gi|119776347|ref|YP_929087.1| ATP-dependent RNA helicase RhlB [Shewanella amazonensis SB2B] gi|189040038|sp|A1SAL1|RHLB_SHEAM RecName: Full=ATP-dependent RNA helicase rhlB gi|119768847|gb|ABM01418.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis SB2B] Length = 439 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 151/401 (37%), Positives = 240/401 (59%), Gaps = 13/401 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADL L +V A+ + G+ TPIQ ++P++L++ D+ G AQTGTGKT +F++ Sbjct: 11 FADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKTLAFLVATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT ++ PR +++ PTRELA Q+A + K+ L V ++ GG +EAQ K Sbjct: 71 LLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKDATLLSKHSGLKVGIVYGGEGYEAQRKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G DVLI T GRI+D+ +G + + I+ +V+DEADRM D+GFI I+ + + +P + Sbjct: 131 LDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIRFLFNRMPGAK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 + L LFSAT++ ++Q+++ + + +P ++E+ T+ I E F Y K LL Sbjct: 191 ERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIF---YPSMEDKLKLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ +D + I+F N K NL SLE G V + G++ Q+ R+KIL F + Sbjct: 248 HSLIE-EDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQSE 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG+ G + + +E Sbjct: 307 LDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYAL 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL--NPPLEKIDIAQHNHAR 394 ++ AIE I+ + + D +L PP KI H R Sbjct: 367 NLPAIEDYIKHSIPVTSYDRDALIDIPPPVKIHRKPHAGGR 407 >gi|328956797|ref|YP_004374183.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4] gi|328673121|gb|AEB29167.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4] Length = 423 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 223/369 (60%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ ++ A+ +AGY K TPIQ IP ++ D+ G AQTGTGKTA+F LP+L Sbjct: 1 MLFNELELNQHLLHALKEAGYTKATPIQEDAIPHLMNNKDLLGCAQTGTGKTAAFALPIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I+E+ + LIL PTRELA Q+ D+F+ Y K L + ++ GG+ Q L Sbjct: 61 QNIMEEKTIGKGAIKALILAPTRELAIQIGDSFQTYAKYLPLNIQVIFGGVSQNPQTATL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG D+L+ TPGR+LD +G + +N ++ V+DEAD MLDMG + +++I +P RQ Sbjct: 121 KRGTDILVATPGRLLDLIRQGFVKLNQVDFFVLDEADMMLDMGMLRDVRHIIRELPKKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 ++ FSATM E++K++ L NP ++ VN SST E I+ + K LL LL Sbjct: 181 SMFFSATMPSEIEKLAGTILSNPVKVVVNPVSSTVEVIQQNVYRVAK--TDKTNLLIYLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ ++ ++F K + L + GFS AIHGN Q +R + L NFK ++ Sbjct: 239 KNKQ-VERSLVFSRTKHGANKIVKKLLQAGFSAEAIHGNKSQNARQQALENFKTMKTSVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P++ V FD+P E Y+HRIGRTGRAG GKA + + + + Sbjct: 298 VATDIAARGIDVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAISFCDETESDLLRD 357 Query: 360 IEKLIEKKV 368 IEKL ++KV Sbjct: 358 IEKLSKRKV 366 >gi|228997517|ref|ZP_04157133.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17] gi|228762256|gb|EEM11186.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17] Length = 433 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 223/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+V+ D+ G A+TGTGKT +FVLP+L Sbjct: 3 NFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ EK N+ V + GG Q +KL+ Sbjct: 63 KIDPESSDVQ---ALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R ++++N+ +LV+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ +++ P+ I++ + T I+ + T +K+ AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQRVIET-TDRAKQDALRHVMDR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + +IFC K+ L L+ G++ +HG++ Q R +++ +F++ IQ ++ Sbjct: 239 DQPFL--AVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D ++ I Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGESGLAITFVAPKDEMYLKEI 356 Query: 361 EKLI 364 EK I Sbjct: 357 EKGI 360 >gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] Length = 500 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 215/369 (58%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LG+S ++ + G +PTP+Q K IPLVL DV AQTGTGKT +F LP+L Sbjct: 5 FSTLGVSQELTSVLSSYGITEPTPVQHKAIPLVLNGADVIVQAQTGTGKTLAFALPILER 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + + LIL PTRELA Q+ K K + GG E+Q +KL Sbjct: 65 IDTTKNHTQ---ALILTPTRELAIQITTELNKLAKTVGANILAAYGGQDVESQIRKLRNS 121 Query: 123 -ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 ++I TPGR+LDH R + + I +LV+DEAD+ML MGF+P ++ I S +P RQT Sbjct: 122 WPHIVIATPGRLLDHLRRETIRLGKIRMLVLDEADQMLHMGFLPDVETIVSSMPRQHRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+ ++ P + + T + I + T K+ L++ + + Sbjct: 182 MLFSATMPAQIRKLGAEYMNGPTDVNITPEKVTVDKIRQVAIET-TDRRKEDTLVELIGK 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + ++FC K L +L+++G S +HG++ Q R +++ F++ +Q+++ Sbjct: 241 YQPYL--AVVFCRTKVRAKKLNEALQERGISSDELHGDLSQAKREQVMKRFRQARLQVLI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+DVP E Y+HRIGRTGRAG G A TLV+ DI + I Sbjct: 299 ATDVAARGLDVEGVSHVFNYDVPQDPETYVHRIGRTGRAGNEGMAVTLVSSHDIGAVANI 358 Query: 361 EKLIEKKVD 369 +K + K++ Sbjct: 359 QKTLGVKIE 367 >gi|324329406|gb|ADY24666.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 481 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 220/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ +P IE+ T + IEH +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMNSPTHIEIKAAGVTTDKIEHVLFEVIE--DEKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC + NV ++ L++ + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQDNVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE+ Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|308370192|ref|ZP_07420594.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu002] gi|308378233|ref|ZP_07481964.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu009] gi|308380612|ref|ZP_07490534.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu011] gi|308406085|ref|ZP_07669502.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu012] gi|308325014|gb|EFP13865.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu002] gi|308353157|gb|EFP42008.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu009] gi|308360899|gb|EFP49750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu011] gi|308364543|gb|EFP53394.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu012] Length = 524 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 218/381 (57%), Gaps = 22/381 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++V A+ + G +P IQ T+PL L DV G A+TG GKT +F +P+L Sbjct: 9 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 68 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK--------------NYNLTVAL 105 + G R PR L++ PTREL QV D+ GK L+V Sbjct: 69 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 128 Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165 + GG P+E Q + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P Sbjct: 129 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 188 Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVA 223 I+ I +P RQ++LFSATM D + ++ F+ P I P S+A + E Sbjct: 189 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 248 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 +A K L+ ++LQ++D +IF K+ + L ++GF+V A+HG++ Q + Sbjct: 249 AHAL--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 305 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R K L F+ G I ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G Sbjct: 306 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 365 Query: 344 KAFTLVAKEDIKHIDAIEKLI 364 A TLV +++ I++ + Sbjct: 366 VAVTLVDWDELPRWSMIDQAL 386 >gi|332704960|ref|ZP_08425046.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L] gi|332356312|gb|EGJ35766.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L] Length = 469 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 217/369 (58%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LGLS V + G+ PT IQ + IP +L HDV G++QTGTGKTA+F LPML Sbjct: 3 VSFQSLGLSESCVSQLEKIGFTTPTTIQAQAIPELLNGHDVLGMSQTGTGKTAAFSLPML 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + R + LIL PTRELA QV + ++ L + + GG E Q + L Sbjct: 63 DRIDLDK---RTVQALILTPTRELAQQVNQAIRDFSEDRRLHILTVCGGQSIERQIRMLY 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA +++ TPGR++D +RG L + N+ +V+DEAD ML MGFI ++ I P RQT Sbjct: 120 KGAQIVVGTPGRVIDLLDRGDLKLENLSWVVLDEADEMLSMGFIDDVKKILQQTPEERQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM +Q++ FL++P ++V + IE V + K L +L+ Sbjct: 180 TCFSATMPRPIQELVSKFLKSPVTVKVQQSKAAPARIEQ-RVYMVPRGCSKIRALHPILE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + IIF +K L + L+ G SV HG++ Q R ++L F++ ++ +V Sbjct: 239 LEDP-EASIIFVRTRKAAAELTNQLQAAGHSVDEYHGDLSQSQRERLLYRFRKNQVRWVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV NFD+P++ E+YIHRIGRTGRAG+ G A TL+ + + + I Sbjct: 298 ATDIAARGLDVDHLTHVINFDLPDQVESYIHRIGRTGRAGKTGTAITLIQPFERRKLYQI 357 Query: 361 EKLIEKKVD 369 E+ + ++++ Sbjct: 358 ERKVRQRLE 366 >gi|165869135|ref|ZP_02213795.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167641387|ref|ZP_02399638.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|170704569|ref|ZP_02895035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|177649201|ref|ZP_02932203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190565289|ref|ZP_03018209.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|229603661|ref|YP_002866798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] gi|254685050|ref|ZP_05148910.1| ATP-dependent RNA helicase [Bacillus anthracis str. CNEVA-9066] gi|254722456|ref|ZP_05184244.1| ATP-dependent RNA helicase [Bacillus anthracis str. A1055] gi|254737496|ref|ZP_05195199.1| ATP-dependent RNA helicase [Bacillus anthracis str. Western North America USA6153] gi|254743317|ref|ZP_05201002.1| ATP-dependent RNA helicase [Bacillus anthracis str. Kruger B] gi|254751811|ref|ZP_05203848.1| ATP-dependent RNA helicase [Bacillus anthracis str. Vollum] gi|254760330|ref|ZP_05212354.1| ATP-dependent RNA helicase [Bacillus anthracis str. Australia 94] gi|164715861|gb|EDR21378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167510664|gb|EDR86059.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|170130370|gb|EDS99231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|172084275|gb|EDT69333.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190563316|gb|EDV17281.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|229268069|gb|ACQ49706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] Length = 447 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 180 MLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 Query: 361 EKLI 364 EK + Sbjct: 357 EKTL 360 >gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 529 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 138/352 (39%), Positives = 224/352 (63%), Gaps = 15/352 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF GL P+++ + +AG+ P+PIQ + IPLVL+ D+ AQTGTGKTA++ LP L Sbjct: 11 DFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLN 70 Query: 62 ILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 R+++ + L+L PTRELA QV+D K GK+ + + GG + Q + Sbjct: 71 -------RIKVEDGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQ 123 Query: 119 LERGADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + +GA V + TPGR+LD +GK L N ++++DEAD MLDMGF+ I++I +L+P Sbjct: 124 VAKGAQVAVATPGRLLDLL-KGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTK 182 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM + ++K++ + +P +++ +++ IE + + ++ A++ + Sbjct: 183 RQTLLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYY-IIDEAEREIAVV-R 240 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L ++ K IIF KK +L +L +G+ V A+HG+++Q+ R ++L + +G ++ Sbjct: 241 ILDYENPFK-AIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVK 299 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 ++VA+D+AARGLD+ D+ V N+ +P +E+Y HRIGRTGRAG+ GKA TLV Sbjct: 300 ILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLV 351 >gi|313683287|ref|YP_004061025.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM 16994] gi|313156147|gb|ADR34825.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM 16994] Length = 526 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 151/400 (37%), Positives = 222/400 (55%), Gaps = 18/400 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL +++ ++ AG+ P+PIQ IP++++ DV G A TGTGKTA+F LP L Sbjct: 16 FEAFGLRKEIMQSINFAGFKTPSPIQQMVIPVIMEGRDVVGQAHTGTGKTAAFGLPALNK 75 Query: 63 LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + KG TLI+ PTRELA QV+D KYGK+ + + GG + Q +ER Sbjct: 76 MHLKGGIE-----TLIITPTRELANQVSDEIFKYGKHLGVRTVTIYGGSSYNRQMDLIER 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V+I TPGR+LD +R L +++DEAD MLDMGF+ I I + +P RQTL Sbjct: 131 GAQVIIATPGRLLDMLSRNMLKGFTPSTVILDEADEMLDMGFLDDINEIFTYLPTERQTL 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++E L NP + +T I + + S++ + +L+ S Sbjct: 191 LFSATMPAPIKQLAERILVNPFFASITKSETTNTDITQQYYVI--EESERDDAIIRLMDS 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D K ++FC KK V L + L G+ +HG+++QR R ++ K + +++A Sbjct: 249 EDAKKT-VVFCRTKKEVDRLSNVLSAAGYMAKGLHGDMEQRQRESVIKGLKTDAVDVLIA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI- 360 +D+AARGL I DV HVFN+ +P E+Y+HRIGRTGRAG+ G A TLV + K + I Sbjct: 308 TDVAARGLHIDDVTHVFNYHIPFDPESYVHRIGRTGRAGKKGVAITLVTPLEFKELQRIR 367 Query: 361 --------EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 I K+D +S L +EK + H Sbjct: 368 AKVGTTMEHAYIPSKLDVKEAQVSRLVREIEKQHVYDEAH 407 >gi|149191663|ref|ZP_01869906.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1] gi|148834504|gb|EDL51498.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1] Length = 460 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 145/382 (37%), Positives = 226/382 (59%), Gaps = 7/382 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L +++ + GY TPIQ + +P +L DV G +TG+GKTA+F L +L+ Sbjct: 6 FSTLNLPSELLGTLDSLGYASMTPIQAEALPKILAGKDVIGQGKTGSGKTAAFSLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 66 LRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH +G++ ++ + LV+DEADRMLDMGF + I P RQTL Sbjct: 123 GAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFKDALDAIIDQAPKERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++Q ++ ++ P+ ++V + + +I+ F T + AL LL Sbjct: 183 LFSATFPEQIQTIAARVMKQPEVVKVESKHDHS-SIKQFFYQTNTLEERDNALENLLLTH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V N+ L +GFSV IHG+++QR R + L F ++ ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRDRDQALVQFANKSVSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ ++++ + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGNKGLAFSFYSEKEFYRVARID 359 Query: 362 KLIEKKVDWLNGDLSSLNPPLE 383 + ++ ++ S N P + Sbjct: 360 EYMDMPIEPSELPAKSSNQPFQ 381 >gi|160888638|ref|ZP_02069641.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492] gi|156861952|gb|EDO55383.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492] Length = 618 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 227/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY +P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K R+P++LIL PTREL Q+A + Y K + L V + GG E+Q + L+ Sbjct: 63 --QKINVNNRIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIESQIRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + + I+ +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+ +L++ K I + + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|30262474|ref|NP_844851.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames] gi|47527766|ref|YP_019115.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|49185310|ref|YP_028562.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Sterne] gi|167632590|ref|ZP_02390917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|170687052|ref|ZP_02878271.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|227814717|ref|YP_002814726.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] gi|30257105|gb|AAP26337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Ames] gi|47502914|gb|AAT31590.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. 'Ames Ancestor'] gi|49179237|gb|AAT54613.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Sterne] gi|167532888|gb|EDR95524.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|170669103|gb|EDT19847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|227002434|gb|ACP12177.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] Length = 450 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|322436878|ref|YP_004219090.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9] gi|321164605|gb|ADW70310.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9] Length = 532 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 212/377 (56%), Gaps = 9/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD +S + + G+ PTP+Q K IP L+ D+ A TGTGKT SF++PM+ Sbjct: 64 FADFNISASLKSRLAAGGFATPTPVQAKAIPPALEGRDILATASTGTGKTLSFLIPMIER 123 Query: 63 LEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +E R + R+LIL PTRELA QV + + K L+ GG+ Q Sbjct: 124 MEANSEPSTRGKKGPIRSLILLPTRELAMQVLEAYAKINPQSKSDSVLVCGGLSENTQLD 183 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG +++ TPGR+ D R + +N +E+LV+DE DRMLDMGF+P I+ I +P T Sbjct: 184 QLSRGPRLVVATPGRLEDFLRRRSVNLNFVEMLVLDEVDRMLDMGFLPAIRRIVGALPKT 243 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+ +SAT+ + ++ +++Q P RIE+ T S ++ +E V T Q +K LL Q Sbjct: 244 RQTMCYSATLDANITEIVRDYVQKPVRIEIGTTSKPSDQVE-LKVFTVMQ-DQKLGLLNQ 301 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L + ++F K + LEK G IHG+ Q R L F G + Sbjct: 302 MLNEHE--GTFLVFSRTKHGADRISKKLEKLGHVADVIHGDRSQSQRTSALKGFSTGRHR 359 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ D+ HV N+D+P E+++HRIGRTGRAG+ G A T V ++ Sbjct: 360 ILVATDVAARGIDVRDIAHVVNYDLPGTTEDFVHRIGRTGRAGKKGVATTFVMPQERSDA 419 Query: 358 DAIEKLIEKKVDWLNGD 374 +E+ ++ K +W D Sbjct: 420 RKMERELKIKFEWKEAD 436 >gi|229196679|ref|ZP_04323422.1| ATP-dependent RNA helicase [Bacillus cereus m1293] gi|228586754|gb|EEK44829.1| ATP-dependent RNA helicase [Bacillus cereus m1293] Length = 451 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 153/416 (36%), Positives = 238/416 (57%), Gaps = 28/416 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP++L D+ G A+TGTGKT +FVLP Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 60 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T TIE + T +K AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN-------PIPQKSTGFDRR 409 EK +L P+++ I Q R + P P+KS + +R Sbjct: 357 EK--------------TLGAPIQREIIEQPKIKRVDENGKPVPRPAPKKSGEYRQR 398 >gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I] gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I] Length = 451 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 223/371 (60%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS V+ A+ G+ + T IQ TIPL L+ DV G A TGTGKTA+F +PM+ I Sbjct: 4 FENLKLSEPVMKALASMGFEESTHIQDSTIPLALKGKDVIGQAPTGTGKTAAFGIPMIEI 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + + +++ PTRELA QV++ K G+ + + GG ++ Q K L+ Sbjct: 64 CDNSPS----IQAIVITPTRELAIQVSEELNKIGQFKGIRALPIYGGQEYKWQMKGLKEK 119 Query: 123 ADVLICTPGRILDHFNRGKLLM-NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR++DH + K + N++++LV+DEAD MLDMGFI I + +P RQTL Sbjct: 120 PQIIVATPGRLMDHLTKQKSIKGNDVKMLVLDEADEMLDMGFIDDIYAVMEKLPAERQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM+ E++K++ ++ P + + + I +V + S K L ++L + Sbjct: 180 LFSATMSPEIKKIAVELMKKPHIVGQESKKVKSPAISQHYVEVHE--SGKFEALCRILDT 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q I+F K V L L ++G++ +HG++DQ+ R I+ FK G Q++VA Sbjct: 238 Q-CPDLAIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQFKNGKTQVLVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI DV HVFNFD+P E+Y+HRIGRTGRAG+ G + T V +IK + IE Sbjct: 297 TDVAARGLDISDVSHVFNFDIPRDPESYVHRIGRTGRAGKSGISITFVTFREIKLLKLIE 356 Query: 362 KLIEKKVDWLN 372 ++ ++++ + Sbjct: 357 QVSARRMERME 367 >gi|86143316|ref|ZP_01061718.1| hypothetical protein MED217_09040 [Leeuwenhoekiella blandensis MED217] gi|85830221|gb|EAQ48681.1| hypothetical protein MED217_09040 [Leeuwenhoekiella blandensis MED217] Length = 449 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 157/404 (38%), Positives = 230/404 (56%), Gaps = 7/404 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D ++ ++ A+ D G+ PTPIQ + +V DV GIAQTGTGKT +++LP+L Sbjct: 4 FEDFKINKQLRYAIEDLGFTTPTPIQEQAFGVVKSGRDVVGIAQTGTGKTFAYMLPVLEN 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ ++ PR LIL PTREL QV + E YGK ++ V + GG Q + + +G Sbjct: 64 LK--FSKQINPRVLILVPTRELVLQVVEQIEAYGKYSSIRVVGVYGGTNINTQKEAVIQG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+L+ TPGR+ D L + +++ L+IDE D MLD+GF + NI L+P RQ ++ Sbjct: 122 CDILVGTPGRLYDLAVSRALQLKSVKQLIIDEVDVMLDLGFRFQLVNIFDLLPQRRQNIM 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATMTDE+ ++ + F P+RI+V + + IE + Y+ K LL LL+ + Sbjct: 182 FSATMTDEVDELMDTFFTTPERIQVALSGTPLDAIEQHYYEVPNFYT-KANLLNILLKDK 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 K +IF + KK L LE+ G V IH N Q R+ + F GT +++V Sbjct: 241 KEFKKTLIFVSNKKLADRLFKELEEVFGNEVGVIHANKTQNYRINAIEQFDAGTYRILVT 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARGLD+ +V HVFN DVP AENY+HRIGRTGRAG GK++ L ++ + +AIE Sbjct: 301 TDVMARGLDLDEVTHVFNVDVPRFAENYMHRIGRTGRAGTTGKSYLLGTPDEQERKEAIE 360 Query: 362 KLIEKKVDWLNGDL-SSLNPPLEKIDIAQHNHARKNNPIPQKST 404 KL++ ++ DL L I + N+ NNP + T Sbjct: 361 KLMDMQLP--QADLPEGLEVSKRLIPEEEPNYVEINNPTKRDET 402 >gi|289571435|ref|ZP_06451662.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17] gi|289545189|gb|EFD48837.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17] Length = 489 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 218/381 (57%), Gaps = 22/381 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++V A+ + G +P IQ T+PL L DV G A+TG GKT +F +P+L Sbjct: 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK--------------NYNLTVAL 105 + G R PR L++ PTREL QV D+ GK L+V Sbjct: 72 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131 Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165 + GG P+E Q + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P Sbjct: 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191 Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVA 223 I+ I +P RQ++LFSATM D + ++ F+ P I P S+A + E Sbjct: 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 +A K L+ ++LQ++D +IF K+ + L ++GF+V A+HG++ Q + Sbjct: 252 AHAL--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 308 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R K L F+ G I ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G Sbjct: 309 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 368 Query: 344 KAFTLVAKEDIKHIDAIEKLI 364 A TLV +++ I++ + Sbjct: 369 VAVTLVDWDELPRWSMIDQAL 389 >gi|167764052|ref|ZP_02436179.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC 43183] gi|167698168|gb|EDS14747.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC 43183] Length = 644 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 232/384 (60%), Gaps = 10/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 + R+P++LIL PTREL Q+A + Y K + L V + GG E+Q + L+ Sbjct: 64 QIN---VNNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I+ +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+ +L N K I + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEIARISKKYLHNAKEITIGRRNEGTSNVKHVVFTVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++I KK ++ G++ + EK Sbjct: 358 ERIIGKK--FIQGEMPTGKQICEK 379 >gi|170725255|ref|YP_001759281.1| ATP-dependent RNA helicase SrmB [Shewanella woodyi ATCC 51908] gi|169810602|gb|ACA85186.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 408 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 219/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L P ++ ++ G+ KPT IQ +TIPL + + D+ A TGTGKTASF+LP L Sbjct: 1 MLFEDLLLDPILLESLKAMGHHKPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I++ R R +IL PTRELA+Q+ +L ++ GG+P+ Q + L Sbjct: 61 QHIIDFPRRFSGQARVVILTPTRELASQIHRYASHLAYELDLNTVIITGGVPYAPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR++++ ++G +EILVIDEADRMLDMGF ++ I +Q Sbjct: 121 KGNVDILVATPGRLMEYLDKGLFNAEEVEILVIDEADRMLDMGFSAVVETIAIESVGRKQ 180 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T+LFSAT+ ++ + S L +P ++E P S I H ++ K LL + Sbjct: 181 TMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKI-HQWIHIADDKEHKFKLLCSI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ ++T + I+F ++ V +L L++ G + G+++Q+ R + L F +G + + Sbjct: 240 LQQEETQR-AIVFVKTREAVASLEGMLQRVGIPCSYMRGDMEQKQRFQALGRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ D+ HV NFD+P A+ Y+HRIGRTGRAG G A +LV DI+ + Sbjct: 299 LLATDVAARGIDVEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVG 358 Query: 359 AIEKLIEK 366 IE+ +++ Sbjct: 359 KIERYMDQ 366 >gi|32267267|ref|NP_861299.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449] gi|32263320|gb|AAP78365.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449] Length = 530 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 138/366 (37%), Positives = 220/366 (60%), Gaps = 7/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL V+ + +AG+ P+P+Q ++IP++LQ D+ AQTGTGKTA+F +P+L Sbjct: 47 FDVFGLKDFVLKGIREAGFSTPSPVQSQSIPIILQGKDLIAQAQTGTGKTAAFAIPILNT 106 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + LI+ PTRELA Q+++ K G+ + + GG + Q LE+ Sbjct: 107 LNRNKD----IEALIITPTRELAMQISEEILKLGRFGRIKTICMYGGQSIKRQCDLLEKK 162 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +I TPGR+LDH G++ + +I+V+DE+D MLDMGF+ I+ I +P TRQTLL Sbjct: 163 PKAMIATPGRLLDHLQNGRIAHFSPQIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLL 222 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++ ++ L P +++ T + IE + ++ + +L+++Q Sbjct: 223 FSATMPEPIKALAMKILNEPAFVKITPTDVTNQDIEQQYYII--NEGERDEAIVRLIETQ 280 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + K+ IIF KK L L +GF A+HG+++QR R + + F+E I+++VA+ Sbjct: 281 NPTKS-IIFTRMKKEADALAIRLANRGFKAIALHGDMEQRDRREAIKAFRENKIEILVAT 339 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI DV HVFN+ +P E+Y+HRIGRTGRAG+ G A TL + K + I++ Sbjct: 340 DVASRGLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAVTLATPLEYKDLSKIKQ 399 Query: 363 LIEKKV 368 + + K+ Sbjct: 400 ITKAKL 405 >gi|119475471|ref|ZP_01615824.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] gi|119451674|gb|EAW32907.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] Length = 459 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 152/370 (41%), Positives = 222/370 (60%), Gaps = 8/370 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FA L L P + + GY K TPIQ +++PLVL D+ A+TG+GKTA+F + +LT Sbjct: 4 NFASLDLPPGQLANLQQLGYEKMTPIQQQSLPLVLAGSDIIAKAKTGSGKTAAFGIGLLT 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 K R +T+++ PTREL+ QVA + + N+ V +L GG Q LE Sbjct: 64 ---KINPRDFGTQTMVICPTRELSTQVATEIRRLARYQQNIKVVVLCGGQSIGPQIGSLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGRI DH + L ++ + ILV+DEADRMLDMGF I+ I +P RQT Sbjct: 121 HGAHIVVGTPGRIKDHLRKKTLSLSRLGILVLDEADRMLDMGFYSDIETIIHEMPDDRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT D+++ +S +F ++P I V + + + F+ ++ A LQ+LL Sbjct: 181 LLFSATYPDKIKTLSSSFQRSPVEISVESVRGNEKIHQQLFIC---DKRERLAGLQRLLM 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +++ +IFCN K V +C L G S AIHG+++QR R ++L F + L+V Sbjct: 238 NY-PIESAVIFCNTIKLVKEVCDYLVDIGISAKAIHGDLEQRDRDQVLIQFANHSCSLLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI D+ V NF++P A+ YIHRIGRTGRAG+ G AF+L + DAI Sbjct: 297 ATDVAARGLDIEDLPAVINFELPREADVYIHRIGRTGRAGKEGLAFSLFTDSEKYRFDAI 356 Query: 361 EKLIEKKVDW 370 L E K+++ Sbjct: 357 STLQENKLNF 366 >gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1] gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea MMB-1] Length = 453 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 147/399 (36%), Positives = 233/399 (58%), Gaps = 6/399 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ GL +++ A+ PT IQ + IP +LQ HD+ AQTG+GKTA+F LP+L Sbjct: 28 MTFSKFGLDQEILSALDTLELTAPTSIQEQAIPEILQGHDLIATAQTGSGKTAAFCLPIL 87 Query: 61 TILEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ G +A+ R LI+ PTRELA Q+ N + + ++ L ++ GG+ Q K L Sbjct: 88 QALKDGEKAKPNHVRCLIIAPTRELAIQLNANIKAFNEHLTLRHQVIFGGVRVLPQRKYL 147 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG+D+L+ TPGR+LD RG +L +++ LV+DEADR+LD+GF + I +P RQ Sbjct: 148 KRGSDILVATPGRLLDLHQRGDILFDSLTHLVLDEADRLLDLGFAKELDQIIQALPKQRQ 207 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT ++K+++ L PK + ++ I +K LL +LL Sbjct: 208 TLLFSATFAPPIKKLAKKILNQPKDVTTIQKAAAKPNINQWLHPV--DKKRKTELLLELL 265 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ I+F N KKN + +L + G S A+H + Q R+ + FK I ++ Sbjct: 266 -NRKPHAQVIVFTNTKKNADLVAQALNQDGISAGALHSDRTQDERIHVFDQFKNNEISIL 324 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI ++ V N+D+P +E+YIHRIGRTGRAG G+AF++ + ++ + Sbjct: 325 VATDVAARGIDIQNLPLVINYDLPKVSEDYIHRIGRTGRAGHAGQAFSIASADEFDALLD 384 Query: 360 IEKLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKN 396 IE L KK+ +++G + PL++ A+ ++K+ Sbjct: 385 IEALTGKKITRKYIDGFHPDHDIPLQRKAKAKPTKSKKD 423 >gi|270294991|ref|ZP_06201192.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274238|gb|EFA20099.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 650 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 227/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY +P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K R+P++LIL PTREL Q+A + Y K + L V + GG E+Q + L+ Sbjct: 63 --QKINVNNRIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIESQIRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + + I+ +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+ +L++ K I + + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|297738935|emb|CBI28180.3| unnamed protein product [Vitis vinifera] Length = 916 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 150/389 (38%), Positives = 218/389 (56%), Gaps = 21/389 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA++ L + + YVKPTPIQ IP+ + D+ AQTG+GKTA+F P++ Sbjct: 423 FAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICG 482 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +G AR+ P LIL PTREL+ Q+ + +K+ L V + GG P Q + Sbjct: 483 ILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFR 542 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--- 174 LERG D+L+ TPGR++D R ++ + I+ L +DEADRMLDMGF P I+ I + Sbjct: 543 NLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMP 602 Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 P RQT+LFSAT +E+Q+++ +FL N + V S+ + I + + + K Sbjct: 603 PPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQ--RVEFVEDTDKRY 660 Query: 234 LLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 L LLQSQ T + ++F K+ V L L G + AIHG+ Q R + Sbjct: 661 HLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERA 720 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L +FK G +MVA+D+AARGLDIP V HV NFD+P ++Y+HRIGRTGRAG+ G A Sbjct: 721 LKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLATA 780 Query: 348 LVAKEDIKHIDAIEKLIEKK----VDWLN 372 ++ ++ +L+++ WLN Sbjct: 781 FFNDGNLSLAKSLVELMQESNQEVPSWLN 809 >gi|71891896|ref|YP_277626.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796002|gb|AAZ40753.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 569 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 224/369 (60%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL+ +V + D GY KP PIQI+ IP +L +DV G+A TG+GKTA+FVLP+L Sbjct: 8 FIDLGLNRYIVNVLHDVGYTKPLPIQIQCIPYLLAGYDVLGMAHTGSGKTAAFVLPLLHN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 ++ + + LI+ PTRELA Q V NF KY K N V L GG + Q L Sbjct: 68 VDINNS---CSQGLIITPTRELAIQIGRVCSNFAKYMKKIN--VVTLYGGQSYGIQLSAL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + +++ TPGR++DH NRG ++ ++ LVIDEAD ML MGF+ ++ I +P RQ Sbjct: 123 NKRPHIIVSTPGRLIDHLNRGTANLSQLKTLVIDEADEMLRMGFLEDVERIIKNIPVKRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSAT+ ++++S F+ NPK + +++ +S I + ++ +K AL+ + L Sbjct: 183 TALFSATLPMGIRRISYRFMNNPKEVFIHSNTSMCANIRQSYWLVHSGIAKHEALM-RFL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D I+F K + + LE+ G++ A++G+++Q R + L + G + ++ Sbjct: 242 ETED-FDAAIVFVRTKYATLEISEILERFGYNSAALNGDMNQTVRHQTLDRLRHGKLDIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + V N+D+P ++ YIHRIGRTGRAG GK+ V ++ + + Sbjct: 301 IATDVAARGLDVHRISLVINYDIPINSDAYIHRIGRTGRAGCMGKSLLFVEHKEYRLLRH 360 Query: 360 IEKLIEKKV 368 IE+ I+ K+ Sbjct: 361 IERKIKLKI 369 >gi|15610347|ref|NP_217727.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Rv] gi|15842798|ref|NP_337835.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis CDC1551] gi|121639098|ref|YP_979322.1| putative ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663072|ref|YP_001284595.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra] gi|148824410|ref|YP_001289164.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11] gi|167968329|ref|ZP_02550606.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis H37Ra] gi|215405221|ref|ZP_03417402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 02_1987] gi|215413087|ref|ZP_03421788.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 94_M4241A] gi|215432173|ref|ZP_03430092.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054] gi|215447511|ref|ZP_03434263.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85] gi|224991590|ref|YP_002646279.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800250|ref|YP_003033251.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN 1435] gi|254233823|ref|ZP_04927148.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C] gi|254365837|ref|ZP_04981882.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str. Haarlem] gi|254552311|ref|ZP_05142758.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188256|ref|ZP_05765730.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A] gi|260202366|ref|ZP_05769857.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46] gi|260206559|ref|ZP_05774050.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85] gi|289444785|ref|ZP_06434529.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46] gi|289448897|ref|ZP_06438641.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A] gi|289555487|ref|ZP_06444697.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN 605] gi|289575929|ref|ZP_06456156.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85] gi|289747027|ref|ZP_06506405.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 02_1987] gi|289755331|ref|ZP_06514709.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054] gi|289759347|ref|ZP_06518725.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85] gi|294993850|ref|ZP_06799541.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 210] gi|297635860|ref|ZP_06953640.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN 4207] gi|297732857|ref|ZP_06961975.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN R506] gi|298526689|ref|ZP_07014098.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis 94_M4241A] gi|306777536|ref|ZP_07415873.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu001] gi|306786080|ref|ZP_07424402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu003] gi|306790447|ref|ZP_07428769.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu004] gi|306794968|ref|ZP_07433270.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu005] gi|306799169|ref|ZP_07437471.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu006] gi|306805014|ref|ZP_07441682.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu008] gi|306809200|ref|ZP_07445868.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu007] gi|306973655|ref|ZP_07486316.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu010] gi|313660190|ref|ZP_07817070.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN V2475] gi|2072674|emb|CAB08305.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium tuberculosis H37Rv] gi|13883125|gb|AAK47649.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis CDC1551] gi|121494746|emb|CAL73227.1| Probable ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599352|gb|EAY58456.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C] gi|134151350|gb|EBA43395.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str. Haarlem] gi|148507224|gb|ABQ75033.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra] gi|148722937|gb|ABR07562.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11] gi|224774705|dbj|BAH27511.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321753|gb|ACT26356.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN 1435] gi|289417704|gb|EFD14944.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46] gi|289421855|gb|EFD19056.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A] gi|289440119|gb|EFD22612.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN 605] gi|289540360|gb|EFD44938.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85] gi|289687555|gb|EFD55043.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 02_1987] gi|289695918|gb|EFD63347.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054] gi|289714911|gb|EFD78923.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85] gi|298496483|gb|EFI31777.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis 94_M4241A] gi|308214084|gb|EFO73483.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu001] gi|308329234|gb|EFP18085.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu003] gi|308333066|gb|EFP21917.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu004] gi|308336752|gb|EFP25603.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu005] gi|308340590|gb|EFP29441.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu006] gi|308344527|gb|EFP33378.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu007] gi|308348323|gb|EFP37174.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu008] gi|308356899|gb|EFP45750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu010] gi|323718078|gb|EGB27260.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CDC1551A] gi|326902560|gb|EGE49493.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis W-148] gi|328459985|gb|AEB05408.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN 4207] Length = 527 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 218/381 (57%), Gaps = 22/381 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++V A+ + G +P IQ T+PL L DV G A+TG GKT +F +P+L Sbjct: 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK--------------NYNLTVAL 105 + G R PR L++ PTREL QV D+ GK L+V Sbjct: 72 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131 Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165 + GG P+E Q + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P Sbjct: 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191 Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVA 223 I+ I +P RQ++LFSATM D + ++ F+ P I P S+A + E Sbjct: 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 +A K L+ ++LQ++D +IF K+ + L ++GF+V A+HG++ Q + Sbjct: 252 AHAL--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 308 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R K L F+ G I ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G Sbjct: 309 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 368 Query: 344 KAFTLVAKEDIKHIDAIEKLI 364 A TLV +++ I++ + Sbjct: 369 VAVTLVDWDELPRWSMIDQAL 389 >gi|228918066|ref|ZP_04081594.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841546|gb|EEM86662.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 481 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 220/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY +PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYERPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEV 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|189913376|ref|YP_001964605.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 534 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 138/352 (39%), Positives = 224/352 (63%), Gaps = 15/352 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF GL P+++ + +AG+ P+PIQ + IPLVL+ D+ AQTGTGKTA++ LP L Sbjct: 16 DFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLN 75 Query: 62 ILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 R+++ + L+L PTRELA QV+D K GK+ + + GG + Q + Sbjct: 76 -------RIKVEDGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQ 128 Query: 119 LERGADVLICTPGRILDHFNRGKLLMN-NIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + +GA V + TPGR+LD +GK L N ++++DEAD MLDMGF+ I++I +L+P Sbjct: 129 VAKGAQVAVATPGRLLDLL-KGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTK 187 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM + ++K++ + +P +++ +++ IE + + ++ A++ + Sbjct: 188 RQTLLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYY-IIDEAEREIAVV-R 245 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L ++ K IIF KK +L +L +G+ V A+HG+++Q+ R ++L + +G ++ Sbjct: 246 ILDYENPFK-AIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVK 304 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 ++VA+D+AARGLD+ D+ V N+ +P +E+Y HRIGRTGRAG+ GKA TLV Sbjct: 305 ILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLV 356 >gi|7446043|pir||T15942 hypothetical protein F01F1.7 - Caenorhabditis elegans Length = 701 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 211/383 (55%), Gaps = 34/383 (8%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++ + G +V AV + GY++PTPIQ + IP+ LQ DV G+A+TG+GKTA+F+LP+L Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361 Query: 62 I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +E+ R P +I+ PTRELA Q+ + K+GK + +IGG E Q Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQ 421 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL G +V+I TPGR+LD LL+N +++DEADRMLDMGF P +Q + +P Sbjct: 422 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481 Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 T RQT++F+ATM+ +++++ +L+ P + + + Sbjct: 482 DTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA 541 Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270 E +E V +K L ++L+SQ IIF NQKK L L K GF Sbjct: 542 GKPTERVEQ--VVYMVPEDRKRKKLVEVLESQ-FQPPIIIFVNQKKGADMLSKGLTKLGF 598 Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330 +HG Q R L KEGT ++VA+D+A RG+D+ DV V N+D+ E+Y Sbjct: 599 KPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYT 658 Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353 HRIGRTGRAG+HGKA T + +D Sbjct: 659 HRIGRTGRAGKHGKAITFLTPDD 681 >gi|309774568|ref|ZP_07669594.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae bacterium 3_1_53] gi|308917683|gb|EFP63397.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae bacterium 3_1_53] Length = 585 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 140/351 (39%), Positives = 214/351 (60%), Gaps = 9/351 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L +S +V+ AV + GY T IQ ++IPL+++ DV G + TGTGKTA+F +P + Sbjct: 4 FNELQISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIPAIEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 + +G R P LI+ PTREL QVA K+ K + + + GG P + Q + L+R Sbjct: 64 VCQG---TRNPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQ 179 G +++ TPGRI+DH NR L +++ ++++DEAD ML+MGF I+ I S++P Q Sbjct: 121 GCGIVVGTPGRIMDHLNRRTLKLDDTNMVILDEADEMLNMGFKEDIEEILSMMPEGNEHQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSAT E+ ++++ F +P R+E+ + T +T+E + A KK L+ LL Sbjct: 181 TVLFSATWPAEILRITKQFQNDPVRVEIKSSQRTIDTVEQIYYE--APRGKKANALRVLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D +IFCN KK V LC L K ++HG++ Q R +++ F+ G ++ Sbjct: 239 SHYDP-DLCMIFCNTKKMVDELCDELNKHDIKAISLHGDMKQEFRSRVMEQFRSGNYPIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 +A+D+AARG+D+ D+ V NFD+P E YIHR+GRTGRAG+ G A TLV+ Sbjct: 298 IATDVAARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVS 348 >gi|228936735|ref|ZP_04099526.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822944|gb|EEM68785.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 481 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 220/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++V A+ GY PT +Q + IP+ L++ D+ +QTG+GKTASF +P+ + Sbjct: 6 FTNYALSKEIVRALTGLGYENPTEVQGEVIPVALKKRDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++ P IE+ T + IEH T + +K +LL+ + + Sbjct: 183 FSATLPEDVEKLSRTYMDLPTYIEIKAAGITTDKIEHTLFETREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L + + IHG + Q R +++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYEDRFLEEIES 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7] gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7] Length = 423 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 222/369 (60%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ ++ A+ +AGY K TPIQ IP +L D+ G AQTGTGKTA+F LP+L Sbjct: 1 MLFNELELNQHLLHALKEAGYTKATPIQEDAIPHLLNNKDLLGCAQTGTGKTAAFALPIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I+E+ + LIL PTRELA Q+ ++F+ Y K L + ++ GG+ Q L Sbjct: 61 QNIMEEKTVGKGAIKALILAPTRELAIQIGESFQTYAKYLPLNIQVIFGGVSQNPQTATL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG D+LI TPGR+LD +G + +N +E V+DEAD MLDMG + +++I +P RQ Sbjct: 121 KRGTDILIATPGRLLDLIRQGFVKLNQVEFFVLDEADMMLDMGMLRDVRHIIRELPKKRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 ++ FSATM E++K++ L NP ++ VN SST E I + K LL LL Sbjct: 181 SMFFSATMPTEIEKLAGTILSNPVKVVVNPVSSTVEVILQSVY--RVAKTDKTNLLIHLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++ ++ ++F K + L + GF+ AIHGN Q +R + L NFK ++ Sbjct: 239 KNKQ-VERSLVFSRTKHGANKIVKKLLQAGFTAEAIHGNKSQNARQQALENFKTMKTSVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P++ V FD+P E Y+HRIGRTGRAG GKA + + + + Sbjct: 298 VATDIAARGIDVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAISFCDETESDLLRD 357 Query: 360 IEKLIEKKV 368 IEKL ++KV Sbjct: 358 IEKLSKRKV 366 >gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis DSM 44728] Length = 557 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 144/389 (37%), Positives = 218/389 (56%), Gaps = 12/389 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + V A+ + G + IQ IP+ ++ +D+ G A TGTGKT F +P+L T Sbjct: 30 FTDLGVRAETVAALSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLET 89 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + P+ L++ PTREL QV+ + E GK + V + GG +E Q + L Sbjct: 90 VTSAAEGADGRPQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEALRT 149 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++++ TPGR+LD L + + V+DEADRMLD+GF ++ + + +P RQT+ Sbjct: 150 GVEIVVGTPGRLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPEQRQTM 209 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D + +S FL+ P I + A + + +A K +L ++LQ+ Sbjct: 210 LFSATMPDAIVSLSRKFLKQPMTIHAEVATDNAPSAQTKQLAYLTHSLNKIEVLARILQA 269 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D I+F K++ + LE +GF+V A+HG++ Q +R + L F+ G I ++VA Sbjct: 270 KDRGLT-IVFSRTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFRSGKIDVLVA 328 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ DV HV N+D P AE Y+HRIGRTGRAG G A T V+ ED Sbjct: 329 TDVAARGLDVRDVTHVINYDSPEDAETYVHRIGRTGRAGATGVAVTFVSWEDAPRW---- 384 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 K+I K +D L+ P+E + H Sbjct: 385 KIIAKTLDL------ELSDPVETYHTSDH 407 >gi|320322648|gb|EFW78741.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. glycinea str. B076] Length = 442 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA +GL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASIGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|313213311|emb|CBY37141.1| unnamed protein product [Oikopleura dioica] Length = 499 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 218/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59 + F + G+ ++ V AGYV PT IQ ++ P+ L D+ GIA+TG+GKT +FVLP + Sbjct: 55 LQFMEAGIPDYLMGTVTAAGYVTPTTIQSQSWPIALSGADMQGIARTGSGKTLAFVLPSI 114 Query: 60 LTILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + I+ + R P +IL PTRELA QV + E++GK + + GG AQ Sbjct: 115 IHIMAQPDLRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGA 174 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERGA +++ PGR+LD G+ ++ L++DEADRMLDMGF P I+ I + R Sbjct: 175 LERGAHIVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDR 234 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL+FSAT E+QK++ +F++ P +I + TA V + + K A+ Sbjct: 235 QTLMFSATWPKEIQKLASDFMKTPTQIFIGNQELTANPNIEQVVEVVSDFDK--AMRFNY 292 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q T ++F + K++ NL +++ AIHG+ DQR R ++L +F+ G I + Sbjct: 293 WFQQITSTKILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISV 352 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+G V N+D P++ E+Y+HRIGRT R + GK+ + + + KH Sbjct: 353 LVATDVAARGLDIDDIGTVINYDFPSQLEDYVHRIGRTARGEKKGKSISFITAKSAKHAS 412 Query: 359 AIEKLIEK 366 A+ KL+E+ Sbjct: 413 ALVKLLEQ 420 >gi|256785357|ref|ZP_05523788.1| helicase [Streptomyces lividans TK24] Length = 513 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 219/374 (58%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F LG+ P+ A+ G + P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 38 FRSLGILPETAEALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLER 97 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRA P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 98 VTVPADVEAGRAAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAY 157 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL + +I+ LV+DEAD MLD+GF+P ++ I + Sbjct: 158 EPQVEALKQGVDVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKIIN 217 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231 ++P RQT+LFSATM + ++ ++ P I +P T+ + Y A K Sbjct: 218 MLPARRQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNMDK 277 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ+ D ++FC K+ +L L+++GF+ A+HG++ Q +R + L F Sbjct: 278 PEMVARILQA-DGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 336 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TLV Sbjct: 337 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 396 Query: 352 EDIKHIDAIEKLIE 365 +DI I K ++ Sbjct: 397 DDIPRWQLINKALD 410 >gi|226943260|ref|YP_002798333.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ] gi|226718187|gb|ACO77358.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ] Length = 521 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 139/374 (37%), Positives = 227/374 (60%), Gaps = 10/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L P+++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +++ Sbjct: 135 FHDFDLDPRLMHAIHDVGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISIISQ 194 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + + L V +GG+ F+ Q K+ Sbjct: 195 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDALALTRYTGLNVMSFVGGMDFDKQLKQ 254 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE + D+L+ TPGR+LD RG++ ++ +E+LV+DEADRMLDMGFIP ++ I P+ Sbjct: 255 LEEKFCDILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPYK 314 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ ++++E A S K LL Sbjct: 315 GERQTLLFSATFTEDVMNLAKQWTVDPAIVEIEPEHVASDSVEQHVYAVAG--SDKYRLL 372 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +++ + ++F N+K V + L K G S + G++ Q R+K+L F+EG Sbjct: 373 YNLV-TRNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIKVLEGFREGR 431 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ + V HV N+ +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 432 IRVLVATDVAGRGIHVEGVSHVINYTLPEDPDDYVHRIGRTGRAGSKGTSISFAGEDDAF 491 Query: 356 HIDAIEKLIEKKVD 369 + IE L+ +K+D Sbjct: 492 ALPPIEALLGRKID 505 >gi|37676305|ref|NP_936701.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus YJ016] gi|37200846|dbj|BAC96671.1| DNA and RNA helicase [Vibrio vulnificus YJ016] Length = 459 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 223/363 (61%), Gaps = 7/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P+++ + GY + TPIQ +++PLVL DV G +TG+GKTA+F L +L+ Sbjct: 5 FNTLSLKPELLSTLDSLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSN 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 65 LNVSRFRVQ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ + + LV+DEADRML+MGF I I P RQTL Sbjct: 122 GAHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++ ++ +QNP+ ++V + + TIE F + + AL LL Sbjct: 182 LFSATFPEQIETIASKVMQNPEMVKVES-THQKSTIEQRFYQLESTEERDNALEALLLTH 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN KK V N+ L + FSV +HG+++QR R + L+ F +I ++VA Sbjct: 241 RP--ESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ V NF++ E ++HRIGRTGRAG G A + +++++ ++ IE Sbjct: 299 TDVAARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIE 358 Query: 362 KLI 364 + + Sbjct: 359 EYM 361 >gi|89096784|ref|ZP_01169676.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. NRRL B-14911] gi|89088799|gb|EAR67908.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. NRRL B-14911] Length = 480 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 220/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD LS ++ A+ Y PT +Q K IPL +++ D+ AQTG+GKTASF +P+ + Sbjct: 5 FADYHLSEEIQRALGVLKYESPTEVQSKVIPLAMEKQDLVVKAQTGSGKTASFGIPVCDM 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ LIL PTRELA QV ++ G+ + + G PF Q ++L++ Sbjct: 65 VE---WEEKSPQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFTKQKEELKQK 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR++DH +R L+++ I+ L+IDEAD ML+ GFI ++ I +P R T++ Sbjct: 122 THVVVGTPGRVMDHIDRETLVLDRIQYLIIDEADEMLNRGFIDEVEAIIKELPSDRVTMV 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++ + ++++P +E+ + TAETIEH + + K +LL+ + ++ Sbjct: 182 FSATLPKDVEALCHEYMKDPVHVEIESTGVTAETIEHLLMEV--KQEDKISLLKDITVTE 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + +IFC K++V + L+ G+S +HG ++Q R ++ FK G + +VA+ Sbjct: 240 NP-DSCLIFCRTKEHVDTVYTELDGAGYSSERLHGGLEQEDRFAVMEGFKMGNYRYLVAT 298 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI +V V N+DVP E+Y+HR GRTGRAG GKA T + K + AIE+ Sbjct: 299 DVAARGIDIDNVSLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFATPFEEKFLKAIER 358 Query: 363 LI 364 I Sbjct: 359 YI 360 >gi|150391088|ref|YP_001321137.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950950|gb|ABR49478.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens QYMF] Length = 549 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 145/397 (36%), Positives = 229/397 (57%), Gaps = 10/397 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+S ++ + + +PTP+Q++ IP +L + DV AQTGTGKT +F+LP+L Sbjct: 5 FAKLGISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILE- 63 Query: 63 LEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 R V P + LI+ PTRELA Q+ +K + + + GG E Q +KL+ Sbjct: 64 ----RVNVEKPTIQALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR+LDH R + + + +LV+DEAD+ML MGF+ +++I + +P RQ Sbjct: 120 GSIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQN 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 + FSATM ++++ ++E ++++P +I+V + T + I + T + K LL QL Sbjct: 180 MFFSATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRG--KQDLLCQLFD 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K+ + L +L G++ +HG++ Q R K++ FK+ IQ +V Sbjct: 238 EYNPFM-AIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V H+FN+D+P E+YIHRIGRTGRAG G A T + D + I Sbjct: 297 ATDVAARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKII 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397 EK+I+ +D ++ E+ D + R N+ Sbjct: 357 EKVIKMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGND 393 >gi|288800406|ref|ZP_06405864.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str. F0039] gi|288332619|gb|EFC71099.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str. F0039] Length = 641 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 226/368 (61%), Gaps = 12/368 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F LG+S ++ A+ + G+ PTP+Q + IP +L + +DV +AQTGTGKTA++ LP++ Sbjct: 4 FEMLGISEEIRQAIEELGFEHPTPVQEEVIPYLLGEGNDVIALAQTGTGKTAAYGLPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +K + + + LIL PTREL Q++D +F KY K LTV + GG E Q K Sbjct: 63 --QKVNPQQKHTQALILSPTRELCLQISDSLSDFSKYIKG--LTVVPVYGGTSIETQIKA 118 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G +++ TPGR++D +RG + N+ +V+DEAD ML+MGF I I VP R Sbjct: 119 LKKGTQIIVATPGRLIDLIHRGVAKLENVTNVVLDEADEMLNMGFSESINEILECVPKDR 178 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 TLLFSATM+ E+++++ N+L N K I V + + AE++ H + A+ K L+++ Sbjct: 179 NTLLFSATMSKEIERIARNYLTNHKEIVVGSRNEGAESVNHIYYMVNAK--DKYLALKRI 236 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ IIFC K+ + L G++ A+HG++ Q+ R + F++ T Q Sbjct: 237 VDYYPSI-FAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRKHTTQF 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ D+ HV NF +P+ E+Y HR GRTGRAG+ G + +++ + + Sbjct: 296 LVATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIMHTRERSKMH 355 Query: 359 AIEKLIEK 366 AIEK+I K Sbjct: 356 AIEKVISK 363 >gi|289769255|ref|ZP_06528633.1| helicase [Streptomyces lividans TK24] gi|289699454|gb|EFD66883.1| helicase [Streptomyces lividans TK24] Length = 556 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 219/374 (58%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F LG+ P+ A+ G + P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 81 FRSLGILPETAEALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLER 140 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRA P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 141 VTVPADVEAGRAAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAY 200 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL + +I+ LV+DEAD MLD+GF+P ++ I + Sbjct: 201 EPQVEALKQGVDVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKIIN 260 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231 ++P RQT+LFSATM + ++ ++ P I +P T+ + Y A K Sbjct: 261 MLPARRQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNMDK 320 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ+ D ++FC K+ +L L+++GF+ A+HG++ Q +R + L F Sbjct: 321 PEMVARILQA-DGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 379 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TLV Sbjct: 380 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 439 Query: 352 EDIKHIDAIEKLIE 365 +DI I K ++ Sbjct: 440 DDIPRWQLINKALD 453 >gi|113477200|ref|YP_723261.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101] gi|110168248|gb|ABG52788.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101] Length = 495 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 226/376 (60%), Gaps = 12/376 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA LG+S + + G+ +PTPIQ + IP +L+ D+ G AQTGTGKTA+F LP Sbjct: 3 LSFASLGISEERANHLETIGFTEPTPIQAQAIPPLLEGKDIVGQAQTGTGKTAAFSLP-- 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYN------LTVALLIGGIPFE 113 ILE+ + LIL PTRELA QV + ++ G N L V + GG E Sbjct: 61 -ILEQIDIDTNAVQALILTPTRELALQVTEAIRQFTGINSKGPTKRRLFVLTVYGGQSIE 119 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q+++L++G +++ TPGRI+D NR L +++++++V+DEAD ML MGFI ++ I Sbjct: 120 RQSQRLQKGVHIVVGTPGRIIDMLNRNSLKLDHLKMMVLDEADEMLSMGFIQDVEKILEA 179 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 P RQT FSATM ++K+ +LQ+P ++V +T + I +SK A Sbjct: 180 APAERQTAFFSATMDYSIRKLVNKYLQSPVTVKVAQQKTTPKRITQTVYILPRGWSKGKA 239 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L Q +L+ +D + +IF ++ L + L+ G SV HGN++Q R ++L+ F+ Sbjct: 240 L-QPILELEDP-EAALIFVRTRQAAAELTNQLQSAGHSVDEYHGNLNQSQRERLLTRFRN 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++ +VA+D+AARGLD+ + HV N+D+P+ ++Y+HRIGRTGRAGR G A +L+ D Sbjct: 298 QQVRWVVATDIAARGLDVDHLTHVINYDLPDSVDSYVHRIGRTGRAGREGTAISLIHPVD 357 Query: 354 IKHIDAIEKLIEKKVD 369 + + IE+ + ++++ Sbjct: 358 KRKLRLIERHLRQRLN 373 >gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145] gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145] Length = 587 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 224/374 (59%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59 + F D+ L P VV L+A G+ +PTPIQ + IP +L+ +DV G AQTGTGKTA+F LP Sbjct: 8 VSFQDMAL-PSVVLNQLEALGFTQPTPIQQQAIPSLLEGNDVLGEAQTGTGKTAAFSLPA 66 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L +E + + +M L++ PTRELA QVAD E + K + VA + GG F Q + Sbjct: 67 LASIEANQRQTQM---LVVTPTRELAIQVADAIESFSKQMKGMEVATVYGGSAFGPQIQA 123 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RGA V++ TPGR++D N+ L ++ + V+DEAD ML+MGFI I+ I VP T Sbjct: 124 LKRGASVVVGTPGRLIDLLNKKVLKLDGLRFAVLDEADEMLNMGFIEDIETILQSVPDTA 183 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM ++K+++ +L +P I + I A K L +L Sbjct: 184 QRALFSATMPTAIRKLAKTYLTDPVNIRIAPVEQAKANIRQR--AWKVMGMTKMTALTRL 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + + ++F +++ +++ L++QGF + G+++Q R + ++ + G I++ Sbjct: 242 LEVTE-YQRALVFVRTRQDTMDVAELLQRQGFRAAPLSGDLNQAQREQTVTQLRSGHIKV 300 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+ ARGLD+P++ HV N+D+P+ E+Y+HRIGRTGRAGR G+A ++ + Sbjct: 301 LVATDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRSGEAILFYRGKERHLLR 360 Query: 359 AIEKLIEKKVDWLN 372 EKL +++ + Sbjct: 361 HYEKLTNGSIEYFD 374 >gi|219559266|ref|ZP_03538342.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17] Length = 508 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 218/381 (57%), Gaps = 22/381 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++V A+ + G +P IQ T+PL L DV G A+TG GKT +F +P+L Sbjct: 9 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 68 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK--------------NYNLTVAL 105 + G R PR L++ PTREL QV D+ GK L+V Sbjct: 69 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 128 Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165 + GG P+E Q + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P Sbjct: 129 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 188 Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVA 223 I+ I +P RQ++LFSATM D + ++ F+ P I P S+A + E Sbjct: 189 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 248 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 +A K L+ ++LQ++D +IF K+ + L ++GF+V A+HG++ Q + Sbjct: 249 AHAL--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 305 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R K L F+ G I ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G Sbjct: 306 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 365 Query: 344 KAFTLVAKEDIKHIDAIEKLI 364 A TLV +++ I++ + Sbjct: 366 VAVTLVDWDELPRWSMIDQAL 386 >gi|117919870|ref|YP_869062.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3] gi|117612202|gb|ABK47656.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3] Length = 427 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 208/369 (56%), Gaps = 16/369 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA+LG+ + + + Y PTPIQ TIP VL DV A TG+GKTA+F +P+L Sbjct: 10 SFAELGIIAPLCNRLSELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQ 69 Query: 62 IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 L EK +VR L+L PTRELA QVAD+F Y ++N L + GG+ Sbjct: 70 RLFEAKTAEKSAGQVR---CLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L GADVL+ TPGR+LD L +N + LV+DEADRML +GF + + Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLNRVSALVLDEADRMLSLGFTDELNQVLEA 186 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P +QTLL+SAT +E++ ++ L P +E + S TIE + +K A Sbjct: 187 LPSKKQTLLYSATFPEEVRALTAKLLHQP--LEYHLQSEQESTIEQRVITV--NREQKTA 242 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L++ Q +IF + K +L L K+G S HG+ Q +R ++L FK Sbjct: 243 LLAHLIK-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKS 301 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I +++A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ E+ Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361 Query: 354 IKHIDAIEK 362 H IEK Sbjct: 362 YHHFGVIEK 370 >gi|152977726|ref|YP_001343355.1| ATP-dependent RNA helicase RhlB [Actinobacillus succinogenes 130Z] gi|189040023|sp|A6VKC3|RHLB_ACTSZ RecName: Full=ATP-dependent RNA helicase rhlB gi|150839449|gb|ABR73420.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes 130Z] Length = 413 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 153/412 (37%), Positives = 237/412 (57%), Gaps = 14/412 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P+++ A+ D + TPIQ ++PL LQ DV G AQTGTGKT +F+ Sbjct: 11 FADLPLHPQILAALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHH 70 Query: 63 LEKGRAR--VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + PR LIL PTRELA Q+A + E + L +AL GG ++ Q K +E Sbjct: 71 LLTHQPDFITNQPRALILAPTRELAVQIAHDAESLAQTTKLRIALAYGGDGYDKQLKTIE 130 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178 G D+LI T GR++D+ +G + N+I+++V+DEADRM D+GFI I+ + P +R Sbjct: 131 NGVDILIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPKSR 190 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237 T+LFSAT++ ++++++ + +P+ IE+ T I E F Y K ALL Sbjct: 191 LTMLFSATLSYKVRELAFEDMNDPEYIEIEPLQKTGHRIKEELF---YPSNRDKMALLMT 247 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ ++ + IIF N K + L G V + G++ Q+ R+ +L F +G + Sbjct: 248 LLE-EEWPERCIIFANTKHRCEEIWGYLAADGQRVGLLTGDVAQKKRLALLKQFTDGELD 306 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGL IPDV HVFN+D+P+ E+Y+HRIGRTGRAG G + + ++ ++ Sbjct: 307 ILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGMSISFACEQYAMNL 366 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409 AIE+ I + +S +P D+ + ++N+ IP S + +R Sbjct: 367 PAIEEYIGHHI-----PVSQYDPDSLINDLPKPYRIKRNHTIPHSSRDYKKR 413 >gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10] Length = 505 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 146/374 (39%), Positives = 217/374 (58%), Gaps = 16/374 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++V A+ + G P IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 12 FAQLGVRDEIVRALDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIPFE 113 + G RA PR L++ PTREL QV D+ K+ L+V + GG P+E Sbjct: 72 ITAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYE 131 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I Sbjct: 132 PQIDALRAGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQYSK 230 +P RQ++LFSATM D + ++ F+ P I P S A T+++ + A Sbjct: 192 IPDDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVY---RAHALD 248 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K L+ ++LQ++ +IF K+ + L ++GF V A+HG++ Q +R K L Sbjct: 249 KVELVSRVLQAESRGAT-MIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKA 307 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 F+ G I ++VA+D+AARG+DI DV HV N+ +P + Y+HRIGRTGRAG+ G A TLV Sbjct: 308 FRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVD 367 Query: 351 KEDIKHIDAIEKLI 364 +++ I+K + Sbjct: 368 WDELARWALIDKAL 381 >gi|47570033|ref|ZP_00240694.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] gi|47553285|gb|EAL11675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] Length = 451 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP++L D+ G A+TGTGKT +FVLP Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 60 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T TIE + T +K AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 356 Query: 361 EKLI 364 EK + Sbjct: 357 EKTL 360 >gi|332535929|ref|ZP_08411636.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505] gi|332034692|gb|EGI71243.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505] Length = 422 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 220/370 (59%), Gaps = 15/370 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F +LGL P+++ + D Y +PTPIQ + IP +L D+ A TG+GKTA+F LPML Sbjct: 9 NFNELGLIPELIARLSDLEYTQPTPIQAQAIPSILTGSDLIAGANTGSGKTATFALPMLQ 68 Query: 61 -TILEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 LE G ++ LIL PTRELA QVAD+ + Y N+N + + GG+ Sbjct: 69 KAFLELGAKSTTSKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVN 128 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L GAD+++ TPGR+LD + + ++ + LV+DEADRML +GF + ++ +L Sbjct: 129 TQMQALRGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELADLLAL 188 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKC 232 +P +QT+LFSAT ++++ +++ L +P I+V N ST ++ F + K Sbjct: 189 MPAKKQTMLFSATFPEQVKLLTQELLNDPVEIQVQNKDEST--LVQRVFTVNKGE---KT 243 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 +L L+++ + +IF N KK+ +L LEK+G + HG+ Q R +++ FK Sbjct: 244 TVLAHLIKTHK-WRQVLIFVNAKKDCEHLAAKLEKRGVNAQVFHGDKGQSERTRVIEKFK 302 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I++++A+D+AARGLDI + V NF++P +Y+HRIGR+GRAG G A +LV E Sbjct: 303 AGEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLVDYE 362 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 363 DFHHFKVIEK 372 >gi|89094340|ref|ZP_01167281.1| ATP-dependent RNA helicase, DEAD box family protein [Oceanospirillum sp. MED92] gi|89081399|gb|EAR60630.1| ATP-dependent RNA helicase, DEAD box family protein [Oceanospirillum sp. MED92] Length = 412 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 156/402 (38%), Positives = 240/402 (59%), Gaps = 18/402 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS V+ AV +AGY + +P+Q + IP VL D+ A+TGTGKTA+F LP+L Sbjct: 1 MLFKDLCLSQPVLQAVENAGYHEASPVQAEAIPAVLSGKDLLVGAKTGTGKTAAFALPVL 60 Query: 61 TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L ++V ++ + L+L PTRELA QV ++F+KY K L A+ GG+ Q Sbjct: 61 DQLLNTSSQVQPDKKVIKALVLVPTRELAQQVNNSFKKYAKGTGLRSAVAYGGVGIGPQI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L++G D+L+ TPGR+LD + + IE L+ DEADRMLDMGF I+ + S +P Sbjct: 121 DQLKQGVDLLVATPGRLLDLCKKKAANLREIEFLIFDEADRMLDMGFRDEIKAVISKLPK 180 Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 RQ +LFSAT+ D + K S+N L P+ IEV+ S+A+ ++ + ++K Sbjct: 181 REQKARQVMLFSATLNDRIFKFSKNLLLKPQVIEVDQRGSSADNVDQ--IIYNCDPARKY 238 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 + L++++ + ++F K+ L L +QG IH + Q+ R LS FK Sbjct: 239 EITSYLIKNRGWAQV-MVFSQTKQGADKLQQYLSEQGLETDVIHADRTQKQREDALSQFK 297 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 ++++VA+D+AARG+DI ++ V N ++P +AE+YIHRIGRTGRAG G A +L+ +E Sbjct: 298 SQKLKVLVATDVAARGIDIAELPAVINLEMPFKAEDYIHRIGRTGRAGSQGVAISLLIEE 357 Query: 353 DIKHIDAIEKLIEKKV--DWLNGDLSSLNPPLEK-IDIAQHN 391 + ++AIE LI++++ WL G P L + I+I + N Sbjct: 358 ENYLLEAIEALIDERLPQQWLTG----FEPDLSREIEIKRSN 395 >gi|113969134|ref|YP_732927.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-4] gi|113883818|gb|ABI37870.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 420 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 219/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G++ PT IQ +T+P L++ D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LIL PTRELA+Q+ + L +A++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR++++ ++GK +++IL+IDEADRMLDMGF ++ I +Q Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ + + + L +P I+V+ P I H ++ K ALL L Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLADDKDHKIALLCHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q+ +K I+F + V +L L K G + G+++Q+ R + LS F +G + + Sbjct: 240 LK-QEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV NFD+P A+ YIHRIGRTGRAG G A +L D++ + Sbjct: 299 LLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 359 KIERYIEQ 366 >gi|126173575|ref|YP_001049724.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|125996780|gb|ABN60855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 472 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 222/376 (59%), Gaps = 15/376 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY + T +Q K IPL + D+ AQTGTGKTASF LP Sbjct: 1 MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALP-- 58 Query: 61 TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +LEK A R L++ PTRELA QV +N +KY + L + GG Sbjct: 59 -VLEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANM 117 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q K +E+G D+L+ TPGR+ D + +L ++++ LVIDEADRMLDMGF+ I+ + Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L+ QT+LFSAT +D +++++E L P+ + V ++ + ++ + +K Sbjct: 178 LIAPQHQTMLFSATYSDAVKQLAEKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L+ ++ + ++F + K++ +L L+ G + HG+ Q +R ++L FK Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFK 293 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 ++++VA+D+AARGLDI + V N ++P AE+YIHRIGRTGRAG G+A + V+ Sbjct: 294 ASKLRVLVATDVAARGLDIQALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPS 353 Query: 353 DIKHIDAIEKLIEKKV 368 D + + IE LIE+K+ Sbjct: 354 DDEMLAEIEALIEQKL 369 >gi|78777961|ref|YP_394276.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251] gi|78498501|gb|ABB45041.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM 1251] Length = 540 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 221/393 (56%), Gaps = 11/393 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL +++ +V DAG+ P+PIQ IP +L D+ G A TGTGKTA+F LP L Sbjct: 16 FDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPALNN 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + L++ PTRELA QV+D KYG+N + GG + Q ++RG Sbjct: 76 INPNDG----VGILVITPTRELATQVSDELFKYGRNIGARTVTVYGGSSYNRQIDLIQRG 131 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A V++ TPGR+LD + L I+V+DEAD MLDMGF+ I I S +P RQTLL Sbjct: 132 ASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLL 191 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++ ++E L NP+ I + +T I + + S++ + +L+ ++ Sbjct: 192 FSATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVI--EESERDDAIIRLMDAE 249 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K+ I+FC K V L + L G+ +HG+++QR R ++ FK ++++VA+ Sbjct: 250 ACQKS-IVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVAT 308 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+ + ++ HVFN+ +P E+Y+HRIGRTGRAG GKA TL+ + K + I+ Sbjct: 309 DVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKT 368 Query: 363 LIEKKVDWL----NGDLSSLNPPLEKIDIAQHN 391 + + DL ++N I +HN Sbjct: 369 KVGTTMTHAFVPSKNDLRAINLKSIATSIEEHN 401 >gi|148978426|ref|ZP_01814920.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3] gi|145962452|gb|EDK27731.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3] Length = 428 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 216/370 (58%), Gaps = 15/370 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F+DLGL ++ + + Y +PTPIQ + IP VL D+ A TG+GKTA+F LP+L Sbjct: 9 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 68 Query: 61 -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 L++ + LIL PTRELA QVAD+ + Y ++N + + GG+ Sbjct: 69 QIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 128 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + I L Sbjct: 129 TQMQSLRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 188 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT +++Q ++ L +P IEV S+ A T ++ F + +K Sbjct: 189 LPSKKQTLLFSATFPEQVQTLTHELLTDP--IEVQLQSANASTLVQRVF---EVEKGRKT 243 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ALL L+Q Q + +IF N K + +L L K+G HG+ Q SR +IL +FK Sbjct: 244 ALLAHLIQ-QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFK 302 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I +++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A +L+ E Sbjct: 303 SGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 362 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 363 DYHHFKIIEK 372 >gi|228991413|ref|ZP_04151368.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442] gi|228768343|gb|EEM16951.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442] Length = 433 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 223/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+V+ D+ G A+TGTGKT +FVLP+L Sbjct: 3 NFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ EK N+ V + GG Q +KL+ Sbjct: 63 KIDPESSDVQ---ALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R ++++N+ +LV+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ +++ P+ I++ + T I+ + T +K+ AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQGIIET-TDRTKQDALRHVMDR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + +IFC K+ L L+ G++ +HG++ Q R +++ +F++ IQ ++ Sbjct: 239 DQPFL--AVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D ++ I Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMYLKEI 356 Query: 361 EKLI 364 EK I Sbjct: 357 EKGI 360 >gi|168025828|ref|XP_001765435.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683285|gb|EDQ69696.1| predicted protein [Physcomitrella patens subsp. patens] Length = 535 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 208/376 (55%), Gaps = 29/376 (7%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++A+ LSP+++ AV GY KP+PIQ+ IP+ LQ+ DV GIA+TG+GKTA+FVLPMLT Sbjct: 115 NWAEGALSPELLKAVQKVGYTKPSPIQMAAIPIGLQQRDVIGIAETGSGKTAAFVLPMLT 174 Query: 62 ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + K P +++ PTRELA Q+ D K+ ++ V ++GG E Q Sbjct: 175 YISKLPPMTEEIEAEGPYAVVMAPTRELAQQIEDETVKFAHFLDIRVVSIVGGQSIEEQG 234 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL +G +V+I TPGR+LD R ++N +V+DEADRM+DMGF P + + +P Sbjct: 235 FKLRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPS 294 Query: 177 T-----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219 + R T +FSATM +++++ +L+NP + + T + I Sbjct: 295 SNLKPENEDAELDTHKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQ 354 Query: 220 CFVATYAQYSKKCALLQQLLQSQDTM--KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 + K+ L +L + + M K IIF N KK+ L L+K G+ V +HG Sbjct: 355 HVIMV-----KETEKLDRLCRVLNDMGDKTAIIFVNTKKSADTLSRQLDKNGYRVTTLHG 409 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 Q R L F+ +VA+D+A RG+DIPDV HV N+D+P E Y HRIGRTG Sbjct: 410 GKTQEQREVSLDGFRNKRFNCLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTG 469 Query: 338 RAGRHGKAFTLVAKED 353 RAG+ G A T + D Sbjct: 470 RAGKTGIATTFLTLHD 485 >gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE] gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE] Length = 471 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 217/370 (58%), Gaps = 11/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS + A+ G+ + TPIQ + IP L DV G AQTGTGKTA+F +PM+ Sbjct: 4 FQELSLSNATLKALAGMGFEEATPIQEQAIPAALAGKDVIGQAQTGTGKTAAFGIPMIEN 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ G ++ +++ PTRELA QVA+ + G+ + + GG + Q L+R Sbjct: 64 IDAGSGDIQ---GIVITPTRELAVQVAEELNRIGEFRGIHTLPIYGGQDIKRQINGLKRR 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR++DH R K + + NI +V+DEAD MLDMGFI I+ I P RQTL Sbjct: 121 PQIIVGTPGRLVDHMMRRKTISLKNIRTVVLDEADEMLDMGFIEDIEEILKRTPEGRQTL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 LFSAT+ ++K++E F+++P+ I + + S T E + V ++ C LL L Sbjct: 181 LFSATIPAPIRKLAERFMKDPQTIGIKSKSMTVSGTEQAYYEVPEKHKFEVLCRLLDVQL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + I+F K+ V L +L ++G+ IHG++ Q R ++ FKEGT +++ Sbjct: 241 PAL-----AIVFVRTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEVL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V HV+N D+P ++Y+HRIGRTGRAG+ G A T V ++ + Sbjct: 296 VATDVAARGLDISGVTHVYNLDIPQDPDSYVHRIGRTGRAGKKGTAITFVTPREMGLLRF 355 Query: 360 IEKLIEKKVD 369 IEK+ ++ Sbjct: 356 IEKITRHSIE 365 >gi|212633620|ref|YP_002310145.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3] gi|212555104|gb|ACJ27558.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3] Length = 458 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 224/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L +++ + G+ TPIQ +++P +L DV G A+TG+GKTA+F L +L Sbjct: 1 MPFSTLKLKTELLDNLTTMGFESMTPIQAQSLPAILNGEDVIGQAKTGSGKTAAFGLGLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ +L++ PTRELA QVA + +N+ V L GG+P Q L Sbjct: 61 HKLDVKRFRIQ---SLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +RG+L ++++ LV+DEADRMLDMGF ++ I VP RQ Sbjct: 118 EHGAHIIVGTPGRIIDHLDRGRLHLDDVHTLVLDEADRMLDMGFQVELEAIVEQVPVERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT ++++ ++++ + P ++V + T+ TI+ F + AL +LL Sbjct: 178 TLLFSATFPEQIKSIADSIMFKPVLVKVASTHETS-TIDQHFYEVGNNNDRMRAL--KLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q ++ ++FCN K+ ++ L+ GFSV A+HG+++QR R + L F ++ +M Sbjct: 235 LLQHRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIM 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N+ + E +IHRIGRTGRAG G A T + ED + Sbjct: 295 VATDVAARGLDIDALDAVINYHIAFDTEVHIHRIGRTGRAGSKGAAHTFYSDEDGYKVAL 354 Query: 360 IEKLIEKKV 368 +E +E+ + Sbjct: 355 LEDYLERDI 363 >gi|169630612|ref|YP_001704261.1| ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus ATCC 19977] gi|169242579|emb|CAM63607.1| Probable ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus] Length = 490 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 220/375 (58%), Gaps = 16/375 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++ A+ +AG P IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 8 FAQLGVRKEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPLLHR 67 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK-----NYNLTVALLIGGIPFEA 114 + G R PR L++ PTREL QV ++ K K + + TV + GG P+E Sbjct: 68 IATGVEDRPLNGTPRALVVVPTRELCIQVYEDLTKASKYLSAGDRDFTVVSIYGGRPYEP 127 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I +L Sbjct: 128 QIEALRAGADVVVGTPGRLLDLAQQGHLQLGGLAMLVLDEADEMLDLGFLPDIERILALA 187 Query: 175 PFT---RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYS 229 P RQ++LFSATM D + ++ F+ P I P SS ++ E +A Sbjct: 188 PSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDSTEQFVYRAHAL-- 245 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K L+ ++LQ+ D +IF K+ + L ++GF+V A+HG++ Q +R K L+ Sbjct: 246 DKIELVSRILQA-DGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALT 304 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +F+ G I ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G A TLV Sbjct: 305 SFRSGQINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLV 364 Query: 350 AKEDIKHIDAIEKLI 364 +DI I+K + Sbjct: 365 DWDDIARWQLIDKAL 379 >gi|313225950|emb|CBY21093.1| unnamed protein product [Oikopleura dioica] Length = 485 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 218/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59 + F + G+ ++ V AGYV PT IQ ++ P+ L D+ GIA+TG+GKT +FVLP + Sbjct: 55 LQFMEAGIPDYLMGTVTAAGYVTPTTIQSQSWPIALSGADMQGIARTGSGKTLAFVLPSI 114 Query: 60 LTILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + I+ + R P +IL PTRELA QV + E++GK + + GG AQ Sbjct: 115 IHIMAQPDLRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGA 174 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERGA +++ PGR+LD G+ ++ L++DEADRMLDMGF P I+ I + R Sbjct: 175 LERGAHIVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDR 234 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL+FSAT E+QK++ +F++ P +I + TA V + + K A+ Sbjct: 235 QTLMFSATWPKEIQKLASDFMKTPTQIFIGNQELTANPNIEQVVEVVSDFDK--AMRFNY 292 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q T ++F + K++ NL +++ AIHG+ DQR R ++L +F+ G I + Sbjct: 293 WFQQITSPKILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISV 352 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+G V N+D P++ E+Y+HRIGRT R + GK+ + + + KH Sbjct: 353 LVATDVAARGLDIDDIGTVINYDFPSQLEDYVHRIGRTARGEKKGKSISFITAKSAKHAS 412 Query: 359 AIEKLIEK 366 A+ KL+E+ Sbjct: 413 ALVKLLEQ 420 >gi|52145260|ref|YP_086717.1| ATP-dependent RNA helicase [Bacillus cereus E33L] gi|51978729|gb|AAU20279.1| ATP-dependent RNA helicase [Bacillus cereus E33L] Length = 481 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium symbiosum WAL-14673] gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium symbiosum WAL-14673] Length = 552 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 226/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L K++ AV D G+ +PIQ ++IPL L+ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 +K + + + +IL PTRELA QV++ + K + + V + GG Q + L+ Sbjct: 64 -QKVDPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKD 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH R L + ++ +V+DEAD ML+MGF+ ++ I S +P RQT+ Sbjct: 123 GIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +FSATM + ++++ F ++P+ ++V T + + + K ++ +LL Sbjct: 183 MFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPK--TKVEVMCRLLDM 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D K I+FCN K+ V +L L+ +G+ +HG++ Q R +++++F+ G +++A Sbjct: 241 YDP-KLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR GKAF+LV ++ + I+ Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREIQ 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RYCKTKI 366 >gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550] gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550] Length = 454 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T +TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET-TDRAKPDAL--RFIM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|291486518|dbj|BAI87593.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. natto BEST195] Length = 479 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 217/362 (59%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + +S ++ A+ GY +PT +Q IP L+R D+ +QTG+GKTASF +P+ + Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + P+ LIL PTRELA QV ++ G+ + + G F+ Q +L++ Sbjct: 64 ADWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 + +++ TPGR+LDH +G L ++ + LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 121 SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++K+S ++QNP+ IE+ T IEH + + K +LL+ +L ++ Sbjct: 181 FSATLPEDIEKLSRQYMQNPEHIEIKAAGLTTRNIEHAVIQVREE--NKFSLLKDVLMTE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC K++V L L+ G+ IHG + Q R +++ FK G + +VA+ Sbjct: 239 NP-DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ V N+D+P E+Y+HR GRTGRAG GKA + V + + + IE+ Sbjct: 298 DVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357 Query: 363 LI 364 I Sbjct: 358 YI 359 >gi|30265472|ref|NP_847849.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames] gi|47531039|ref|YP_022388.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|49188291|ref|YP_031544.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Sterne] gi|65317435|ref|ZP_00390394.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis str. A2012] gi|165872531|ref|ZP_02217164.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167636244|ref|ZP_02394547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|167641411|ref|ZP_02399661.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|170689199|ref|ZP_02880396.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|170708677|ref|ZP_02899116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|177651890|ref|ZP_02934473.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190568924|ref|ZP_03021826.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|218906634|ref|YP_002454468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|228930460|ref|ZP_04093460.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228949176|ref|ZP_04111444.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124957|ref|ZP_04254131.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201] gi|229600530|ref|YP_002869663.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] gi|254687105|ref|ZP_05150963.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. CNEVA-9066] gi|254724112|ref|ZP_05185897.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. A1055] gi|254733618|ref|ZP_05191335.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. Western North America USA6153] gi|254742162|ref|ZP_05199849.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. Kruger B] gi|254755928|ref|ZP_05207960.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. Vollum] gi|254761640|ref|ZP_05213660.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. Australia 94] gi|30260150|gb|AAP29335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Ames] gi|47506187|gb|AAT34863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. 'Ames Ancestor'] gi|49182218|gb|AAT57594.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Sterne] gi|164711754|gb|EDR17298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167510586|gb|EDR85982.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|167528359|gb|EDR91130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|170126459|gb|EDS95347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|170666842|gb|EDT17608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|172082594|gb|EDT67658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190559991|gb|EDV13974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|218536757|gb|ACK89155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|228658458|gb|EEL14124.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201] gi|228810459|gb|EEM56812.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829179|gb|EEM74816.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229264938|gb|ACQ46575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] Length = 481 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 425 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 155/392 (39%), Positives = 229/392 (58%), Gaps = 10/392 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L KV ++ + G+ PTPIQ + IPL L+ +D+ G AQTGTGKTA+F +P Sbjct: 11 MEFTFNQLDLKVQKSLEEMGFESPTPIQKEAIPLALEGYDIVGQAQTGTGKTAAFGIP-- 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+E +R R + ++L PTRELA QVA GKN ++ + GG+ E Q L+ Sbjct: 69 -IIENINSRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAYPIYGGVSIERQANILK 127 Query: 121 RGAD-VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG + +++ TPGR+ D +RG L ++ + V+DEAD+MLDMGFI I+ I S P +Q Sbjct: 128 RGRNQIVVGTPGRVKDLISRGLLKLDRVRFAVLDEADQMLDMGFIEDIEEILSKTPREKQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 TLLFSATM E++K+ +N+L++ K I+V T + + K L + Sbjct: 188 TLLFSATMPYEIRKLIDNYLKSGYKTIKVGKNLITPKVHQRIIFVKSEDKLKALEKLLKE 247 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q T I+F K++ + L+K+ + AIHG++ QR R ++ FKEG ++ Sbjct: 248 HQGTST----IVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGKVKT 303 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DVG V N+++P E+Y+HRIGRTGRAGR G A +LVA + + I Sbjct: 304 LVATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGTAISLVADNEKRRIY 363 Query: 359 AIEKLIEKKVDWLNG-DLSSLNPPLEKIDIAQ 389 I+ L K + DL L L D+ + Sbjct: 364 RIKGLKHIKPEKFKANDLRDLKQDLLSADVGK 395 >gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102] gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102] Length = 486 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 152/396 (38%), Positives = 226/396 (57%), Gaps = 13/396 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FADLG+ +V A GY PTPIQ K+IPL L DV G+A+TG+GKTA+F LP+L Sbjct: 63 FADLGVVESLVEATEALGYKHPTPIQEKSIPLALAGRDVIGLAETGSGKTAAFALPVLQA 122 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEK +++ PTRELAAQ+A FE G NL A+++GG+ Q L + Sbjct: 123 LLEKPSGLF----AVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGK 178 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR+LDH + K + +++ LV+DEADR+LDM F P I I +P R T Sbjct: 179 KPHVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHT 238 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSATM+ +++ + L++P R+ V N + +++ +A C L Sbjct: 239 YLFSATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNFLFIPHALKDVYCVHLINS 298 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q T I+F + L L GFS +HG + Q +R+ L+ F+ G+ + Sbjct: 299 FIGQTT----IVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDI 354 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP+V V N+D+P ++ YIHR+GRT RAG+ G+A +LV + D++ Sbjct: 355 LVATDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWL 414 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 IE + KK+D + + +++ AQ HAR Sbjct: 415 RIEASMGKKLDEFPTEKEEVMVFQARVEEAQ-RHAR 449 >gi|227818223|ref|YP_002818232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] gi|227005726|gb|ACP15469.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] Length = 481 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQVLVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|24372485|ref|NP_716527.1| ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1] gi|24346478|gb|AAN53972.1|AE015534_11 ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1] Length = 458 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 222/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L +++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 1 MAFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 61 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF P + I P RQ Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++Q +++ + NP ++ + TIE F S+ AL QLL Sbjct: 178 TLLFSATFPEQIQSIAKQIMYNPVMVKAAV-THEKNTIEQHFYQLDDDKSRMQAL--QLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN K+ + LE GFSV A+HG+++QR R + L F + ++ Sbjct: 235 LLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + VFN+ V E +IHRIGRTGRAG G A+T +D I Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354 Query: 360 IEKLIEKKV 368 +E+ +++++ Sbjct: 355 LEEYLDREI 363 >gi|28211174|ref|NP_782118.1| ATP-dependent RNA helicase [Clostridium tetani E88] gi|28203614|gb|AAO36055.1| ATP-dependent RNA helicase [Clostridium tetani E88] Length = 481 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 220/368 (59%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F G+S ++ A+L GY P+ +Q K IP+ ++ D+ ++TG+GKTASF +P Sbjct: 4 LSFKSFGISEDILEALLKLGYKNPSKVQQKVIPVAIKNKDIIVKSKTGSGKTASFGIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I E R P+ L+L PTREL QV ++ + G+ + + + G PF+ Q +L+ Sbjct: 62 -ICENVNLEERKPQALVLTPTRELCIQVKEDIKNIGRFKRIKCSAIFGKQPFKTQALELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + V++ TPGR LDH RG + ++ I+ ++DE D M +MGFI +++I +P R Sbjct: 121 QRTHVVVGTPGRTLDHIERGTIDLDKIKYFIVDEGDEMFNMGFIDQVESIMRKLPKKRVN 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ ++++K+ E ++++P IEVN T E I+H + + K LL ++L Sbjct: 181 MLFSATIPEKIEKLCEKYMKSPIMIEVNPEEFTEEKIQHIYYEI--EDKNKFDLLNKILI 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + IIFC ++NV L +E + + A+HG + Q R+ I++ FK G +V Sbjct: 239 TENP-DSSIIFCRTQENVNKLAKLMENKDYPCKALHGGMMQDKRIDIMNRFKRGEFMFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+DLAARG+D+ +V H+ N+D+P ENY+HR GRTGRAGR G A +LV + + I Sbjct: 298 ATDLAARGIDVENVTHIINYDIPMEKENYVHRTGRTGRAGREGCAISLVTPYEDRFFKQI 357 Query: 361 EKLIEKKV 368 E+ I K+ Sbjct: 358 EEYIGFKI 365 >gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567] gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567] Length = 582 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 144/397 (36%), Positives = 221/397 (55%), Gaps = 21/397 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+ + A+ G V P PIQ T+P+ L HD+ G A+TGTGKT F LP + Sbjct: 25 FADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQR 84 Query: 63 LEKGR--------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + GR + P+ LIL PTRELA QV ++ K N VA L GG+P+E Sbjct: 85 V-VGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEP 143 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q ++L +G +V++ TPGR++D + G L + ++ +V+DEAD MLD+GF+P ++ I + Sbjct: 144 QVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYL 203 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCA 233 P RQT+LFSATM + ++ ++ P I P A+T Y + K Sbjct: 204 PTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDE 263 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 +L ++L++ + +IF K++ + L +GF+ +HG+++Q +R + L F+ Sbjct: 264 MLGRILRAHGRGRT-VIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRN 322 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G + ++VA+D+AARG+D+ DV HV N VP + Y+HR GRTGRAG G A T V ED Sbjct: 323 GKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWED 382 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 I A +LI +D ++ P+E ++H Sbjct: 383 I----ARWRLINDALDL------GVSDPVETYSSSEH 409 >gi|294142598|ref|YP_003558576.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12] gi|293329067|dbj|BAJ03798.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12] Length = 438 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 153/427 (35%), Positives = 252/427 (59%), Gaps = 17/427 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L + A+ ++G+ TPIQ ++P++LQ+ D+ G AQTGTGKT +F++ Sbjct: 11 FADFSLHEGIKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFEH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T + +GR ++ PR +I+ PTRELA Q+A + K+ L V ++ GG +E Q K Sbjct: 71 LLTTPIPEGR-QLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYEVQRK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G D+LI T GRI+D+ +G + ++ I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 VLDKGIDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 +R +LFSAT++ ++Q+++ + + P+++ + T++ I E F Y +K L Sbjct: 190 KSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIF---YPSMDEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ +D + I+F N K + N+ L G V + G++ Q+ R++IL F G Sbjct: 247 LLSLIE-EDWPEKAIVFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG+ G + + +E Sbjct: 306 ELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGISISFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 ++ AIE+ I + N D L LE I H RK+N PQ +G R + + Sbjct: 366 LNLPAIEEYILHSIPVSNYDSEGL---LEDIPAPIRIH-RKHNSRPQGRSGSGRSNGSRN 421 Query: 415 SQKSHIP 421 ++ P Sbjct: 422 GNRNSAP 428 >gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase domain-containing protein [Clostridium phytofermentans ISDg] gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans ISDg] Length = 527 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 225/370 (60%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ L ++ A+ + GY + TPIQ + IP+VL+ D+ G AQTGTGKTA+F +P I Sbjct: 5 FDEMELQTPIIRAIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIP---I 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121 L+K +V+ + +IL PTRELA QV+D K+ K + A+ I GG Q + L+ Sbjct: 62 LQKIDPKVKGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLKA 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH R + + + ++ +DEAD ML+MGF I+ I +P RQTL Sbjct: 122 GVQIVIGTPGRVMDHMRRKTVKFDKVSMIALDEADEMLNMGFREDIETILKEMPEDRQTL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + ++ + ++ ++V T IE + + K +L +LL Sbjct: 182 LFSATMPQPIMDIARTYQKDATIVKVVKKELTVPKIEQYYYEVRPK--NKVDVLSRLLDM 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K ++FCN K+ V L +L +GF +HG++ Q+ R +++S+F+ G +++VA Sbjct: 240 Y-SPKRCLVFCNTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+DVP E Y+HRIGRTGRAGR G+AFTLV +++ + I+ Sbjct: 299 TDVAARGIDVDDVEAVFNYDVPQDEEYYVHRIGRTGRAGRTGRAFTLVVGKEVYKLRDIQ 358 Query: 362 KLIEKKVDWL 371 + + K+ + Sbjct: 359 RYCKTKIKVM 368 >gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977] gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977] Length = 528 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 210/367 (57%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS + + A+ + G PTPIQ + +P L DV G+A+TGTGKT +F LP+ Sbjct: 11 FRELGLSEQALAALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAER 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE R R PR L+L PTRELA QVA E + L + + GG + +Q L+RG Sbjct: 71 LEPSRTPGRPPRALVLAPTRELALQVAGELEWVAPH--LRIVTVYGGTGYGSQAAALKRG 128 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADV++ TPGR +D+ NRG L + + I V+DEAD ML MGF ++ + P RQTL+ Sbjct: 129 ADVVVATPGRAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGATPAERQTLM 188 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++ L+ P + V E + + +A A S + + L LL + Sbjct: 189 FSATLPGWAKRLVGRHLKEPTVVNVVQD----EEVSYREIAIEASPSARMSALSDLLHAH 244 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F KK + +L +G + A+HG+++Q R + + F+ G + ++VA+ Sbjct: 245 GP-ERAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVAT 303 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP+V V + +P RAE+Y HR GRTGRAGR G + + + + +E+ Sbjct: 304 DVAARGLDIPEVDLVVHLRLPERAESYQHRSGRTGRAGRSGTVIIFHSSRERRELGQLER 363 Query: 363 LIEKKVD 369 + +K + Sbjct: 364 AVGRKFE 370 >gi|88857246|ref|ZP_01131889.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2] gi|88820443|gb|EAR30255.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2] Length = 624 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 224/372 (60%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L V+ A+ + GY+ PTPIQ + IP +L DV G AQTGTGKTA+F LP+L+ Sbjct: 9 FDQLNLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLSR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ A ++ P+ L++ PTRELA QVA+ + K+ L VA + GG + Q + L R Sbjct: 69 LD---ADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLAR 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH +G+L ++N++ V+DEAD ML+MGF+ I+ I + +P Q Sbjct: 126 GPQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMA 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ-QLLQ 240 FSATM ++K++ FL +P +++ S I T + K L + + Sbjct: 186 FFSATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQK-SWTVGRIGKTVGLERIAEVV 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D M I+F + + + L L +GF A++G++ Q+ R +I+ K G I +++ Sbjct: 245 DYDAM---IVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILI 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLD+P + HV N+D+P+ +E+Y+HRIGRTGRAGR G+A + +++ + + Sbjct: 302 ATDVVARGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRL 361 Query: 361 EKLIEKKVDWLN 372 E++ E K++ + Sbjct: 362 ERITEGKIEVFD 373 >gi|262372452|ref|ZP_06065731.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205] gi|262312477|gb|EEY93562.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205] Length = 383 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 225/374 (60%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K +L + L+GG+ FE Q K Sbjct: 65 LLTNPVQEQRFRGE-PRALILAPTRELALQIESDAQHLTKFTDLHLVTLLGGVDFEKQKK 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+R D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I PF Sbjct: 124 MLDRNFVDIIVATPGRLIDFVEQKEVWLDKIEFLVIDEADRLLDMGFIPSVKRIVRFSPF 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ ++ +L P +E+ T +E + K L Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYV--VENKDKYKL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ++L+ ++ + +IF N++ V L L++ G+ V + G I Q R+K+L FK+G Sbjct: 242 LQEILR-EEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 301 KNNIMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 361 FYLPEIEKAIGKKL 374 >gi|300118846|ref|ZP_07056566.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus cereus SJ1] gi|298723814|gb|EFI64536.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus cereus SJ1] Length = 481 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|229156050|ref|ZP_04284149.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342] gi|228627371|gb|EEK84099.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342] Length = 454 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP++L D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLQ 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ ++V + T TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|254491416|ref|ZP_05104595.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans DMS010] gi|224462894|gb|EEF79164.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans DMS010] Length = 402 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 216/366 (59%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L ++ A D GY +PT IQ + IPL+L DV A TGTGKTA+FVLP+L Sbjct: 1 MQFEDLMLDESLLLAASDKGYKEPTLIQQEAIPLLLAGEDVLACAATGTGKTAAFVLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R+P+ LIL PTRELA Q+ GK +A++ GG AQ LE Sbjct: 61 QKLLDEPNHGRLPKALILAPTRELAFQIQHVIHHLGKANQPHIAMVTGGQAPTAQLAYLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D++I TPGR+L+ + ++ IE +VIDEADRMLDMG P + N+ + + QT Sbjct: 121 NGCDIVIATPGRLLNLVENEQADLSEIEFVVIDEADRMLDMGQGPDVANVLATITTAFQT 180 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238 LFSAT+ ++ + L N RIEV+ + A+ + + ++A ++ K ALL + Sbjct: 181 SLFSATLAGSGVELFANALLPNASRIEVDAANQYAQQVSQQVYLADNREH--KQALLAAV 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ D ++ +IFCN+K+ + L+ Q S +HG+ +Q R + F++G ++ Sbjct: 239 IKQTDC-ESALIFCNKKERAEEVSAFLQSQNISAQVVHGDFNQADRRERTRKFRQGKVKA 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+P V HV N+DVP R + YIHR+GRTGRAG+ G A LV D K++ Sbjct: 298 LVATDVAARGLDLPQVSHVINYDVPFRGDIYIHRVGRTGRAGQTGTAVNLVEPHDHKNLQ 357 Query: 359 AIEKLI 364 +E I Sbjct: 358 RVEHHI 363 >gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum WAL-14163] gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum WAL-14163] Length = 552 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 226/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L K++ AV D G+ +PIQ ++IPL L+ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 +K + + + +IL PTRELA QV++ + K + + V + GG Q + L+ Sbjct: 64 -QKVDPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKD 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH R L + ++ +V+DEAD ML+MGF+ ++ I S +P RQT+ Sbjct: 123 GIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +FSATM + ++++ F ++P+ ++V T + + + K ++ +LL Sbjct: 183 MFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPK--TKVEVMCRLLDM 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D K I+FCN K+ V +L L+ +G+ +HG++ Q R +++++F+ G +++A Sbjct: 241 YDP-KLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR GKAF+LV ++ + I+ Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREIQ 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RYCKTKI 366 >gi|31794389|ref|NP_856882.1| ATP-dependent RNA helicase RhlE [Mycobacterium bovis AF2122/97] gi|31619985|emb|CAD95329.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium bovis AF2122/97] Length = 527 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 217/381 (56%), Gaps = 22/381 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG ++V A+ + G +P IQ T+PL L DV G A+TG GKT +F +P+L Sbjct: 12 FAKLGARDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGK--------------NYNLTVAL 105 + G R PR L++ PTREL QV D+ GK L+V Sbjct: 72 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131 Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165 + GG P+E Q + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P Sbjct: 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191 Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVA 223 I+ I +P RQ++LFSATM D + ++ F+ P I P S+A + E Sbjct: 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 +A K L+ ++LQ++D +IF K+ + L ++GF+V A+HG++ Q + Sbjct: 252 AHAL--DKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 308 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R K L F+ G I ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G Sbjct: 309 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 368 Query: 344 KAFTLVAKEDIKHIDAIEKLI 364 A TLV +++ I++ + Sbjct: 369 VAVTLVDWDELPRWSMIDQAL 389 >gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917] gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917] Length = 603 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 147/398 (36%), Positives = 231/398 (58%), Gaps = 22/398 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G S ++ + GY P+PIQ P ++ D+ G AQTGTGKTA+F LP+L Sbjct: 45 FDGFGFSEALLRTLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 104 Query: 63 LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ +G P+ L+L PTRELA QVA++F+ Y + +L V + GG F +Q L+ Sbjct: 105 LQPEGPG----PQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGGSDFRSQIHSLK 160 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR++DH +G L +++ LV+DEAD ML MGFI ++ I +P RQ Sbjct: 161 RGVDVVVGTPGRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQV 220 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239 +LFSATM E++++S+ +L+ P I + T A I + C Q S K L ++L Sbjct: 221 VLFSATMPAEIRRLSKRYLREPAEITIKTQEKEARRIRQRCIT---LQNSHKLEALNRVL 277 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ T + IIF K + + +LE G V ++G++ Q R + + ++GT+ ++ Sbjct: 278 EAV-TGEGVIIFARTKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRKGTVNIL 336 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ +G V N+D+P +E Y+HRIGRTGRAGR G+A V + + ++ Sbjct: 337 VATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNN 396 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN 397 +E+ + ++ P++ A+ N AR +N Sbjct: 397 LERATGQPIE-----------PMQIPSNAEINQARLDN 423 >gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891] gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891] Length = 419 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 149/388 (38%), Positives = 224/388 (57%), Gaps = 9/388 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL ++ + + PT +Q IP VL+ DV AQTGTGKTA+F LP++ Sbjct: 4 DFQSLGLCSTLLTTLEKLNFKLPTEVQKHAIPHVLEGQDVLAGAQTGTGKTAAFGLPIIQ 63 Query: 62 -ILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 +LE R L+L PTRELA QV DN Y ++ + V GG Q + Sbjct: 64 RLLESETTRDIQSNDVLALVLVPTRELAQQVFDNITLYAQDTIIKVVTAYGGTSMNVQTR 123 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+LI TPGR+LDH + + + LV+DEADRMLDMGF+P I+ I Sbjct: 124 NLDQGCDILIATPGRLLDHLFCKNINLTKTQYLVLDEADRMLDMGFMPDIKRILKRCNEE 183 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+ FSAT ++ ++ L P ++V +STAET++ +K LL Sbjct: 184 RQTMFFSATFDKRIKTIAYKMLSEPVEVQVTPSNSTAETVKQMVYP--VDKKRKAELLAY 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ S++ + ++F K+ L L+ G +I+G+ Q +R K L +FK G ++ Sbjct: 242 LIGSRN-WQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVR 300 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++A+D+AARGLDI + V NFD+P +AE+Y+HRIGRTGRAG+ G A +L+++++ + Sbjct: 301 ALIATDVAARGLDIQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLL 360 Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLE 383 +AIE+L++ K+ +WL G SL +E Sbjct: 361 EAIERLLDGKLPQEWLEGFEPSLIEEVE 388 >gi|163749401|ref|ZP_02156649.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] gi|161330810|gb|EDQ01737.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] Length = 430 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 155/410 (37%), Positives = 226/410 (55%), Gaps = 11/410 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA L L+P ++ A+ + GY + T +Q + IP+ L D+ A+TGTGKTASF LP+L Sbjct: 1 MKFAALDLNPLLIDAIDECGYQQLTQVQSEVIPVALSGADLMACAETGTGKTASFALPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R LIL PTRELA QVA N +YG+ +L + GG Q K L Sbjct: 61 ERLLKEEQEYPCLRGLILTPTRELAIQVAANITRYGQFTSLKTLAVYGGANMNPQRKALN 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR+ D + L ++++ L+IDEADRMLDMGF+ I+ + SLV T Sbjct: 121 AGVDILVATPGRLFDFVGQHGLNLSDVTSLIIDEADRMLDMGFVRDIERVKSLVASQHVT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSAT +D+++ ++E L +P+ I V S A + ++ +K LL +L+ Sbjct: 181 HFFSATYSDQVKLLAEKMLISPQWINVAQTRSAASVEQEVYL---VDKRRKAELLSELI- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F K++ +L L G HG+ Q +R + L FK G +++MV Sbjct: 237 GRNNWQQVLVFATTKESAEHLNSELSLDGIKCGVFHGDRTQGARNRTLEEFKAGKLRVMV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V N ++P AE+YIHRIGRTGRAG G+A + V D + +D I Sbjct: 297 ATDVAARGIDIQALPLVINLELPYGAEDYIHRIGRTGRAGLTGRAISFVCPSDEEMLDEI 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 E LIE K+ + L PL R+ + FDRRK Sbjct: 357 ESLIELKLPRIVLPGYELGAPLPA-------RYRETQDVTTTKKKFDRRK 399 >gi|313148046|ref|ZP_07810239.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] gi|313136813|gb|EFR54173.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] Length = 647 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 226/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 15 FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 73 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K + R+P++L+L PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 74 --QKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 131 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + + + +V+DEAD ML+MGF I I + VP R T Sbjct: 132 RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILADVPQERNT 191 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L + K I + + + ++H +A+ K A L++++ Sbjct: 192 LLFSATMSPEIARISKNYLHDAKEITIGRKNESTSNVKHVVYTVHAK--DKYAALKRIVD 249 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+FC +K + L ++G++ ++HG + Q R ++ F+ +Q++V Sbjct: 250 YYPQI-YGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQILV 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 309 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 368 Query: 361 EKLIEKK 367 E++I KK Sbjct: 369 ERIIGKK 375 >gi|225445460|ref|XP_002285108.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 615 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 150/389 (38%), Positives = 218/389 (56%), Gaps = 21/389 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA++ L + + YVKPTPIQ IP+ + D+ AQTG+GKTA+F P++ Sbjct: 135 FAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICG 194 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +G AR+ P LIL PTREL+ Q+ + +K+ L V + GG P Q + Sbjct: 195 ILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFR 254 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--- 174 LERG D+L+ TPGR++D R ++ + I+ L +DEADRMLDMGF P I+ I + Sbjct: 255 NLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMP 314 Query: 175 -PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 P RQT+LFSAT +E+Q+++ +FL N + V S+ + I + + + K Sbjct: 315 PPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQ--RVEFVEDTDKRY 372 Query: 234 LLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 L LLQSQ T + ++F K+ V L L G + AIHG+ Q R + Sbjct: 373 HLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERA 432 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L +FK G +MVA+D+AARGLDIP V HV NFD+P ++Y+HRIGRTGRAG+ G A Sbjct: 433 LKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLATA 492 Query: 348 LVAKEDIKHIDAIEKLIEKK----VDWLN 372 ++ ++ +L+++ WLN Sbjct: 493 FFNDGNLSLAKSLVELMQESNQEVPSWLN 521 >gi|310824350|ref|YP_003956708.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1] gi|309397422|gb|ADO74881.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1] Length = 579 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 144/365 (39%), Positives = 217/365 (59%), Gaps = 12/365 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F LGLS + + AV A + PTPIQ + IP L DV G A TGTGKTA+++LP++ Sbjct: 4 SFKSLGLSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L A R P L+L PTREL Q+A +G+ LT A++ GG AQ + L + Sbjct: 64 RL----AGERGPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQ 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR+ D G ++ + +LV+DEADR L+MGF+P +Q I + +P RQTL Sbjct: 120 RPTLVLATPGRLADLLKEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSST--AETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT+ + + ++ L+ P R+EV TPS T A ++ + + S+K LL LL Sbjct: 180 LFSATLGHNVTRFAQEVLRKPVRVEV-TPSGTPAARAVQRLY---EVEASEKYPLLLSLL 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++D + ++F ++ + L++ G AIH + Q R + L F+ G + + Sbjct: 236 -AKDQLSV-LVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLD+ D+GHV NFD+P+ E+Y+HRIGRT RAG G+A T V D + + A Sbjct: 294 VATDIASRGLDVEDIGHVINFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRA 353 Query: 360 IEKLI 364 IE+++ Sbjct: 354 IERIV 358 >gi|148973902|ref|ZP_01811435.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3] gi|145965599|gb|EDK30847.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3] Length = 459 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ + L P+++ + GY + TPIQ ++P +L DV G +TG+GKTA+F L +L Sbjct: 6 FSSIALKPELLHTLDSLGYTEMTPIQALSLPTILNGKDVIGQGKTGSGKTAAFGLGVLQN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 66 LRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH +G++ ++ + LV+DEADRML+MGF + + P RQTL Sbjct: 123 GAHILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLEMGFQDALDAVIDAAPKERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++ V++ ++NP+ ++V + + +I+ F ++ AL LL Sbjct: 183 LFSATFPKQIKSVADRIMRNPEMVKVES-THDHSSIQQHFYKLEGSEARDDALELLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L F TI ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQNVTDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G A + +++++ + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDMPIE 367 >gi|217974178|ref|YP_002358929.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|217499313|gb|ACK47506.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 472 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 222/376 (59%), Gaps = 15/376 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY + T +Q K IPL + D+ AQTGTGKTASF LP Sbjct: 1 MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALP-- 58 Query: 61 TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +LEK A R L++ PTRELA QV +N +KY + L + GG Sbjct: 59 -VLEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANM 117 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q K +E+G D+L+ TPGR+ D + +L ++++ LVIDEADRMLDMGF+ I+ + Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L+ QT+LFSAT +D +++++E L P+ + V ++ + ++ + +K Sbjct: 178 LIAPQHQTMLFSATYSDAVKQLAEKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L+ ++ + ++F + K++ +L L+ G + HG+ Q +R ++L FK Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFK 293 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 ++++VA+D+AARGLDI + V N ++P AE+YIHRIGRTGRAG G+A + V+ Sbjct: 294 ASKLRVLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPS 353 Query: 353 DIKHIDAIEKLIEKKV 368 D + + IE LIE+K+ Sbjct: 354 DDEMLAEIEALIEQKL 369 >gi|294793457|ref|ZP_06758594.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44] gi|294455027|gb|EFG23399.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44] Length = 432 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 139/363 (38%), Positives = 220/363 (60%), Gaps = 6/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ +++ A+ G +PTPIQ ++IP+V + +DV AQTGTGKT +F+LP I Sbjct: 4 FKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++ V + LI+ PTREL Q++D ++ G N+ + LIGG EAQ ++L R Sbjct: 61 LQRVHTDVHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGRR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L ++ I +V+DEAD+ML MGF+P I+N+ RQ LL Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ D+++ +++ ++ P + T E+I+ + +K L ++++ Sbjct: 181 FSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPE--EKTQRLIKMIED- 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D I+FCN+++ + L + L G ++ +HG++ Q R +IL +F + Q++VA+ Sbjct: 238 DNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HV+N+DVP + YIHRIGRTGRAG G A T +D + IE+ Sbjct: 298 DIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIER 357 Query: 363 LIE 365 I+ Sbjct: 358 AIQ 360 >gi|294631256|ref|ZP_06709816.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14] gi|292834589|gb|EFF92938.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14] Length = 960 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 145/390 (37%), Positives = 221/390 (56%), Gaps = 21/390 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F +LG+ P+ A+ G P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 61 FRELGILPETAEALEAVGITTPFPIQEMTLPVALTGTDVIGQAKTGTGKTLGFGLPLLER 120 Query: 61 -TI---LEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 T+ +E GRA+ P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 121 VTVPADVEAGRAKPEALTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVVAIYGGRAY 180 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L+ G DV++ TPGR+LD + KL + +++ LV+DEAD MLD+GF+P ++ I Sbjct: 181 EPQVEALKNGVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIIG 240 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKK 231 ++P RQT+LFSATM + ++ ++ P I P T+ + Y A K Sbjct: 241 MLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFIYRAHNMDK 300 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ++ +IFC K+ +L L+++GF+ A+HG++ Q +R + L F Sbjct: 301 PEMVARILQAEG-RGLAMIFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAF 359 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TLV Sbjct: 360 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDW 419 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 +DI I K + DL +PP Sbjct: 420 DDIPRWQLINKAL---------DLGFSDPP 440 >gi|229917498|ref|YP_002886144.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b] gi|229468927|gb|ACQ70699.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b] Length = 481 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 225/371 (60%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ A+ Y PT +Q + IP L+R D+ AQTG+GKTA+F +P++ + Sbjct: 6 FTDYRLSDEITRALGIMKYESPTEVQQQVIPRALEREDLVVKAQTGSGKTAAFGIPVIEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + P+ L+L PTRELA QV ++ G+ + + G PF Q ++L++ Sbjct: 66 IDWAENK---PQVLVLTPTRELAVQVREDMTNIGRFKRIKATAVYGKEPFSKQREELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH R L ++ IE L+IDEAD ML+ GF+ ++ I +P R T++ Sbjct: 123 THIVVGTPGRVMDHIERETLSLDRIEYLIIDEADEMLNRGFLADVEKILQQLPKDRVTMV 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT +++++ + + P R+ + + TA TIEH + + ++K A+LQ + + Sbjct: 183 FSATFPQDIERLCQKHMNAPARVAIESTGMTASTIEHRLLPVH--RNEKLAVLQDITVVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + +IFC K+NV + L+K G+S +HG ++Q R +++ FK G + +VA+ Sbjct: 241 NP-DSCMIFCRTKENVDTVYAELDKAGYSAERLHGGLEQEDRFAVMNGFKMGNFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+D+ +V V N+DVP E+Y+HR GRTGRAG+ G A TL+ +++ + I AIE Sbjct: 300 DVAARGIDVDNVELVINYDVPVEKESYVHRTGRTGRAGKQGTAITLMTRQEERLIGAIES 359 Query: 363 LIEKKVDWLNG 373 ++ ++ ++ Sbjct: 360 YVQFEIPMIDA 370 >gi|145294934|ref|YP_001137755.1| hypothetical protein cgR_0880 [Corynebacterium glutamicum R] gi|140844854|dbj|BAF53853.1| hypothetical protein [Corynebacterium glutamicum R] Length = 424 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/408 (37%), Positives = 222/408 (54%), Gaps = 22/408 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LG++ ++ A+ G + IQ T+P+ L HD G A+TG GKT F +P+L Sbjct: 10 FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDR 69 Query: 62 ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + PR L++ PTRELA QV D+ ++ N L + GG P+E Q L Sbjct: 70 VFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDAL 129 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G DV++ TPGR+LD RG L ++ + ILV+DEAD MLD+GF+P I+ I + Q Sbjct: 130 KVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQ 189 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++ +FL P I T ++A V A K A+ ++L Sbjct: 190 TMLFSATMPGAILTLARSFLNKPVHIRAETSDASATHKTTKQVVFQAHKMDKEAITAKIL 249 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q++D K IIF K+ + L +GFSV ++HG++ Q +R K L+ F+ G I ++ Sbjct: 250 QAKDRGKT-IIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDIL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV HV N+ P+ Y+HRIGRTGRAG +G A TLV ++ Sbjct: 309 VATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLVGYDETLKWTV 368 Query: 360 IEKLIEKKVDWLNGDLSSLNPP---------LEKIDIAQHNHARKNNP 398 I+ +E L NPP LE +DI + R P Sbjct: 369 IDNELE---------LGQPNPPQWFSTSPELLEALDIPEGVTERVGPP 407 >gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303] gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303] Length = 636 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 223/373 (59%), Gaps = 9/373 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F G S ++ + + GY +P+PIQ IP ++ D+ G AQTGTGKTA+F LP++ Sbjct: 84 EFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIE 143 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ +R P+ L+L PTRELA QVAD+F Y + +L V + GG F +Q L+ Sbjct: 144 RLQDHGSR---PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLK 200 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR++DH +G L + + LV+DEAD ML MGFI ++ I +P RQ Sbjct: 201 RGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPKERQM 260 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239 +LFSATM E++++S+ +L P I + + A I + C Q S K L+++L Sbjct: 261 VLFSATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITL---QNSHKLEALRRVL 317 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ T + IIF K + + +LE G V ++G++ Q R + + ++G++ ++ Sbjct: 318 EAF-TGEGVIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKGSVNIL 376 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + V N+D+P +E Y+HRIGRTGRAGR G+A V + + + Sbjct: 377 VATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGG 436 Query: 360 IEKLIEKKVDWLN 372 E+ + + ++ ++ Sbjct: 437 FERAVGQPIEPMD 449 >gi|229161413|ref|ZP_04289395.1| ATP-dependent RNA helicase [Bacillus cereus R309803] gi|228622053|gb|EEK78897.1| ATP-dependent RNA helicase [Bacillus cereus R309803] Length = 454 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 223/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP+++ D+ G A+TGTGKT +FVLP+L Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 66 KIDPESSDVQ---ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ ++V + T TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L L+ +G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931] gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931] Length = 580 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 144/397 (36%), Positives = 221/397 (55%), Gaps = 21/397 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+ + A+ G V P PIQ T+P+ L HD+ G A+TGTGKT F LP + Sbjct: 25 FADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQR 84 Query: 63 LEKGR--------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + GR + P+ LIL PTRELA QV ++ K N VA L GG+P+E Sbjct: 85 V-VGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEP 143 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q ++L +G +V++ TPGR++D + G L + ++ +V+DEAD MLD+GF+P ++ I + Sbjct: 144 QVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYL 203 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCA 233 P RQT+LFSATM + ++ ++ P I P A+T Y + K Sbjct: 204 PTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDE 263 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 +L ++L++ + +IF K++ + L +GF+ +HG+++Q +R + L F+ Sbjct: 264 MLGRILRAHGRGRT-VIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRN 322 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G + ++VA+D+AARG+D+ DV HV N VP + Y+HR GRTGRAG G A T V ED Sbjct: 323 GKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWED 382 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 I A +LI +D ++ P+E ++H Sbjct: 383 I----ARWRLINDALDL------GVSDPVETYSSSEH 409 >gi|255010251|ref|ZP_05282377.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] Length = 636 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 226/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K + R+P++L+L PTREL Q+A + Y K + L V + GG ++Q + L+ Sbjct: 63 --QKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + + + +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+N+L + K I + + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEIARISKNYLHDAKEITIGRKNESTSNVKHVVYTVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+FC +K + L ++G++ ++HG + Q R ++ F+ +Q++V Sbjct: 239 YYPQI-YGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|114048723|ref|YP_739273.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-7] gi|113890165|gb|ABI44216.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 420 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 219/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G++ PT IQ +T+P L++ D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LIL PTRELA+Q+ + L +A++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR++++ ++GK +++IL+IDEADRMLDMGF ++ I +Q Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ + + + L +P I+V+ P I H ++ K ALL L Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLADDKDHKFALLCHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q+ +K I+F + V +L L K G + G+++Q+ R + LS F +G + + Sbjct: 240 LK-QEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV NFD+P A+ YIHRIGRTGRAG G A +L D++ + Sbjct: 299 LLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 359 KIERYIEQ 366 >gi|261402374|ref|YP_003246598.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius M7] gi|261369367|gb|ACX72116.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius M7] Length = 404 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 227/373 (60%), Gaps = 14/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 M+F +L LS + AV + G+ KPT IQ K IPL L ++ A+TG+GKTASF LP+ Sbjct: 6 MNFEELNLSENTLNAVRNKGFEKPTDIQTKVIPLFLNGEKNIVAQARTGSGKTASFALPL 65 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++ +G + +IL PTRELA QVAD N NL + + GG P + Q K L Sbjct: 66 IELINEGEG----IKAIILTPTRELAIQVADEINSLKGNKNLKIVKVYGGTPIQPQIKYL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + A++++ TPGR+LDH NRG L + ++E ++DEAD ML+MGFI ++ I + R+ Sbjct: 122 -KNANIVVGTPGRVLDHINRGTLNLKDVEYFILDEADEMLNMGFIDDVEKILNACNKNRR 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM E+ +++ ++ + + + + IE F+ +K+ L ++L Sbjct: 181 ILLFSATMPVEILNLAKKYMNDYEFVRAKRNAD----IEQTFIE--VDENKRFETLCRIL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ G++FC KK+ +L + L GF AIHG++ Q R K++ FK+ I+++ Sbjct: 235 RDRNFY--GLVFCKTKKDTKDLANMLRDIGFKAGAIHGDLKQHQREKVVRLFKQKRIKIL 292 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+ +RG+D+ D+ HV N+ +P E Y+HRIGRTGRAG+ GKA +++ +++ + + Sbjct: 293 IATDVMSRGIDVNDLSHVVNYHLPQTPEAYMHRIGRTGRAGKKGKAISIINRKEYRKLKH 352 Query: 360 IEKLIEKKVDWLN 372 IE+ ++ K+ N Sbjct: 353 IERTMKLKIKKYN 365 >gi|160874482|ref|YP_001553798.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|304409447|ref|ZP_07391067.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307303805|ref|ZP_07583558.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|160860004|gb|ABX48538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|304351965|gb|EFM16363.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306912703|gb|EFN43126.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|315266720|gb|ADT93573.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 472 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 222/376 (59%), Gaps = 15/376 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY + T +Q K IPL + D+ AQTGTGKTASF LP Sbjct: 1 MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALP-- 58 Query: 61 TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +LEK A R L++ PTRELA QV +N +KY + L + GG Sbjct: 59 -VLEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANM 117 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q K +E+G D+L+ TPGR+ D + +L ++++ LVIDEADRMLDMGF+ I+ + Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L+ QT+LFSAT +D +++++E L P+ + V ++ + ++ + +K Sbjct: 178 LIAPQHQTMLFSATYSDAVKQLAEKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L+ ++ + ++F + K++ +L L+ G + HG+ Q +R ++L FK Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFK 293 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 ++++VA+D+AARGLDI + V N ++P AE+YIHRIGRTGRAG G+A + V+ Sbjct: 294 ASKLRVLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPS 353 Query: 353 DIKHIDAIEKLIEKKV 368 D + + IE LIE+K+ Sbjct: 354 DDEMLAEIEALIEQKL 369 >gi|165933600|ref|YP_001650389.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa] gi|165908687|gb|ABY72983.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa] Length = 414 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 219/370 (59%), Gaps = 15/370 (4%) Query: 1 MDF--ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58 MD+ + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP Sbjct: 1 MDYIMKNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLP 60 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++ K + LIL PTRELA Q+ K +Y + A+LIGG P Q + Sbjct: 61 LIDSFIKNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 115 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++ V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P R Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQ 236 Q L+FSATM + VS+ +L NP RI V + A I E V+ ++S AL + Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTK 232 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL + ++ IIF K++ L L+ + + AIHG++ QR R +++ +F++ Sbjct: 233 QLGHREGSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNH 289 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++MVA+D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ Sbjct: 290 RIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 349 Query: 357 IDAIEKLIEK 366 AI++L+ K Sbjct: 350 WRAIDRLVNK 359 >gi|312892436|ref|ZP_07751930.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM 18603] gi|311295070|gb|EFQ72245.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM 18603] Length = 615 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 136/375 (36%), Positives = 234/375 (62%), Gaps = 10/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F+ LG+ +V A+ D G+ PTPIQ ++IP++L +D G+AQTGTGKTA+F LP+L Sbjct: 4 FSQLGIRHDIVNAITDLGFENPTPIQEQSIPVLLTGSNDFVGLAQTGTGKTAAFGLPLLE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +L+ P+ LIL PTREL Q+ ++ + Y KN N+ V + GG Q ++++ Sbjct: 64 LLD---FEQNHPQALILCPTRELCLQITNDLKNYSKNMSNVNVVAVYGGANISDQLRQIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD NR + +++ +V+DEAD ML+MGF I +I S P ++T Sbjct: 121 RGVQIVVATPGRMLDIINRKAINFSDVNYVVLDEADEMLNMGFQEDIDSILSTTPDDKKT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E++++++ ++ +P + + ++ IEH + A+ K A ++++ Sbjct: 181 WLFSATMPSEVRRIAKKYMTDPFELTMGEKNTGNVNIEHEYYIVRAR--DKYAAFKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+FC K + +L K G++ ++HG++ Q+ R K++ ++E ++QL++ Sbjct: 239 FNPEIF-GIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQLLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HV N+ +P+ ENY HR GRT RAG+ G + ++ +++ I I Sbjct: 298 ATDVAARGIDVNDVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSKELGKIRQI 357 Query: 361 EKLIEKKVDWLNGDL 375 E++I KK ++ G++ Sbjct: 358 ERVIGKK--FIKGEI 370 >gi|229005142|ref|ZP_04162865.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4] gi|228756117|gb|EEM05439.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4] Length = 433 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 223/364 (61%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ K IP+V+ D+ G A+TGTGKT +FVLP+L Sbjct: 3 NFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ EK N+ V + GG Q +KL+ Sbjct: 63 KIDPESSDVQ---ALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R ++++N+ +LV+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ +++ P+ I++ + T I+ + T +K+ AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQRVIET-TDRAKQDALRHVMDR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + +IFC K+ L L+ G++ +HG++ Q R +++ +F++ IQ ++ Sbjct: 239 DQPFL--AVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D ++ I Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMYLKEI 356 Query: 361 EKLI 364 EK I Sbjct: 357 EKGI 360 >gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2] Length = 489 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 159/446 (35%), Positives = 243/446 (54%), Gaps = 34/446 (7%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DFA+LG++ +V A+ G P PIQ T+P+ L D+ G A+TGTGKT F +P+L Sbjct: 7 DFAELGVAGPIVAALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQ 66 Query: 62 IL----EKGRA---------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102 + E G A R+P+ L++ PTRELA QVA + ++ Sbjct: 67 RVVGKNEDGAAPADPENTPEFVSDSTETRLPQALVVVPTRELAKQVAADLVTASTQRDID 126 Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162 + + GG+ F+ Q KKL+ G DV++ TPGR+LD + R L ++ + +V+DEAD MLD+G Sbjct: 127 IMTIYGGMDFDPQIKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLG 186 Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222 F+P ++ I + VP RQT+LFSATM + ++ ++ P I + + ++ Sbjct: 187 FLPDVEKIINAVPAHRQTMLFSATMPGAVITLARRYMSRPTHIRAHDNEDLSLLGKNTEQ 246 Query: 223 ATYAQYS-KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 Y +S K L+ ++LQ++ + IIF K+ L L +GF V +HG++ Q Sbjct: 247 LVYRAHSMDKSELVARMLQAEGRGRT-IIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQ 305 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 R K L +F+EG + ++VA+D+AARG+DI DV HV N+ P+ + Y+HRIGRTGRAG Sbjct: 306 AQREKALKSFREGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGN 365 Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 G A TLV +D+ I K + L+ D P E + H A + IP+ Sbjct: 366 TGIAVTLVDWDDMPRWRLINKAL-----GLDHD-----EPAETYSTSPHFFA--DLSIPK 413 Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEK 427 + G RR++ S H K+SE+ Sbjct: 414 GTKGRLRRQQTEESD-DHAGPKKSEQ 438 >gi|311032368|ref|ZP_07710458.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. m3-13] Length = 481 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/433 (32%), Positives = 246/433 (56%), Gaps = 32/433 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +V A+ Y+KPT +Q + IP L + D+ +QTG+GKTA+F +P+ + Sbjct: 5 FQQFNLGEDIVKALKSLNYLKPTNVQEEVIPKALAKSDIIVKSQTGSGKTAAFAVPLCDL 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + P+ L+L PTRELAAQV D+ G+ + + G F+ Q +L++ Sbjct: 65 VHWEENK---PQALVLTPTRELAAQVKDDITNIGRYKRVKATAIYGKQSFQRQKLELKQK 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 + +++ TPGR+LDH +G L ++ +E LVIDEAD ML+MGFI +++I ++P +R T+L Sbjct: 122 SHIVVGTPGRVLDHLEKGTLDVSRLEYLVIDEADEMLNMGFIDQVESIIQMLPKSRVTML 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ NP IE+ + T + IEH + + KK LL+ + + Sbjct: 182 FSATLPEDIKQLSNQYMTNPVFIEIESGGLTTDRIEHIWYEV-GEGEKKFLLLKDITVVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+FC ++ V + +L + G+ +HG + Q R +++ FK G + ++A+ Sbjct: 241 NP-DSCIVFCATQEEVDKVHRNLHRAGYPCGKLHGGLVQEDRFSVMNAFKRGEFRYLIAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RG+DI D+ V N+D+P+ E ++HRIGRT RAG+ GKA TL++ + H++ IE Sbjct: 300 DVASRGIDIEDISLVINYDIPSDKERFVHRIGRTARAGKSGKAITLISTSEHHHLEEIE- 358 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPL 422 D++ +S P K + + T F + +N P+ Sbjct: 359 ------DFIGIKISRAEAP-------------KREAVARAETSFLVKLENR-------PI 392 Query: 423 KESEKISKLQQDI 435 K+ K +KL+Q+I Sbjct: 393 KKENKGAKLEQNI 405 >gi|170720088|ref|YP_001747776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida W619] gi|169758091|gb|ACA71407.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619] Length = 483 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 141/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS +++ A+ D G+ TPIQ + + L+ D G AQTGTGKTA+F++ +++ Sbjct: 96 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGKDAIGRAQTGTGKTAAFLISIISQ 155 Query: 63 LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L++ + PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 156 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKT 215 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG + ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 216 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 275 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + +P +E+ + +ET+E A S K LL Sbjct: 276 SERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASETVEQHVFAVAG--SDKYKLL 333 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ +Q+ + ++F N+K V + L + G + + G++ Q R++ L +F+EG Sbjct: 334 YNLV-TQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 392 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 393 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 452 Query: 356 HIDAIEKLIEKKV 368 + AIE+L+ +K+ Sbjct: 453 QLPAIEELLGRKI 465 >gi|320330567|gb|EFW86546.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330873565|gb|EGH07714.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. glycinea str. race 4] Length = 442 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 218/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G +VL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVEVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P IEV+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|152999859|ref|YP_001365540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|151364477|gb|ABS07477.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] Length = 472 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 222/376 (59%), Gaps = 15/376 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY + T +Q K IPL + D+ AQTGTGKTASF LP Sbjct: 1 MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALP-- 58 Query: 61 TILEKGRARVRMP--------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +LEK A R L++ PTRELA QV +N +KY + L + GG Sbjct: 59 -VLEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANM 117 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q K +E+G D+L+ TPGR+ D + +L ++++ LVIDEADRMLDMGF+ I+ + Sbjct: 118 NPQRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKR 177 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L+ QT+LFSAT +D +++++E L P+ + V ++ + ++ + +K Sbjct: 178 LIAPQHQTMLFSATYSDAVKQLAEKMLNEPQWVNVADTTTASTVVQEVY---RVDKRRKA 234 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L+ ++ + ++F + K++ +L L+ G + HG+ Q +R ++L FK Sbjct: 235 ELLSELV-GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFK 293 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 ++++VA+D+AARGLDI + V N ++P AE+YIHRIGRTGRAG G+A + V+ Sbjct: 294 ASKLRVLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPS 353 Query: 353 DIKHIDAIEKLIEKKV 368 D + + IE LIE+K+ Sbjct: 354 DDEMLAEIEALIEQKL 369 >gi|307564611|ref|ZP_07627147.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS 21A-A] gi|307346681|gb|EFN91982.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS 21A-A] Length = 613 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 232/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S + A+ + G+ P P+Q + IP +L R+DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSEDIRKAIEEQGFEYPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R + + ++L PTREL Q+AD+ + + K +L +A + GG EAQ K+L+ Sbjct: 64 RIDTSR---KETQAIVLSPTRELCLQIADDLKDFSKYIPHLHIAAVYGGTSIEAQIKELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D +RGK + N+ +V+DEAD ML+MGF I I S VP R T Sbjct: 121 RGVQIIVATPGRLIDLMHRGKAKLENVCNIVLDEADEMLNMGFQDSITEILSGVPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ ++++V++ +L + K I V + + AE++ H + A+ K L++L+ Sbjct: 181 LLFSATMSKDVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAK--DKYLALKRLVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+FC K + L K G++ A+HG++ Q+ R + F+ Q++V Sbjct: 239 FYPKI-YAIVFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ ++ HV N+ +P+ ENY HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSIAIIHCREKYKVRNI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 E++I K ++++G L S Sbjct: 358 ERVIGK--EFVDGTLPS 372 >gi|258546120|ref|ZP_05706354.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC 15826] gi|258518545|gb|EEV87404.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC 15826] Length = 444 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 155/423 (36%), Positives = 237/423 (56%), Gaps = 16/423 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L + P + A+ D TPIQ KT+PL L HDV G+AQTGTGKTA+F++ + Sbjct: 11 FSSLPIHPAIQEALEDNRLTHTTPIQEKTLPLTLGGHDVMGLAQTGTGKTAAFLISLYHY 70 Query: 63 LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + P ++L PTRELA Q+ + ++ G L + GG+ E Q LE Sbjct: 71 LLTNPVHPKAKGPWAIVLAPTRELAVQIKKDADQIGAYTGLNSLAIYGGVSMEHQRNLLE 130 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FT 177 D++I TPGRI+D + + + + NIE+ V+DEADRM D+GFI ++ + +P Sbjct: 131 NAPIDIIIGTPGRIIDLYKQKIIRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAHE 190 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R LLFSATM ++Q+++ + P+ + + + +TA+ I T +K LL Sbjct: 191 RLNLLFSATMAQKVQELAYEYFNAPETVSIESGQATADNITQILYHTAKH--EKTPLLIG 248 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++D +IF N K+++ L LE G+ A+ G+I Q+ R KI+ +F+ G + Sbjct: 249 LL-NRDKPARSMIFLNTKRDLERLSVVLEANGYPNAALSGDIPQKKREKIIKDFQSGAVN 307 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGL IPDV HVFN+D+P AE+Y+HRIGRT RAG G A + +E + + Sbjct: 308 IVVATDVAARGLHIPDVTHVFNYDLPQVAEDYVHRIGRTARAGASGTAISFACEEYVYSL 367 Query: 358 DAIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNH-----ARKNNPIPQKSTGFDRR 409 IE I K+ D L+ + PP E+ A + AR N P+ + R Sbjct: 368 PEIEHYIHNKLPVFPLDEELLADVIPPSEEALRALNEQKAERLARNGNRQPRGNKPESHR 427 Query: 410 KKN 412 ++N Sbjct: 428 RRN 430 >gi|253991618|ref|YP_003042974.1| ATP-dependent RNA helicase RhlB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783068|emb|CAQ86233.1| ATP-dependent RNA helicase [Photorhabdus asymbiotica] Length = 428 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 157/422 (37%), Positives = 238/422 (56%), Gaps = 17/422 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ + G+ TPIQ T+P ++ DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFHY 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L KGR + PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLTHPIAKGR-QTNQPRALIMAPTRELAVQIYSDAEDLAQTTGLKMGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE G D+LI T GR++D+ +G + +N ++++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPSA 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 R LLFSAT++ +++++ + + + +EV T I E F Y +K L Sbjct: 190 NERMNLLFSATLSYRVRELAFEQMNHAEYVEVEPLQKTGHRIREELF---YPSNEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 247 LQTLLE-EEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 306 NIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYA 365 Query: 355 KHIDAIEKLIEKKVDW----LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 ++ AIE I+ ++ N L L P + NH R+NN + +T + RK Sbjct: 366 LNLPAIEDYIQHQIPVSKYNSNALLKDLPVPKRRHRSRSGNHQRRNNLSHRNNTPRNNRK 425 Query: 411 KN 412 ++ Sbjct: 426 RS 427 >gi|114046940|ref|YP_737490.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113888382|gb|ABI42433.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 427 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 208/369 (56%), Gaps = 16/369 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA+LG+ + + + Y PTPIQ TIP VL DV A TG+GKTA+F +P+L Sbjct: 10 SFAELGIIAPLCNRLTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQ 69 Query: 62 IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 L EK +VR L+L PTRELA QVAD+F Y ++N L + GG+ Sbjct: 70 RLFEAKTAEKSAGQVR---CLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L GADVL+ TPGR+LD L +N + LV+DEADRML +GF + + Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEA 186 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P +QTLL+SAT +E++ ++ L P +E + S TIE + +K A Sbjct: 187 LPAKKQTLLYSATFPEEVRALTAKLLHQP--LEYHLQSEQESTIEQRVITV--NREQKTA 242 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L++ Q +IF + K +L L K+G S HG+ Q +R ++L FK Sbjct: 243 LLAHLIK-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKS 301 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I +++A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ E+ Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361 Query: 354 IKHIDAIEK 362 H IEK Sbjct: 362 YHHFGVIEK 370 >gi|196036086|ref|ZP_03103486.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|195991253|gb|EDX55221.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] Length = 481 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFVRQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L++ + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|157963312|ref|YP_001503346.1| ATP-dependent RNA helicase DbpA [Shewanella pealeana ATCC 700345] gi|157848312|gb|ABV88811.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 469 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 219/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L +++ + GY TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 14 FSSLKLKTELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHK 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ R R++ L+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 74 LDVKRFRIQ---CLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEH 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +RG+L + N+ LV+DEADRML+MGF ++ I +P RQTL Sbjct: 131 GAHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMDRMPIERQTL 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++Q +++ + P ++V + +T+ TIE F + AL LLQ Sbjct: 191 LFSATFPEQIQSIADKIMFKPVLVKVASTHATS-TIEQHFYEVGNNNDRMRALKLLLLQY 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN K+ ++ L+ GFSV A+HG+++QR R + L F ++ +MVA Sbjct: 250 RP--ESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N+ V E +IHRIGRTGRAG G A T ED I +E Sbjct: 308 TDVAARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYNDEDGYKIALLE 367 Query: 362 KLIEKKV 368 +E+ + Sbjct: 368 DYLERDI 374 >gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045] gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045] Length = 848 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 215/373 (57%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F +LG+ P+ A+ G + P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 44 FRELGILPETAEALEAVGILNPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLER 103 Query: 61 ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +E GRAR P+ L++ PTREL QV ++ GK N+ V + GG + Sbjct: 104 VSVPADVEAGRARPEDVTNTPQALVVVPTRELCVQVTNDLLTAGKVRNVRVTAIYGGRAY 163 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL + ++ LV+DEAD MLD+GF+P ++ I Sbjct: 164 EPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLAHVRCLVLDEADEMLDLGFLPDVEKIIG 223 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KK 231 ++P RQT+LFSATM + ++ ++ P I +P T+ + Y +S K Sbjct: 224 MLPARRQTMLFSATMPGAVISLARRYMSQPTHIRATSPEGEGVTLANIKQFVYRAHSMDK 283 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ ++LQ++ +IFC K+ ++ L+++GF+ A+HG++ Q +R + L F Sbjct: 284 PEMIARILQAEG-RGLAMIFCRTKRTAADIAEQLQQRGFASGAVHGDLGQGAREQALRAF 342 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G + ++V +D+AARG+D+ V HV N+ P + Y+HR GRTGRAG G A T V Sbjct: 343 RNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRTGRTGRAGASGTAITFVDW 402 Query: 352 EDIKHIDAIEKLI 364 +DI I K + Sbjct: 403 DDIPRWQLINKAL 415 >gi|73996628|ref|XP_863206.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 11 [Canis familiaris] Length = 811 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 151/417 (36%), Positives = 229/417 (54%), Gaps = 42/417 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L+ Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLSG 452 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E+ + P +IL PTRELA Q+ + K+GK + +IGGI E Q +L G Sbjct: 453 IEES---DQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMG 509 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P + Sbjct: 510 CEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPD 569 Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216 RQT++F+ATM +++++ ++L+ P + + + E Sbjct: 570 TDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHER 629 Query: 217 IEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +E F+ + ++ KK A+L+Q IIF NQKK L SLEK G++ C Sbjct: 630 VEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKMGYNACT 684 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+YIHRIG Sbjct: 685 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 744 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391 RTGRAG+ G A T + KED +++ I L +SS P L AQH Sbjct: 745 RTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHK 795 >gi|229030176|ref|ZP_04186236.1| ATP-dependent RNA helicase [Bacillus cereus AH1271] gi|228731134|gb|EEL82056.1| ATP-dependent RNA helicase [Bacillus cereus AH1271] Length = 446 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP+++ D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFNFD+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|119773890|ref|YP_926630.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B] gi|119766390|gb|ABL98960.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B] Length = 467 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 221/371 (59%), Gaps = 11/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L L +++ + GY + TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 10 LAFSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 69 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R R++ TL+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 70 NKLDVKRFRIQ---TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH R +L ++N+ +LV+DEADRML+MGF P + I + P RQ Sbjct: 127 EHGAHIIVGTPGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIARSPRERQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--Q 237 TLLFSAT +++Q +++ + NP ++V T + +H + A +Q Q Sbjct: 187 TLLFSATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFY-----HLEDDGARMQALQ 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + ++ ++FCN K+ + L GFSV A+HG+++QR R + L F + Sbjct: 242 LLLLEHKPESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSAC 301 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + VFN+ V + E +IHRIGRTGRAG G A+T +D I Sbjct: 302 VLVATDVAARGLDIDALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKI 361 Query: 358 DAIEKLIEKKV 368 +E+ +E+ + Sbjct: 362 ALLEEYLERDI 372 >gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] Length = 594 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 227/373 (60%), Gaps = 9/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59 + F D+ L P V L+A ++ PTPIQ++ IP +L+ DV G AQTGTGKTA+F LP Sbjct: 8 LSFNDMAL-PSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTAAFGLPA 66 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKK 118 L ++ A V+ + L++ PTRELA QVA+ E + K + VA + GG PF Q K Sbjct: 67 LAKID---ASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKA 123 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G +++ TPGR++D N+ L ++ +++ V+DEAD ML+MGFI I+ I VP T Sbjct: 124 LKQGTAIVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTA 183 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LFSATM + ++K+++ FL++P I++ + TI+ A Q K L +L Sbjct: 184 QRALFSATMPNAIRKLAKTFLKDPLNIQIEAIAREKATIKQK--AWKVQGMTKMTALTRL 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + +IF +++ +++ L++ GF + G+++Q R + +S + G I++ Sbjct: 242 LEV-TPYQRALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEI 300 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +V +D+ ARGLD+P++ HV N+D+P+ E+Y+HRIGRTGRAGR G+A ++ + Sbjct: 301 LVGTDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRTGEAILFFRAKERHLLR 360 Query: 359 AIEKLIEKKVDWL 371 E+L V++ Sbjct: 361 HYERLTNAPVEFF 373 >gi|47568574|ref|ZP_00239273.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] gi|47554816|gb|EAL13168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] Length = 481 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L + + IHG + Q R ++++F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMNDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|300727714|ref|ZP_07061100.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella bryantii B14] gi|299775002|gb|EFI71608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella bryantii B14] Length = 555 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 231/374 (61%), Gaps = 12/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + TPIQ KTIP +L HDV G+AQTGTGKTA+++LP+L Sbjct: 1 MRFENLDLNDNVLDALYDMRFDSCTPIQEKTIPEILNGHDVLGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 + L+ G +++ PTRELA Q+ + +G Y L ++A+ G G ++ Sbjct: 61 SKLDDGGYPEGAINCVVMSPTRELAQQIDQAMQGFG--YYLQGVSSIAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + K L+ GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I+ I + Sbjct: 119 EVKSLKLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFADDIKAIAKEL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P T QT++FSATM ++++ +++ L+NP I++ S AE I+ Y ++K + Sbjct: 179 PQTCQTIMFSATMPEKIEDLAKTLLKNPIEIKL-AVSKPAEKIKQSAYICYE--TQKLGI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ + ++ D +K I+FC K V + +L+++ + +H ++ Q R I+ FK G Sbjct: 236 IKDIFKAGD-LKRVIVFCGSKTKVKQVNSALQRKHINSGEMHSDLTQEERNDIMYKFKAG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+ +RG+DI D+ V N+DVP+ E+Y+HRIGRT RA R G A TLV++ED Sbjct: 295 QLDVLVATDIVSRGIDIDDITMVINYDVPHDTEDYVHRIGRTARADRDGVAITLVSEEDQ 354 Query: 355 KHIDAIEKLIEKKV 368 + EK +EK++ Sbjct: 355 FYFQQTEKFLEKEI 368 >gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Thermobifida fusca YX] gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Thermobifida fusca YX] Length = 503 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 135/355 (38%), Positives = 212/355 (59%), Gaps = 7/355 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ + A+ G V P PIQ +PL L D+ G A+TGTGKT +F LP+L Sbjct: 20 FRDLGVIDDIADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTFAFGLPLLQR 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + PR L++ PTRELA QVA + K ++ +A + GG +E Q L +G Sbjct: 80 VHTQPGSAKRPRALVVVPTRELAIQVAADLATASKRIDVRIATVYGGRAYEPQISALRKG 139 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR+LD + L+++ + LV+DEAD+MLD+GF+P I+ I + P RQT+L Sbjct: 140 VDIVVGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPDIERILAKTPDQRQTML 199 Query: 183 FSATMTDELQKVSENFLQNPKRIEV-NTP--SSTAETIEHCFVATYAQYSKKCALLQQLL 239 FSATM E+ +S +L+ P I + P + + + +H F K +L +LL Sbjct: 200 FSATMPSEIVALSRKYLRRPTHIRAEDDPLDTGSGQVTQHVF---RTHPLDKLEMLARLL 256 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q+++ ++FC K+ ++ L ++GF+ A+HG++ Q R + L F+ G + ++ Sbjct: 257 QARNRGLT-MVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDVL 315 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 VA+D+AARG+D+ DV HV N++ P+ + Y HRIGRTGRAGR G A T + +++ Sbjct: 316 VATDVAARGIDVDDVTHVVNYECPDDEKTYTHRIGRTGRAGRSGTAVTFIDWQEL 370 >gi|324326484|gb|ADY21744.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 436 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP++L D+ G A+TGTGKT +FVLP Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 60 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T TIE + T +K AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 Query: 361 EKLI 364 EK + Sbjct: 357 EKTL 360 >gi|54302107|ref|YP_132100.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9] gi|46915528|emb|CAG22300.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9] Length = 623 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 221/369 (59%), Gaps = 6/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L+ ++ A+ G+V PTPIQ +IPL+L D G AQTGTGKTA+F LP+L Sbjct: 7 EFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + P+ +++ PTRELA QVA + G+N L V + GG Q + L+ Sbjct: 67 KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+ D +R +L ++ + V+DEAD ML MGF+ + I P + Q Sbjct: 124 NGAHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQR 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++++ + FL+NP+RI+V + T + F + +K + ++L+ Sbjct: 184 VLFSATMPPIVKQIVDRFLRNPERIDVAGENRTVSQVSQQF--WIVKGVEKDEAMIRMLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + I+F +++ L L +G A+HG+I Q R + + + K G I ++V Sbjct: 242 TEENIDASIVFVRTRQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHIKRGVIDVLV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLDI + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + I Sbjct: 302 ATDVVARGLDIQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTI 361 Query: 361 EKLIEKKVD 369 E++ + +++ Sbjct: 362 ERVTKSRME 370 >gi|153002454|ref|YP_001368135.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS185] gi|160877173|ref|YP_001556489.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS195] gi|189040040|sp|A6WTD3|RHLB_SHEB8 RecName: Full=ATP-dependent RNA helicase rhlB gi|189040041|sp|A9L5D5|RHLB_SHEB9 RecName: Full=ATP-dependent RNA helicase rhlB gi|151367072|gb|ABS10072.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|160862695|gb|ABX51229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|315269377|gb|ADT96230.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 438 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/384 (38%), Positives = 233/384 (60%), Gaps = 13/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FADL L P+V A+ + G+ TPIQ ++P++LQ D+ G AQTGTGKT +F++ Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T + +GR + PR +I+ PTRELA Q+A + K+ +L V ++ GG ++ Q K Sbjct: 71 LLSTPVPEGRL-INQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+LI T GRI+D+ +G + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEA 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q L LFSAT++ ++Q+++ + + P ++E+ T++ I E F Y +K L Sbjct: 190 NQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIF---YPSQEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ +D + I+F N K + L LE G V + G++ Q+ R++IL F G Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE I + N D +L Sbjct: 366 LNLPAIESYINHSIPVSNYDSEAL 389 >gi|113969711|ref|YP_733504.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113884395|gb|ABI38447.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 427 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 208/369 (56%), Gaps = 16/369 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA+LG+ + + + Y PTPIQ TIP VL DV A TG+GKTA+F +P+L Sbjct: 10 SFAELGIIAPLCNRLTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQ 69 Query: 62 IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 L EK +VR L+L PTRELA QVAD+F Y ++N L + GG+ Sbjct: 70 RLFEAKTAEKSAGQVR---CLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L GADVL+ TPGR+LD L +N + LV+DEADRML +GF + + Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEA 186 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P +QTLL+SAT +E++ ++ L P +E + S TIE + +K A Sbjct: 187 LPAKKQTLLYSATFPEEVRALTAKLLHQP--LEYHLQSEQESTIEQRVITV--NREQKTA 242 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L++ Q +IF + K +L L K+G S HG+ Q +R ++L FK Sbjct: 243 LLAHLIK-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKS 301 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I +++A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ E+ Sbjct: 302 GDISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361 Query: 354 IKHIDAIEK 362 H IEK Sbjct: 362 YHHFGVIEK 370 >gi|254249351|ref|ZP_04942671.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia PC184] gi|124875852|gb|EAY65842.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia PC184] Length = 436 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 149/370 (40%), Positives = 217/370 (58%), Gaps = 14/370 (3%) Query: 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84 TPIQ ++P+ L D+ A+TG+GKTA+F L +L L+ AR + +IL PTREL Sbjct: 2 TPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLD---ARSFDVQAMILCPTREL 58 Query: 85 AAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143 A QVA + + N+ V L GG P Q + LE GA +++ TPGRI+DH +RG L Sbjct: 59 ADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPGRIMDHLDRGNLK 118 Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203 ++ + LV+DEADRMLDMGF I + + P TRQTLLFSAT D + K+S+ FL+NPK Sbjct: 119 LDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGIAKLSQQFLRNPK 178 Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263 I++ ++ + + T ++ + QLL + I FCN K+ +L Sbjct: 179 EIKLAERHDDSKIRQRFYEVT---EDERLHAVGQLLNHYRPVST-IAFCNTKQQCRDLLD 234 Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323 L QGF A+HG +DQR R ++L F + ++VA+D+AARGLDI + V N DV Sbjct: 235 VLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDVT 294 Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW------LNGDLSS 377 E ++HRIGRTGRA + G A +LV+ +++ + AIE+ +++V+W D S Sbjct: 295 PDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIEQAQKREVEWHPLAELKPADDSV 354 Query: 378 LNPPLEKIDI 387 L PP+E + I Sbjct: 355 LLPPMETLQI 364 >gi|308051267|ref|YP_003914833.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] gi|307633457|gb|ADN77759.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] Length = 427 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 146/383 (38%), Positives = 227/383 (59%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD L+P+VV A+ +G+ TPIQ T+P+VL D+ G AQTGTGKT +F++ Sbjct: 11 FADFPLAPQVVEALESSGFTHCTPIQALTLPIVLSGKDIAGQAQTGTGKTLAFLVATFHE 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K A + PR LI+ PTRELA Q+ + E + L + L GG +++Q Sbjct: 71 LLKQPAPEGHDGKSPRALIMAPTRELAIQIFKDAEPLSEATGLKLGLAYGGEGYDSQRAT 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176 LE G D+LI T GR++D++ +G +N I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LEAGVDILIGTTGRLIDYYKQGTYKLNGIQVMVLDEADRMFDLGFIKDIRYLFRRMPAPA 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R+ +LFSAT++ ++Q+++ + P+ ++V T + I E F Y K LL Sbjct: 191 ERRNMLFSATLSFKVQELAYEHMNEPEHVQVEPEQKTGKRIKEELF---YPSNDDKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ +D IIF N K ++ + G V + G++ Q+ R+KIL FK G Sbjct: 248 LTLIE-EDWPDKAIIFANTKHRCEDIWAWMAGDGHRVGLLTGDVPQKKRVKILEQFKAGE 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + +VA+D+AARGL I DV HVFN+D+P+ AE+Y+HRIGRTGRAG G + + ++ Sbjct: 307 VDFLVATDVAARGLHIADVTHVFNYDLPDDAEDYVHRIGRTGRAGATGHSISFACEQYAL 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE+ I ++ + D ++L Sbjct: 367 NLPAIEEYIGHQIPVSSYDATAL 389 >gi|329960668|ref|ZP_08299011.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057] gi|328532541|gb|EGF59335.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057] Length = 648 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 227/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + GY +P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSAEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K R+P++LIL PTREL Q+A + Y K + L V + GG E+Q + L+ Sbjct: 63 --QKINVNNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + ++ I+ +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+ ++S+ +L++ K I + + + ++H +A+ K A L++++ Sbjct: 181 LLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFCVHAK--DKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L ++G++ ++HG + Q R ++ F+ +QL+V Sbjct: 239 YNPQIY-GIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIIGKK 364 >gi|126176118|ref|YP_001052267.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS155] gi|217975023|ref|YP_002359774.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS223] gi|304412472|ref|ZP_07394078.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307307131|ref|ZP_07586869.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|189040039|sp|A3D9I5|RHLB_SHEB5 RecName: Full=ATP-dependent RNA helicase rhlB gi|254797691|sp|B8E670|RHLB_SHEB2 RecName: Full=ATP-dependent RNA helicase rhlB gi|125999323|gb|ABN63398.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] gi|217500158|gb|ACK48351.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] gi|304349114|gb|EFM13526.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306910370|gb|EFN40801.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 438 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/384 (38%), Positives = 233/384 (60%), Gaps = 13/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FADL L P+V A+ + G+ TPIQ ++P++LQ D+ G AQTGTGKT +F++ Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T + +GR + PR +I+ PTRELA Q+A + K+ +L V ++ GG ++ Q K Sbjct: 71 LLSTPVPEGRL-INQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+LI T GRI+D+ +G + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEA 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q L LFSAT++ ++Q+++ + + P ++E+ T++ I E F Y +K L Sbjct: 190 NQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIF---YPSQEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ +D + I+F N K + L LE G V + G++ Q+ R++IL F G Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE I + N D +L Sbjct: 366 LNLPAIESYINHSIPVSNYDSEAL 389 >gi|229159014|ref|ZP_04287070.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342] gi|228624433|gb|EEK81204.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342] Length = 481 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 218/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L + + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|222096052|ref|YP_002530109.1| ATP-dependent RNA helicase [Bacillus cereus Q1] gi|221240110|gb|ACM12820.1| ATP-dependent RNA helicase [Bacillus cereus Q1] Length = 451 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 152/416 (36%), Positives = 238/416 (57%), Gaps = 28/416 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP++L D+ G A+TGTGKT +FVLP Sbjct: 3 NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 60 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T TIE + T +K AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 237 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 297 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN-------PIPQKSTGFDRR 409 EK +L P+++ I Q R + P P+KS + +R Sbjct: 357 EK--------------TLGAPIQREIIEQPKIKRVDENGKPVPRPAPKKSGEYRQR 398 >gi|120597338|ref|YP_961912.1| ATP-dependent RNA helicase RhlB [Shewanella sp. W3-18-1] gi|146294517|ref|YP_001184941.1| ATP-dependent RNA helicase RhlB [Shewanella putrefaciens CN-32] gi|189040045|sp|A4YB09|RHLB_SHEPC RecName: Full=ATP-dependent RNA helicase rhlB gi|189040084|sp|A1RFB3|RHLB_SHESW RecName: Full=ATP-dependent RNA helicase rhlB gi|120557431|gb|ABM23358.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145566207|gb|ABP77142.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] gi|319427882|gb|ADV55956.1| ATP-dependent RNA helicase, RhlB [Shewanella putrefaciens 200] Length = 439 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/384 (38%), Positives = 233/384 (60%), Gaps = 13/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FADL L P+V A+ + G+ TPIQ ++P++LQ D+ G AQTGTGKT +F++ Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T + +GR ++ PR +I+ PTRELA Q+A + K+ L V ++ GG ++ Q K Sbjct: 71 LLSTPIPEGR-QINQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+LI T GRI+D+ +G + + I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q L LFSAT++ ++Q+++ + + +P ++++ T++ I E F Y K L Sbjct: 190 NQRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVF---YPSQEDKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ +D + I+F N K + NL LE G V + G++ Q+ R++IL F G Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE I + N D S+L Sbjct: 366 LNLPAIESYINHSIPVSNYDSSAL 389 >gi|118480482|ref|YP_897633.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|196045537|ref|ZP_03112768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|225867435|ref|YP_002752813.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|229187683|ref|ZP_04314819.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1] gi|118419707|gb|ABK88126.1| ATP-dependent RNA helicase DbpA [Bacillus thuringiensis str. Al Hakam] gi|196023744|gb|EDX62420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|225790635|gb|ACO30852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|228595751|gb|EEK53435.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1] Length = 481 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 218/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L + + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMEDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|294791601|ref|ZP_06756749.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27] gi|294456831|gb|EFG25193.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27] Length = 432 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 220/363 (60%), Gaps = 6/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ +++ A+ G +PTPIQ ++IP+V + +DV AQTGTGKT +F+LP + Sbjct: 4 FKSLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLP---V 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++ V + LI+ PTREL Q++D ++ G N+ + LIGG EAQ ++L R Sbjct: 61 LQRVHTDVHQEQVLIIAPTRELIKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGRR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L ++ I +V+DEAD+ML MGF+P I+N+ RQ LL Sbjct: 121 PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ D+++ +++ ++ P + T E+I+ + +K L ++++ Sbjct: 181 FSATIPDKIRNLAKAYMSKPVSVTAEGKHITLESIDQRVYMMNPE--EKTQRLIKMIED- 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D I+FCN+++ + L + L G ++ +HG++ Q R +IL +F + Q++VA+ Sbjct: 238 DNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HV+N+DVP + YIHRIGRTGRAG G A T +D + IE+ Sbjct: 298 DIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIER 357 Query: 363 LIE 365 I+ Sbjct: 358 AIQ 360 >gi|149187764|ref|ZP_01866061.1| ATP-dependent RNA helicase [Vibrio shilonii AK1] gi|148838644|gb|EDL55584.1| ATP-dependent RNA helicase [Vibrio shilonii AK1] Length = 430 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 140/359 (38%), Positives = 219/359 (61%), Gaps = 9/359 (2%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKGRAR---VRMPRTL 76 Y PTPIQ + IP VL D+ AQTGTGKTA+F LP++ I ++ + R ++ R+L Sbjct: 34 YESPTPIQARAIPYVLDGKDILAGAQTGTGKTAAFGLPLIHKIAQEPKVRESNSKVIRSL 93 Query: 77 ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136 +L PTRELA QV D+ K+ L V + GG Q K L GAD+L+ TPGR+LDH Sbjct: 94 VLTPTRELAQQVFDSLVPLAKDTGLKVVVAYGGTSMGVQTKNLVGGADILVATPGRLLDH 153 Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196 + + ++ E L++DEADRMLDMGF+P + I +P RQ ++FSAT ++ ++ Sbjct: 154 QHNRNITLSECEYLILDEADRMLDMGFMPDLNRILKRLPKERQNMMFSATFEQRIKTLAH 213 Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256 + P ++V +STA+T++ +K LL L+ S++ + ++F K+ Sbjct: 214 RIMNEPIEVQVTPANSTADTVKQMVYPV--DKKRKHELLAYLIGSRN-WQQVLVFTKTKQ 270 Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316 L L+ G + +I+G+ Q +R K L +FK G ++ ++A+D+AARGLDI + Sbjct: 271 GSDALAKELKLDGINAVSINGDKSQGARQKALDDFKSGKVRALIATDVAARGLDIQQLEQ 330 Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV--DWLNG 373 V NF++P +AE+YIHRIGRTGRAG G A +L++ ++ ++AIE+L++ ++ +WL G Sbjct: 331 VVNFELPYKAEDYIHRIGRTGRAGHAGFAVSLMSHDEQYLLEAIERLLDTRLPQEWLAG 389 >gi|290994831|ref|XP_002680035.1| ATP-dependent RNA helicase [Naegleria gruberi] gi|284093654|gb|EFC47291.1| ATP-dependent RNA helicase [Naegleria gruberi] Length = 629 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/381 (38%), Positives = 219/381 (57%), Gaps = 21/381 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + L PK++ + AG+ KPTP+Q +IP+VL D+ AQTG+GKT +F+ P+++ Sbjct: 154 FKEANLPPKLMQNIERAGFGKPTPVQKHSIPIVLAGRDLLSCAQTGSGKTCAFLFPIISN 213 Query: 63 L-------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109 L E V P LI+ PTREL+ Q+ D K+ + + GG Sbjct: 214 LMTQPGYETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGRRTVVAYGG 273 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 + Q K+LERG D+L+ TPGR++D +RG + ++N++ LV+DEADRMLDMGF P I+ Sbjct: 274 AAIQYQLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQIRY 333 Query: 170 ITSLV----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225 I P R TL+FSAT +Q ++ +FL N + V ST E I FV Y Sbjct: 334 IVEKTGMPAPGQRITLMFSATFPKNIQTLARDFLHNNLNLTVGRVGSTHENILQKFV--Y 391 Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 + +K L+ + + S +T+ ++F KK L + L K GF +IHG+ QR R Sbjct: 392 CKDDEKRDLMLEAIASVETLT--LVFVKTKKEASILEYFLMKNGFKSSSIHGDKTQRERE 449 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 L NF+ G ++VA+D+A+RGLDI DVGHV N+D+P E+Y+HRIGRTGRAG G + Sbjct: 450 TALENFRRGITPILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRTGRAGNTGIS 509 Query: 346 FTLVAKEDIKHIDAIEKLIEK 366 + ++ + D + ++E+ Sbjct: 510 TSFFTDKNNQIADDLITVLEE 530 >gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3] gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3] Length = 593 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 220/362 (60%), Gaps = 13/362 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ AV D G+ +P+PIQ+ +P +L D G AQTGTGKTA+F LP+L Sbjct: 5 FEELGLSQDLLDAVKDMGFEEPSPIQVLAVPALLAGRDAVGQAQTGTGKTAAFGLPILEK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 + G+ + L+L PTRELA QVA+ K + +T+ + GG E Q + L + Sbjct: 65 VISGKG----VQALVLCPTRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFRALAK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L ++ ++++V+DEAD MLDMGF I+ I P Q + Sbjct: 121 GAQVVVGTPGRIIDHLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDGCQRI 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 LFSATM ++++S+ FL+ P+ + + T IE + V Y + C ++L Sbjct: 181 LFSATMPPPIRELSKRFLREPEMLTIAHKMLTIPAIEQTYYEVRPYQKMDALC----RVL 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 SQ + ++FC+ K+ V + L+++G+ +HG++ Q R +++ F+ ++++ Sbjct: 237 DSQG-FRKALVFCSTKRGVDEVTTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLEIL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358 VA+D+AARG+D+ DV V N+D+P+ E Y+HR+GRTGRAGR G AFT V +E K D Sbjct: 296 VATDVAARGIDVDDVDAVINYDMPHDVEKYVHRVGRTGRAGRVGSAFTFVTMREQYKLRD 355 Query: 359 AI 360 I Sbjct: 356 II 357 >gi|170724880|ref|YP_001758906.1| ATP-dependent RNA helicase RhlB [Shewanella woodyi ATCC 51908] gi|226739552|sp|B1KQF6|RHLB_SHEWM RecName: Full=ATP-dependent RNA helicase rhlB gi|169810227|gb|ACA84811.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 441 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 150/408 (36%), Positives = 248/408 (60%), Gaps = 17/408 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FAD L+ ++ A+ ++G+ TPIQ ++P++LQ+ D+ G AQTGTGKT +F++ Sbjct: 11 FADFSLNKEIKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFDH 70 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T + +GR ++ PR +I+ PTRELA Q+A + K+ L V ++ GG ++ Q K Sbjct: 71 LLSTPVPEGR-QLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYDVQRK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G D+LI T GRI+D+ +G + ++ I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 VLDKGVDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDA 189 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 +R +LFSAT++ ++Q+++ + + P+++ + T++ I E F Y +K L Sbjct: 190 KSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIF---YPSMDEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ +D + I+F N K + N+ LE G V + G++ Q+ R++IL F EG Sbjct: 247 LLSLIE-EDWPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG+ G + + +E Sbjct: 306 KLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 ++ AIE+ I + N D L L+ I H RK+N PQ+ Sbjct: 366 LNLPAIEEYITHSIPVTNYDSEGL---LDDIPAPIRVH-RKHNNRPQQ 409 >gi|49480463|ref|YP_039444.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332019|gb|AAT62665.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 481 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 219/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L + + IHG + Q +R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQENRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] Length = 451 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 216/368 (58%), Gaps = 11/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ +S A+ + +V+PT +Q K IPL ++ D+ ++TG+GKT +F++P+ Sbjct: 4 LKFEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIF 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L G ++L PTRELA QV GK + ++ GG P E Q L Sbjct: 64 ENLNSG------LEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGL- 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA ++I TPGR++D RG L +N I V+DEADRMLDMGFI I+ I P +Q Sbjct: 117 KGASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQM 176 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM E+ ++ +++NP++I ++ TAE + +V K A L LL Sbjct: 177 MLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEV--GEINKIAKLSSLLI 234 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+ +IFCN ++ N+ L+K GF A+HG++ Q +R + + FK+G I ++V Sbjct: 235 SERG--KYLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILV 292 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ++D+AARG+D+ + HV N+DVP ++Y+HRIGRTGR HGKA T V +ED ++ I Sbjct: 293 STDVAARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRI 352 Query: 361 EKLIEKKV 368 E I K++ Sbjct: 353 EDFIGKRI 360 >gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] Length = 451 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 144/386 (37%), Positives = 225/386 (58%), Gaps = 13/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ +S A+ + +V+PT +Q K IPL ++ D+ ++TG+GKT +F++P+ Sbjct: 4 LKFEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIF 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L G ++L PTRELA QV GK + ++ GG P E Q L Sbjct: 64 ENLNSG------LEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGL- 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA ++I TPGR++D RG L +N I V+DEADRMLDMGFI I+ I P +Q Sbjct: 117 KGASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQM 176 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM E+ ++ +++NP++I ++ TAE + +V K A L LL Sbjct: 177 MLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEV--GEINKIAKLSSLLI 234 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+ +IFCN ++ N+ L+K GF A+HG++ Q +R + + FK+G I ++V Sbjct: 235 SERG--KYLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILV 292 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ++D+AARG+D+ + HV N+DVP ++Y+HRIGRTGR HGKA T V +ED ++ I Sbjct: 293 STDVAARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRI 352 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386 E I K++ + ++ ++ E+ID Sbjct: 353 EDFIGKRIPKM--EIKNVGKIKERID 376 >gi|332881684|ref|ZP_08449332.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680323|gb|EGJ53272.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 679 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 226/377 (59%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + GY P P+Q + IP +L +DV +AQTGTGKTA++ LP Sbjct: 4 FEELGVSAEIRQAIEEMGYENPMPVQEEVIPYLLGVNNDVVALAQTGTGKTAAYGLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +L+K A + + LIL PTREL Q+AD+ E Y K + V + GG E Q + L Sbjct: 61 VLQKVDATRNVTQALILSPTRELCLQIADDLENYSKYLPGVRVLPVYGGANIEPQIRTLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ TPGR++D RG + ++E +V+DEAD ML MGF I I + VP T Sbjct: 121 KGVQVIVATPGRLIDLMERGAASLEHVENVVLDEADEMLSMGFTESIDKILAGVPENHNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++++S+ +L+ K I V + + AET+ H + +A+ K L++++ Sbjct: 181 LLFSATMSREIERISKKYLREAKEIVVGSRNEGAETVNHVYYMVHAK--DKYLALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC + + L + G++ ++HG++ Q+ R + F++ +Q +V Sbjct: 239 YYPKI-YAIIFCRTRMETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHRVQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ ENY HR GRTGRAG+ G + +V + I I Sbjct: 298 ATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERSKIREI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 EK+I K +++ G++ S Sbjct: 358 EKVIGK--EFVKGEMPS 372 >gi|269119742|ref|YP_003307919.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386] gi|268613620|gb|ACZ07988.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC 33386] Length = 530 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 145/362 (40%), Positives = 216/362 (59%), Gaps = 8/362 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG+S + A+ G+ P+ IQ IP L+ +R ++ G AQTGTGKTA+F +P+L Sbjct: 6 FLDLGVSEATLKALDKKGFTSPSAIQTLVIPELLKERTNLIGQAQTGTGKTAAFAIPILE 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ + R ++L PTRELA QVAD + V + GG + Q KK+++ Sbjct: 66 TLDCDGS----VRAIVLAPTRELANQVADEMYSLRGKKEIKVLPVYGGQSIDQQIKKIKK 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGRILD NR + +NN+E V+DEAD ML+MGFI I+ I ++ L Sbjct: 122 GIDVIVGTPGRILDLMNRKVIKLNNLEYFVLDEADEMLNMGFIEDIELILERTNEDKKML 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSAT+ D + K+++ F+++ K ++V T T E + + K AL + L Sbjct: 182 FFSATIPDSIMKIAKKFMKDYKLLKVKTKELTTNLTEQIYFEV-TEGDKFEALCRVLDYV 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D GI+FC K +V ++ L+ +G+ AIHG+I Q RMK L +FK+ I ++VA Sbjct: 241 HDFY--GIVFCRTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T V ++ I I+ Sbjct: 299 TDVAARGIDVNDLTHVINYSIPQEPESYVHRIGRTGRAGKKGIAITFVTPKEASKISKIQ 358 Query: 362 KL 363 +L Sbjct: 359 RL 360 >gi|73996624|ref|XP_863165.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 9 [Canis familiaris] Length = 811 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 151/417 (36%), Positives = 228/417 (54%), Gaps = 42/417 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVK 452 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E+ + P +IL PTRELA Q+ + K+GK + +IGGI E Q +L G Sbjct: 453 IEES---DQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMG 509 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P + Sbjct: 510 CEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPD 569 Query: 178 ---------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET 216 RQT++F+ATM +++++ ++L+ P + + + E Sbjct: 570 TDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHER 629 Query: 217 IEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +E F+ + ++ KK A+L+Q IIF NQKK L SLEK G++ C Sbjct: 630 VEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKMGYNACT 684 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+YIHRIG Sbjct: 685 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 744 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391 RTGRAG+ G A T + KED +++ I L +SS P L AQH Sbjct: 745 RTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHK 795 >gi|149187557|ref|ZP_01865854.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1] gi|148838437|gb|EDL55377.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1] Length = 416 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 222/367 (60%), Gaps = 13/367 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGL P +V + + Y +PTPIQ TIP +L+ D+ G A TG+GKTA+F LP+L Sbjct: 10 FADLGLIPTLVERLEELEYSQPTPIQSHTIPYLLEGRDLVGGANTGSGKTAAFSLPILQK 69 Query: 62 ILEKGRARVRMPRT---LILEPTRELAAQVADNFEKYG---KNYNLTVALLIGGIPFEAQ 115 I ++ + R T LIL PTRELA+QVA N + Y +N TVA+ GG+ Q Sbjct: 70 ICQQDKPNSRRGNTVSHLILVPTRELASQVAYNVKSYSYHLRNEIKTVAVF-GGVSANPQ 128 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L G+D+++ TPGR+LD + + ++ ++ LV+DEADRML +GF + I +L+P Sbjct: 129 MLALRGGSDIVVATPGRLLDLVSSNAIKLDQVQTLVLDEADRMLSLGFTEELNKILALLP 188 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 +QTLLFSAT +++ ++++ L NP +++ + + T+ ++ F Q K A+L Sbjct: 189 EKKQTLLFSATFPEKVTSLAQHLLSNPVEVQLQS-AETSTLVQRVFSVNKGQ---KTAVL 244 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ Q + +IF N K + +L L K+G + HG+ Q +R ++L FK G Sbjct: 245 AHLIK-QHQWRQALIFVNAKNSCNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFKSGD 303 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 IQ+++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G +L+ +D Sbjct: 304 IQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYH 363 Query: 356 HIDAIEK 362 H IEK Sbjct: 364 HFKVIEK 370 >gi|320158479|ref|YP_004190857.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O] gi|319933792|gb|ADV88655.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O] Length = 459 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 223/363 (61%), Gaps = 7/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P+++ + GY + TPIQ +++PLVL DV G +TG+GKTA+F L +L+ Sbjct: 5 FNTLSLKPELLSTLDTLGYTEMTPIQAQSLPLVLAGKDVIGQGKTGSGKTATFSLGLLSN 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 65 LNVSRFRVQ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEH 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ + + LV+DEADRML+MGF I I P RQTL Sbjct: 122 GAHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++ ++ +QNP+ ++V + + TIE F + + AL LL Sbjct: 182 LFSATFPEQIETIASKVMQNPEMVKVES-THQKSTIEQRFYQLESTEERDNALEALLLTH 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN KK V N+ L + FSV +HG+++QR R + L+ F +I ++VA Sbjct: 241 RP--ESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ V NF++ E ++HRIGRTGRAG G A + +++++ ++ IE Sbjct: 299 TDVAARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIE 358 Query: 362 KLI 364 + + Sbjct: 359 EYM 361 >gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36] gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36] Length = 488 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 133/332 (40%), Positives = 209/332 (62%), Gaps = 6/332 (1%) Query: 40 DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99 DV G AQTGTGKTA+F P L ++ V+ LI+ PTRELA Q + ++G++ Sbjct: 5 DVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQ---ALIIAPTRELAVQSQEELFRFGRSK 61 Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159 + V + GG E Q K L+ GA +++ TPGR+LD R L +N IE L++DEAD ML Sbjct: 62 GVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEML 121 Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219 +MGF+ I++I S VP RQTLLFSATM D ++++ F++ P+ +++ T E ++ Sbjct: 122 NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQ 181 Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279 ++ + ++K + +L+ + + I+F K+ V L L+ +GF IHG++ Sbjct: 182 YYI--RVKENEKFDTMTRLMDVEQP-ELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDL 238 Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339 DQ R+++L +FK G + ++VA+D+AARGLDI V HV+N+D+P E+Y+HRIGRTGRA Sbjct: 239 DQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRA 298 Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371 G+ G++ T VA ++ ++ IE L +K++ L Sbjct: 299 GKSGQSITFVAPNEMGYLQIIENLTKKRMKGL 330 >gi|322379432|ref|ZP_08053802.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1] gi|322380957|ref|ZP_08055023.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis HS5] gi|321146629|gb|EFX41463.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis HS5] gi|321148141|gb|EFX42671.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1] Length = 471 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 214/368 (58%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL K++ ++ DAG+ P+PIQ K IP++L+ DV AQTGTGKTA+F LP++ Sbjct: 22 FKDLGLHSKILKSIADAGFTGPSPIQEKAIPVILEGKDVIAQAQTGTGKTAAFALPIIQN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ ++ LI+ PTRELA Q++D K GK+ + GG + Q LER Sbjct: 82 LQNDKS----IEALIITPTRELAMQISDEIFKLGKSSRTRTICVYGGQSIKKQCDLLERN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH +L ++V+DE+D MLDMGF+ I+ I + +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNKRLKRFAPRVVVLDESDEMLDMGFLDDIEEIFNYLPEDAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++ ++ LQ+P I + T I F ++ + A+++ L + Sbjct: 198 FSATMPAPIKDLANKILQDPVSIHIAPTHVTNADISQRFYVI-NEHERNEAIMRLL--DK 254 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIF K+ V L L +G+ +HG+++QR+R + + FK ++VA+ Sbjct: 255 ENHSKSIIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARRESIKAFKSKLADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI DV HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKELQRMQK 374 Query: 363 LIEKKVDW 370 I ++ Sbjct: 375 DIGSSIEL 382 >gi|227832522|ref|YP_002834229.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|262183610|ref|ZP_06043031.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|227453538|gb|ACP32291.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] Length = 462 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 217/362 (59%), Gaps = 5/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG++ ++ A+ D G + IQ T+P+ L D+ G A+TG GKT F +P+L Sbjct: 16 FAELGVAVEICDALADNGITRTFAIQELTLPIALNGQDLIGQARTGMGKTYGFGVPLLDR 75 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + PR L++ PTRELA QV+ + E N L+V L GG P+E Q ++ Sbjct: 76 VFDDADIPELDGTPRALVIAPTRELAIQVSGDLELAAANLPLSVVTLCGGRPYEEQITQI 135 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-R 178 E GADV++ TPGR+LD + L +++ +LV+DEAD MLD+GF+P I+ I SL+ Sbjct: 136 ESGADVVVGTPGRLLDLCQKKHLSFDHVSVLVLDEADEMLDLGFLPDIEKILSLLHGNPH 195 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATM + ++ FL+ P I + + V A K A+L + Sbjct: 196 QTMLFSATMPGPIVTLARTFLEKPVHIRAESGDAQHTHSSTRKVTFQAHRMDKIAVLGKA 255 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ++ + IIF K++ + L ++GF V A+HG++DQ++R + L+ F+EGT+++ Sbjct: 256 LQAEGRGRT-IIFTRTKRSAAAVAEELAQRGFRVGAVHGDLDQKARERSLNTFREGTVEI 314 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV HV N+ VP+ ++HRIGRTGRAG G A TLV +++ Sbjct: 315 LVATDVAARGIDIEDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLVGYDELSKWQ 374 Query: 359 AI 360 I Sbjct: 375 VI 376 >gi|229094565|ref|ZP_04225632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42] gi|228688812|gb|EEL42643.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42] Length = 481 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 218/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L + + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9] gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9] Length = 581 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 144/393 (36%), Positives = 231/393 (58%), Gaps = 29/393 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ ++ ++ + PT +Q+K+IPL L+ D+ AQTG+GKTA+F+LP + Sbjct: 6 FADLGIEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFMLPSIQQ 65 Query: 63 L--------------------EKGRARVRMPR----TLILEPTRELAAQVADNFEKYGKN 98 L K R+ P+ L+L PTRELA QV+D +++ Sbjct: 66 LLHELETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQVSDATKEFIYG 125 Query: 99 Y-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157 + + +A L+GG+ + Q L R ++++ TPGR+LDH G++ + N++IL++DEADR Sbjct: 126 FKGVHIATLVGGMAYGPQINSLSREVEIVVATPGRLLDHIKAGRVNLRNLKILILDEADR 185 Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217 MLDMGFI I N+ + P RQTLLFSAT + K++ + L +P+RI V+ + + I Sbjct: 186 MLDMGFIHDINNVVAETPDDRQTLLFSATFEGNVVKLARDMLTDPERIIVSDHTDKHQNI 245 Query: 218 E-HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIH 276 E + F A + K LL+ LL+ + + I+F K+ +L L+ +H Sbjct: 246 EQYLFYADTVGH--KFKLLEALLKDPEA-EQVIVFTKTKRGATDLAGRLKDIDIKASELH 302 Query: 277 GNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336 G+++Q R + + +G I+++VA+D+AARG+DI + HV N+D+P +AE+Y+HRIGRT Sbjct: 303 GDMNQGQRNRTIQGLHKGKIKVLVATDVAARGIDIQGISHVINYDLPMQAEDYVHRIGRT 362 Query: 337 GRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 GRAGR G+A+TL + + + IE I ++ D Sbjct: 363 GRAGRDGRAYTLALLSERRGVRFIENYINREFD 395 >gi|167757993|ref|ZP_02430120.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704] gi|167664425|gb|EDS08555.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704] Length = 526 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 225/369 (60%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P+++ AV + G+ + +PIQ K IP +L+ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FEDLGLCPEIMKAVKNMGFEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 EK + + + ++L PTRELA QVA+ N KY + + V + GG Q + L Sbjct: 64 -EKIDPKNKKLQAIVLCPTRELAIQVAEEIRNLAKY--MHAIKVLPIYGGQEIVKQIRSL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++I TPGR++DH R + M N+ +V+DEAD ML+MGF I+ I VP RQ Sbjct: 121 KSGTQLIIGTPGRVMDHMRRKTVKMENVHTVVLDEADEMLNMGFREDIETILEGVPEERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + +++ F +N + I+V T IE + + K +L +LL Sbjct: 181 TVLFSATMPKPILDITKRFQKNAELIKVTKKELTVPNIEQFYYEVKPK--NKEEVLSRLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + K +IFCN KK V L + L +G+ +HG++ Q R +++ F++G +++ Sbjct: 239 DIYNP-KLSVIFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMDGFRKGKTEIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V VFN+D+P E Y+HRIGRTGRAGR G++F+ V +++ + Sbjct: 298 VATDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVTGKEVYKLKE 357 Query: 360 IEKLIEKKV 368 I++ + K+ Sbjct: 358 IQRYCKTKI 366 >gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella multiformis DSM 16608] gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella multiformis DSM 16608] Length = 572 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 153/425 (36%), Positives = 245/425 (57%), Gaps = 23/425 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ V+ A+ D + + TP+Q K IP +L+ DV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGKDVLGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT----VALLIG--GIPFEA 114 + L G +I+ PTRELA Q+ + + Y L VA+ G G ++ Sbjct: 61 SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFA--YYLDGVSCVAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + K L GADV+I TPGR + H + G + ++ + ++DEADRMLDMGF I I + Sbjct: 119 ELKSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P + QT++FSATM +++++++ L+NP I++ S AE I Y ++K + Sbjct: 179 PASCQTIMFSATMPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYE--TQKIGI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ + ++ D +K IIF K+ V + SL ++ + +H ++DQ R ++ FK G Sbjct: 236 IKDIFKAGD-LKRVIIFSGSKQKVKQIAASLSRKHINCGEMHSDLDQEQRNDVMFKFKSG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+ ARG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R GKA T V+ +DI Sbjct: 295 QIDVLVATDIVARGIDIDDITMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVSVDDI 354 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 + IE +EK+++ + P E++ K+N P++ + R++ Sbjct: 355 YYFQQIEAFLEKEIEKI--------PLPEELG---EGPEYKSNGKPKRGSSAKSRRRKDR 403 Query: 415 SQKSH 419 Q+SH Sbjct: 404 DQQSH 408 >gi|157828874|ref|YP_001495116.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801355|gb|ABV76608.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila Smith'] Length = 410 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 216/364 (59%), Gaps = 13/364 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 3 NFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 62 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K +Y + A+LIGG P Q +L++ Sbjct: 63 KNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNPK 117 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P RQ L+FS Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + VS+ +L NP RI V + A I E V+ ++S AL +QL + Sbjct: 178 ATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTKQLGHRE 234 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ IIF K++ L L+ + + AIHG++ QR R +++ +F++ ++MVA+ Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ AI++ Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351 Query: 363 LIEK 366 L+ K Sbjct: 352 LVNK 355 >gi|24372534|ref|NP_716576.1| ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1] gi|24346546|gb|AAN54021.1|AE015540_1 ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1] Length = 420 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 219/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G++ PT IQ +T+P L++ D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LIL PTRELA+Q+ + L +A++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR++++ ++GK +++IL+IDEADRMLDMGF ++ I +Q Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ + + + L +P I+V+ P I H ++ K ALL L Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLADDKDHKFALLCHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D +K I+F + V +L L + G + G+++Q+ R + LS F +G + + Sbjct: 240 LKQED-VKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV NFD+P A+ YIHRIGRTGRAG G A +L D++ + Sbjct: 299 LLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 359 KIERYIEQ 366 >gi|228988681|ref|ZP_04148767.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771132|gb|EEM19612.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 481 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 218/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ LS +V A+ GY PT +Q + IP+ LQ+ D+ +QTG+GKTASF +P+ + Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VEWEENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G L + ++ LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S ++ P IE+ T + IEH + +K +LL+ + + Sbjct: 183 FSATLPEDVERLSRTYMNAPIHIEIKAAGITTDKIEHTLFEVREE--EKLSLLKDVTTIE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++NV ++ L + + IHG + Q R ++ +F++G + +VA+ Sbjct: 241 NP-DSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG GKA T + + + ++ IE Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITSYEDRFLEEIEA 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|115373138|ref|ZP_01460440.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1] gi|115369894|gb|EAU68827.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1] Length = 606 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 144/365 (39%), Positives = 217/365 (59%), Gaps = 12/365 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F LGLS + + AV A + PTPIQ + IP L DV G A TGTGKTA+++LP++ Sbjct: 31 SFKSLGLSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVE 90 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L A R P L+L PTREL Q+A +G+ LT A++ GG AQ + L + Sbjct: 91 RL----AGERGPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQ 146 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR+ D G ++ + +LV+DEADR L+MGF+P +Q I + +P RQTL Sbjct: 147 RPTLVLATPGRLADLLKEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTL 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSST--AETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT+ + + ++ L+ P R+EV TPS T A ++ + + S+K LL LL Sbjct: 207 LFSATLGHNVTRFAQEVLRKPVRVEV-TPSGTPAARAVQRLY---EVEASEKYPLLLSLL 262 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++D + ++F ++ + L++ G AIH + Q R + L F+ G + + Sbjct: 263 -AKDQLSV-LVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCL 320 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLD+ D+GHV NFD+P+ E+Y+HRIGRT RAG G+A T V D + + A Sbjct: 321 VATDIASRGLDVEDIGHVINFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRA 380 Query: 360 IEKLI 364 IE+++ Sbjct: 381 IERIV 385 >gi|24372003|ref|NP_716045.1| ATP-dependent RNA helicase RhlB [Shewanella oneidensis MR-1] gi|32363323|sp|Q8EJQ5|RHLB_SHEON RecName: Full=ATP-dependent RNA helicase rhlB gi|24345864|gb|AAN53490.1|AE015489_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 439 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 147/384 (38%), Positives = 234/384 (60%), Gaps = 13/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FADL L P+V A+ + G+ TPIQ ++P++LQ D+ G AQTGTGKT +F++ Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + +GR ++ PR +I+ PTRELA Q+A + K+ L V ++ GG ++ Q K Sbjct: 71 LLSSSIPEGR-QLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+LI T GRI+D+ +G + +N I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q L LFSAT++ ++Q+++ + + +P ++E+ T++ I E F Y K L Sbjct: 190 DQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIF---YPSQEDKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ +D + I+F N K + NL LE G V + G++ Q+ R++IL F +G Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE I + N D +L Sbjct: 366 LNLPAIETYINHSIPVSNYDRDAL 389 >gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter sp. Re1] Length = 529 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 158/392 (40%), Positives = 234/392 (59%), Gaps = 13/392 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +++ A+ D G+ + TPIQ + IP + + DV G AQTGTGKTA+F LP+L Sbjct: 4 MKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGLPIL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 +++ + + +IL PTRELA QVA+ + K + + + GG P E Q L Sbjct: 64 DMIDTDD---KNQQAIILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQIHAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG ++I TPGR++DH R L + N +I+V+DEAD MLDMGF I+ I P RQ Sbjct: 121 KRGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPKARQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSAT+ + +++E +L NP+ I+V T ++E + + K L +L+ Sbjct: 181 TLMFSATIPKPILELAERYLNNPQLIKVVHKELTVPSVEQYYFEV--KERDKVEALSRLI 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++FCN KK V L L+ +G+S +HG++ Q R ++++ FK GTI ++ Sbjct: 239 DFYNP-NLALVFCNTKKRVDELMEQLQARGYSADGLHGDMSQSQRDRVMTKFKNGTIDIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ DV V NFDVP E Y+HRIGRTGRAGR GKAFT V DI + Sbjct: 298 VATDVAARGLDVDDVDVVVNFDVPQNDEYYVHRIGRTGRAGRSGKAFTFVIGRDIYKLKD 357 Query: 360 IEKLIEKKV------DWLNGDLSSLNPPLEKI 385 I++ K+ L+ + + +N LEK+ Sbjct: 358 IQRYANTKILRREIPSLLDVEETRINLLLEKV 389 >gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60] Length = 448 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 150/431 (34%), Positives = 234/431 (54%), Gaps = 13/431 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L +++ A+ D GY +PT IQI IP + DV G A TGTGKTA+F+LP L Sbjct: 5 NFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + PR LIL PTRELA QVAD + ++ +L + + GG+ + + Sbjct: 65 HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFN 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D+++ TPGR+L + +E L++DEADRMLDMGF I+ +++ + RQT Sbjct: 125 TNQDMVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQT 184 Query: 181 LLFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ +D + ++ L +P + P + I+ + + K ALL LL Sbjct: 185 LLFSATLESDAVHDFADRLLNDPVDVSAEPPRRERKKIQQWYYRADS-LKHKTALLCSLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K+ +IF +++ V L L + G C + G + Q R + + +G + ++ Sbjct: 244 RQPDVTKS-VIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIPD+ HVFNFD+P A+ Y+HRIGRT RAGR G A +L+ D + Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGK 362 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 + + +++ + + + L P + + KN P K R +K QK Sbjct: 363 VSRYVQEPLK--SRVVDELRPETKAPSL-------KNKGKPSKKVQAKRAQKKADEQKKK 413 Query: 420 IPLKESEKISK 430 + K + SK Sbjct: 414 VKTKVRHRDSK 424 >gi|86148322|ref|ZP_01066616.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222] gi|85833877|gb|EAQ52041.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222] Length = 428 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 216/370 (58%), Gaps = 15/370 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F+DLGL ++ + + Y +PTPIQ + IP VL D+ A TG+GKTA+F LP+L Sbjct: 9 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAERDLIAGANTGSGKTAAFALPLLQ 68 Query: 61 -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 L++ + LIL PTRELA QVAD+ + Y ++N + + GG+ Sbjct: 69 KIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 128 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + I L Sbjct: 129 TQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 188 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT ++++ ++ L +P IEV S+ A T ++ F + +K Sbjct: 189 LPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVF---EVEKGRKT 243 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ALL L+Q Q + +IF N K + +L L K+G HG+ Q SR +IL +FK Sbjct: 244 ALLAHLIQ-QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFK 302 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I +++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A +L+ E Sbjct: 303 SGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 362 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 363 DYHHFTIIEK 372 >gi|229085402|ref|ZP_04217643.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44] gi|228697878|gb|EEL50622.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44] Length = 433 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP+V+ D+ G A+TGTGKT +FVLP+L Sbjct: 3 NFLELGISETFNHTLRENGIAEATPIQEQAIPVVMAGKDIIGQAKTGTGKTLAFVLPILE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ LI+ PTRELA Q+ EK ++ V + GG Q +KL+ Sbjct: 63 KIDPESSDVQ---ALIVAPTRELALQITTEIEKMLVHKEDINVLAIYGGQDVAQQMRKLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R ++++N+ +LV+DEAD+ML GF+ I++I P ++QT Sbjct: 120 GNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ +++ P+ I + + T I+ + T +K+ AL + + Sbjct: 180 MLFSATMPKDIKKLAKRYMKEPEMIRIQSEEVTVNNIKQRVIET-TDRAKQDALRHVMDR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + +IFC K+ L L+ G++ +HG++ Q R +++ +F+E IQ ++ Sbjct: 239 DQPFL--AVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFREAKIQYLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D H+ I Sbjct: 297 ATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMHLKEI 356 Query: 361 EKLI 364 EK I Sbjct: 357 EKGI 360 >gi|33863354|ref|NP_894914.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313] gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313] Length = 635 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 222/373 (59%), Gaps = 9/373 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F G S ++ + + GY +P+PIQ IP ++ D+ G AQTGTGKTA+F LP++ Sbjct: 84 EFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIE 143 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L +R P+ L+L PTRELA QVAD+F Y + +L V + GG F +Q L+ Sbjct: 144 RLHDHGSR---PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLK 200 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR++DH +G L + + LV+DEAD ML MGFI ++ I +P RQ Sbjct: 201 RGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPEERQM 260 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239 +LFSATM E++++S+ +L P I + + A I + C Q S K L+++L Sbjct: 261 VLFSATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQRCIT---LQNSHKLEALRRVL 317 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ T + IIF K + + +LE G V ++G++ Q R + + ++G++ ++ Sbjct: 318 EAF-TGEGVIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKGSVNIL 376 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + V N+D+P +E Y+HRIGRTGRAGR G+A V + + + Sbjct: 377 VATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGG 436 Query: 360 IEKLIEKKVDWLN 372 E+ + + ++ ++ Sbjct: 437 FERAVGQPIEPMD 449 >gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] Length = 463 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 219/368 (59%), Gaps = 6/368 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ L L P ++ + GY TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 5 DFSTLKLQPALLKNLQSIGYAHMTPIQAQSLPHILAGRDVIGQGKTGSGKTAAFGLGLLQ 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120 L R V+ L+L PTRELA QVA K + +N+ V L GG+PF Q LE Sbjct: 65 KLNVKRFHVQ---ALVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQLGSLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGRI +H +G L ++N+ +LV+DEADRML+MGF + I P TRQT Sbjct: 122 HGAHIIVGTPGRIEEHVRKGALKLDNLTLLVLDEADRMLEMGFQEALDAIIDQTPQTRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +++ ++ ++ P ++V +A +H + ++ AL + L Sbjct: 182 LLFSATFPRQIESIAGRVMKTPVMVQVEATHDSAVITQHFYEVADDTADRQQALRRLLRY 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q T + ++FCN K++ ++ L + GFS A+HG+++QR R + L F G+ ++V Sbjct: 242 YQPT--SAVVFCNTKQDTRDVADDLREHGFSALALHGDLEQRERDQSLVRFSNGSASILV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + VFN+ + E ++HRIGRTGRAG HG A +L + ++ ++ + Sbjct: 300 ATDVAARGLDIEALDAVFNYHIARDTEVHVHRIGRTGRAGSHGMACSLYSAKEHFKVERL 359 Query: 361 EKLIEKKV 368 K +++ + Sbjct: 360 AKFLDQSL 367 >gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM 2228] Length = 529 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 141/367 (38%), Positives = 224/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L +S +++ AV + G+ + TPIQ IP VL D+ G AQTGTGKTA+F +P+L Sbjct: 6 FNELNVSDEILKAVEEMGFEETTPIQTNAIPAVLNGQDIVGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLER 121 E+ + + P+ +IL PTRELA QV++ ++ K L + GG Q K L++ Sbjct: 64 -EEMDSENKNPQAIILCPTRELAIQVSEELKRLAKYKRRIYTLPVYGGQSIGRQIKALKK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH R L ++NI V+DEAD MLDMGFI I+ + +P RQTL Sbjct: 123 GVQIVIGTPGRVMDHIRRKTLKLDNINYFVLDEADVMLDMGFIDDIETVLRDIPDDRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSAT+ ++++S+ + +N K + V + T +I+ + + + K L +++ Sbjct: 183 FFSATIPKSIKRLSKKYQKNSKFLRVAHENLTVPSIDQYYYEI--RRNDKLKALTRIMDL 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+FCN +K V L L+ +G+ AIHG ++Q R +++ F+ G I+++VA Sbjct: 241 SNP-ELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMKKFRSGIIEVLVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P + Y+HRIGRTGRAG+ G+A V +DI + I+ Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDTDYYVHRIGRTGRAGKSGEAHNFVVGKDIYKLRDIQ 359 Query: 362 KLIEKKV 368 K + K+ Sbjct: 360 KYTKSKI 366 >gi|325123630|gb|ADY83153.1| ATP-dependent RNA helicase [Acinetobacter calcoaceticus PHEA-2] Length = 620 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 227/377 (60%), Gaps = 15/377 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 65 LAGQETFVPFKERMKA-VTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ +E L++DEADRMLD+GF ++ I+ Sbjct: 124 FGKQIQQL-KGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAIS 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L RQTL+FSAT D + +++E + P+RI + T ST I T KK Sbjct: 183 DLAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L L + +T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 243 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360 Query: 352 EDIKHIDAIEKLIEKKV 368 + I A+E ++ ++ Sbjct: 361 RERGKIRALEDYLDARL 377 >gi|326318919|ref|YP_004236591.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375755|gb|ADX48024.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 478 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 151/392 (38%), Positives = 221/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL+P+V+ + GY + TPIQ ++P L D+ A TG+GKTA+F L +L Sbjct: 20 FDALGLAPEVLANLRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLER 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L R V+ L+L PTRELA QVA + + N+ V L GG+P Q LE Sbjct: 80 LNPRRFAVQ---ALVLCPTRELADQVASEIRRLARAQENIKVVTLCGGVPLRGQVASLEH 136 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L + + V+DEADRMLDMGF I + P TRQTL Sbjct: 137 GAHVVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTL 196 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D +++++ F+++P+RI V + + + + Q ++ + QLL + Sbjct: 197 LFSATYPDGIERIARQFMKDPQRIAVQAQHAEGKIEQRWY---EVQERERLHAVSQLL-N 252 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ I FCN K+ +L L QGFS A+HG+++QR R ++L F + ++VA Sbjct: 253 HFRPESAIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVA 312 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI + V N DV E +IHRIGRTGRA G A +L + ++ + IE Sbjct: 313 TDVAARGIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLALSLASLPEMGQVGRIE 372 Query: 362 KLIEKKVDW--LNGDLSS----LNPPLEKIDI 387 L + +W L+G + L PP+ I I Sbjct: 373 VLQGRPSEWHPLSGLTPAPGGPLQPPMATIQI 404 >gi|225435708|ref|XP_002283489.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147854540|emb|CAN78578.1| hypothetical protein VITISV_013679 [Vitis vinifera] Length = 612 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 214/384 (55%), Gaps = 24/384 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP+ L D+ AQTG+GKTA+F P+++ Sbjct: 155 FAEIDLGEALNQNIKRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISG 214 Query: 63 LEKGRARVRMPR--------TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + KG+A R PR LIL PTREL+ Q+ D +K+ + V + GG P Sbjct: 215 IMKGQASQRPPRGARTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPISQ 274 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERG D+L+ TPGR++D R ++ + I L +DEADRMLDMGF P I+ I + Sbjct: 275 QLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQM 334 Query: 175 PF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230 RQT+LFSAT E+QK++ +FL N + V S+ + I + + Sbjct: 335 DMPPQGVRQTMLFSATFPKEIQKLASDFLSNYVFLAVGRVGSSTDLIVQ--RVEFVHDTD 392 Query: 231 KCALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 K + L LL +Q NG+ +F KK +L H L GF IHG+ Q+ Sbjct: 393 KRSHLMDLLHAQ--RANGVHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQ 450 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R + L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ Sbjct: 451 EREQALRSFKSGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKT 510 Query: 343 GKAFTLVAKEDIKHIDAIEKLIEK 366 G A + A+ +L+++ Sbjct: 511 GLATAFFNDNNSSLAKALSELMQE 534 >gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata] Length = 502 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 145/390 (37%), Positives = 226/390 (57%), Gaps = 18/390 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D GL P + V AGY KPTPIQ IP +L D+ G AQTG+GKTA+F+LP+LT Sbjct: 59 FEDAGLLPTFLKNVQRAGYTKPTPIQKHAIPSILAGRDLMGCAQTGSGKTAAFILPVLTA 118 Query: 63 LEKG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + K + + P+T+++ PTRELA+Q+ K+ ++ ++ GG+ Q Sbjct: 119 MVKEGLTCSPMSEFQEPQTIVVAPTRELASQIYTEARKFALRTDVRPVVVYGGVSVAHQL 178 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +++E GA++++ TPGR+LD RGK+ + ++ L++DEADRMLDMGF P I+ + + Sbjct: 179 RQVESGANLVVGTPGRLLDFIERGKISVKKVKFLILDEADRMLDMGFEPSIRKLVESLGM 238 Query: 177 ----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 RQTL+FSAT E+Q+++ +F+ + I V +E F+ +K Sbjct: 239 PSKSERQTLMFSATFKAEIQQLAADFMNDYLFITVGIVGGACSDVEQTFLEV--DRLQKR 296 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L +L S T + ++F QK+N L L + G+ +IHG+ QR R + L +FK Sbjct: 297 EYLCDILNSSGTNRV-LVFVGQKRNADFLASFLSQSGYPTTSIHGDRLQREREEALMDFK 355 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G +++A+++AARGLDIPDV HV N+D+P + Y+HRIGRTGR G GKA + +++ Sbjct: 356 RGKSPVLIATNVAARGLDIPDVTHVVNYDLPTDIDEYVHRIGRTGRCGNLGKATSFYSQD 415 Query: 353 -DIKHIDAIEKLI----EKKVDWLNGDLSS 377 D ++ K++ ++ DWL S Sbjct: 416 TDFALASSLVKILSEARQEVPDWLTAHADS 445 >gi|284053417|ref|ZP_06383627.1| DEAD/DEAH box helicase-like protein [Arthrospira platensis str. Paraca] Length = 465 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 222/361 (61%), Gaps = 6/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+S + + G+ +PTP+QI+ IP +L DV G+AQTGTGKTA+F LP+L Sbjct: 5 FESLGISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQ 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ A ++ L+L PTRELA QV + + + L V + GG + Q ++L RG Sbjct: 65 IDVHAAGIQ---ALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQRLRRG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181 V++ TPGRILD NRG+L ++++ LV+DEAD ML MGFI ++ I S RQT Sbjct: 122 VQVVVGTPGRILDLLNRGELKLDSLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQTA 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM + K+ L++P ++V TP +T + IE +SK AL + +L+ Sbjct: 182 FFSATMDASISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARAL-EPILEL 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D ++ IIF K++ +L + L+ G SV HGN++Q R ++L + ++ +VA Sbjct: 241 EDP-ESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P++ ++Y+HRIGRTGRAGR GKA TL+ D + + IE Sbjct: 300 TDIAARGLDVDHLTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLIQPIDRRKLRNIE 359 Query: 362 K 362 + Sbjct: 360 R 360 >gi|268591855|ref|ZP_06126076.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131] gi|291312828|gb|EFE53281.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131] Length = 457 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 226/370 (61%), Gaps = 9/370 (2%) Query: 3 FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FADL LS + + + + GY+ T IQ +P +L DV A+TG+GKTA+F L +L Sbjct: 4 FADLNALSAEQLTNLQELGYLNMTQIQAAALPPILAGKDVRAQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ A++ ++L+L PTRELA QVA+ + + N+ + L GG+PF Q L Sbjct: 64 HID---AKLFKTQSLVLCPTRELADQVANELRRLARAIPNIKILTLCGGVPFSVQRDSLA 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 A +++ TPGR+LDH NR + ++ ++ LV+DEADRMLDMGF+P I+ I P RQT Sbjct: 121 HAAHIIVATPGRLLDHLNRETVQLDALQTLVLDEADRMLDMGFMPDIETIIDYAPINRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +E+ ++S+ NP+ IE+N+ +E F +K LLQ+LL Sbjct: 181 LLFSATWPEEIARISQQIQNNPQTIEINSVDELP-AVEQQFYEVARH--EKIELLQKLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++FCN KK+ + +L SV +HG+++QR R + L F G+ +++V Sbjct: 237 SREQPASCVVFCNTKKDCQAVYDALTASKQSVLVLHGDMEQRERDQTLVRFANGSSRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDI + V N+++ E ++HRIGRT RAG G A +L A E+ + +A+ Sbjct: 297 ATDVASRGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANAL 356 Query: 361 EKLIEKKVDW 370 E+++ K++W Sbjct: 357 EEMLNMKLNW 366 >gi|113968755|ref|YP_732548.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-4] gi|114049101|ref|YP_739651.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-7] gi|123030016|sp|Q0HN76|RHLB_SHESM RecName: Full=ATP-dependent RNA helicase rhlB gi|123326096|sp|Q0HQL1|RHLB_SHESR RecName: Full=ATP-dependent RNA helicase rhlB gi|113883439|gb|ABI37491.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] gi|113890543|gb|ABI44594.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 439 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 149/393 (37%), Positives = 238/393 (60%), Gaps = 17/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FADL L P+V A+ + G+ TPIQ ++P++LQ D+ G AQTGTGKT +F++ Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T + + R ++ PR +I+ PTRELA Q+A + K+ +L V ++ GG ++ Q K Sbjct: 71 LLSTPIPENR-QLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+LI T GRI+D+ +G + +N I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 VLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q L LFSAT++ ++Q+++ + + +P ++E+ T++ I E F Y K L Sbjct: 190 DQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIF---YPSQEDKIRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ +D + I+F N K + NL LE G V + G++ Q+ R++IL F +G Sbjct: 247 LLTLIE-EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGD----LSSLNPPLE 383 ++ AIE I + N D L + PP++ Sbjct: 366 LNLPAIESYINHSIPVSNYDRDALLDDIPPPVK 398 >gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 454 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 7/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP++L D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ I+V + T TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLI 364 EK + Sbjct: 360 EKTL 363 >gi|124002116|ref|ZP_01686970.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134] gi|123992582|gb|EAY31927.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134] Length = 571 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 220/368 (59%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F ++GL +++ AV + G+ KPTPIQ + IP +L + D+ AQTGTGKTA+F LP+L Sbjct: 4 FEEIGLRSEILQAVQELGFEKPTPIQEQAIPYLLTEETDLLAFAQTGTGKTAAFSLPLLE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ +++ LIL PTREL Q+A + + + K + + GG + Q L+R Sbjct: 64 SIDPDSKQIQ---ALILCPTRELCLQIARDIQSFAKFMKIRTTAVYGGASIDKQIDALKR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR LD R KL + I+ LV+DEAD ML+MGF + I + P +QTL Sbjct: 121 GVHIVVGTPGRSLDLIKRKKLKLEQIQWLVLDEADEMLNMGFKQELDAILATTPKEKQTL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM EL +++E ++ PK+I V +S A+ + H F Q + L+++ Sbjct: 181 LFSATMPQELIRIAEQYMHQPKKISVGQRNSGAKNVSHEFYVV--QPRDRYQALKRIADI 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + GI+FC ++ ++ + L + G++ A+HG++ Q R ++ F+ +Q++VA Sbjct: 239 NPHI-YGIVFCRTRRETKDIANKLIQDGYNADALHGDLSQAQRDHVMGRFRSRHLQILVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ HV NF++P+ E YIHR GRTGRAG+ G + ++ + I IE Sbjct: 298 TDVAARGLDVDEITHVINFNLPDDLEVYIHRSGRTGRAGKTGVSLLIIGGREAGKIKTIE 357 Query: 362 KLIEKKVD 369 + I KK D Sbjct: 358 RKIGKKFD 365 >gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii] gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii] Length = 567 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 219/381 (57%), Gaps = 7/381 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +G P ++ + AG+ PTPIQ + P+ L D+ IA+TG+GKT F+LP + Sbjct: 127 FESVGFPPDILDEIRRAGFKSPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLPGMLH 186 Query: 63 LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ R R+ P L+L PTRELA Q+ +K+G++ + + GG P Q + L+ Sbjct: 187 IQATRKDARVGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQLRDLQY 246 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR+ D G++ + + LV+DEADRMLDMGF P IQ I +P RQTL Sbjct: 247 GVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPRQRQTL 306 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ----YSKKCALLQQ 237 FSAT E++ ++ F+ N + + V + + + + Y +K A L + Sbjct: 307 FFSATWPREVKHIASQFVVN-QTVHVFIGGVEEKLVANKSITQYVSVVNGMHEKFAELAK 365 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++++ IIFC K+ L + + ++ F AIHG+ Q R +L FK+G Sbjct: 366 IIRAKPPGTRIIIFCTTKRMCDQLSYQMGRE-FRSAAIHGDKKQSERDYVLQAFKDGRTP 424 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP+V V NFD P E+YIHRIGRTGRAG G+++T +++ED KH Sbjct: 425 ILVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGESYTFMSQEDAKHA 484 Query: 358 DAIEKLIEKKVDWLNGDLSSL 378 + +++ + ++ +L L Sbjct: 485 RDLMQVMREAGQTISPELEQL 505 >gi|186474785|ref|YP_001856255.1| ATP-dependent RNA helicase DbpA [Burkholderia phymatum STM815] gi|184191244|gb|ACC69209.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum STM815] Length = 463 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 151/394 (38%), Positives = 220/394 (55%), Gaps = 18/394 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L LS V+ + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 8 FSELPLSQAVLANLTQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QV + + N+ V L GG P Q LE Sbjct: 68 LDARRYAVQ---AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH RG L ++ + LV+DEADRMLDMGF I + P RQTL Sbjct: 125 GAHIVVGTPGRIMDHLERGSLSLDALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTL 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ FL+NPK +++ ++ + + T ++ + QLL Sbjct: 185 LFSATYPEGIAKLSQQFLRNPKEVKLEERHDDSKIRQRFYEVT---EDERLHAVGQLLNH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 242 YRPVST-IAFCNTKNQCRDLLDVLCAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + ++ + AIE Sbjct: 301 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIE 360 Query: 362 KLIEKKVDWLNGDLSSLN--------PPLEKIDI 387 + + V+W L+ LN PP+E + I Sbjct: 361 EAQGRDVEW--HPLAELNAASDEPLLPPMETLQI 392 >gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1] gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1] Length = 580 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 144/386 (37%), Positives = 225/386 (58%), Gaps = 21/386 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DLG+S +++ +V + GY +P+ IQ + IP VL DV G AQTGTGKTA+F +P++ Sbjct: 5 LKFSDLGISSEILKSVEEMGYTQPSQIQSQAIPFVLDGRDVIGQAQTGTGKTAAFGIPII 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 +++ +V+ +IL PTRELA QV +K K + + + GG + Q + L Sbjct: 65 DLVDPDFNKVQ---AVILCPTRELAVQVEGEIQKLAKYHRKINSVAIYGGESIDRQIRVL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G +++ TPGR+ DH NRG L + N I+V+DEAD MLDMGF I+ I +P RQ Sbjct: 122 RKGVQIVVGTPGRVQDHINRGTLKLENTGIIVLDEADEMLDMGFRDDIEAILQEMPEKRQ 181 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+ FSATM + ++ + NP+ I+V T + IE F Y K +L +L+ Sbjct: 182 TVFFSATMAKPILDLTRKYQNNPEIIKVAKKELTVDRIEQVF------YEVKPSLKLELM 235 Query: 240 QSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + N ++FCN K+ +L +G A+HG++ Q R K+++ F++G Sbjct: 236 ARLMNVNNYALSVVFCNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLC 295 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-AKEDIK 355 ++VA+D+AARG+D+ +V VFNFD+P E+Y+HRIGRTGRAG+ GKA V + D Sbjct: 296 TVLVATDVAARGIDVDNVEAVFNFDLPLDDESYVHRIGRTGRAGKSGKAINFVTGRRDFG 355 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPP 381 I +E+ + ++ ++PP Sbjct: 356 KIRDLER-------FTKASIAKMDPP 374 >gi|117921774|ref|YP_870966.1| ATP-dependent RNA helicase SrmB [Shewanella sp. ANA-3] gi|117614106|gb|ABK49560.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 419 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 219/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G++ PT IQ +T+P L++ D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LIL PTRELA+Q+ L +A++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRYSGHARILILTPTRELASQIHRYACHLATGQGLNIAIITGGVPYGPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR++++ ++GK +++IL+IDEADRMLDMGF ++ I +Q Sbjct: 121 KDNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ + + + L +P I+V+ P I H ++ K ALL L Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLADDKEHKIALLCYL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D +K I+F + V +L L K G + G+++Q+ R + LS F +G + + Sbjct: 240 LKQED-VKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV NFD+P A++YIHRIGRTGRAG G A +L D++ + Sbjct: 299 LLATDVAARGIDIDDISHVINFDMPRSADSYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 359 KIERYIEQ 366 >gi|34581357|ref|ZP_00142837.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246] gi|28262742|gb|EAA26246.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246] Length = 410 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 216/364 (59%), Gaps = 13/364 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 3 NFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 62 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K +Y + A+LIGG P Q +L++ Sbjct: 63 KNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNPK 117 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P RQ L+FS Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + VS+ +L NP RI V + A I E V+ ++S AL +QL + Sbjct: 178 ATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTKQLGNRE 234 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ IIF K++ L L+ + + AIHG++ QR R +++ +F++ ++MVA+ Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ AI++ Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351 Query: 363 LIEK 366 L+ K Sbjct: 352 LVNK 355 >gi|304312547|ref|YP_003812145.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium HdN1] gi|301798280|emb|CBL46502.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium HdN1] Length = 716 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 157/434 (36%), Positives = 251/434 (57%), Gaps = 20/434 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L L P++ + + G+ TPIQ + +PL L++ D+ G AQTGTGKTA+F++ ++ Sbjct: 264 LPFSALALDPRLQKGIDELGFSHCTPIQSEALPLSLKQRDIIGKAQTGTGKTAAFLITII 323 Query: 61 -TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T+L + R PR LIL PTRELA Q+ + K+ +L + ++GG+ ++ Q Sbjct: 324 QTLLTEPEQEERYNGEPRALILAPTRELALQIEKDALPLLKHTSLNMVSIVGGMDYKKQQ 383 Query: 117 KKLERG-ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 K L+ D+++ TPGR++D F RGK L ++ EILVIDEADRMLDMGFIP ++ + Sbjct: 384 KHLQDEIVDIVVGTPGRLID-FVRGKDLFLSETEILVIDEADRMLDMGFIPDVKRLVRET 442 Query: 175 PFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKK 231 P+ RQTLLFSAT T ++ ++ N+ +P +IE+ S + A + ++ T Q K Sbjct: 443 PYKTYRQTLLFSATFTRDIINLASNWTTDPAQIEIEPESVANASVDQKIYIVTAEQ---K 499 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 +L L+ Q+ + ++F N++ +L L+ G V + G I Q R++ L NF Sbjct: 500 INVLYNLITQQE-LDRVMVFVNRRDETRDLTTRLKALGLRVAMLSGEIPQHKRLRTLENF 558 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G +++MVA+D+A RG+ I + HV N+ +P E+Y+HRIGRTGRAG G + + + Sbjct: 559 RNGRLRVMVATDVAGRGIHIEGISHVVNYTLPEDPEDYVHRIGRTGRAGATGTSVSFACE 618 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLN--PPLEKIDIAQHNHA--RKNNPIPQKSTGFD 407 ED + AI+ L+ +++ + D L P + +H H R + PQ+ G D Sbjct: 619 EDAFLLPAIQALLGEEIQCTHPDADLLADLPEIITSQPTEHTHTEHRTEHRRPQRRGGGD 678 Query: 408 R--RKKNYSSQKSH 419 R +N +S SH Sbjct: 679 RNSHSRNSNSHNSH 692 >gi|153002036|ref|YP_001367717.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS185] gi|217974608|ref|YP_002359359.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS223] gi|304410566|ref|ZP_07392184.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307304659|ref|ZP_07584409.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|151366654|gb|ABS09654.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|217499743|gb|ACK47936.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] gi|304351050|gb|EFM15450.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306912061|gb|EFN42485.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 419 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 216/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G+ PT IQ +TIP L++ D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDFQLDPSLLESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LIL PTRELA+Q+ L +A++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRFAGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+L+ TPGR++++ ++G ++IL+IDEADRMLDMGF +Q I +Q Sbjct: 121 AGNVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ +Q+ + L +P I+V P S I H ++ K ALL L Sbjct: 181 NMLFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKI-HQWIHLADDKEHKFALLCHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D +K I+F + V +L L K G + + G+++Q+ R + LS F +G + + Sbjct: 240 LRQED-VKRTIVFVKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV NFD+P A+ YIHRIGRTGRAG G A +L D++ + Sbjct: 299 LLATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 359 KIERYIEQ 366 >gi|75906865|ref|YP_321161.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC 29413] gi|75700590|gb|ABA20266.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC 29413] Length = 513 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 136/349 (38%), Positives = 207/349 (59%), Gaps = 5/349 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LG+S + V + G+ PT IQ + IP +L DV G +QTGTGKTA+F LP+L Sbjct: 3 LSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + V+ ++L PTRELA QV D ++ N L + GG + Q +L+ Sbjct: 63 ERLDPQQKAVQ---AIVLTPTRELAIQVHDAMAQFIGNSGLRTLAIYGGQSIDRQMLQLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D RG L ++ ++ V+DEAD ML MGFI ++ I S P RQT Sbjct: 120 RGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQERQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++ + FL++P + V P +T I ++K A LQ +L+ Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARA-LQPILE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + +IF ++ L L+ G SV HG++ Q++R ++L+ F+ ++ +V Sbjct: 239 MEDP-ETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 A+D+AARGLD+ + HV N+D+P+ E Y+HRIGRTGRAG+ G A TLV Sbjct: 298 ATDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLV 346 >gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii] gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii] Length = 442 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 148/387 (38%), Positives = 227/387 (58%), Gaps = 9/387 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA+L L+ + + AG+ PTPIQ IPL L+ D+ A+TG+GKT +F++P++ Sbjct: 2 VSFAELSLTSFLADRLQQAGFTAPTPIQSAAIPLALEGRDLLAQAKTGSGKTLAFLIPLI 61 Query: 61 --TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + E K R PR L+L PTRELA Q+ KY ++T + GG+P E Sbjct: 62 ERAVKEGWKPAGSARSPRALVLAPTRELALQIEMELRKYAPP-SVTSLAVYGGVPIERHY 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L + ++I TPGR+LD L + IE +V+DEAD+MLD GF+ IQ I L+P Sbjct: 121 RALRQPPMIVIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRILQLLPS 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT+LFSAT + E+ ++E+ L+NP R V+ +T TI H + ++ S + L+ Sbjct: 181 QRQTMLFSATFSPEILTLAESMLKNPARTAVDPGVNTPTTITHAYYVVPSE-SSRVQLIH 239 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LLQS ++ ++FC+QK V L L + SV AI GN Q R + L+ F+ G + Sbjct: 240 TLLQSPESGDQSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTLTAFRSGRL 299 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIK 355 + +VA+D+AARGLD+P V V ++++P +Y+HR GRTGRA R G +++ KE+ + Sbjct: 300 RTLVATDVAARGLDVPSVSQVIHYELPGNPTSYVHRTGRTGRAERSGATLLILSPKEEHE 359 Query: 356 HIDAIEKL-IEKKVDWLNGDLSSLNPP 381 ++ + +L I+ K L L+ L PP Sbjct: 360 YLAMVRRLRIQTKRLTLPA-LAVLPPP 385 >gi|224437667|ref|ZP_03658614.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818] gi|313144114|ref|ZP_07806307.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818] gi|313129145|gb|EFR46762.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818] Length = 513 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 219/366 (59%), Gaps = 7/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL V+ + +AG+ P+P+Q ++IP+VLQ D+ AQTGTGKTA+F +P+L Sbjct: 20 FETFGLKDFVLKGIKEAGFSSPSPVQAQSIPIVLQGKDLIAQAQTGTGKTAAFSIPILNA 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +R + L++ PTRELA Q+++ K G+ + + GG + Q LE+ Sbjct: 80 L----SRNKEIEALVITPTRELAMQISEEVLKLGRFGRIKTICMYGGQSIKRQCDLLEKK 135 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH G++ +++V+DE+D MLDMGF+ I+ I +P T QTLL Sbjct: 136 PKVMIATPGRLLDHLQNGRIENFAPKVVVLDESDEMLDMGFLDDIEEIFKFLPNTHQTLL 195 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++ ++ L P+ +++ T + IE + ++ + +LL++Q Sbjct: 196 FSATMPEPIKNLALKILDKPEFVKITPTDITNKDIEQQYY--IINEGERDEAIVRLLETQ 253 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + K+ IIF KK L L +GF A+HG+++Q R + FKE I+L+VA+ Sbjct: 254 NPTKS-IIFTRTKKEADALATRLVTKGFKAMALHGDMEQWDRRTAIKAFKENEIELLVAT 312 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI DV HVFN+ +P E+Y+HRIGRTGRAG+ G A TL + K + I++ Sbjct: 313 DVASRGLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEYKDLSKIKQ 372 Query: 363 LIEKKV 368 + + K+ Sbjct: 373 ITKAKL 378 >gi|206974096|ref|ZP_03235014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|217959967|ref|YP_002338523.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|229139159|ref|ZP_04267734.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26] gi|206748252|gb|EDZ59641.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|217065592|gb|ACJ79842.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|228644218|gb|EEL00475.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26] Length = 454 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 151/416 (36%), Positives = 238/416 (57%), Gaps = 28/416 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LG+S + + G + TPIQ + IP++L D+ G A+TGTGKT +FVLP Sbjct: 6 NFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLP--- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLE 120 ILEK + LI+ PTRELA Q+ +K + ++ V + GG Q +KL+ Sbjct: 63 ILEKIDPECSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH R + ++N+ +V+DEAD+ML GF+ I++I P ++QT Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +++K+++ ++ P+ ++V + T TIE + T +K AL + + Sbjct: 183 MLFSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIET-TDRAKPDAL--RFVM 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D +IFC K L +L+ G++ +HG+I Q R +++ +F+E IQ ++ Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D KH++ I Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNN-------PIPQKSTGFDRR 409 EK +L P+++ I Q R + P P+KS + +R Sbjct: 360 EK--------------TLGAPIQREIIEQPKIKRVDENGKPVPRPAPKKSGEYRQR 401 >gi|255319837|ref|ZP_05361042.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82] gi|262380369|ref|ZP_06073523.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255303156|gb|EET82368.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82] gi|262297815|gb|EEY85730.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 618 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 144/378 (38%), Positives = 225/378 (59%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ D G+ PT +Q + IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIP 111 L E+ RA V P L++ PTRELA QV D + +A ++GG+P Sbjct: 65 LADQDTFLPFKERMRA-VTQPNILVISPTRELAQQVCQDAIALVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR ++ ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAIS 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L +QTL+FSAT D + +++E +++P RI + T ST I T + K Sbjct: 183 ELALNRKQTLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTDITQTLHWTDG-FEHK 241 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L+ + T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 242 KKLLTHWLEDE-TLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGKAITLATY 360 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E +E +++ Sbjct: 361 RERGKIRALEDYLETRLN 378 >gi|157374029|ref|YP_001472629.1| ATP-dependent RNA helicase SrmB [Shewanella sediminis HAW-EB3] gi|157316403|gb|ABV35501.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 408 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 217/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L P ++ ++ G+ KPT IQ + IPL + + D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDLLLDPILLESLKAMGHHKPTTIQQQAIPLAMDQRDILARAPTGTGKTASFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LIL PTRELA+Q+ + ++ GG+P+ Q L Sbjct: 61 QHLIDFPRRFSGQARILILTPTRELASQIHRYASHLASELDFNTVIITGGVPYGPQEDAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR++++ ++G+ +E+LVIDEADRMLDMGF ++ + +Q Sbjct: 121 KGNVDILVATPGRLMEYLDKGQFNAEEVEMLVIDEADRMLDMGFSAAVETLAIESVGRKQ 180 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T+LFSAT+ ++ + S L +P ++E P S I H ++ K LL + Sbjct: 181 TMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKI-HQWIHIADNKDHKFNLLCSI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ ++T K I+F ++ V +L L+K G + G+++Q+ R + L F +G + + Sbjct: 240 LQQEET-KRAIVFVKTREAVASLEGLLQKAGIPCSFMRGDMEQKQRFQALGRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ D+ HV NFD+P A+ Y+HRIGRTGRAG G A +LV DI+ + Sbjct: 299 LLATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVG 358 Query: 359 AIEKLIEK 366 IE+ +++ Sbjct: 359 KIERYMDQ 366 >gi|221311883|ref|ZP_03593730.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|221316207|ref|ZP_03598012.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321119|ref|ZP_03602413.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. JH642] gi|221325403|ref|ZP_03606697.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. SMY] gi|255767828|ref|NP_391790.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|254763269|sp|P42305|DBPA_BACSU RecName: Full=ATP-dependent RNA helicase dbpA gi|225185456|emb|CAB15947.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 479 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 215/362 (59%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + +S ++ A+ GY +PT +Q IP L+R D+ +QTG+GKTASF +P+ + Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + P+ LIL PTRELA QV ++ G+ + + G F+ Q +L++ Sbjct: 64 ANWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 + +++ TPGR+LDH +G L ++ + LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 121 SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++K+S ++QNP+ IEV T IEH + + K +LL+ +L ++ Sbjct: 181 FSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREE--NKFSLLKDVLMTE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC K++V L L+ G+ IHG + Q R +++ FK G + +VA+ Sbjct: 239 NP-DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ V N+D+P E+Y+HR GRTGRAG GKA + V + + + IE+ Sbjct: 298 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357 Query: 363 LI 364 I Sbjct: 358 YI 359 >gi|42522929|ref|NP_968309.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] gi|39574125|emb|CAE79302.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] Length = 656 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 217/362 (59%), Gaps = 15/362 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60 +F GLS V+ A+ D G+ PTPIQ + +P++L +D G+A TGTGKTA+F +P++ Sbjct: 45 NFESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLI 104 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + V+ + L+L PTRELA QVA+ GK + V + GG + Q ++ Sbjct: 105 ENID---STVKDTQALVLSPTRELALQVAEQLTLLGKKKGVRVVTIYGGASYRTQIDGIK 161 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL------- 173 RGA +++ TPGR++D + + + +++ +V+DEAD ML MGF ++ I S Sbjct: 162 RGAHIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSD 221 Query: 174 -VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 V +T LFSATM+ E+++++ +L+NP+ + VN TA+TIE + Y K Sbjct: 222 SVRAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSY--KT 279 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ +LLQ+ GIIFC K V L L ++GF ++HG+ Q+ R L FK Sbjct: 280 EVIGRLLQTLPEF-YGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFK 338 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 + ++++VA+D+AARGLDI D+ HV N +P +E+Y+HRIGRTGR G+ G A TLV E Sbjct: 339 QRQVKVIVATDVAARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPE 398 Query: 353 DI 354 + Sbjct: 399 QL 400 >gi|665989|dbj|BAA11693.1| deaD [Bacillus subtilis] Length = 479 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 215/362 (59%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + +S ++ A+ GY +PT +Q IP L+R D+ +QTG+GKTASF +P+ + Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + P+ LIL PTRELA QV ++ G+ + + G F+ Q +L++ Sbjct: 64 ANWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 + +++ TPGR+LDH +G L ++ + LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 121 SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++K+S ++QNP+ IEV T IEH + + K +LL+ +L ++ Sbjct: 181 FSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREE--NKFSLLKDVLMTE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC K++V L L+ G+ IHG + Q R +++ FK G + +VA+ Sbjct: 239 NP-DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ V N+D+P E+Y+HR GRTGRAG GKA + V + + + IE+ Sbjct: 298 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357 Query: 363 LI 364 I Sbjct: 358 YI 359 >gi|17228718|ref|NP_485266.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120] gi|17130570|dbj|BAB73180.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120] Length = 513 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 136/349 (38%), Positives = 207/349 (59%), Gaps = 5/349 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LG+S + V + G+ PT IQ + IP +L DV G +QTGTGKTA+F LP+L Sbjct: 3 LSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + V+ ++L PTRELA QV D ++ N L + GG + Q +L+ Sbjct: 63 ERLDPQQKAVQ---AIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D RG L ++ ++ V+DEAD ML MGFI ++ I S P RQT Sbjct: 120 RGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++ + FL++P + V P +T I ++K A LQ +L+ Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARA-LQPILE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + +IF ++ L L+ G SV HG++ Q++R ++L+ F+ ++ +V Sbjct: 239 MEDP-ETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 A+D+AARGLD+ + HV N+D+P+ E Y+HRIGRTGRAG+ G A TLV Sbjct: 298 ATDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLV 346 >gi|167574569|ref|ZP_02367443.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis C6786] Length = 465 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 212/375 (56%), Gaps = 14/375 (3%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GYV TPIQ ++P+ L HD+ A+TG+GKTA+F LP+L L+ R V+ ++L Sbjct: 27 GYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLPLLARLDARRFDVQ---AMVLC 83 Query: 80 PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QV + + N+ V L GG P Q LE GA +++ TPGRI+DH Sbjct: 84 PTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGRIMDHLE 143 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG L + + LV+DEADRMLDMGF I + P RQTLLFSAT D + K+S+ F Sbjct: 144 RGSLALGALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPDGIAKLSQQF 203 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 L+NPK +++ ++ + + T + +L + T+ FCN K+ Sbjct: 204 LRNPKEVKLEERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLA----FCNTKQQC 259 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +L L QGF A+HG +DQR R ++L F + ++VA+D+AARGLDI + V Sbjct: 260 RDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI 319 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW-----LNG 373 N DV E ++HRIGRTGRA + G A +L + ++ + +IE+ ++ V+W L Sbjct: 320 NVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWHPLAELEA 379 Query: 374 DLSS-LNPPLEKIDI 387 + + L PP+E + I Sbjct: 380 ESDAPLLPPMETLQI 394 >gi|167567410|ref|ZP_02360326.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis EO147] Length = 465 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 212/375 (56%), Gaps = 14/375 (3%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GYV TPIQ ++P+ L HD+ A+TG+GKTA+F LP+L L+ R V+ ++L Sbjct: 27 GYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLPLLARLDARRFDVQ---AMVLC 83 Query: 80 PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QV + + N+ V L GG P Q LE GA +++ TPGRI+DH Sbjct: 84 PTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGRIMDHLE 143 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG L + + LV+DEADRMLDMGF I + P RQTLLFSAT D + K+S+ F Sbjct: 144 RGSLALGALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPDGIAKLSQQF 203 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 L+NPK +++ ++ + + T + +L + T+ FCN K+ Sbjct: 204 LRNPKEVKLEERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLA----FCNTKQQC 259 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +L L QGF A+HG +DQR R ++L F + ++VA+D+AARGLDI + V Sbjct: 260 RDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI 319 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW-----LNG 373 N DV E ++HRIGRTGRA + G A +L + ++ + +IE+ ++ V+W L Sbjct: 320 NVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWHPLAELEA 379 Query: 374 DLSS-LNPPLEKIDI 387 + + L PP+E + I Sbjct: 380 ESDAPLLPPMETLQI 394 >gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088] gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088] Length = 462 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 147/364 (40%), Positives = 212/364 (58%), Gaps = 12/364 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L +SP + ++ GY TP+Q ++IPL+L+ D+ A+TG+GKTA+F + + Sbjct: 6 FSKLNISPAQLKSLEALGYKAMTPVQEQSIPLILKGRDLVVRAKTGSGKTATF---GIGL 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L K R + L+L PTRELA QV + N+ V +L GG PF AQ L+ Sbjct: 63 LNKINPRFFGAQALVLCPTRELADQVGAEIRRLASQMPNIKVVMLCGGKPFGAQRDSLQH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI DH +G L ++ + LV+DEADRMLDMGF +Q I + VP RQTL Sbjct: 123 GAHVVVGTPGRIHDHLTKGTLQIDQVSTLVLDEADRMLDMGFADTMQAIIAEVPKNRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-TIEHCF--VATYAQYSKKCALLQQL 238 LFSAT D +QK+S + NP ++V+ + E IE F + + +Y AL + Sbjct: 183 LFSATYPDNIQKISRSIQANPAMVQVDDDVAHEEGVIEQLFFEIKKHERYPTLLALFEHY 242 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 KN +FCN KK + L + A+HG++DQR R ++L F G+ + Sbjct: 243 -----RPKNAAVFCNTKKQCAEVADFLNEHDIEAKALHGDMDQRERDQVLLQFANGSCPV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + V N+++P E Y+HRIGRTGRAG G AF+LV + + + Sbjct: 298 LVATDVAARGLDIKSLAMVVNYELPRDPEIYVHRIGRTGRAGETGLAFSLVTESETPRLR 357 Query: 359 AIEK 362 IE+ Sbjct: 358 QIEQ 361 >gi|15892943|ref|NP_360657.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7] gi|15620136|gb|AAL03558.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7] Length = 414 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 219/370 (59%), Gaps = 15/370 (4%) Query: 1 MDF--ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58 MD+ + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP Sbjct: 1 MDYIMKNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLP 60 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++ K + LIL PTRELA Q+ K +Y + A+LIGG P Q + Sbjct: 61 LIDSFIKNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFIQ 115 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++ V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P R Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQ 236 Q L+FSATM + VS+ +L NP RI V + A I E V+ ++S AL + Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTK 232 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL + ++ IIF K++ L L+ + + AIHG++ QR R +++ +F++ Sbjct: 233 QLGNREGSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNH 289 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++MVA+D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ Sbjct: 290 RIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 349 Query: 357 IDAIEKLIEK 366 AI++L+ K Sbjct: 350 WRAIDRLVNK 359 >gi|294139497|ref|YP_003555475.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12] gi|293325966|dbj|BAJ00697.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12] Length = 408 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 220/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G+ KPT IQ +TIPL +++ D+ A TGTGKTASF+LP + Sbjct: 1 MLFEDFLLDPILLESLKAMGHNKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAI 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R L+L PTRELA+Q+ + +L +A++ GG+P+ Q L Sbjct: 61 QHLIDFPRRFGGQARVLVLTPTRELASQIHRYASHLSTDLDLDIAIITGGMPYGPQEDAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR++++ ++G +E+ VIDEADRMLDMGF ++ + +Q Sbjct: 121 KNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRKQ 180 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T+LFSAT+ ++ + S L NP ++E P S I H ++ K A+L + Sbjct: 181 TMLFSATLEGSDVGRFSHQLLTNPVKVEAEAPRSEKAKI-HQWIHIADNKEHKFAMLCNI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D + I+F ++ V +L L+++G + G+++Q+ R + L F +G + + Sbjct: 240 LRQEDVTRT-IVFVKTREGVASLEGLLQREGIICSFMRGDMEQKQRFQALGRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ D+ HV NFD+P A+ Y+HRIGRT RAG G A +LV DI+ + Sbjct: 299 LLATDVAARGIDVDDISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLVEAHDIRVVG 358 Query: 359 AIEKLIEK 366 IE+ I++ Sbjct: 359 KIERYIDQ 366 >gi|168009544|ref|XP_001757465.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691159|gb|EDQ77522.1| predicted protein [Physcomitrella patens subsp. patens] Length = 452 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 146/392 (37%), Positives = 228/392 (58%), Gaps = 13/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ ++ A G+ PT IQ+ +P+ L+ HD+ G+AQTG+GKTA+F LP+L Sbjct: 21 FRSLGVCEQLAEACDALGWKAPTQIQVDAVPVALKGHDIIGLAQTGSGKTATFALPIL-- 78 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P+ L +L PTRELA Q+A+ FE G L A+L+GGI AQ+ L Sbjct: 79 ----QALLENPQPLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGIDMMAQSVAL 134 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + V++ TPGR++DH K + I+ LV+DEADR+L+M F I I ++P R Sbjct: 135 AKRPHVVVGTPGRLVDHLTNTKGFSLRTIKYLVLDEADRLLNMDFEQEIDEILKVIPKER 194 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +T LFSATMT ++ K+ L+NP ++EV+ ST ++++ ++ A+Y K C L+ L Sbjct: 195 RTYLFSATMTTKVAKLQRACLKNPVKVEVSAKYSTVDSLKQEYLFIPAKY-KDCYLVYIL 253 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + L L GF I G + Q R+ L+ FK G + Sbjct: 254 --NELAGNTAMVFTRTCEATRKLSLVLRNLGFVAIPISGQMSQPKRLGALAKFKAGDCNI 311 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++ +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G+A ++V + D++ Sbjct: 312 LICTDVASRGLDIPSVNLVINYDIPTNSKDYIHRVGRTARAGRSGRAISMVCQYDVELYQ 371 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 IE+LI KK+ + + LE++ AQ Sbjct: 372 KIEELIGKKLPEFSHQQEEVLLMLERVSEAQR 403 >gi|88603077|ref|YP_503255.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei JF-1] gi|88188539|gb|ABD41536.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei JF-1] Length = 531 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 139/351 (39%), Positives = 216/351 (61%), Gaps = 11/351 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL LSP ++ A+ D GY +PTPIQ + IPL+L +DV G A TGTGKTA+F +P + + Sbjct: 6 FSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + V+ T++L P+RELA QV K + +++ + GG P E Q K L R Sbjct: 66 CQPANRNVQ---TIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH R LL++ + ++V+DEAD+MLDMGF I+ I S +P RQT+ Sbjct: 123 GVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ--QLL 239 + SAT E+ +S F +NP +++ T IE ++ + +K L++ + Sbjct: 183 ILSATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVR-EPAKADTLIRVLEFY 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q Q T IIFCN + V + +L+ +GF +HG + Q R K+++ F++G ++++ Sbjct: 242 QPQRT----IIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 +A+D+AARG+D+ ++ V NFD P E Y+HRIGRT RAGR G+A + V+ Sbjct: 298 IATDVAARGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVS 348 >gi|126173085|ref|YP_001049234.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS155] gi|125996290|gb|ABN60365.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 419 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 216/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G+ PT IQ +TIP L++ D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDFQLDPSLLESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LIL PTRELA+Q+ L +A++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRFAGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+L+ TPGR++++ ++G ++IL+IDEADRMLDMGF +Q I +Q Sbjct: 121 AGKVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ +Q+ + L +P I+V P S I H ++ K ALL L Sbjct: 181 NMLFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKI-HQWIHLADDKEHKFALLCHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D +K I+F + V +L L K G + + G+++Q+ R + LS F +G + + Sbjct: 240 LRQED-VKRTIVFVKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV NFD+P A+ YIHRIGRTGRAG G A +L D++ + Sbjct: 299 LLATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 359 KIERYIEQ 366 >gi|254508401|ref|ZP_05120522.1| ATP-dependent rna helicase, dead box family [Vibrio parahaemolyticus 16] gi|219548714|gb|EED25718.1| ATP-dependent rna helicase, dead box family [Vibrio parahaemolyticus 16] Length = 417 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 223/370 (60%), Gaps = 19/370 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGL P +V + + Y++PTPIQ IP VL+ D G A TG+GKTA+F LP+L Sbjct: 10 FADLGLIPTLVERLEELEYLQPTPIQSYAIPHVLEGKDFVGGANTGSGKTAAFSLPILQK 69 Query: 62 ILEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113 ILE+G R+R LIL PTRELA+QVA N + Y +Y+L TVA+ GG+ Sbjct: 70 ILEQGDSNRSRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKVKTVAVF-GGVSVN 126 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L G+D+++ TPGR+LD + + ++ ++ LV+DEADRML +GF + I +L Sbjct: 127 PQMLSLRGGSDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILAL 186 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT +++ ++++ L +P +EV S+ A T ++ F + K Sbjct: 187 LPEKKQTLLFSATFPEKVTTLAQHLLSDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 A+L L++ + +IF N K +L L K+G + HG+ Q +R ++L FK Sbjct: 242 AVLAHLIKKHQ-WRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G IQ+++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G +L+ + Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 361 DYHHFKVIEK 370 >gi|229587022|ref|YP_002845523.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5] gi|228022072|gb|ACP53780.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5] Length = 410 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 216/364 (59%), Gaps = 13/364 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 3 NFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 62 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K +Y + A+LIGG P Q +L++ Sbjct: 63 KNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNPK 117 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P RQ L+FS Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPDKRQVLMFS 177 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + VS+ +L NP RI V + A I E V+ ++S AL +QL + Sbjct: 178 ATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTKQLGNRE 234 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ IIF K++ L L+ + + AIHG++ QR R +++ +F++ ++MVA+ Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ AI++ Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351 Query: 363 LIEK 366 L+ K Sbjct: 352 LVNK 355 >gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus leucogenys] Length = 455 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V+I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 379 EYLIGKKL 386 >gi|325261674|ref|ZP_08128412.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5] gi|324033128|gb|EGB94405.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5] Length = 527 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 223/369 (60%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P++V AV G+ + +PIQ K IP++ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FEDLGLCPEIVKAVKKMGFEEASPIQAKAIPVMKSGKDIIGQAQTGTGKTAAFGIPLLEK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +E +++ ++L PTRELA QVA+ N KY + + V + GG Q + L Sbjct: 66 IEPKNKKLQ---AVVLCPTRELAIQVAEEIRNLAKY--MHGIKVLPIYGGQEIVTQIRSL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++I TPGR++DH R + M+ + +V+DEAD ML+MGF I+ I VP RQ Sbjct: 121 KSGTQLIIGTPGRVMDHMRRKTIKMDEVHTIVLDEADEMLNMGFREDIETILEGVPEERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + +++ F +N + ++V T IE + + K +L +LL Sbjct: 181 TVLFSATMPQAILDITKRFQKNAEIVKVTKKELTVPNIEQYYYEVKPK--SKEEVLARLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + K ++FCN KK V L + L +G+ +HG++ Q+ R +++ F+ G ++ Sbjct: 239 DIY-SPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQQQRDRVMQGFRSGKTDIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V VFN+D+P E Y+HRIGRTGRAGR G++F+ V+ +++ + Sbjct: 298 VATDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRSFSFVSGKEVYKLKE 357 Query: 360 IEKLIEKKV 368 I++ + K+ Sbjct: 358 IQRYCKTKI 366 >gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427] gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM 5427] Length = 371 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 219/368 (59%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LG+SP+++ + +G PTPIQ +TIPL+L DV G AQTGTGKT +F+LP+ Sbjct: 1 MNFKTLGISPEMINHLKKSGITIPTPIQDQTIPLILSGKDVIGEAQTGTGKTLAFLLPLF 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK ++ + L+L PTRELA Q+ +K + + + + GG Q KKL Sbjct: 61 ---EKLSSKSPNIQALVLSPTRELAIQITQEAKKLAEAKAIGILPIYGGQDTAMQLKKLG 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++I TPGR+LDH R + ++ V+DEAD+ML MGF +++IT +P RQT Sbjct: 118 KPVHLVIATPGRLLDHIGRKSIDLSKTTTFVLDEADQMLLMGFKNDVESITKQLPKKRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM ++K++ + +P + + T E I V T ++ K+ ALLQ L Sbjct: 178 LCFSATMDAPVKKLAYRYTSSPTTVTIAKKKITIEAIHQEIVETTDRH-KQAALLQVL-- 234 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+D IIFC K+ V L +++ + ++ +H +I Q R +I+ +FK+G IQ ++ Sbjct: 235 SEDNPYMAIIFCRTKRRVEVLYEAMKDKDYNCVRLHSDILQSKRERIMKSFKKGDIQYLI 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V H++N+DVP E YIHRIGRTGRAG G ++ ++ K + I Sbjct: 295 ATDVAARGLDISGVTHIYNYDVPETPEAYIHRIGRTGRAGNDGYTCMFMSPKNEKEVSEI 354 Query: 361 EKLIEKKV 368 E I K+ Sbjct: 355 EAHIRFKI 362 >gi|209527740|ref|ZP_03276235.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328] gi|209491818|gb|EDZ92178.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328] Length = 465 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 221/361 (61%), Gaps = 6/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+S + + G+ +PTP+Q++ IP +L DV G+AQTGTGKTA+F LP+L Sbjct: 5 FESLGISEQRARHLETLGFTEPTPVQVQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQ 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ A ++ L+L PTRELA QV + + + L V + GG + Q ++L RG Sbjct: 65 IDVHAAGIQ---ALVLTPTRELAMQVKEAIRNFSDDNALYVLTVYGGQSIDRQIQRLRRG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181 V++ TPGRILD NRG+L ++ + LV+DEAD ML MGFI ++ I S RQT Sbjct: 122 VQVVVGTPGRILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQTA 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM + K+ L++P ++V TP +T + IE +SK AL + +L+ Sbjct: 182 FFSATMDPSISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARAL-EPILEL 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D ++ IIF K++ +L + L+ G SV HGN++Q R ++L + ++ +VA Sbjct: 241 EDP-ESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P++ E+Y+HRIGRTGRAGR GKA TL+ D + + IE Sbjct: 300 TDIAARGLDVDHLTHVINYDLPDQVESYVHRIGRTGRAGREGKAITLIQSIDRRKLRNIE 359 Query: 362 K 362 + Sbjct: 360 R 360 >gi|291562141|emb|CBL40957.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium SS3/4] Length = 560 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 222/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P+++ AV D G+ +PIQ + IP+ ++ HD+ G AQTGTGKTA+F +P+L Sbjct: 6 FDELNLDPRILRAVTDMGFEAASPIQAQAIPVEMEGHDMIGQAQTGTGKTAAFGIPLLMK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 ++ R + +IL PTRELA QVA+ + K + + + + GG Q + L+ Sbjct: 66 MDPEN---RKTQAMILCPTRELAIQVAEELRRLAKYMSGIKILPVYGGQEIVKQIRSLKG 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH R + + I +V+DEAD ML+MGF+ ++ I +P RQT+ Sbjct: 123 GVQIIVGTPGRVMDHMRRKTIRTDAIHTVVLDEADEMLNMGFLEDMETILGELPEERQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +FSATM + ++++ F ++PK ++V T + + + K ++ +LL Sbjct: 183 MFSATMPHAIAQIAQKFQKDPKMVQVVKKELTVPKVTQYYYEVKPR--NKVEVMCRLLDL 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K + FCN KK V L +L+ +G+ +HG++ Q R +++ +F+ G +++VA Sbjct: 241 Y-SPKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQEQRDRVMGSFRNGATEILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G+AF+L ++ + I+ Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGRAFSLAVGSEVYKLRDIQ 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RFCKTKI 366 >gi|297582584|ref|YP_003698364.1| DEAD/DEAH box helicase domain-containing protein [Bacillus selenitireducens MLS10] gi|297141041|gb|ADH97798.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens MLS10] Length = 483 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 215/360 (59%), Gaps = 6/360 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GLS ++V A+ + PT +Q + IPL ++ DV +QTGTGKTAS+ +P+ Sbjct: 6 FQAFGLSDEIVRALNELNMTMPTDVQKQVIPLAMENKDVLVTSQTGTGKTASYAIPICDT 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ R P+ LIL PTRELA Q+ ++ G+ + L G P Q +L++ Sbjct: 66 VDWEENR---PQALILSPTRELAVQIQEDITNIGRFRRIKATALYGQEPVNKQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH +G L++N IE LVIDEAD+MLDMGFI ++ I + +P R T L Sbjct: 123 THVVVGTPGRVLDHIKKGTLMLNRIEHLVIDEADQMLDMGFIDQVEAILASLPKERTTSL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +E++ ++ + P +I + + A+TI+ + + +K LLQ + + Sbjct: 183 FSATMRNEIRALAGRHMNAPDQIAIKQETVAADTIDQSVI--HVTNKEKLQLLQDVTVVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + +IFCN +++V L SL K+G+ IHG + Q+ R ++ FK G+ + ++A+ Sbjct: 241 NP-DSCLIFCNTQESVDLLETSLNKEGYRARKIHGGLPQKERFSVMEAFKRGSFRYLIAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 ++AARG+DI V V N+DVP E+Y+HR GRTGRAG+ GKA T V + I +E+ Sbjct: 300 NVAARGIDIDSVSLVINYDVPFEKESYVHRTGRTGRAGKAGKAITFVNNREKSAIRELER 359 >gi|258648289|ref|ZP_05735758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella tannerae ATCC 51259] gi|260852209|gb|EEX72078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella tannerae ATCC 51259] Length = 607 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 223/369 (60%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ ++ A+ + GY P P+Q + IP +L +DV +AQTGTGKTA++ LP Sbjct: 4 FEELGVNEEIRRAIAELGYENPMPVQEEVIPYLLGVGNDVIALAQTGTGKTAAYGLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +L+K R + +IL PTREL Q+AD+ + Y + + L V + GG E+Q + L+ Sbjct: 61 VLQKVDPTQRTTQAVILSPTRELCLQIADDLKDYSRYIDGLHVQAVYGGTSIESQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA V++ TPGR++D RG + N+E +V+DEAD ML+MGF I I + VP R T Sbjct: 121 RGAQVIVATPGRLIDLMERGVAKLENVENVVLDEADEMLNMGFTESIDAILAGVPENRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM+ E+++++ N+L + K I V + + AE + H + A+ K L++++ Sbjct: 181 LFFSATMSREIERIARNYLHDHKEIVVGSRNEGAENVNHTYYLVQAR--DKYHALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC + + +L K G++ A+HG++ Q R + F++ QL++ Sbjct: 239 YYPKIY-GIIFCRTRLETQEVADALIKDGYNAEALHGDLSQAQRDLTMQKFRQHNTQLLI 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ ENYIHR GRTGR G+ G + ++ + I I Sbjct: 298 ATDVAARGLDVDDLTHVINYGMPDDIENYIHRSGRTGRIGKRGASIAIIHLREKGKIRNI 357 Query: 361 EKLIEKKVD 369 E+ I K+ + Sbjct: 358 ERTIGKQFE 366 >gi|301311699|ref|ZP_07217624.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 20_3] gi|300830259|gb|EFK60904.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 20_3] Length = 606 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 220/369 (59%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ ++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA++ LP Sbjct: 4 FEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 IL+K P+ LIL PTREL Q+AD+ Y K NL V + GG E+Q K L+ Sbjct: 61 ILQKINVSQYQPQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++D NR + ++N++ +++DEAD ML+MGF I I + +P R Sbjct: 121 RGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNM 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+ +++ ++++PK I + + + I + AQ K L++L Sbjct: 181 LLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQ--DKYLALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L + G++ ++HG + Q R ++ F+ IQL+V Sbjct: 239 YYPNIY-GIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G A ++ + I I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREI 357 Query: 361 EKLIEKKVD 369 E++I KK D Sbjct: 358 ERIINKKFD 366 >gi|45184660|ref|NP_982378.1| AAL164Cp [Ashbya gossypii ATCC 10895] gi|74695973|sp|Q75F95|DRS1_ASHGO RecName: Full=ATP-dependent RNA helicase DRS1 gi|44980006|gb|AAS50202.1| AAL164Cp [Ashbya gossypii ATCC 10895] Length = 734 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 154/384 (40%), Positives = 222/384 (57%), Gaps = 16/384 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS V+ + GY KP+PIQ TIP+ L DV A TG+GKTA+F++P++ Sbjct: 221 FNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIER 280 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L A++ R L+L PTRELA QVAD +K GK + LT L +GG+ Q + L+ Sbjct: 281 LLYKPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKL 340 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D++I TPGRI+DH N ++++E+LVIDEADRML+ GF + I SL+P RQT Sbjct: 341 RPDIVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELNEIMSLIPSKRQT 400 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ L+ P RI ++ P A + FV + K ALL LL+ Sbjct: 401 LLFSATMNSRIKQLISLSLKKPVRIMIDPPKQAANKLTQEFVRLRKREHLKPALLYHLLR 460 Query: 241 SQDT--MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 D+ K ++F +K+ L L G +HG++ Q R++ ++NFK + + Sbjct: 461 KLDSTGQKRIVVFVARKEVAHRLRVILGLLGMKAGELHGSLTQEQRLQSVNNFKSLDVPV 520 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-------- 350 +V +DLA+RGLDIP + V N+D+P E Y+HR+GRT RAGR GK+ TLV Sbjct: 521 LVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGREGKSVTLVGESTQERSI 580 Query: 351 -KEDIKHIDAIE---KLIEKKVDW 370 K+ IK +D + + + VDW Sbjct: 581 VKDAIKSVDGSKGSGRACGRVVDW 604 >gi|172058976|ref|YP_001815436.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991497|gb|ACB62419.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum 255-15] Length = 481 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 215/360 (59%), Gaps = 6/360 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ A+ GY PT +Q IP+ L D+ ++TG+GKTASF +P+ + Sbjct: 6 FTDFQLSTPILEAIEQLGYHTPTDVQQAVIPVALSEKDIIVKSRTGSGKTASFGIPLCEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ LIL PTRELA QV ++ G+ + + G PF Q +L++ Sbjct: 66 VEWEENK---PQALILTPTRELALQVTEDVMNIGRYKRIKATAVFGKQPFRGQVAELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH RG L + ++ LV+DEAD ML+MGF+ + I +P R T+L Sbjct: 123 THIVVGTPGRVLDHLERGTLSLEKVKYLVLDEADEMLNMGFLDQVDTILKQLPKQRTTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++ ++S+ ++Q+PK++E+ T ++ IEH ++ + K A+L+ + + Sbjct: 183 FSATFPQDIHQLSDRYMQSPKQVEITTKATEIAEIEHSYIKVTDK--TKFAVLKDVTVVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + +IFC K++V + L + V IHG ++Q R+ ++ F+ G + +VA+ Sbjct: 241 NP-DRCMIFCRTKEHVDFVAQGLASMDYPVEKIHGGMEQDERLAVMKAFRAGEFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV +D+P E+Y+HR GRTGRAG GKA +LV + D++ + +E+ Sbjct: 300 DVAARGIDIENITHVIQYDMPVEKESYVHRTGRTGRAGALGKAISLVTESDMRRLREVEQ 359 >gi|255564033|ref|XP_002523015.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 956 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 135/342 (39%), Positives = 205/342 (59%), Gaps = 2/342 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G P+++ + DAG++ PTPIQ +T P+ L+ D+ IA+TG+GKT +++P + Sbjct: 490 FEASGFPPEILNDIRDAGFLAPTPIQAQTWPIALRNRDIVAIAKTGSGKTLGYLIPAFIL 549 Query: 63 LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R + P L+L PTRELA Q+ D K+G++ ++ L GG P Q K+L R Sbjct: 550 LRQCRNNPQNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKGPQLKELTR 609 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GAD+++ TPGR+ D K+ + +LV+DEADRMLDMGF P I+ I + +P RQTL Sbjct: 610 GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTL 669 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +++AT E++K++ + L NP ++ + + A +K + L Q+L++ Sbjct: 670 MYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKESRLGQILRA 729 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q+ IIFC+ K+ L S+ Q F AIHG+ Q R +L+ F+ G ++VA Sbjct: 730 QERGSKVIIFCSTKRLCDQLARSIGHQ-FGAAAIHGDKSQGERDWVLNQFRSGKSPILVA 788 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 +D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G Sbjct: 789 TDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATG 830 >gi|189464961|ref|ZP_03013746.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM 17393] gi|189437235|gb|EDV06220.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM 17393] Length = 659 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 226/368 (61%), Gaps = 8/368 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60 +F +LGLSP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 3 NFEELGLSPEIRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 +K + R+P++LIL PTREL Q+A + Y K L V + GG ++Q + L Sbjct: 63 ---QKINVKNRIPQSLILCPTRELCLQIAGDLNDYSKYITGLRVLPVYGGSSIDSQIRAL 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G +++ TPGR+LD R + + I+ +V+DEAD ML+MGF I I + VP R Sbjct: 120 KQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM+ E+ ++S+ +L++ K I + + + ++H +A+ K A L++++ Sbjct: 180 TLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAK--DKYAALKRIV 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + GIIFC +K + L + G++ ++HG + Q R ++ F+ +Q++ Sbjct: 238 DYYPQIY-GIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDAVMQKFRIRNLQIL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356 Query: 360 IEKLIEKK 367 IE++I KK Sbjct: 357 IERIISKK 364 >gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM 4252] Length = 505 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 138/347 (39%), Positives = 210/347 (60%), Gaps = 10/347 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + P+Q +T+P +L+ DV +QTG+GKT +F+LP+ L+ R +V+ LIL Sbjct: 57 GWTELMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLLPLFERLDPSRGQVQ---ALILT 113 Query: 80 PTRELAAQVADNFEKYGKNYN----LTVALLIGGIPFEAQNKKLERGADVLICTPGRILD 135 PTRELA Q+++ FE+ + L L+ GG+ + Q K LE+GA V+I TPGRILD Sbjct: 114 PTRELARQISEAFEQMKTGVSGAQSLRAVLVYGGVRYGPQLKALEQGAQVVIGTPGRILD 173 Query: 136 HFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVS 195 RG L + +++LV DEAD ML MGF P ++ + +P R T +FSATM +Q ++ Sbjct: 174 LIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKRYLPRERNTAMFSATMPPRVQALA 233 Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255 FL++P + ++T AETIEH + K AL+Q L + ++ IIF N K Sbjct: 234 REFLKDPAFVSLSTDRIAAETIEHRYFIV-PPMEKDRALVQ--LIELENPESAIIFANTK 290 Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315 ++V L L+ G++ AI G++ Q+ R +I+ ++G ++L+VA+D+AARG+DI D+ Sbjct: 291 RDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVAARGIDISDLS 350 Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 HVF +DVP E Y+HR GRTGR G+ G LV + + AI + Sbjct: 351 HVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIAR 397 >gi|167908511|ref|ZP_02495716.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei NCTC 13177] Length = 435 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 213/371 (57%), Gaps = 16/371 (4%) Query: 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84 TPIQ ++P+ L HD+ A+TG+GKTA+F L +L L+ R V+ L+L PTREL Sbjct: 2 TPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARRFDVQ---ALVLCPTREL 58 Query: 85 AAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143 A QVA + + N+ V L GG P Q + LE GA +++ TPGRI+DH +RG L Sbjct: 59 ADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPGRIMDHLDRGHLT 118 Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203 ++ + LV+DEADRMLDMGF I + P TRQTLLFSAT D + K+S+ FL++PK Sbjct: 119 LDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFLRHPK 178 Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263 R+++ ++ + + T + LL + T I FCN K+ +L Sbjct: 179 RVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVST----IAFCNTKQQCRDLLD 234 Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323 L QGF A+HG ++QR R ++L F + ++VA+D+AARGLDI + V N DV Sbjct: 235 VLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDVT 294 Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW-------LNGDLS 376 E Y+HRIGRTGRA + G A +L + ++ + IE+ + ++V+W GD + Sbjct: 295 PDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLAELKAGGD-A 353 Query: 377 SLNPPLEKIDI 387 L P +E + I Sbjct: 354 PLLPSMETLQI 364 >gi|326201867|ref|ZP_08191737.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] gi|325987662|gb|EGD48488.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] Length = 481 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 224/369 (60%), Gaps = 12/369 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS +++ A+ + PT +Q K IP V+++ D+ +QTG+GKTA+F +P+ + Sbjct: 5 FIDYKLSNEILKAISMLNFKSPTKVQEKVIPAVIEKKDIIVKSQTGSGKTAAFAVPICEL 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ L+L PTRELA QV ++ G+ L V+ + G PF Q K+L++ Sbjct: 65 VEWDENK---PQALVLTPTRELAIQVKEDIFNIGRFKRLKVSAIYGKSPFYNQEKELKQK 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGRI+DH R +NI+ LVIDEAD ML MGFI I+ I S + R T+L Sbjct: 122 THVVVGTPGRIIDHIERNTFDTSNIKYLVIDEADEMLHMGFIEQIETIVSSLSKERVTVL 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SATM +++ + +++ P R+E+ ++T + + +Y + A +LL+ Sbjct: 182 LSATMPIDIETLCNKYMKEPIRVEIEEQNTTTDRVHQ------ERYDVERASKIKLLRDI 235 Query: 243 DTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++N IIFCN K+ V ++ L +S IHG +DQR R+K++++FK G + + Sbjct: 236 TIVENPDSCIIFCNTKQKVDDVYDRLLLFKYSCEKIHGGMDQRDRLKVMNDFKRGYFRYL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DI ++ V N+D+P E Y+HRIGRTGR GR GKA + V +++ K+++ Sbjct: 296 IATDVAARGIDIDNISLVINYDIPQDGETYVHRIGRTGRIGRDGKAISFVTEDESKYLND 355 Query: 360 IEKLIEKKV 368 I + I K++ Sbjct: 356 INQYIGKEI 364 >gi|218676922|ref|YP_002395741.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus LGP32] gi|218325190|emb|CAV27104.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 468 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 222/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ + L P+++ + GY + TPIQ ++P +L DV G +TG+GKTA+F L +L Sbjct: 15 FSSIALKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQN 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 75 LRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 131 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH R ++ ++ + LV+DEADRML+MGF + + P RQTL Sbjct: 132 GAHILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTL 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++ V++ + NP+ ++V + + +I+ F ++ AL LL Sbjct: 192 LFSATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHH 250 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L F TI ++VA Sbjct: 251 QP--ESAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G A + +++++ + I+ Sbjct: 309 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQID 368 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 369 EYMDMPIE 376 >gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314] gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314] Length = 424 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 217/383 (56%), Gaps = 15/383 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPT-PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ ++ A LDA ++ T IQ T+P+ L HD+ G A+TG GKT F +P+L Sbjct: 10 FTELGVAAEITDA-LDALGIRHTFAIQEYTLPIALDGHDLIGQARTGMGKTYGFGVPLLD 68 Query: 62 -ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + + PR L++ PTRELA QV ++ E+ N L V GG P+E Q Sbjct: 69 RVFDSADIEEIDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYGGTPYEEQIDA 128 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G DV++ TPGR+LD + RG L ++ + ILV+DEAD MLD+GF+P I+ I + Sbjct: 129 LETGVDVVVGTPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIEKIMRALTHKH 188 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATM + ++ +FL P I + S A + A K A+ ++ Sbjct: 189 QTMLFSATMPGPILTLARSFLDKPVHIRAESADSAATHATTRQIVFQAHRMDKEAVTARI 248 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ++ K IIF K+ + L +GF+V ++HG++ Q +R + L+ F+ G I + Sbjct: 249 LQARGRGKT-IIFARTKRTAAQVAEDLAARGFTVGSVHGDMGQPARERSLNAFRSGKIDI 307 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV HV N+ P+ Y+HRIGRTGRAG G A TLV +++ Sbjct: 308 LVATDVAARGIDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYDELLKWT 367 Query: 359 AIEKLIEKKVDWLNGDLSSLNPP 381 AI +E L NPP Sbjct: 368 AINNELE---------LGQPNPP 381 >gi|293610799|ref|ZP_06693099.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827143|gb|EFF85508.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 639 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 227/377 (60%), Gaps = 15/377 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 28 FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 87 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 88 LAGQETFVPFKERMKA-VTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 146 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ +E L++DEADRMLD+GF ++ I+ Sbjct: 147 FGKQIQQL-KGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAIS 205 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L RQTL+FSAT D + +++E + P+RI + T ST I T KK Sbjct: 206 DLAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 265 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L L + +T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 266 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 323 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 324 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 383 Query: 352 EDIKHIDAIEKLIEKKV 368 + I A+E ++ ++ Sbjct: 384 RERGKIRALEDYLDARL 400 >gi|260777558|ref|ZP_05886451.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC BAA-450] gi|260605571|gb|EEX31856.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC BAA-450] Length = 458 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 144/364 (39%), Positives = 220/364 (60%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L +++ + Y + TPIQ + +P+VL+ DV G +TG+GKTA+F L +L+ Sbjct: 5 FKSLNLRSELIETLNSLNYTEMTPIQQQALPIVLEGKDVIGQGKTGSGKTAAFTLGLLSN 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ TL+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 65 LSVKRFRVQ---TLVLCPTRELADQVAKEVRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ + + LV+DEADRML+MGF I I P RQTL Sbjct: 122 GAHILVGTPGRILDHLSKGRINLAEMNTLVLDEADRMLEMGFEEAIDAIIDEAPQDRQTL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++ ++ +++P+ I+V + T TIE F A + AL LL Sbjct: 182 LFSATFPKNIESLASKVMRDPQMIKVESTHQTT-TIEQRFYKLNATEERDDALEALLLTH 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN KK V + L +GFSV IHG+++QR R + L+ F ++ ++VA Sbjct: 241 KP--ESSVVFCNTKKEVQKVTDELSHRGFSVVEIHGDMEQREREQALTMFANKSVSILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ ++++ + I+ Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARID 358 Query: 362 KLIE 365 + ++ Sbjct: 359 EYMD 362 >gi|331224537|ref|XP_003324940.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309303930|gb|EFP80521.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 521 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 152/416 (36%), Positives = 237/416 (56%), Gaps = 16/416 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL P++ A Y +PTPIQ ++IP L+ D+ G+AQTG+GKTA+F LP+L Sbjct: 77 FEELGLIPELCEACRTLNYKRPTPIQAESIPYALEDRDIIGLAQTGSGKTAAFALPVLQS 136 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L P+ +L PTRELA Q++ F+ G + A+++GGI +Q L Sbjct: 137 LWND------PKPFFCCVLAPTRELAYQISQQFDALGSTIGVKTAVIVGGIDMMSQAIAL 190 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+ DH K + N++ L++DEADR+LDM F P I I ++P R Sbjct: 191 SKRPHIIVATPGRLHDHLENTKGFSLRNLKYLIMDEADRLLDMDFGPVIDKILKVIPRER 250 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +T LFSATMT ++ K+ L +P +++++T T + + ++ + + K A L L Sbjct: 251 RTYLFSATMTTKVAKLQRASLVSPVKVQMSTKYDTVDGLVQLYM--FFPFKNKDAYLVYL 308 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ + K+ IIF + L L GF +HG + Q +R+ L+ FK G + Sbjct: 309 V-NELSGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLNQFKSGNRSI 367 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA TLV + D++ + Sbjct: 368 LVATDVASRGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQYDVELLQ 427 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK---NNPIPQKSTGFDRRKK 411 IE +I KK++ D + E++ A R+ N K +G RRK+ Sbjct: 428 RIEGVIGKKMEEFPHDKEQVFLLSERVGEASREATREIRDNERNGGKKSGKFRRKR 483 >gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57] Length = 492 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ K++ Sbjct: 375 EIDSKIELF 383 >gi|255561546|ref|XP_002521783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223538996|gb|EEF40593.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 714 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-- 65 L+P+++ AV AGY KP+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPMLT + + Sbjct: 301 LTPELLKAVERAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 360 Query: 66 ---GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 P +++ PTRELA Q+ D K+ + V ++GG E Q ++ +G Sbjct: 361 PMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 420 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +V+I TPGR+LD R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 421 CEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE 480 Query: 178 ------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225 R T +FSATM +++++ +L+NP + + T + I + Sbjct: 481 NEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVNIGTAGKATDLISQHVIMV- 539 Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 + S+K LQ+LL K I+F N KKN + +L+K + V +HG Q R Sbjct: 540 -KESEKFFKLQRLLDEAGD-KTAIVFVNTKKNADTVAKNLDKAKYRVTTLHGGKSQEQRE 597 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 L F+ ++VA+D+A RG+DIPDV HV N+D+P E Y HRIGRTGRAG+ G A Sbjct: 598 ISLEGFRTKKYTVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKSGVA 657 Query: 346 FTLVAKED 353 T + D Sbjct: 658 TTFLTLHD 665 >gi|150009493|ref|YP_001304236.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503] gi|256838225|ref|ZP_05543735.1| ATP-dependent RNA helicase [Parabacteroides sp. D13] gi|149937917|gb|ABR44614.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503] gi|256739144|gb|EEU52468.1| ATP-dependent RNA helicase [Parabacteroides sp. D13] Length = 610 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 220/369 (59%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ ++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA++ LP Sbjct: 4 FEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 IL+K P+ LIL PTREL Q+AD+ Y K NL V + GG E+Q K L+ Sbjct: 61 ILQKINVSQYQPQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++D NR + ++N++ +++DEAD ML+MGF I I + +P R Sbjct: 121 RGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNM 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+ +++ ++++PK I + + + I + AQ K L++L Sbjct: 181 LLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQ--DKYLALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L + G++ ++HG + Q R ++ F+ IQL+V Sbjct: 239 YYPNI-YGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G A ++ + I I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREI 357 Query: 361 EKLIEKKVD 369 E++I KK D Sbjct: 358 ERIINKKFD 366 >gi|331011364|gb|EGH91420.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 442 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 217/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGL ++ A+ GY PTP+Q + IP VL D+ AQTGTGKTA F LP+L Sbjct: 1 MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +E + R L+L PTRELA QV ++ +Y ++ L+ GG+ Q K Sbjct: 61 QRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVL+ TPGR+LD + + + ++ L++DEADRMLD+GF ++ I +++P R Sbjct: 121 LRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +DE++ ++ L +P I V+ + A +++ V +K L L Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIGVSPRNVAASSVKQWVVTV--DKKRKADLFIHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++F + V L L+ G + IHG+ Q +R + L FK +++ Sbjct: 239 MKKH-RWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N D+P AE+YIHRIGRTGRAG G+A +LV ++++ + Sbjct: 298 LVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLS 357 Query: 359 AIEKLIEKKVD 369 AIE L + ++ Sbjct: 358 AIEVLTRQTLE 368 >gi|296161858|ref|ZP_06844659.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] gi|295887877|gb|EFG67694.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] Length = 467 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 146/392 (37%), Positives = 219/392 (55%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P + + GYV+ TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 11 FSQLSLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R + ++L PTRELA QV + + N+ V L GG P Q LE Sbjct: 71 LD---VRNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ FL+NPK +++ + + + T + LL + Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 248 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + ++ + ++E Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMSEMGRVGSLE 363 Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387 + ++ V+W +L++ L PP+E + I Sbjct: 364 QAQKRDVEWHKLSELTATSNERLLPPMETLQI 395 >gi|73996626|ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 10 [Canis familiaris] Length = 812 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 152/418 (36%), Positives = 230/418 (55%), Gaps = 43/418 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L T Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLLT 452 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++E+ + P +IL PTRELA Q+ + K+GK + +IGGI E Q +L Sbjct: 453 LIEES---DQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 509 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT---- 177 G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P + Sbjct: 510 GCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKP 569 Query: 178 ----------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE 215 RQT++F+ATM +++++ ++L+ P + + + E Sbjct: 570 DTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHE 629 Query: 216 TIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273 +E F+ + ++ KK A+L+Q IIF NQKK L SLEK G++ C Sbjct: 630 RVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKMGYNAC 684 Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333 +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+YIHRI Sbjct: 685 TLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRI 744 Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391 GRTGRAG+ G A T + KED +++ I L +SS P L AQH Sbjct: 745 GRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHK 796 >gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium dendrobatidis JAM81] Length = 445 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 140/363 (38%), Positives = 219/363 (60%), Gaps = 7/363 (1%) Query: 7 GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66 G+ P+++ A G+ KP+ IQ +IP+ L D+ G+AQTG+GKTA+F LP+L L Sbjct: 17 GIIPELIEACTTLGFKKPSDIQCASIPVALTGRDIIGLAQTGSGKTAAFALPILQTL--- 73 Query: 67 RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 A + ++ PTRELA Q+++ FE G + A+++GG+ +Q+ L + V+ Sbjct: 74 FANPQHLYACVIAPTRELAFQISEQFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPHVI 133 Query: 127 ICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 ICTPGR++DH K + +++ LV+DEADR+LD+ F I+ + ++P R T LFSA Sbjct: 134 ICTPGRLVDHLENTKGFNLKHLKYLVMDEADRLLDLDFGAEIEKVLKVIPRERNTYLFSA 193 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245 TMT +++K+ L NP ++EV T ST +T+ + T+ Y +K L LL ++ + Sbjct: 194 TMTSKVEKLQRASLVNPVKVEVATKYSTVDTLLQYY--TFFPYKQKECYLTYLL-NELSG 250 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 + I+F + L L GF +HG + Q R+ L+ FK G +++A+D+A Sbjct: 251 QTCIVFTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILIATDVA 310 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 +RGLDIP V V N+DVP +++YIHR+GRT RAGR GK+ TLV + D++ IE I+ Sbjct: 311 SRGLDIPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQYDVEWYQRIEHAIQ 370 Query: 366 KKV 368 KK+ Sbjct: 371 KKL 373 >gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18] gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18] Length = 574 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 213/371 (57%), Gaps = 9/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+ + A+ G P PIQ T+P+ L D+ G A+TGTGKT F LP + Sbjct: 16 FADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQR 75 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G A + P + LIL PTRELA QV ++ K N VA L GG+P E Q Sbjct: 76 VVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQ 135 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L RG +V++ TPGRI+D + +G L + ++I+V+DEAD MLD+GF P ++ I S +P Sbjct: 136 AELLRRGLEVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLP 195 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCAL 234 RQ++LFSATM + ++ ++ P RI P ++T Y A + K + Sbjct: 196 EDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEM 255 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++L++ + +IF K++ + L +GF+ +HG+++Q +R + L F+ G Sbjct: 256 IGRILRATGRGRT-VIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTG 314 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N VP + Y+HR GRTGRAG G A TLV +D+ Sbjct: 315 KVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVDWDDL 374 Query: 355 KHIDAIEKLIE 365 I +E Sbjct: 375 PRWKVINDALE 385 >gi|86145730|ref|ZP_01064059.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222] gi|85836429|gb|EAQ54558.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222] Length = 459 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 222/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ + L P+++ + GY + TPIQ ++P +L DV G +TG+GKTA+F L +L Sbjct: 6 FSSIALKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 66 LRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH R ++ ++ + LV+DEADRML+MGF + + P RQTL Sbjct: 123 GAHILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++ V++ + NP+ ++V + + +I+ F ++ AL LL Sbjct: 183 LFSATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L F TI ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G A + +++++ + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDMPIE 367 >gi|332978229|gb|EGK14960.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)] Length = 383 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 233/376 (61%), Gaps = 15/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DL LS V+ +V + G+ + TPIQ K +P L D G AQTGTGKTA+F++ ++ Sbjct: 7 FDDLALSESVLKSVKELGFTRLTPIQAKILPHTLAGQDAIGQAQTGTGKTATFLITIIEA 66 Query: 62 ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L++ A M PR +IL PTRELA Q+ ++ ++ +L ++GG+ +E Q Sbjct: 67 LLKRPFAADEMRYLGEPRAVILAPTRELANQIFEDAIGLTQHTDLHSVCIMGGVDYEKQT 126 Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ D+LI TPGR++D ++G + ++ +E V+DEADRMLDMGFIP I+ + +P Sbjct: 127 AALDHAFTDILIATPGRLIDLIHKGHVFLDRVEAFVLDEADRMLDMGFIPDIKRLMRYMP 186 Query: 176 FT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKC 232 RQ+LLFSAT ++ ++ +L NP +E+ T++ +E H ++ T S K Sbjct: 187 ANTDRQSLLFSATFNQDVMNLAYQWLSNPVFVEIKPEHKTSDLVEQHFYLLTE---SDKF 243 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L ++L ++DT K I+F N+K V L + L + +V + G++DQ R + L NFK Sbjct: 244 KALNRILMAEDTHKV-IVFANRKDQVKRLYNRLSAE-HNVVMLSGDVDQSKRERYLDNFK 301 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G +++VA+D+A RG+ + D+ HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++ Sbjct: 302 NGDAKVLVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQQGVSISFVSED 361 Query: 353 DIKHIDAIEKLIEKKV 368 D ++ AIE ++ K+ Sbjct: 362 DAFNLPAIEAHLDTKL 377 >gi|120612881|ref|YP_972559.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax citrulli AAC00-1] gi|120591345|gb|ABM34785.1| ATP-dependent RNA helicase DbpA [Acidovorax citrulli AAC00-1] Length = 477 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 151/392 (38%), Positives = 221/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLSP+V+ + GY + TPIQ ++P L D+ A TG+GKTA+F L +L Sbjct: 19 FDALGLSPEVLANLRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLER 78 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L R V+ L+L PTRELA QVA + + N+ V L GG+P Q LE Sbjct: 79 LNPRRFAVQ---ALVLCPTRELADQVAAEIRRLARAQENIKVVTLCGGVPLRGQAASLEH 135 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG L + + V+DEADRMLDMGF I + P TRQTL Sbjct: 136 GAHVVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTL 195 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + +++++ F+++P+RI V + + + + Q ++ + QLL + Sbjct: 196 LFSATYPEGIERIARQFMKDPQRIVVQAQHAEGKIGQRWY---EVQERERLHAVSQLL-N 251 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ I FCN K+ +L L QGFS A+HG+++QR R ++L F + ++VA Sbjct: 252 HFRPESAIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVA 311 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI + V N DV E +IHRIGRTGRA G A +L + ++ + IE Sbjct: 312 TDVAARGIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLALSLASLPEMGQVGRIE 371 Query: 362 KLIEKKVDW--LNGDLSS----LNPPLEKIDI 387 L + +W L+G + L PP+ I I Sbjct: 372 VLQGRPSEWHPLSGLTPAPGGPLQPPMATIQI 403 >gi|255034351|ref|YP_003084972.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254947107|gb|ACT91807.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM 18053] Length = 411 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 233/370 (62%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D ++ ++ ++ AG+ KPT IQ K IP V++ DV IAQTGTGKTA+F +P++ Sbjct: 1 MKFDDYPIAAEIKRSLEAAGFKKPTDIQFKAIPAVMKGEDVLAIAQTGTGKTAAFAIPVI 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K ++ R + +++ PTRELA Q+A+ F + + + GG+ Q K Sbjct: 61 DKLHKQKSSSRSEGIKCVVMVPTRELAIQIAEVFSSISRYTKVKTFSVFGGVEQGPQIAK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE+G D+L+ TPGR+ D ++G + ++ ++ L++DEAD MLD+GFI IQ++ +P R Sbjct: 121 LEKGIDILVSTPGRMFDLVSQGHIRLDRVDTLILDEADHMLDLGFIKDIQDLIRHLPKRR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT+ ++++K++ + ++N RI+++ + A+ I+H VA A K+ L + + Sbjct: 181 QTLFFSATIDEKIKKLAYSLVRNAIRIQISPKNPVAKNIDHS-VAFVAMDDKRFFLERVI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q+ D K ++F K + ++LE+ IHG+ Q R+ ++ FK+G +++ Sbjct: 240 RQNAD--KKILVFVRTKVRAERVFNALERMEIKSLTIHGDKQQSDRLTAMNEFKKGNVKI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D++ARG+DIP+V +V N+D+P + E+Y+HR+GRTGR + G A + ++E+ +D Sbjct: 298 LIATDVSARGIDIPNVDYVINYDLPEQPESYVHRVGRTGRGMQKGIAVSFCSEEEKPLLD 357 Query: 359 AIEKLIEKKV 368 I++ ++K + Sbjct: 358 EIQQYLDKPI 367 >gi|187922064|ref|YP_001893706.1| ATP-dependent RNA helicase DbpA [Burkholderia phytofirmans PsJN] gi|187713258|gb|ACD14482.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans PsJN] Length = 467 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 220/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P + + GYV+ TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 11 FSQLPLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ AR + ++L PTRELA QV + + N+ V L GG P Q LE Sbjct: 71 LD---ARNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ FL+NPK +++ + + + T LL + Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDGRLHAVGLLLNHYRP 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 248 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + ++ + ++E Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLE 363 Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387 + +++V+W +L++ L PP+E + I Sbjct: 364 QAQKREVEWHKLSELTAASNERLLPPMETLQI 395 >gi|332520631|ref|ZP_08397093.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043984|gb|EGI80179.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 451 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 145/370 (39%), Positives = 214/370 (57%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ + A+ D GY PTPIQ + +V D+ GIAQTGTGKT +++LP+L Sbjct: 1 MTFRDLNLNTPLYNALDDLGYTTPTPIQAEAFNVVASGKDMVGIAQTGTGKTFAYMLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + PR L+L PTREL QV + EK K N V + GG Q + + Sbjct: 61 RNLPFSKQE--NPRVLVLVPTRELVVQVVEEIEKLSKYINNRVLGVYGGTNINTQKQAIA 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+ D L + +I+ L+IDE D MLD+GF + NI L+P RQ Sbjct: 119 QGIDILVATPGRLYDLALSRVLQLKSIQKLIIDEVDVMLDLGFRHQLINIFDLLPTRRQN 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 ++FSATMT ++ + +F ++P+++ + T + E I+ Y+ K LL+ LLQ Sbjct: 179 IMFSATMTKDVDDLIVDFFKSPEKVSIATSGTPLENIKQTRYKAPNFYT-KLNLLKHLLQ 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++T +IF KK L +L E+ +C IH N Q R++ + F+EG +++ Sbjct: 238 DEETYNKVLIFVAYKKMADRLFEALDEEYNEELCVIHSNKTQNYRLRSIEQFREGINRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLDI +V HV NFD P ENY+HRIGRTGRA R G A +++ + I+ Sbjct: 298 VATDVMARGLDIDNVSHVINFDTPEYPENYMHRIGRTGRAEREGHALVFTTEKEQQAIED 357 Query: 360 IEKLIEKKVD 369 IE L++ ++ Sbjct: 358 IEALMDMTIN 367 >gi|224536831|ref|ZP_03677370.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus DSM 14838] gi|224521553|gb|EEF90658.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus DSM 14838] Length = 657 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 226/368 (61%), Gaps = 8/368 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPML 60 +F +LGLSP++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA+F LP++ Sbjct: 3 NFEELGLSPEIRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLI 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKL 119 +K + R+P++LIL PTREL Q+A + Y K L V + GG ++Q + L Sbjct: 63 ---QKINVKNRIPQSLILCPTRELCLQIAGDLNDYSKYITGLRVLPVYGGSSIDSQIRAL 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G +++ TPGR+LD R + + I+ +V+DEAD ML+MGF I I + VP R Sbjct: 120 KQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILADVPQERN 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM+ E+ ++S+ +L++ K I + + + ++H +A+ K A L++++ Sbjct: 180 TLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAK--DKYAALKRIV 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + GIIFC +K + L + G++ ++HG + Q R ++ F+ +Q++ Sbjct: 238 DYYPQI-YGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDTVMQKFRIRNLQIL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + Sbjct: 297 VATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRE 356 Query: 360 IEKLIEKK 367 IE++I KK Sbjct: 357 IERIISKK 364 >gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 515 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 210/363 (57%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F GL ++ A+ +AG+ +PIQ + IP+VL HDV A TGTGKTA+F LP L Sbjct: 11 LAFEQFGLKAPILQALQEAGFKIASPIQKQAIPVVLAGHDVVAQAHTGTGKTAAFGLPAL 70 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + L+L PTRELA+QV+D + G++ + A + GG F Q + L+ Sbjct: 71 HLIHDNPG----SQLLVLTPTRELASQVSDELFRLGRHLGIRTATICGGKSFRPQIEALQ 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR+ D L I+V+DEAD MLDMGF+ IQ I + +P RQT Sbjct: 127 RGVQVIVATPGRLQDLLESDSLPDFRPAIVVLDEADEMLDMGFLEAIQRIFTFLPAKRQT 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +QK++ L+ P I V +T + I+ + L +LL Sbjct: 187 LLFSATMPSAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAIL--RLLD 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ K+ IIFC KK+V L +L G+ +HG+++Q R +++ +F+ I+++V Sbjct: 245 SEEPAKS-IIFCRTKKDVDRLSTTLVANGYHARGLHGDMEQPQREEVIRHFRSEQIRVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGL + DV HVFN+ +P +Y+HRIGRTGRAG G A T V + + Sbjct: 304 ATDVAARGLSVSDVSHVFNYHLPFDPASYVHRIGRTGRAGNKGVASTFVTLREWREFQRY 363 Query: 361 EKL 363 EK+ Sbjct: 364 EKV 366 >gi|307331747|ref|ZP_07610851.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger Tu 4113] gi|306882613|gb|EFN13695.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger Tu 4113] Length = 1097 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 151/418 (36%), Positives = 233/418 (55%), Gaps = 30/418 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F +LG+ P+ A+ G + P PIQ T+P+ L DV G A+TGTGKT F LP+L Sbjct: 38 FRELGILPETAEALEAVGIMSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLER 97 Query: 61 ----TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 +E GRA+ P+ L++ PTREL QV ++ GK + V + GG + Sbjct: 98 VVVSADVEAGRAKPEQLTDAPQALVVVPTRELCQQVTNDLLTAGKVRAVRVLSIYGGRAY 157 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L++G DV++ TPGR+LD + KL +++++ LV+DEAD MLD+GF+P ++ I Sbjct: 158 EPQVEALKKGVDVVVGTPGRLLDLAGQKKLRLSSVKSLVLDEADEMLDLGFLPDVEKIIQ 217 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI----EHCFVATYAQY 228 L+P RQT+LFSATM ++ ++ ++ P I P T+ +H F A Sbjct: 218 LLPAKRQTMLFSATMPGQVISLARRYMSQPTHIRATAPDDEGATVANITQHVF---RAHS 274 Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 K ++ ++LQ+ D +IFC K+ ++ L ++GF+ A+HG++ Q +R + L Sbjct: 275 MDKPEVVARVLQA-DGRGLVMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQAL 333 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 F+ G + ++V +D+AARG+D+ V HV N+ P + Y+HRIGRTGRAG G A TL Sbjct: 334 RAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGIAITL 393 Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGF 406 V +DI +LI K +D + + P E ++H N IP +TG Sbjct: 394 VDWDDIPRW----QLINKALDL------AFHEPEETYSTSEHLFELLN--IPAGTTGV 439 >gi|163789144|ref|ZP_02183587.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium ALC-1] gi|159875557|gb|EDP69618.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium ALC-1] Length = 638 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 224/369 (60%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F +LGL+ ++ A+ D G+ KP+ +Q K IPL+L+ D+ +AQTGTGKTA+F PML Sbjct: 4 FQELGLNEDLLNAITDLGFEKPSEVQEKAIPLLLEEDKDLVALAQTGTGKTAAFGFPMLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120 ++ R + LIL PTREL Q+ + ++YGK L V + GG Q + ++ Sbjct: 64 KID---IDSRTTQGLILSPTRELCLQITNELKQYGKYCKGLNVTAIYGGASITDQARSVK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D +R + ++ I+ V+DEAD ML+MGF I +I S P + T Sbjct: 121 RGAQIIVATPGRMKDMISRKLVDISKIQYSVLDEADEMLNMGFYEDITDILSHTPDDKST 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++ F+ +P I V + + + H + A+ + L++L Sbjct: 181 WLFSATMPKEVSTIAKKFMYDPTEITVGNRNESTNNVSHEYYLVNAR--DRYQALKRLSD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + +IFC K++ + +L + G+S A+HG++ Q R ++ +F+ IQ++V Sbjct: 239 ANPDIFS-VIFCRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDIVMKSFRNKQIQMLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P+ E Y HR GRTGRAG+ G + +V+K + + I +I Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVSKSETRKIKSI 357 Query: 361 EKLIEKKVD 369 E++I+K+ + Sbjct: 358 ERIIKKQFE 366 >gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 621 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 150/419 (35%), Positives = 234/419 (55%), Gaps = 32/419 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA+LG+ P++V A+ + G + IQ T+PL L D+ G A+TGTGKT F +P+L Sbjct: 99 FAELGVRPEIVSALAEVGIERTFAIQELTLPLALAGEDLIGQARTGTGKTLGFGVPLLQR 158 Query: 61 --------TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109 +G A R +P+ L++ PTREL QVA + G++ + V + GG Sbjct: 159 IVPPAERPAATAEGEAADRTKDVPQALVVVPTRELCVQVAQDLTDAGRDLGIRVTAIYGG 218 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 +E Q L +G DV++ TPGR+LD + L + + +LV+DEAD MLD+GF+P ++ Sbjct: 219 RAYEPQLNALRKGVDVVVGTPGRLLDLAEQRHLALGRVGVLVLDEADEMLDLGFLPDVER 278 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYA 226 I ++P RQT+LFSATM + +S FL P I E + S T +H + A Sbjct: 279 ILRMLPEERQTMLFSATMPGPIIALSRAFLNRPTHIRAEESDQGSIHERTKQHVY---RA 335 Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 K LL ++LQ++D +IF K+ V + L ++GF+ A+HG++ Q +R + Sbjct: 336 HAMDKVELLTRVLQAKDRGLT-MIFARTKRTVQRVADDLAERGFAAAAVHGDLGQGAREQ 394 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L F+ G + ++VA+D+AARG+D+ DV HV N+ P A+ Y+HRIGRTGRAG+ G A Sbjct: 395 ALRAFRSGKVDVLVATDVAARGIDVTDVTHVINYQCPEDAKTYVHRIGRTGRAGKEGVAV 454 Query: 347 TLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 TLV +++ KL+ ++ ++ P+E + H + + IP +TG Sbjct: 455 TLVDWDEMPRW----KLVSDELGL------GIDEPVETYSTSDHLYTDLD--IPTDATG 501 >gi|225443496|ref|XP_002270644.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 709 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 206/373 (55%), Gaps = 25/373 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + LSP+++ AV AGY P+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPMLT Sbjct: 291 WVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 350 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ D K+ + V ++GG E Q Sbjct: 351 ISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGF 410 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 ++ +G +V+I TPGR++D R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 411 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 470 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T + I Sbjct: 471 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQH 530 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + S+K LQ+LL K I+F N KK+ L L+K G+ V +HG Sbjct: 531 VIMVKG--SEKMPKLQKLLDELGD-KTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKS 587 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+A RG+DIPDV HV N+D+P E Y HRIGRTGRAG Sbjct: 588 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 647 Query: 341 RHGKAFTLVAKED 353 + G A T + D Sbjct: 648 KTGVATTFLTLHD 660 >gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470] gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470] gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464] Length = 492 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ K++ Sbjct: 375 EIDSKIELF 383 >gi|327405768|ref|YP_004346606.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321276|gb|AEA45768.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM 16823] Length = 685 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 137/366 (37%), Positives = 218/366 (59%), Gaps = 8/366 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 M F +LGL +V+ ++ G+ +PTPIQ IP +LQ D G+AQTGTGKTA+F LP+ Sbjct: 1 MTFKELGLRVEVLQSIEALGFAEPTPIQQSAIPHLLQLESDFVGLAQTGTGKTAAFGLPL 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKK 118 + K R + L++ PTREL Q++ + E + K + + V + GG Q Sbjct: 61 I---HKVTDRPTETQGLVIAPTRELCLQISKDLEAFAKFDQQIKVVAVYGGTDIRKQITD 117 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++RGA V++ TPGR++D NR + + +E +V+DEAD ML+MGF I I S P T+ Sbjct: 118 IKRGATVVVATPGRLVDLINRKAINLKTVETVVLDEADEMLNMGFKEDIDAILSATPDTK 177 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSATM E+ +++N++ +P + + + + E IEH + T + + AL + + Sbjct: 178 SVWLFSATMPKEVAAIAKNYMTDPLEVAMGHKNQSNENIEHIYY-TVKERDRYDALKRLI 236 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 S D G++FC + + L K+G+S +HG++ Q R +++ F+E +IQL Sbjct: 237 DASPDIF--GLVFCRTRNETATVAEKLAKEGYSAEPLHGDLSQAMRDRVMDRFRERSIQL 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ ++ HV N+++P+ ENY HR GRT RAG+ GK+ L+ + I Sbjct: 295 LVATDVAARGIDVDNITHVINYNLPDDIENYTHRSGRTARAGKQGKSLVLINTRENFKIK 354 Query: 359 AIEKLI 364 AIE+ I Sbjct: 355 AIERQI 360 >gi|260770944|ref|ZP_05879873.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972] gi|260614181|gb|EEX39371.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972] Length = 460 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 6 FAALNLKPELLSNLDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LHVKRFRVQ---SLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ ++ + LV+DEADRML+MGF + I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + +Q+++++ ++ I+V + T+ +I F ++ AL LL Sbjct: 183 LFSATYPEAIQEIAQSVTRDALMIKVASTHETS-SIRQQFYKVEGTEARDEALATLLLNH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN K+ V ++ L +GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QP--ESAVVFCNTKREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G A + + +++ I IE Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQIE 359 Query: 362 KLIE 365 + ++ Sbjct: 360 EYMD 363 >gi|210614158|ref|ZP_03290078.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787] gi|210150802|gb|EEA81810.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787] Length = 530 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/371 (38%), Positives = 226/371 (60%), Gaps = 11/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +LGL ++ AV G+ + +PIQ K IP++L+ D+ G AQTGTGKTA+F +P+L Sbjct: 4 MNFENLGLCSEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLL 63 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 ++ +++ ++L PTRELA QVAD N KY + + V + GG Q + Sbjct: 64 QKVDPKNKKLQ---GIVLCPTRELAIQVADEIRNLAKY--MHGIKVLPIYGGQEIVKQIR 118 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ G ++I TPGR++DH R + M+ + +V+DEAD ML+MGF I+ I S VP Sbjct: 119 SLKSGTQIIIGTPGRVMDHMRRKTIKMDQVHTVVLDEADEMLNMGFREDIETILSGVPEE 178 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSATM + ++++ F +N + ++V T IE + + K +L + Sbjct: 179 RQTVLFSATMPKAIMEITKKFQKNAQMVKVTKKELTVPNIEQFYYEVRPK--NKEEVLTR 236 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL T K +IFCN KK V L +L +G+ +HG++ Q R +++ F+ G Sbjct: 237 LLDIY-TPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTD 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ +V VFN+D+P E Y+HRIGRTGRAGR G++F+ V+ +++ + Sbjct: 296 ILVATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKL 355 Query: 358 DAIEKLIEKKV 368 I++ + K+ Sbjct: 356 KEIQRYCKTKI 366 >gi|212275354|ref|NP_001130628.1| hypothetical protein LOC100191727 [Zea mays] gi|194689682|gb|ACF78925.1| unknown [Zea mays] Length = 614 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 154/405 (38%), Positives = 233/405 (57%), Gaps = 34/405 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ V+ V GY PTP+Q +P+V+ D+ AQTG+GKTA+F LP+++ Sbjct: 82 FEAAGLAEAVLRNVARCGYESPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSG 141 Query: 63 L-------------EKGR-ARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107 L ++G RV PR L+L PTRELAAQ+ + +K+ L V + Sbjct: 142 LVAPAGGGNGHGPRDRGSFDRVAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAY 201 Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167 GG P +Q + LE+G D+L+ TPGR++D R ++ + I+ LV+DEADRML+MGF P I Sbjct: 202 GGTPMFSQLRDLEKGVDLLVATPGRLVDLVERSRISLEAIKYLVMDEADRMLNMGFEPQI 261 Query: 168 QNITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223 + I ++ RQT+LFSAT E+Q+++ +FL N + V S+ + I+ Sbjct: 262 RKIVDMMNMPKKSVRQTMLFSATFPPEIQRLATDFLHNYIFVTVGRVGSSTDLIDQKI-- 319 Query: 224 TYAQYSKKCALLQQLLQSQDT--MKN----GIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 + +K L +LQ Q KN ++F K+ +L + L+ GFS +IHG Sbjct: 320 EFVNGGEKRGFLLDILQKQSVGLSKNKQPLTLVFVETKREADSLQYCLQSNGFSATSIHG 379 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 + Q+ R + L +FK G ++VA+D+A+RGLD+P+V HV N+D+P ++Y+HRIGRTG Sbjct: 380 DRTQQERERALKSFKSGATPILVATDVASRGLDVPNVAHVINYDLPKSIDDYVHRIGRTG 439 Query: 338 RAGRHGKAFTLVAKEDIKHI--DAIEKLIEKKVD---WLNGDLSS 377 RAG+ GKA L + + H+ D +E + K D WL GD +S Sbjct: 440 RAGKAGKATALFTESN-HHLAKDLLELMTGAKQDVPEWL-GDYAS 482 >gi|262383201|ref|ZP_06076338.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B] gi|298373901|ref|ZP_06983859.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_19] gi|262296079|gb|EEY84010.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B] gi|298268269|gb|EFI09924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_19] Length = 609 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 220/369 (59%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ ++ A+ + GY P P+Q + IP +L + +DV +AQTGTGKTA++ LP Sbjct: 4 FEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 IL+K P+ LIL PTREL Q+AD+ Y K NL V + GG E+Q K L+ Sbjct: 61 ILQKINVSQYQPQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++D NR + ++N++ +++DEAD ML+MGF I I + +P R Sbjct: 121 RGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNM 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+ +++ ++++PK I + + + I + AQ K L++L Sbjct: 181 LLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQ--DKYLALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L + G++ ++HG + Q R ++ F+ IQL+V Sbjct: 239 YYPNIY-GIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G A ++ + I I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREI 357 Query: 361 EKLIEKKVD 369 E++I KK D Sbjct: 358 ERIINKKFD 366 >gi|39644716|gb|AAH09379.2| DDX47 protein [Homo sapiens] Length = 450 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 21 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 79 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 80 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 136 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 137 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 197 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 254 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 313 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 314 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 373 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 374 EHLIGKKL 381 >gi|332856302|ref|ZP_08436187.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150] gi|332727108|gb|EGJ58577.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150] Length = 475 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 65 LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + P+RI + T ST I T KK Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L L + +T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 243 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E +E +++ Sbjct: 361 RERGKIRALEDYLEARLN 378 >gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. SG-1] gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. SG-1] Length = 496 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 218/364 (59%), Gaps = 11/364 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LG+S V+ + PTPIQ K IP V++ DV AQTGTGKT +F+LP++ Sbjct: 3 NFKSLGISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPIIE 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 + + ++ LI+ PTRELA Q+ + K ++ ++V + GG E Q KL Sbjct: 63 NFDFNQQSIQ---ALIVTPTRELALQITEEVRKLIRHIEGISVLPVYGGQDVEKQLNKLR 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGRILDH RG + ++ + LV+DEAD+ML +GF+ ++ I P TRQT Sbjct: 120 KNVGIVVGTPGRILDHIGRGTIDLSELNSLVLDEADQMLHIGFLKEVEMIIRETPKTRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQL 238 LLFSAT+ DE++ +++ +++P+ I V A+++E FV A K+ L++ + Sbjct: 180 LLFSATIPDEIKTLAKKHMKSPEYISVERKQGPAKSVEQKAVFVNDRA---KQATLIEMI 236 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + +IFC K+ V L +L +GF +HG++ Q R K++ F++ QL Sbjct: 237 KEYRPYL--AVIFCRTKRRVTKLYEALASEGFMCDELHGDLSQAKREKVMKRFRDAEFQL 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARGLD+ + HVFN+D+P A++Y+HRIGRTGRAG G A T + + + Sbjct: 295 LIATDVAARGLDVEGITHVFNYDIPEDADSYVHRIGRTGRAGEKGLAVTFYSPQQKDQLA 354 Query: 359 AIEK 362 IEK Sbjct: 355 EIEK 358 >gi|108763762|ref|YP_633382.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622] gi|108467642|gb|ABF92827.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622] Length = 423 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 216/371 (58%), Gaps = 17/371 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLS + AV GY +PTP+Q TIP+VL+ DV A+TG+GKTA+F+LP Sbjct: 1 MTFASLGLSDALTRAVAGLGYDEPTPVQRATIPVVLRGGDVWASAKTGSGKTAAFLLP-- 58 Query: 61 TILEKGRAR----VRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEA 114 ILE RAR VR R IL PTRELAAQ+ D+ ++YG++ L L +GG+ Sbjct: 59 -ILEALRARPGGSVRPVRAFILVPTRELAAQIVDSIQRYGQHLKKPLKTCLAVGGVSANP 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L GAD+++ TPGR LD ++ L ++ +E LV+DEADR+ +GF + ++ +L+ Sbjct: 118 QMLALRGGADIVVATPGRALDLVHQNALRLDQVETLVLDEADRLFSLGFADELNSLLALL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV---ATYAQYSKK 231 P RQ LLFSAT ++K +E L P RI+V+ E F+ A ++ Sbjct: 178 PTRRQNLLFSATFPPAVRKFAEQLLHEPTRIDVD----DGELPSTEFILQRALQVDVPRR 233 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL+ LL++ + + F + ++ L + G ++HG + Q +R + L++F Sbjct: 234 TMLLRHLLETH-AWSHVLTFVASRYTADHVALKLNRAGIVATSLHGELSQGARTRALADF 292 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K ++++VA+D+AARGLDI + V N+D+P +Y+HRIGRTGRAG G A + V+ Sbjct: 293 KAKRVRVLVATDVAARGLDIAQLPAVVNYDLPRSTADYVHRIGRTGRAGDKGVAISFVSA 352 Query: 352 EDIKHIDAIEK 362 H IEK Sbjct: 353 GTEAHFRLIEK 363 >gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens] gi|52782792|sp|Q9H0S4|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName: Full=DEAD box protein 47 gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens] gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens] gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct] gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens] gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens] gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens] Length = 455 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 379 EHLIGKKL 386 >gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4] gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4] Length = 492 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + ++T I F ++ + LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNTTNTDITQRFYVINEH--ERAEAIMHLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|315178988|gb|ADT85902.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii NCTC 11218] Length = 460 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 224/364 (61%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 6 FAALNLKPELLSNLDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LHVKRFRVQ---SLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++G++ ++ + LV+DEADRML+MGF + I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + +Q+++++ ++ I+V + T+ +I F ++ AL LL Sbjct: 183 LFSATYPEAIQEIAQSVTRDALMIKVASTHETS-SIRQQFYKVEGTEARDEALATLLLNH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN K+ V ++ L +GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QP--ESAVVFCNTKREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G A + + +++ I IE Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQIE 359 Query: 362 KLIE 365 + ++ Sbjct: 360 EYMD 363 >gi|114643639|ref|XP_001154067.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3 [Pan troglodytes] Length = 455 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 379 EHLIGKKL 386 >gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Pongo abelii] Length = 455 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 379 EHLIGKKL 386 >gi|331269837|ref|YP_004396329.1| DEAD/DEAH box helicase domain-containing protein [Clostridium botulinum BKT015925] gi|329126387|gb|AEB76332.1| DEAD/DEAH box helicase domain protein [Clostridium botulinum BKT015925] Length = 370 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 218/365 (59%), Gaps = 6/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +LG+S ++ + G PTPIQ K+I LV + +DV AQTGTGKT +F+LPM Sbjct: 1 MNFKELGISEDIIKVLKSQGVTTPTPIQEKSIKLVKEENDVIAEAQTGTGKTFAFLLPMF 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + LI+ PTRELA Q+ + K K +L + GG +Q KKL+ Sbjct: 61 ---ENMSPNINTVQGLIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR+LDH R + + ++ +V+DEAD+ML MGF ++ I +Q Sbjct: 118 GNIHLVIATPGRLLDHIKRNTINLQKLKTIVLDEADQMLYMGFKNEVEEIMKHTSKKKQI 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM +++K++ +++ PK + + + T + I+ V T K+ AL + L + Sbjct: 178 LCFSATMNSQVKKLAYRYMKEPKIVSIQSEEVTLKNIKQAVVET-TDRRKQDALCKVLDE 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 M IIFC K+ V NL +L ++G++ IHG+++Q R +++ FK+ IQ ++ Sbjct: 237 DNPFM--AIIFCRTKRRVDNLEDALHERGYNCKKIHGDLNQAKRERVMKEFKKMDIQYLI 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HV+++D+P AE+YIHRIGRTGRAG G+ + +D + +D I Sbjct: 295 ATDVAARGLDISGVTHVYSYDIPENAESYIHRIGRTGRAGEEGETCLFIDPKDKRTLDII 354 Query: 361 EKLIE 365 EK I+ Sbjct: 355 EKEIK 359 >gi|90408914|ref|ZP_01217050.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3] gi|90309973|gb|EAS38122.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3] Length = 431 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 220/374 (58%), Gaps = 19/374 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGL ++ + + Y +PTPIQ + IP +L+ HD+ A TG+GKTA+F LP+L Sbjct: 9 NFTELGLIQPLLARLTELEYQQPTPIQAQAIPSILRGHDLIAGANTGSGKTATFALPLLQ 68 Query: 62 -ILEKGRARVRMPRT---------LILEPTRELAAQVADNFEKYGKNYN--LTVALLIGG 109 I E+ +A+ + + LIL PTRELA QVAD+ + Y ++N + + GG Sbjct: 69 HIFEQQQAQKNVSNSREKGNYVTSLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGG 128 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 + Q L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + Sbjct: 129 VSANTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVQCLVLDEADRMLSLGFTDELSA 188 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQY 228 + +L+P +QTLLFSAT +++Q +++ L P +E+ S+ A T ++ F Q Sbjct: 189 LLALLPKKKQTLLFSATFPEQVQALTQELLNEP--VEIQLQSADASTLVQRVFTVNKGQ- 245 Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 K ALL L++ + +IF N K+N +L L K+G + HG Q +R ++L Sbjct: 246 --KTALLAHLIKHHQ-WRQALIFVNAKRNCDHLAEKLSKRGITAEVFHGAKGQGARDRVL 302 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 +FK G I +++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A +L Sbjct: 303 ESFKAGEINVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSL 362 Query: 349 VAKEDIKHIDAIEK 362 + ED H IEK Sbjct: 363 IDHEDYHHFKIIEK 376 >gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01] gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01] Length = 428 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 216/370 (58%), Gaps = 15/370 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F+DLGL ++ + + Y +PTPIQ + IP VL D+ A TG+GKTA+F LP+L Sbjct: 9 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 68 Query: 61 -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 L++ + LIL PTRELA QVAD+ + Y ++N + + GG+ Sbjct: 69 QIHEDAPLDRRAGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 128 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + I L Sbjct: 129 TQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 188 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT ++++ ++ L +P IEV S+ A T ++ F + +K Sbjct: 189 LPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVF---EVEKGRKT 243 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ALL L+Q Q + +IF N K + +L L K+G HG+ Q SR +IL +FK Sbjct: 244 ALLAHLIQ-QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFK 302 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I +++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A +L+ E Sbjct: 303 SGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 362 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 363 DYHHFTIIEK 372 >gi|84385240|ref|ZP_00988272.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01] gi|84379837|gb|EAP96688.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01] Length = 459 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 222/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ + L P+++ + GY + TPIQ ++P +L DV G +TG+GKTA+F L +L Sbjct: 6 FSSIALKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ +L+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 66 LRVKRFRVQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH R ++ ++ + LV+DEADRML+MGF + + P RQTL Sbjct: 123 GAHILVGTPGRILDHLERERIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++ V++ + NP+ ++V + + +I+ F ++ AL LL Sbjct: 183 LFSATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN KK V N+ L +GFSV +HG+++QR R + L F TI ++VA Sbjct: 242 QP--ESAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G A + +++++ + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDMPIE 367 >gi|57640241|ref|YP_182719.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1] gi|57158565|dbj|BAD84495.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1] Length = 406 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 139/363 (38%), Positives = 210/363 (57%), Gaps = 6/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 M F +LGLS V AV G+ PT IQ + IPL+L D+ G ++TG+GKTA+F LP+ Sbjct: 1 MSFRELGLSSASVEAVERKGFSIPTDIQREVIPLLLSAESDIVGQSKTGSGKTAAFGLPI 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +++ +R + LIL PTRELA QV D + V + GG P Q + L Sbjct: 61 LDSIDES---IREVQALILTPTRELAIQVTDELRSLRGKRRIYVYSVYGGQPIGPQIRAL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E G +++ TPGR+LDH NRG L ++ + V+DEADRMLDMGF I+ I P ++ Sbjct: 118 EGGVHIVVGTPGRVLDHINRGTLNLDGVRFFVLDEADRMLDMGFQEDIEAIFRATPKEKR 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM ++ +++ +++NP+ + V+ +E ++ ++ LL ++L Sbjct: 178 VLMFSATMPMDVLLLAKKYMRNPEVVIVSRDELVPGEVEQEYIEAVPH--RRFDLLTKIL 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + GI+FC K L L GF A++G++ Q +R K + FK +++ Sbjct: 236 SDESNEFYGIVFCQTKAETRELSMRLRAAGFRAEALNGDMSQPAREKTFNRFKARKTKIL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+P++ HV N+ +P E YIHRIGRTGR G+ GKA T +A +++ Sbjct: 296 VATDVAARGLDVPEITHVINYSIPMNPEQYIHRIGRTGRMGKKGKAITFIAPGELRRFRY 355 Query: 360 IEK 362 I K Sbjct: 356 ITK 358 >gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27] gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27] Length = 492 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 215/369 (58%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ L Sbjct: 375 EIDSEIELL 383 >gi|88799091|ref|ZP_01114671.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297] gi|88778074|gb|EAR09269.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297] Length = 579 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 218/363 (60%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL+P ++ + GY PTPIQ + I +L +DV G+AQTGTGKTA+F LP+L Sbjct: 5 LTFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLL 64 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + ++ + + P+ L+L PTRELA QVA+ F+ Y + N V + GG Q + L Sbjct: 65 SRIDTTKNK---PQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRAL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++ V++ TPGR++DH RG L +++++ LV+DEAD ML MGFI I I P +Q Sbjct: 122 KQNPQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQ 181 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM +++++++ + ++P +IE+ S + IE + A+ K L ++L Sbjct: 182 TALFSATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQ--LVWRARGLDKLDGLTRIL 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D IIF + L L +G++ A+ G + Q+ R ILS K+G + ++ Sbjct: 240 EIED-WNAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDII 298 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DI + HV N+D+P Y HRIGRTGRAGR GKA + + I Sbjct: 299 IATDVAARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRD 358 Query: 360 IEK 362 IE+ Sbjct: 359 IER 361 >gi|322509533|gb|ADX04987.1| Putative ATP-dependent RNA helicase [Acinetobacter baumannii 1656-2] Length = 561 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 9 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 68 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 69 LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 127 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 128 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 186 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + P+RI + T ST I T KK Sbjct: 187 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 246 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L L + +T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 247 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 304 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 305 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 364 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E +E +++ Sbjct: 365 RERGKIRALEDYLEARLN 382 >gi|296392647|ref|YP_003657531.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus rotundus DSM 44985] gi|296179794|gb|ADG96700.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM 44985] Length = 495 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 150/412 (36%), Positives = 232/412 (56%), Gaps = 26/412 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ P++V ++ AG IQ + +PL L HD+ G A+TG GKT +F +P+L Sbjct: 10 FAELGVHPEIVASLAAAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGIPLLQR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT------VALLIGGIPFEAQN 116 + + A +PR L++ PTREL QV ++ K L+ + L GG P+E Q Sbjct: 70 VAEAAAE-DIPRALVVVPTRELCLQVTNDLVDACKQLKLSDGRPTRIVSLYGGRPYEGQI 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 LE+G DV++ TPGR+LD + RG L +N I +LV+DEAD MLD+GF+P ++ I + +P Sbjct: 129 ATLEKGVDVVVGTPGRLLDLWGRGNLKLNAIRMLVLDEADEMLDLGFLPDVEKIMAKLPT 188 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA---ETIEHCFVATYAQYSKKCA 233 +QT+LFSAT+ + ++ F+ P I + + A T +H + A K Sbjct: 189 GKQTMLFSATIPGPVLTLARTFMTQPTHIRAESHDTAAVHERTTQHVY---RAHALNKDE 245 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L+ + LQ++ +IF K++ L L ++GFS ++HG++ Q +R + LS F++ Sbjct: 246 LVSRFLQAEGRGTT-MIFTRTKRSAGKLADELVERGFSAGSLHGDMSQGAREEALSGFRK 304 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I+++V +D+AARG+DI + HV N+ P + Y+HRIGRTGRAGR G A TLV ED Sbjct: 305 GKIEILVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGIAITLVDWED 364 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 + + I + L+ PP + H + IP+ STG Sbjct: 365 LPRWEHINTAL---------GLNHAEPPET---YSNSPHIYTDLGIPEGSTG 404 >gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC BAA-613] gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC BAA-613] Length = 569 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 225/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L +++ A+ + G+ + +PIQ + IP+ ++ D+ G AQTGTGKTA+F LP+L Sbjct: 6 FDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 +K +V+ + ++L PTRELA QVA+ ++ K + + V + GG Q + L+ Sbjct: 64 -QKVDPKVKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVKQIRSLKD 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH R + ++++ +V+DEAD ML+MGF+ ++ I S +P RQTL Sbjct: 123 GTQVIVGTPGRVMDHMRRKTVKVDHVLTVVLDEADEMLNMGFLEDMETILSQLPEERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +FSATM + +++ F ++P + V T + + + K ++ +LL Sbjct: 183 MFSATMPQAIAEIARKFQKDPVTVRVIKKELTVPKVTQYYYEVKPK--NKVEVMSRLLDM 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 K I+FCN K+ V +L L+ +G+ +HG++ Q R +++ +F+ G ++VA Sbjct: 241 Y-APKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR GKAF+LV +++ + I+ Sbjct: 300 TDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEVYKLRDIQ 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RYCKTKI 366 >gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens] Length = 455 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSILL 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 379 EHLIGKKL 386 >gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146] gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146] Length = 448 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 150/431 (34%), Positives = 234/431 (54%), Gaps = 13/431 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L +++ A+ D GY +PT IQI IP + DV G A TGTGKTA+F+LP L Sbjct: 5 NFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + PR LIL PTRELA QVAD + ++ +L + + GG+ + + Sbjct: 65 HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFN 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D+++ TPGR+L + +E L++DEADRMLDMGF I+ +++ + RQT Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQT 184 Query: 181 LLFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ +D + + L +P + P + I+ + + K ALL LL Sbjct: 185 LLFSATLESDAVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRADS-LKHKTALLCNLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K+ +IF +++ V L L + G C + G + Q R + + +G + ++ Sbjct: 244 RQPDVTKS-VIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIPD+ HVFNFD+P A+ Y+HRIGRT RAGR G A +L+ D + Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGK 362 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 + + +++ + + + +L P + + KN P K R +K QK Sbjct: 363 VSRYVQEPLK--SRVVDNLRPETKAPSL-------KNKGKPSKKVQAKRAQKKLDEQKKK 413 Query: 420 IPLKESEKISK 430 + K + SK Sbjct: 414 VKTKVRHRDSK 424 >gi|238650986|ref|YP_002916842.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic] gi|238625084|gb|ACR47790.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic] Length = 410 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 215/364 (59%), Gaps = 13/364 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ + +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 3 NFNLSEELIIVLETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 62 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K +Y + A+LIGG P Q +L++ Sbjct: 63 KNKTTA-----LILVPTRELATQIHSTLNKVTTSYKINSAVLIGGAPMPKQFMQLKKNPK 117 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P RQ L+FS Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + VS+ +L NP RI V + A I E V+ ++S AL +QL + Sbjct: 178 ATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFS---ALTKQLGNRE 234 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ IIF K++ L L+ + + AIHG++ QR R +++ +F++ ++MVA+ Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ AI++ Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351 Query: 363 LIEK 366 L+ K Sbjct: 352 LVNK 355 >gi|91781411|ref|YP_556617.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400] gi|91685365|gb|ABE28565.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400] Length = 467 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 146/392 (37%), Positives = 219/392 (55%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P + + GYV+ TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 11 FSQLSLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R + ++L PTRELA QV + + N+ V L GG P Q LE Sbjct: 71 LD---VRNFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTL 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ FL+NPK +++ + + + T + LL + Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 248 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + ++ + ++E Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLE 363 Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387 + ++ V+W +L++ L PP+E + I Sbjct: 364 QAQKRDVEWHKLSELTATSNEPLLPPMETLQI 395 >gi|299142021|ref|ZP_07035155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris C735] gi|298576483|gb|EFI48355.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris C735] Length = 625 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 229/375 (61%), Gaps = 10/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S + A+ + G+ P P+Q + IP +L ++DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLPLL- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K A+ R + ++L PTREL Q+AD+ + + K N + + + GG Q + ++ Sbjct: 63 --QKVDAQNRATQAIVLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRPQIRTIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D NRG + +N + +V+DEAD ML+MGF I I +P R T Sbjct: 121 HGVQIIVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQLPDDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++KV++++L + K I V + + AE + H + Y +SK L + + Sbjct: 181 LLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIY---YLVHSKDKYLALKRIV 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 IIFC K + L K G++ A+HG++ Q+ R + F++ T+QL+V Sbjct: 238 DFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + +++ ++ + I Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKVRQI 357 Query: 361 EKLIEKKVDWLNGDL 375 EK I K D+++G+L Sbjct: 358 EKQIGK--DFIDGEL 370 >gi|143456452|sp|Q0DB53|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group] gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group] Length = 602 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 154/398 (38%), Positives = 218/398 (54%), Gaps = 31/398 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL V+ V GY PTP+Q ++P+ L D+ AQTG+GKTA+F LP+++ Sbjct: 86 FEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSG 145 Query: 63 LEKG--------------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIG 108 L RA + PR L+L PTRELAAQ+ + +K+ L V + G Sbjct: 146 LVAAGGSGIGHRERSSFNRAAAK-PRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYG 204 Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168 G P Q + LERGAD+L+ TPGR++D R K+ + I+ LV+DEADRMLDMGF P I+ Sbjct: 205 GTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIR 264 Query: 169 NITSLVPF----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT 224 I + RQT+LFSAT E+Q+++ +FL N I V S+ + I V Sbjct: 265 KIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQK-VEL 323 Query: 225 YAQYSKKCALLQQLLQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 + K+ LL L + + N ++F K+ +L + L +GF AIHG Sbjct: 324 LSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHG 383 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 + Q+ R L +FK G +MVA+D+A+RGLD+P+V HV N+D+P E+Y+HRIGRTG Sbjct: 384 DRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTG 443 Query: 338 RAGRHGKAFTLVAKEDIKHIDA-IEKLIEKK---VDWL 371 RAG+ G A + D +E + E K DWL Sbjct: 444 RAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWL 481 >gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20] Length = 492 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADRILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ K++ Sbjct: 375 EIDSKIELF 383 >gi|225437591|ref|XP_002277419.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743992|emb|CBI36962.3| unnamed protein product [Vitis vinifera] Length = 771 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/356 (39%), Positives = 213/356 (59%), Gaps = 4/356 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D G SP+++ A+ GY KPTPIQ + P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 228 FEDCGFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 287 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ A+ P +I PTRELA Q+ +K+ K Y + V+ + GG+ Q K+L+ Sbjct: 288 IMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELK 347 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++I TPGR++D L M LV+DEADRM D+GF P I++I + RQT Sbjct: 348 SGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 407 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++K++ L +P R+ V E I + K LL +L Sbjct: 408 LLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPG 467 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F ++K V + L ++G + A+HG+ DQ SRM IL FK G +++ Sbjct: 468 MIDD-GDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLI 526 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 A+D+AARGLDI + V NFD+ + ++HRIGRTGRAG + G A+TL+ ++ + Sbjct: 527 ATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEAR 582 >gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens] Length = 455 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ +PL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 379 EHLIGKKL 386 >gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1 [Callithrix jacchus] Length = 455 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 379 EHLIGKKL 386 >gi|240172122|ref|ZP_04750781.1| putative ATP-dependent RNA helicase [Mycobacterium kansasii ATCC 12478] Length = 504 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 146/375 (38%), Positives = 215/375 (57%), Gaps = 14/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA LG+ ++V A+ + G P IQ T+PL L DV G A+TG GKT +F +P+L Sbjct: 10 LSFAQLGVRDEIVRALREKGIEHPFAIQELTLPLALAGEDVIGQARTGMGKTFAFGVPLL 69 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGIP 111 T R PR L++ PTREL QV D+ K L+V + GG Sbjct: 70 QRITSDTAARPLTGTPRALVVVPTRELCLQVTDDLATAAKYLTAEETRRLSVVSIYGGRA 129 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 +E Q + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I Sbjct: 130 YEPQVEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERIL 189 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYS 229 +P RQ++LFSATM D + ++ F+ P I P S A +T E +A Sbjct: 190 RQIPAERQSMLFSATMPDPIITLARTFMVQPTHIRAEAPHSLAVHDTTEQFVYRAHAL-- 247 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K L+ ++LQ++D +IF K+ + L+++GF+V A+HG++ Q +R K L Sbjct: 248 DKVELVSRILQARDRGAT-MIFTRTKRTAQKVADELKERGFAVGAVHGDLGQIAREKALK 306 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 F+ G + ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G A TLV Sbjct: 307 AFRGGDVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 366 Query: 350 AKEDIKHIDAIEKLI 364 +++ I+ + Sbjct: 367 DWDELDRWTTIDTAL 381 >gi|86133373|ref|ZP_01051955.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] gi|85820236|gb|EAQ41383.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] Length = 606 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 220/367 (59%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F ++GL ++ A+ D GY KPT IQ K IP ++ D+ AQTGTGKTA+F LP+L Sbjct: 4 FKEIGLKAPIIKALTDLGYEKPTVIQEKAIPQIISSDTDLKAFAQTGTGKTAAFSLPILE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +LE+ V+ +IL PTRELA Q+ +N + + K N+ V + GG E Q + L+ Sbjct: 64 LLEEDNNNVQ---AIILSPTRELAVQIGNNIKDFCKYLKNVKVTTVYGGSSMEDQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G+ +++ TPGR +D NR L + N+ LV+DEAD ML+MGF + + P T+QT Sbjct: 121 KGSQIVVGTPGRTVDLINRRALKLGNVRWLVLDEADEMLNMGFKEELDKVLEATPETKQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT E++ ++ N++ P + +S +E + H + A + ++ AL + Sbjct: 181 LLFSATFPREVEAIARNYMTTPVEVTSGEKNSGSENVSHEYYAV-TERTRYPALKRIADL 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D IIFC ++ + +L K G++ ++HG++ Q R ++ F++ TIQ++V Sbjct: 240 NPDIY--AIIFCRTRRETQEVADNLIKDGYNADSLHGDLSQAQRDSVMGKFRKKTIQILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ ++ HV N +P++ ENY HR GRTGRAG G + LV + + I Sbjct: 298 ATDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNKGVSIVLVNNREKGKLRVI 357 Query: 361 EKLIEKK 367 E++I++K Sbjct: 358 ERIIKQK 364 >gi|319951635|ref|YP_004162902.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM 14237] gi|319420295|gb|ADV47404.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM 14237] Length = 633 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 224/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F LGL ++ A+ D G+ P+ +Q K IP++L D+ +AQTGTGKTA+F P++ Sbjct: 4 FEALGLKKSILDAITDMGFETPSDVQEKAIPILLGDDTDLVALAQTGTGKTAAFGFPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 +K A R + LIL PTREL Q+ + + Y K N+ V + GG Q ++++ Sbjct: 63 --QKIDADSRTTQGLILSPTRELCLQITNEMQSYSKYEKNINVVAIYGGASITDQARQIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D +RG + ++ I+ ++DEAD ML+MGF I+ I S P + T Sbjct: 121 RGAQIIVATPGRMKDMMSRGLVDISKIDYCILDEADEMLNMGFFEDIKEILSDTPKEKST 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++ F+++P+ I V +S A T++H + + + L++L Sbjct: 181 WLFSATMPREVATIAKKFMRSPQEITVGAKNSGASTVQHEYYVVSGR--DRYPALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + +IFC K++ + SL + G++ A+HG++ Q R ++S+F++ IQ++V Sbjct: 239 TNPDIFS-VIFCRTKRDTQKVAESLIEDGYNAGALHGDLSQNQRDLVMSSFRKKQIQILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P+ E Y HR GRTGRAG+ G + ++ + +++ I AI Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRKIKAI 357 Query: 361 EKLIEKK 367 E I +K Sbjct: 358 ENKIGQK 364 >gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f. nagariensis] gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f. nagariensis] Length = 622 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 212/373 (56%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +G P ++ + AG+ PTPIQ + P+ L D+ IA+TG+GKT F+LP + Sbjct: 124 FESVGFPPDILDEIRRAGFKYPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLPGMLH 183 Query: 63 LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ R R P L+L PTRELA Q+ +K+G++ + + GG P Q + ++ Sbjct: 184 IQQTRKDPRSGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQLRDIQH 243 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR+ D G++ + + LV+DEADRMLDMGF P IQ I +P RQTL Sbjct: 244 GVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPRQRQTL 303 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS------STAETIEHCFVATYAQYSKKCALL 235 FSAT E++ ++ F+ N + + V + +H V + +K L Sbjct: 304 FFSATWPREVKHIAAQFVVN-QTVHVFIGGVEEKLVANKSITQHVLVLNSSH--EKFGEL 360 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++++S+ IIFC K+ L + + ++ F AIHG+ Q R +L FK+G Sbjct: 361 SRIIRSKPAGTRIIIFCTTKRMCDQLSYQMSRE-FRAAAIHGDKKQSERDYVLQAFKDGR 419 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++VA+D+AARGLDIP+V V NFD P E+YIHRIGRTGRAG G+AFT + ED K Sbjct: 420 TPILVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGEAFTFMTGEDAK 479 Query: 356 HI-DAIEKLIEKK 367 H D I+ + E + Sbjct: 480 HARDLIQVMREAQ 492 >gi|182419575|ref|ZP_02950823.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521] gi|237668830|ref|ZP_04528814.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376610|gb|EDT74185.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521] gi|237657178|gb|EEP54734.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 480 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 219/363 (60%), Gaps = 6/363 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ +S +++ AV GY KP+ +Q K IP ++ DV +QTG+GKTA+F +P Sbjct: 4 EFSKFNISEEILKAVDGLGYKKPSEVQEKVIPEIILNKDVIVKSQTGSGKTAAFAIP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 I EK P+ L+L PTRELA QV+++F G+ + + G P Q + L++ Sbjct: 61 ICEKVDWNENAPQVLVLSPTRELAVQVSEDFVNIGRFKRIKSVAVFGKQPISEQARALKQ 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V+ TPGR+LDH +RG L + I+ VIDEAD ML+MGFI ++ + +P + T Sbjct: 121 KTHVVCGTPGRVLDHIDRGSLDVKKIKYFVIDEADEMLNMGFIGQVEGVIRRLPKKKVTT 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT++DE++ + E ++ P I + + IEH Y Y+++ LL +LL Sbjct: 181 LFSATISDEIRTLCEKYMDRPVDISIEKQKVVNDNIEHGLY--YVDYNERFKLLNELLIC 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + +IF K+NV + + L+ +G+S IHG + Q+ R+ + +F++G +++ A Sbjct: 239 EKP-ETAVIFGRTKENVDEIYNFLKSKGYSCGRIHGGMLQKERLSAMDSFRKGEFRILSA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI ++ HV NF++P E Y+HRIGR+GRAG+ GKA ++ +K +++ IE Sbjct: 298 TDVAARGIDIENITHVINFELPVEKEAYVHRIGRSGRAGKSGKAISICSKHGDRYLKNIE 357 Query: 362 KLI 364 + I Sbjct: 358 EYI 360 >gi|149372587|ref|ZP_01891699.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [unidentified eubacterium SCB49] gi|149354630|gb|EDM43194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [unidentified eubacterium SCB49] Length = 626 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 223/369 (60%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F LGL+ +++ A+ D G+ P+ +Q + IP++L+ D+ +AQTGTGKTA+F PML Sbjct: 4 FKALGLNDELLQAITDMGFETPSEVQEQAIPILLEEDTDLVALAQTGTGKTAAFGFPML- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +K R + LIL PTREL Q+ + + YGK+ L V + GG Q ++++ Sbjct: 63 --QKIDVASRTTQGLILSPTRELCMQITNEMKSYGKHMKGLNVVAIYGGASISDQARQIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA +++ TPGR+ D +R + ++ IE V+DEAD ML+MGF I I S P + T Sbjct: 121 KGAQIIVATPGRMKDMISRRMIDISKIEYCVLDEADEMLNMGFHEDITEILSHSPQEKST 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++ F+ P+ I V + ++ +E + H + A+ + L++L Sbjct: 181 WLFSATMPREVASIAKEFMYQPQEITVGSKNTGSENVTHEYYLVNAR--DRYQALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + ++FC K++ + L + G+S AIHG++ Q R ++ F+ IQ+MV Sbjct: 239 ANPEIFS-VVFCRTKRDTQKVAEQLIQDGYSAGAIHGDLSQNQRDIVMKQFRSRQIQMMV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+ +P+ E Y HR GRTGRAG G + +V+K +++ I +I Sbjct: 298 ATDVAARGIDVDNITHVINYQLPDEVETYTHRSGRTGRAGNQGISIVIVSKSEVRKIRSI 357 Query: 361 EKLIEKKVD 369 EK I+KK + Sbjct: 358 EKKIQKKFE 366 >gi|147821303|emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera] Length = 771 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/356 (39%), Positives = 213/356 (59%), Gaps = 4/356 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D G SP+++ A+ GY KPTPIQ + P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 228 FEDCGFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 287 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ A+ P +I PTRELA Q+ +K+ K Y + V+ + GG+ Q K+L+ Sbjct: 288 IMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELK 347 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++I TPGR++D L M LV+DEADRM D+GF P I++I + RQT Sbjct: 348 SGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 407 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++K++ L +P R+ V E I + K LL +L Sbjct: 408 LLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPG 467 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F ++K V + L ++G + A+HG+ DQ SRM IL FK G +++ Sbjct: 468 MIDD-GDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLI 526 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 A+D+AARGLDI + V NFD+ + ++HRIGRTGRAG + G A+TL+ ++ + Sbjct: 527 ATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEAR 582 >gi|302759400|ref|XP_002963123.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii] gi|302796878|ref|XP_002980200.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii] gi|300151816|gb|EFJ18460.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii] gi|300169984|gb|EFJ36586.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii] Length = 574 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 210/376 (55%), Gaps = 25/376 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++ + GLS +++ AV AGY P+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPMLT Sbjct: 155 NWEEGGLSTELLKAVNKAGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 214 Query: 62 ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + + P +++ PTRELA Q+ + K+ ++ V ++GG E Q Sbjct: 215 YISRLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIHVVSIVGGQSIEEQG 274 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL +G +++I TPGR+LD R ++N +V+DEADRM+DMGF P + + +P Sbjct: 275 FKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 334 Query: 177 T-----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219 + R T +FSATM +++++ +L+NP + + T T + I Sbjct: 335 SNLKPENEDAELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLITQ 394 Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279 + + S+K LQ++L K I+F N KK L L+K G+ V +HG Sbjct: 395 NVLMV--KDSEKLDRLQRMLNDLAD-KTAIVFVNTKKAADGLARQLDKLGYRVTTLHGGK 451 Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339 Q R L F+ +VA+D+A RG+DIPDV HV NFD+PN E Y HRIGRTGRA Sbjct: 452 TQEQREISLEGFRSKRYNCLVATDVAGRGIDIPDVAHVINFDMPNNIEMYTHRIGRTGRA 511 Query: 340 GRHGKAFTLVAKEDIK 355 G+ G A T + D + Sbjct: 512 GKTGVATTFLTLGDTE 527 >gi|90413445|ref|ZP_01221437.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK] gi|90325533|gb|EAS42010.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK] Length = 626 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 221/369 (59%), Gaps = 6/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L L+ ++ A+ G+V PTPIQ +IPL+L D G AQTGTGKTA+F LP+L Sbjct: 7 EFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + P+ +++ PTRELA QVA + G+N L V + GG Q + L+ Sbjct: 67 KVDLSQHK---PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALK 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+ D +R +L ++ + V+DEAD ML MGF+ + I P + Q Sbjct: 124 NGAHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQR 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++++ + FL++P+RI+V + T + F + +K + ++L+ Sbjct: 184 VLFSATMPPIVKQIVDRFLRSPERIDVAGENRTVSQVSQQF--WIVKGVEKDEAMIRMLE 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + I+F +++ L L +G A+HG+I Q R + + + K G I ++V Sbjct: 242 TEENIDASIVFVRTRQDTERLADWLSSRGCKAAALHGDIPQSLRERTVDHIKRGVIDVLV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLD+ + HVFN+D+P E+YIHRIGRTGRAGR GKA LV I+ + I Sbjct: 302 ATDVVARGLDVQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTI 361 Query: 361 EKLIEKKVD 369 E++ + +++ Sbjct: 362 ERVTKSRME 370 >gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] Length = 559 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 231/405 (57%), Gaps = 19/405 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLG+ P +V A+ ++G + IQ T+PL L+ DV G A+TGTGKT F +P+L Sbjct: 25 FADLGVHPDIVRALSESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQR 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ G P+ L++ PTREL QV+ + + GK + + + GG P+E+Q + L Sbjct: 85 LVTPGDG---TPQALVVVPTRELCLQVSQDLAEAGKYLGVRITSIYGGRPYESQIQSLRS 141 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV+I TPGR+LD + L++ I LV+DEAD MLD+GF+P I+ I +VP RQT+ Sbjct: 142 GVDVVIGTPGRLLDLAEQRNLVLGKISTLVLDEADEMLDLGFLPDIERILRMVPEDRQTM 201 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQ 240 LFSATM + ++ FL+ P I T E Y +S K L+ ++LQ Sbjct: 202 LFSATMPGPILTLARTFLRQPTHIRAEA-GETGAIHERTTQFVYRAHSLDKPELIAKVLQ 260 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ +IF K+ + L ++GF+ A+HG++ Q +R + L F+ G + ++V Sbjct: 261 AEGRGLT-MIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDILV 319 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+ +P + Y+HRIGRTGRAGR G A TLV +++ Sbjct: 320 ATDVAARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTGVAITLVDWDEVPRW--- 376 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 KLI D L D+ P+E ++H + IP+ +TG Sbjct: 377 -KLIS---DELGLDMPE---PVETYSTSKHLFT--DLGIPEDATG 412 >gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group] gi|122247124|sp|Q10MH8|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa Japonica Group] gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group] gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group] Length = 770 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/356 (40%), Positives = 217/356 (60%), Gaps = 4/356 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FAD G +++ A+ GY KPT IQ + +P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 221 FADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 280 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P ++ PTRELA Q+ +K+ K YNL VA + GG+ Q K+L+ Sbjct: 281 IMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELK 340 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++I TPGR++D L M LV+DEADRM D+GF P I++I + RQT Sbjct: 341 AGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 400 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++++ L +P R+ V S E I+ + K LL++L Sbjct: 401 LLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPG 460 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F +K V + L ++GF + A+HG+ DQ SRM+ L FK G ++V Sbjct: 461 MIDD-GDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLV 519 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 A+D+AARGLDI + V NFD+ + +IHRIGRTGRAG + G A+TL+ +++++ Sbjct: 520 ATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVR 575 >gi|313682085|ref|YP_004059823.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM 16994] gi|313154945|gb|ADR33623.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM 16994] Length = 458 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 142/354 (40%), Positives = 209/354 (59%), Gaps = 10/354 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ + GY +PTPIQ + IPLVL+ D+ G AQTGTGKTA+F LP++ Sbjct: 1 MSFTTLGLSAHLLETLSAKGYSEPTPIQAQVIPLVLRGRDILGAAQTGTGKTAAFALPII 60 Query: 61 TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L E G+A R LI+ PTRELA+QVA+ Y + L L GG Q Sbjct: 61 QKLNASSESGQASAR---ALIIVPTRELASQVAEAIRSYAEGLELNCIALYGGANMARQA 117 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K+L G D+++ TPGR+++ +G + ++ IE LV DEAD + DMGFI + I L+P Sbjct: 118 KELSEGVDIIVATPGRLIELNKQGHVPLSRIEYLVFDEADTIFDMGFIREVGQIIDLLPL 177 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ +LFSATMT ++++SE L+ P +E++ + T+ V + +K LL Sbjct: 178 NRQNMLFSATMTGAVKQLSEKILKKPLLVEIDNLKAADMTLRQ--VVHPVEKERKKELLS 235 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S + + ++F K + L G IHG+ +R + LS F+EG+ Sbjct: 236 FLIGSNNYPQV-LVFTRTKTEADEVSAELTASGLKNAVIHGDKKHGARDRALSEFREGSA 294 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 +++VA+D+AARGLDI + V N+D+P+ + +Y+HRIGRTGRAG G A TL++ Sbjct: 295 RILVATDIAARGLDIEGLDVVINYDIPHVSTDYLHRIGRTGRAGNEGLAITLLS 348 >gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN] gi|221229833|ref|YP_002503249.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923] gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae] gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923] Length = 544 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 250/467 (53%), Gaps = 24/467 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LG+ ++V A+ + G +P IQ T+PL L DV G A+TG GKT +F +P+L Sbjct: 34 FAKLGVRDEIVRALAERGIQQPFAIQELTLPLALAGDDVIGQARTGMGKTFAFGVPLLQR 93 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-------NYNLTVALLIGGIPF 112 ++ R PR L++ PTREL QVAD+ K N +V + GG + Sbjct: 94 ISVTTTARPLSGAPRGLVVVPTRELCLQVADDLATVAKYLTADDDNRRFSVVSIYGGRAY 153 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 E Q + L+ GADV++ TPGR+LD +G L ++ + +LV+DEAD MLD+GF P I+ + Sbjct: 154 EPQIEALQTGADVVVSTPGRLLDLCQQGHLQLSGLSVLVLDEADEMLDLGFFPDIERLLG 213 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYSK 230 +P RQ++LFSATM D + ++ F+ P I P S A +T + +A Sbjct: 214 QIPTDRQSMLFSATMPDPIITLARTFMDQPIHIRAEAPHSLAVHDTTQQFVYRAHAL--D 271 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K L+ ++LQ++ +IF K+ + + L ++GF+V A+HG++ Q +R L Sbjct: 272 KVELISRILQARGRGAT-MIFTRTKRTAQKVTNELNERGFAVGAVHGDLGQIARENALEA 330 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 F+ G + ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G A TLV Sbjct: 331 FRTGNVDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVD 390 Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 +++ + I+K + + + + N P ++A A P+K+ RRK Sbjct: 391 WDELHRWETIDKAL--GLGTPDPAETYSNSPHLYTELAIPAEASGTVGTPRKAQ-VKRRK 447 Query: 411 KNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKN 457 + KS ++ K ++ +Q + RG P P N Sbjct: 448 TDRDGDKSGTS-AQAAKAARTSNSVQRHR-----IRGGQPVTGHPTN 488 >gi|295133956|ref|YP_003584632.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia profunda SM-A87] gi|294981971|gb|ADF52436.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia profunda SM-A87] Length = 598 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 223/369 (60%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LGL+ ++ A+ D G+ P+ +Q KTIP++L + D+ +AQTGTGKTA+F P++ Sbjct: 4 FQELGLNSSILKAIEDMGFESPSEVQEKTIPILLDEETDMVALAQTGTGKTAAFGFPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +K + + + LIL PTREL Q+ + + Y K +L + GG Q K++E Sbjct: 63 --QKIDPKSKHTQALILSPTRELCLQITNELKNYSKYEPSLHPVAVYGGASITDQAKQIE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D R ++ IE V+DEAD ML+MGF I I S P + T Sbjct: 121 RGAQIIVATPGRMQDMIRRKLTDISKIEYCVLDEADEMLNMGFYEDITAILSHTPKEKNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++ F++NP + V + + A + H F A+ + A L++L Sbjct: 181 WLFSATMPKEVATIAKKFMRNPVEVTVGSKNMGATNVSHEFYLVNAR--DRYAALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + +IFC K++ + L + G+S A+HG++ Q R ++ +F+ IQ++V Sbjct: 239 ANPDIFS-VIFCRTKRDTQKVAERLIEDGYSAAALHGDLSQNQRDLVMKSFRTRQIQMLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P+ E Y HR GRTGRAG+ G + +V+K +++ I +I Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEVETYTHRSGRTGRAGKLGTSMVIVSKSELRKIKSI 357 Query: 361 EKLIEKKVD 369 E++I++ D Sbjct: 358 ERIIKQSFD 366 >gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group] Length = 696 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/356 (40%), Positives = 217/356 (60%), Gaps = 4/356 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FAD G +++ A+ GY KPT IQ + +P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 147 FADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 206 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P ++ PTRELA Q+ +K+ K YNL VA + GG+ Q K+L+ Sbjct: 207 IMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELK 266 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++I TPGR++D L M LV+DEADRM D+GF P I++I + RQT Sbjct: 267 AGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 326 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++++ L +P R+ V S E I+ + K LL++L Sbjct: 327 LLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPG 386 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F +K V + L ++GF + A+HG+ DQ SRM+ L FK G ++V Sbjct: 387 MIDD-GDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLV 445 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 A+D+AARGLDI + V NFD+ + +IHRIGRTGRAG + G A+TL+ +++++ Sbjct: 446 ATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVR 501 >gi|239503259|ref|ZP_04662569.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD) [Acinetobacter baumannii AB900] Length = 586 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 65 LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + P+RI + T ST I T KK Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L L + +T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 243 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E +E +++ Sbjct: 361 RERGKIRALEDYLEARLN 378 >gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group] gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group] gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group] Length = 1398 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 139/372 (37%), Positives = 224/372 (60%), Gaps = 14/372 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F G P+++ + AG++ PTPIQ +T P+ LQ D+ IA+TG+GKT +++P Sbjct: 604 MTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAF 663 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + + P L+L PTRELA+Q+ D K+G++ ++ L GG Q ++L Sbjct: 664 IHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLREL 723 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERGAD+++ TPGR+ D K+ ++ + LV+DEADRMLDMGF P I+ I +P RQ Sbjct: 724 ERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQ 783 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS---KKCALLQ 236 TL+++AT E+ K++ + L++P ++ + S E + + + Y + K L+ Sbjct: 784 TLMYTATWPKEVTKIAGDLLKDPVQVNI---GSIDELVANKSITQYVEVVPPLDKQRRLE 840 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK---QGFSVCAIHGNIDQRSRMKILSNFKE 293 Q+L++Q+ IIFC+ KK +C L + + F +IHG+ Q R +L+ F+ Sbjct: 841 QILRAQERGSKVIIFCSTKK----MCDQLARDIGRSFGAASIHGDKSQAERDNVLNQFRT 896 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G ++T +++D Sbjct: 897 GRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQD 956 Query: 354 IKHIDAIEKLIE 365 K+ + K++E Sbjct: 957 WKYAGDLVKVLE 968 >gi|291566695|dbj|BAI88967.1| ATP-dependent RNA helicase [Arthrospira platensis NIES-39] Length = 484 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 221/361 (61%), Gaps = 6/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+S + + G+ +PTP+QI+ IP +L DV G+AQTGTGKTA+F LP+L Sbjct: 24 FESLGISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQ 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ A ++ L+L PTRELA QV + + + L V + GG + Q ++L RG Sbjct: 84 IDVHAAGIQ---ALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQRLRRG 140 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181 V++ TPGRILD NRG+L ++ + LV+DEAD ML MGFI ++ I S RQT Sbjct: 141 VQVVVGTPGRILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQTA 200 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM + K+ L++P ++V TP +T + IE +SK AL + +L+ Sbjct: 201 FFSATMDASISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARAL-EPILEL 259 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D ++ IIF K++ +L + L+ G SV HGN++Q R ++L + ++ +VA Sbjct: 260 EDP-ESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIVA 318 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P++ ++Y+HRIGRTGRAGR GKA TL+ D + + IE Sbjct: 319 TDIAARGLDVDHLTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLIQPIDRRKLRNIE 378 Query: 362 K 362 + Sbjct: 379 R 379 >gi|308809810|ref|XP_003082214.1| MGC81303 protein (ISS) [Ostreococcus tauri] gi|116060682|emb|CAL57160.1| MGC81303 protein (ISS) [Ostreococcus tauri] Length = 382 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 225/369 (60%), Gaps = 15/369 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA LGL ++V A + G+ +P+ IQ K+IP LQ DV G+AQTG+GKT +F LP+L + Sbjct: 21 FASLGLCKELVSACEELGWREPSAIQQKSIPEALQGRDVIGLAQTGSGKTGAFALPILQS 80 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L++ R +LIL PTRELA Q+A+ E G+ + A L+GGI +Q L + Sbjct: 81 LLDEPRTY----HSLILSPTRELAIQIAEQVEALGRGIGVRTATLVGGIEMTSQAIMLGK 136 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR++DH K + +++LV+DEADR+L++ F I I ++P R+T Sbjct: 137 RPHVVVGTPGRVVDHLENTKGFGLKALKVLVLDEADRLLNLDFEEEIDKILRVIPQDRRT 196 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L++P ++EV+ ST +++ ++ A++ K C L Sbjct: 197 QLFSATMTSKVQKLQRACLRDPVKVEVSAKYSTVDSLRQHYLFIPAKH-KDC--YATYLF 253 Query: 241 SQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ + I+F C+Q + + + +L GF IHG + Q R+ L FK G Sbjct: 254 NELSASTLIVFARTCDQTRKLALIARNL---GFGAVPIHGQMSQPKRIAALQKFKAGERN 310 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+A+RGLDIP V V N+DVP +++Y+HR+GRT RAGR G A T+V + D++ Sbjct: 311 ILIATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELY 370 Query: 358 DAIEKLIEK 366 IE+LI K Sbjct: 371 QKIERLINK 379 >gi|224024964|ref|ZP_03643330.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM 18228] gi|224018200|gb|EEF76198.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM 18228] Length = 423 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 153/433 (35%), Positives = 246/433 (56%), Gaps = 21/433 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L V+ A+ + + TP+Q TIP++L+ D+ G+AQTGTGKTA+++LP+L Sbjct: 1 MQFSELNLEDSVLDALDAMNFRECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115 L KG +I+ PTRELA Q+ E G +Y + +VA+ G GI FE + Sbjct: 61 NQLSKGNYPEDAINCIIMAPTRELAMQIDQQME--GFSYFMPASSVAVYGGNDGIRFEQE 118 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFAEDIMQIVKYLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT++FSATM ++Q++++ L NP +++ + I+ ++ AQ K ++ Sbjct: 179 KERQTIMFSATMPTKIQQLAKTILTNPVEVKLAVSKPAEKIIQAAYICYEAQ---KLGII 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + L + Q + IIF + K V + +L++ +V +H ++DQ R I+ F+ G Sbjct: 236 ESLFKEQQP-ERVIIFASSKIKVKEVTKALKRLKLNVGEMHSDLDQSQREAIMHEFRNGR 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V++ + Sbjct: 295 INMLVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSETEQN 354 Query: 356 HIDAIEKLIEKKVDWLN-----GDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 IE +EK++ + G+ + NP K + + K ++S +RR+ Sbjct: 355 KFKQIENFLEKEIYKIPVPEELGEAPAYNPRSAKPKGNSQSASGK-----KRSCNGNRRR 409 Query: 411 KNYSSQKSHIPLK 423 K S+ S P K Sbjct: 410 KKKSAPASPSPAK 422 >gi|295696219|ref|YP_003589457.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912] gi|295411821|gb|ADG06313.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912] Length = 526 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 153/360 (42%), Positives = 221/360 (61%), Gaps = 7/360 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS +V A+ D G+ +P+PIQ IPLVLQ DV G AQTGTGKTA+F +P++ + Sbjct: 4 FTDFQLSRRVQQAIDDMGFEEPSPIQAACIPLVLQGKDVIGQAQTGTGKTAAFGVPIIEM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + GR + LIL PTRELA QVA K K + + GG Q + L++G Sbjct: 64 MGTGR----HVQALILTPTRELAIQVAGELRKIAKYARVRTLPIYGGQSIGHQIRALQQG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH RG L ++ + +V+DEAD MLDMGFI I+ I P RQTLL Sbjct: 120 VGVVIGTPGRVLDHLRRGTLKLDKVRTVVLDEADEMLDMGFIEDIEAILKETPQERQTLL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT E+++++ +++NP+ + VN T I+ + + K L +++ S+ Sbjct: 180 FSATFPHEVKQLAVRYMKNPEHVTVNRGEMTVPLIDQIYYKVLER--NKLESLCRIIDSE 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + GIIFC K+ V L +L +G+ V +HG++ Q R +++ F+ G I+ +VA+ Sbjct: 238 D-VSLGIIFCRTKRGVDELTEALLARGYLVDGLHGDLSQAQRDRVMKKFRNGDIEFLVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+D+ +V HV N+D+P E+Y+HRIGRTGRAGR G A TLV + K + IE+ Sbjct: 297 DVAARGIDVTNVTHVINYDIPQDPESYVHRIGRTGRAGRRGLAITLVTPREFKLLKQIER 356 >gi|163750312|ref|ZP_02157553.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99] gi|161329984|gb|EDQ00969.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99] Length = 421 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 220/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G+ KPT IQ +TIPL +++ D+ A TGTGKTASF+LP + Sbjct: 12 MLFEDFLLDPILLESLKAMGHKKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAI 71 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I++ R R L+L PTRELA+Q+ +L + ++ GG+P+ Q + L Sbjct: 72 QHIIDFPRRFSGQARVLVLTPTRELASQIHRYASHLSTGLDLNIVIITGGMPYGPQEEAL 131 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR++++ ++G +E+ VIDEADRMLDMGF ++ + +Q Sbjct: 132 KNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRKQ 191 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T+LFSAT+ ++ + S L +P ++E P S I H ++ K A+L + Sbjct: 192 TMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKI-HQWIHIADNKEHKFAMLCNI 250 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D + I+F ++ V +L L+++G + + G+++Q+ R + L F +G + + Sbjct: 251 LRQEDVTRT-IVFVKTREGVASLEGLLQREGITCSFMRGDMEQKQRFQALGRFTKGEVSV 309 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ ++ HV NFD+P A+ Y+HRIGRT RAG G A +LV DI+ + Sbjct: 310 LLATDVAARGIDVDNISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLVEAHDIRVVG 369 Query: 359 AIEKLIEK 366 IE+ I++ Sbjct: 370 KIERYIDQ 377 >gi|169632326|ref|YP_001706062.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii SDF] gi|169151118|emb|CAO99784.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii] Length = 619 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 145/390 (37%), Positives = 233/390 (59%), Gaps = 15/390 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 9 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 68 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 69 LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 127 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 128 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 186 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + P+RI + T ST I T + K Sbjct: 187 DLAVNRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHK 245 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L + +T+ ++F + +++ L L + G SV A+HG + Q +R + L + Sbjct: 246 KKLLTHWL-ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTARNRRLRSI 304 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 305 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 364 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 + I A+E +E +++ + +PP Sbjct: 365 RERGKIRALEDYLEARLNVSEIEGLEASPP 394 >gi|297562761|ref|YP_003681735.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847209|gb|ADH69229.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 516 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 135/348 (38%), Positives = 205/348 (58%), Gaps = 10/348 (2%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 +S ++ A+ G ++P IQ +P+ L D+ G A+TGTGKT +F LP+L +K Sbjct: 1 MSTELADALEAEGIIEPFLIQELALPIALGGSDIIGQARTGTGKTLAFGLPLLQRAQKDP 60 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127 + PR L++ PTRELA QVA + K + + GG +E Q L+ G DV++ Sbjct: 61 GTPKRPRALVVVPTRELAIQVAADLTTASKRSGTRILTVYGGRSYEPQVNGLKEGTDVVV 120 Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATM 187 TPGR+LD + L ++ + +V+DEAD+MLD+GF+P I+ I + P RQT+LFSATM Sbjct: 121 GTPGRLLDLEKQKHLRLDGVSAVVLDEADKMLDLGFLPDIERILTRTPDDRQTMLFSATM 180 Query: 188 TDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 E+ +S +L+ P + E++ + T + +H F K +L +LLQ+ Sbjct: 181 PSEIVSLSRKYLRRPTHVRASDDDEIDGSAITGQITQHAF---RTHQMDKIEMLARLLQA 237 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D ++ ++FC K+ + LE +GF+V A+HG++ Q R + L F+ G I ++VA Sbjct: 238 SDHGQS-MVFCQTKRACDRVAGDLEARGFAVAAVHGDLGQSQRERALRAFRNGKINILVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +D+AARGLD+ DV HV N++ P + Y HRIGRTGRAGR G A T V Sbjct: 297 TDVAARGLDVDDVTHVVNYETPEDEKTYTHRIGRTGRAGRSGTAVTFV 344 >gi|212693337|ref|ZP_03301465.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855] gi|212664102|gb|EEB24674.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855] Length = 423 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/426 (34%), Positives = 241/426 (56%), Gaps = 19/426 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L V+ A+ + + TP+Q TIP++L+ D+ G+AQTGTGKTA+++LP+L Sbjct: 1 MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115 L KG +I+ PTRELA Q+ E G +Y L +VA+ G G+ FE + Sbjct: 61 NQLSKGGYPEDAINCVIMSPTRELAQQIDQQME--GFSYFLPASSVAVYGGNDGVRFEQE 118 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT++FSATM ++Q++++ L NP I++ + I+ ++ Q K ++ Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQ---KLGII 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L Q Q T + IIF + K V + + ++ +V +H +++Q R +I+ FK G Sbjct: 236 QSLFQDQ-TPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGR 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I +++A+D+ +RG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V++++ Sbjct: 295 INILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQT 354 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 AIE + + + + P E++ A + R G R++ NY Sbjct: 355 QFKAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGSSRKQGNYKG 406 Query: 416 QKSHIP 421 +K+ P Sbjct: 407 KKNGTP 412 >gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685] gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685] Length = 448 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 136/354 (38%), Positives = 207/354 (58%), Gaps = 4/354 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L +++ A+ D GY +PT IQI IP + DV G A TGTGKTA+F+LP L Sbjct: 5 NFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + PR LIL PTRELA QVAD + ++ L + + GG+ + + Sbjct: 65 HLLDFPRKKSGPPRILILTPTRELAMQVADQARELARHTTLDITTITGGVSYINHAEIFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D+++ TPGR+L + ++E L++DEADRMLDMGF I+ + + + +QT Sbjct: 125 TNQDMVVATPGRLLQYIKEENFDCRSVETLILDEADRMLDMGFAKDIETVAAETRWRKQT 184 Query: 181 LLFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ +D + ++ L++P + P + I+ + + K ALL LL Sbjct: 185 LLFSATLESDAVHDFADRLLEDPVDVSAEPPRRERKKIQQWYYRADS-LKHKTALLCHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K+ +IF +++ V L L + G C + G + Q R + + +G + ++ Sbjct: 244 RQPDVTKS-VIFVRKRERVHELVTWLHQAGIQACFLEGELVQAKRNEAIKRMLDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARGLDIPD+ HVFNFD+P A+ Y+HRIGRT RAGR G A +L+ D Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHD 356 >gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 [Oryctolagus cuniculus] Length = 455 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 222/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 379 EHLIGKKL 386 >gi|298489929|ref|YP_003720106.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae' 0708] gi|298231847|gb|ADI62983.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708] Length = 513 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 211/362 (58%), Gaps = 5/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LG+S + V + + PT IQ + IP +L DV G +QTGTGKTA+F LPML Sbjct: 3 LTFQELGISQERVEILEKLSFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPML 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + V+ ++L PTRELA QV D ++ N L V + GG + Q +L+ Sbjct: 63 EKLDVSKKAVQ---AVVLTPTRELAMQVHDAISQFMGNDGLRVLAIYGGQSIDRQMMQLK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR++D RG L ++ ++ V+DEAD ML MGFI + I S P RQT Sbjct: 120 RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIRILSQAPTERQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++++ FL +P + V P + I ++K A LQ +L+ Sbjct: 180 ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKAAPNKINQVAYLIPRHWTKAKA-LQPILE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + +IF ++ L + L+ G SV HG++ Q++R ++L+ F+ ++ +V Sbjct: 239 MEDP-ETALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV NFD+P+ E Y+HRIGRTGRAG+ G A +LV + + A Sbjct: 298 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 357 Query: 361 EK 362 E+ Sbjct: 358 ER 359 >gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus] gi|52782790|sp|Q9CWX9|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName: Full=DEAD box protein 47 gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus] gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus] gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus] gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus] gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus] gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus musculus] Length = 455 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238 LFSATMT ++QK+ L+NP + V++ T E ++ + F+ + + + +L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + +IFC+ N L GF+ +HG + Q R+ L+ FK + Sbjct: 262 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376 Query: 359 AIEKLIEKKV 368 IE LI KK+ Sbjct: 377 RIEHLIGKKL 386 >gi|254228859|ref|ZP_04922281.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262396791|ref|YP_003288644.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|151938536|gb|EDN57372.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262340385|gb|ACY54179.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] Length = 416 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 219/370 (59%), Gaps = 19/370 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL P +V + Y +PTPIQ TIP +L+ D+ G A TG+GKTA+F LP+L Sbjct: 10 FADLGLIPTLVERLEALEYSQPTPIQSHTIPYILEGKDIVGGANTGSGKTAAFSLPILQK 69 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113 + E R LIL PTRELA+QVA N + Y +Y+L TVA+ GG+ Sbjct: 70 IVQQDETNHRRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVN 126 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L G D+++ TPGR+LD + + ++ ++ LV+DEADRML +GF + I +L Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT D++ +S++ L++P +EV S+ A T ++ F + K Sbjct: 187 LPEKKQTLLFSATFPDKVTTLSQHLLRDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 A+L L++ Q + +IF N K +L L K+G + HG+ Q +R ++L FK Sbjct: 242 AVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G IQ+++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G +L+ + Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 361 DYHHFKVIEK 370 >gi|281424769|ref|ZP_06255682.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris F0302] gi|281401139|gb|EFB31970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris F0302] Length = 625 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 229/375 (61%), Gaps = 10/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S + A+ + G+ P P+Q + IP +L ++DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLPLL- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K A+ R + ++L PTREL Q+AD+ + + K N + + + GG Q + ++ Sbjct: 63 --QKVDAQNRATQAIVLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRPQIRTIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D NRG + +N + +V+DEAD ML+MGF I I +P R T Sbjct: 121 HGVQIVVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQLPDDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++KV++++L + K I V + + AE + H + Y +SK L + + Sbjct: 181 LLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIY---YLVHSKDKYLALKRIV 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 IIFC K + L K G++ A+HG++ Q+ R + F++ T+QL+V Sbjct: 238 DFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + +++ ++ + I Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKVRQI 357 Query: 361 EKLIEKKVDWLNGDL 375 EK I K D+++G+L Sbjct: 358 EKQIGK--DFIDGEL 370 >gi|157964817|ref|YP_001499641.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5] gi|157844593|gb|ABV85094.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5] Length = 415 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 142/375 (37%), Positives = 219/375 (58%), Gaps = 13/375 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 8 NFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 67 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K +Y + A+LIGG P Q +L++ Sbjct: 68 KNKTTA-----LILVPTRELATQIHSTLNKVTISYKINSAVLIGGEPMPKQFMQLKKNPK 122 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P RQ L+FS Sbjct: 123 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 182 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + VS+ +L NP RI V + A I E V+ ++S+ L +QL + Sbjct: 183 ATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSE---LTKQLGNRE 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ IIF K++ L L+ + + AIHG++ QR R +++ +F++ ++MVA+ Sbjct: 240 GSV---IIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ AI++ Sbjct: 297 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWHAIDR 356 Query: 363 LIEKKVDWLNGDLSS 377 L+ K L + S Sbjct: 357 LVNKGESTLRSEFRS 371 >gi|160876752|ref|YP_001556068.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS195] gi|160862274|gb|ABX50808.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|315268952|gb|ADT95805.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 419 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 215/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G+ PT IQ +TIP L++ D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDFQLDPSLLESLNAMGHHSPTTIQQETIPSALEQRDILARAPTGTGKTASFLLPSL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LIL PTRELA+Q+ L +A++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRFAGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+L+ TPGR++++ ++G ++IL+IDEADRMLDMGF +Q I +Q Sbjct: 121 AGNVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ +Q+ + L +P I+V P S I H ++ K ALL L Sbjct: 181 NMLFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKI-HQWIHLADDKEHKFALLCHL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +D +K I+F + V +L L K G + G+++Q+ R + LS F +G + + Sbjct: 240 LRQED-VKRTIVFVKTRDIVSSLEGQLLKVGIPCAFMRGDMEQKKRFQALSRFTKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV NFD+P A+ YIHRIGRTGRAG G A +L D++ + Sbjct: 299 LLATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVG 358 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 359 KIERYIEQ 366 >gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus] gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus norvegicus] Length = 455 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238 LFSATMT ++QK+ L+NP + V++ T E ++ + F+ + + + +L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + +IFC+ N L GF+ +HG + Q R+ L+ FK + Sbjct: 262 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376 Query: 359 AIEKLIEKKV 368 IE LI KK+ Sbjct: 377 RIEHLIGKKL 386 >gi|149279609|ref|ZP_01885738.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39] gi|149229645|gb|EDM35035.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39] Length = 620 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 231/367 (62%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F LG+S VV AV D G+ PTPIQ ++IP++L+ +D G+AQTGTGKTA+F LP+L Sbjct: 5 FKLLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLPLLE 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +++ + P+ LIL PTREL Q+ ++ + + KN + V + GG Q +++ Sbjct: 65 LID---FKSNKPQALILCPTRELCLQITNDIKNFSKNTSGANVVAVYGGANIMQQLREIR 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR+LD R + N++ +V+DEAD ML+MGF I +I S P ++T Sbjct: 122 NGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E++++++N++ +P + + T ++ IEH + A+ K A L++++ Sbjct: 182 WLFSATMPPEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYTVRAR--DKYAALKRIVD 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + G++FC K + ++ L K G++ A+HG++ Q+ R K++ F++ +QL++ Sbjct: 240 FNPEIF-GVVFCKTKMDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRHMQLLI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N+ +P+ E+Y HR GRTGRAG+ G + +V ++I I I Sbjct: 299 ATDVAARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKEIGKIRQI 358 Query: 361 EKLIEKK 367 E++I K+ Sbjct: 359 ERIIGKQ 365 >gi|261211120|ref|ZP_05925409.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341] gi|260839621|gb|EEX66232.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341] Length = 460 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 224/367 (61%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ +N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPASIEQIAQSVTRNAMMIKVEATHDTS-SIRQYFYKVDGSAARDEALETLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVKNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKV 368 + ++ ++ Sbjct: 360 EYMDIEI 366 >gi|240103967|ref|YP_002960276.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus gammatolerans EJ3] gi|239911521|gb|ACS34412.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus gammatolerans EJ3] Length = 403 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 219/381 (57%), Gaps = 11/381 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59 M F LGLS + AV G+ PT IQ + IP +L+ D+ G +QTGTGKTA+F LP+ Sbjct: 12 MSFERLGLSESSLEAVRRKGFEVPTDIQREVIPRLLEGEVDIIGQSQTGTGKTAAFALPI 71 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++ V+ +IL PTRELA QVA+ + + V + GG P Q + L Sbjct: 72 IEAIDPNEKTVQ---AIILTPTRELALQVANEIKSLRGKKRVYVYAIYGGQPIGPQIRAL 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ERG V++ TPGR+LDH NRG L ++++ V+DEADRMLDMGF+ I+ I P ++ Sbjct: 129 ERGVHVVVGTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPQEKR 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM + +++ +++NP+ I V+ E ++ +V ++K L+++L Sbjct: 189 ILMFSATMPMGILLLAKKYMRNPEVILVSRDEVVPEMVDQEYVEVLP--ARKYEKLKEVL 246 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 GIIFC+ K+ L L + F A++G++ Q +R + FKEG I ++ Sbjct: 247 GEGFY---GIIFCHTKRETRELSERLRRDSFRADALNGDMSQAARERTFGRFKEGKINVL 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ ++ HV N+ +P E YIHRIGRTGR G+ GKA T + +I Sbjct: 304 VATDVAARGLDVREISHVINYSLPMNTEQYIHRIGRTGRMGKRGKAITFLKPGEIGRFRD 363 Query: 360 IEKLIEKKVDWLNGDLSSLNP 380 I + + KV+ LS P Sbjct: 364 IAR--KAKVEVKRSKLSERIP 382 >gi|50311527|ref|XP_455788.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74660268|sp|Q6CJV1|DRS1_KLULA RecName: Full=ATP-dependent RNA helicase DRS1 gi|49644924|emb|CAG98496.1| KLLA0F15752p [Kluyveromyces lactis] Length = 748 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 148/384 (38%), Positives = 220/384 (57%), Gaps = 16/384 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS V+ + GY P+PIQ IP+ L D+ A TG+GKTA+F++P++ Sbjct: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L A + R ++L PTRELA QVAD + GK N LT L +GG+ Q + L+ Sbjct: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D++I TPGR +DH N ++++EILVIDEADRML+ GF +Q I SL+P RQT Sbjct: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++++ L+ P RI ++ P A+ + F+ + K ALL QL++ Sbjct: 415 LLFSATMNSKIKQLISLSLKKPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIR 474 Query: 241 SQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 D + K ++F +K+ L L G V +HG++ Q R++ ++NFK + + Sbjct: 475 KLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPV 534 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH-- 356 ++ +DLA+RGLDIP + V NFD+P E Y+HR+GRT RAGR G++ T V + Sbjct: 535 LICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 594 Query: 357 ----IDAIE------KLIEKKVDW 370 I ++E K + + VDW Sbjct: 595 VRSAIRSVEENAESGKALSRNVDW 618 >gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta] Length = 410 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 140/363 (38%), Positives = 217/363 (59%), Gaps = 7/363 (1%) Query: 7 GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66 GL + +D + +PT IQ + IPL LQ DV G+A+TG+GKTA+F LP+L L + Sbjct: 1 GLVDTLCKTCIDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLEQ 60 Query: 67 RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R LIL PTRELA Q+++ F+ G + + +L+GG+ AQ LE+ ++ Sbjct: 61 PQRYF---ALILTPTRELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEKKPHII 117 Query: 127 ICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+TLLFSA Sbjct: 118 IATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSA 177 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245 TMT ++QK+ L+NP R+EV+T T E ++ ++ ++ K L+ L ++ Sbjct: 178 TMTKKVQKLQRASLRNPVRVEVSTKYQTVEKLQQYYIFIPVKF-KDVYLVHIL--NELAG 234 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 + +IFC N V L GF+ +HG + Q R+ L+ FK +++++D+A Sbjct: 235 NSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVA 294 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 +RGLDIP V V NFD+P +++YIHR+GRT RAGR G++ T V + D++ IE+LI Sbjct: 295 SRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLIS 354 Query: 366 KKV 368 K++ Sbjct: 355 KQL 357 >gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus ED133] Length = 487 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 144/366 (39%), Positives = 215/366 (58%), Gaps = 15/366 (4%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ +PTPIQ +IP LQ D+ G AQTGTGKT +F +P++ + G+ V+ +LIL Sbjct: 2 GFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQ---SLILA 57 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR 139 PTRELA QVA+ ++ + + V + GG+P E Q K L++G +++ TPGR++DH NR Sbjct: 58 PTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNR 117 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQTLLFSATMTDELQKVSENF 198 L + I L++DEAD M++MGFI ++ I +P RQT+LFSATM +Q + + F Sbjct: 118 RTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQF 177 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 +++PK I+ + IE + T + +K L + I+F K+ V Sbjct: 178 MKSPKIIKTMNNEMSDPQIEEFY--TIVKELEKFDTFTNFLDVHQP-ELAIVFGRTKRRV 234 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 L +L +G+ +HG+I Q R+++L FK I ++VA+D+AARGLDI V HV+ Sbjct: 235 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 294 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 NFD+P E+Y HRIGRTGRAG+ G A T V ++ +I IE +K +S+L Sbjct: 295 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRK-------MSAL 347 Query: 379 NPPLEK 384 PP K Sbjct: 348 RPPHRK 353 >gi|215482158|ref|YP_002324340.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD) [Acinetobacter baumannii AB307-0294] gi|332868649|ref|ZP_08438296.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113] gi|213986281|gb|ACJ56580.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD) [Acinetobacter baumannii AB307-0294] gi|332733221|gb|EGJ64416.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113] Length = 586 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 65 LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + P+RI + T ST I T KK Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L L + +T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 243 KLLTHWL--ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E +E +++ Sbjct: 361 RERGKIRALEDYLEARLN 378 >gi|88803270|ref|ZP_01118796.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P] gi|88780836|gb|EAR12015.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P] Length = 609 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 221/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LGL + A+ D GY +PT IQ K IP ++ R D+ AQTGTGKTA+F LP+L Sbjct: 4 FLELGLKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLPILE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +L+ V+ +IL PTRELA Q+ +N + + K ++ V + GG E Q + L+ Sbjct: 64 LLDSNSGNVQ---AIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG+ +++ TPGR +D R L + N++ LV+DEAD ML+MGF + + P T+QT Sbjct: 121 RGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT E++ +++N++ P I + A+++ H + + + ++ AL + Sbjct: 181 LLFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSV-TERTRYPALKRIADL 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + D IIFC ++ + +L K G+S A+HG++ Q R ++ F++ TIQ++V Sbjct: 240 NPDIY--AIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ ++ HV N +P++ ENY HR GRTGRAG G + LV ++ + I Sbjct: 298 ATDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPI 357 Query: 361 EKLIEKK 367 EK+I+KK Sbjct: 358 EKIIQKK 364 >gi|73996620|ref|XP_863121.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 7 [Canis familiaris] Length = 810 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 152/419 (36%), Positives = 227/419 (54%), Gaps = 47/419 (11%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLMP 452 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +G P +IL PTRELA Q+ + K+GK + +IGGI E Q +L Sbjct: 453 LFLNQG------PYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 506 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--- 177 G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P + Sbjct: 507 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 566 Query: 178 -----------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214 RQT++F+ATM +++++ ++L+ P + + + Sbjct: 567 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 626 Query: 215 ETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK G++ Sbjct: 627 ERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKMGYNA 681 Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332 C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+YIHR Sbjct: 682 CTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHR 741 Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391 IGRTGRAG+ G A T + KED +++ I L +SS P L AQH Sbjct: 742 IGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQHK 794 >gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1 [Ailuropoda melanoleuca] Length = 455 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238 LFSATMT ++QK+ L+NP + V++ T E ++ + F+ + + + +L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + +IFC+ N L GF+ +HG + Q R+ L+ FK + Sbjct: 262 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376 Query: 359 AIEKLIEKKV 368 IE LI KK+ Sbjct: 377 RIEHLIGKKL 386 >gi|213158663|ref|YP_002319961.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057] gi|213057823|gb|ACJ42725.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057] Length = 383 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 144/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K NL + L+GG+ F+ Q K Sbjct: 65 LLNNPVQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L+ D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT T ++ ++ +L P +E+ T +E Q K L Sbjct: 184 KEQRQTLMFSATFTYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ ++ + +IF N++ V L L+K G+ V + G I Q R+K+L FK+G Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 301 KHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 361 FYLPEIEKAIGKKL 374 >gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces pombe 972h-] gi|74654514|sp|Q9P6N8|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3 gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces pombe] Length = 465 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 230/409 (56%), Gaps = 13/409 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ ++ A G+ PTPIQ + IP+VL + DV G+AQTG+GKTA+F LP++ Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + ++L PTRELA Q+++ FE G + + +++GG+ Q L + Sbjct: 108 LWNNPSPFF---AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKK 164 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 VL+CTPGR++DH K + N++ L++DEADR+LDM F P I I ++P R+TL Sbjct: 165 PHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTL 224 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT +++K+ L P R+ V++ ST +T+ ++ + + K L L+ + Sbjct: 225 LFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYL--FFPFKHKDTYLVYLV-N 281 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF + L L GFS +HG + Q +R+ L+ FK G +VA Sbjct: 282 ELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVA 341 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDIP V V N+D+P ++ YIHR+GRT RAGR GK+ LV + D++ IE Sbjct: 342 TDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIE 401 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 I KK+ D + E++ AQ I Q DRRK Sbjct: 402 ATIGKKMQEYEIDKEGVFLLSERVGEAQR------EAIIQMKEIHDRRK 444 >gi|262401852|ref|ZP_06078417.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586] gi|262351824|gb|EEZ00955.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586] Length = 460 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++V+++ +N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPASIEQVAQSVTRNAMMIKVAATHDTS-SIRQYFYNVDGSTARDEALETLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDIAIE 367 >gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group] Length = 1023 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/356 (40%), Positives = 217/356 (60%), Gaps = 4/356 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FAD G +++ A+ GY KPT IQ + +P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 233 FADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 292 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P ++ PTRELA Q+ +K+ K YNL VA + GG+ Q K+L+ Sbjct: 293 IMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELK 352 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++I TPGR++D L M LV+DEADRM D+GF P I++I + RQT Sbjct: 353 AGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 412 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++++ L +P R+ V S E I+ + K LL++L Sbjct: 413 LLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLLSDAEKMPWLLEKLPG 472 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F +K V + L ++GF + A+HG+ DQ SRM+ L FK G ++V Sbjct: 473 MIDD-GDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLV 531 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 A+D+AARGLDI + V NFD+ + +IHRIGRTGRAG + G A+TL+ +++++ Sbjct: 532 ATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVR 587 >gi|150025863|ref|YP_001296689.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum JIP02/86] gi|149772404|emb|CAL43884.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacterium psychrophilum JIP02/86] Length = 644 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 224/371 (60%), Gaps = 12/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F LGL+ ++ A++D G+ PT +Q K IP++L++ D+ +AQTGTGKTA+F P Sbjct: 4 FEQLGLTESLLRAIIDLGFENPTEVQEKAIPMLLEKDIDLVALAQTGTGKTAAFGFP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +++K A R + LIL PTREL Q+ + N+ KY K N V + GG Q + Sbjct: 61 VIQKIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGIN--VVAVYGGASITEQARD 118 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++RGA +++ TPGR+ D NR + ++ I ++DEAD ML+MGF I NI S P + Sbjct: 119 IKRGAQIIVATPGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDEK 178 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATM E+ ++ + F+ +P I V +S + T+ H + A+ + L++L Sbjct: 179 NTWLFSATMPAEVARIGKQFMTDPIEITVGAKNSGSATVSHEYYLVNAR--DRYEALKRL 236 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + ++FC K++ + L + G+S A+HG++ Q R ++ F+ IQ+ Sbjct: 237 ADANPDIFS-VVFCRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKAFRGRQIQM 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ +V HV N+ +P+ E Y HR GRTGRAG+ G + +V K +I+ I Sbjct: 296 LVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSEIRKIS 355 Query: 359 AIEKLIEKKVD 369 +IE++I++K + Sbjct: 356 SIERIIKQKFE 366 >gi|307566011|ref|ZP_07628469.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS 21A-A] gi|307345199|gb|EFN90578.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS 21A-A] Length = 567 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 228/373 (61%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + K TP+Q K IPL+L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MYFDELDLNDDVLDALYDMHFDKCTPVQEKCIPLILKGKDILAVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIP---FEAQN 116 + L KG +I+ PTRELA Q+ + + N ++ + GG ++ + Sbjct: 61 SKLAKGNYADDAINCVIMSPTRELAQQIDQAIQGFSYYLNGISCVAVYGGNDGNRYDQEI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L GA+++I TPGR++ H + G + ++ + V+DEADRMLDMGF I+ I + +P Sbjct: 121 KSLSMGANIVIATPGRLISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKMIANNLPK 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + QT++FSATM ++++ ++++ L+N + I++ S AE I+ Y ++K +++ Sbjct: 181 SCQTIMFSATMPNKIESLAKSLLKNAEIIKL-AVSKPAEKIQQSAYICYE--TQKIGIIK 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++ +S + +K IIF K+ V + SL KQ +H ++DQ R ++ FK I Sbjct: 238 EIFKSGN-LKRVIIFSGSKQKVKKITASLNKQNIKCGEMHSDLDQAQRDDVMFKFKSSQI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI D+ V N+DVP+ E+Y+HRIGRT RA R G A T V++EDI + Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPHDVEDYVHRIGRTARADREGNAITFVSEEDIYY 356 Query: 357 IDAIEKLIEKKVD 369 IE ++K +D Sbjct: 357 FRHIESFLKKTID 369 >gi|295134684|ref|YP_003585360.1| ATP-dependent RNA helicase [Zunongwangia profunda SM-A87] gi|294982699|gb|ADF53164.1| ATP-dependent RNA helicase [Zunongwangia profunda SM-A87] Length = 447 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 224/370 (60%), Gaps = 6/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ + A+ + G KPTPIQ + V+ DV GIAQTGTGKT +++LP+L Sbjct: 1 MSFQDLNLNTPLRNALEEMGIQKPTPIQEQAFAPVMSGRDVVGIAQTGTGKTYAYLLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ + + PR LI+ PTREL QV + +K K NL VA + GG+ Q ++L+ Sbjct: 61 RMLKFSKQK--NPRILIMVPTRELVVQVVEEIDKLAKYINLRVAGIYGGVNINTQQQELQ 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+++ TP R+ D R + + +I+ VIDE D MLD+GF + NI L+P RQ+ Sbjct: 119 RGLDIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPPNRQS 178 Query: 181 LLFSATMTDELQK-VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 ++FSATMT+ +++ ++ENF P++I + + + I+ ++ K LL+ L Sbjct: 179 IMFSATMTETVEEMINENF-NAPEKISIAVSGTPLDNIQQQGY-ILPNFNTKANLLKHLF 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++T K +IF + K+ L SL +K V +H Q R+K + +F EG ++ Sbjct: 237 SDKETFKKILIFISDKRIADRLFDSLGQKFPGEVSLVHTGKSQNYRLKNVEDFDEGLTRI 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 M+A+D+ ARGLD+ V HV NFD PN ENY+HRIGRTGRA + G + +++++++ Sbjct: 297 MIATDVMARGLDLDAVSHVINFDTPNYPENYMHRIGRTGRAEKKGNSILFTTEKELEYLK 356 Query: 359 AIEKLIEKKV 368 AIE+L++ +V Sbjct: 357 AIEELMKMEV 366 >gi|237710076|ref|ZP_04540557.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA] gi|237723636|ref|ZP_04554117.1| ATP-dependent RNA helicase [Bacteroides sp. D4] gi|265753725|ref|ZP_06089080.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA] gi|229437984|gb|EEO48061.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4] gi|229456169|gb|EEO61890.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA] gi|263235439|gb|EEZ20963.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA] Length = 423 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/426 (34%), Positives = 241/426 (56%), Gaps = 19/426 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L V+ A+ + + TP+Q TIP++L+ D+ G+AQTGTGKTA+++LP+L Sbjct: 1 MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115 L KG +I+ PTRELA Q+ E G +Y L +VA+ G G+ FE + Sbjct: 61 NQLSKGGYPEDAINCVIMSPTRELAQQIDQQME--GFSYFLPASSVAVYGGNDGVRFEQE 118 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT++FSATM ++Q++++ L NP I++ + I+ ++ Q K ++ Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQ---KLGII 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L Q Q T + IIF + K V + + ++ +V +H +++Q R +I+ FK G Sbjct: 236 QSLFQDQ-TPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGR 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I +++A+D+ +RG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V++++ Sbjct: 295 INILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQT 354 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 AIE + + + + P E++ A + R G R++ NY Sbjct: 355 QFKAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGSSRKQGNYKG 406 Query: 416 QKSHIP 421 +K+ P Sbjct: 407 KKNGTP 412 >gi|168186565|ref|ZP_02621200.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str. Eklund] gi|169295454|gb|EDS77587.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str. Eklund] Length = 371 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 215/364 (59%), Gaps = 6/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF +LG+S ++ + G PTPIQ +I + + DV AQTGTGKT +F+LP Sbjct: 3 DFKNLGISKNIIDVLSREGIKSPTPIQENSIEFIRKGKDVIAEAQTGTGKTLAFLLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 I E + LI+ PTRELA Q+ + K K ++ + GG ++Q KKL+ Sbjct: 60 IFENISLESNFVQVLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQLKKLKG 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR+LDH NR + ++ ++ LV+DEAD+ML MGF ++ I + QTL Sbjct: 120 NIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIINYTSKKYQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E++K++ ++++PK + V T T + I+ FV K+ +L + L + Sbjct: 180 CFSATMNSEVKKLAYRYMKDPKVVSVKTEEITLKNIKQ-FVVETTDRRKQDSLCKVLDED 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 M IIFC K+ V NL +L K+G++ +HG++ Q R +++ FK Q ++A Sbjct: 239 NPFM--AIIFCRTKRRVDNLEEALHKRGYNCSKLHGDLAQSKRERVMKKFKNMDTQYLIA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HV+++D+P AE+YIHRIGRTGRAG GK + +D + ++ IE Sbjct: 297 TDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLETIE 356 Query: 362 KLIE 365 K I+ Sbjct: 357 KEIK 360 >gi|319426890|gb|ADV54964.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 427 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/362 (39%), Positives = 208/362 (57%), Gaps = 10/362 (2%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LG+ ++ + + YV PTP+Q TIP VL DV A TG+GKTA+F +P+L L Sbjct: 14 LGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVD 73 Query: 66 GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120 + + R L+L PTRELA QVAD+F Y + N L + GG+ AQ + L Sbjct: 74 AKTEDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GADVL+ TPGR+LD + + +N + LV+DEADRML +GF + + +P +QT Sbjct: 134 SGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELTQVLDALPVKKQT 193 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +E+++++ L NP ++ S E+ H V T + K ALL L++ Sbjct: 194 LLFSATFPEEVRELTAKLLNNPLEYQLQ---SEQESTIHQRVITVNR-PMKTALLAHLIK 249 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF + K +L L K+G + HG+ Q +R ++L FK G I +++ Sbjct: 250 -EHLWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLI 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ ED H I Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368 Query: 361 EK 362 EK Sbjct: 369 EK 370 >gi|323499192|ref|ZP_08104170.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] gi|323315825|gb|EGA68858.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] Length = 418 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 153/369 (41%), Positives = 220/369 (59%), Gaps = 18/369 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGL P +V + Y +PTPIQ TIP VL D+ G A TG+GKTA+F LP+L Sbjct: 10 FADLGLIPTLVERLEALEYRQPTPIQSHTIPDVLDGKDIVGGANTGSGKTAAFSLPILQK 69 Query: 62 ILEKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFEA 114 ILE+ + R LIL PTRELA+QVA N + Y +Y+L TVA+ GG+ Sbjct: 70 ILEQEESNRRGNYVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVNP 126 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L G+D+++ TPGR+LD + + ++ ++ LV+DEADRML +GF + I L+ Sbjct: 127 QMLALRGGSDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILELL 186 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCA 233 P +QTLLFSAT D++ ++++ L +P +EV S+ A T ++ F Q K A Sbjct: 187 PKKKQTLLFSATFPDKVTTLAQHLLNDP--VEVQLQSAEASTLVQRVFSVNKGQ---KTA 241 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 +L L++ Q + +IF N K +L L K+G + HG+ Q +R ++L FK Sbjct: 242 VLAHLIK-QHKWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKS 300 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G IQ+++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G +L+ +D Sbjct: 301 GEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDD 360 Query: 354 IKHIDAIEK 362 H IEK Sbjct: 361 FHHFKVIEK 369 >gi|269104326|ref|ZP_06157022.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] gi|268160966|gb|EEZ39463.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] Length = 394 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/341 (41%), Positives = 206/341 (60%), Gaps = 9/341 (2%) Query: 34 LVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG-RARVRMPRTLILEPTRELAAQVADNF 92 ++L DV AQTGTGKTASFVLPML G + R + R LIL PTREL AQVA+N Sbjct: 1 MILLGKDVLAAAQTGTGKTASFVLPMLERFNDGVKVRPKRVRGLILAPTRELVAQVAENI 60 Query: 93 EKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVI 152 EKY K+ N+ + GG+ ++ Q + L G D+L+ TPGR+LD + + ++ +E +V+ Sbjct: 61 EKYSKHLNIKTLAMFGGVEYKHQKQALIEGVDILVATPGRLLDMCTQRAIHLDEVETVVL 120 Query: 153 DEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI-EVNTPS 211 DEADRMLDMGFI I + +P Q LLFSATMT ++++++ ++NP + E++ + Sbjct: 121 DEADRMLDMGFIEAINKVMDRLPLDCQQLLFSATMTRQVRELARTAIENPIELSEISKGN 180 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 + A IE V K +LL +++ D +IF K L L K+ Sbjct: 181 AAASKIEQWLVTV--DKDMKSSLLSHMIKEND-WDQALIFIETKHGAAKLVEQLAKRDIY 237 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 A H Q R ++L +FK G ++LMVA+ +AARG+DI ++ V N+D+P AE YIH Sbjct: 238 AEAFHSGRSQAVRSQLLEDFKSGQLKLMVATGVAARGIDIDNLKRVINYDLPYPAEEYIH 297 Query: 332 RIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK----LIEKKV 368 RIGRTGRAG G+A + V+K++ K++ IE L+E++V Sbjct: 298 RIGRTGRAGASGEAISFVSKDNFKNLCMIESRLGHLLERRV 338 >gi|117918867|ref|YP_868059.1| ATP-dependent RNA helicase RhlB [Shewanella sp. ANA-3] gi|189040046|sp|A0KS84|RHLB_SHESA RecName: Full=ATP-dependent RNA helicase rhlB gi|117611199|gb|ABK46653.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 439 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 235/392 (59%), Gaps = 15/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADL L P+V A+ + G+ TPIQ ++P++LQ D+ G AQTGTGKT +F++ Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ ++ PR +I+ PTRELA Q+A + K+ +L V ++ GG ++ Q K Sbjct: 71 LLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHSHLKVGIVYGGESYDVQRKT 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G D+LI T GRI+D+ +G + + I+ +V+DEADRM D+GFI I+ + +P Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIRFLFRRMPSAD 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ ++Q+++ + + P ++E+ T++ I E F Y K LL Sbjct: 191 QRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIF---YPSQEDKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ +D + I+F N K + NL LE G V + G++ Q+ R++IL F +G Sbjct: 248 LTLIE-EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQ 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 307 LDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYAL 366 Query: 356 HIDAIEKLIEKKVDWLNGD----LSSLNPPLE 383 ++ AIE I + N D L + PP++ Sbjct: 367 NLPAIETYINHSIPVSNYDRDALLEDIPPPVK 398 >gi|297379472|gb|ADI34359.1| ATP-dependent RNA helicase [Helicobacter pylori v225d] Length = 492 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ K++ Sbjct: 375 EIDSKIELF 383 >gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase domain-containing protein [Atopobium parvulum DSM 20469] gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM 20469] Length = 450 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 218/393 (55%), Gaps = 35/393 (8%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA+LGL+ +++ V G+ PTP+Q IP VL DV AQTGTGKTA+F+LP L Sbjct: 3 ITFAELGLNEQILAGVTTLGFSVPTPVQTAAIPAVLAGKDVVASAQTGTGKTAAFMLPTL 62 Query: 61 -------------------------TILEKGRARVR-----MPRTLILEPTRELAAQVAD 90 + E+ R PR LI+ PTRELAAQ+ + Sbjct: 63 QRIAVEKHDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQIDN 122 Query: 91 NFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEIL 150 + + ++ GG ++ Q L++G DVL+ TPGR++D ++ + +I++L Sbjct: 123 VAKSVCASTGQQAVIVTGGAHYKHQIAALQKGCDVLVATPGRLIDLLDKKHTSLEDIQVL 182 Query: 151 VIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 V+DEADRMLDMGF P + I +P QTLLFSAT+ + + L++P+RIE+ Sbjct: 183 VLDEADRMLDMGFWPSVHRIMEQLPKAHQTLLFSATLPASITSTIDALLKDPERIEIART 242 Query: 211 SSTAETIE-HCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQ 268 TA TIE H T Q K LL+ L+ S D + +FC K V ++ +L+ Sbjct: 243 GQTAATIEQHLCSVTQGQ---KPQLLKALIDSFDPAPERVLVFCRTKSRVDSIYKNLKAA 299 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G V +H + Q++R K L F+ +IQ++VA+D+ +RG+DI + V NFDVP E+ Sbjct: 300 GLKVDVMHADRPQKARAKALDRFRSASIQILVATDVMSRGIDIQGIDVVINFDVPLDPED 359 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 Y+HRIGRTGRAG G+A+T + +++ + IE Sbjct: 360 YVHRIGRTGRAGATGQAYTFMGPDEVTPLREIE 392 >gi|149713746|ref|XP_001501494.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 [Equus caballus] Length = 455 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238 LFSATMT ++QK+ L+NP + V++ T E ++ + F+ + + + +L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + +IFC+ N L GF+ +HG + Q R+ L+ FK + Sbjct: 262 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376 Query: 359 AIEKLIEKKV 368 IE LI KK+ Sbjct: 377 RIEHLIGKKL 386 >gi|114706869|ref|ZP_01439769.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506] gi|114537817|gb|EAU40941.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506] Length = 457 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 205/363 (56%), Gaps = 5/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL+ + A+ PTPIQ + IP L D+ GIAQTGTGKTA+F LP+L Sbjct: 6 FDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPLLHH 65 Query: 63 LEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L G+ R + LIL PTRELA Q+A++ + ++ ++ GG+ Q + L Sbjct: 66 LMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQIQALA 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+LD + + + L++DEADRMLDMGF+ + I P RQ+ Sbjct: 126 RGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPDDRQS 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 ++FSATM ++ +S+ L NP+++ V T E I V + Q +KK L+ + Sbjct: 186 MMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQS-VFSVPQRAKKHWLI-DFVS 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 DT + ++F K L L+K G AIHGN Q +R K L F++G I ++V Sbjct: 244 KNDTGRI-VVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVLV 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+ + D+ HV NFD+P E+Y+HRIGRT RAGR G+A LV + + I Sbjct: 303 ATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAKLKQI 362 Query: 361 EKL 363 KL Sbjct: 363 IKL 365 >gi|209515859|ref|ZP_03264721.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] gi|209503707|gb|EEA03701.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] Length = 467 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 219/392 (55%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P + + GY++ TPIQ ++P+ L D+ A+TG+GKTA+F L +L Sbjct: 11 FSELPLPPATLANLTQLGYIEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ AR + ++L PTRELA QV + + N+ V L GG P Q LE Sbjct: 71 LD---ARKFDTQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L++ + LV+DEADRMLDMGF I + P RQTL Sbjct: 128 GAHVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTL 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ FL+NPK +++ ++ + + + + LL + Sbjct: 188 LFSATYPEGIAKLSQQFLRNPKEVKLAERHDDSKIRQRFYEVSEDERLHAVGLLLNHYRP 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T I FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 248 VST----IAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E + HRIGRTGRA + G A +L + +++ + IE Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363 Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387 + ++ V+W +L + L PP+E + I Sbjct: 364 QAHKRDVEWHKLAELKAASNDPLLPPMETLQI 395 >gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A] Length = 492 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 213/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F K + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAKAIM--RLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|326316425|ref|YP_004234097.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373261|gb|ADX45530.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 461 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 151/424 (35%), Positives = 230/424 (54%), Gaps = 15/424 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----V 56 M FA LGLSP +V A G+ PTPIQ++ IP VL DV G AQTG+GKTA+F + Sbjct: 17 MPFAALGLSPALVHAAGALGFDTPTPIQVQAIPAVLDGRDVLGRAQTGSGKTAAFGLPLL 76 Query: 57 LPMLTILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNY---NLTVALLIGGIP 111 +L ++ AR R PR L+L PTRELAAQV + + + L +A+ GG+ Sbjct: 77 QRLLPQAQQAGARPGPRRPRALVLVPTRELAAQVGEVLRELAGHLPGPRLKIAIAFGGVS 136 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 Q L GAD ++ TPGR+LD L ++ ++ LV+DEAD++LD+GF +Q + Sbjct: 137 INPQLMALRGGADAVVATPGRLLDLVEHNALSLSQVQALVLDEADQLLDLGFAEELQRVL 196 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 +L+P RQ LLFSAT + +++E L++P RIE+ TA I +A + ++ Sbjct: 197 ALLPAQRQNLLFSATFEPGVARLAEGLLRDPLRIEIAEAPGTAPDIAQRAIAV--EGPRR 254 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL+QLL + ++F + ++ L + G HG + Q +R ++L F Sbjct: 255 TQLLKQLLTQEPGWTRVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEF 314 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 ++ Q++V +DLAARG+DI + V N+D+P A +Y+HRIGRTGRAG G A + V Sbjct: 315 RDERWQVLVTTDLAARGIDIAGLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTP 374 Query: 352 EDIKHIDAIEK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408 E H + + L V+ + G +L P ++ + AR +P + G Sbjct: 375 EAAPHWQLLARRHGLQALPVEQVAGFEVALAPAAQEAGTQEDAPARPGK-LPPGTGGIKG 433 Query: 409 RKKN 412 R+ + Sbjct: 434 RRPS 437 >gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296] gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296] Length = 565 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 212/371 (57%), Gaps = 9/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+ + A+ G P PIQ T+P+ L D+ G A+TGTGKT F LP + Sbjct: 16 FADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQR 75 Query: 63 L----EKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G A + P+ LIL PTRELA QV ++ K N VA L GG+P E Q Sbjct: 76 VVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQ 135 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L RG +V + TPGRI+D + +G L + ++I+V+DEAD MLD+GF P ++ I S +P Sbjct: 136 AELLRRGLEVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLP 195 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCAL 234 RQ++LFSATM + ++ ++ P RI P ++T Y A + K + Sbjct: 196 EDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEM 255 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++L++ + +IF K++ + L +GF+ +HG+++Q +R + L F+ G Sbjct: 256 IGRILRATGRGRT-VIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTG 314 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N VP + Y+HR GRTGRAG G A TLV +D+ Sbjct: 315 KVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVDWDDL 374 Query: 355 KHIDAIEKLIE 365 I +E Sbjct: 375 PRWKVINDALE 385 >gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera] Length = 688 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 206/373 (55%), Gaps = 25/373 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + LSP+++ AV AGY P+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPMLT Sbjct: 212 WVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 271 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ D K+ + V ++GG E Q Sbjct: 272 ISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGF 331 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 ++ +G +V+I TPGR++D R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 332 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 391 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T + I Sbjct: 392 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQH 451 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + S+K LQ+LL K I+F N KK+ L L+K G+ V +HG Sbjct: 452 VIMVKG--SEKMPKLQKLLDELGD-KTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKS 508 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+A RG+DIPDV HV N+D+P E Y HRIGRTGRAG Sbjct: 509 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 568 Query: 341 RHGKAFTLVAKED 353 + G A T + D Sbjct: 569 KTGVATTFLTLHD 581 >gi|169794570|ref|YP_001712363.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE] gi|260557002|ref|ZP_05829219.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606] gi|169147497|emb|CAM85358.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE] gi|260409608|gb|EEX02909.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606] Length = 619 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 228/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 9 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 68 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 69 LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 127 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 128 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 186 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + P+RI + T ST I T + K Sbjct: 187 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHK 245 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L + +T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 246 KKLLTHWL-ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 304 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 305 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 364 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E +E +++ Sbjct: 365 RERGKIRALEDYLEARLN 382 >gi|91791813|ref|YP_561464.1| ATP-dependent RNA helicase RhlB [Shewanella denitrificans OS217] gi|123166515|sp|Q12S35|RHLB_SHEDO RecName: Full=ATP-dependent RNA helicase rhlB gi|91713815|gb|ABE53741.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 432 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 229/373 (61%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADL L +V+ A+ + G+ TPIQ ++P++L+ D+ G AQTGTGKT +F++ Sbjct: 11 FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR +I+ PTRELA Q+A + K+ L V ++ GG +E Q + Sbjct: 71 LLTTPAPQARELNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESYEVQREV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L++G D+LI T GRI+D+ +G + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAS 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 +R +LFSAT++ ++Q+++ + + +P+++EV T++ I E F Y K LL Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIKEEIF---YPSTEDKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ +D + I+F N K + NL LE G V + G++ Q+ R++IL F G Sbjct: 248 LTLME-EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG G + + + Sbjct: 307 LDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACETYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE+ I V Sbjct: 367 NLPAIEQYIGHSV 379 >gi|322799058|gb|EFZ20513.1| hypothetical protein SINV_09810 [Solenopsis invicta] Length = 710 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/359 (38%), Positives = 216/359 (60%), Gaps = 14/359 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F GL ++ + +GY KPTP+Q IP+++ DV AQTG+GKTA+FVLP+L + Sbjct: 272 FDQSGLRSILLENIKKSGYTKPTPVQKYAIPIIMSGRDVMACAQTGSGKTAAFVLPILHS 331 Query: 62 ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +LE R V+ P +I+ PTREL +Q+ F+K+ N + V ++ GG Q Sbjct: 332 LLENQRDLVKTGSSCEPHAIIISPTRELTSQIYTQFKKFSLNSIIRVEVIYGGTSISHQT 391 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TS 172 K+ G VL+ TPGR+LD RGK++++++ V+DEADRMLDMGF+P I+ I T Sbjct: 392 NKVFNGCHVLVATPGRLLDFIGRGKVVLSSLRFFVLDEADRMLDMGFLPDIEKILDHETM 451 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 + RQ L+FSAT +++Q+++ FL+N + V +E F Q K+ Sbjct: 452 VAAEERQMLMFSATFPNDIQELAGRFLRNYLFLAVGIVGGACADVEQIFYQASGQPDKR- 510 Query: 233 ALLQQLLQSQD---TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 LL++L++ Q+ +++ ++F QK++ + L + + +IHG+ QR R + LS Sbjct: 511 KLLKELIEKQNQLGSIEGTLVFVAQKRHTDFIAAFLSENNYPTTSIHGDRLQREREEALS 570 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 +FK+G + ++VA+ +AARGLDI +V HV NFD+P + Y+HRIGRTGR G GKA + Sbjct: 571 DFKKGKMSILVATAVAARGLDIKNVSHVINFDLPQTIDEYVHRIGRTGRVGNRGKATSF 629 >gi|126643119|ref|YP_001086103.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC 17978] gi|213158859|ref|YP_002320857.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057] gi|126389003|gb|ABO13501.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC 17978] gi|213058019|gb|ACJ42921.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057] Length = 615 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 228/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 65 LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + P+RI + T ST I T + K Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHK 241 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L + +T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 242 KKLLTHWL-ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E +E +++ Sbjct: 361 RERGKIRALEDYLEARLN 378 >gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM 21211] Length = 604 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 135/364 (37%), Positives = 215/364 (59%), Gaps = 11/364 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL ++P + + + G ++ +PIQ +++P +Q D+ G A+TGTGKT +F +P++ Sbjct: 1 MQFTDL-IAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVI 59 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 LE R R R+PR LIL PTRELA QVA+ F+K LTV GG + Q K L Sbjct: 60 DKLEPSRERGRLPRALILAPTRELAKQVAEEFKKSAPELLTLTV---YGGAAYGPQEKAL 116 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DV++ TPGR++DH RG L ++ ++ ++DEAD ML +GF I++I S P TRQ Sbjct: 117 YGGVDVIVGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETRQ 176 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQ 237 T+LFSAT+ + ++ +L++P +++ S A+T++H V ++ A Sbjct: 177 TMLFSATLPAGVTRIGNKYLKDPLVVDLVGESRMQAAQTVQHLKVKVGRTRTRVLADFLT 236 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + I+F K+ V L L +G A+HG++ Q R + L +F+ G ++ Sbjct: 237 IYNPE----RAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVR 292 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP++ V + +P E+Y+HR GRTGRAGR G A + + + + + Sbjct: 293 VLVATDVAARGLDIPEIDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGREL 352 Query: 358 DAIE 361 +E Sbjct: 353 RNLE 356 >gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] Length = 559 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 146/378 (38%), Positives = 226/378 (59%), Gaps = 12/378 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LG+ + V + + G PTP+Q ++IPL++ DV A+TGTGKT +F+LP+L Sbjct: 3 NFQQLGIDEQRVRKLKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPILQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKKL 119 ++ RA P+ LI+ PTRELA Q+ + +K G+ + + + GG E Q +KL Sbjct: 63 QIDPKRA---YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKL 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E G ++I TPGR+LDH RG L + ++ LV+DEAD+ML MGF+ ++ + +P+ RQ Sbjct: 120 EGGRHLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDDVEALIHALPYRRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQL 238 T+LFSATM +++++ N++ P I + S E I+ V SK+ AL + Sbjct: 180 TMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVEC-TDRSKQDALRTMI 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q + IIFC K+ L +L G+ +HG++ Q R ++ F++ +QL Sbjct: 239 EQYNPFLA--IIFCRTKRRASILNDALLAHGYQSDELHGDLSQAKREAVMKRFRDAKLQL 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ V HVFN+D+P+ E+YIHRIGRTGRAG +G A T A +D+ + Sbjct: 297 LVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGNGMAITFAAGKDLNDLQ 356 Query: 359 AIEKLIE---KKVDWLNG 373 IE+ I K+V + +G Sbjct: 357 RIEEGISLRLKRVRYDSG 374 >gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291] Length = 505 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 145/374 (38%), Positives = 216/374 (57%), Gaps = 16/374 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++V A+ + G IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 12 FAQLGVRDEIVRALDEKGIQHSFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYN------LTVALLIGGIPFE 113 + G RA PR L++ PTREL QV D+ K+ L+V + GG P+E Sbjct: 72 ITAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYE 131 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I Sbjct: 132 PQIDALRAGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE---TIEHCFVATYAQYSK 230 +P RQ++LFSATM D + ++ F+ P I P S A T+++ + A Sbjct: 192 IPDDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVY---RAHALD 248 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K L+ ++LQ++ +IF K+ + L ++GF V A+HG++ Q +R K L Sbjct: 249 KVELVSRVLQAESRGAT-MIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKA 307 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 F+ G I ++VA+D+AARG+DI DV HV N+ +P + Y+HRIGRTGRAG+ G A TLV Sbjct: 308 FRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVD 367 Query: 351 KEDIKHIDAIEKLI 364 +++ I+K + Sbjct: 368 WDELARWALIDKAL 381 >gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46] gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46] Length = 454 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 217/368 (58%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG++ ++ A+ D G + IQ T+PL L D+ G A+TG GKT F +P++ Sbjct: 9 FVELGVAAEICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLGFGVPLIDR 68 Query: 63 LEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + AR+ P R +I+ PTREL QV ++ + + NL V + GG P+E Q ++ Sbjct: 69 VFDD-ARIPEPDGTARAIIIVPTRELCVQVGEDLARAAHSTNLRVCTIYGGRPYEEQIEQ 127 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RG D+++ TPGR++D + R L ++ ++ILV+DEAD MLD+GF+P I+ I + VP R Sbjct: 128 LDRGVDIIVGTPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDIEKILAAVPDER 187 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQ 237 QT+LFSATM + ++ F+ P I + A E + + K +++ + Sbjct: 188 QTMLFSATMPGPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVFQSHQMDKVSVIAR 247 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +LQ+ + IIF K+ ++ L ++GF V A+HG++ Q +R + L+ F+ G + Sbjct: 248 ILQANGRGRT-IIFARTKRGAASVAEQLGERGFLVTAVHGDMGQPARERSLTAFRNGDVD 306 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI DV HV N VP+ Y+HRIGRTGRAG G A TLV ++ Sbjct: 307 VLVATDVAARGIDIDDVTHVINHQVPDDEMTYVHRIGRTGRAGHSGVAVTLVGWDETTKW 366 Query: 358 DAIEKLIE 365 AI ++ Sbjct: 367 KAISDALD 374 >gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii PYR-1] Length = 494 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 215/370 (58%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LG+ ++V A+ + G IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 12 FAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHR 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNF---EKY---GKNYNLTVALLIGGIPFEA 114 + R +PR LI+ PTREL QV ++ KY + LTV + GG P+E Sbjct: 72 ITTDTERPLTGIPRALIVVPTRELCIQVYEDLVGASKYLMADETRKLTVTAIYGGRPYEP 131 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L++G DV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I + Sbjct: 132 QIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILKQI 191 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ +LFSATM D + ++ F+ P I P S+A A A K + Sbjct: 192 PAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEAPHSSATHDSTEQFAYRAHALDKVEM 251 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ +IF K+ + L ++GF V A+HG++ Q +R K L +F+ G Sbjct: 252 VARILQAEGRGAT-MIFTRTKRTAQKVADELGERGFKVGAVHGDLGQAAREKALKSFRTG 310 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+DI D+ HV NF +P + Y+HRIGRTGRAG+ G A TLV +++ Sbjct: 311 EVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDEL 370 Query: 355 KHIDAIEKLI 364 I+K + Sbjct: 371 PRWSMIDKAL 380 >gi|73997167|ref|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 isoform 1 [Canis familiaris] Length = 456 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238 LFSATMT ++QK+ L+NP + V++ T E ++ + F+ + + + +L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 261 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + +IFC+ N L GF+ +HG + Q R+ L+ FK + Sbjct: 262 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 376 Query: 359 AIEKLIEKKV 368 IE LI KK+ Sbjct: 377 RIEHLIGKKL 386 >gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus] gi|109825481|sp|Q29S22|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName: Full=DEAD box protein 47 gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus] gi|296487253|gb|DAA29366.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus] Length = 457 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 28 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 86 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 87 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 143 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 144 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 203 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238 LFSATMT ++QK+ L+NP + V++ T E ++ + F+ + + + +L +L Sbjct: 204 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNEL 263 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + +IFC+ N L GF+ +HG + Q R+ L+ FK + Sbjct: 264 AGN-----SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 318 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ Sbjct: 319 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ 378 Query: 359 AIEKLIEKKV 368 IE LI KK+ Sbjct: 379 RIEHLIGKKL 388 >gi|282879073|ref|ZP_06287833.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC 35310] gi|281298807|gb|EFA91216.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC 35310] Length = 644 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 231/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+V P P+Q + IP +L ++DV +AQTGTGKTA++ LP+L Sbjct: 21 FEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLPLLQ 80 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + +IL PTREL Q+AD+ + + K NL V + GG Q L+ Sbjct: 81 KID---VDSKHTQAIILSPTRELCLQIADDLKDFAKYIKNLHVEPVYGGASIVTQIHALK 137 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR++D NRG ++++ +V+DEAD ML+MGF I I + VP R T Sbjct: 138 HGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAGVPDDRNT 197 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM++E++K+++ +L++ K I V + + AE + H + A+ K L++++ Sbjct: 198 LLFSATMSNEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYMVNAR--DKYLALKRIVD 255 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K + L K G++ A+HG++ Q+ R + F++ QL+V Sbjct: 256 YYPRI-FAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVTQLLV 314 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ ENY HR GRTGRAG+ G + ++ + + A+ Sbjct: 315 ATDVAARGLDVDDLTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSKVRAV 374 Query: 361 EKLIEKKVDWLNGDLSS 377 EK+I K ++++G L + Sbjct: 375 EKIIGK--EFVDGTLPT 389 >gi|184159623|ref|YP_001847962.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii ACICU] gi|332876108|ref|ZP_08443892.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059] gi|183211217|gb|ACC58615.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU] gi|332735726|gb|EGJ66769.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059] Length = 615 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 228/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 65 LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + P+RI + T ST I T + K Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHK 241 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L + +T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 242 KKLLTHWL-ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E +E +++ Sbjct: 361 RERGKIRALEDYLEARLN 378 >gi|317127874|ref|YP_004094156.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522] gi|315472822|gb|ADU29425.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 481 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 140/363 (38%), Positives = 219/363 (60%), Gaps = 8/363 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++ A+ Y KPT +Q + IPL + + D+ +QTG+GKTA+F +P I Sbjct: 6 FDEYQLSEEIHRAITLMKYEKPTEVQREVIPLAMNKEDLVVKSQTGSGKTAAFGIP---I 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121 E R P+ LIL PTRELA QV ++ G+ + L AL + G PF Q ++L++ Sbjct: 63 CEMMNWEERKPQALILTPTRELAVQVREDIANIGR-FKLIKALAVYGKEPFAKQKEELKQ 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGR+LDH R L ++ I+ L++DEAD ML+MGFI ++ I +P R T+ Sbjct: 122 RNHVVVGTPGRMLDHIERETLALDEIKYLILDEADEMLNMGFINDVEEIMKALPADRVTM 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +FSAT+ +++ + +++NP+ IE+ + T +IEH + + K ALL+ + Sbjct: 182 VFSATLPKDVEDLCHKYMENPQHIEIASSGITTASIEHHLMEVNPK--GKLALLKDITVV 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + IIFCN K++V + LE+ +S +HG ++Q R ++ FK G + +VA Sbjct: 240 ENP-DSCIIFCNTKEHVDTVFSELERANYSCEKLHGGLEQEDRFSVMDGFKRGNFRYLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ +V V N+DVP E Y+HR GRTGR+G G+A T V D K++ AIE Sbjct: 299 TDVAARGIDVDNVTLVINYDVPMEKEGYVHRTGRTGRSGNKGRAITFVTPNDGKYLKAIE 358 Query: 362 KLI 364 K I Sbjct: 359 KYI 361 >gi|161510959|ref|YP_089142.2| ATP-dependent RNA helicase SrmB [Mannheimia succiniciproducens MBEL55E] Length = 445 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/438 (34%), Positives = 232/438 (52%), Gaps = 19/438 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D LSP+++ A+ GY +PT IQ + IP + DV G A TGTGKTA+F+LP + Sbjct: 6 FEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA E+ + L++A + GG+ ++ + + Sbjct: 66 LLDYPRRKPGAPRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQNHGEIFNK 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + +EIL+ DEADRML MGF + I++ + +QT Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTF 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +I+ + I + + Y K LL + + Sbjct: 186 LFSATLEGELLVDFAERILTDPVKIDAEPSRRERKKINQWYYHADS-YEHKVKLLARFIA 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K GI+F ++++V L L K+G + G + Q R + K G + L+V Sbjct: 245 DEQVSK-GIVFVRRREDVRELSEILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTLLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI D+ HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K++ I Sbjct: 304 ATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAGKKGTAVSFVEGHDYKYLGKI 363 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 ++ E+ L K I + R P + +++K Y QK Sbjct: 364 KRYTEE---------------LLKPRIIEGLEPRTKAPKDGEIKTVSKKQKAYIRQKREE 408 Query: 421 PLKESEKISKLQQDIQEN 438 K ++K +KL++ +N Sbjct: 409 KRKTTQKKAKLRRQDTKN 426 >gi|146311795|ref|YP_001176869.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638] gi|145318671|gb|ABP60818.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638] Length = 457 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 217/355 (61%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY+ TP+Q +P +L+ DV A+TG+GKTA+F L +L ++ G + ++L+L Sbjct: 22 GYLAMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQQIDAG---LFQTQSLVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHPPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 +G + ++ ++ LV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 QNP IE+++ + +IE F T + K LLQ+LL SQ + ++FCN KK+ Sbjct: 199 QQNPATIEIDSVDAL-PSIEQQFYETSQK--GKIPLLQKLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +LE+ G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCEALEEAGQSALALHGDLEQRDRDQTLIRFANGSARVLVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 NF++ E ++HRIGRT RAG G A +L A E+ + + + ++++ K++W++ Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISLCAPEEAQRANILSEMLQLKLNWMSA 369 >gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75] Length = 491 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa] gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa] Length = 807 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/356 (39%), Positives = 219/356 (61%), Gaps = 4/356 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D G SP+++ A+ GY KPTPIQ + +P+VL D+ G+A+TG+GKTA+FVLPM+ Sbjct: 227 FEDCGFSPQLMNAIAKQGYEKPTPIQCQALPIVLSGSDIIGMAKTGSGKTAAFVLPMIVH 286 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P ++ PTRELA Q+ +K+ K++ + V+ + GG+ Q K+L+ Sbjct: 287 IMDQPELEKEEGPIGVVCAPTRELAHQIYLETKKFSKSHGIRVSAVYGGMSKLDQFKELK 346 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++I TPGR++D L M+ LV+DEADRM D+GF P I++I + RQT Sbjct: 347 AGCEIVIATPGRLIDMLKMKALNMSRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++K++ L +P R+ V E I + K L+++L Sbjct: 407 LLFSATMPRKIEKLAREILTDPVRVTVGEVGRANEDITQVVQVIPSDAEKLPWLIEKLPG 466 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F ++K V ++ L ++ F V A+HG+ DQ SRM+IL FK G ++V Sbjct: 467 MIDE-GDVLVFASKKATVDDIESQLAQKAFKVAALHGDKDQASRMEILQKFKSGVYHVLV 525 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 A+D+AARGLDI + V NFD+ + ++HRIGRTGRAG + G A+TL+ +++ + Sbjct: 526 ATDVAARGLDIKSIKSVVNFDIAREMDVHVHRIGRTGRAGDKDGIAYTLITQKEAR 581 >gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct] gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct] Length = 455 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 221/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGPGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 379 EHLIGKKL 386 >gi|115375095|ref|ZP_01462364.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca DW4/3-1] gi|310825404|ref|YP_003957762.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1] gi|115367933|gb|EAU66899.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca DW4/3-1] gi|309398476|gb|ADO75935.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1] Length = 421 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 229/412 (55%), Gaps = 11/412 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGLSP + A+ A + +PTPIQ + IP L DV G A TGTGKTA++VLP++ Sbjct: 5 FAQLGLSPTSLDALGRARFTQPTPIQARAIPPALAGKDVVGCAATGTGKTAAYVLPLVER 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + L+L PTREL Q+++ + + + LT +++GG AQ + L+ Sbjct: 65 FSGRKGLL----GLVLAPTRELVQQISEPVRLFAEPHGLTHTVVVGGEDMAAQVEALKER 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 L+ TPGR++D + +E LV+DEADRMLDMGF I+ I +P RQTLL Sbjct: 121 PTFLLATPGRLVDLMASQAVTFPQLEALVLDEADRMLDMGFQFQIETILKALPRRRQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++ + + + L P R+EV + AE E + A+ +K ALL L++ Sbjct: 181 FSATLGPDVTRFARDRLYQPVRVEVTRSGTPAERAEQRLYSVKAE--EKSALLLTLMRKN 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + +IF K+ + +L++ G+ +H + Q R + L F++GT + +VA+ Sbjct: 239 E--GTALIFTRTKERADKVHKALQRAGYPCDVLHADRTQSQRKQALDAFRQGTCRCLVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ DVGHV N+D+P+ E+Y+HRIGRT RA G A T +D + IE Sbjct: 297 DIAARGLDVEDVGHVINYDLPHAPEDYVHRIGRTARAQASGVATTFATPKDAPTLARIES 356 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 ++ KV L P+ + + +H A+K+ PQK G +R + + Sbjct: 357 IMRTKVPRLP---VPREDPVFQEEWQRHLAAQKDPGPPQKDHGVSKRTPDQA 405 >gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1 [Apis mellifera] Length = 452 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 221/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLG+ + A D + PT IQ + IPL L+ D+ G+A+TG+GKTA+F LP+L Sbjct: 18 ITWKDLGIVDVLCKACEDLKWKSPTKIQYEAIPLALEGKDIIGLAETGSGKTAAFALPIL 77 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R LIL PTRELA Q+++ FE G + + A+++GG+ +Q L Sbjct: 78 QALLENPQRYF---ALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILA 134 Query: 121 RGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + +LI TPGR++DH K + +++ LV+DEADR+L+M F + I ++P R+ Sbjct: 135 KKPHILIATPGRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERK 194 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATMT ++QK+ L+NP ++EV+T T E ++ ++ ++ K L +L Sbjct: 195 TLLFSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKF--KDVYLVHIL 252 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC N V L GF+ +HG + Q R+ L+ FK ++ Sbjct: 253 -NELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSIL 311 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR G++ T V + D++ Sbjct: 312 ISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 371 Query: 360 IEKLIEKKV 368 IE+LI K++ Sbjct: 372 IEQLISKQL 380 >gi|255036621|ref|YP_003087242.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254949377|gb|ACT94077.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM 18053] Length = 385 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/372 (38%), Positives = 225/372 (60%), Gaps = 7/372 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS ++ + + Y +P PIQ IP +L+ +DV GIA+TG+GKTASFVLP+L Sbjct: 8 FQSLGLSEPLLKTIAEQNYTQPYPIQQAAIPAILKGNDVLGIAKTGSGKTASFVLPILES 67 Query: 63 LEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKL 119 +K A+ R L+L PTRELA Q+ F+ + + V L GG+ Q L Sbjct: 68 FQKMPPAKNRHITALVLVPTRELAVQIGSVFQIFSERLPRKVKTLAVFGGVSINPQMIAL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++L+ TPGR+L+ + L + ILV+DEAD+ML+MGF +++I L+P RQ Sbjct: 128 Q-NVEILVATPGRLLELLSYKALSLAETRILVLDEADKMLNMGFADEMRDIFFLLPKKRQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 ++LFSAT+ DE+ K++++ L++P RIE+ + I+ + +K LL+ L+ Sbjct: 187 SILFSATLGDEVDKINKDQLKSPVRIEIEEEEQNLDLIKQT--GYFVDPDRKGPLLRYLI 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +SQ MK ++F + + NL L+K G A+H Q +R + L+ FK G + ++ Sbjct: 245 KSQQ-MKQVLVFVSATRTADNLVEKLKKNGIDAMAMHSKKSQGARTEALNKFKSGKLTVL 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+DLA+RG+DI + +V NF++P ++Y+HRIGRTGRA G+A +L+ ED+ H Sbjct: 304 VATDLASRGIDIQFLPYVINFELPRSPKDYVHRIGRTGRAENPGEAISLICPEDVHHFKI 363 Query: 360 IEKLIEKKVDWL 371 I+K + KKV+ + Sbjct: 364 IQKKMGKKVEMM 375 >gi|255530578|ref|YP_003090950.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343562|gb|ACU02888.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM 2366] Length = 625 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 230/367 (62%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F+ LG+S VV AV D G+ PTPIQ ++IP++L+ +D G+AQTGTGKTA+F LP+L Sbjct: 5 FSKLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLPLLE 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +++ + P+ LIL PTREL Q+ + + + KN + V + GG Q +++ Sbjct: 65 LID---FKSNKPQALILCPTRELCLQITSDIKNFSKNTSGANVVAVYGGANIMQQLREIR 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR+LD R + N++ +V+DEAD ML+MGF I +I S P ++T Sbjct: 122 NGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E++++++N++ +P + + T ++ IEH + A+ K A L++++ Sbjct: 182 WLFSATMPPEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYIVRAR--DKYAALKRIVD 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++FC K + ++ L K G++ A+HG++ Q+ R K++ F++ +QL++ Sbjct: 240 FNPEIF-AVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRNMQLLI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N+ +P+ E+Y HR GRTGRAG+ G + +V ++I I I Sbjct: 299 ATDVAARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKEIGKIRQI 358 Query: 361 EKLIEKK 367 E++I K+ Sbjct: 359 ERIIGKQ 365 >gi|283798617|ref|ZP_06347770.1| ATP-dependent RNA helicase [Clostridium sp. M62/1] gi|291073603|gb|EFE10967.1| ATP-dependent RNA helicase [Clostridium sp. M62/1] gi|295115719|emb|CBL36566.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium SM4/1] Length = 553 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 220/369 (59%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L K++ AV D G+ +PIQ K IPL L+ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 EK + + + ++L PTRELA QVA+ K + + V + GG Q + L+ Sbjct: 64 -EKIDPKNKKLQAVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKD 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH R + + +V+DEAD ML+MGF+ ++ I S +P RQT+ Sbjct: 123 GVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 +FSATM + ++++ F ++P+ ++V T + + V + C LL Sbjct: 183 MFSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLLDMY- 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 K ++FCN KK V L +L+ +G+ +HG++ Q R ++++ F++G ++ Sbjct: 242 ----APKLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR GKAF+LV +++ + Sbjct: 298 VATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRD 357 Query: 360 IEKLIEKKV 368 I++ + K+ Sbjct: 358 IQRYCKTKI 366 >gi|295090645|emb|CBK76752.1| Superfamily II DNA and RNA helicases [Clostridium cf. saccharolyticum K10] Length = 553 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 220/369 (59%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L K++ AV D G+ +PIQ K IPL L+ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 EK + + + ++L PTRELA QVA+ K + + V + GG Q + L+ Sbjct: 64 -EKIDPKNKKLQAVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKD 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V+I TPGR++DH R + + +V+DEAD ML+MGF+ ++ I S +P RQT+ Sbjct: 123 GVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 +FSATM + ++++ F ++P+ ++V T + + V + C LL Sbjct: 183 MFSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLLDMY- 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 K ++FCN KK V L +L+ +G+ +HG++ Q R ++++ F++G ++ Sbjct: 242 ----APKLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR GKAF+LV +++ + Sbjct: 298 VATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRD 357 Query: 360 IEKLIEKKV 368 I++ + K+ Sbjct: 358 IQRYCKTKI 366 >gi|302344868|ref|YP_003813221.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica ATCC 25845] gi|302149937|gb|ADK96199.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica ATCC 25845] Length = 640 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 230/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+ P P+Q + IP +L R+DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + ++L PTREL Q+AD+ +++ K +L +A + GG + Q ++L Sbjct: 64 RID---TSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASIDTQIRQLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D +RGK ++ + +V+DEAD ML+MGF I I + VP R T Sbjct: 121 HGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTGVPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+++V++ +L + K I V + + AE++ H + A+ K L++L+ Sbjct: 181 LLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAR--DKYLALKRLVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+FC K + L K G++ A+HG++ Q+ R + F+ Q++V Sbjct: 239 FYPKI-YAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ ENY HR GRTGRAG+ G + +++ + + I Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 E+ I K D+++G L S Sbjct: 358 EREISK--DFVDGTLPS 372 >gi|163748720|ref|ZP_02155973.1| ATP-dependent RNA helicase [Shewanella benthica KT99] gi|161331830|gb|EDQ02634.1| ATP-dependent RNA helicase [Shewanella benthica KT99] Length = 438 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/407 (36%), Positives = 243/407 (59%), Gaps = 17/407 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FAD L + A+ ++G+ TPIQ ++P++LQ+ D+ G AQTGTGKT +F++ Sbjct: 11 FADFSLHEGIKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFEH 70 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + +GR ++ PR +I+ PTRELA Q+A + K+ L V ++ GG +E Q K Sbjct: 71 LLSSPIPEGR-QLNQPRAMIMAPTRELAIQIARDATLLAKHTGLKVGIVYGGESYEVQRK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G D+LI T GRI+D+ +G + ++ I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLDKGIDILIGTTGRIIDYVRQGIINLSAIQVVVLDEADRMFDLGFIKDIRFLFRRMPDA 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 R +LFSAT++ ++Q+++ + + P+++ + T++ I E F Y +K L Sbjct: 190 KLRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIF---YPSMDEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ +D + IIF N K + N+ L G V + G++ Q+ R++IL F G Sbjct: 247 LLSLIE-EDWPEKAIIFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + +VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGR G+ G + + +E Sbjct: 306 ELDFLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRVGKKGVSISFACEEYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 ++ AIE+ I + N D ++L LE I H RK+N PQ Sbjct: 366 MNLPAIEEFIAHSIPVSNYDNTAL---LEDIPAPIRVH-RKHNSRPQ 408 >gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130] gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130] Length = 455 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/379 (39%), Positives = 216/379 (56%), Gaps = 18/379 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL ++ A+ GY PT IQ +++P L+ D+ G+A+TG+GKTA+F LP+L Sbjct: 21 FKSLGLIDPLLEALEQVGYKSPTEIQSESLPHALEGRDIIGVAETGSGKTAAFALPILQK 80 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + P+ L +L PTRELA Q++ FE G A+++GG+ Q L Sbjct: 81 LWEE------PKGLFACVLAPTRELAYQISQQFEALGAAMGARCAVIVGGMDLPTQAIAL 134 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + V++ TPGR+L H K + ++ LV+DEADR+LDM F P I I L+P R Sbjct: 135 AKRPHVVVATPGRLLQHLEETKGFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLIPKER 194 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATMT ++ K+ L NP R+EV+ T T+ ++ K +L L Sbjct: 195 TTYLFSATMTSKVAKLQRASLVNPVRVEVSGKYQTVSTLLQHYL--LVPLKDKVVMLIYL 252 Query: 239 LQS--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 S Q+++ IIF ++ L L GF +HG + Q R+ L FK G Sbjct: 253 ANSLAQNSI---IIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGR 309 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR GKA TLV + D++ Sbjct: 310 KILVATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQYDVEL 369 Query: 357 IDAIEKLIEKKVD-WLNGD 374 + IEK+I KK+D W D Sbjct: 370 LQRIEKVIGKKMDAWPTDD 388 >gi|192360552|ref|YP_001981465.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107] gi|190686717|gb|ACE84395.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107] Length = 439 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 220/374 (58%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LSP+++ A+ D G+ +PIQ +++P LQ DV G AQTGTGKTA+F+ ++ Sbjct: 22 FHDFDLSPELMHAIADVGFKYCSPIQAQSLPHALQGKDVVGKAQTGTGKTAAFLAAIIDD 81 Query: 63 LEKG----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K + R L++ PTREL Q+A++ + K +L + L+GG+ + Q ++ Sbjct: 82 LLKNPITEKRYAGEARALVIAPTRELVIQIAEDAKALCKYTDLKIHTLVGGMDYTKQQRR 141 Query: 119 L-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 L E D+L+ TPGR+LD + ++ +E+LVIDEADRMLDMGFIP ++ I P Sbjct: 142 LHETLVDILVATPGRLLDFCGNKDVYLDQLEVLVIDEADRMLDMGFIPQVRQIVRQTPHR 201 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCAL 234 RQTL FSAT TD++ + + + P IE+ S + A +H ++ + + K L Sbjct: 202 EDRQTLFFSATFTDDVHNLVQQWTYKPVTIEIEPESVANARVDQHVYLVSTEE---KYTL 258 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+Q Q+ ++ I+F N++ +L L + G + G I Q R+ L FK G Sbjct: 259 LYNLIQ-QEHAESMIVFANRRDECRDLYEKLLRHGIKAGLLSGEITQNKRVSTLDAFKNG 317 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+A RG+ I + HV NF +P E+Y+HRIGRTGRAG+ G + + ++D Sbjct: 318 DIKVLVATDVAGRGIHISGISHVVNFTLPEEPEDYVHRIGRTGRAGKSGTSISFACEDDA 377 Query: 355 KHIDAIEKLIEKKV 368 ++ IEKL+ K + Sbjct: 378 LRLEPIEKLLGKPI 391 >gi|288801723|ref|ZP_06407165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella melaninogenica D18] gi|288335765|gb|EFC74198.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella melaninogenica D18] Length = 640 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 230/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+ P P+Q + IP +L R+DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + ++L PTREL Q+AD+ +++ K +L +A + GG + Q ++L Sbjct: 64 RID---TSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASIDTQIRQLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D +RGK ++ + +V+DEAD ML+MGF I I + VP R T Sbjct: 121 HGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTGVPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E+++V++ +L + K I V + + AE++ H + A+ K L++L+ Sbjct: 181 LLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAR--DKYLALKRLVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+FC K + L K G++ A+HG++ Q+ R + F+ Q++V Sbjct: 239 FYPKI-YAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ ENY HR GRTGRAG+ G + +++ + + I Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 E+ I K D+++G L S Sbjct: 358 EREISK--DFVDGTLPS 372 >gi|323343824|ref|ZP_08084051.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis ATCC 33269] gi|323095643|gb|EFZ38217.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis ATCC 33269] Length = 626 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 225/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+ P P+Q + IP +L +DV +AQTGTGKTA++ +P+L Sbjct: 4 FEELGVSEEIRRAITELGFETPMPVQQEVIPYLLGNGNDVVALAQTGTGKTAAYGIPILQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + + + L+L PTREL Q+AD+ + K N L V + GG EAQ + ++ Sbjct: 64 KIDTSK---KETQALVLSPTRELCLQIADDLNDFSKYINGLHVVAVYGGTSIEAQIRTIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D +RG ++++ +V+DEAD ML+MGF I I +P R T Sbjct: 121 RGVQIIVATPGRLIDLMHRGVAKLDSVANVVLDEADEMLNMGFSESINEIFEGIPQDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++K+++N+L + K I V + + AE++ H + A+ K L++++ Sbjct: 181 LLFSATMSKEIEKIAQNYLHDAKEIVVGSRNEGAESVNHIYYMVNAK--DKYLALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K+ + L G++ A+HG++ Q+ R + F++ Q +V Sbjct: 239 YYPHI-FAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRQHMTQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + +++ + + AI Sbjct: 298 ATDVAARGLDVEDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERSKMRAI 357 Query: 361 EKLIEKK 367 EK+I K+ Sbjct: 358 EKVIGKQ 364 >gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231] gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231] Length = 437 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 225/384 (58%), Gaps = 11/384 (2%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-MLTILE 64 LGL ++ + +AG+ TP+Q +P++LQ HDV AQTGTGK+A+F+L M ++ Sbjct: 14 LGLHESLLLGIKEAGFSHCTPVQAAALPVLLQHHDVAAQAQTGTGKSAAFLLATMHYLMT 73 Query: 65 KGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGA 123 A + P LIL PTRELA Q+ + EK G + A + GGI +E Q +L +G Sbjct: 74 TPVAENKTGPWALILAPTRELALQIHRDAEKLGYFTGMRCAAIYGGIGYEPQRAELTQGV 133 Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQTL 181 D++I TPGRI+D + + ++NIE++V+DEADRM DMGFI ++ + +P R + Sbjct: 134 DIIIGTPGRIIDFYKQRVFSLDNIEVVVLDEADRMFDMGFITDVRYLLRRMPPAPDRINM 193 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+++ +++++ + P+ I + TAE + + + K LL +L+ Sbjct: 194 LFSATLSERVKELAYEHMNAPETIAIEPEQVTAEKVRQSLY--HVASADKIGLLLGVLRQ 251 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 QD + ++F N K++ + L GF I G+I Q+ R ++L F+EG + ++VA Sbjct: 252 QDATRT-LVFVNTKRDAERVTAYLVGNGFDAEVISGDIPQKKREQLLQRFQEGKLPMLVA 310 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGL IPDV + N+D+P AE+Y+HRIGRT RAG G A + + + + IE Sbjct: 311 TDVAARGLHIPDVSRIVNYDLPQNAEDYVHRIGRTARAGASGDAISFACEAYVYSLPEIE 370 Query: 362 KLIEKKV--DWLNGDL--SSLNPP 381 I +K+ + + L + +NPP Sbjct: 371 AYIHQKIPAEMASSQLIATDINPP 394 >gi|163754240|ref|ZP_02161363.1| possible ATP-dependent RNA helicase [Kordia algicida OT-1] gi|161326454|gb|EDP97780.1| possible ATP-dependent RNA helicase [Kordia algicida OT-1] Length = 450 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 152/411 (36%), Positives = 234/411 (56%), Gaps = 15/411 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS ++ A+ D G+ PTPIQ ++ ++ DV GIAQTGTGKT +++LP+L Sbjct: 4 FQDFDLSKQLHYAIEDLGFTTPTPIQEQSFSVIRGGKDVVGIAQTGTGKTFAYMLPLLRD 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L K +V PR L+L PTREL QV + E + K N+ + + GG+ Q + L++G Sbjct: 64 L-KFSKQVN-PRILVLVPTRELVIQVVEQIELFAKYINVRIVGVYGGVNMNTQAQSLQQG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 AD+++ TPGR+ D L + +I+ LVIDE D MLD+GF I NI L+P RQ ++ Sbjct: 122 ADIVVATPGRLYDLVLSRALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPEQRQNIM 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATMTD++ + ++F P +I + + + I A Y+ K LL LL+ + Sbjct: 182 FSATMTDDVNLLIDDFFIAPHKISIAVSGTPLDNISQTCYAVQNFYT-KVNLLTHLLKDK 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++F + K+ L L+K G V IH N Q R++ + NF G +++VA Sbjct: 241 EIYSKVLVFISNKRIADRLFDCLQKDFGEEVAVIHSNKTQNYRIRSIENFNTGENRILVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARGLD+ + HVFNF+ PN ENY+HRIGR GRA G A K+++++ +AIE Sbjct: 301 TDVMARGLDLDMITHVFNFNTPNYPENYMHRIGRAGRAKAKGNAVLFYTKKELEYKEAIE 360 Query: 362 KLIEKKVDWLNG----DLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408 KL+ ++ L ++S+ P E+ I + N+ P K+ G ++ Sbjct: 361 KLMNYEIPQLEFPEEVEISTQLAPEEQTRIREVNN-------PLKTEGLEK 404 >gi|189426069|ref|YP_001953246.1| ATP-dependent RNA helicase DbpA [Geobacter lovleyi SZ] gi|189422328|gb|ACD96726.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ] Length = 465 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 148/380 (38%), Positives = 225/380 (59%), Gaps = 12/380 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P ++ + GY TPIQ ++P +L D+ A+TG+GKTA+F + +L+ Sbjct: 6 FSSLHLKPAMLKNLASLGYAAMTPIQAHSLPPILASKDLIARAKTGSGKTAAFGIGLLSR 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ +++ L+L PTRELA QVA + + N+ V + GG+PF Q LE Sbjct: 66 LDTTALQLQ---ALVLCPTRELADQVAKELRRLARFTENIRVLTVCGGVPFGPQLGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR+LDH RG L +++++ LV+DEADRMLDMGF I+++ + P RQTL Sbjct: 123 GAHVVVGTPGRLLDHLRRGSLDLSSLQTLVLDEADRMLDMGFQDDIRSLIAAAPARRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQLLQ 240 LFSAT D + +S Q P + V+ A TIE F A Q S+ A + + Sbjct: 183 LFSATYPDSIADMSAAMQQTPVEVSVDE-DHVAGTIEQHFYAVEPDQRSEAVARILGRYR 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + T+ +FCN K + L L+++GF+ AIHG+++QR R ++L F + ++V Sbjct: 242 PESTL----VFCNTKLDCQELADDLKERGFAALAIHGDLEQRERDQVLVRFSNKSASVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ V NF++ E + HRIGRTGRAG G A +LV++ D + I + Sbjct: 298 ATDVAARGLDIKELAAVINFELSRNPEVHTHRIGRTGRAGEQGLAISLVSRRDSRLIKGM 357 Query: 361 EKLIEKKVDWLNGDLSSLNP 380 E+ + ++D + SSL P Sbjct: 358 EEDLACRIDL--QEFSSLAP 375 >gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis] gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis] Length = 448 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 223/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG++ + A G+ +PT IQI+ IP+ LQ D+ G+A+TG+GKT +F LP+L Sbjct: 21 FRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQT 80 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 81 LLESPQRLY---ALVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKK 137 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR++DH K + I+ LV+DEADR+L+M F + I ++P R+T Sbjct: 138 PHIVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 197 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT ++ K+ L++P + V++ T E ++ +V +++ K + L +L + Sbjct: 198 LFSATMTKKVHKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKF--KDSYLVYIL-N 254 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + +IFC+ N + L GF+ +HG + Q R+ L+ FK + +++A Sbjct: 255 ELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSILLA 314 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V++ D++ IE Sbjct: 315 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIE 374 Query: 362 KLIEKKV 368 LI KK+ Sbjct: 375 HLIGKKL 381 >gi|317180053|dbj|BAJ57839.1| ATP-dependent RNA helicase [Helicobacter pylori F32] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|297569193|ref|YP_003690537.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925108|gb|ADH85918.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 528 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 153/424 (36%), Positives = 244/424 (57%), Gaps = 18/424 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L +++ A+ +G+ TPIQ + +P L HD G AQTGTGK+A+F++ ++T Sbjct: 102 FHDLDLPQELMRAIHASGFQYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITR 161 Query: 63 LEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + V +P+ LIL PTRELA Q+ + E+ + L + GG +E Q K Sbjct: 162 LLREPDTVPRQLALPKALILAPTRELAIQIHRDAEELTQYSELNCVAVFGGTDYEKQRKM 221 Query: 119 LERG-ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175 E+ D+LI TPGR+LD F R K++ + + +LVIDEADR+LDMGFIP ++ I P Sbjct: 222 FEQAPVDLLIATPGRLLD-FARQKVVSLKEVRVLVIDEADRLLDMGFIPDVRRIIQQTPE 280 Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL FSAT+ ++ +S + ++P +E+ ++ +E A+ +K + Sbjct: 281 KSQRQTLFFSATLNSQIANLSAQWTKDPVTVEIEPEQVASDRVEQRVYMVTAK--EKMTV 338 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ + ++ I+FCN++ + L + G S + G + Q+ RMK L NFKEG Sbjct: 339 LYNLITGKQ-LERVIVFCNRRDVTRRVRERLYRHGISCAMLSGEVSQQQRMKTLDNFKEG 397 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+A RGL I + HV N+++P AE+Y+HRIGRTGRAG G + + +E+ Sbjct: 398 KIRVLVATDVAGRGLHIEGISHVINYNLPEDAEDYVHRIGRTGRAGASGISVSFADEEES 457 Query: 355 KHIDAIEKLIEKKVDWLNGD---LSSLNPPLEK---IDIAQHNHARKNNPIPQKSTGFDR 408 ++ AIE+ + +K+D + + L L PP++K +D + + P + +G R Sbjct: 458 FYLPAIEEYMGRKLDCVYPEDELLIPLPPPVQKAPPVDKNLSGNQGGRSGKPGRKSGPPR 517 Query: 409 RKKN 412 R N Sbjct: 518 RSSN 521 >gi|321313476|ref|YP_004205763.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5] gi|320019750|gb|ADV94736.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5] Length = 479 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 214/362 (59%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + +S ++ A+ GY +PT +Q IP L+R D+ +QTG+GKTASF +P+ + Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + P+ LIL PTRELA QV ++ G+ + + G F+ Q +L++ Sbjct: 64 ANWDENK---PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 + +++ TPGR+LDH +G L ++ + LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 121 SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++K+S ++Q P+ IE+ T IEH + + K +LL+ +L ++ Sbjct: 181 FSATLPQDIEKLSRQYMQKPEHIEIKAAGLTTRNIEHAVIQVREE--NKFSLLKDVLMTE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC K++V L L+ G+ IHG + Q R +++ FK G + +VA+ Sbjct: 239 NP-DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ V N+D+P E+Y+HR GRTGRAG GKA + V + + + IE+ Sbjct: 298 DVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357 Query: 363 LI 364 I Sbjct: 358 YI 359 >gi|212633329|ref|YP_002309854.1| ATP-dependent RNA helicase RhlB [Shewanella piezotolerans WP3] gi|226739551|sp|B8CHZ1|RHLB_SHEPW RecName: Full=ATP-dependent RNA helicase rhlB gi|212554813|gb|ACJ27267.1| Helicase, DEAD box [Shewanella piezotolerans WP3] Length = 437 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 233/383 (60%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L +V A+ + G+ TPIQ ++P++L + D+ G AQTGTGKT +F++ Sbjct: 11 FADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKTLAFLVATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT ++ PR +I+ PTRELA Q+A + K+ L V ++ GG +EAQ K Sbjct: 71 LLTEAAPTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEAQRKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L++G D+LI T GRI+D+ +G + ++ I+ +V+DEADRM D+GFI I+ + +P Sbjct: 131 LDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 +R +LFSAT++ ++Q+++ + + P+++E+ T++ I E F Y +K LL Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIF---YPSMEEKMPLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL+ +D + I+F N K + + LE G V + G++ Q+ R++IL F G Sbjct: 248 LSLLE-EDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILEQFTSGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG+ G + + +E Sbjct: 307 IDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYAL 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE I+ + + D +L Sbjct: 367 NLPAIESYIQHSIPVTSYDSEAL 389 >gi|15644875|ref|NP_207045.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 26695] gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter pylori 26695] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289] gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289] Length = 572 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 227/377 (60%), Gaps = 12/377 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ V+ A+ D + + TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 + L G +I+ PTRELA Q+ + + Y L VA+ G G ++ Sbjct: 61 SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFA--YYLDGVSCVAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + K L GADV+I TPGR + H + G + ++ + ++DEADRMLDMGF I I + Sbjct: 119 ELKSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P + QT++FSATM +++++++ L+NP I++ S AE I Y ++K + Sbjct: 179 PASCQTIMFSATMPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYE--TQKMGI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ + ++ D +K IIF K+ V + SL ++ + +H ++DQ R ++ FK G Sbjct: 236 IKDIFKAGD-LKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+ ARG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R GKA T V +DI Sbjct: 295 QIDVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNVDDI 354 Query: 355 KHIDAIEKLIEKKVDWL 371 + IE ++K+V+ + Sbjct: 355 YYFKQIESFLDKEVEKI 371 >gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter pylori B38] gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter pylori B38] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|260549866|ref|ZP_05824082.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Acinetobacter sp. RUH2624] gi|260407116|gb|EEX00593.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Acinetobacter sp. RUH2624] Length = 486 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 227/377 (60%), Gaps = 15/377 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 28 FAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNN 87 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L++ PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 88 LAGQETFVPFKERMKA-VTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 146 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR ++ ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 147 FAKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAIS 205 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L +QTL+FSAT D + +++ +++P RI + T ST I T KK Sbjct: 206 ELAANRKQTLMFSATFADRIIRLAACMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKK 265 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L L S + + ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 266 KLLTHWL--SDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 323 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 324 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 383 Query: 352 EDIKHIDAIEKLIEKKV 368 + I A+E+ +E ++ Sbjct: 384 RERGKIRALEEYLEARL 400 >gi|261839104|gb|ACX98869.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 52] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 477 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 217/371 (58%), Gaps = 15/371 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P+++ A+ + KPTPIQ + IP L+ DV G+A TG+GKTA+F +P+L Sbjct: 67 FTELKLIPELLEAIQSMKFTKPTPIQAEAIPHALEGKDVIGLAVTGSGKTAAFAIPILQS 126 Query: 63 LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + +P L+L PTRELA Q+ D F+ G L ++GG+ Q + L R Sbjct: 127 LWHDQ----LPYYCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMR 182 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGRI+DH K + N++ LV+DEADR+LD+ F P + I ++P R T Sbjct: 183 KPHVIVATPGRIVDHLEHTKGFSLKNLKYLVMDEADRLLDLDFGPELDKILRVIPRERNT 242 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT++++K+ L NP RI V++ TA+ + + Y K L LL Sbjct: 243 YLFSATMTNKIEKLQRASLNNPVRIAVSSKYQTADNLVQSMMLVSDGY--KNTYLVHLL- 299 Query: 241 SQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ K+ IIF C + L L GFS +HG + Q R+ L+ FK G Sbjct: 300 NEFVGKSIIIFTRTCAHSQRTALLARIL---GFSAVPLHGQLSQSQRLGSLNKFKSGKAN 356 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V N+D+P ++ YIHR+GRT RAGR GK+ +LV + D++ Sbjct: 357 ILVATDVAARGLDIPAVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLVTQYDLEMY 416 Query: 358 DAIEKLIEKKV 368 IE +++KK+ Sbjct: 417 LRIEAVLQKKL 427 >gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 443 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 219/375 (58%), Gaps = 14/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA+LG+ ++V A+ + G +P IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 10 LTFANLGVRDEIVRALAEKGIERPFAIQELTLPLALAGDDLIGQARTGMGKTLAFGVPLL 69 Query: 61 TILEKG---RARVRMPRTLILEPTRELAAQV------ADNFEKYGKNYNLTVALLIGGIP 111 + G RA PR L++ PTREL QV A + K + L+V + GG P Sbjct: 70 NRITAGVGVRALNGTPRALVVVPTRELCLQVHGDLSDAAKYLKAEGDRPLSVVSIYGGRP 129 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 +E Q + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I Sbjct: 130 YEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERIL 189 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQYS 229 +P RQ++LFSATM + ++ F+ P I P S A +T E +A Sbjct: 190 RQIPEERQSMLFSATMPGPIITLARTFMNQPTHIRAEAPHSAATHDTTEQFVYRAHAL-- 247 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K ++ ++LQ++ +IF K+ + L ++GF V A+HG++ Q +R K L Sbjct: 248 DKVEMVSRILQAEGRGAT-MIFTRTKRTAQKVADELAERGFKVGAVHGDLGQIAREKALK 306 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 F+ G I ++VA+D+AARG+DI D+ HV N+ +P + Y+HRIGRTGRAG+ G A TLV Sbjct: 307 AFRNGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTLV 366 Query: 350 AKEDIKHIDAIEKLI 364 +++ I+K + Sbjct: 367 DWDELPRWSMIDKAL 381 >gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis DSM 9187] gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 642 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 216/368 (58%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL+ ++ AV GY P+PIQ IP +L+ D+ G AQTGTGKT +F LP+L+ Sbjct: 10 FSELGLAAPILKAVAAVGYEDPSPIQAAAIPPLLEGRDLLGQAQTGTGKTGAFALPILSR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L + ++ LIL PTRELA QVA+ + Y + + V + GG +++Q + L R Sbjct: 70 LNLTQMDTQV---LILAPTRELAIQVAEACQSYAQFIPDFHVLPIYGGSSYDSQLRALRR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++D RGKL ++ ++ LV+DEAD ML MGFI ++ + P RQ Sbjct: 127 GAQVVVGTPGRVMDMMRRGKLDLSALKTLVLDEADEMLRMGFIDDVEWVIEQCPLDRQIA 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++++++ L+ P I++ + +STA I + + ++ Sbjct: 187 LFSATMPEQIRRIAHRHLKTPVEIKIASKTSTAANIRQRYWLVSGLHKLDAMTRMLEVEQ 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + ++F K L L +G S A+HG+I Q+ R + + K G I +++A Sbjct: 247 YDAL---LVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDILIA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + HV N+D+P E+Y+HRIGRTGRAGR G A VA + + + IE Sbjct: 304 TDVAARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLRMIE 363 Query: 362 KLIEKKVD 369 + + ++ Sbjct: 364 QATRQPIE 371 >gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 529 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 219/368 (59%), Gaps = 2/368 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + A+ GYV+ TPIQ K+IP ++ +D+ G+AQTGTGKT +F+LP L Sbjct: 1 MKFNELPFHESLSKALDKIGYVELTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L +P L+L PTREL Q+A+ +K + +L VA +IGG +++Q + L Sbjct: 61 HRLLSAEEEEALPYALVLAPTRELTIQIAEEAKKLLEFTDLGVATIIGGTDYKSQEQALG 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 A +++ TPGR++D L + NI+++++DEADRM DMGF+ ++ I +Q+ Sbjct: 121 NKACIIVATPGRLIDFVKNHGLSLENIKVVILDEADRMFDMGFVQDLKYIFHKCKNRKQS 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT++ E+ +++ +L +P + +N E I+ + + +K L L Sbjct: 181 LLFSATLSYEVVRLASKYLNDPIEVHINPEKVITERIDQSLL--HLGREEKLPYLVNSLL 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIF N K N+ + +L + G + + +DQ+ R+++L +FK G + ++ Sbjct: 239 NYPIEGLGIIFTNYKMNIPKIVSALRRFGITATGLSSELDQKKRIRLLRDFKAGKYKYLI 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RG+DI ++ V+N+D+P AENY+HRIGRT RAGR G++ ++ D ++ I Sbjct: 299 ATDVASRGIDIENIDVVYNYDLPQDAENYVHRIGRTARAGRKGQSIGFCSETDYTELERI 358 Query: 361 EKLIEKKV 368 EK + K+ Sbjct: 359 EKYLNSKI 366 >gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1] gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128] gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8] gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1] gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128] gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|225427683|ref|XP_002273691.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 797 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 207/373 (55%), Gaps = 25/373 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + LS +++ AV AGY P+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPMLT Sbjct: 294 WVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 353 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ D K+ + V ++GG E Q Sbjct: 354 ISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGF 413 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 ++ +G +V+I TPGR++D R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 414 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 473 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T + I Sbjct: 474 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQH 533 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + + S+K LQ+LL K I+F N KK+ NL L+K G+ V +HG Sbjct: 534 VIMM--KESEKMFKLQKLLDELGD-KTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKS 590 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+A RG+DIPDV HV N+D+P E Y HRIGRTGRAG Sbjct: 591 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 650 Query: 341 RHGKAFTLVAKED 353 + G A T + D Sbjct: 651 KTGVATTFLTLHD 663 >gi|295702900|ref|YP_003595975.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] gi|294800559|gb|ADF37625.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] Length = 481 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 142/399 (35%), Positives = 231/399 (57%), Gaps = 12/399 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ GLS KV A+ Y PT +Q K +P+ L+ DV +QTG+GKTASF +P+ + Sbjct: 6 FSQYGLSDKVAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + P+ L+L PTRELAAQV ++ G+ + A + G PF Q +L++ Sbjct: 66 VNWEENK---PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH + L + I LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVVGTPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++++S +++ P +E+ T TI+H ++ + +K LL+ + + Sbjct: 183 FSATLPEDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVISVGNE--RKFELLKDVTTVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC ++ V L L+ G+ IHG + Q R +++++FK+G + +VA+ Sbjct: 241 NP-DSCIIFCRTQEQVNTLLDDLDDLGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+D+P E+Y+HR GRTGRAG+ GKA T V + + + IE+ Sbjct: 300 DVAARGIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEERMLSEIEE 359 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 I + +S P E++ A+ K N P+ Sbjct: 360 YIGFSIP------TSTPPSKEEVQQAESAFTDKINERPE 392 >gi|262170498|ref|ZP_06038176.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451] gi|261891574|gb|EEY37560.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451] Length = 460 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ +N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPASIEQIAQSVTRNAMMIKVAATHDTS-SIRQYFYKVDGSAARDEALETLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDIAIE 367 >gi|326801263|ref|YP_004319082.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21] gi|326552027|gb|ADZ80412.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21] Length = 597 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 224/372 (60%), Gaps = 18/372 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F+ LG+ VV A+ G+ KPTPIQ + IP +L D G+AQTGTGKTA+F LP+L Sbjct: 4 FSQLGIRHDVVNAISALGFEKPTPIQEQAIPALLTGSSDFVGLAQTGTGKTAAFGLPLLE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +L+ + P+ L+L PTREL Q+ ++ + + KN N+ V + GG Q +++ Sbjct: 64 LLDFSQ---NTPQALVLCPTRELCLQITNDLKNFSKNLDNVHVVAVYGGANISDQLRQIR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + + + +V+DEAD ML+MGF I +I S P ++T Sbjct: 121 RGVQIVVATPGRMLDIIGRKAIDFSGVRYVVLDEADEMLNMGFQEDINDILSTTPDEKKT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT-----YAQYSKKCALL 235 LFSATM E++++++N++ +P + V T ++ I+H + YA + + Sbjct: 181 WLFSATMPAEVRRIAKNYMTDPFELTVGTKNTGNANIDHEYYIVRPRDKYAAFKRIVDFN 240 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ GI+FC K + +L K G++ ++HG++ Q+ R K++ ++E + Sbjct: 241 PEIF--------GIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERS 292 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +QL++A+D+AARG+D+ +V HV NF +P+ ENY HR GRT RAG+ G + +LV +++ Sbjct: 293 LQLLIATDVAARGIDVNNVTHVINFSLPDEIENYTHRSGRTARAGKTGVSISLVTSKELG 352 Query: 356 HIDAIEKLIEKK 367 I IE++I K+ Sbjct: 353 KIRQIERVIGKQ 364 >gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS 18C-A] gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS 18C-A] Length = 572 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 227/377 (60%), Gaps = 12/377 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ V+ A+ D + + TP+Q K IP +L+ +DV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 + L G +I+ PTRELA Q+ + + Y L VA+ G G ++ Sbjct: 61 SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFA--YYLDGVSCVAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + K L GADV+I TPGR + H + G + ++ + ++DEADRMLDMGF I I + Sbjct: 119 ELKSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P + QT++FSATM +++++++ L+NP I++ S AE I Y ++K + Sbjct: 179 PASCQTIMFSATMPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYE--TQKMGI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ + ++ D +K IIF K+ V + SL ++ + +H ++DQ R ++ FK G Sbjct: 236 IKDIFKAGD-LKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+ ARG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R GKA T V +DI Sbjct: 295 QIDVLVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNVDDI 354 Query: 355 KHIDAIEKLIEKKVDWL 371 + IE ++K+V+ + Sbjct: 355 YYFKQIESFLDKEVEKI 371 >gi|323519553|gb|ADX93934.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii TCDC-AB0715] Length = 606 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 228/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHN 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 65 LAGQDTFVPFKERMKA-VTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + P+RI + T ST I T + K Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHK 241 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L + +T+ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 242 KKLLTHWL-ADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E +E +++ Sbjct: 361 RERGKIRALEDYLEARLN 378 >gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|52308057|gb|AAU38557.1| SrmB protein [Mannheimia succiniciproducens MBEL55E] Length = 462 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 149/438 (34%), Positives = 232/438 (52%), Gaps = 19/438 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D LSP+++ A+ GY +PT IQ + IP + DV G A TGTGKTA+F+LP + Sbjct: 23 FEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQH 82 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA E+ + L++A + GG+ ++ + + Sbjct: 83 LLDYPRRKPGAPRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQNHGEIFNK 142 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + +EIL+ DEADRML MGF + I++ + +QT Sbjct: 143 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTF 202 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +I+ + I + + Y K LL + + Sbjct: 203 LFSATLEGELLVDFAERILTDPVKIDAEPSRRERKKINQWYYHADS-YEHKVKLLARFIA 261 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K GI+F ++++V L L K+G + G + Q R + K G + L+V Sbjct: 262 DEQVSK-GIVFVRRREDVRELSEILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTLLV 320 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI D+ HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K++ I Sbjct: 321 ATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAGKKGTAVSFVEGHDYKYLGKI 380 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 ++ E+ L K I + R P + +++K Y QK Sbjct: 381 KRYTEE---------------LLKPRIIEGLEPRTKAPKDGEIKTVSKKQKAYIRQKREE 425 Query: 421 PLKESEKISKLQQDIQEN 438 K ++K +KL++ +N Sbjct: 426 KRKTTQKKAKLRRQDTKN 443 >gi|320581153|gb|EFW95374.1| ATP-dependent RNA helicase [Pichia angusta DL-1] Length = 747 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/384 (38%), Positives = 224/384 (58%), Gaps = 14/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS ++ A+ GY KP+ IQ +IP+ L D+ A TG+GKTA++++P++ Sbjct: 242 FQSLKLSRPILKALSALGYSKPSAIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIER 301 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L +++ R ++L PTRELA QVAD +K G+ N LT L +GG+ Q ++L++ Sbjct: 302 LLYKPSKMPSTRVIVLAPTRELAIQVADVGKKIGQFVNGLTFGLAVGGLNLRQQEQELKK 361 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D++I TPGR++DH N + ++E+LV DEADRML+ GF + I SL+P RQT Sbjct: 362 RPDIVIATPGRLIDHIRNSVSFNVESVEVLVFDEADRMLEEGFQKELTEILSLLPLNRQT 421 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM ++ + + L+ P R+ + P + A + FV + S K ALL +L Sbjct: 422 MLFSATMNSRIKSLIQLSLKKPVRVMIGAPKAAASELVQEFVRIRKRESSKPALLFNILS 481 Query: 241 SQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + + +I F ++K+ L SL G V +HG++ Q R+K + +FK T+ ++ Sbjct: 482 EMDGLHSRVIVFVSRKEMAHRLRISLGLLGLKVSELHGSLTQEQRLKAIVDFKNLTVPIL 541 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA--------- 350 + +DLAARGLDIP + V NFD+P E Y+HR+GRT RAGR G + + V Sbjct: 542 ICTDLAARGLDIPKIELVINFDMPKTYEIYLHRVGRTARAGRKGLSISFVGESSQDRNIV 601 Query: 351 KEDIKHIDA--IEKLIEKKVDWLN 372 KE IK ++ K I + V+W N Sbjct: 602 KEAIKQVETENAGKAIGRNVNWEN 625 >gi|197287125|ref|YP_002152997.1| ATP-dependent RNA helicase RhlB [Proteus mirabilis HI4320] gi|227357184|ref|ZP_03841553.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906] gi|226739541|sp|B4F1V3|RHLB_PROMH RecName: Full=ATP-dependent RNA helicase rhlB gi|194684612|emb|CAR46501.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320] gi|227162716|gb|EEI47683.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906] Length = 432 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 153/421 (36%), Positives = 241/421 (57%), Gaps = 16/421 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F+D L PKV+ A+ G+ T IQ T+P+ ++ HD+ G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALEKKGFSNCTQIQALTLPITVKGHDIAGQAQTGTGKTLAFLTSTFHY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT K PR LI+ PTRELA Q+ + + ++ + + L GG ++ Q K Sbjct: 71 LLTHPAKEGHEKNQPRALIMAPTRELAVQIYTDAQPLAQSTGVKMGLAYGGDGYDEQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L G D++I T GR++D+ +G + +N I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LNNGVDIVIGTTGRLIDYVKQGHINLNAIQVVVLDEADRMYDLGFIKDIRWLFRRMPNAA 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R +LFSAT++ +++++ + NP+ +EV T +I E F Y +K LL Sbjct: 191 ERMNMLFSATLSYRVRELAFEQMNNPEYVEVEPEQKTGFSIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ + IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 248 QTLIE-EEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVPQKKRLRILEDFTQGN 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG+ G + +L +E Sbjct: 307 IDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGKSGNSISLACEEYAL 366 Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 ++ AIE I+ V N D L+ L P + Q R+NN P++ R + Sbjct: 367 NLPAIETYIQHAIPVSKYNSDALLTDLPEPKRRHRPRQ-GQPRRNNSAPRRGNNTQRNNR 425 Query: 412 N 412 N Sbjct: 426 N 426 >gi|258625772|ref|ZP_05720651.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] gi|258582010|gb|EEW06880.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] Length = 460 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ +N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPASIEQIAQSVTRNAMMIKVAATHDTS-SIRQYFYKVDGSAARDEALETLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDIAIE 367 >gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|332673089|gb|AEE69906.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|261878837|ref|ZP_06005264.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella bergensis DSM 17361] gi|270334579|gb|EFA45365.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella bergensis DSM 17361] Length = 632 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 223/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+V P P+Q + IP +L Q +DV +AQTGTGKTA+F +P+L Sbjct: 4 FEELGVSEEIRRAIDELGFVNPMPVQEEVIPYLLGQGNDVIALAQTGTGKTAAFGIPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 + + + + LIL PTREL Q+AD+ + K + + + + GG EAQ + L Sbjct: 64 RTDPTK---KETQALILSPTRELCLQIADDLNAFAKYMDGMHILPVYGGASIEAQIRSLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D NRG ++N+ +V+DEAD ML+MGF I + VP R T Sbjct: 121 HGVQIIVATPGRLIDLMNRGVAKLDNVSNVVLDEADEMLNMGFTDSINAVFEGVPRDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++K+++++L + K I V + + AE + H + A+ K L++++ Sbjct: 181 LLFSATMGKEIEKIAKSYLNDYKEIVVGSRNEGAENVNHVYYMVNAK--DKYLALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+FC K + L K G++ A+HG++ Q+ R + F++ QL+V Sbjct: 239 YYPNIY-GIVFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRKHITQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + +I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSIAIIHTREKHKVRSI 357 Query: 361 EKLIEKK 367 EK+I K+ Sbjct: 358 EKIIGKE 364 >gi|168179718|ref|ZP_02614382.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum NCTC 2916] gi|182669435|gb|EDT81411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum NCTC 2916] Length = 376 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 220/368 (59%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS ++ + ++PTPIQ ++I L+ +DV AQTGTGKT +F+LPM Sbjct: 2 IKFKELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + LI+ PTRELA Q+ + K + +L + GG +Q KKL+ Sbjct: 62 ---ENISPDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR+LDH NR L +++ LV+DEAD ML MGF +++I P RQT Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++ +++PK I + T + I+ + T + +K L ++L Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ IIFC K+ V L +L K+G++ +HG+I Q R +I+ +FK IQ ++ Sbjct: 237 EENPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HVFN+D+P AE+YIHRIGRTGRAG G F VA +D + + I Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355 Query: 361 EKLIEKKV 368 EK I+ K+ Sbjct: 356 EKEIKFKI 363 >gi|330998021|ref|ZP_08321852.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841] gi|329569322|gb|EGG51102.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841] Length = 664 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 225/377 (59%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + GY P P+Q + IP +L +DV +AQTGTGKTA++ LP+L Sbjct: 4 FEELGVSAEIRQAIEEMGYEHPMPVQEEVIPYLLGVNNDVVALAQTGTGKTAAYGLPVLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R + LIL PTREL Q+AD+ E Y K + V + GG E Q + L Sbjct: 64 KVDASRNETQ---ALILSPTRELCLQIADDLENYSKYLPGVRVLPVYGGANIEPQIRTLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G V++ TPGR++D R + ++E +V+DEAD ML MGF I I + VP T Sbjct: 121 KGVQVIVATPGRLIDLMERKAASLEHVENVVLDEADEMLSMGFTESIDKILAGVPENHNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++++S+ +L++ K I V + + AET+ H + +A+ K L++++ Sbjct: 181 LLFSATMSREIERISKKYLRDAKEIVVGSRNEGAETVNHVYYMVHAK--DKYLALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC + + L + G++ ++HG++ Q+ R + F++ +Q +V Sbjct: 239 YYPKI-YAIIFCRTRLETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHRVQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ ENY HR GRTGRAG+ G + +V + I I Sbjct: 298 ATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERSKIREI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 EK+I K +++ G++ S Sbjct: 358 EKVIGK--EFVKGEMPS 372 >gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180] gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|294651664|ref|ZP_06728967.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194] gi|292822443|gb|EFF81343.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194] Length = 647 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q + IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L++ PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 65 LAGQETFVPFKERMKA-VTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ +E L++DEADRMLD+GF ++ I Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIG 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + +P+RI + T ST + T + K Sbjct: 183 ELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDG-FEHK 241 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L S +++ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 242 KKLLTHWL-SDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAVTLATY 360 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E ++ +++ Sbjct: 361 RERGKIRALEDYLDARLN 378 >gi|254786531|ref|YP_003073960.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901] gi|237683925|gb|ACR11189.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901] Length = 604 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADL L ++ V GY +P+PIQ TIP +++ DV G+AQTGTGKTA+F LP+L Sbjct: 10 LGFADLNLPSSLLDTVRKLGYERPSPIQAATIPALIEGRDVIGMAQTGTGKTAAFALPIL 69 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ G + P+ L+L PTRELA QV++ F+ Y N N V + GG Q + L Sbjct: 70 AKIKSGS---KNPQALVLCPTRELAIQVSEAFQSYAANIPNFHVLPIYGGQDMRTQLRGL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGR+LDH +R L ++ + +V+DEAD ML MGF ++ I P Q Sbjct: 127 QRGVQVIVGTPGRLLDHLDRRSLDLSELHTVVLDEADEMLRMGFNEDVEAILKKTPGNHQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM +++V++ +L+NP +++ T +T E IE + + K L ++L Sbjct: 187 IALFSATMPPPIRRVADTYLKNPVEVKIETSVTTNENIEQFYWLVSG--TNKLEALTRIL 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D + IIF K + V+L L +GFS ++G+++Q R + + K G + ++ Sbjct: 245 EVED-FEGMIIFVRTKNSTVDLAERLNARGFSAAPLNGDMNQALRERTIEQLKGGKLDMI 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLD+ + HV NFD+P E Y+HRIGRTGR GR GKA VA + + + + Sbjct: 304 IATDVAARGLDVERISHVLNFDIPYDDEAYVHRIGRTGRGGRTGKAILFVAPRERRMLRS 363 Query: 360 IEKLIEKKV 368 IEK +K+ Sbjct: 364 IEKTTRQKI 372 >gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767] gi|91207781|sp|Q6BQ61|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3 gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii] Length = 477 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 216/370 (58%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P+++ A+ + KPTPIQ + IP L+ D+ G+AQTG+GKTA+F +P+L Sbjct: 67 FNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQA 126 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + +A L+L PTRELA Q+ + F+ G + L ++GG+ Q + L R Sbjct: 127 LWEAQAAYY---GLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRK 183 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +L+ TPGRI+DH K + N++ LV+DEADR+LDM F P + I ++P R T Sbjct: 184 PHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTTY 243 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT+++ K+ L NP R+ V+ TA+ + + Y K L LL + Sbjct: 244 LFSATMTNKIAKLQRASLHNPVRVAVSNKYQTADNLVQSMMLVSDGY--KNTYLIHLL-N 300 Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + K+ IIF C + L L GFS +HG + Q R+ L+ FK G + Sbjct: 301 EFLGKSIIIFTRTCAHSQRTALLARIL---GFSAVPLHGQLTQAQRLGSLNKFKAGKANI 357 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARGLDIP V V N+D+P ++ YIHR+GRT RAG+ GK+ +L+ + D++ Sbjct: 358 LIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYL 417 Query: 359 AIEKLIEKKV 368 IE ++ KK+ Sbjct: 418 RIESVLGKKL 427 >gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30] Length = 492 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|218676540|ref|YP_002395359.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32] gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 468 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 145/370 (39%), Positives = 216/370 (58%), Gaps = 15/370 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F+DLGL ++ + + Y +PTPIQ + IP VL D+ A TG+GKTA+F LP+L Sbjct: 49 NFSDLGLISPLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 108 Query: 61 -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 L++ + LIL PTRELA QVAD+ + Y ++N + + GG+ Sbjct: 109 QIHEDAPLDRRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVN 168 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + I L Sbjct: 169 TQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKL 228 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT ++++ ++ L +P IEV S+ A T ++ F + +K Sbjct: 229 LPSKKQTLLFSATFPEQVKTLTHELLNDP--IEVQLQSANASTLVQRVF---EVEKGRKT 283 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ALL L+Q Q + +IF N K + +L L K+G HG+ Q SR +IL +FK Sbjct: 284 ALLAHLIQ-QHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFK 342 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I +++A+D+AARGLDI + V NFD+P +Y+HRIGR+GR+G G A +L+ E Sbjct: 343 SGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHE 402 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 403 DYHHFTIIEK 412 >gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 595 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 143/360 (39%), Positives = 215/360 (59%), Gaps = 9/360 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS +++ AV D G+ +P+PIQ+ +P +L +D G AQTGTGKTA+F LP+L Sbjct: 5 FEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPILDK 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R + LIL PTRELA QVA+ K + + + + GG P E Q + L + Sbjct: 65 LTPERN----TQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALAK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR++DH RG L ++ + V+DEAD MLDMGF I+ I P + Q + Sbjct: 121 GVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQRV 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++++S+ FL+ P+ + V T IE + +K L +LL S Sbjct: 181 LFSATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPH--QKMDALCRLLDS 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++FC+ K+ + L+++G+ ++HGN+ Q R +++ F+ + ++VA Sbjct: 239 R-AFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHIDAI 360 +D+AARGLD+ DV V N+D+P+ E Y+HRIGRTGRAGR G AFT V +E K D I Sbjct: 298 TDVAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDII 357 >gi|255036249|ref|YP_003086870.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254949005|gb|ACT93705.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM 18053] Length = 446 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 152/374 (40%), Positives = 218/374 (58%), Gaps = 8/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ ++ A+ +AGY PTPIQ K +++ DVCGIAQTGTGKT +++LP L Sbjct: 2 MTFEDLNLTKPLLKALSEAGYTTPTPIQHKVFSVMMSGKDVCGIAQTGTGKTFAYLLPTL 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +E A+ R+P+ L+L PTREL QV + K L V + GG + Q +L Sbjct: 62 RQIE--YAKDRLPQLLVLVPTRELVVQVVEEVRKLAAYTTLQVVGVYGGGNIKVQMAELH 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GADV++ TPGR+ D G L +++ LVIDE D ML++GF ++NI L+P RQ Sbjct: 120 EGADVVVATPGRLFDLAMNGSLKTKSVKKLVIDEVDEMLNLGFRTQLKNILDLLPQRRQN 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQLL 239 LLFSAT+T E++ + + + +P RIE + + IE A Y + K LL +LL Sbjct: 180 LLFSATITQEVEALMKAYFNDPVRIEAAPVGTPLDNIEQQ--AYYVPNFYTKVNLLDKLL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + + M +IF KK L LE G+ + IH N DQ R + F G + Sbjct: 238 EQHEEMNKVLIFVATKKLADQLYGQLE-LGYLDRIGVIHSNKDQNHRFNTIRQFHAGNYR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L++A+D+ ARGLD+ +V HVFNFD+P ENYIHRIGRTGRA R G A + +++ + Sbjct: 297 LLIATDIIARGLDVAEVSHVFNFDIPEIPENYIHRIGRTGRADRKGIAISFISEREKPFQ 356 Query: 358 DAIEKLIEKKVDWL 371 + IE L++ ++ L Sbjct: 357 EQIEALMDFEIPVL 370 >gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 572 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 222/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L +++ A+ + G+ + +PIQ + IP+ ++ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121 +K +V+ + +IL PTRELA QVA+ + K + T L I GG Q + L+ Sbjct: 64 -QKVDPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSLKD 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH R + M+++ +V+DEAD ML+MGF+ ++ I S +P RQTL Sbjct: 123 GTQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +FSATM + ++ F +P + V T + + + K ++ +LL Sbjct: 183 MFSATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPK--NKVEVMCRLLDM 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 K I+FCN K+ V L +L+ +G+ +HG++ Q R +++ +F+ G ++VA Sbjct: 241 Y-APKLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+DVP E Y+HRIGRTGRAGR GKAF+LV +++ + I+ Sbjct: 300 TDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQ 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RYCKTKI 366 >gi|158520071|ref|YP_001527941.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158508897|gb|ABW65864.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans Hxd3] Length = 464 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 137/386 (35%), Positives = 225/386 (58%), Gaps = 10/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D+ L ++ A+ D G+ TPIQ + +P L D G AQTGTGKTA+F++ +LT Sbjct: 56 FHDMDLPDALMHAIYDLGFTYCTPIQAEILPSTLAGRDAFGRAQTGTGKTAAFLISILTH 115 Query: 63 LE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + + PR L+L PTREL Q+ + ++ ++ + + + GG+ F+ Q + Sbjct: 116 MHNNPITAARKPGTPRALVLAPTRELVIQIGEEAQQLARHLPVNIVSVFGGMDFKQQQDR 175 Query: 119 LER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L R D+++ TPGR+LD R +++ +EILVIDEADRMLDMGFIP ++ I P Sbjct: 176 LTREPVDIIVATPGRLLDFSRRRAVMLKQVEILVIDEADRMLDMGFIPDVRKIIYATPQK 235 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT+T+ + +++ + ++P ++ + ++++ V +K ALL Sbjct: 236 GNRQTLLFSATLTEAITRLASAWTRDPVQVAIEPEHVAVDSVDQ--VVYIVTSDRKLALL 293 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ Q+ + ++FCN+K V L L + G + G++ Q+ R + L +FK G Sbjct: 294 YNIIVQQN-LSRVLVFCNRKDAVSRLADRLTRYGIKCEILTGDVPQQKRSRRLEDFKSGK 352 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+ ARG+ + D+ HV NFD+P+ E+Y+HRIGRTGRAG G + + + D Sbjct: 353 IRVLVATDVMARGIHVEDMDHVVNFDLPHDPEDYVHRIGRTGRAGAVGTSISFADERDSF 412 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPP 381 +I IE +E+ + + D + L P Sbjct: 413 YIPDIEDFMERPLPCIEPDSTWLELP 438 >gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4] gi|74681080|sp|Q5B5E7|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3 gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4] gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus nidulans FGSC A4] Length = 465 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 215/370 (58%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ ++ A + GY PTPIQ + IPL L+ DV G+A+TG+GKTA+F LPML Sbjct: 48 FKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPML-- 105 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P+TL +L PTRELA Q++ FE G + A+++GG+ AQ+ L Sbjct: 106 ----QALMEAPQTLFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIAL 161 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + N++ L IDEADR+LDM F + I ++P TR Sbjct: 162 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTR 221 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATM+ +++ + L NP R+ V++ T T++ ++ + K L L Sbjct: 222 HTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICI--PHKHKNLYLVYL 279 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ ++ IIF + L GF +HG + Q +R+ L F+ + + Sbjct: 280 L-NEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDI 338 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP V VFNFD+P ++ YIHR+GRT RAG+ G A + V + D++ Sbjct: 339 LVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWL 398 Query: 359 AIEKLIEKKV 368 IE + KK+ Sbjct: 399 RIEHALSKKL 408 >gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16] Length = 492 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme DSM 15981] gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme DSM 15981] Length = 595 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L +++ AV + G+ + +PIQ + IP+ ++ D+ G AQTGTGKTA+F +P+L Sbjct: 31 MKFDTLQLDERILRAVTEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLL 90 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 +K +V+ + ++L PTRELA QVA+ + GK + + V + GG Q + L Sbjct: 91 ---QKVDPKVKKLQAIVLLPTRELAIQVAEEVRRLGKFMHGIKVLPIYGGQDIVKQIRSL 147 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G V+I TPGR++DH R + ++ + +V+DEAD ML+MGF+ ++ I S +P RQ Sbjct: 148 KDGTQVIIGTPGRVMDHMRRKTVKLDYVNTVVLDEADEMLNMGFLEDMETILSQLPEERQ 207 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL+FSATM + +++ F + P + V T + + + K ++ +LL Sbjct: 208 TLMFSATMPPAIAEIARKFQKEPVTVRVVKKELTVPKVTQYYYEVKPK--NKVEVMCRLL 265 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 K I+FCN KK V L +L+ +G+ +HG++ Q R +++++F+ G ++ Sbjct: 266 DLY-APKLSIVFCNTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDIL 324 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR GKAF+LV ++ + Sbjct: 325 VATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLRD 384 Query: 360 IEKLIEKKV 368 I++ + ++ Sbjct: 385 IQRYCKTRI 393 >gi|322507406|gb|ADX02860.1| rhlB [Acinetobacter baumannii 1656-2] gi|323518696|gb|ADX93077.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii TCDC-AB0715] Length = 389 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 11 FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K NL + L+GG+ F+ Q K Sbjct: 71 LLNNPVQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 129 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L+ D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 130 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 189 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ ++ +L P +E+ T +E Q K L Sbjct: 190 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 247 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ ++ + +IF N++ V L L+K G+ V + G I Q R+K+L FK+G Sbjct: 248 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 306 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 307 KHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 366 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 367 FYLPEIEKAIGKKL 380 >gi|289678220|ref|ZP_06499110.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae FF5] gi|330975704|gb|EGH75770.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 483 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 96 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 453 QLPAIEEKLGRKI 465 >gi|149910882|ref|ZP_01899514.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36] gi|149806036|gb|EDM66019.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36] Length = 397 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 215/369 (58%), Gaps = 5/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F + L ++ V GY +PTPIQ + IP ++ +D+ GIAQTGTGKTA+F LP++ Sbjct: 3 EFKEFSLLESIIDRVSLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIIN 62 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + + + R+LIL PTRELA+Q+ N + Y L ++ GG+ + Q + Sbjct: 63 NFGRNKIDINAKSTRSLILTPTRELASQIMQNIDDYADGLGLKTKVVYGGVGRQNQVDSI 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+LD + +E+ V+DEAD MLDMGF +Q I S +P RQ Sbjct: 123 ALGLDILVATPGRLLDLIKTDDINFKALEVFVLDEADTMLDMGFFKDVQRIISKLPKNRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E++ +++ L +P +I++ + T E I + + S K LL +L Sbjct: 183 TLLFSATMPAEIEILADAILTDPTKIQITAETVTIERINQSVY--HLEKSNKVPLLLNIL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + K +IFC K + +LE+ + ++H Q R + L NFK+ + ++ Sbjct: 241 E-KSHYKKVLIFCKTKPGADIIVEALEEASITAASLHSGKTQAVREEALQNFKDSNLSVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ ++ V N+++P NYIHRIGRT RAG+ G A + + DI +++ Sbjct: 300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGIAISFAVENDITLLNS 359 Query: 360 IEKLIEKKV 368 IEK I K + Sbjct: 360 IEKSIGKAI 368 >gi|27364381|ref|NP_759909.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6] gi|32363316|sp|Q8DDN6|RHLB_VIBVU RecName: Full=ATP-dependent RNA helicase rhlB gi|27360500|gb|AAO09436.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6] Length = 435 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 225/383 (58%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL+P+VV + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T +GR + PR +I+ PTRELA Q+ ++ E + + AL GG ++ Q Sbjct: 71 LLTTPAHEGRQPTQ-PRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLT 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+ G DVLI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAP 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 ++ L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 QERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R KIL F +G+ Sbjct: 248 QTLIE-EEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGS 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + L+VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + ++ Sbjct: 307 VDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE+ IE + + D S+L Sbjct: 367 NLPAIEEYIEHTIPVSDYDSSAL 389 >gi|315924965|ref|ZP_07921182.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621864|gb|EFV01828.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter alactolyticus ATCC 23263] Length = 550 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 217/370 (58%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L + +++ AV G+ + T IQ + IP +L D+ G +QTGTGKT +F +P + Sbjct: 6 MKFNTLAVDQRILDAVARMGFAEMTAIQAQAIPRLLAGKDIIGRSQTGTGKTLAFAIPAV 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ++ R P+ LIL PTRELA QVA FEK + + +A + GG Q + Sbjct: 66 QKVDPAAKR---PQVLILLPTRELALQVAGEFEKLLTCSEGVAIAAVFGGASMPKQIRAF 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + GA +++ TPGRI+DH RG L + + ++V+DEAD MLDMGF I+ I V Q Sbjct: 123 KSGAQIVVGTPGRIMDHLRRGTLRFDAMRMVVLDEADEMLDMGFREDIEAILDRVDHPVQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATM + K++E + ++P+ + + + A IE + + +K L +LL Sbjct: 183 TALFSATMPAPITKMAELYQRDPETVAIAPKNMVAAGIEERYYSIVD--GQKFEALTRLL 240 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +IFCN KK V L ++L+ +G+S IHG++ Q +R+ +L F EG + ++ Sbjct: 241 AVYRP-RRALIFCNTKKYVDELTNALQDRGYSADKIHGDMRQEARLAVLRRFAEGRLAIL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV VFN+DVP+ E Y+HRIGRTGRAG+ G + TL + D + Sbjct: 300 VATDVAARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARRRDQYRLKK 359 Query: 360 IEKLIEKKVD 369 I + K ++ Sbjct: 360 ITRYTRKPIE 369 >gi|90408655|ref|ZP_01216807.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3] gi|90310231|gb|EAS38364.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3] Length = 418 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 154/405 (38%), Positives = 239/405 (59%), Gaps = 14/405 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF---VLPM 59 F DL L ++ A+ + G+ TPIQ ++P+ L D+ G AQTGTGKT +F V Sbjct: 11 FIDLPLQESLLSALTELGFEYCTPIQAISLPITLLGKDIAGQAQTGTGKTLAFLPAVFNH 70 Query: 60 LTILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L I ++ R + PR +IL PTRELA Q+ + + K+ NL + L GG E Q K Sbjct: 71 LLINKEPENRSKDQPRAIILAPTRELAIQIHKDAMVFAKHTNLRLGLAYGGEKVEIQRNK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 LE+G D+LI T GRI+D +G + +N+I+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LEKGVDILIGTTGRIIDFVKQGTINLNSIQSVVLDEADRMFDLGFIKDIRYLFRRMPESN 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R +LFSAT++ ++Q+++ + +P+ I++ T+E I E F Y ++K LL Sbjct: 191 LRLNMLFSATLSHKVQELAFEHMNSPEHIQIEPERMTSENISEELF---YPSNAEKMHLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ ++ + I+F N K + L G + G++ Q+ R KILS F +G Sbjct: 248 LTLME-EEWPEKAIVFANTKHTCEKVWGYLAGDGLRAGLLTGDVPQKKREKILSQFTDGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG+ G+A TL ++ Sbjct: 307 IDVLVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGQKGQAITLACEKYAF 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ---HNHARKNN 397 ++ IE I+ + D +L L K+ + + HN+ RK++ Sbjct: 367 NLPEIEAFIKHSIPVSEFDRDALVQTLPKMIVTKYKAHNNRRKDS 411 >gi|322806278|emb|CBZ03846.1| ATP-dependent RNA helicase BA2475 [Clostridium botulinum H04402 065] Length = 376 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 219/366 (59%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ + ++PTPIQ ++I L+ +DV AQTGTGKT +F+LPM Sbjct: 4 FEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMF-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E + + LI+ PTRELA Q+ + K + +L + GG +Q KKL+ Sbjct: 62 -ENISPDIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNILATYGGKDIGSQIKKLKNN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH NR L +++ LV+DEAD ML MGF +++I P RQTL Sbjct: 121 IHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLC 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++K++ +++PK I + T + I+ + T + +K L ++L + Sbjct: 181 FSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILDEE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIFC K+ V L +L K+G++ +HG+I Q R +I+ +FK IQ ++A+ Sbjct: 239 NPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HVFN+D+P AE+YIHRIGRTGRAG G F VA +D + + IEK Sbjct: 298 DVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMIEK 357 Query: 363 LIEKKV 368 I+ K+ Sbjct: 358 EIKFKI 363 >gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12] gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12] Length = 492 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 213/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMHLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|94266535|ref|ZP_01290222.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93452836|gb|EAT03359.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 524 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 145/389 (37%), Positives = 230/389 (59%), Gaps = 19/389 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+V+ A+ G+ TPIQ + +P L HD G AQTGTGK+A+F++ ++T Sbjct: 101 FHDFDLAPEVMRAIQALGFEYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITR 160 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + RA + P+ LIL PTRELA Q+ + E + L + GG+ +E Q ++ Sbjct: 161 LLRQRADQPRALGFPQALILAPTRELAIQIHQDAEGLARFSGLRCVAVYGGVDYEKQRQR 220 Query: 119 LER-GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP- 175 E+ D+LI TPGR+LD F R K+L + +++LVIDEADR+LDMGFIP ++ I P Sbjct: 221 FEQEPVDLLIATPGRLLD-FARQKVLSLKEVQVLVIDEADRLLDMGFIPDVRRIIQQTPE 279 Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL FSAT+T ++ +++ + P +E+ AE++E + A +K + Sbjct: 280 KGKRQTLFFSATLTAQISSLADQWTHKPVTVEIEPEQVAAESVEQ--LVYLATREEKFTI 337 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ ++ ++ I+FCN++ + L + S + G + Q+ RM L NFK G Sbjct: 338 LYNLIVGRE-LERVIVFCNRRDVTRRVRDRLYRHDISCAMLSGEVGQQQRMNTLDNFKAG 396 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++VA+D+A RGL + + HV N+++P AE+Y+HRIGRTGRAG+ G + + +++ Sbjct: 397 KIRILVATDVAGRGLHVEGISHVVNYNLPEDAEDYVHRIGRTGRAGQSGTSVSFADEDES 456 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLE 383 ++ AIE ++L LS + PP E Sbjct: 457 FYLPAIE-------EYLGNKLSCVYPPEE 478 >gi|330819324|ref|YP_004348186.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3] gi|327371319|gb|AEA62674.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3] Length = 465 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 150/394 (38%), Positives = 219/394 (55%), Gaps = 18/394 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L LSP ++ + GY + TPIQ ++PL L D+ A+TG+GKTA+F L +L+ Sbjct: 10 FSELALSPAMLANLEQLGYTEMTPIQAASLPLALAGQDLIAQAKTGSGKTAAFSLALLSR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ +IL PTRELA QVA + + N+ V L GG P Q LE Sbjct: 70 LDARRFDVQ---AMILCPTRELADQVAQEIRRLARAEENIKVLTLCGGTPMRPQAASLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH RG L + + LV+DEADRMLDMGF I + P R TL Sbjct: 127 GAHIVVGTPGRIMDHLERGTLALGALNTLVLDEADRMLDMGFFDDIATVARQCPTERLTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S FL++PK I++ + + + T ++ + QLL Sbjct: 187 LFSATYPEGITKLSRQFLRDPKEIKLAEQHDARKIRQRFYEVT---EDERLHAVGQLLNH 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 I FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 244 YRPAST-IAFCNTKQQCRDLLDVLSAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + ++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGIE 362 Query: 362 KLIEKKVDWLNGDLSSLN--------PPLEKIDI 387 + ++V+W L+SL PP+E + I Sbjct: 363 QAQGREVEW--QPLASLTPASNEPLLPPMETLQI 394 >gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus gasseri 224-1] gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus gasseri 224-1] Length = 452 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 136/355 (38%), Positives = 217/355 (61%), Gaps = 15/355 (4%) Query: 34 LVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFE 93 +VL+ DV G AQTGTGKTA+F LP+L L+K ++ +++EPTRELA Q + Sbjct: 1 MVLEGKDVIGQAQTGTGKTAAFGLPILQNLDKQHDSIQ---AIVIEPTRELAIQTQEELF 57 Query: 94 KYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVID 153 + G++ V ++ GG Q + L++ +L+ TPGR+LDH RG + ++ ++ +V+D Sbjct: 58 RLGRDEKARVQVVYGGADIRRQIRALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLD 117 Query: 154 EADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213 EAD MLDMGFI I++I + QTLLFSATM + ++ E F+ +P+ +++ T Sbjct: 118 EADEMLDMGFIQDIESILNYASSKHQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELT 177 Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273 A I+ FV A+ ++K +L +L+ Q+ +IF K+ V L L+ +G++ Sbjct: 178 ANLIDQYFVR--AKENEKFDILCRLIDVQNP-DLAVIFGRTKRRVDELTRGLQARGYNAA 234 Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333 IHG++ Q RM +L F++G + ++VA+D+AARGLDI V HV+N+D+P ++Y+HRI Sbjct: 235 GIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSYVHRI 294 Query: 334 GRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV---------DWLNGDLSSLN 379 GRTGRAG++G + T V +I ++ IE+L KK+ + G LS+ N Sbjct: 295 GRTGRAGQNGMSVTFVTPNEIGYMRTIEQLTHKKMMLLKPPTDEEAFKGQLSAAN 349 >gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum DSM 5476] gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum DSM 5476] Length = 563 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 137/349 (39%), Positives = 215/349 (61%), Gaps = 5/349 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L LS + A+ G+ T IQ ++IPL+ +DV G +QTGTGKT +F +P + + Sbjct: 6 FAQLNLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGVPAVEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVAL-LIGGIPFEAQNKKLER 121 ++ R + + LIL PTRELA Q EK K A+ + GG P + Q +L+R Sbjct: 66 IDTEELRNKT-QVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMRLKR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA++++ TPGR++DH R L +++++++++DEAD ML+MGF ++ I P RQT+ Sbjct: 125 GANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTI 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ + ++P+ IE+N T + IE F +K L +LQ Sbjct: 185 LFSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEV--PMGRKMDALGIILQY 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 D + IIFCN K+ V + L++ G+S +HG++ Q R K++ +FK G +++VA Sbjct: 243 HDPALS-IIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 +D+AARG+D+ +V +V N+DVP E Y+HRIGRTGRAG+ GKA T+ + Sbjct: 302 TDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICS 350 >gi|303231103|ref|ZP_07317843.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-049-V-Sch6] gi|302514234|gb|EFL56236.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-049-V-Sch6] Length = 432 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 219/363 (60%), Gaps = 6/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ +++ + G +PTPIQ ++IP+V + +D+ AQTGTGKT +F+LP I Sbjct: 4 FKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++ V + LI+ PTREL Q++D + G ++ + LIGG E+Q ++L R Sbjct: 61 LQRIHTDVHQEQVLIIAPTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQLQQLGRR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L +++I +V+DEAD+ML MGF+P I+N+ RQ LL Sbjct: 121 PHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ D+++ +++ ++ P + T ++I+ + K L +++Q + Sbjct: 181 FSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPE--DKTPRLIKMIQ-E 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D I+FCN+++ + L + L G ++ +HG++ Q R +IL +F + Q++VA+ Sbjct: 238 DNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HV+N+DVP+ + YIHRIGRTGRAG G A T D + IE+ Sbjct: 298 DIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRRIER 357 Query: 363 LIE 365 I+ Sbjct: 358 AIQ 360 >gi|227499384|ref|ZP_03929495.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098] gi|227218446|gb|EEI83689.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098] Length = 553 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 153/417 (36%), Positives = 233/417 (55%), Gaps = 25/417 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + + ++ A+ D GY P+PIQ +TI +L DV G AQTGTGKTA+F +P++ Sbjct: 15 MKFNEFNIGEDILQAIDDMGYTNPSPIQEETIQYLLDGRDVIGQAQTGTGKTAAFAIPLV 74 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 +E + ++LIL PTREL QVA EK K ++ V L GG Q K L Sbjct: 75 ENVEAND----ITQSLILCPTRELCMQVAREVEKLTKYKKDIKVLALYGGTQIVKQIKAL 130 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+GA++++ TPGR++D R L ++ ++ +V+DEAD M DMGF ++ I RQ Sbjct: 131 EKGAEIVVGTPGRVIDLMKRRVLKLDMLKNVVLDEADEMFDMGFRDDMKVILDATNPQRQ 190 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T FSATM E + S+ + NP++I + T E I+ ++ + + K L +LL Sbjct: 191 TCFFSATMGKEFAEFSKLYQNNPQKIVIKADEVTVEKIDQYYIKL--KEAMKEETLTRLL 248 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + K I+FCN K+ V L L K+ + V +HG++ Q +R +++ F+ TIQ++ Sbjct: 249 EINNP-KLAIVFCNTKRKVDKLVEELTKKSYLVDGLHGDLKQSARDQVMKKFRNKTIQIL 307 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARGLDI DV V N+D+P E Y+HRIGRT RAG+ G +++L+A D + A Sbjct: 308 IATDVAARGLDIDDVDLVINYDLPQLDEYYVHRIGRTARAGKSGVSYSLIAGRDRDRLRA 367 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP------QKSTGFDRRK 410 IEK + D+ + P + Q + +NN I + S DR K Sbjct: 368 IEK-------YTKADIKEIPIP----SLIQMDRKSENNLIENLSEKLEASPKLDREK 413 >gi|148379972|ref|YP_001254513.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. ATCC 3502] gi|153932857|ref|YP_001384271.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str. ATCC 19397] gi|153936987|ref|YP_001387810.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str. Hall] gi|148289456|emb|CAL83553.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152928901|gb|ABS34401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. ATCC 19397] gi|152932901|gb|ABS38400.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. Hall] Length = 376 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 219/366 (59%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ + ++PTPIQ ++I L+ +DV AQTGTGKT +F+LPM Sbjct: 4 FEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMF-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E + + LI+ PTRELA Q+ + K + +L + GG +Q KKL+ Sbjct: 62 -ENISPDIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH NR L +++ LV+DEAD ML MGF +++I P RQTL Sbjct: 121 IHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLC 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++K++ +++PK I + T + I+ + T + +K L ++L + Sbjct: 181 FSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILDEE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIFC K+ V L +L K+G++ +HG+I Q R +I+ +FK IQ ++A+ Sbjct: 239 NPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HVFN+D+P AE+YIHRIGRTGRAG G F VA +D + + IEK Sbjct: 298 DVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMIEK 357 Query: 363 LIEKKV 368 I+ K+ Sbjct: 358 EIKFKI 363 >gi|153001334|ref|YP_001367015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|151365952|gb|ABS08952.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] Length = 427 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 205/362 (56%), Gaps = 10/362 (2%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LG+ ++ + + YV PTP+Q TIP VL DV A TG+GKTA+F +P+L L + Sbjct: 14 LGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVE 73 Query: 66 GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120 + + R L+L PTRELA QVAD+F Y + N L + GG+ AQ + L Sbjct: 74 AKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GADVL+ TPGR+LD + + +N + LV+DEADRML +GF + + +P +QT Sbjct: 134 AGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQT 193 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +E+++++ L P +E S TI + K ALL L++ Sbjct: 194 LLFSATFPEEVRELTAKLLNAP--LEYQLQSEQESTIHQRVITV--NRPMKTALLAHLIK 249 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF + K +L L K+G S HG+ Q +R ++L FK G I +++ Sbjct: 250 EHE-WSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ ED H I Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368 Query: 361 EK 362 EK Sbjct: 369 EK 370 >gi|320157764|ref|YP_004190143.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O] gi|319933076|gb|ADV87940.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O] Length = 435 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 225/383 (58%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL+P+VV + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T +GR + PR +I+ PTRELA Q+ ++ E + + AL GG ++ Q Sbjct: 71 LLTTPAHEGRQPTQ-PRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLA 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+ G DVLI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAP 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 ++ L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 QERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R KIL F +G+ Sbjct: 248 QTLIE-EEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGS 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + L+VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + ++ Sbjct: 307 VDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE+ IE + + D S+L Sbjct: 367 NLPAIEEYIEHTIPVSDYDSSAL 389 >gi|226953843|ref|ZP_03824307.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244] gi|226835434|gb|EEH67817.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244] Length = 647 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 141/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q + IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A V P L++ PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 65 LAGQETFVPFKERMKA-VTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ +E L++DEADRMLD+GF ++ I Sbjct: 124 FGKQIQQL-KGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIG 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + +P+RI + T ST + T + K Sbjct: 183 ELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDG-FEHK 241 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L S +++ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 242 KKLLTHWL-SDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAVTLATY 360 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E ++ +++ Sbjct: 361 RERGKIRALEDYLDARLN 378 >gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24] Length = 491 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 215/369 (58%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K+ I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 APEKS-IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|157826077|ref|YP_001493797.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford] gi|157800035|gb|ABV75289.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford] Length = 410 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 214/364 (58%), Gaps = 13/364 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 3 NFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFI 62 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K +Y + A+LIGG P Q +L++ Sbjct: 63 KNKTTA-----LILVPTRELATQIHSTLNKVTTSYKMNSAVLIGGEPMHKQFMQLKKNPK 117 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 +I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P RQ L+FS Sbjct: 118 AIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + VS+ +L NP RI V + A I E V+ ++S+ L +QL + Sbjct: 178 ATMPKHIIVVSQKYLNNPVRITVGAANKAAAEIKQESIHVSDKEKFSE---LTKQLGNRE 234 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ IIF K++ L L+ + AIHG++ QR R +++ +F++ ++MVA+ Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +DI AI++ Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDIIRWRAIDR 351 Query: 363 LIEK 366 L+ K Sbjct: 352 LVNK 355 >gi|323524408|ref|YP_004226561.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1001] gi|323381410|gb|ADX53501.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001] Length = 467 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 219/392 (55%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L + + GYV+ TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 11 FNQLPLPAAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ AR + ++L PTRELA QV + + N+ V L GG P Q LE Sbjct: 71 LD---ARKFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTL 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ FL+NPK +++ + + + + + LL + Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDDTKIRQRFYEVSEDERLHAVGLLLNHYRP 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 248 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + IE Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGGIE 363 Query: 362 KLIEKKVDWLN-GDLSS-----LNPPLEKIDI 387 + +++V+W +L+S L PP+E + I Sbjct: 364 QAQKREVEWHKLSELTSTSNEPLLPPMETLQI 395 >gi|312131519|ref|YP_003998859.1| dead/deah box helicase domain protein [Leadbetterella byssophila DSM 17132] gi|311908065|gb|ADQ18506.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila DSM 17132] Length = 408 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 220/361 (60%), Gaps = 4/361 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + + P++ A+ D GY KPT IQ K +P VL D+ GIAQTGTGKTA+F +P+L Sbjct: 1 MKFENYRILPEIKRAIADLGYKKPTDIQYKVLPKVLAGEDIMGIAQTGTGKTAAFAIPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L + + + R L++ PT ELA Q+AD F+ KN L + L G E Q K L+ Sbjct: 61 HLLASEK-KSKSLRCLVMVPTHELAQQIADVFKSLAKNTRLKIMALYGSTDQEPQIKALQ 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGR+ D +G L + +I+ L++DEADRMLD+GF I ++ +P QT Sbjct: 120 KGVDVLVTTPGRMFDLQAQGHLSLEDIKFLILDEADRMLDLGFYQDIIDVKKRIPKRHQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSAT+ ++++K++ + ++N RI+++ ++ I+H V + K L++++ Sbjct: 180 LFFSATLDEKIKKLAYSTVKNAIRIQISPDDPVSKNIDHSVVMVSME--DKRFFLERMI- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + I+F K + ++ + +H + R L +FK+G +++ Sbjct: 237 TENPQQKIIVFVRTKVRAERVAAAMARVNIKTVTLHSDKSHIERKAALESFKKGETWVLI 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D++ARG+DIP V +V N+D+P+ AENY+HRIGRTGR + GKA + + E++ +++I Sbjct: 297 ATDVSARGVDIPLVEYVINYDLPDVAENYVHRIGRTGRGTQKGKAVSFCSDEELPLLESI 356 Query: 361 E 361 E Sbjct: 357 E 357 >gi|303229600|ref|ZP_07316388.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-134-V-Col7a] gi|302515725|gb|EFL57679.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-134-V-Col7a] Length = 432 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 219/363 (60%), Gaps = 6/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ +++ + G +PTPIQ ++IP+V + +D+ AQTGTGKT +F+LP I Sbjct: 4 FKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLP---I 60 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++ V + LI+ PTREL Q++D + G ++ + LIGG E+Q ++L R Sbjct: 61 LQRIHTDVHQEQVLIIAPTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQLQQLGRR 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR+LDH RG L +++I +V+DEAD+ML MGF+P I+N+ RQ LL Sbjct: 121 PHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ D+++ +++ ++ P + T ++I+ + K L +++Q + Sbjct: 181 FSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPE--DKTPRLIKMIQ-E 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D I+FCN+++ + L + L G ++ +HG++ Q R +IL +F + Q++VA+ Sbjct: 238 DNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI + HV+N+DVP+ + YIHRIGRTGRAG G A T D + IE+ Sbjct: 298 DIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRRIER 357 Query: 363 LIE 365 I+ Sbjct: 358 AIQ 360 >gi|262370602|ref|ZP_06063927.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262314402|gb|EEY95444.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 640 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 228/380 (60%), Gaps = 19/380 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD L + A+ G+ PTP+Q ++IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FADFPLHESLQQALQSLGFTAPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADN---FEKYGKNYNLTVALLIGG 109 L E+ +A + P L+L PTRELA QV+ + F ++ K +A ++GG Sbjct: 65 LAAQETFVPFKERMKA-ITQPNILVLCPTRELAQQVSQDAIGFVRHMKGAR--IAAIMGG 121 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 +PF Q ++L +GA V++ TPGR+LD NR ++ ++ ++ L++DEADRMLD+GF ++ Sbjct: 122 MPFGKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEA 180 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229 I+ L +QTL+FSAT + ++E + +P+RI + T ST I T + Sbjct: 181 ISDLAANRKQTLMFSATFAGRIITLAERMMNDPQRIAIETGHSTNTDITQTLHWTDG-FE 239 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 K LL L ++D + ++F + +++ L L + G SV A+HG + Q R + L Sbjct: 240 HKKKLLTHWLSAED-VDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLR 298 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 + +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL Sbjct: 299 SIREGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLA 358 Query: 350 AKEDIKHIDAIEKLIEKKVD 369 + I A+E ++ +++ Sbjct: 359 TYRERGKIRALEDFLDARLN 378 >gi|330811536|ref|YP_004355998.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379644|gb|AEA70994.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 487 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 140/374 (37%), Positives = 223/374 (59%), Gaps = 10/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ D G+ TPIQ + + L D G AQTGTGKTA+F++ ++T Sbjct: 100 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQ 159 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 160 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 219 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG + ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 220 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 279 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + +E +E A + K LL Sbjct: 280 SERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASENVEQHIYAVAG--ADKYKLL 337 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 338 YNLV-NDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 396 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 397 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 456 Query: 356 HIDAIEKLIEKKVD 369 + +IE L+ KK++ Sbjct: 457 QLPSIEALLGKKIN 470 >gi|169633001|ref|YP_001706737.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii SDF] gi|169151793|emb|CAP00614.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii] Length = 383 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K NL + L+GG+ F+ Q K Sbjct: 65 LLNNPVQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L+ D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ ++ +L P +E+ T +E Q K L Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ ++ + +IF N++ V L L+K G+ V + G I Q R+K+L FK+G Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 301 KHNIMIATDVAGRGIHVEGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 361 FYLPEIEKAIGKKL 374 >gi|257487412|ref|ZP_05641453.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320325825|gb|EFW81886.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea str. B076] gi|320327257|gb|EFW83271.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea str. race 4] gi|330879451|gb|EGH13600.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea str. race 4] gi|330988315|gb|EGH86418.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 482 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 95 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 332 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 333 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 452 QLPAIEEKLGRKI 464 >gi|327264401|ref|XP_003217002.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Anolis carolinensis] Length = 820 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 151/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 T RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 TNQKPDTDEAEDPDKMMANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A + V KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAISFVTKEDSAVFYDLKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908] Length = 491 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 215/369 (58%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINKH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K+ I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 APEKS-IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|126175005|ref|YP_001051154.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|125998210|gb|ABN62285.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 427 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 206/362 (56%), Gaps = 10/362 (2%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LG+ ++ + + YV PTP+Q TIP VL DV A TG+GKTA+F +P+L L + Sbjct: 14 LGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVE 73 Query: 66 GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120 + + R L+L PTRELA QVAD+F Y + N L + GG+ AQ + L Sbjct: 74 AKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GADVL+ TPGR+LD + + +N + LV+DEADRML +GF + + +P +QT Sbjct: 134 AGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQT 193 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +E+++++ L +P +E S TI + K ALL L++ Sbjct: 194 LLFSATFPEEVRELTAKLLNDP--LEYQFQSEQESTIHQRVITV--NRPMKTALLAHLIK 249 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF + K +L L K+G S HG+ Q +R ++L FK G I +++ Sbjct: 250 -EHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ ED H I Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368 Query: 361 EK 362 EK Sbjct: 369 EK 370 >gi|110638219|ref|YP_678428.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC 33406] gi|110280900|gb|ABG59086.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC 33406] Length = 413 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 223/373 (59%), Gaps = 4/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L+P + ++ +AG+ +PT IQ K+IP +L DV IAQTGTGKTA+FV+P+L Sbjct: 1 MKFESYDLAPGIKKSLAEAGFNRPTDIQFKSIPPILAGEDVLAIAQTGTGKTAAFVIPVL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 T++ ++ L++ PTRELA Q+++ F+K G L + GG+ EAQ Sbjct: 61 NTLINVKKSEHTDISCLVMAPTRELAVQISEVFKKIGAYTRLRTVCITGGVEQEAQIAAA 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D+L+ TPGR+ D + + + ++ILV+DEAD MLD+GFI IQ++ +P Q Sbjct: 121 DYGIDILVATPGRMFDLIYQKHIKITRVKILVLDEADHMLDLGFIKDIQDVKKFLPARHQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSAT+ +E++K++ + ++NP RI++ ++ I H + K L++LL Sbjct: 181 TLFFSATINEEIKKLAYSLVKNPIRIQIAPKDRVSKNITHS--VAFIGMDDKRFFLERLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + K I+F + + ++E+ G +HG +Q++R + FK GT+ ++ Sbjct: 239 KEHPESKV-IVFVRTQVRADRVQAAMERVGLKSVTMHGGKEQQARDAAMDAFKNGTVHVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D++ARG+DI V +V N+D+P AENY+HR+GRTGR G A + + E+ +D Sbjct: 298 IATDISARGIDIAGVEYVVNYDMPEVAENYVHRVGRTGRGVSKGFAISFCSMEEKPVLDE 357 Query: 360 IEKLIEKKVDWLN 372 +E+ + K+++ + Sbjct: 358 VEEFLGKEINVIE 370 >gi|169795350|ref|YP_001713143.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AYE] gi|184158781|ref|YP_001847120.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ACICU] gi|215482884|ref|YP_002325087.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii AB307-0294] gi|239502877|ref|ZP_04662187.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB900] gi|260554464|ref|ZP_05826685.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC 19606] gi|332850462|ref|ZP_08432782.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150] gi|332871914|ref|ZP_08440326.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113] gi|332875150|ref|ZP_08442983.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059] gi|169148277|emb|CAM86142.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii AYE] gi|183210375|gb|ACC57773.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU] gi|193077811|gb|ABO12683.2| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii ATCC 17978] gi|213986779|gb|ACJ57078.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii AB307-0294] gi|260411006|gb|EEX04303.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC 19606] gi|332730733|gb|EGJ62044.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150] gi|332731128|gb|EGJ62429.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113] gi|332736594|gb|EGJ67588.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059] Length = 383 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K NL + L+GG+ F+ Q K Sbjct: 65 LLNNPVQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L+ D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ ++ +L P +E+ T +E Q K L Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ ++ + +IF N++ V L L+K G+ V + G I Q R+K+L FK+G Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 301 KHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 361 FYLPEIEKAIGKKL 374 >gi|186684628|ref|YP_001867824.1| DEAD/DEAH box helicase domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467080|gb|ACC82881.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC 73102] Length = 509 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 135/349 (38%), Positives = 207/349 (59%), Gaps = 5/349 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LG+S + V + G+ +PT IQ++ IP +L DV G +QTGTGKTA+F LP+L Sbjct: 3 LSFQELGISQERVAQLEKIGFTEPTNIQVQAIPQLLGGRDVVGQSQTGTGKTAAFSLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ + V+ ++L PTRELA QV D ++ + L V + GG + Q +L Sbjct: 63 ERLDINQKAVQ---AIVLTPTRELAMQVHDAIAQFIGDEGLRVLAIYGGQSIDRQMLQLR 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR++D +RG L ++ ++ V+DEAD ML MGFI + I S P RQT Sbjct: 120 RGVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPVDRQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM ++ + FL++P + V P + I ++K A LQ +L+ Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRHWTKAKA-LQPILE 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + +IF ++ L L+ G SV HG++ Q++R ++L F+ ++ +V Sbjct: 239 MEDP-ETALIFVRTRRTAAELTSQLQGAGHSVDEYHGDLSQQARERLLVRFRNRQVRWVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 A+D+AARGLD+ + HV NFD+P+ E Y+HRIGRTGRAG+ G A +LV Sbjct: 298 ATDIAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLV 346 >gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018] gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017] Length = 491 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 215/369 (58%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K+ I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 APEKS-IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|67477952|ref|XP_654408.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS] gi|56471449|gb|EAL49018.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS] Length = 432 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 151/374 (40%), Positives = 224/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P+V+ V GY KPT IQ +IP+ LQ+ D+ GIAQTG+GKTASF+LPM+ Sbjct: 11 FKDLGLIPEVLKVVEYLGYKKPTRIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMVQH 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L + + R +I+EPTRELAAQV + ++ GK LT LL+GG+ Q+ +L + Sbjct: 71 LLNVKEKNRGFYCIIIEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDVMKQSVQLAK 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 V++ TPGRI+ H K + +IE LVIDEAD++L+M F I + +P R Sbjct: 131 RPQVIVGTPGRIVYHIKNTKGVEESIEKVKFLVIDEADKLLEMDFANEIDYLIEKLPKQR 190 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETI--EHCFVATYAQYSKKCALL 235 T+LFSATM+ +++K+ L +P +I E T +T+ E+CF+ + + L Sbjct: 191 TTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIP----FKYRDGYL 246 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L+ + K IIF + L L + G++ +HG + Q+ R+ L FK G Sbjct: 247 ISILKETEG-KTIIIFTMKCSGCTKLVMMLRQMGYAAIPLHGKMSQQKRLIALEKFKSGK 305 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++VA+D+A+RGLDIP+V V N+D P ++Y+HR+GRT RAG+ G A TLV + I+ Sbjct: 306 RGILVATDVASRGLDIPNVDIVINYDCPLEPKDYVHRVGRTARAGKSGYAITLVTQYSIE 365 Query: 356 HIDAIEKLIEKKVD 369 IE +IEKK++ Sbjct: 366 LYQRIETMIEKKLN 379 >gi|301386366|ref|ZP_07234784.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato Max13] gi|302060652|ref|ZP_07252193.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato K40] gi|302133062|ref|ZP_07259052.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 484 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 97 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 454 QLPAIEEKLGRKI 466 >gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80] gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80] Length = 423 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 216/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADL L P ++ A+ + G+ +PT +Q + IP L DV A TGTGKTA+FV+P L Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QVA+ + KN L + + GG+ ++ L Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++ + + L++P ++ +P + I + K LL+++L Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAESPRRERKKISQWY-HRADDMPHKVELLKKILT 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F ++ + +L LEK I G + Q R +S F+EG + +++ Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV D + + Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361 Query: 361 EKLIEKKV 368 E+ I+++V Sbjct: 362 ERYIKEEV 369 >gi|37681367|ref|NP_935976.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016] gi|39931700|sp|Q7MGP7|RHLB_VIBVY RecName: Full=ATP-dependent RNA helicase rhlB gi|37200119|dbj|BAC95947.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016] Length = 435 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 225/383 (58%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL+P+VV + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T +GR + PR +I+ PTRELA Q+ ++ E + + AL GG ++ Q Sbjct: 71 LLTTHAHEGRQPTQ-PRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLA 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+ G DVLI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAP 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 ++ L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 QERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R KIL F +G+ Sbjct: 248 QTLIE-EEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGS 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + L+VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + ++ Sbjct: 307 VDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE+ IE + + D S+L Sbjct: 367 NLPAIEEYIEHTIPVSDYDSSAL 389 >gi|331008996|gb|EGH89052.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 482 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 95 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 332 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 333 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 452 QLPAIEEKLGRKI 464 >gi|330899540|gb|EGH30959.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 483 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 96 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDRQLKQ 215 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 453 QLPAIEEKLGRKI 465 >gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens NRL30031/H210] gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens NRL30031/H210] Length = 463 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 214/369 (57%), Gaps = 13/369 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64 Query: 63 LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ K LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRH--KNRLLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAN-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIGRT G A T + + Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRT------GIAITFAEVNEYVKVHK 354 Query: 360 IEKLIEKKV 368 IEK I +K+ Sbjct: 355 IEKYINRKL 363 >gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58] gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58] Length = 458 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 226/392 (57%), Gaps = 13/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LS ++ + GY + TPIQ +++PL+LQ HD+ A+TG+GKTA+F L +L+ Sbjct: 6 FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + L+L PTRELA QVA + + N+ V L GG+P+ Q LE Sbjct: 66 LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI +H +G L+++ + LV+DEADRMLDMGF I I +P RQTL Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D ++K+++ F+++P+++ V + + ++ + F Q L Q + Sbjct: 183 LFSATYPDGIEKLAKTFMRDPRQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQHFRP 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + + FC ++ L +L+ Q S A+HG+++QR R ++L+ F + ++VA Sbjct: 243 QSS----VAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N ++ E +IHRIGR+GRAG G A +LVA + AIE Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358 Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388 L ++ + W L L PP+ + IA Sbjct: 359 DLQKQPLAWYALGQLKASPEPLLPPMSTLCIA 390 >gi|328948067|ref|YP_004365404.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489] gi|328448391|gb|AEB14107.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM 2489] Length = 534 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 226/371 (60%), Gaps = 8/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + L ++ + AGYV TP+Q + + L+ D+ +QTGTGKTA+++ ++ Sbjct: 1 MKFTEFSLHESLLQGIEGAGYVDCTPVQEQVLKSSLEGRDLYVQSQTGTGKTAAYLTSVI 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L +G + + + L++ PTRELA QV + +K K +L A GG+ ++ Q L Sbjct: 61 QELLTRGESAGK--KALVMVPTRELAVQVQEEAQKLAKFTSLKCASFYGGVGYDKQVASL 118 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-- 177 ++G D++I TPGR++D + ++ ++++ LVIDEADRM DMGF P ++ + ++P + Sbjct: 119 KKGVDIMIGTPGRVIDLNHGNQMDLSSVAFLVIDEADRMFDMGFYPDLRTLIKVLPSSEQ 178 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSAT+ ++ ++ + +NP I + + T + I + K LL Sbjct: 179 RQTMLFSATLNSYVKNLAWEYTRNPAEITIAAENITVDEIAQELF--HVSSDDKMKLLLG 236 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ S + ++ I+FCN KK+ + L+ GF I G++ Q+ R+ I+ FK G I+ Sbjct: 237 II-SHEKPESLIVFCNTKKSCEIVAKRLKMNGFESEFIIGDLPQKKRLTIMDKFKAGAIK 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARG+D+ D+ V N+D+PN AENY+HRIGRT RAG+ GKAFT +++D+ + Sbjct: 296 CLVATDVAARGIDVNDLAMVINYDLPNEAENYVHRIGRTARAGKSGKAFTFCSEQDVYSL 355 Query: 358 DAIEKLIEKKV 368 IE+ IEK + Sbjct: 356 PPIERYIEKSI 366 >gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica] gi|74660195|sp|Q6CH58|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3 gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica] Length = 480 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 220/371 (59%), Gaps = 13/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ + + + KPTPIQ ++IP L+ D+ G+AQTG+GKTA+F +P+L Sbjct: 66 FKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQS 125 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + P+ L +L PTRELA Q+++ FE G L A+++GG+ Q L Sbjct: 126 LYEN------PQPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVAL 179 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + V++ TPGR++DH K + ++ LV+DEADR+LDM F P + I ++P R Sbjct: 180 SKKPHVIVATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQR 239 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATMT +++K+ L +P R+ V+T TA+ + V + + K L L Sbjct: 240 NTYLFSATMTSKVEKLQRASLVDPVRVAVSTKYQTADNLLQYMV--FCPFKHKDTHLVYL 297 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S++ + IIF K + + L G+ +HG++ Q +R+ L+ FK G+ + Sbjct: 298 V-SENAGNSMIIFARTKSDTQRISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNI 356 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RGLDIP V V N+D+P+ +++YIHR+GRT RAGR GK+ LV++ D++ Sbjct: 357 LIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYL 416 Query: 359 AIEKLIEKKVD 369 IE + KK+D Sbjct: 417 RIEGALGKKLD 427 >gi|330950967|gb|EGH51227.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae Cit 7] Length = 483 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 96 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 453 QLPAIEEKLGRKI 465 >gi|327404500|ref|YP_004345338.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320008|gb|AEA44500.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM 16823] Length = 407 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 128/351 (36%), Positives = 216/351 (61%), Gaps = 4/351 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+D +S ++ + G+ +PT IQ K I +L DV GIAQTGTGKTA+F +P++ Sbjct: 1 MRFSDYPISDEIKKQLEVLGFKRPTDIQFKAISPILNGEDVFGIAQTGTGKTAAFAIPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R + + PR ++L PTRELA Q+ D FE G N+ + ++GG+ + Q ++L+ Sbjct: 61 HKLSTSRPKSKSPRCIVLAPTRELAEQIKDAFESIGVGSNIRITAILGGLEQDKQIQELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQ 179 RG DV++ TPGR+ D ++G L +++I+ LV+DEADRMLD+GF ++ I L P RQ Sbjct: 121 RGTDVIVATPGRVFDLRSQGHLSLDSIQFLVLDEADRMLDLGFAHDMKAIHKLSPQRNRQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+ FSAT+ +++ ++ + +++ RI+++ ++ +EH A + K L+ ++ Sbjct: 181 TMFFSATIDKKIKALAYDLVRDAIRIQISPDDPVSKNVEHG--AITVEMDDKRFFLENII 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + K ++F K + ++E+ G A+HG I+Q+ R +L FK G +++ Sbjct: 239 KEYEEFKY-VVFVRTKVRCERVVAAMERVGIHSEALHGGIEQKDRFAVLERFKSGENKIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 + +D+AARG+DI V +V N+D+P++ E Y+HRIGRTGR G+A + + Sbjct: 298 ITTDVAARGIDIQGVDYVINYDLPDQPEQYVHRIGRTGRGENKGQALSFCS 348 >gi|298208537|ref|YP_003716716.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Croceibacter atlanticus HTCC2559] gi|83848460|gb|EAP86329.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Croceibacter atlanticus HTCC2559] Length = 445 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 154/415 (37%), Positives = 226/415 (54%), Gaps = 14/415 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LSP + A+ + G V PTPIQ ++ P+++ DV GIAQTGTGKT ++ LP+L + Sbjct: 5 FKDLNLSPSLQKALDELGIVHPTPIQEESFPVIMSGRDVVGIAQTGTGKTYAYALPVLRL 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L R PR LI+ PTREL QV EK ++ + + GG Q K + G Sbjct: 65 LPYSRQV--NPRALIIVPTRELVVQVVSEIEKLCTLNDMRILGVYGGTNINTQKKAVVEG 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVL+ TPGR+ D L + NI+ LVIDE D MLD+GF + NI ++P Q +L Sbjct: 123 CDVLVATPGRLYDLAVSHVLQLKNIQKLVIDEVDVMLDLGFRFQLVNILDILPKKHQNIL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATMTDE+ + F NP +I V + I+ + Y K L+ LL+ Sbjct: 183 FSATMTDEVSSMISEFFNNPIKISVAKSGTPLVNIQQ-YRYNVPNYYTKQNLIIHLLEDV 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +T + +IF K+ + + ++ + F IH N Q R+ + F+ G ++M+ Sbjct: 242 ETYEKTLIFVPNKR-IADRLFAVVDKTFPDQASVIHSNKTQNYRLNSIEAFETGEHRIMI 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARGLDI D+ HV N D P+ ENY+HRIGRTGRA + G A L ++ +++ + I Sbjct: 301 ATDVMARGLDIDDISHVINMDTPSYPENYLHRIGRTGRAEKKGTALVLTSESEVEWLKTI 360 Query: 361 EKLIEKKVDW--LNGDLS---SLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 E+L+E KVD + D+ L P ++ + +N +K P K F +K Sbjct: 361 EELMETKVDTIEMTNDVEISKELAPEEQQKPVEIYNPLKKE---PSKGKAFHEKK 412 >gi|331015254|gb|EGH95310.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 484 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 97 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 454 QLPAIEEKLGRKI 466 >gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera] Length = 797 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 207/373 (55%), Gaps = 25/373 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + LS +++ AV AGY P+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPMLT Sbjct: 308 WVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 367 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ D K+ + V ++GG E Q Sbjct: 368 ISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGF 427 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 ++ +G +V+I TPGR++D R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 428 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 487 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T + I Sbjct: 488 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQH 547 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + + S+K LQ+LL K I+F N KK+ NL L+K G+ V +HG Sbjct: 548 VIMM--KESEKMFKLQKLLDELGD-KTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKS 604 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+A RG+DIPDV HV N+D+P E Y HRIGRTGRAG Sbjct: 605 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 664 Query: 341 RHGKAFTLVAKED 353 + G A T + D Sbjct: 665 KTGVATTFLTLHD 677 >gi|168017610|ref|XP_001761340.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687346|gb|EDQ73729.1| predicted protein [Physcomitrella patens subsp. patens] Length = 589 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 144/391 (36%), Positives = 220/391 (56%), Gaps = 19/391 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L P + + Y KPTP+Q IP+ L D+ AQTG+GKTA+F P++ Sbjct: 143 FAEIDLGPALNENIRRCKYTKPTPVQRYAIPISLHGRDLMACAQTGSGKTAAFCFPIIAG 202 Query: 63 LEK----GRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + GR+R +P LIL PTREL+ Q++D +K+ + V + GG P Q Sbjct: 203 IMRNTPPGRSRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIKVVVCYGGAPVHNQ 262 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +++ERG D+L+ TPGR+ D R ++ ++ + L +DEADRMLDMGF P I+ I + Sbjct: 263 LREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQMD 322 Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT E+Q+++ +FL N + V S+ E I Y Q S K Sbjct: 323 MPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQ--RVEYVQDSDK 380 Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 ++L L+ +Q + ++F KK +L L + GF IHG+ Q+ R Sbjct: 381 RSMLMDLIHAQSALAPPGQQSLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQERE 440 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 L +F+ G ++VA+D+AARGLDIP V HV NFD+P+ ++Y+HRIGRTGRAG+ G A Sbjct: 441 HALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVA 500 Query: 346 FTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376 ++D ++ +L+ + + G L+ Sbjct: 501 TAFFNEKDQSLARSLAELMTESSQEVPGWLT 531 >gi|156549439|ref|XP_001603249.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia vitripennis] Length = 795 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 139/354 (39%), Positives = 214/354 (60%), Gaps = 4/354 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G ++ ++ Y +PTPIQ ++IP+ L D+ GIA+TG+GKTA+FV PML Sbjct: 257 FGHFGFDDSLIKSIRKHEYTQPTPIQAQSIPVALSGRDLIGIAKTGSGKTAAFVWPMLVH 316 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + +K P LIL PTREL+ Q+ +K+GK YN+ V GG Q+K LE Sbjct: 317 IMDQKELDSGDGPIGLILAPTRELSQQIYHEAKKFGKVYNIRVCCCYGGGSKWEQSKALE 376 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA++++ TPGRI+D ++ + LV+DEADRM DMGF P +++I + V RQT Sbjct: 377 SGAEIVVATPGRIIDLVKMKATNLSRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 436 Query: 181 LLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT ++K++ + L +P RI + + + + +H V Y + K L Q + Sbjct: 437 LLFSATFKKRIEKLARDALTDPIRIVQGDVGEANTDVTQHVIV-FYKNPTGKWTWLNQNI 495 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + +IF +K N L ++L+ + + V +HG++DQ R K++++FK+ T+ ++ Sbjct: 496 VEYLSSGSLLIFVTKKLNAEELANNLKLKEYEVLLLHGDMDQVERNKVITSFKKKTVSIL 555 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TLV ++D Sbjct: 556 VATDVAARGLDIPHIRTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKD 609 >gi|63255030|gb|AAY36126.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 485 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 98 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 157 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 158 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 217 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 218 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 277 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 278 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 335 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 336 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 394 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 395 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 454 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 455 QLPAIEEKLGRKI 467 >gi|213967088|ref|ZP_03395237.1| atp dependent rna helicase [Pseudomonas syringae pv. tomato T1] gi|213927930|gb|EEB61476.1| atp dependent rna helicase [Pseudomonas syringae pv. tomato T1] Length = 486 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 99 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 158 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 159 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 218 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 219 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 278 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 279 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 336 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 337 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 395 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 396 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 455 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 456 QLPAIEEKLGRKI 468 >gi|148244979|ref|YP_001219673.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius okutanii HA] gi|146326806|dbj|BAF61949.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius okutanii HA] Length = 608 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 151/371 (40%), Positives = 227/371 (61%), Gaps = 14/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS ++ + GY P+PIQ + I +L D+ G AQTGTGKTA+FVLP+L Sbjct: 14 FERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLL-- 71 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 +K + P+ LIL PTRELA QV++ + Y + V + GG ++ Q + L+R Sbjct: 72 -DKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKR 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++ TPGR++DH + L ++N++ V+DEAD ML MGFI I+ I +P RQ Sbjct: 131 GVHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIA 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239 LFSATM + ++K+++ FL PK I++ T + TA TI ++C V S K L ++L Sbjct: 191 LFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGL---SNKLEALTRIL 247 Query: 240 QSQ--DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D M IIF K L L +GFS AI+G+I Q R +I++++K+G I Sbjct: 248 EVTVFDAM---IIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKID 304 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARGLD+ + HV N+D+P AE+Y+HRIGRTGRAGR G+A V+ + + + Sbjct: 305 ILIATDIAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRERRML 364 Query: 358 DAIEKLIEKKV 368 + IE + +K+ Sbjct: 365 NTIEHVTRQKI 375 >gi|302188406|ref|ZP_07265079.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae 642] Length = 483 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 96 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 453 QLPAIEEKLGRKI 465 >gi|289628603|ref|ZP_06461557.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647202|ref|ZP_06478545.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi str. 2250] gi|330867826|gb|EGH02535.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 482 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 95 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 332 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 333 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 452 QLPAIEEKLGRKI 464 >gi|269468447|gb|EEZ80112.1| hypothetical protein Sup05_1361 [uncultured SUP05 cluster bacterium] Length = 461 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 148/362 (40%), Positives = 214/362 (59%), Gaps = 9/362 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ L L P ++ + GY TPIQ ++P +L DV G +TG+GKTA+F L +L Sbjct: 5 DFSSLDLHPDLLKNLATLGYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQ 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120 L+ + ++++L PTRELA QVA K + +N+ V L GG PF Q LE Sbjct: 65 KLD---VKSFKAQSIVLCPTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGRI +H +G L + +I LV+DEADRMLDMGF I I +P RQT Sbjct: 122 HGVHIVVGTPGRIEEHLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +E+ ++E +QNP +E PS+ E TI+ F + + AL +LL Sbjct: 182 LLFSATFPNEIASIAERVMQNPTMVEA--PSTHEESTIKQYFYKANSADDRMTAL--RLL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ ++ +IFCN K + ++ L GF AIHG++DQR R + L F ++ ++ Sbjct: 238 LAKHKPESVLIFCNTKIDTQDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V NF++ + E ++HRIGRTGRAGR G A TL + +DA Sbjct: 298 VATDVAARGLDIDALDMVVNFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDA 357 Query: 360 IE 361 +E Sbjct: 358 LE 359 >gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella veroralis F0319] gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella veroralis F0319] Length = 573 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 221/373 (59%), Gaps = 8/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L+ KV+ A+ D + K TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFEDLDLNDKVLDALYDMRFDKCTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116 + L G +I+ PTRELA Q+ + + N VA+ G G ++ + Sbjct: 61 SKLADGGYPESAINCVIMSPTRELAQQIDQAMQGFAYYLNGVSCVAVYGGNDGNRYDQEL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L GADV+I TPGR + H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 KSLSLGADVVIATPGRFISHLSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPN 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 T QT++FSATM +++++++ L+NP I++ S AE I Y ++K +L+ Sbjct: 181 TCQTIMFSATMPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYE--TQKMGILK 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + + + MK IIF K+ V + +L ++ + +H ++DQ R I+ FK G + Sbjct: 238 DVFKGGN-MKRVIIFSGSKQKVKRIAGALSRKHINCGEMHSDLDQEQRNDIMFKFKSGQV 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ +RG+DI D+ V N+DVP+ E+Y+HRIGRT RA G A TLV +DI Sbjct: 297 DVLVATDIVSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARADHDGTAITLVNADDIYF 356 Query: 357 IDAIEKLIEKKVD 369 IE + K+++ Sbjct: 357 FQQIESFLGKEIE 369 >gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC 33656] gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC 33656] gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM 17629] gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1] Length = 530 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 218/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L+PK++ + D G+ + TPIQ + IP VL DV G AQTGTGKTA+F +P + Sbjct: 6 FDELELNPKILRGIKDMGFEEATPIQAQGIPAVLSGRDVIGQAQTGTGKTAAFGIP---V 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 LE A + +IL PTRELA QVAD K K + + V + GG Q K L+ Sbjct: 63 LESVDASSHKTQVIILSPTRELAIQVADEIRKLAKYMHGVKVLPVYGGQDISRQIKALKG 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH R + ++++ +V+DEAD ML+MGF I+ + +P QT+ Sbjct: 123 GVQIIIGTPGRLMDHLRRKTIRPDHVKTIVLDEADEMLNMGFREDIETVLEYLPQEHQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ + + I++ T I+ + + K +L +LL Sbjct: 183 LFSATMPKPILEITRKYQHDAINIKIVKKELTVANIDQYYYDV--KRKDKIDVLTRLLDY 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K ++FCN KK V L + L +G+S +HG++ Q R +++ NF+ G +++A Sbjct: 241 YNP-KLSLVFCNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILIA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR GKAF+ V +++ + I+ Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRCGKAFSFVKGKEVYKLKDIQ 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RYCKTKI 366 >gi|170756598|ref|YP_001781574.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str. Okra] gi|169121810|gb|ACA45646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum B1 str. Okra] Length = 376 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 147/368 (39%), Positives = 220/368 (59%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS ++ + ++PTPIQ ++I L+ +DV AQTGTGKT +F+LPM Sbjct: 2 IKFEELGLSDSIIDVLKKQRIIEPTPIQKESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + LI+ PTRELA Q+ + K + +L + GG +Q KKL+ Sbjct: 62 ---ENISPDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR+LDH NR L +++ LV+DEAD ML MGF +++I P RQT Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++ +++PK I + T + I+ + T + +K L ++L Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ IIFC K+ V L +L K+G++ +HG+I Q R +I+ +FK IQ ++ Sbjct: 237 EENPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HVFN+D+P AE+YIHRIGRTGRAG G F VA +D + + I Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355 Query: 361 EKLIEKKV 368 E+ I+ K+ Sbjct: 356 EREIKFKI 363 >gi|158514833|sp|A3LSN3|DRS1_PICST RecName: Full=ATP-dependent RNA helicase DRS1 Length = 741 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 152/398 (38%), Positives = 232/398 (58%), Gaps = 19/398 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS V+ + GY KP+PIQ +IP+ L D+ A TG+GKTA++++P++ Sbjct: 224 FQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIER 283 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L ++V R ++L PTRELA QV D +K G+ N L L +GG+ Q ++L+ Sbjct: 284 LLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKS 343 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179 DV+I TPGR++DH N ++++E+LVIDEADRMLD GF + I SL+P RQ Sbjct: 344 RPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKRQ 403 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++Q + + LQ P RI ++ P + A + FV + K ALL QLL Sbjct: 404 TLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRKRDHLKPALLFQLL 463 Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D + ++F ++K++ L L G V +HG++ Q R+ +++FK+ + Sbjct: 464 KKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLIVP 523 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA------- 350 +++ +DLAARGLDIP + V N+D+P E Y+HR+GRT RAGR G + + V Sbjct: 524 VLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSDRN 583 Query: 351 --KEDIKHIDAIE---KLIEKKVDWLNGDLSSLNPPLE 383 K+ IK ++ E K + + +DW+ D+ LN +E Sbjct: 584 IVKDAIKSLEGGEVKGKAVSRNIDWV--DVEQLNKIVE 619 >gi|217972736|ref|YP_002357487.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|217497871|gb|ACK46064.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 427 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 206/362 (56%), Gaps = 10/362 (2%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LG+ ++ + + YV PTP+Q TIP VL DV A TG+GKTA+F +P+L L + Sbjct: 14 LGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVE 73 Query: 66 GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120 + + R L+L PTRELA QVAD+F Y + N L + GG+ AQ + L Sbjct: 74 AKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GADVL+ TPGR+LD + + +N + LV+DEADRML +GF + + +P +QT Sbjct: 134 AGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQT 193 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +E+++++ L +P +E S TI + K ALL L++ Sbjct: 194 LLFSATFPEEVRELTAKLLNDP--LEYQFQSEQESTIHQRVITV--NRPMKTALLAHLIK 249 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF + K +L L K+G S HG+ Q +R ++L FK G I +++ Sbjct: 250 -EHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ ED H I Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368 Query: 361 EK 362 EK Sbjct: 369 EK 370 >gi|298485798|ref|ZP_07003877.1| ATP-dependent RNA helicase RhlB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159824|gb|EFI00866.1| ATP-dependent RNA helicase RhlB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 484 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 97 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 454 QLPAIEEKLGRKI 466 >gi|293609547|ref|ZP_06691849.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827999|gb|EFF86362.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122816|gb|ADY82339.1| ATP-dependent RNA helicase RhlB [Acinetobacter calcoaceticus PHEA-2] Length = 389 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 11 FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K NL + L+GG+ F+ Q K Sbjct: 71 LLNNPIQEQRFRGE-PRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKK 129 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L+ D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 130 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 189 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ ++ +L P +E+ T +E Q K L Sbjct: 190 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 247 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ ++ + +IF N++ V L L+K G+ V + G I Q R+K+L FK+G Sbjct: 248 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYRVGMLSGEIAQDKRLKMLEQFKQG 306 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 307 KHNIMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDA 366 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 367 FYLPEIEKAIGKKL 380 >gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750] gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750] Length = 571 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 223/369 (60%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + +++ AV D G+ + +PIQ + IP VL+ DV G AQTGTGKTA++ +PML Sbjct: 1 MKFDELNIDERILRAVEDMGFEETSPIQTQAIPAVLEGIDVIGQAQTGTGKTAAYSIPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 +K V+ P+ ++L PTRELA QVA+ K K ++ V + GG Q K L Sbjct: 61 ---QKINPDVKKPQAIVLCPTRELAVQVAEEIRKLAKYMSDIKVLPVYGGQEIVRQIKSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G +++ TPGR++DH R + +++ ++++DEAD MLDMGF ++ I + P RQ Sbjct: 118 KAGVQIIVGTPGRVMDHMRRKTVKFDSVSMVILDEADEMLDMGFREDMETILTETPEERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + +++ F ++ + I+V T I+ + + K +L +L+ Sbjct: 178 TVLFSATMPKPIMEIARKFQKDARIIKVVRKELTVSNIDQFYYEVRPK--NKTEILSRLI 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + K ++FCN K+ V L L+ +G+ IHG++ Q+ R +++ +F+ G +++ Sbjct: 236 DIYNP-KLSVVFCNTKRQVDELISELKGRGYFADGIHGDMKQQQRDRVMDDFRSGKTEIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ V VFN+D+P E Y+HRIGRTGRAG+ G A + ++ ++ + Sbjct: 295 IATDVAARGIDVDGVDIVFNYDLPQDEEYYVHRIGRTGRAGKSGLALSFISGREVYKLKD 354 Query: 360 IEKLIEKKV 368 IE+ + K+ Sbjct: 355 IERYCKTKI 363 >gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba] gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba] Length = 494 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 24 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 84 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIKKN 139 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 140 PQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 199 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++K+++ L+NP +I + + T I F ++ + LL +Q Sbjct: 200 FSATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERSEAIMHLLDTQ 257 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K+ I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 258 APEKS-IVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 316 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 317 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 376 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 377 EIDSEIELF 385 >gi|114564377|ref|YP_751891.1| ATP-dependent RNA helicase DbpA [Shewanella frigidimarina NCIMB 400] gi|114335670|gb|ABI73052.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 467 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 149/385 (38%), Positives = 228/385 (59%), Gaps = 13/385 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P+++ + G+ T IQ +++P +L DV G A TG+GKTA+F L +L Sbjct: 13 FTSLKLKPELLENLQTMGFESMTQIQAESLPPILAGEDVIGQAMTGSGKTAAFGLGLLNK 72 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ R R++ T++L PTRELA QVA + + +N+ V L GG+P Q LE Sbjct: 73 LDVKRFRIQ---TMVLCPTRELADQVAKDIRTLARGIHNVKVLTLCGGVPMGPQVGSLEH 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +R +L ++N+ +L++DEADRML+MGF +I I + P RQTL Sbjct: 130 GAHIIVGTPGRIVDHLDRNRLDLSNMNMLILDEADRMLEMGFQQHIDQIIAAAPRERQTL 189 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D++Q +++ L P ++V TI+ F + AL LL Sbjct: 190 LFSATFPDQIQAIADQILYKPVMVKVEAKHDNL-TIDQHFYRIEDNQGRLEALRLLLLDK 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN K+ + SL + GFSV A+HG+++QR R ++L F + +++VA Sbjct: 249 QP--ESAVVFCNTKRETQQVADSLHEFGFSVLALHGDLEQRDRDQMLLQFANRSARILVA 306 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI ++ VFN+ + E +IHRIGRTGRAG G A+T +ED + IE Sbjct: 307 TDVAARGLDIDELDAVFNYHIAYDTEVHIHRIGRTGRAGSSGAAYTFFGEEDGYKMAMIE 366 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKID 386 + + K V +S PP+ ++ Sbjct: 367 EAMNKDV------VSEPLPPMSALN 385 >gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1 [Anolis carolinensis] Length = 445 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 224/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ +V+C D G+ PT IQ+++IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 18 FKELGVT-EVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPILQ 76 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R L+L PTRELA Q+++ FE G + + A+++GGI AQ+ L + Sbjct: 77 ALLETPQRFF---ALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAK 133 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V+I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 134 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 193 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L++P + V++ T E ++ +V +++ K + L +L Sbjct: 194 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYVFIPSKF--KDSYLVYIL- 250 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG ++Q R+ L+ FK +++ Sbjct: 251 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKARSVLL 310 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GK+ T V + D++ I Sbjct: 311 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 370 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 371 EHLIGKKL 378 >gi|150864695|ref|XP_001383630.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal subunits [Scheffersomyces stipitis CBS 6054] gi|149385951|gb|ABN65601.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal subunits [Scheffersomyces stipitis CBS 6054] Length = 672 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 152/398 (38%), Positives = 232/398 (58%), Gaps = 19/398 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS V+ + GY KP+PIQ +IP+ L D+ A TG+GKTA++++P++ Sbjct: 161 FQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIER 220 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L ++V R ++L PTRELA QV D +K G+ N L L +GG+ Q ++L+ Sbjct: 221 LLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKS 280 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQ 179 DV+I TPGR++DH N ++++E+LVIDEADRMLD GF + I SL+P RQ Sbjct: 281 RPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKRQ 340 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++Q + + LQ P RI ++ P + A + FV + K ALL QLL Sbjct: 341 TLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRKRDHLKPALLFQLL 400 Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D + ++F ++K++ L L G V +HG++ Q R+ +++FK+ + Sbjct: 401 KKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLIVP 460 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA------- 350 +++ +DLAARGLDIP + V N+D+P E Y+HR+GRT RAGR G + + V Sbjct: 461 VLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSDRN 520 Query: 351 --KEDIKHIDAIE---KLIEKKVDWLNGDLSSLNPPLE 383 K+ IK ++ E K + + +DW+ D+ LN +E Sbjct: 521 IVKDAIKSLEGGEVKGKAVSRNIDWV--DVEQLNKIVE 556 >gi|226949308|ref|YP_002804399.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A2 str. Kyoto] gi|226844168|gb|ACO86834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A2 str. Kyoto] Length = 376 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 220/368 (59%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA+LGLS ++ + ++PTPIQ ++I + +DV AQTGTGKT +F+LPM Sbjct: 2 IKFAELGLSDSIIDVLKKQRIIEPTPIQEESIMFIKNGNDVIAEAQTGTGKTLAFLLPMF 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + LI+ PTRELA Q+ + K + +L + GG +Q KKL+ Sbjct: 62 ---ENISPDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR+LDH NR L +++ LV+DEAD ML MGF +++I P RQT Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++ +++P+ I + T + I+ + T + +K L ++L Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPRLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ IIFC K+ V L +L K+G++ +HG+I Q R +I+ +FK IQ ++ Sbjct: 237 EENPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HVFN+D+P AE+YIHRIGRTGRAG G F VA +D + + I Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLSII 355 Query: 361 EKLIEKKV 368 E+ I+ K+ Sbjct: 356 EREIKFKI 363 >gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434] gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434] Length = 557 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 210/370 (56%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+ P++ A+ D G + P PIQ T+P+ L DV G A+TGTGKT F +P+L Sbjct: 62 FADFGVEPEISQALADKGIIHPFPIQALTLPVALDGRDVIGQAKTGTGKTLGFGIPLLMD 121 Query: 63 L----EKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 E+G P+ L++ PTRELA QVA + + + + GG +E Q Sbjct: 122 TLGPGEEGWDEDPASGSPQALVVLPTRELAKQVATELAQAAAKRTVRIVQVYGGRAYEPQ 181 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + LE+GA+V++ TPGR++D RG L + ++ +V+DEAD MLD+GF+P ++ I + Sbjct: 182 IEALEKGAEVVVGTPGRLIDLMERGVLSLEHVTTVVLDEADEMLDLGFLPDVEKILARTR 241 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 RQT+LFSATM + ++ ++ P I P + T+ Y ++ K + Sbjct: 242 PDRQTMLFSATMPGAVVALARRYMSKPTHIRAQDPGDESMTVTSVKQVVYRTHALNKVEV 301 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + IIF K+ + L +GF+ A+HG++ Q +R + L F+ G Sbjct: 302 VSRILQARGRGRT-IIFTRTKRTAARVAEDLGSRGFATAALHGDLGQGAREQALRAFRHG 360 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ P + Y+HRIGRTGRAG G A T V +D+ Sbjct: 361 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGHSGTAVTFVDWDDV 420 Query: 355 KHIDAIEKLI 364 I K + Sbjct: 421 PRWRLIAKAL 430 >gi|161486737|ref|YP_234164.2| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae B728a] Length = 483 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 96 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 216 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 453 QLPAIEEKLGRKI 465 >gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo sapiens] Length = 448 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 221/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 19 FKDLGVT-DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 77 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 78 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 134 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I + P R+T Sbjct: 135 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPRDRKT 194 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 195 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 251 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 252 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 311 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 312 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 371 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 372 EHLIGKKL 379 >gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10] gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10] Length = 492 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori HPKX_438_AG0C1] Length = 492 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 213/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSDITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 -APKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|153938593|ref|YP_001391335.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str. Langeland] gi|152934489|gb|ABS39987.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum F str. Langeland] gi|295319364|gb|ADF99741.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum F str. 230613] Length = 376 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 147/368 (39%), Positives = 220/368 (59%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS ++ + ++PTPIQ ++I L+ +DV AQTGTGKT +F+LPM Sbjct: 2 IKFEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMF 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + LI+ PTRELA Q+ + K + +L + GG +Q KKL+ Sbjct: 62 ---ENISPDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR+LDH NR L +++ LV+DEAD ML MGF +++I P RQT Sbjct: 119 NNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E++K++ +++PK I + T + I+ + T + +K L ++L Sbjct: 179 LCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILD 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ IIFC K+ V L +L K+G++ +HG+I Q R +I+ +FK IQ ++ Sbjct: 237 EENPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLI 295 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V HVFN+D+P AE+YIHRIGRTGRAG G F VA +D + + I Sbjct: 296 ATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMI 355 Query: 361 EKLIEKKV 368 E+ I+ K+ Sbjct: 356 EREIKFKI 363 >gi|124430514|ref|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [Mus musculus] gi|148672229|gb|EDL04176.1| mCG18410, isoform CRA_a [Mus musculus] Length = 819 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 392 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 451 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 452 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 511 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 512 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 571 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 572 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 631 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 632 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 686 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 687 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 746 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 747 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 800 Query: 389 QHN 391 QH Sbjct: 801 QHK 803 >gi|115454875|ref|NP_001051038.1| Os03g0708600 [Oryza sativa Japonica Group] gi|75320262|sp|Q53RK8|RH21_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 21 gi|62733557|gb|AAX95674.1| DEAD/DEAH box helicase, putative [Oryza sativa Japonica Group] gi|108710689|gb|ABF98484.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa Japonica Group] gi|108710690|gb|ABF98485.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa Japonica Group] gi|108710691|gb|ABF98486.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa Japonica Group] gi|113549509|dbj|BAF12952.1| Os03g0708600 [Oryza sativa Japonica Group] gi|125545447|gb|EAY91586.1| hypothetical protein OsI_13221 [Oryza sativa Indica Group] gi|125587655|gb|EAZ28319.1| hypothetical protein OsJ_12293 [Oryza sativa Japonica Group] gi|215697317|dbj|BAG91311.1| unnamed protein product [Oryza sativa Japonica Group] Length = 736 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 212/373 (56%), Gaps = 25/373 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +++ L +++ AV AGY +P+PIQ+ +IPL LQ+ DV GIA+TG+GKTA+FVLPML+ Sbjct: 317 WSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 376 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ + K+ + V ++GG E Q Sbjct: 377 ITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGF 436 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+ +G +V+I TPGR+LD R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 437 KIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 496 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T + I Sbjct: 497 NLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 556 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + T + S+K + LQ++L K I+FCN KK+ L+K GF V +HG Sbjct: 557 VIMT--KESEKMSRLQKILTDLGD-KPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGKS 613 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+A RG+DIPDV HV N+++P+ + Y HRIGRTGRAG Sbjct: 614 QEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAG 673 Query: 341 RHGKAFTLVAKED 353 + G A + + E+ Sbjct: 674 KKGLATSFLTLEN 686 >gi|162533080|ref|NP_791083.3| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato str. DC3000] gi|32363284|sp|Q887N8|RHLB_PSESM RecName: Full=ATP-dependent RNA helicase rhlB gi|28851702|gb|AAO54778.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato str. DC3000] Length = 397 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 10 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 69 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 70 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 129 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 130 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 189 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 190 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 248 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 307 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 366 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 367 QLPAIEEKLGRKI 379 >gi|126344320|ref|XP_001381629.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Monodelphis domestica] Length = 818 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 391 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 450 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 451 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 510 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 511 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 570 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 571 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 630 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 631 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 685 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 686 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 745 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 746 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 799 Query: 389 QHN 391 QH Sbjct: 800 QHK 802 >gi|110834556|ref|YP_693415.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2] gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax borkumensis SK2] Length = 551 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 223/371 (60%), Gaps = 12/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++ A+ G+ +P+PIQ + IPL+L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FASLGLPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLAR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ +R P+ LIL PTRELA QVA E++ K+ L V + GG + Q K L Sbjct: 68 LDPS---LREPQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLKGLRG 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH +RG + +NN++ LV+DEAD ML MGFI ++ + P Q Sbjct: 125 GAQVIVGTPGRVMDHMDRGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 LFSATM ++KV++ L+ PK + + N ++T TI + VA + C +L+ Sbjct: 185 LFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEA- 243 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + D + ++F K+ + L L ++G A++G+I Q+ R K + K+ L Sbjct: 244 -EEHDAV---LVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDL 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+ ARGLD+P + HV N+D+P E Y+HRIGRTGRAGR G A VA+ + + Sbjct: 300 LIATDVVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLR 359 Query: 359 AIEKLIEKKVD 369 IE++ + ++ Sbjct: 360 QIERITRQSIE 370 >gi|88860699|ref|ZP_01135336.1| DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domain [Pseudoalteromonas tunicata D2] gi|88817294|gb|EAR27112.1| DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domain [Pseudoalteromonas tunicata D2] Length = 431 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 218/371 (58%), Gaps = 15/371 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGL P ++ + + Y +PTPIQ + IP VL D+ A TG+GKTA+F LPML Sbjct: 9 NFTELGLIPPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPMLQ 68 Query: 62 ILEK---GRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIP 111 L G+ V + L+L PTRELA QVA++ + Y ++N + + GG+ Sbjct: 69 QLYLQQQGKTSVATNKGNYVAGLVLVPTRELATQVANSIKSYAAHFNGAIKTVAVFGGVS 128 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 AQ + L G+D+++ TPGR+LD + + ++ + LV+DEADRML +GF + + Sbjct: 129 VNAQMQALRGGSDIVVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLGLGFTEELSQLL 188 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 +L+P +QTLLFSAT ++Q ++++ L NP I+V + S + ++ F K Sbjct: 189 ALMPAKKQTLLFSATFPLQVQSLTQSLLTNPVEIQVQS-SDASTVVQRVFTVNKG---AK 244 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L+ ++ + +IF N K + +L LEK+G S HG+ Q +R ++L F Sbjct: 245 TELLAHLI-TEHKWRQALIFVNAKNHCEHLAQKLEKRGISAKVFHGDKGQSARTRVLEEF 303 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K G I +++A+D+AARGLDI + V N+++P +Y+HRIGR+GRAG G A +L+ + Sbjct: 304 KAGEIDILIATDIAARGLDIEKLPVVINYNLPRSPADYMHRIGRSGRAGEVGLALSLIDQ 363 Query: 352 EDIKHIDAIEK 362 +D H IEK Sbjct: 364 DDYHHFSIIEK 374 >gi|261337192|ref|NP_001100263.2| probable ATP-dependent RNA helicase DDX23 [Rattus norvegicus] gi|149032134|gb|EDL87046.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (predicted), isoform CRA_b [Rattus norvegicus] Length = 819 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 392 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 451 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 452 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 511 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 512 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 571 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 572 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 631 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 632 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 686 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 687 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 746 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 747 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 800 Query: 389 QHN 391 QH Sbjct: 801 QHK 803 >gi|258622745|ref|ZP_05717763.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] gi|258584933|gb|EEW09664.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] Length = 460 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRIIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ +N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPASIEQIAQSVTRNAMMIKVAATHDTS-SIRQYFYKVDGSAARDEALEALLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDIAIE 367 >gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991] gi|158432206|gb|EDP10495.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991] Length = 572 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 138/351 (39%), Positives = 213/351 (60%), Gaps = 9/351 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L +S ++ AV + GY + T IQ K IP +++ DV G + TGTGKTA+F +P + + Sbjct: 4 FNELHISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPAIEM 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 ++ + + LI+ PTREL QVA K+ K + + + GG P E Q + L+R Sbjct: 64 VQ---PQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLKR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR--Q 179 G +++ TPGRI+DH R L +++I ++++DEAD ML+MGF I+ I SL+P R Q Sbjct: 121 GCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSYQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSAT E+ ++++ F +P +E+ + T +T+E + KK L+ LL Sbjct: 181 TILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEV--PRGKKANALRVLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + +IF N KK V L L K CA+HG++ Q R +++ F+ G++ ++ Sbjct: 239 NHYDP-ELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 +A+D+AARG+D+ DV V NFD+P E YIHRIGRTGRAG+ G A TL++ Sbjct: 298 IATDVAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLIS 348 >gi|37528482|ref|NP_931827.1| ATP-dependent RNA helicase RhlB [Photorhabdus luminescens subsp. laumondii TTO1] gi|39931722|sp|Q7MYL2|RHLB_PHOLL RecName: Full=ATP-dependent RNA helicase rhlB gi|36787920|emb|CAE17037.1| ATP-dependent RNA helicase RhlB [Photorhabdus luminescens subsp. laumondii TTO1] Length = 428 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 157/421 (37%), Positives = 236/421 (56%), Gaps = 15/421 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F+D L PKV+ A+ + G+ TPIQ T+P ++ DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFHY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLTHPAAEERQTNQPRALIMAPTRELAVQIYSDAEDLAQATGLKMGLAYGGDGYDKQLKI 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 LE G D+LI T GR++D+ +G + +N ++++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPPVN 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R LLFSAT++ +++++ + + + IEV T I E F Y +K LL Sbjct: 191 ERMNLLFSATLSYRVRELAFEQMNHAEYIEVEPLQKTGHRIREELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNGN 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 IDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 ++ AIE I+ V N L L P + NH R+NN + +T + RK+ Sbjct: 367 NLPAIEDYIQHSIPVSKYNSQALLKDLPAPKRRYRSRSGNHQRRNNLSHRNNTPRNNRKR 426 Query: 412 N 412 + Sbjct: 427 S 427 >gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14] gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192] gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1] gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016] gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14] gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192] gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016] Length = 458 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 226/392 (57%), Gaps = 13/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LS ++ + GY + TPIQ +++PL+LQ HD+ A+TG+GKTA+F L +L+ Sbjct: 6 FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + L+L PTRELA QVA + + N+ V L GG+P+ Q LE Sbjct: 66 LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI +H +G L+++ + LV+DEADRMLDMGF I I +P RQTL Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D ++K+++ F+++P++++V + + ++ + F Q L Q + Sbjct: 183 LFSATYPDGIEKLAKTFMRDPRQVKVESLHADSQIEQRFFEIDPKQRMDAVVRLLQHFRP 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + FC ++ L +L+ Q S A+HG+++QR R ++L+ F + ++VA Sbjct: 243 QSC----VAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N ++ E +IHRIGR+GRAG G A +LVA + AIE Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358 Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388 L ++ + W L L PP+ + IA Sbjct: 359 DLQKQPLAWYALGQLKASPEPLLPPMSTLCIA 390 >gi|66522071|ref|XP_624210.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Apis mellifera] Length = 772 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 141/356 (39%), Positives = 209/356 (58%), Gaps = 8/356 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G ++ A+ Y +PTPIQ + +P L D+ GIA+TG+GKTA+F+ PML Sbjct: 257 FGHFGFDDALIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVH 316 Query: 63 LEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R P LIL PTREL+ Q+ K+GK YN+ V GG Q+K LE Sbjct: 317 IMDQRELKEGDGPIGLILAPTRELSQQIYQEARKFGKVYNVQVCCCYGGGSKWEQSKALE 376 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA++++ TPGRI+D + + LV+DEADRM DMGF P +++I + V RQT Sbjct: 377 GGAEIVVATPGRIIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 436 Query: 181 LLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT ++K++ + L +P RI + + + A+ +H V K LLQ L+ Sbjct: 437 LLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVIVFNNNPTGKWTWLLQNLI 496 Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + S ++ +IF +K N L ++L+ + F V +HG++DQ R K+++ FK+ + Sbjct: 497 EFLSAGSL---LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKEVS 553 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TLV ++D Sbjct: 554 TLVATDVAARGLDIPHIRTVLNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKD 609 >gi|256419120|ref|YP_003119773.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] gi|256034028|gb|ACU57572.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] Length = 414 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 134/376 (35%), Positives = 230/376 (61%), Gaps = 5/376 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +S ++ ++ + G+ +PT IQ K IP +L+ DV IAQTGTGKTA+F +P+L Sbjct: 1 MKFEQYRISEEIKRSLEELGFKRPTDIQFKAIPSILKGDDVLAIAQTGTGKTAAFAIPVL 60 Query: 61 TILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L++ R R +++ PTRELA Q+++ FE+ K L + L GG+ Q KK Sbjct: 61 HKLQQYHPRKTKGEVRCVVMVPTRELAVQISEVFERLAKYTKLNILGLHGGVDQAPQLKK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +G DVLI TPGR+ D ++G + ++ IL++DEAD MLD+GFI I+++ +P Sbjct: 121 LAQGVDVLIATPGRMFDLISQGFIDLSQTGILILDEADHMLDLGFIRDIRDVLKHLPRRH 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL FSAT+ ++++ ++ + + NP RI+++ ++ ++H Y K L++L Sbjct: 181 QTLFFSATIDEDIKDLAYSVVNNPIRIQISPQDPVSKNVQHA--VAYVGMDDKRFFLERL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ K ++F K + ++E+ G +HG +Q +R++++ FK+G I+L Sbjct: 239 VKEFPENKI-LVFVRTKVRAERVAAAMERVGIKSLTMHGGKEQDNRLQVMDEFKKGDIKL 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++ +D+ ARG+DIPDV +V N+D+P+ ENY+HR+GRTGR + G+A + + E+ +D Sbjct: 298 LITTDVNARGIDIPDVEYVVNYDLPDVPENYVHRVGRTGRGVKKGQAVSFCSDEEKPVLD 357 Query: 359 AIEKLIEKKVDWLNGD 374 AI++ + K++ + D Sbjct: 358 AIQQYLGKEITVMKID 373 >gi|237799853|ref|ZP_04588314.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022708|gb|EGI02765.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 484 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 222/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 97 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 216 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + P +E+ + + ++ +E A + K LL Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTEPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 454 QLPAIEEKLGRKI 466 >gi|226506900|ref|NP_001142117.1| hypothetical protein LOC100274281 [Zea mays] gi|194704910|gb|ACF86539.1| unknown [Zea mays] gi|194707190|gb|ACF87679.1| unknown [Zea mays] Length = 494 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 143/426 (33%), Positives = 231/426 (54%), Gaps = 34/426 (7%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D+G V+ + AG+V+PTPIQ + P+ L+ D+ GIA+TG+GKT +++LP + Sbjct: 92 EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 151 Query: 62 ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 IL G P L+L PTRELA Q+ K+G + + + GG+P Q Sbjct: 152 HVNAQPILSPGDG----PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQ 207 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L++G +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 208 VRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR 267 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQ-YSKKC 232 RQTL +SAT E+++++ NFL +P ++ + + A ++H + + +Q Y+K Sbjct: 268 PDRQTLYWSATWPKEVEQLARNFLFDPYKVTIGSEDLKANHAIVQHVEILSESQKYNKLV 327 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL+ ++ + IF + KK L G+ +IHG+ Q R +LS FK Sbjct: 328 NLLEDIMDGSRIL----IFMDTKKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFK 383 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G +M A+D+AARGLD+ DV +V N+D P E+Y+HRIGRTGRAG G A+T Sbjct: 384 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 443 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 + + + ++E+ ++ +L+++ + P P S+G+ R + Sbjct: 444 NARFAKELINILEEAGQKVSSELAAMG---------------RGAPPP--SSGYRDRYRG 486 Query: 413 YSSQKS 418 Y +S Sbjct: 487 YGGGRS 492 >gi|91792106|ref|YP_561757.1| ATP-dependent RNA helicase SrmB [Shewanella denitrificans OS217] gi|91714108|gb|ABE54034.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 411 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 221/368 (60%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L ++ ++ G+ PT IQ +TIPL +++ D+ A TGTGKTASF+LP L Sbjct: 1 MLFEDFHLDHSLLDSLKAMGHNTPTTIQQQTIPLAMEQEDILAKAPTGTGKTASFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R L+L PTRELA+Q+ + L ++++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRFDGQARVLVLTPTRELASQIHRYACHLATDLGLDISIVTGGVPYGPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D++I TPGR++++ ++ K +EI+VIDEADRMLDMGF ++ I +Q Sbjct: 121 AGNVDIMIATPGRLMEYLDKNKFDATEVEIMVIDEADRMLDMGFSSVVKTIAIEAQGCKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ +Q+ + L +P ++V P S I H ++ + K ALL L Sbjct: 181 KMLFSATLEGGGVQRFARELLDDPVTVDVEAPRSEKAKI-HQWIHLADDQTHKFALLCNL 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q+++K I+F ++ V +L L K+G S + G+++Q+ R + L F +G + + Sbjct: 240 LR-QESVKRTIVFVKTREVVASLEGLLLKEGISCAFMRGDMEQKKRFQALGRFTKGEVDI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI D+ HV N+D+P A+ Y+HRIGRTGRAG G A +LV D++ + Sbjct: 299 LLATDVAARGIDIDDITHVINYDMPRSADAYVHRIGRTGRAGAKGTAISLVEAHDMRIVS 358 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 359 KIERYIEQ 366 >gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223] gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223] Length = 416 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADL L P ++ A+ + G+ +PT +Q + IP L DV A TGTGKTA+F +P L Sbjct: 5 FADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQY 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QVA+ + KN L + + GG+ ++ L Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++ + + L+NP I+ P + I + K LL+++L Sbjct: 185 LFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F ++ + +L LEK I G + Q R ++ F+EG++ +++ Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMQQDRRNNAITRFREGSVNILL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV D + + Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361 Query: 361 EKLIEKKV 368 E+ I+++V Sbjct: 362 ERYIKEEV 369 >gi|302690998|ref|XP_003035178.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8] gi|300108874|gb|EFJ00276.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8] Length = 449 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 152/416 (36%), Positives = 229/416 (55%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL ++ A+ + PT IQ + +P L+ D+ G+A TG+GKTA+F LP+L Sbjct: 16 FKSLGLIDPLLEALDKMSFKAPTEIQAQALPHALEGRDIIGVASTGSGKTAAFALPILQK 75 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L P+ L +L PTRELA Q++ FE G + A+++GG AQ L Sbjct: 76 LWDD------PKGLFACVLAPTRELAYQISQQFEALGSAMGVRCAVIVGGTDIMAQKVAL 129 Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+ DH + K + I+ LV+DEADR+LDM F P I I ++P R Sbjct: 130 AKRPHIVVATPGRLDDHLEKTKGFNLRGIKFLVLDEADRLLDMDFGPVIDKILKVIPKER 189 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATMT ++ K+ L NP R+EVNT T +++ ++ +K LL L Sbjct: 190 TTYLFSATMTTKVAKLQRASLSNPVRVEVNTKYQTVDSLLQYYL--LMPLKEKDTLLVYL 247 Query: 239 LQS--QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + Q+++ IIF + L L GF +HG + Q R+ LS FK G Sbjct: 248 ANTLAQNSI---IIFTRTVNDAARLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGGR 304 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GK+ T V + D++ Sbjct: 305 KVLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITFVTQYDVEF 364 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 I IEK+I KK++ D ++ E++ A A + + G +R++ Sbjct: 365 IMRIEKVIGKKMELWPTDEEEVSLLRERVGEAARVAAAEMRDQAKAGHGGKKRRRG 420 >gi|330969256|gb|EGH69322.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 483 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 222/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 96 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 155 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 156 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 215 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG + ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 216 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 275 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 276 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 333 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 334 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 392 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 393 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 452 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 453 QLPAIEEKLGRKI 465 >gi|157371914|ref|YP_001479903.1| ATP-dependent RNA helicase SrmB [Serratia proteamaculans 568] gi|157323678|gb|ABV42775.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568] Length = 441 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 156/437 (35%), Positives = 243/437 (55%), Gaps = 16/437 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L +++ A+ D GY +PT IQ + IP + DV G A TGTGKTA+F+LP+L Sbjct: 5 NFSELELDERLINALRDKGYERPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + PR LIL PTRELA QVAD + + +L +A + GG+ + + Sbjct: 65 HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 DV++ T GR+L + +E L++DEADRMLDMGF I+ I++ + QT Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQT 184 Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ D +++ +E L+ P +E + + I + K ALL LL Sbjct: 185 LLFSATLEGDAIREFAERILKEPVEVEADPSRRERKKILQWYYRA-DDVVHKTALLVHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K+ +IF +++ V L L + G + C + G + Q R + + +G + ++ Sbjct: 244 KQPDVQKS-VIFVRKRERVHELAAWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI D+ HVFNFD+P A+ Y+HRIGRTGRAGR G A +LV D H+ Sbjct: 303 VATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHD--HL-- 358 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---RKKNYSSQ 416 L+ K +LN L + +E++ + + K+N P K R ++KN Sbjct: 359 ---LLGKVGRYLNEPLKAR--VIEELRPSTKVPSEKSNGKPSKKVIAKRAADKEKNKEKA 413 Query: 417 KSHIPLKESEKISKLQQ 433 K + ++++ + K +Q Sbjct: 414 KVKVRHRDAKNVGKRRQ 430 >gi|114644988|ref|XP_509035.2| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 2 [Pan troglodytes] Length = 820 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|2655202|gb|AAB87902.1| U5 snRNP 100 kD protein [Homo sapiens] Length = 820 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|291389065|ref|XP_002711079.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Oryctolagus cuniculus] Length = 820 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|304411815|ref|ZP_07393426.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307303417|ref|ZP_07583172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304349675|gb|EFM14082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306913777|gb|EFN44199.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 427 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 205/362 (56%), Gaps = 10/362 (2%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LG+ ++ + + YV PTP+Q TIP VL DV A TG+GKTA+F +P+L L + Sbjct: 14 LGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVE 73 Query: 66 GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120 + + R L+L PTRELA QVAD+F Y + N L + GG+ AQ + L Sbjct: 74 AKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GADVL+ TPGR+LD + + +N + LV+DEADRML +GF + + +P +QT Sbjct: 134 AGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQT 193 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +E+++++ L P +E S TI + K ALL L++ Sbjct: 194 LLFSATFPEEVRELTAKLLNAP--LEYQLQSEQESTIHQRVITV--NRPMKTALLAHLIK 249 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF + K +L L K+G S HG+ Q +R ++L FK G I +++ Sbjct: 250 -EHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ ED H I Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368 Query: 361 EK 362 EK Sbjct: 369 EK 370 >gi|253582317|ref|ZP_04859540.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725] gi|251835856|gb|EES64394.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725] Length = 527 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 221/368 (60%), Gaps = 8/368 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60 +F LGL K + A+ GY KPTPIQ TIP +L D+ G AQTGTGKTA+F LP+L Sbjct: 6 EFKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPIL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E G+ + + ++L PTRELA QVA+ + + + GG E Q ++L+ Sbjct: 66 ERFEPGK----VVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLK 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ TPGR++D +R + ++N++ ++DEAD ML+MGF+ ++ I ++ Sbjct: 122 KGTDIIVGTPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDDKRM 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM +E+ KV++ +++ + + V T T + + + + + K AL + + Sbjct: 182 LFFSATMPNEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVHER-DKFEALCRIIDL 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D GI+FC K +V ++ L +G+ +HG+I Q R L FK I ++V Sbjct: 241 TKDFY--GIVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P AE+Y+HRIGRTGRAG+ G A T + ++ + + I Sbjct: 299 ATDVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 358 Query: 361 EKLIEKKV 368 +K+++ ++ Sbjct: 359 QKIVKTEI 366 >gi|296211536|ref|XP_002752462.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Callithrix jacchus] Length = 820 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|88797378|ref|ZP_01112968.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297] gi|88780247|gb|EAR11432.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297] Length = 462 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 144/352 (40%), Positives = 211/352 (59%), Gaps = 7/352 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L P ++ + Y T IQ KT+PLVL DV A+TG+GKTA+F L +L Sbjct: 5 FSDLPLKPALLTNLNTLNYTAMTEIQQKTLPLVLDGQDVIAQAKTGSGKTAAFGLGVLQA 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ R R++ +LIL PTRELA QVA K + +N+ + L GG+PF Q L Sbjct: 65 LQVERFRIQ---SLILCPTRELADQVAQELRKLARAIHNIKILTLCGGMPFGPQIGSLAH 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI +H +G L +++++ LV DEADRMLDMGF I I VP RQTL Sbjct: 122 GAHIIVGTPGRIEEHLRKGTLKLDDVQTLVFDEADRMLDMGFQEVIDTIVDQVPAQRQTL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT DE+ + + ++V + + A+ IE F T + + + + Q+LL + Sbjct: 182 LFSATYPDEIDSLCARVTRKATLVQVES-AHQADVIEQRFYRTES-FDDRLQMSQRLLLN 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 M N +IFCN K+ + L++ GF A+HG+++QR R + L F G++ ++VA Sbjct: 240 DKPM-NTLIFCNTKRETDEVADFLKQAGFDALALHGDMEQRQRNETLIRFANGSVSVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +D+AARGLDI + V NF + E + HRIGRTGRAG G+A++ A+++ Sbjct: 299 TDVAARGLDIDKLDAVINFHIAKDPEVHTHRIGRTGRAGERGRAYSFFAEKE 350 >gi|257470192|ref|ZP_05634283.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185] gi|317064408|ref|ZP_07928893.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185] gi|313690084|gb|EFS26919.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185] Length = 527 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 221/368 (60%), Gaps = 8/368 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60 +F LGL K + A+ GY KPTPIQ TIP +L D+ G AQTGTGKTA+F LP+L Sbjct: 6 EFKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPIL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E G+ + + ++L PTRELA QVA+ + + + GG E Q ++L+ Sbjct: 66 ERFEPGK----VVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLK 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ TPGR++D +R + ++N++ ++DEAD ML+MGF+ ++ I ++ Sbjct: 122 KGTDIIVGTPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDEKRM 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM +E+ KV++ +++ + + V T T + + + + + K AL + + Sbjct: 182 LFFSATMPNEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVH-ERDKFEALCRIIDL 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D GI+FC K +V ++ L +G+ +HG+I Q R L FK I ++V Sbjct: 241 TKDFY--GIVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P AE+Y+HRIGRTGRAG+ G A T + ++ + + I Sbjct: 299 ATDVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 358 Query: 361 EKLIEKKV 368 +K+++ ++ Sbjct: 359 QKIVKTEI 366 >gi|193785886|dbj|BAG54673.1| unnamed protein product [Homo sapiens] Length = 800 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 373 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 432 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 433 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 492 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 493 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 552 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 553 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 612 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 613 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 667 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 668 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 727 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 728 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 781 Query: 389 QHN 391 QH Sbjct: 782 QHK 784 >gi|87118170|ref|ZP_01074069.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas sp. MED121] gi|86165804|gb|EAQ67070.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas sp. MED121] Length = 459 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 219/373 (58%), Gaps = 5/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+D G +++ ++ G+ T IQ + IP + D+ ++TG+GKT ++++P L Sbjct: 15 LQFSDFGFDARILQSLRHWGFDSATQIQAQAIPEAMAGRDLLASSKTGSGKTLAYLIPAL 74 Query: 61 TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + +A + R LIL PTRELA QV + L AL++GG F Q K L Sbjct: 75 HRVYRVKALSNKDARVLILVPTRELAKQVYSQLRLLVASSKLKTALILGGENFNDQIKDL 134 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178 ++ ++ TPGR++DH N+ + ++ +E+L++DEADRMLD+GF ++ I R Sbjct: 135 QKDPQFIVATPGRLVDHLNQRNMFLDGLELLILDEADRMLDLGFADQLKQIDDAASHRLR 194 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTL FSAT+ + E+ +++ L P R+ + + I+ F K A+L Sbjct: 195 QTLFFSATLDNAEVNDIAQRLLNEPSRVAIGAGTDVHSDIKQKFYLC-DHLDHKEAILTH 253 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ Q+T+K GIIF K + V L LE++GF+ A++G++ Q +R K++ +F G Q Sbjct: 254 VLE-QETIKQGIIFTATKLDTVRLASLLEEKGFTTQALNGDLTQSARNKVMDSFARGHFQ 312 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++V++DLA+RGLDI +V HV NFD+P +E Y+HR GRTGRAG G AF+LV +D + Sbjct: 313 ILVSTDLASRGLDIANVTHVINFDIPKHSEEYVHRTGRTGRAGFQGDAFSLVGPKDWHNF 372 Query: 358 DAIEKLIEKKVDW 370 A+E + + + Sbjct: 373 KALETFLSRSFSF 385 >gi|73996608|ref|XP_851051.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 2 [Canis familiaris] Length = 820 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99] gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99] Length = 491 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 216/369 (58%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL V+ +V +AG+ P+PIQ K IP VLQ DV AQTGTGKTA+F LP++ Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ + L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 82 LKNNHTI----KALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 138 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 198 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERAEAIMRLLDTQ 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K+ I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 256 APEKS-IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVF++ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 315 DVASRGLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 375 EIDSEIELF 383 >gi|262373548|ref|ZP_06066826.1| DEAD/DEAH box helicase [Acinetobacter junii SH205] gi|262311301|gb|EEY92387.1| DEAD/DEAH box helicase [Acinetobacter junii SH205] Length = 642 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 141/378 (37%), Positives = 227/378 (60%), Gaps = 15/378 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q + IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIP 111 L E+ +A + P L+L PTRELA QV+ + + ++ + +A ++GG+P Sbjct: 65 LTGQETFVPFKERMKA-ITQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 F Q ++L +GA V++ TPGR+LD NR +L ++ +E L++DEADRMLD+GF ++ I Sbjct: 124 FGKQIQQL-KGAQVIVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFSEDLEAIG 182 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 L QTL+FSAT D + +++E + +P+RI + T ST + T + K Sbjct: 183 ELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDG-FEHK 241 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L S +++ ++F + +++ L L + G SV A+HG + Q R + L + Sbjct: 242 KKLLTHWL-SDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 301 REGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAITLATY 360 Query: 352 EDIKHIDAIEKLIEKKVD 369 + I A+E ++ +++ Sbjct: 361 RERGKIRALEDYLDARLN 378 >gi|41327771|ref|NP_004809.2| probable ATP-dependent RNA helicase DDX23 [Homo sapiens] gi|160385708|sp|Q9BUQ8|DDX23_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName: Full=100 kDa U5 snRNP-specific protein; AltName: Full=DEAD box protein 23; AltName: Full=PRP28 homolog; AltName: Full=U5-100kD gi|12803125|gb|AAH02366.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapiens] gi|119578415|gb|EAW58011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo sapiens] gi|119578419|gb|EAW58015.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo sapiens] gi|123981044|gb|ABM82351.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct] gi|123995847|gb|ABM85525.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct] gi|189065458|dbj|BAG35297.1| unnamed protein product [Homo sapiens] Length = 820 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 455 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 212/357 (59%), Gaps = 8/357 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LG++ ++ A+ V IQ T+P+ L+ D+ G A+TG GKT F +P+L Sbjct: 10 FTELGVAQEITDALATQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDR 69 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I + PR LI+ PTREL QV ++ + N + V + GG P+E Q K L Sbjct: 70 IFDDADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKAL 129 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D+++ TPGR++D +NRG+L ++ + ILV+DEAD MLD+GF+P I+ I + + Q Sbjct: 130 KDGTDLVVGTPGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIEKIIAGITAEHQ 189 Query: 180 TLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 T+LFSATM D + ++ F+ P R E++ + T T + ++ K A++ + Sbjct: 190 TMLFSATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRM--DKVAVISR 247 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +LQ++ + IIF K++ + L GF V ++HG++ Q +R + L F++G + Sbjct: 248 VLQARGRGRT-IIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVD 306 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++VA+D+AARG+DI DV HV N+ P+ Y+HRIGRTGRAG G A TLV +++ Sbjct: 307 ILVATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDEL 363 >gi|73539745|ref|YP_294265.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha JMP134] gi|72117158|gb|AAZ59421.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] Length = 474 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 211/370 (57%), Gaps = 8/370 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ L L+P + + GY + TPIQ ++PL L HD+ A+TG+GKTA+F L +L Sbjct: 18 DFSTLPLAPATLATLAQLGYDEMTPIQAASLPLTLAGHDLIAQAKTGSGKTAAFALALLH 77 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 L+ R V+ ++L PTRELA QV + + N+ V L GG P Q L Sbjct: 78 RLDARRFDVQ---AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDSLV 134 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGRILDH +RG L ++ I LV+DEADRMLDMGF I + S P RQT Sbjct: 135 HGAHVVVGTPGRILDHIDRGSLELSAINTLVLDEADRMLDMGFFDDISYVASRCPRERQT 194 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT + K+S+ FL+ P+ +++ ++ ++ + ++ L + Sbjct: 195 MLFSATYPAGIDKLSQKFLRKPQEVKLAEKHDSSSIRQYFYEVDESERLSAVGRLLDHFR 254 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 T+ FCN K +L L QGF A+HG+++QR R ++L F G+ ++V Sbjct: 255 PASTLA----FCNTKARCRDLVDLLRGQGFQALALHGDLEQRDRDQVLVQFANGSCSVLV 310 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N ++ E +IHRIGRTGRAG G AF+LV+ +++ + + Sbjct: 311 ATDVAARGLDIAQLEAVINVEITPDPEVHIHRIGRTGRAGEEGHAFSLVSMDEMGRVGNL 370 Query: 361 EKLIEKKVDW 370 E+ + +W Sbjct: 371 EQHHGGEFEW 380 >gi|168185001|ref|ZP_02619665.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Bf] gi|237795441|ref|YP_002862993.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium botulinum Ba4 str. 657] gi|182671947|gb|EDT83908.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Bf] gi|229262402|gb|ACQ53435.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Ba4 str. 657] Length = 376 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 147/366 (40%), Positives = 219/366 (59%), Gaps = 6/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS ++ + ++PTPIQ ++I L+ +DV AQTGTGKT +F+LPM Sbjct: 4 FEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMF-- 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E + + LI+ PTRELA Q+ + K + +L + GG +Q KKL+ Sbjct: 62 -ENISPDIDAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNN 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+LDH NR L +++ LV+DEAD ML MGF +++I P RQTL Sbjct: 121 IHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLC 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++K++ +++PK I + T + I+ + T + +K L ++L + Sbjct: 181 FSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDR--RKQEDLCKILDEE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIFC K+ V L +L K+G++ +HG+I Q R +I+ +FK IQ ++A+ Sbjct: 239 NPFM-AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDI V HVFN+D+P AE+YIHRIGRTGRAG G F VA +D + + IE+ Sbjct: 298 DVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMIER 357 Query: 363 LIEKKV 368 I+ K+ Sbjct: 358 EIKFKI 363 >gi|38233323|ref|NP_939090.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199582|emb|CAE49235.1| Putative ATP-dependent RNA helicase [Corynebacterium diphtheriae] Length = 436 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 204/355 (57%), Gaps = 4/355 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG++ ++ A+ G + IQ T+P+ L D+ G A+TG GKT F +P++ Sbjct: 10 FVELGVAREITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDR 69 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + PR L++ PTRELA QV D+ + +N +TVA + GG P+E Q +L Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQL 129 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E G DV++ TPGR++D + RG L ++++ +LV+DEAD MLD+GF P I+ + + + Q Sbjct: 130 ESGVDVVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPHQ 189 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++ F+ +P I + V A K A+ ++L Sbjct: 190 TMLFSATMPGAVVTLARTFMHHPVHIRAEDTGAAQTHASTTQVIFQAHRMDKSAVTARIL 249 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q++ K IIF K+ L L ++GF V +HG++ Q +R L F+ G ++ Sbjct: 250 QAEGRGKT-IIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHIL 308 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 VA+D+AARGLDI DV HV N+ P+ Y+HRIGRTGRAG G A TLV +++ Sbjct: 309 VATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYDEL 363 >gi|260770664|ref|ZP_05879595.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972] gi|260614390|gb|EEX39578.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972] gi|315178384|gb|ADT85298.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii NCTC 11218] Length = 435 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 153/410 (37%), Positives = 230/410 (56%), Gaps = 11/410 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD GL P+VV + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADFGLHPQVVEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFHH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E + + AL GG ++ Q K Sbjct: 71 LLTTPEIEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176 L+ G DVLI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P Sbjct: 131 LQDGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + NP+ + V T I E F Y K ALL Sbjct: 191 DRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPTQKTGHRIKEELF---YPSNEHKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ I+F N K + L G V ++G++ Q+ R +IL F +G Sbjct: 248 QTLLE-EEWPDRAIVFANTKHRCEQIWGHLAADGHRVGLLNGDVPQKKRERILEQFTKGE 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 307 LDVLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 ++ IE+ IE + D S+L L K + + R+ N Q++ G Sbjct: 367 NLPGIEEYIEHAIPTSEYDPSALLTDLPKALTMRSSQQRRTNTGGQRNNG 416 >gi|114644990|ref|XP_001159984.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 1 [Pan troglodytes] Length = 800 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 373 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 432 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 433 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 492 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 493 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 552 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 553 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 612 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 613 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 667 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 668 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 727 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 728 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 781 Query: 389 QHN 391 QH Sbjct: 782 QHK 784 >gi|109096393|ref|XP_001104339.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 5 [Macaca mulatta] Length = 820 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|127511701|ref|YP_001092898.1| ATP-dependent RNA helicase SrmB [Shewanella loihica PV-4] gi|126636996|gb|ABO22639.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 419 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 216/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L ++ ++ G++ PT IQ +TIPL L+ D+ A TGTGKTASF+LP L Sbjct: 14 MQFEDFHLDDTLLESLKAMGHLAPTTIQQQTIPLALEHKDILARAPTGTGKTASFLLPAL 73 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R R LIL PTRELA+QV L +A++ GG+P+ Q + L Sbjct: 74 QHLLDFPRRYSGQARVLILAPTRELASQVHRYASHLATGLGLDIAIITGGVPYAPQEQAL 133 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR++++ ++ ++EILV+DEADRMLDMGF +Q+I + Sbjct: 134 KENIDILVATPGRLMEYLDKELFDAQSVEILVLDEADRMLDMGFSSAVQSIAIEAQQRKH 193 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ + + +E L NP IE P S I H ++ K ALL + Sbjct: 194 NMLFSATLEGGGVSRFAEMLLTNPVTIETKPPRSEKAKI-HQWMHLADDKEHKFALLCDI 252 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ ++ + I+F ++ V +L L++ G + G+++Q++R + L F +G + + Sbjct: 253 LKREE-VSRAIVFVKTREVVASLEGQLQQAGIHCAFMRGDMEQKARFQALGRFTKGEVNV 311 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI + HV NFD+P A+ Y+HRIGRTGRAG G A +LV D++ + Sbjct: 312 LLATDVAARGIDIDGITHVINFDMPRSADTYVHRIGRTGRAGNKGTAISLVEAHDMRVVA 371 Query: 359 AIEKLIEK 366 IE+ IE+ Sbjct: 372 KIERYIEQ 379 >gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense] gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense] Length = 564 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 226/370 (61%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L + + A+ + +++ TPIQ IP ++Q HDV G AQTGTGKT +F +P I Sbjct: 5 FEQLPILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIP---I 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 +EK ++ ++LIL PTREL QV + +K + Y + +A++ GG + Q + LE Sbjct: 62 IEKIDYKLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFRALES 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR++DH RGK+ ++ ++IL +DEAD ML MGF ++ I +P RQT+ Sbjct: 122 KPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQTV 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ +++++ + +N K ++V IE + ++ K L++ L Sbjct: 182 LFSATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLV-KEFDKNKLLVRLLDLK 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D + I+F N KK+V + L+ +GF A+HG++ Q R +++NF++G I++++A Sbjct: 241 RDY--STILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI D+ V N+D+P+ E Y+HRIGRTGRAG+ G A++ ++ + +E Sbjct: 299 TDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKLE 358 Query: 362 KLIEKKVDWL 371 +++KV +L Sbjct: 359 YYLKEKVKFL 368 >gi|91228021|ref|ZP_01262106.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] gi|269964531|ref|ZP_06178770.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|91188250|gb|EAS74549.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] gi|269830658|gb|EEZ84878.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 439 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 221/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P+V+ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLKPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E ++ L AL GG ++ Q K Sbjct: 71 LLTTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAESLTESTGLKTALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+LI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + P+ + V T I+ Y K ALLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMNTPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ IIF N K ++ L G V + G++ Q+ R KIL F +G + Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E + Sbjct: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAVN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + AIE+ IE + D S+L Sbjct: 368 LPAIEEYIEHTIPVSEYDSSAL 389 >gi|90417199|ref|ZP_01225126.1| putative ATP-dependent RNA helicase DbpA [marine gamma proteobacterium HTCC2207] gi|90330975|gb|EAS46236.1| putative ATP-dependent RNA helicase DbpA [marine gamma proteobacterium HTCC2207] Length = 466 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 149/397 (37%), Positives = 227/397 (57%), Gaps = 19/397 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ L L+P +V + GY + TPIQ + +P +L DV A+TG+GKTA+F L +L Sbjct: 9 DFSSLDLNPALVDNLASLGYSEMTPIQAQALPSILASKDVIAKAKTGSGKTATFSLGLLN 68 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120 L+ R RV+ TL+L PTRELA QVA K + +N+ V L GG+ F Q LE Sbjct: 69 KLDVKRFRVQ---TLVLCPTRELADQVAAEIRKLARGIHNIKVLTLCGGVAFGPQVGSLE 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+ DH + L ++N+ L++DEADRMLDMGF + +I +P RQT Sbjct: 126 HGAHIIVGTPGRVEDHLRKANLNLDNLTTLILDEADRMLDMGFQQALDDIVGYMPRQRQT 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLL 239 +LFSAT +++ K+++ +++P +EV S+ +E + Q + LL Q Sbjct: 186 MLFSATYPEKIDKIAQRIMRSPVTVEVQDSHSSQSIVETLYQIDNDQSRIEAVRLLLQAH 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + T+ IFCN K + + L G+ A+HG+++Q+ R + L+ F ++ ++ Sbjct: 246 QPETTL----IFCNTKIETDRVANELRAVGYEASALHGDLEQKDRDQTLACFANRSVSVL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N+ + E + HRIGRTGRAG G A +L +++ ID Sbjct: 302 VATDVAARGLDIDALDMVINYQMAQELEVHTHRIGRTGRAGAQGIACSLYTQKETYKIDL 361 Query: 360 IEKLIEKKVDWLNGDLSSLN--------PPLEKIDIA 388 +E +E+K + GDL L PP+ I I Sbjct: 362 LEDYLEQKFN--RGDLPHLELLREPVFYPPMVTIHIG 396 >gi|312959108|ref|ZP_07773627.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6] gi|311286878|gb|EFQ65440.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6] Length = 486 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 222/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ D G+ TPIQ + + L D G AQTGTGKTA+F++ ++T Sbjct: 99 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 158 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 159 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 218 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG + ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 219 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 278 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + +E +E A + K LL Sbjct: 279 AERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAG--ADKYKLL 336 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 337 YNLI-NDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 395 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 396 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 455 Query: 356 HIDAIEKLIEKKV 368 + +IE L+ +K+ Sbjct: 456 QLPSIETLLGRKI 468 >gi|197246501|gb|AAI69082.1| Ddx23 protein [Rattus norvegicus] Length = 798 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 371 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 430 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 431 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 490 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 491 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 550 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 551 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 610 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 611 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 665 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 666 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 725 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 726 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 779 Query: 389 QHN 391 QH Sbjct: 780 QHK 782 >gi|157804046|ref|YP_001492595.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel] gi|157785309|gb|ABV73810.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel] Length = 410 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 216/364 (59%), Gaps = 13/364 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 3 NFNLSEELIIALETMNITEPTEIQKQSIPIAMIGSDILASSQTGSGKTLAYLLPVIDSFI 62 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K + Y + A+LIGG P Q +L++ Sbjct: 63 KNKTTA-----LILVPTRELATQIYSTLNKVTRYYKINSAVLIGGEPMPKQFMQLKKNPK 117 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P RQ L+FS Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQFLMFS 177 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + +S+ +L NP RI V + A I E +A ++S+ L +QL + Sbjct: 178 ATMPKHIITLSQKYLNNPVRITVGANNKAAAEIKQESIHIADKEKFSE---LTKQLDNRE 234 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ IIF +++ L + L+ + AIHG++ QR R +++ +F++ ++MVA+ Sbjct: 235 GSV---IIFVKTRRSADQLANMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVAT 291 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ ED+ AI++ Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPEDVIRWRAIDR 351 Query: 363 LIEK 366 L+ K Sbjct: 352 LVNK 355 >gi|324505355|gb|ADY42303.1| ATP-dependent RNA helicase DDX23 [Ascaris suum] Length = 515 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 138/383 (36%), Positives = 213/383 (55%), Gaps = 33/383 (8%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++A+ GL +V+ ++ GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 86 NWAEAGLPSEVLDVIIKIGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 145 Query: 62 IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + + P +I+ PTRELA Q+ + K+G+ + +IGG E Q Sbjct: 146 WITSLPKIQSNEDQDSGPYAIIMAPTRELAQQIEEETVKFGQLLGIRTVSVIGGASREEQ 205 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL G +V+I TPGR+LD L ++ +++DEADRMLDMGF P +Q + +P Sbjct: 206 GLKLRLGVEVVIATPGRLLDVLENRYLSLDQCTYVILDEADRMLDMGFEPEVQKVLEYIP 265 Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 T RQT++F+ATM+ +++++ +L+ P + + + Sbjct: 266 VTNLKPDTEEAEKEESIMENFYSKKKYRQTVMFTATMSPAIERLARAYLRRPAVVYIGSV 325 Query: 211 SSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270 E +E + +K L +LL S+ IIF NQKK L L K GF Sbjct: 326 GRPTERVEQIVYMIGEERKRKK--LVELLSSEAFEPPIIIFVNQKKGADMLAKGLTKLGF 383 Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330 + C +HG Q +R L+ K+G+ ++VA+D+A RG+DI DV V N+D+ E+Y Sbjct: 384 APCVLHGGKGQDAREYSLAALKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYT 443 Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353 HRIGRTGRAG+HGKA T + ED Sbjct: 444 HRIGRTGRAGKHGKAITFLTPED 466 >gi|115486155|ref|NP_001068221.1| Os11g0599500 [Oryza sativa Japonica Group] gi|122206897|sp|Q2R1M8|RH52C_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52C gi|77551918|gb|ABA94715.1| DEAD-box protein 3, X-chromosomal, putative, expressed [Oryza sativa Japonica Group] gi|113645443|dbj|BAF28584.1| Os11g0599500 [Oryza sativa Japonica Group] Length = 623 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 218/384 (56%), Gaps = 21/384 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YV+PTP+Q IP+ L D+ AQTG+GKTA+F P+++ Sbjct: 157 FAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISG 216 Query: 63 L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 + ++G R P LIL PTREL+ Q+ + K+ + V + GG P Sbjct: 217 IMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPIN 276 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + LERG D+L+ TPGR++D R ++ + +I L +DEADRMLDMGF P ++ I Sbjct: 277 QQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQ 336 Query: 174 V----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229 + P RQT+LFSAT E+Q+++ +FL+N + V S+ + I + Q + Sbjct: 337 MDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQ--RVEFVQEA 394 Query: 230 KKCALLQQLLQSQ-DTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 K + L LL +Q D+ G ++F K+ +L H L GF +IHG+ +Q+ Sbjct: 395 DKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQE 454 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G Sbjct: 455 REYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 514 Query: 344 KAFTLVAKEDIKHIDAIEKLIEKK 367 A + + ++ +L+++ Sbjct: 515 LATAFFNENNSSMARSLAELMQES 538 >gi|163750898|ref|ZP_02158131.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99] gi|161329322|gb|EDQ00319.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99] Length = 458 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L P+++ + GY T IQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 1 MSFSTLTLKPELIDNLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119 L+ R ++ +L+L PTRELA QVA + +N+ V L GG+P Q L Sbjct: 61 NKLDVKRFCIQ---SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GA +++ TPGRI+DH +R L + N+ LV+DEADRML+MGF+P + I + +P RQ Sbjct: 118 EHGAHIIVGTPGRIIDHLSRELLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT ++QKV+E + P ++V + ++ +IE F + + AL LL Sbjct: 178 TLLFSATFPKQIQKVAEQIMFEPVMVKVASTHDSS-SIEQHFYQIDSNKDRPKALRLLLL 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + + ++FCN K+ + +L GFSV A+HG+++QR R L F + +M Sbjct: 237 QHRP--DSAVVFCNTKRETKEVAATLASDGFSVVALHGDLEQRDRDITLMQFANKSASIM 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N+++ E +IHRIGRTGRAG G A T +D I Sbjct: 295 VATDVAARGLDIEALDMVINYELAFDTEVHIHRIGRTGRAGSKGMALTFYTYDDDYKIKL 354 Query: 360 IEKLIEKKV 368 +E+ +E+ + Sbjct: 355 LEEYLERDI 363 >gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1] gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2] gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719] gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1] gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719] Length = 458 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 225/392 (57%), Gaps = 13/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LS ++ + GY + TPIQ +++PL+LQ HD+ A+TG+GKTA+F L +L+ Sbjct: 6 FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + L+L PTRELA QVA + + N+ V L GG+P+ Q LE Sbjct: 66 LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI +H +G L+++ + LV+DEADRMLDMGF I I +P RQTL Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D ++K+++ F+++P+++ V + + ++ + F Q L Q + Sbjct: 183 LFSATYPDGIEKLAKTFMRDPRQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQHFRP 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + FC ++ L +L+ Q S A+HG+++QR R ++L+ F + ++VA Sbjct: 243 QSC----VAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N ++ E +IHRIGR+GRAG G A +LVA + AIE Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358 Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388 L ++ + W L L PP+ + IA Sbjct: 359 DLQKQPLAWYALGQLKASPEPLLPPMSTLCIA 390 >gi|158259303|dbj|BAF85610.1| unnamed protein product [Homo sapiens] Length = 820 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GRPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|109096395|ref|XP_001104093.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 2 [Macaca mulatta] Length = 800 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 373 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 432 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 433 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 492 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 493 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 552 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 553 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 612 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 613 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 667 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 668 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 727 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 728 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 781 Query: 389 QHN 391 QH Sbjct: 782 QHK 784 >gi|326796081|ref|YP_004313901.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1] gi|326546845|gb|ADZ92065.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea MMB-1] Length = 446 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 225/389 (57%), Gaps = 9/389 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D GL +++ ++ GY PT IQ IP + D+ ++TG+GKT +++LP + Sbjct: 1 MLFKDFGLDTRLMRSLEHFGYDTPTQIQECAIPEAIAGRDLLASSKTGSGKTFAYLLPAI 60 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + +A R PR ++L PTRELA QV LT AL++GG F Q+K L Sbjct: 61 NRVYQRKALSRRDPRVVVLVPTRELAKQVYGQLRTLLAGSRLTSALILGGENFNDQHKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178 ++ ++ TPGR+ DH + L + E+L++DEADRMLD+GF ++ I + R Sbjct: 121 QKDPHFVVGTPGRLTDHLEKRHLYLEGTELLILDEADRMLDLGFADSMRAINNAASHRQR 180 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QTL FSAT+ + ++ ++E L+ P R+ V + + I +H F+ + + K ALL+ Sbjct: 181 QTLFFSATLDNTDVSVIAEELLREPSRVAVGHGTDQHQDISQHVFLCDHLDH--KEALLK 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ S +K GI+F K++ V L + G++ A+ G++ Q +R ++ NF G Sbjct: 239 HLV-SNAELKQGIVFTATKQDTVRLSELVTSWGYTSEALSGDLSQSARNSVMENFSRGKF 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++V++D+A+RGLDI V HVFNFDVPN AE ++HR GRTGRAG G A+T V +D + Sbjct: 298 QILVSTDIASRGLDIAAVSHVFNFDVPNPAEEFVHRTGRTGRAGFKGDAYTFVGPKDWYN 357 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385 A+E+ + K+ + + L P + + Sbjct: 358 FKAVEEFL--KIQFTTEQVEGLEPSFKGL 384 >gi|59712046|ref|YP_204822.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri ES114] gi|59480147|gb|AAW85934.1| ATP-dependent RNA helicase, DEAD box family [Vibrio fischeri ES114] Length = 421 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 217/370 (58%), Gaps = 15/370 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F +LGL ++ + + Y +PTPIQ + IP VL D+ A TG+GKTA+F LP+L Sbjct: 9 NFTELGLISPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPLLQ 68 Query: 61 --TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 L+ G+A+ L+L PTRELA QVAD+ + Y ++N + + GG+ Sbjct: 69 QIAELQSGKAQASKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVN 128 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L GAD+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + + +L Sbjct: 129 TQMLALRGGADILVATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLAL 188 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKC 232 P +QTLLFSAT +E+Q +++ L NP +E+ S+ A T+ + F + K Sbjct: 189 APKQKQTLLFSATFPEEVQTLTQALLNNP--VEIQLQSADASTVVQRVFTVNKGE---KT 243 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++L L+Q ++ + +IF N K +L L K+G + HG+ Q +R ++L FK Sbjct: 244 SVLAHLIQ-KNQWRQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFK 302 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I +++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A +L+ E Sbjct: 303 AGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYE 362 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 363 DYHHFKIIEK 372 >gi|125577677|gb|EAZ18899.1| hypothetical protein OsJ_34439 [Oryza sativa Japonica Group] Length = 541 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 218/384 (56%), Gaps = 21/384 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YV+PTP+Q IP+ L D+ AQTG+GKTA+F P+++ Sbjct: 75 FAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISG 134 Query: 63 L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 + ++G R P LIL PTREL+ Q+ + K+ + V + GG P Sbjct: 135 IMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPIN 194 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + LERG D+L+ TPGR++D R ++ + +I L +DEADRMLDMGF P ++ I Sbjct: 195 QQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQ 254 Query: 174 V----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229 + P RQT+LFSAT E+Q+++ +FL+N + V S+ + I + Q + Sbjct: 255 MDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQ--RVEFVQEA 312 Query: 230 KKCALLQQLLQSQ-DTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 K + L LL +Q D+ G ++F K+ +L H L GF +IHG+ +Q+ Sbjct: 313 DKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQE 372 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G Sbjct: 373 REYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 432 Query: 344 KAFTLVAKEDIKHIDAIEKLIEKK 367 A + + ++ +L+++ Sbjct: 433 LATAFFNENNSSMARSLAELMQES 456 >gi|156121051|ref|NP_001095672.1| probable ATP-dependent RNA helicase DDX23 [Bos taurus] gi|151554096|gb|AAI47903.1| DDX23 protein [Bos taurus] gi|296487810|gb|DAA29923.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Bos taurus] Length = 820 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|323495931|ref|ZP_08100998.1| ATP-dependent RNA helicase RhlB [Vibrio sinaloensis DSM 21326] gi|323319014|gb|EGA71958.1| ATP-dependent RNA helicase RhlB [Vibrio sinaloensis DSM 21326] Length = 433 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 147/382 (38%), Positives = 221/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P+V+ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLHPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L E + PR +I+ PTRELA Q+ ++ E + + AL GG P+E Q K Sbjct: 71 LLNTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGIKAALAYGGEPYEKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G DVLI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LEEGVDVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELF--YPSNEHKMALLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ IIF N K ++ L G V + G++ Q+ R +IL F +G + Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ + Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + IE+ IE + + D S+L Sbjct: 368 LPPIEEYIEHAIPVSDYDPSAL 389 >gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio proteoclasticus B316] gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus B316] Length = 711 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 220/369 (59%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + GL +++ AV + G+ +PIQ IP+++Q D+ G AQTGTGKTA+F +P+L Sbjct: 61 YDESGLDERIIRAVSEMGFEYMSPIQKAAIPVMIQGKDIIGQAQTGTGKTAAFGIPLLHQ 120 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ ++ ++L PTRELA Q AD+ + K + + V + GG Q K L Sbjct: 121 VDPANKHLQ---AVVLCPTRELAMQAADDIRDFAKYMFGIKVLAVYGGQDISRQIKALSN 177 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGR++DH R + M ++++LV+DEAD MLDMGF I+ I +P RQT Sbjct: 178 GVQIVVGTPGRVMDHMRRHTMKMKDVKVLVLDEADEMLDMGFREDIETILQGMPMERQTA 237 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM + + K+++ + ++ TP T IE + + K +L +L+ Sbjct: 238 LFSATMPEAILKITKTYQKSDAEYIKMTPKEITVAAIEQAYYRVPQKL--KEDVLVRLMD 295 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ +IFCN K+ V L SL+ +G+ +HG++ Q R +++ F+ G I +++ Sbjct: 296 YYNPARS-LIFCNTKRMVDQLAESLKGKGYLADGLHGDLSQNQRDTVMNLFRNGRINILI 354 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V VFN+D+P E Y+HRIGRTGRAGR G +FTLV ++ + I Sbjct: 355 ATDVAARGIDVSGVEAVFNYDIPEDIEYYVHRIGRTGRAGRSGMSFTLVGGREMYKLREI 414 Query: 361 EKLIEKKVD 369 EK+ K++ Sbjct: 415 EKVCHTKIE 423 >gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8] gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8] Length = 488 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F ++G ++ + G+ PT IQ ++ P+ L DV IAQTG+GKT SF LP + Sbjct: 63 FDEVGFPEYLMATIRAQGFPAPTAIQCQSWPMALSGRDVVAIAQTGSGKTISFALPAMLH 122 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+G N + + GG P Q Sbjct: 123 INAQPLLSPGDG----PIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQI 178 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L+RG +V+I TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 179 RDLQRGVEVVIATPGRLIDMLETGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 238 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL+FSAT ++QK++ +FL++ ++ + + A + + K+ L++ Sbjct: 239 DRQTLMFSATWPKDVQKLANDFLKDFIQVNIGSMELAANHNITQITEVCSDFEKRNKLIK 298 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L Q +IF K+ ++ L + G+ AIHG+ +QR R +L FK G Sbjct: 299 HLDQISSENAKVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRS 358 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +++A+D+A+RGLD+ D+G+V N+D PN E+YIHRIGRTGRAG G A+T E+ K Sbjct: 359 PILIATDVASRGLDVKDIGYVINYDFPNNCEDYIHRIGRTGRAGAKGTAYTYFTTENAK 417 >gi|299768643|ref|YP_003730669.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1] gi|298698731|gb|ADI89296.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1] Length = 644 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 226/376 (60%), Gaps = 13/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q + IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTAPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64 Query: 63 LE--------KGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112 L K R + V P L++ PTRELA QV+ + + ++ + +A ++GG+PF Sbjct: 65 LAGQETVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPF 124 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q ++L +GA V++ TPGR+LD NR ++ ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 125 AKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISE 183 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L +QTL+FSAT D + +++ +++P RI + T ST I T + K Sbjct: 184 LAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDG-FEHKK 242 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL L S + + ++F + +++ L L + G SV A+HG + Q R + L + + Sbjct: 243 KLLTHWL-SDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361 Query: 353 DIKHIDAIEKLIEKKV 368 + I A+E+ +E ++ Sbjct: 362 ERGKIRALEEYLEARL 377 >gi|54307767|ref|YP_128787.1| ATP-dependent RNA helicase SrmB [Photobacterium profundum SS9] gi|46912190|emb|CAG18985.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum SS9] Length = 419 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 221/377 (58%), Gaps = 9/377 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF++L L ++ A+ + GY +PT +Q + IP L DV A TGTGKTA+F+LPM+ Sbjct: 3 DFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPMIQ 62 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + R LIL PTRELA Q+AD+ KN +L + + GGI ++ + L Sbjct: 63 HLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHAELLG 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+++ TPGR++++ + IE L++DEADRMLDMGF ++ I + RQ+ Sbjct: 123 KTQDIVVATPGRLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVERINHECRWRRQS 182 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQL 238 LLFSAT+ + +++ SE L+ P +EVN+ PS H K ALL+Q+ Sbjct: 183 LLFSATLEGKGVREFSETILKEP--VEVNSAPSRRERKKIHQLYLRCDDMDHKLALLEQI 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q + I+F + + L L I G + Q SR +S F++G + + Sbjct: 241 LKHQ--AERSIVFVKTRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRT RAG+ G A +LV D I+ Sbjct: 299 LIATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIE 358 Query: 359 AIEKLIEKKV--DWLNG 373 + + +E++V ++NG Sbjct: 359 RVSRYMEEEVPERFING 375 >gi|294141997|ref|YP_003557975.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea DSS12] gi|293328466|dbj|BAJ03197.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea DSS12] Length = 430 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 154/410 (37%), Positives = 224/410 (54%), Gaps = 11/410 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L+P ++ A+ + GY + T +Q + IPL L D+ A+TGTGKTASF LP+L Sbjct: 1 MKFDALDLNPLLLQAIDECGYQQLTQVQSEVIPLALSGVDLMACAETGTGKTASFALPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K R LIL PTRELA QVA+N +YG+ +L + GG Q K L Sbjct: 61 ERLLKEDHESPCLRGLILTPTRELAIQVAENITRYGQFTSLKTLAVYGGANMNPQRKALN 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR+ D + L ++ + L+IDEADRMLDMGF+ I+ + SLV T Sbjct: 121 AGVDILVATPGRLFDFVGQHGLNLSEVTSLIIDEADRMLDMGFVRDIEKVKSLVSSQHLT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSAT +D ++ ++E L +P+ I V S A + ++ +K LL +L+ Sbjct: 181 HFFSATYSDPVKLLAEKMLNSPQWINVAQTRSAASVEQEIYL---VDKRRKAELLSELI- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F K++ +L L G HG+ Q +R + L FK G I++MV Sbjct: 237 GRNNWQQVLVFATTKESAEHLKSELSLDGIKCGVFHGDRTQGARNRTLEEFKSGKIRVMV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N ++P AE+YIHR+GRTGRAG G+A + V D + ++ I Sbjct: 297 ATDVAARGLDIQALPLVINLELPYGAEDYIHRVGRTGRAGLTGRAISFVCPSDEEMLEEI 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 E LIE K+ + L PL R+ + F+RRK Sbjct: 357 ESLIELKLPRIVLPGYELGAPLPA-------RYRETQDVTSTKKKFERRK 399 >gi|149714248|ref|XP_001504169.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX23 (DEAD box protein 23) (100 kDa U5 snRNP-specific protein) (U5-100kD) (PRP28 homolog) isoform 1 [Equus caballus] Length = 820 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573] gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603] gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603] gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573] Length = 416 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADL L P ++ A+ + G+ +PT +Q + IP L DV A TGTGKTA+F +P L Sbjct: 5 FADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQY 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QVA+ + KN L + + GG+ ++ L Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++ + + L+NP I+ P + I + K LL+++L Sbjct: 185 LFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F ++ + +L LEK I G + Q R ++ F+EG++ +++ Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNILL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV D + + Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361 Query: 361 EKLIEKKV 368 E+ I+++V Sbjct: 362 ERYIKEEV 369 >gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella multipartita DSM 44233] gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM 44233] Length = 607 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 209/382 (54%), Gaps = 19/382 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL ++ AV D G+ PT IQ IP +L D+ G+AQTGTGKTA+F LP+L Sbjct: 29 FDELGLPGTLLRAVKDLGFATPTAIQAAAIPALLAGRDITGVAQTGTGKTAAFGLPLLAA 88 Query: 63 LEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 ++ P + L+L PTRELA QVAD + +++V + GG F Q L Sbjct: 89 IDP------TPGVQALVLCPTRELAVQVADAISSFATALPDVSVIAIYGGTGFLPQRAAL 142 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA V++ TPGRI+DH RG L ++ + LV+DEAD ML MGF + I S P +RQ Sbjct: 143 RAGAQVVVGTPGRIIDHLERGTLDLSGLRFLVLDEADEMLRMGFAEDVDRILSDAPNSRQ 202 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM ++ ++ + NP I V+ SST +++ + + K L + L Sbjct: 203 AALFSATMPPAIRSIAAKHMTNPVDIAVSRQSSTVDSVRQIYA--VVPFRDKVDALTRFL 260 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F K+ + L +G S ++G++ Q+ R KI+ ++G + ++ Sbjct: 261 QVTEG-DAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRDGRLDVL 319 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + V NFD P E Y+HRIGRTGRAGR G A T ++ + A Sbjct: 320 VATDVAARGLDVDRIDLVVNFDAPGEPEAYVHRIGRTGRAGRTGTALTFFTPREMGRLRA 379 Query: 360 IEKLIEKKVDWLNGDLSSLNPP 381 IE+ G L + PP Sbjct: 380 IERAT-------RGTLEQIVPP 394 >gi|254884100|ref|ZP_05256810.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA] gi|319640865|ref|ZP_07995576.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A] gi|254836893|gb|EET17202.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA] gi|317387502|gb|EFV68370.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A] Length = 425 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 148/423 (34%), Positives = 240/423 (56%), Gaps = 19/423 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L V+ A+ + + TP+Q TIP++L+ D+ G+AQTGTGKTA+++LP+L Sbjct: 1 MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115 L KG +I+ PTRELA Q+ E G +Y L +VA+ G G+ FE + Sbjct: 61 NQLSKGGYPEDAINCVIMSPTRELAQQIDQQME--GFSYFLPASSVAVYGGNDGVRFEQE 118 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT++FSATM ++Q++++ L NP I++ + I+ ++ Q K ++ Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQ---KLGII 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L Q Q T + IIF + K V + + ++ +V +H +++Q R +I+ FK G Sbjct: 236 QSLFQDQ-TPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGR 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I +++A+D+ +RG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V++++ Sbjct: 295 INILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQT 354 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 AIE + + + + P E++ A + R G R++ NY Sbjct: 355 QFKAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGGSRKQGNYKG 406 Query: 416 QKS 418 +K+ Sbjct: 407 KKN 409 >gi|256422110|ref|YP_003122763.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] gi|256037018|gb|ACU60562.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] Length = 581 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 223/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F LGL ++ + D G++ PTPIQ K IP++L D G+AQTGTGKTA+F LP+L Sbjct: 4 FETLGLQEPILKGIQDLGFIAPTPIQEKAIPVLLGGDRDFVGLAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + R P+ LIL PTREL Q+ ++ + + K+ ++++ + GG Q + L+ Sbjct: 64 QID---IKQRHPQGLILCPTRELCLQITNDLKNFSKHLGDVSIVAVYGGSSIVQQLRDLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + N+ +V+DEAD ML+MGF I NI S P + T Sbjct: 121 RGVHIVVATPGRLLDIIERKAVNFANVRYVVLDEADEMLNMGFQEDINNILSNTPEEKTT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E++++++ ++ +P + V +S IEH + + +K A L++++ Sbjct: 181 WLFSATMPQEVRRIAQKYMSDPFELTVGNKNSGNANIEHEYYVVRPR--EKYAALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIF K + SL + G++ A+HG++ Q+ R K++ F+E ++Q++V Sbjct: 239 YNPEI-FGIIFTRTKIESQEIAESLIRDGYNADALHGDLTQQQRDKVMKRFREKSLQVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ +V HV N+++P+ ENY HR GRT RAG+ G + ++ D I I Sbjct: 298 ATDVAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGKSGISIAIITGRDTGKIRQI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERVIGKK 364 >gi|225011737|ref|ZP_03702175.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium MS024-2A] gi|225004240|gb|EEG42212.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium MS024-2A] Length = 553 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 225/373 (60%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F LGL+ +++ AV G+ PT +Q K IP++L+++ D+ +AQTGTGKTA+F PML Sbjct: 4 FKSLGLNTELLKAVEKLGFETPTEVQDKVIPILLEQNTDLVALAQTGTGKTAAFGFPMLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ A+ R + LIL PTREL Q+ + YG+ N+ + + GG + Q K+ Sbjct: 64 RID---AKQRTTQGLILAPTRELCLQITNEMGIYGQALKNINIVAIYGGANIQEQANKIR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D R + ++ I+ V+DEAD ML+MGF I++I + P ++ + Sbjct: 121 RGAQIVVATPGRLKDMIGRRLVDISAIQYCVLDEADEMLNMGFYEDIKDILTHTPKSKNS 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 LFSATM E+ +++ F++ P I V T +S+A+ I+H + VA +Y+ A++ Sbjct: 181 WLFSATMPPEVNTIAKKFMKKPIEITVGTKNSSAKNIDHQYFIVAARERYNALRAVV--- 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 S +T G++FC K + L + G+ AIHG++ Q R ++ +F++ IQL Sbjct: 238 --SMNTDLFGVVFCRTKIETQKVAEKLIQDGYKAAAIHGDLSQNQRDIVMQSFRKKRIQL 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ D+ HV N+ +P+ E Y HR GRTGRAG+ G + V K D + I Sbjct: 296 LIATDVAARGIDVDDLTHVINYQLPDEIETYTHRSGRTGRAGKLGTSIIFVTKSDRRKIK 355 Query: 359 AIEKLIEKKVDWL 371 IE ++ K+ L Sbjct: 356 LIENKLQTKLTEL 368 >gi|150005667|ref|YP_001300411.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482] gi|149934091|gb|ABR40789.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482] Length = 425 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 148/423 (34%), Positives = 240/423 (56%), Gaps = 19/423 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L V+ A+ + + TP+Q TIP++L+ D+ G+AQTGTGKTA+++LP+L Sbjct: 1 MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115 L KG +I+ PTRELA Q+ E G +Y L +VA+ G G+ FE + Sbjct: 61 NQLSKGGYPEDAINCVIMSPTRELAQQIDQQME--GFSYFLPASSVAVYGGNDGVRFEQE 118 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT++FSATM ++Q++++ L NP I++ + I+ ++ Q K ++ Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQ---KLGII 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L Q Q T + IIF + K V + + ++ +V +H +++Q R +I+ FK G Sbjct: 236 QSLFQDQ-TPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGR 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I +++A+D+ +RG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V++++ Sbjct: 295 INILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQT 354 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 AIE + + + + P E++ A + R G R++ NY Sbjct: 355 QFKAIENFLGRNIYKI--------PVPEELGEAPEYNPRSGAGRSNHKGGGSRKQGNYKG 406 Query: 416 QKS 418 +K+ Sbjct: 407 KKN 409 >gi|83645104|ref|YP_433539.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396] gi|83633147|gb|ABC29114.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396] Length = 393 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 141/379 (37%), Positives = 223/379 (58%), Gaps = 11/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+ L L PK+ A+ D + + TPIQ +T+P LQ D+ G AQTGTGKTA+F++ +L Sbjct: 14 FSSLNLHPKLEQAIRDLNFERCTPIQGQTLPHTLQGADLIGQAQTGTGKTAAFLITILQR 73 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 IL + R PR L++ PTRELA Q+ + K+ L + +IGG + Q Sbjct: 74 LVSNPILTEERFSSE-PRALVVAPTRELALQIEKDACALAKHLKLNIISVIGGTQLDRQR 132 Query: 117 KKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +KL + D+LI TPGR+LDH + ++ +E+LV+DEADRMLDMGFIP ++ I P Sbjct: 133 RKLRDEAVDLLIATPGRLLDHLTSADIYLDQVEVLVLDEADRMLDMGFIPDVKRIVRATP 192 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT +++++ ++ + + P + + A+T++ + S K LL Sbjct: 193 RERQTLLFSATFSEDIKNLARRWTEEPVEVMLAVDHLPAKTVDQRVY--MVESSAKRKLL 250 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL+ +T + I+FCN++ +L +L + I G + Q+ R+K L F+ G Sbjct: 251 VNLLKDSET-RRVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLKTLERFRRGD 309 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +++VA+D+A RGL I V HV N+++P+ E+Y+HRIGRTGRAG G + + ++D Sbjct: 310 FRVLVATDVAGRGLHIDGVTHVVNYNLPDDPEDYVHRIGRTGRAGATGVSISFACEDDSF 369 Query: 356 HIDAIEKLIEKKVDWLNGD 374 I +EK + ++ ++ D Sbjct: 370 LIPELEKYLGHELALIHPD 388 >gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3 [Macaca mulatta] Length = 455 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 221/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ KPT I I+ IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K L +L Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL- 258 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 379 EHLIGKKL 386 >gi|229588539|ref|YP_002870658.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens SBW25] gi|229360405|emb|CAY47262.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] Length = 407 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 222/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ D G+ TPIQ + + L D G AQTGTGKTA+F++ ++T Sbjct: 20 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 79 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 80 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 139 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG + ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 140 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 199 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + +E +E A + K LL Sbjct: 200 AERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAG--ADKYKLL 257 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 258 YNLV-NDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 316 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 317 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 376 Query: 356 HIDAIEKLIEKKV 368 + +IE L+ +K+ Sbjct: 377 QLPSIETLLGRKI 389 >gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080] gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080] Length = 465 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 209/364 (57%), Gaps = 6/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + A+ GY T +Q +++P +L+R DV A+TG+GKTA+F + +L Sbjct: 6 FSSLPLNPAQLDALTGLGYANMTQVQAQSLPPILKRQDVIIQAKTGSGKTAAFAIGLLHH 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + +++ PTRELA QV + + N+ V +L GG PF AQ L Sbjct: 66 LNP---RFFGVQAVVMCPTRELAEQVGEATRQLASRMSNVKVVMLCGGKPFGAQRDSLHH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI DH RG L + + V+DEADRMLDMGF + IT+ +P RQTL Sbjct: 123 GAHIVVGTPGRIQDHLQRGTLELKGVTTFVLDEADRMLDMGFADVMAEITAKLPADRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 L SAT D+++K+S + +NP +I V+ E + ++ + ALL L Sbjct: 183 LLSATFPDDIKKISRSIQKNPIQITVDAEVVHDEVVLEQVFFEVQKHERNVALLA--LFE 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 N ++FCN KK + L + AIHG+++QR R ++L F + ++VA Sbjct: 241 HYRPANAMVFCNTKKQCAEVARFLREHDIEAAAIHGDLEQRERDQVLLQFANNSCPVLVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 SD+AARGLDIP + V NF++P A+ Y+HRIGRTGRAG GKAF++V + + IE Sbjct: 301 SDVAARGLDIPSLEMVVNFELPRDADTYVHRIGRTGRAGESGKAFSIVTPPEAPRMRVIE 360 Query: 362 KLIE 365 ++ Sbjct: 361 DYLK 364 >gi|302387031|ref|YP_003822853.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1] gi|302197659|gb|ADL05230.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum WM1] Length = 485 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 228/398 (57%), Gaps = 12/398 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + +S + A+ GY PT +Q + IP L+++D+ AQTG+GKTA++ +P+ + Sbjct: 4 FRNYIISEDIGKALKGLGYDIPTEVQARVIPAALEKNDLMVKAQTGSGKTAAYAIPICEL 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ LIL PTRELA QV ++F G+ L A + G F + +L++ Sbjct: 64 IEWLENK---PQALILTPTRELAVQVKEDFTNIGRFKRLKAAAIYGRHSFSMEKAELKQK 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR++DH +G L + I LVIDEADRMLDMGFI ++ I +P R T+L Sbjct: 121 THVVVGTPGRVMDHIKKGTLPLTKINYLVIDEADRMLDMGFIKQVEAIMKELPMERMTML 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E++ +S +++++P I+V+ + T I+H Y + K LL ++ + Sbjct: 181 FSATMPQEVKNMSLDYMRDPINIDVSEANITTSDIDHFLY--YVKEEDKFELLNDVMIVE 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + +IFC+ K V +C L+ G+ +HG ++Q R+ + FK G + ++A+ Sbjct: 239 KP-DSCMIFCSTKDRVDIVCERLKNFGYPCNKMHGGMEQADRLSSIKGFKRGEYRYLIAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 DLAARG+DI + V N+D+P ENY+HR GRTGRAG+ GKA + + +++ I++ Sbjct: 298 DLAARGIDIETISMVINYDIPLDKENYVHRPGRTGRAGQKGKAVSFLDPAQTRYLHDIQE 357 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400 LI + L P E++ + + + K N +P Sbjct: 358 LIGFSIQELP------KPAKEEVSVQKPSFDEKMNAVP 389 >gi|260774135|ref|ZP_05883050.1| ATP-dependent RNA helicase RhlE [Vibrio metschnikovii CIP 69.14] gi|260611096|gb|EEX36300.1| ATP-dependent RNA helicase RhlE [Vibrio metschnikovii CIP 69.14] Length = 383 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 128/292 (43%), Positives = 195/292 (66%), Gaps = 3/292 (1%) Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELAAQ+ ++ YG++ L+ A++ GG+ Q +++ +GAD+L+ TPGR+ Sbjct: 2 RALILTPTRELAAQIQESILVYGRHLPLSSAVVFGGVKVNPQMQRMCKGADILVATPGRL 61 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193 +D +N+ + + +EILV+DEADRMLDMGFI I+ I L+P RQ LLFSAT + E+++ Sbjct: 62 MDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPERRQNLLFSATFSAEIRE 121 Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253 +++ + NP I V+ +STA T+E C A KK A+L +L++ + + ++F Sbjct: 122 LAKGLVNNPVEISVSPANSTARTVEQCIYP--ADVKKKPAMLVKLVK-EGNWQQVLVFMR 178 Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313 K L L +QG + AIHGN Q +R + L++FK G I+++VA+D+AARG+DIP Sbjct: 179 TKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGDIRILVATDIAARGIDIPQ 238 Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 + V NF++P AE+Y+HRIGRTGRAG GKA + V + + + AIE+LI+ Sbjct: 239 LPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISFVCELEAPELFAIERLIQ 290 >gi|319760253|ref|YP_004124191.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str. BVAF] gi|318038967|gb|ADV33517.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str. BVAF] Length = 617 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 217/363 (59%), Gaps = 9/363 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL+ ++ + GY KP PIQ K IPL+L+ HD+ GIA TG+GKTA+F+LP+L Sbjct: 8 FSNLGLNACLISMLKKVGYKKPLPIQEKCIPLLLKGHDILGIAHTGSGKTAAFLLPLLQS 67 Query: 63 LEKGRARVRMPRTLILEPTRELA---AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + A + LI+ PTRELA QV +F KY ++VA+L GG + Q L Sbjct: 68 ININTASTQ---GLIITPTRELAIQIGQVCIDFIKYISG--ISVAILYGGQNYNIQLNDL 122 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + +++ TPGR+LDH NRG ++ ++IL+IDEAD ML MGFI ++ I + VP RQ Sbjct: 123 RKNPHIIVGTPGRLLDHLNRGTANISKLKILIIDEADEMLRMGFIEDVKLIVNKVPVDRQ 182 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T FSAT + ++K+S F+ PK + + I+ F K L + L Sbjct: 183 TACFSATFPENIKKISYKFMNTPKEVCICNIDIHPPDIKQNFWLVKRGMITKHEALIRFL 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D I+F K + + LE G++ A++G+++Q R K +S K GT+ ++ Sbjct: 243 EIED-YDAAIVFVRTKSETLRISEILENFGYNSAALNGDMNQSIRQKTVSRLKYGTLDIL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+AARGLDI + V N+DVPN +YIHRIGRTGRAGR GK+ V +++ +++ Sbjct: 302 ISTDVAARGLDIQRISLVINYDVPNNYNSYIHRIGRTGRAGRIGKSLLFVERQEYNLLNS 361 Query: 360 IEK 362 I++ Sbjct: 362 IKR 364 >gi|326429718|gb|EGD75288.1| DEAD/H box polypeptide 3 [Salpingoeca sp. ATCC 50818] Length = 710 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 150/391 (38%), Positives = 220/391 (56%), Gaps = 23/391 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF D GL+ V + AGY KPTP+Q +IP+V R D+ AQTG+GKTA+F++P+++ Sbjct: 219 DFFDCGLADVVTNNLRLAGYTKPTPVQKYSIPIVTARRDLMACAQTGSGKTAAFLVPIIS 278 Query: 62 -ILEKGRARV----------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 +LE G V + P LIL PTRELA+Q+ K+ + + GG Sbjct: 279 RVLETGPVEVPETARRMEGKQFPVCLILAPTRELASQIFAEARKFAYRAKIRACCVYGGT 338 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 F +Q + L+RG VL+ TPGR++D RG++ M+ I LV+DEADRMLDMGF P I+ I Sbjct: 339 DFRSQFRDLQRGCQVLVATPGRLVDLLERGRIGMDAIRFLVLDEADRMLDMGFEPQIRRI 398 Query: 171 ----TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY- 225 T P RQTL+FSAT ++Q ++ +FL + I V ST E I F Y Sbjct: 399 VEQDTMPPPGVRQTLMFSATFPKDIQVLARDFLHDCVSISVGRIGSTTENI---FQKVYW 455 Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 Q +K L L+ + + ++F K+ L L Q F +IHG+ Q R Sbjct: 456 VQEHEKRQTLLDLISAASEKELVLVFVETKRGADALEDFLIHQQFPASSIHGDRTQEQRE 515 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 + L++F++G ++VA+ +AARGLDIP+V V NFD+P+ + Y+HRIGRTGR G G+A Sbjct: 516 RALASFRDGYTPILVATAVAARGLDIPNVKRVINFDLPSDIDEYVHRIGRTGRVGHKGQA 575 Query: 346 FTLVAKEDIK----HIDAIEKLIEKKVDWLN 372 + ++ +D + + ++ DWL Sbjct: 576 ISFFNDKNANVARDLLDTLRECKQEVPDWLE 606 >gi|317494807|ref|ZP_07953218.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917132|gb|EFV38480.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 429 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 156/424 (36%), Positives = 241/424 (56%), Gaps = 16/424 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L P VV A+ G+ TPIQ +PL + DV G AQTGTGKT +F+ Sbjct: 11 FADFALHPTVVKALESKGFHNCTPIQALALPLTVNGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR LI+ PTRELA Q+ + E L + L GG ++ Q K Sbjct: 71 LLTHPVAENRKTNQPRALIMAPTRELAVQIHSDAEALAHETGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ +G + + I+++V+DEADRM D+GFI I+ + +P T Sbjct: 131 LESGVDILIGTTGRLIDYAKQGHIDLGCIQVVVLDEADRMFDLGFIKDIRWLFRRMPATN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L +FSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMMFSATLSYRVRELAFEHMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGN 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + TL +E + Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSITLACEEYVL 366 Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 ++ AIE IE V N + L+ L P +++ + N+ ++ + P+++ G R+ + Sbjct: 367 NLPAIEAYIEHSIPVSKYNSEALLTDLPAP-KRLTRPRSNNGQRRSSGPRRNNGSMRQSR 425 Query: 412 NYSS 415 +S Sbjct: 426 KRTS 429 >gi|226325568|ref|ZP_03801086.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758] gi|225206051|gb|EEG88405.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758] Length = 531 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 226/369 (61%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++GLS ++ AV G+ + +PIQ K IP ++ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FEEMGLSEEIQKAVRYMGFEEASPIQAKAIPAMISGIDLIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 EK +++ + ++L PTRELA QVAD N +Y + + V + GG Q + L Sbjct: 64 -EKVDPKLKKLQAIVLCPTRELAIQVADEIRNLSRY--MHGIKVLPIYGGQDIVKQIRSL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++I TPGR++DH R + ++ + +V+DEAD ML+MGF I+ + S VP RQ Sbjct: 121 KSGTQIVIGTPGRVMDHMRRKTMKLDFVHTVVLDEADEMLNMGFREDIEFVLSGVPEERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++++ F N K I+V T IE + + KK +L +LL Sbjct: 181 TVLFSATMPKPIMEITKKFQNNAKVIKVTKKELTVPNIEQYYYDVKPK--KKEEVLSRLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++FCN KK V L ++L +G+ +HG++ Q R +++ F+ G +++ Sbjct: 239 DIY-SPRLSVVFCNTKKQVDLLVNALLGRGYFAAGLHGDMKQEQRDRVMQGFRTGKTEIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V VFN+D+P E Y+HRIGRTGRAGR G+AF+ V+ +++ + Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRAFSFVSGKEVYKLKE 357 Query: 360 IEKLIEKKV 368 I++ + K+ Sbjct: 358 IQRYCKTKI 366 >gi|303237006|ref|ZP_07323578.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN] gi|302482786|gb|EFL45809.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN] Length = 382 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 225/368 (61%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+ +P P+Q IP +L +DV +AQTGTGKTA++ +P Sbjct: 4 FEELGVSEEIRHAIEELGFEQPMPVQEAVIPYLLGNGNDVIALAQTGTGKTAAYGIP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +L+K + + LIL PTREL Q+AD+ + K L VA + GG E Q+++L Sbjct: 61 VLQKVDPTKKETQALILSPTRELCLQIADDLSDFSKYIGGLHVAAVYGGASIEMQSRQLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA +++ TPGR++D RG + N+ +V+DEAD ML+MGF I I +P R T Sbjct: 121 KGAQIIVATPGRLIDLMKRGVAKLENVNNVVLDEADEMLNMGFTESINAIFEGIPSERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++K+++++L + K I V + + AE + H + +A+ K L++++ Sbjct: 181 LLFSATMSKEIEKIAKSYLHDYKEIVVGSRNEGAEKVNHIYYMVHAK--DKYLALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ IIFC K + L + G++ A+HG++ Q+ R + F++ +Q +V Sbjct: 239 YYPSI-FAIIFCRTKVETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRQHNVQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + +++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERYKVREI 357 Query: 361 EKLIEKKV 368 EK+I+ ++ Sbjct: 358 EKIIQPQI 365 >gi|313159432|gb|EFR58795.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp. HGB5] Length = 653 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 214/358 (59%), Gaps = 7/358 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPML 60 DF+ LGLS +++ AV G+ PT IQ TIP L+ + +D+ +QTGTGKTA++ LP+L Sbjct: 6 DFSALGLSEQMLTAVRAKGFETPTAIQKLTIPHLLTKTNDIIAQSQTGTGKTAAYGLPIL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE R V+ +IL PTRELA Q A+ Y + L++ + GG Q ++L Sbjct: 66 QSLEPARGPVQ---AIILVPTRELALQAAEELLSYNREKRLSITAIYGGAAMSEQLRRLA 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ TPGR+ DH RG L + N+ LV+DEAD ML+MGF+ ++ I S R+ Sbjct: 123 KGVDIVVGTPGRVRDHIRRGTLKLENVRYLVLDEADEMLNMGFVEDVEEIMSHTSEERRV 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + + ++S+ ++++ + + V T + E + + + K L +++ Sbjct: 183 LLFSATMPERIIRLSKTYMRDTEIVRVENKQLTTDLTEQIYFEV--READKFDALTRIID 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIF K L +G++ +HG++ Q R KIL F++ ++ ++V Sbjct: 241 VEPEF-YGIIFARTKIGADETVSRLAARGYAAEVLHGDVSQAQREKILRKFRDRSVNILV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 A+D+AARG+D+ ++ HV N+ +P +E+Y+HRIGRTGRAG+ G A T V+ + + ++ Sbjct: 300 ATDVAARGIDVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLN 357 >gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879] gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879] Length = 518 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 142/359 (39%), Positives = 210/359 (58%), Gaps = 7/359 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL KV+ + +AG+ P+PIQ K IP +L+R DV AQTGTGKTA+F LP+L Sbjct: 22 FRALGLKDKVLKGIKEAGFTTPSPIQEKAIPPILERRDVIAQAQTGTGKTAAFALPILHS 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ + L++ PTRELA Q++D K GK + GG + Q + +E+ Sbjct: 82 LKNDSS----IEALVITPTRELAMQISDEVFKLGKFLKTKTVCVYGGQSVKKQLELIEKK 137 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 VLI TPGR+LDH +L ++V+DE+D MLDMGFI I+ I +P QTLL Sbjct: 138 PQVLIATPGRLLDHLKNERLKNFAPNVVVLDESDEMLDMGFIDDIEEIFQYIPNNAQTLL 197 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM ++++++ L +P I++ + S+T I + +++ L +L+ ++ Sbjct: 198 FSATMPARIKQLADKILYDPVHIKIQSSSTTNADIAQRYYII--NENERNEALTRLIDTE 255 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K+ IIF KK + L+ +G+ A+HG++DQR R + FK ++VA+ Sbjct: 256 SPSKS-IIFIRTKKEADEVNSYLQNKGYKSTALHGDMDQRMRRDSVQAFKGKEADILVAT 314 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 D+AARGLDI +V HVFN+ +P E+Y+HRIGRTGRAG G A TL + K + I+ Sbjct: 315 DVAARGLDIRNVSHVFNYHIPLNIESYVHRIGRTGRAGSKGVAITLATPLEYKDLKKIQ 373 >gi|282880561|ref|ZP_06289268.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis CRIS 5C-B1] gi|281305664|gb|EFA97717.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis CRIS 5C-B1] Length = 627 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 230/377 (61%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+V P P+Q + IP +L ++DV +AQTGTGKTA++ LP+L Sbjct: 4 FEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + +IL PTREL Q+AD+ + + K NL V + GG Q L+ Sbjct: 64 KID---VASKHTQAIILSPTRELCLQIADDLKDFAKYIKNLHVEPVYGGASIVTQIHALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR++D NRG ++++ +V+DEAD ML+MGF I I + VP R T Sbjct: 121 HGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAGVPDDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++K+++ +L++ K I V + + AE + H + A+ K L++++ Sbjct: 181 LLFSATMSKEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYMVNAR--DKYLALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K + L K G++ A+HG++ Q+ R + F++ QL+V Sbjct: 239 YYPRI-FAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVTQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ ++ HV N+ +P+ ENY HR GRTGRAG+ G + ++ + + A+ Sbjct: 298 ATDVAARGLDVDELTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSKVRAV 357 Query: 361 EKLIEKKVDWLNGDLSS 377 EK+I K ++++G L + Sbjct: 358 EKIIGK--EFVDGTLPT 372 >gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451] gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451] Length = 416 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADL L P ++ A+ + G+ +PT +Q + IP L DV A TGTGKTA+F +P L Sbjct: 5 FADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQY 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QVA+ + KN L + + GG+ ++ L Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++ + + L+NP I+ P + I + K LL+++L Sbjct: 185 LFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F ++ + +L LEK I G + Q R ++ F+EG++ +++ Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNILL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV D + + Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361 Query: 361 EKLIEKKV 368 E+ I+++V Sbjct: 362 ERYIKEEV 369 >gi|262376303|ref|ZP_06069533.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145] gi|262308904|gb|EEY90037.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145] Length = 383 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 222/375 (59%), Gaps = 14/375 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P + A+ G+ TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLNLHPNLKKAIDALGFTTMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLISIMND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K L V L+GG+ F+ Q Sbjct: 65 LLNNPIQEQRYRGE-PRALILAPTRELALQIESDAQDLAKYAGLNVVTLLGGVDFDKQKN 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L + D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 QLNKAPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPR 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCA 233 RQTL+FSAT + ++ +++ +L P +E+ T +E ++ A K Sbjct: 184 KEQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKAD---KYK 240 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LLQ++L+ + ++ +IF N++ V L L++ G+ V + G I Q R+K+L FK Sbjct: 241 LLQEILRDE-PIEKVMIFANRRDQVRKLYDHLKRDGYKVVMLSGEIAQDKRLKMLDQFKN 299 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + +A++D Sbjct: 300 GKHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTSGVSISFLAEDD 359 Query: 354 IKHIDAIEKLIEKKV 368 ++ IEK I +K+ Sbjct: 360 AFYLPEIEKAIGQKL 374 >gi|284038209|ref|YP_003388139.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74] gi|283817502|gb|ADB39340.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74] Length = 447 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 150/373 (40%), Positives = 218/373 (58%), Gaps = 6/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ ++ A+ D GY PT IQ K +V+ DVCGIAQTGTGKT +++LP L Sbjct: 1 MTFDELNLNKPLLNALNDLGYTTPTTIQQKVFSVVMSGQDVCGIAQTGTGKTFAYLLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ ++ R P+ LI+ PTREL QV D +K NLTV + GG+ +AQ ++ Sbjct: 61 RQMQ--FSKDRQPQLLIIVPTRELVVQVVDAVKKLTTYMNLTVVGVYGGVNMKAQTVEIM 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGR+ D G L I+ LVIDE D ML++GF ++ + L+P RQ Sbjct: 119 QGLDVLVATPGRLADFMLGGTLKTKGIKKLVIDEFDEMLNLGFRAQLKVVLDLLPPKRQN 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+TD++ ++ ++ P R+E + E I+ Y+ K LL LL Sbjct: 179 LLFSATLTDDVDQLVNDYFNKPVRVEAAPMGTPLEKIDQSGYRVPNFYT-KINLLTLLLN 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQL 298 M ++F K+ L LE GF V IH N Q R + ++NFK GT ++ Sbjct: 238 RNAAMTKVLVFVATKQLADQLFEQLE-SGFPDQVGVIHSNKAQNKRFEAVNNFKAGTYRI 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+ ARG+D+ DV HV NFD+P+ ENYIHRIGRTGRA R G A + + + + + Sbjct: 297 LIATDIIARGIDVTDVSHVVNFDLPDLPENYIHRIGRTGRADREGIAVSFITESAREAQE 356 Query: 359 AIEKLIEKKVDWL 371 AIE+L+ + + L Sbjct: 357 AIEQLMNQPIPML 369 >gi|301783663|ref|XP_002927245.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Ailuropoda melanoleuca] gi|281343724|gb|EFB19308.1| hypothetical protein PANDA_017010 [Ailuropoda melanoleuca] Length = 820 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 228/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|221064954|ref|ZP_03541059.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1] gi|220709977|gb|EED65345.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1] Length = 469 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 152/392 (38%), Positives = 226/392 (57%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LSP+++ + GY + TPIQ ++PL LQ D+ A TG+GKTA+F LPM+ Sbjct: 16 FSALPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDR 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + L+L PTRELA QVA + + N+ V + GG+P Q LE Sbjct: 76 LNP---RWFAVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLEN 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++D RGKL + N++ LV+DEADRMLDMGF+ I+ + P RQTL Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPVDRQTL 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + ++ F+++P+ ++V T S A IE + A+ +K A + +LL + Sbjct: 193 LFSATYPEGIASLASRFMRDPQTVKVATQHS-AGKIEQRWYEVGAR--EKVATVARLL-A 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ I FCN K+ ++ L+ QGFS A+ G ++QR R ++L F + ++VA Sbjct: 249 HFRPESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI D+ V N DV E +IHRIGRTGR G A LV+ +++ + IE Sbjct: 309 TDVAARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIE 368 Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDI 387 +L + + D L PP+ I I Sbjct: 369 QLQGRASQFFPVDELTPAAGGGLLPPMMTIQI 400 >gi|113971087|ref|YP_734880.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113885771|gb|ABI39823.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 461 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 218/364 (59%), Gaps = 4/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY + T +Q + IPL L+ D+ AQTGTGKTASF LP+L Sbjct: 1 MKFDTLGLSSPILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K + + R L++ PTRELA QV N +KY + L + GG Q K +E Sbjct: 61 EQLSKQPSDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+ D + L ++ + LVIDEADRMLD+GF+ I+ + L+ QT Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSTVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT +D ++++S L P+ + V ++TA T+E + +K LL +L+ Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPEWVNV-AENATASTVEQ--LVYRVDKRRKAELLSELV- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F + K+ +L L G S HG+ Q +R ++L +FK G ++++V Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N ++P AE+Y+HRIGRTGRAG G+A + V+ D + + I Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356 Query: 361 EKLI 364 E LI Sbjct: 357 EALI 360 >gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299] gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299] Length = 639 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 21/365 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FAD+ + + + PTP+Q IP+ L+R D+ AQTG+GKTA+F P++ Sbjct: 187 FADIDFGAAINRNIQRCKFKNPTPVQKYAIPISLKRRDLMACAQTGSGKTAAFCFPIIHG 246 Query: 62 ILEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 I+++G R P L+L PTRELA Q+ + K+ + ++ GG P Q Sbjct: 247 IIDRGLQAPRGGRKTFPIALVLSPTRELAIQIHEESRKFAYQTGVASVVVYGGAPAAQQF 306 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--- 173 +++ERG D+LI TPGR++D +R K+ + I+ L +DEADRMLDMGF P I+ I Sbjct: 307 REMERGCDMLIATPGRLIDLVDRAKISLERIQYLALDEADRMLDMGFEPQIRQIVEQRGM 366 Query: 174 -VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST----AETIEHCFVATYAQY 228 P RQT+LFSAT E+Q+++ +FLQ+ + V S+ +TIE+ Y Sbjct: 367 PPPGDRQTMLFSATFPKEIQRMASDFLQDYIFLTVGRVGSSHTLITQTIEYV-----QSY 421 Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 + KC +L L+ + + ++F K+ L L +QGF +IHG+ Q+ R L Sbjct: 422 NDKCQMLMDLVHAVQGLT--LVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQEREWAL 479 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 +F+ G ++VA+D+AARGLDIP V HV NFD+P+ ++Y+HRIGRTGRAG+ G A Sbjct: 480 KSFRSGKTPILVATDVAARGLDIPHVTHVINFDLPSDVDDYVHRIGRTGRAGKKGLATAF 539 Query: 349 VAKED 353 +D Sbjct: 540 FTDKD 544 >gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881] gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881] Length = 551 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 222/371 (59%), Gaps = 12/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL ++ A+ G+ +P+PIQ + IPL+L HD+ G AQTGTGKTA+F LP+L Sbjct: 8 FASLGLPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLAR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ +R P+ LIL PTRELA QVA E++ K+ L V + GG + Q K L Sbjct: 68 LDPA---LREPQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLKGLRG 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR++DH RG + +NN++ LV+DEAD ML MGFI ++ + P Q Sbjct: 125 GAQVIVGTPGRVMDHMERGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLA 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 LFSATM ++KV++ L+ PK + + N ++T TI + VA + C +L+ Sbjct: 185 LFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEA- 243 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + D + ++F K+ + L L ++G A++G+I Q+ R K + K+ L Sbjct: 244 -EEHDAV---LVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDL 299 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+ ARGLD+P + HV N+D+P E Y+HRIGRTGRAGR G A VA+ + + Sbjct: 300 LIATDVVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLR 359 Query: 359 AIEKLIEKKVD 369 IE++ + ++ Sbjct: 360 QIERITRQSIE 370 >gi|288929803|ref|ZP_06423646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp. oral taxon 317 str. F0108] gi|288328904|gb|EFC67492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp. oral taxon 317 str. F0108] Length = 636 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 228/377 (60%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S + A+ + G+ +P P+Q + IP +L +DV +AQTGTGKTA++ +P Sbjct: 4 FKELGVSEPICRAIEELGFEQPMPVQEEVIPYLLGNGNDVIALAQTGTGKTAAYGIP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +L+K + + LIL PTREL Q+AD+ + K L V + GG E Q ++L Sbjct: 61 VLQKVNPEEKHTQALILSPTRELCLQIADDLADFSKYVQGLHVVPVYGGASIEMQIRQLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA +++ TPGR++D RG ++N+ +V+DEAD ML+MGF I I VP R T Sbjct: 121 KGAQIIVATPGRLIDLMKRGVAQLDNVNNVVLDEADEMLNMGFTESINAIFEGVPADRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++K+++N+L + K I V + + AE + H + A+ K L++L+ Sbjct: 181 LLFSATMSREIEKIAKNYLNDYKEIVVGSRNEGAEKVNHIYYMVNAK--DKYLALKRLVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K + L + G++ A+HG++ Q+ R + F+ +Q +V Sbjct: 239 FYPRI-FAIIFCRTKLETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRNHNVQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + +++ + + AI Sbjct: 298 ATDVAARGLDVDDLTHVVNYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERSKVRAI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 EK+I+K ++++G L + Sbjct: 358 EKIIQK--EFVDGTLPT 372 >gi|326430393|gb|EGD75963.1| vasa [Salpingoeca sp. ATCC 50818] Length = 873 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 141/351 (40%), Positives = 207/351 (58%), Gaps = 3/351 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA G ++ + G+ +PTPIQ + +P V+ DV GIA+TG+GKTA+FV PM+ Sbjct: 294 VSFAYFGFDDVMMQLIQRQGFAQPTPIQAQAVPTVMSGRDVIGIAETGSGKTAAFVWPMI 353 Query: 61 T-ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 IL++ R P ++L PTREL Q++ N +Y K+YN+ VA + GG Q K Sbjct: 354 KHILDQPDLKRGDGPIAVLLAPTRELCMQISQNTRRYAKHYNIRVATVYGGGSRYEQVKT 413 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G +V++ TPGR++D + + LV+DEADRM DMGF + +I + R Sbjct: 414 LKDGCEVVVATPGRLIDLIKDKATNLRRVTYLVLDEADRMFDMGFSLQVNSIINHTRPDR 473 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLF+AT +++K++ L+NP RI V T IE V + K L+ Sbjct: 474 QTLLFTATFKKKVEKLARQALRNPVRIVVGTVGKANTDIEQR-VEIMQDTASKWGWLKAH 532 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + N ++F N+K + L S+ GF IHG+IDQ +R ++LS FK+ T+++ Sbjct: 533 LVEMQSAGNVLVFVNKKADAETLHESMVAAGFQAVVIHGDIDQITRQEVLSKFKKQTVRI 592 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +VA+D+AARGLDIP V +V NFD + + HRIGRTGRAG G A+TL+ Sbjct: 593 LVATDVAARGLDIPSVRNVVNFDAAMSIDTHTHRIGRTGRAGVKGTAWTLL 643 >gi|73996610|ref|XP_862993.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 3 [Canis familiaris] gi|119578414|gb|EAW58010.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_a [Homo sapiens] Length = 634 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 152/422 (36%), Positives = 228/422 (54%), Gaps = 43/422 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 207 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 266 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 267 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 326 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 327 FRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 386 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 387 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 446 Query: 211 SSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269 E +E F+ + ++ KK LL L Q D IIF NQKK L SLEK G Sbjct: 447 GKPHERVEQKVFLMSESEKRKK--LLAILEQGFDP--PIIIFVNQKKGCDVLAKSLEKMG 502 Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329 ++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+Y Sbjct: 503 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 562 Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389 IHRIGRTGRAG+ G A T + KED +++ I L +SS P L AQ Sbjct: 563 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDAQ 616 Query: 390 HN 391 H Sbjct: 617 HK 618 >gi|260550927|ref|ZP_05825133.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624] gi|260406054|gb|EEW99540.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624] Length = 383 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K NL + L+GG+ F+ Q K Sbjct: 65 LLNNPVKEQRFRGE-PRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKK 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L+ D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ ++ +L P +E+ T +E Q K L Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ ++ + +IF N++ V L L+K G+ V + G I Q R+K+L FK+G Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 301 KHNIMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 361 FYLPEIEKAIGKKL 374 >gi|254230204|ref|ZP_04923597.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25] gi|262392870|ref|YP_003284724.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25] gi|151937289|gb|EDN56154.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25] gi|262336464|gb|ACY50259.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25] Length = 439 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 221/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P+V+ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLKPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E ++ L AL GG ++ Q K Sbjct: 71 LLTTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAEALTESTGLKTALAYGGESYDKQLNK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+LI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + P+ + V T I+ Y K ALLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMNTPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ IIF N K ++ L G V + G++ Q+ R KIL F +G + Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E + Sbjct: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + AIE+ IE + D S+L Sbjct: 368 LPAIEEYIEHTIPVSEYDSSAL 389 >gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52] gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395] gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587] gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3] gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39] gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21] gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis VL426] gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)] gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51] gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226] gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27] gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93] gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385] gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52] gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587] gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3] gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51] gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395] gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39] gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226] gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395] gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)] gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis VL426] gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21] gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1] gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27] gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93] gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385] gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3894-4] Length = 423 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADL L P ++ A+ + G+ +PT +Q + IP L DV A TGTGKTA+FV+P L Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QVA+ + KN L + + GG+ ++ L Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++ + + L++P ++ P + I + K LL+++L Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F ++ + +L LEK I G + Q R +S F+EG + +++ Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV D + + Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361 Query: 361 EKLIEKKV 368 E+ I+++V Sbjct: 362 ERYIKEEV 369 >gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80] gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457] gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33] gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2] gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286] gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33] gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9] gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236] gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10] gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101] gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1] gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757] gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80] gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457] gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33] gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2] gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9] gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33] gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286] gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236] gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10] gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101] gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1] gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757] Length = 423 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADL L P ++ A+ + G+ +PT +Q + IP L DV A TGTGKTA+FV+P L Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QVA+ + KN L + + GG+ ++ L Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++ + + L++P ++ P + I + K LL+++L Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F ++ + +L LEK I G + Q R +S F+EG + +++ Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV D + + Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361 Query: 361 EKLIEKKV 368 E+ I+++V Sbjct: 362 ERYIKEEV 369 >gi|255319460|ref|ZP_05360674.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82] gi|262378516|ref|ZP_06071673.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens SH164] gi|255303400|gb|EET82603.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82] gi|262299801|gb|EEY87713.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens SH164] Length = 383 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 229/376 (60%), Gaps = 16/376 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L PK+ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLNLHPKLKKAIDALGFKEMTPIQQKVLNYTLAGHDAIGRAQTGTGKTAAFLISVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R R LIL PTRELA Q+ + ++ K +L + L+GG+ F+ Q K Sbjct: 65 LLNNPIKEQRYRGE-ARALILAPTRELALQIESDAKELTKFTDLHLVTLLGGVDFDKQKK 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L++ D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 QLDQNFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPR 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKC 232 RQTL+FSAT + ++ +++ +L P +E+ T +E VA +Y Sbjct: 184 KEQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVANRDKYK--- 240 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LLQ++L+ + ++ +IF N++ V L L+K G+ V + G I Q R+K+L FK Sbjct: 241 -LLQEILRDE-PIEKVMIFANRRDQVRRLYDHLKKDGYKVVMLSGEIAQDKRLKMLDQFK 298 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G +M+A+D+A RG+ + +V HV NF +P ++++Y+HRIGRTGRAG G + + ++++ Sbjct: 299 NGKHNIMIATDVAGRGIHVDNVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSED 358 Query: 353 DIKHIDAIEKLIEKKV 368 D ++ AIEK I +K+ Sbjct: 359 DAFYLPAIEKAIGQKL 374 >gi|86134570|ref|ZP_01053152.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] gi|85821433|gb|EAQ42580.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] Length = 450 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 144/372 (38%), Positives = 213/372 (57%), Gaps = 4/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ A+ D G+ PTPIQ + +V DV GIAQTGTGKT ++++P+L Sbjct: 1 MTFKELDLSNQLQYAIEDLGFENPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMMPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ ++ + PR L+L PTREL QV D EK K N V + GG Q + + Sbjct: 61 RDLK--FSKQKHPRVLVLVPTRELVVQVVDEIEKLSKYINTRVLGVYGGTNINTQKQAIL 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ TPGR+ D L + +I+ LVIDE D MLD+GF + NI ++P RQ Sbjct: 119 QGQDIIVATPGRLYDLGLSNALKLKSIQKLVIDEVDVMLDLGFRFQLMNIFDILPERRQN 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATMT+++ ++ +F +NP++I + + IE + K LL LL Sbjct: 179 VLFSATMTEDVDELIYDFFKNPEKISIAVSGTPLNNIEQI-SYNVPNFFTKVNLLNHLLS 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++T +IF K+ L LE+ G C IH N Q R++ + F EG +++ Sbjct: 238 DKETYNKVLIFVGFKRTADYLFKHLEEVFGSETCVIHSNKTQNYRIRSIRQFDEGNNRIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+ ARGLD +V HV NFD P+ ENY+HRIGRTGRA + GK L ++ + + Sbjct: 298 VATDVMARGLDFDNVSHVINFDTPDFPENYMHRIGRTGRAEKAGKTILLSTAKEQEAKEE 357 Query: 360 IEKLIEKKVDWL 371 IE L++ K+ L Sbjct: 358 IEALMDYKIPLL 369 >gi|331698451|ref|YP_004334690.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953140|gb|AEA26837.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 504 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 147/415 (35%), Positives = 225/415 (54%), Gaps = 16/415 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA+LGL P+ V LDA G+ P PIQ T+P+ L D+ G QTG+GKT +F L +L+ Sbjct: 64 FAELGL-PEAVLRTLDAEGFTAPFPIQAATLPVTLAGRDLLGRGQTGSGKTLAFGLALLS 122 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L GRA R PR L+L PTRELA QV D + + + L A ++GG+ F Q L R Sbjct: 123 RLAGGRAVARRPRGLVLVPTRELAQQVVDALDPFARALGLRAAAVVGGLSFNRQADALAR 182 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+L+ TPGR+ DH N+ ++ IE+ IDEADRM DMGF+P ++ I L P Q L Sbjct: 183 GVDLLVATPGRLTDHTNQRTADLSGIEVTAIDEADRMADMGFLPQVRAILDLTPADGQRL 242 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++ + +L +P V + + +T++H + K ++ ++ Sbjct: 243 LFSATLDGDVAALVSRYLHDPVTRAVASATGAVDTMDHHLL--LVDSVTKARVVAEI--- 297 Query: 242 QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++G I+F K V +L + G S +HG Q R + +++FKEG ++ Sbjct: 298 --AARDGRTILFARTKHGVDRWVRNLRRDGVSAAGLHGGKSQNQRNRAIADFKEGRTPVL 355 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+ + DV V + D P ++Y+HR GRT R G G TLV E+ + +D Sbjct: 356 VATDVAARGIHVDDVSLVVHIDPPGDPKDYLHRAGRTARGGESGTVVTLVTPEERRDVDT 415 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA---RKNNPIPQKSTGFDRRKK 411 + + + V D + + L+++ A+ + P PQ+ G RR + Sbjct: 416 LTR--QAGVRPTVHDAAPGSATLQRVTGAREPSGIAVVEPRPAPQQPRGQGRRSR 468 >gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] Length = 415 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 223/371 (60%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ +V+ A+ + + TPIQ K+IP++L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MKFSELQLNDQVLDALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G+ +I+ PTRELA Q+ E + ++ + GG I FE Q K Sbjct: 61 NNLSEGKHPEDSINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVTYFILDEADRMLDMGFYDDIMQIVKFLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ N L NP +++ + ++ +V Q K +++ Sbjct: 181 RQTIMFSATMPTKIQQLANNILNNPAEVKLAVSKPADKIVQAAYVCYENQ---KLGIIRN 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q T + IIF + K V + +L++ +V +H +++Q R ++ FK G I Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREDVMYEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T +++++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQTNF 356 Query: 358 DAIEKLIEKKV 368 IEK +EK + Sbjct: 357 KNIEKFLEKDI 367 >gi|114048321|ref|YP_738871.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113889763|gb|ABI43814.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 461 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 218/364 (59%), Gaps = 4/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY + T +Q + IPL L+ D+ AQTGTGKTASF LP+L Sbjct: 1 MKFDTLGLSSPILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K + + R L++ PTRELA QV N +KY + L + GG Q K +E Sbjct: 61 EQLSKQPSDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+ D + L ++ + LVIDEADRMLD+GF+ I+ + L+ QT Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSTVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT +D ++++S L P+ + V ++TA T+E + +K LL +L+ Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPEWVNV-AENATASTVEQ--LVYRVDKRRKAELLSELV- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F + K+ +L L G S HG+ Q +R ++L +FK G ++++V Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N ++P AE+Y+HRIGRTGRAG G+A + V+ D + + I Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356 Query: 361 EKLI 364 E LI Sbjct: 357 EALI 360 >gi|188587876|ref|YP_001920681.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str. Alaska E43] gi|188498157|gb|ACD51293.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str. Alaska E43] Length = 480 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 220/368 (59%), Gaps = 6/368 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LS +++ A+ + GY P+ +Q K IP +L+ D+ +QTG+GKTASF +P+ Sbjct: 4 EFNKFELSGELLKAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L+L PTRELA Q++++ G+ + + G Q +KL++ Sbjct: 64 KIDWDENK---PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR+LDH +RG L ++ I VIDEAD ML+MGFI ++ I +P R TL Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ DE++ + + + P I + + + T++ + H A + Y++K LL +L S Sbjct: 181 LFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSH--YAYHVGYNQKLDLLNNILIS 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++FC K+NV + L K+G+S IHG + Q+ R+ + F+ G +++VA Sbjct: 239 E-MPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RG+DI + HV N+D+P E Y+HRIGRTGRAG G A T ++++ IE Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIE 357 Query: 362 KLIEKKVD 369 + I K++ Sbjct: 358 EYIGFKLE 365 >gi|167384217|ref|XP_001736854.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760] gi|165900561|gb|EDR26857.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar SAW760] Length = 432 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 150/374 (40%), Positives = 224/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P+V+ V GY KPT IQ +IP+ LQ+ D+ GIAQTG+GKTASF+LPM+ Sbjct: 11 FKDLGLIPEVLKVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMIQH 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L + + R +I+EPTRELAAQV + ++ GK L LL+GG+ Q+ +L + Sbjct: 71 LLNVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSVQLAK 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 V++ TPGRI+ H K + +I+ LVIDEAD++L+M F I + +P R Sbjct: 131 RPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQR 190 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETI--EHCFVATYAQYSKKCALL 235 T+LFSATM+ +++K+ L +P +I E T +T+ E+CF+ + + L Sbjct: 191 TTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIP----FKYRDGYL 246 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L+ + K+ IIF + L L + G++ +HG + Q+ R+ L FK G Sbjct: 247 LSILKETEG-KSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGK 305 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++VA+D+A+RGLDIP+V V N+D P ++YIHR+GRT RAG+ G A TLV + I+ Sbjct: 306 RGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIE 365 Query: 356 HIDAIEKLIEKKVD 369 IE +IEKK++ Sbjct: 366 LYQRIETMIEKKLN 379 >gi|150016695|ref|YP_001308949.1| DEAD/DEAH box helicase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149903160|gb|ABR33993.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 480 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 216/371 (58%), Gaps = 6/371 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +S +++ ++ GY P+ +Q K IP +L D+ +QTG+GKTA+F +P+ Sbjct: 4 EFTKFKISDEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIPLC- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 EK +P+ L+L PTRELA QV+++ G+ + + G P Q +KL++ Sbjct: 63 --EKVDWNENIPQILVLTPTRELAVQVSEDITNIGRFKRIKSVSIFGKEPISEQERKLKQ 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGRILDH +RG L + I+ VIDEAD ML+MGFI ++ I +P + T+ Sbjct: 121 KTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTM 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ +E++ + + ++ P I +N E I+H Y Y +K L +L + Sbjct: 181 LFSATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLY--YTNYEEKIEKLNDILIT 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + +IF K+NV + L+ +G+SV IHG + Q+ R+ I+ F+ G +++V+ Sbjct: 239 EKP-ETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVS 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +DLA+RG+D+ + HV N+D+P E Y+HRIGRTGRAG GKA + E K + IE Sbjct: 298 TDLASRGIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIE 357 Query: 362 KLIEKKVDWLN 372 + I K+ N Sbjct: 358 EFIGFKIPVYN 368 >gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940] gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940] Length = 442 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 142/357 (39%), Positives = 217/357 (60%), Gaps = 7/357 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA LG++ ++V A+ G V+ IQ T+P+ L D+ G A+TG GKT F +P+L Sbjct: 14 FAALGVAAEIVDALASRGIVRTFAIQELTLPIALGGQDLIGQARTGMGKTLGFGVPVLDR 73 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + PR LI+ PTRELA QV ++ +N L +A + GG P+E Q K L Sbjct: 74 VFDDADIEELDGTPRALIVVPTRELAVQVGEDLTLASQNLPLRLATIYGGRPYEEQIKLL 133 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 E+G DV++ TPGR+LD +G L ++++ ILV+DEAD MLD+GF+P I+ I L+ + Sbjct: 134 EKGVDVIVGTPGRLLDLAQQGHLQLDHVAILVLDEADEMLDLGFLPDIEKILELLHGNKH 193 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQ 237 QT+LFSATM + ++ F+ P I + +T E T+ A K A++ + Sbjct: 194 QTMLFSATMPGPILTLARTFMNRPIHIRAESGDEN-QTHESTRKVTFQAHRMDKLAIISR 252 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LQ++ K IIF K++ + L ++GF V A+HG++ Q +R K L+ F+EG ++ Sbjct: 253 ALQAKGRGKT-IIFARTKRSAAEVADELARRGFRVGAVHGDLGQAAREKSLNAFREGKVE 311 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++VA+D+AARG+D+ DV HV N+ VP+ ++HRIGRTGRAG G A TLV +++ Sbjct: 312 ILVATDVAARGIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLVGYDEL 368 >gi|170718456|ref|YP_001783672.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 2336] gi|168826585|gb|ACA31956.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336] Length = 444 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 141/402 (35%), Positives = 225/402 (55%), Gaps = 14/402 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ GY +PT IQ+ IP +++ DV G A TGTGKTA+F+LP L Sbjct: 10 FEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPALQH 69 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L++A + GG+ ++ + + Sbjct: 70 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAYQNHGEVFNK 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + +EIL+ DEADRML MGF Y + I + + RQTL Sbjct: 130 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQYAEEIAAETRWRRQTL 189 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ E L + L++P + + I + + K LL + ++ Sbjct: 190 LFSATLEGELLMDFASRLLKDPVQFNAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 248 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + GI+F +++NV L L K+G + G + Q R K + K + ++V Sbjct: 249 NEQVSR-GIVFVRRRENVRELSEILRKRGIRSTYLEGEMAQTQRTKAIDKLKNDVVTVLV 307 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HR+GRT RAG+ G A + V D K + I Sbjct: 308 ATDVAARGIDIDDVSHVMNFDLPYNADTYLHRVGRTARAGKKGTAVSFVEAHDYKLLGKI 367 Query: 361 EK----LIEKKVDWLNGDLSSLNPP----LEKIDIAQHNHAR 394 ++ L++ ++ + G NPP ++ + Q N A+ Sbjct: 368 KRYTGELLKPRI--IEGLEPRTNPPKDGEIKTVSKKQKNRAK 407 >gi|160871634|ref|ZP_02061766.1| dead/deah box helicase [Rickettsiella grylli] gi|159120433|gb|EDP45771.1| dead/deah box helicase [Rickettsiella grylli] Length = 421 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 154/431 (35%), Positives = 233/431 (54%), Gaps = 26/431 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F + + +++ + GY TPIQIK IP +LQ DV G+AQTGTGKTA++ LP+L Sbjct: 1 MNFTEFNFNTQILSGIQTQGYRTATPIQIKAIPAILQGRDVVGLAQTGTGKTAAYALPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG-IPFEAQNKKL 119 L +G R LIL PTR+LA Q+ +G+ +L A + GG I + Q + L Sbjct: 61 QQLTEGPPG--QLRALILSPTRDLADQICVAMNHFGRQTHLRCATIYGGKINYTRQYQLL 118 Query: 120 ERGADVLICTPGRILDHFNRGKL-LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 G D+++ PGR+LD K + ++ LV+DEAD + D GF I +I +P R Sbjct: 119 TGGVDIIVACPGRLLDLLQGKKNNFLQQVKHLVLDEADHLFDHGFRDAIYHILKHLPPRR 178 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSATM+ +++ + + L P RI++ P + F + + K LL+ + Sbjct: 179 QNLLFSATMSADIRLLIDKVLHRPVRIQIGEPKPAVTITQTLFPVSE---TLKVNLLETI 235 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ ++ + IIF K L L G+ + GN+ Q R L F++G ++ Sbjct: 236 LQNH-SIHSAIIFTRTKHRAQCLAEHLRDLGYKATSFQGNLSQSRRKTALGKFRQGELKF 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV NFD+PN A Y HRIGRTGRA + G AF+L+ K D + I Sbjct: 295 LVATDVAARGIDIDHLSHVINFDMPNTAIEYTHRIGRTGRADKLGMAFSLITKNDRRKIQ 354 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 +IE L +K+ LE+ IA+ ++ K NP + + R+ +Y Sbjct: 355 SIEHLQKKR--------------LEECIIAEFDYHAKINPSMEPLNAYRRKPLSY----P 396 Query: 419 HIPLKESEKIS 429 H P +KI+ Sbjct: 397 HSPSTSRKKIA 407 >gi|1169228|sp|P46942|DB10_NICSY RecName: Full=ATP-dependent RNA helicase-like protein DB10 gi|563986|dbj|BAA03763.1| RNA helicase like protein DB10 [Nicotiana sylvestris] Length = 607 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 214/367 (58%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G ++V + AG+ PTPIQ ++ P+ LQ D+ IA+TG+GKT +++P Sbjct: 147 FEATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFIH 206 Query: 63 LEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L++ R ++ P L+L PTRELA Q+ K+GK+ ++ L GG P Q ++L R Sbjct: 207 LQQRRKNPQLGPTILVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLRELSR 266 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR+ D ++ + + LV+DEADRMLDMGF P I+ I VP RQTL Sbjct: 267 GVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVPVQRQTL 326 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQQL 238 +++AT ++K++ + L N ++ + + +H V + ++ ++Q+ Sbjct: 327 MYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRR---VEQI 383 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+S++ IIFC+ KK L +L + F AIHG+ Q R +LS F+ G + Sbjct: 384 LRSKEPGSKIIIFCSTKKMCDQLSRNLTRN-FGAAAIHGDKSQGERDYVLSQFRAGRSPV 442 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N+D P E+Y+HRIGRTGRAG G A+T + +D KH Sbjct: 443 LVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHAL 502 Query: 359 AIEKLIE 365 + K++E Sbjct: 503 DLVKVLE 509 >gi|194017071|ref|ZP_03055683.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061] gi|194010939|gb|EDW20509.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061] Length = 480 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 203/339 (59%), Gaps = 6/339 (1%) Query: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83 PTP+Q +T+ + R D+ +QTG+GKTA++ LP+ +++ + P+ LIL PTRE Sbjct: 27 PTPVQHETLSVAFSRQDLIVKSQTGSGKTAAYGLPICEMVDWAENK---PQALILVPTRE 83 Query: 84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143 LA QV + G+ + A + G PF+AQ +L + ++ TPGR+LDH +G L Sbjct: 84 LAMQVKQDLTSLGRLKRIKAAAIYGKAPFQAQKVELAQKNHIVCGTPGRVLDHLEKGTLS 143 Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203 + N++ V+DEAD ML+MGFI + +I +P R ++LFSATM+DE++K+SE FLQ+PK Sbjct: 144 LENLKFFVLDEADEMLNMGFIEQVSSIIEYLPPKRMSMLFSATMSDEMKKLSEQFLQSPK 203 Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263 IE+ ++ I H + T + K +LLQ+ + ++ + IIFCN + V L Sbjct: 204 VIEIAREETSVPQITHTVIET--EEEAKFSLLQRTIVIENP-DSCIIFCNTQDRVNELTM 260 Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323 L+ IHG + Q R ++ FK G + ++A+D+AARG+D+ D+ HV ++D+P Sbjct: 261 KLDDWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGIDVSDMTHVIHYDLP 320 Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 E YIHR GRTGRAG+ GK + K ID +++ Sbjct: 321 YEKERYIHRTGRTGRAGKSGKTIAFMTKNAKPLIDELKQ 359 >gi|149376365|ref|ZP_01894128.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893] gi|149359379|gb|EDM47840.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893] Length = 428 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 151/411 (36%), Positives = 233/411 (56%), Gaps = 14/411 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F DL L +V+ A+ D G+ TPIQ +T+P L D+ G AQTGTGKTA+F++ + Sbjct: 13 FKDLNLDQRVLDAITDIGFEHCTPIQAETLPFTLACQDLIGQAQTGTGKTAAFLITAIQS 72 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T + K PR L L PTRELA Q+A + E+ V ++GG+ ++ Q Sbjct: 73 MLETPIPKEDRFASEPRVLALAPTRELAMQIAKDAEQLCGYTGHNVVTVVGGMNYDKQRD 132 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVP 175 +L+ D+L+ TPGR++D + ++ ++IL++DEADRMLDMGFIP ++ I P Sbjct: 133 QLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTP 192 Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTLLFSAT ++ ++ + ++ + +E+ TAE ++ +K + Sbjct: 193 KEERQTLLFSATFNQDVLNLASMWTKSAEFVEIEPEQKTAERVKQTVY--LVGEDEKLPV 250 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L LQ + K I+F N++ +L L QG V + G I Q R+K L FK G Sbjct: 251 LVNYLQRPEVEK-AIVFANRRDQCRDLDEDLRNQGVKVALMSGEIAQNKRLKTLEQFKNG 309 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +IQ++VA+D+A RG+ + V HVFN+++P+ AE+Y+HRIGRTGRAG+HG + + +++D Sbjct: 310 SIQVLVATDVAGRGIHVDGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSVSFASEDDA 369 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 + AIE I +K+ D +L LEK I + R+ P +S G Sbjct: 370 FSLPAIESYISQKLTTAVPD-EALMTELEKPPITRKRGGRR--PQGNRSQG 417 >gi|330962153|gb|EGH62413.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 484 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L+P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 97 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 156 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K +L V +GG+ F+ Q K+ Sbjct: 157 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTDLNVMTFVGGMDFDKQLKQ 216 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 217 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 276 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 277 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 334 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 335 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 453 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 454 QLPAIEEKLGRKI 466 >gi|262377334|ref|ZP_06070558.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145] gi|262307787|gb|EEY88926.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145] Length = 624 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 222/377 (58%), Gaps = 13/377 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD L + A+ G+ PTP+Q + IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FADFSLDESLTQALDALGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64 Query: 63 LE--------KGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112 L K R + V P L++ PTRELA QV + + ++ + +A ++GG+PF Sbjct: 65 LANQDTLVPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRIAAIMGGMPF 124 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q ++L +GA V++ TPGR+LD NR ++ ++ ++ L++DEADRMLD+GF ++ I Sbjct: 125 GKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAIGE 183 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L +QTL+FSAT + ++E + +P RI + T ST I T + K Sbjct: 184 LAANRKQTLMFSATFAPRIITLAERMMNDPMRISIETGHSTNTDITQTLHWTDG-FEHKK 242 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL L +D + ++F + +++ L L + G SV A+HG + Q R + L + + Sbjct: 243 KLLTHWLNEED-VDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIR 301 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYR 361 Query: 353 DIKHIDAIEKLIEKKVD 369 + I A+E ++ +++ Sbjct: 362 ERGKIRALEDFLDARLN 378 >gi|157960228|ref|YP_001500262.1| ATP-dependent RNA helicase RhlB [Shewanella pealeana ATCC 700345] gi|189040044|sp|A8GZJ0|RHLB_SHEPA RecName: Full=ATP-dependent RNA helicase rhlB gi|157845228|gb|ABV85727.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 436 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 146/402 (36%), Positives = 240/402 (59%), Gaps = 14/402 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L +V A+ +AG+ TPIQ ++P++L++ D+ G AQTGTGKT +F++ Sbjct: 11 FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ ++ PR +I+ PTRELA Q+A + K+ L V ++ GG +E Q K Sbjct: 71 LLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEVQRKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L++G D+LI T GRI+D+ +G + ++ I+ +V+DEADRM D+GFI I+ + +P Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 +R +LFSAT++ ++Q+++ + + P+++E+ T++ I E F Y +K LL Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIF---YPSMEEKMPLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL+ +D + I+F N K + + LE G + G++ Q+ R++IL F +G Sbjct: 248 LSLLE-EDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG+ G + + +E Sbjct: 307 IDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYAL 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHAR 394 ++ AIE I+ + + D +L PP +I H R Sbjct: 367 NLPAIESYIQHSIPVTSYDSDALLDDIPPPVRIHRKPSTHTR 408 >gi|332662165|ref|YP_004444953.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332330979|gb|AEE48080.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 451 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 144/385 (37%), Positives = 220/385 (57%), Gaps = 17/385 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F + GL P ++ V Y TPIQ K IP++L+ D+ GIAQTGTGKTA+F+LP+L Sbjct: 1 MNFTEFGLHPDLLDGVDAMNYKTATPIQEKAIPIILEGKDLIGIAQTGTGKTAAFILPVL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQN 116 I+E G A +TL++ PTRELA Q+ E Y ++ + GG F + Sbjct: 61 NEIIESGEAN--FIQTLVIVPTRELAVQIDQVIEAYSYFTGVSSIAIYGGGDGKEFAQEK 118 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D++I TPGR++ H N G + + + LV+DEADRM+DMGF P + I +P Sbjct: 119 NALVSGVDIVIATPGRLISHLNMGYVNFSKLRFLVLDEADRMMDMGFQPDLMRIIGKIPQ 178 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSATM + + K++ N + + + S AE + Y + +K L+ Sbjct: 179 KRQTLLFSATMPESVMKLARQLTHNAESVSIAL-SKPAEGVTQRAYVVYEE--QKLQLVT 235 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +LL+ + + ++FC+ K +V +L L ++ SV + +++Q R + + F+ I Sbjct: 236 ELLKDRKGQRI-VVFCSSKASVSSLYSKLHRKNLSVGQMSSDVEQDQREETMLAFRNSKI 294 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ +RG+D+ + V N+DVP E+Y+HR+GRT RA R G+A TLV+ D Sbjct: 295 DIIVATDVISRGIDVDGIDLVVNYDVPRDPEDYVHRVGRTARAERKGEAITLVSPGDQLR 354 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPP 381 IEKLI+K D+ L PP Sbjct: 355 FRRIEKLIDK-------DIEKLGPP 372 >gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans] Length = 652 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 153/408 (37%), Positives = 229/408 (56%), Gaps = 24/408 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 +F + G V+ + G+ KPT IQ + P+ L D+ G+AQTG+GKT ++VLP + Sbjct: 118 FEFNEGGFPDYVMTGIKKLGFAKPTAIQAQGWPIALSGRDMVGVAQTGSGKTLAYVLPAV 177 Query: 61 TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + R+ P LIL PTRELA Q+ ++G + + GG P + Q++ Sbjct: 178 VHINN-QPRLEHSDGPIALILAPTRELAQQIQQVANEFGSQIQVRNTCIFGGAPKQPQSR 236 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 237 DLERGVEIVIATPGRLIDFLERGVTNLRRCTYLVLDEADRMLDMGFEPQIRKIIKQIRPD 296 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVN--TPSSTAETIEHCFVATYAQYSKKC-AL 234 RQ L++SAT E++ ++E FL N +I + T S+ ++ V A+ + K L Sbjct: 297 RQVLMWSATWPKEVRNLAEEFLDNYIQINIGSLTLSANHNILQIVDVCEEAEKTNKLNKL 356 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++ +DT IIF KK V + S+ +QG+ CAIHG+ Q+ R +L++F+ G Sbjct: 357 LGEISSEKDTKT--IIFVETKKRVDEITRSISRQGWRACAIHGDKSQQERDYVLTSFRNG 414 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL + Sbjct: 415 RSSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTTANA 474 Query: 355 -KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH----NHARKNN 397 K D I+ L E K +NP L +D+A H N R NN Sbjct: 475 NKANDLIQVLREAK--------QVINPRL--VDMASHSKRGNGGRSNN 512 >gi|167625797|ref|YP_001676091.1| ATP-dependent RNA helicase RhlB [Shewanella halifaxensis HAW-EB4] gi|189040042|sp|B0TJ29|RHLB_SHEHH RecName: Full=ATP-dependent RNA helicase rhlB gi|167355819|gb|ABZ78432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 436 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 146/402 (36%), Positives = 240/402 (59%), Gaps = 14/402 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L +V A+ +AG+ TPIQ ++P++L++ D+ G AQTGTGKT +F++ Sbjct: 11 FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ ++ PR +I+ PTRELA Q+A + K+ L V ++ GG +E Q K Sbjct: 71 LLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEVQRKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L++G D+LI T GRI+D+ +G + ++ I+ +V+DEADRM D+GFI I+ + +P Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 +R +LFSAT++ ++Q+++ + + P+++E+ T++ I E F Y +K LL Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIF---YPSMEEKMPLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL+ +D + I+F N K + + LE G + G++ Q+ R++IL F +G Sbjct: 248 LSLLE-EDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGE 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG+ G + + +E Sbjct: 307 IDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISVSFACEEYAL 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL---NPPLEKIDIAQHNHAR 394 ++ AIE I+ + + D +L PP +I H R Sbjct: 367 NLPAIESYIQHSIPVTSYDSDALLDDIPPPVRIHRKPSTHTR 408 >gi|255961279|ref|YP_346703.3| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf0-1] gi|77381201|gb|ABA72714.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1] Length = 492 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 221/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ D G+ TPIQ + + L D G AQTGTGKTA+F++ ++T Sbjct: 104 FHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQ 163 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 164 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 223 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG + ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 224 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 283 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT TD++ +++ + +P +E+ + E +E A + K LL Sbjct: 284 SERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEVTNVANENVEQHIYAVAG--ADKYKLL 341 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + I+F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 342 FNLV-NDNGWERVIVFANRKDEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGK 400 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 401 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 460 Query: 356 HIDAIEKLIEKKV 368 + +IE+ + +K+ Sbjct: 461 QLPSIEEKLGRKI 473 >gi|28899776|ref|NP_799381.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD 2210633] gi|153839108|ref|ZP_01991775.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810] gi|260362509|ref|ZP_05775435.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030] gi|260877189|ref|ZP_05889544.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034] gi|260897233|ref|ZP_05905729.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466] gi|260901365|ref|ZP_05909760.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037] gi|32363280|sp|Q87KH5|RHLB_VIBPA RecName: Full=ATP-dependent RNA helicase rhlB gi|28808028|dbj|BAC61265.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD 2210633] gi|149747404|gb|EDM58368.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810] gi|308088928|gb|EFO38623.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466] gi|308094139|gb|EFO43834.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034] gi|308107202|gb|EFO44742.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037] gi|308112656|gb|EFO50196.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030] gi|328471326|gb|EGF42225.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 10329] Length = 437 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 220/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P+V + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLQPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E + L AL GG ++ Q K Sbjct: 71 LLTTPEHEGRQPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+LI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPAQKTGHRIQEELF--YPSNEDKMALLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ I+F N K ++ L G V + G++ Q+ R KIL F +G + Sbjct: 249 TLIE-EEWPDRAIVFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E + Sbjct: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + AIE+ IE + D S+L Sbjct: 368 LPAIEEYIEHTIPVSEYDASAL 389 >gi|167375363|ref|XP_001733609.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760] gi|165905196|gb|EDR30262.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar SAW760] Length = 432 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 150/374 (40%), Positives = 224/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P+V+ V GY KPT IQ +IP+ LQ+ D+ GIAQTG+GKTASF+LPM+ Sbjct: 11 FKDLGLIPEVLKVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMIQH 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L + + R +I+EPTRELAAQV + ++ GK L LL+GG+ Q+ +L + Sbjct: 71 LLNVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSIQLAK 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIE---ILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 V++ TPGRI+ H K + +I+ LVIDEAD++L+M F I + +P R Sbjct: 131 RPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQR 190 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETI--EHCFVATYAQYSKKCALL 235 T+LFSATM+ +++K+ L +P +I E T +T+ E+CF+ + + L Sbjct: 191 TTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIP----FKYRDGYL 246 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L+ + K+ IIF + L L + G++ +HG + Q+ R+ L FK G Sbjct: 247 LSILKETEG-KSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGK 305 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++VA+D+A+RGLDIP+V V N+D P ++YIHR+GRT RAG+ G A TLV + I+ Sbjct: 306 RGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIE 365 Query: 356 HIDAIEKLIEKKVD 369 IE +IEKK++ Sbjct: 366 LYQRIETMIEKKLN 379 >gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays] gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays] Length = 768 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 143/357 (40%), Positives = 215/357 (60%), Gaps = 4/357 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D G ++ A+ Y KPT IQ + +P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 220 NFEDCGFPVPLMNAIAKQAYQKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 279 Query: 62 -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I+++ + P +I PTRELA Q+ +K+ K YNL VA + GG+ Q K+L Sbjct: 280 HIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKEL 339 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G +V+I TPGR++D L M LV+DEADRM D+GF P I++I + RQ Sbjct: 340 KAGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPGRQ 399 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++++++ L +P R+ V E I+ + K LL++L Sbjct: 400 TLLFSATMPYKVERLAREILTDPIRVTVGQVGGANEDIKQVVNVIPSDAEKMPWLLEKLP 459 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + ++F ++K V + L ++GF + A+HG+ DQ SRM+ L FK GT ++ Sbjct: 460 GMIDD-GDVLVFASKKARVDEIERELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVL 518 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 VA+D+AARGLDI + V NFD+ + +IHRIGRTGRAG + G A+TL+ +++ + Sbjct: 519 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEAR 575 >gi|114561845|ref|YP_749358.1| ATP-dependent RNA helicase SrmB [Shewanella frigidimarina NCIMB 400] gi|114333138|gb|ABI70520.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 406 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 215/367 (58%), Gaps = 4/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L P ++ ++ G+ PT IQ +TIPL + + D+ A TGTGKTASF+LP L Sbjct: 1 MQFEDFQLDPSLLESLKAMGHNTPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPAL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R L+L PTRELA+Q+ L +A++ GG+P+ Q + L Sbjct: 61 QHLIDFPRRFEGQARILVLTPTRELASQIHRYASHLATGLELNIAIITGGVPYGPQEEAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++++ ++ K +EIL+IDEADRMLDMGF +Q+I +Q Sbjct: 121 ADNVDLLIATPGRLMEYLDKDKFDATEVEILIIDEADRMLDMGFSSVVQSIAIEAQGRKQ 180 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ + + + + + L +P ++V P S + H +V + K ALL + Sbjct: 181 NMLFSATLEGNGVNRFARDLLTDPVMVDVEAPRSEKAKV-HQWVHLADDQAHKFALLCHI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ Q+ + I+F ++ V +L L K + G+++Q+ R + L F +G + + Sbjct: 240 LQ-QENVTRTIVFVKTREMVASLEGLLLKANIPCAFMRGDMEQKKRFQALGRFSKGEVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ D+ HV NFD+P A+ Y+HRIGRT RAG G A +LV D++ + Sbjct: 299 LLATDVAARGIDVDDITHVINFDMPRSADAYVHRIGRTARAGAKGTAISLVEAHDMRIVS 358 Query: 359 AIEKLIE 365 IE+ IE Sbjct: 359 KIERYIE 365 >gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC 51867] Length = 455 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 211/357 (59%), Gaps = 8/357 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LG++ ++ A+ V IQ T+P+ L+ D+ G A+TG GKT F +P+L Sbjct: 10 FTELGVAQEITDALAAQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDR 69 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I + PR LI+ PTREL QV ++ + N + V + GG P+E Q K L Sbjct: 70 IFDDADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKAL 129 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G D+++ TPGR++D +NRG+L + + ILV+DEAD MLD+GF+P I+ I + + Q Sbjct: 130 KDGTDLVVGTPGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIEKIIAGITAEHQ 189 Query: 180 TLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 T+LFSATM D + ++ F+ P R E++ + T T + ++ K A++ + Sbjct: 190 TMLFSATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRM--DKVAVISR 247 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +LQ++ + IIF K++ + L GF V ++HG++ Q +R + L F++G + Sbjct: 248 VLQARGRGRT-IIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVD 306 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++VA+D+AARG+DI DV HV N+ P+ Y+HRIGRTGRAG G A TLV +++ Sbjct: 307 ILVATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDEL 363 >gi|157961286|ref|YP_001501320.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846286|gb|ABV86785.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 442 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 219/371 (59%), Gaps = 14/371 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL P+++ + Y KPT IQ IP VL DV G A+TG+GKTA+F LP++ Sbjct: 24 DFTQLGLIPELLETLKLLSYTKPTAIQSHIIPAVLDGKDVLGGAKTGSGKTAAFALPIIQ 83 Query: 62 ILEKGRARV---RMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116 L K R L+L PTRELA QVAD+F +Y + NL + GG+ Q Sbjct: 84 KLAKASPRKAGGNFVSCLVLVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNVQM 143 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L GAD+++ TPGR++D + L ++N LV+DEADRML +GF + + + +P Sbjct: 144 QSLRGGADIVVATPGRLIDLISSNALKLDNTTTLVLDEADRMLSLGFTEELNELLAKLPK 203 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 T+QTLLFSAT +E+++++++ L NP +EV SS T+ + ++K ALL Sbjct: 204 TKQTLLFSATFPEEVRELTDSLLNNP--VEVQLQSSEESTLVQRVITV--NRNRKTALLA 259 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 QL++ + + +IF + K + L LE G + H + Q +R ++L FK G I Sbjct: 260 QLIKD-NQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEI 318 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++A+D+AARG+DI + V NF++P +Y+HRIGR+GRAG G A +L++ ++ +H Sbjct: 319 SVLIATDIAARGIDIEKLPIVINFELPRSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQH 378 Query: 357 IDAIEKLIEKK 367 KLIEKK Sbjct: 379 F----KLIEKK 385 >gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 390 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 141/352 (40%), Positives = 202/352 (57%), Gaps = 9/352 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F LGL P++V V AGY P+PIQ IP + DV +A+TGTGKTA+F LP++ Sbjct: 16 FDTLGLDPRIVANVARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIHR 75 Query: 61 TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + G A P R LIL PTRELA+Q A + LTVAL IGG P + Q Sbjct: 76 LLTGAGGAAPSGPPGAVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQA 135 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L G D+L+ TPGR+LDH + +++ LV+DEADRMLD+GF+ ++ I + +P Sbjct: 136 RALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLPV 195 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 QTLLFSATM+ + + L P +I ++ I + T A ++K A L Sbjct: 196 RHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPA--ARKAASLL 253 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ + + ++F K+ L +L G + A+HG+ Q R + L +F+ G + Sbjct: 254 AVLRREAGGRT-MVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRL 312 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 ++VA+D+ ARG+D+ DV V NFD+P + E YIHRIGRT RAGR G A +L Sbjct: 313 LVLVATDVMARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSL 364 >gi|325527064|gb|EGD04490.1| ATP-dependent RNA helicase [Burkholderia sp. TJI49] Length = 391 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 134/292 (45%), Positives = 191/292 (65%), Gaps = 3/292 (1%) Query: 78 LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137 L PTRELA QVA N Y K+ +L A++ GG+ Q +L RG ++LI TPGR+LDH Sbjct: 1 LTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHV 60 Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 + + ++ILV+DEADRMLDMGF+P +Q I +L+P RQTLLFSAT + E++K++ Sbjct: 61 QQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLAST 120 Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257 +L+NP+ IEV +ST + V A+ K+ A++ QLL+ + +K I+FCN K Sbjct: 121 YLRNPQTIEVARSNSTNANVTQ-IVYDVAEGDKQAAVV-QLLRDRG-LKQVIVFCNSKIG 177 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 L +LE+ G AIHG+ Q RM+ L FK G I+ +VA+D+AARGLDI ++ V Sbjct: 178 ASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIEALVATDVAARGLDIAELPAV 237 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 NFD+P AE+Y+HRIGRTGRAG G A +L + + K + IEKLI++ ++ Sbjct: 238 INFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLE 289 >gi|294776591|ref|ZP_06742061.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510] gi|294449579|gb|EFG18109.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510] Length = 425 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 149/423 (35%), Positives = 243/423 (57%), Gaps = 19/423 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L V+ A+ + + TP+Q TIP++L+ D+ G+AQTGTGKTA+++LP+L Sbjct: 1 MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115 L KG +I+ PTRELA Q+ E G +Y L +VA+ G G+ FE + Sbjct: 61 NQLSKGGYPEDAINCVIMSPTRELAQQIDQQME--GFSYFLPASSVAVYGGNDGVRFEQE 118 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 119 KKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT++FSATM ++Q++++ L NP I++ + I+ ++ Q K ++ Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQ---KLGII 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L Q Q T + IIF + K V + + ++ +V +H +++Q R +I+ FK G Sbjct: 236 QSLFQDQ-TPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGR 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I +++A+D+ +RG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V++++ Sbjct: 295 INILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQP 354 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 AIE ++L ++ + P E + ++N K +G R++ NY Sbjct: 355 QFKAIE-------NFLGRNIYKIPVPEELGEAPEYNPRSGAGRSNHKGSG-SRKQGNYKG 406 Query: 416 QKS 418 +K+ Sbjct: 407 KKN 409 >gi|123966425|ref|YP_001011506.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9515] gi|123200791|gb|ABM72399.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9515] Length = 595 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 147/403 (36%), Positives = 225/403 (55%), Gaps = 16/403 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G + ++ ++ + GY PTPIQ IP ++ D+ G AQTGTGKTA+F LP++ Sbjct: 53 FACFGFNKLILNSLENKGYKIPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPIIEK 112 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 LE + + L++ PTRELA QVAD+F+ Y ++ NL + GG F Q L+R Sbjct: 113 LENNKES--NAKVLVMTPTRELATQVADSFKSYSVESTNLRTLAIYGGTDFRNQISSLKR 170 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV++ TPGRI+DH +G +NNI LV+DEAD ML MGF+ I+ I +P +Q + Sbjct: 171 KTDVVVGTPGRIMDHIRQGTFKINNINCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMV 230 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +E++ +++ +L +P I + + + I ++ Q K L+++L+ Sbjct: 231 LFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLITQRYIN--VQRHHKLEALKRILEI 288 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T + IIF K ++ +LE G SV ++G+I Q R + K+G I ++VA Sbjct: 289 --TNEGVIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 346 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D P E Y HRIGRTGRAGR G+A V + + + +E Sbjct: 347 TDVAARGLDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLE 406 Query: 362 KLIEKKVDWL---------NGDLSSLNPPLEKIDIAQHNHARK 395 K++ + + L L +I +AQ N+ K Sbjct: 407 NSTRNKIEEIEIPNNKLINEKRMGKLISNLNEISLAQENNEEK 449 >gi|95930488|ref|ZP_01313224.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] gi|95133528|gb|EAT15191.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] Length = 433 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 216/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L V V+ G+ + TP+Q + IPL L D+ AQTGTGKTA+F++ + Sbjct: 1 MRFDTLNLPELVQQGVVQLGFSELTPVQEQAIPLALNGRDIAAQAQTGTGKTAAFLIALY 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 T +L + PR LI+ PTREL Q+ ++ + + LT+ + GG+ ++ Q + Sbjct: 61 TRLLNNPQPTSENPRALIMAPTRELVVQICEDAKGLVPDSPLTIHPVYGGVDYDRQRQAF 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177 +G D+++ TPGR++D+ + IE+LVIDEADRM DMGFI ++ I +P Sbjct: 121 GKGVDIVVATPGRLIDYAKQKVFSFKRIEVLVIDEADRMFDMGFISDLRFILRRLPSYDK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSAT++ + +++ +F+ +++++ TAE +E A+ +K LL Sbjct: 181 RQTMLFSATLSPRVMELAYDFMNEAEKVQIEPEQVTAERVEQIVYHVGAK--EKIPLLLG 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + ++F N K++ + L+ I G+I Q RM+ILS FKEG +Q Sbjct: 239 LLNGRMADGRVMVFANTKRDTDYVTRVLQANDVKAAQISGDISQVKRMRILSEFKEGKVQ 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+A+RG+ I DV HV N+DVP E+Y+HRIGRT RAG G A + ++ + H+ Sbjct: 299 VLVATDVASRGIHIEDVTHVVNYDVPQDPEDYVHRIGRTARAGASGLAIMMADEDLVYHL 358 Query: 358 DAIEKLIEKKV 368 AIE+ I + Sbjct: 359 PAIEEYISSSI 369 >gi|91227047|ref|ZP_01261584.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] gi|91188849|gb|EAS75135.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] Length = 416 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 219/370 (59%), Gaps = 19/370 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL P +V + Y +PTPIQ ++IP +L+ D+ G A TG+GKTA+F LP+L Sbjct: 10 FADLGLIPTLVERLEALEYSQPTPIQSRSIPDILEGKDIIGGANTGSGKTAAFSLPILQK 69 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113 + E R LIL PTRELA+QVA N + Y +Y+L TVA+ GG+ Sbjct: 70 IVQQDESNNRRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVN 126 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L G D+++ TPGR+LD + + ++ ++ LV+DEADRML +GF + I +L Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT D++ +++ L++P +EV S+ A T ++ F + K Sbjct: 187 LPEKKQTLLFSATFPDKVTTLAQQLLRDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 A+L L++ Q + +IF N K +L L K+G + HG+ Q +R ++L FK Sbjct: 242 AVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G IQ+++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G +L+ + Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 361 DYHHFKVIEK 370 >gi|224135589|ref|XP_002322111.1| predicted protein [Populus trichocarpa] gi|222869107|gb|EEF06238.1| predicted protein [Populus trichocarpa] Length = 710 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 206/369 (55%), Gaps = 25/369 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +A+ LS +++ AV Y KP+PIQ+ IPL LQ+ DV GIA+TG+GKT +FVLPMLT Sbjct: 292 WAESKLSSELLKAVERVVYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTCAFVLPMLTY 351 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ D K+ + V ++GG E Q Sbjct: 352 ISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGF 411 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 ++ +G +V+I TPGR++D R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 412 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSS 471 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T + I Sbjct: 472 NLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQH 531 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + T + S+K + L +LL K I+F N KKN + +L+K G+ V +HG Sbjct: 532 VIMT--KESEKSSRLHRLLDELGD-KTAIVFVNTKKNADMVAKNLDKHGYRVTTLHGGKS 588 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+A RG+DIPDV HV N+D+P E Y HRIGRTGRAG Sbjct: 589 QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 648 Query: 341 RHGKAFTLV 349 + G A T + Sbjct: 649 KTGVASTFL 657 >gi|121727419|ref|ZP_01680547.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52] gi|147673597|ref|YP_001218057.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395] gi|262167586|ref|ZP_06035291.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27] gi|262190509|ref|ZP_06048754.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93] gi|121630191|gb|EAX62591.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52] gi|146315480|gb|ABQ20019.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395] gi|227014452|gb|ACP10662.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395] gi|262024039|gb|EEY42735.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27] gi|262033605|gb|EEY52098.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93] Length = 460 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 225/368 (61%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L+ DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ +N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPTSIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDIAIE 367 >gi|50084496|ref|YP_046006.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. ADP1] gi|49530472|emb|CAG68184.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ADP1] Length = 383 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 222/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FGTLNLHPQLKQAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R + R LIL PTRELA Q+ + + + +L V L+GG+ F+ Q K Sbjct: 65 LLNNPIQEQRYRGEV-RALILAPTRELALQIESDARELTRFTDLNVLTLVGGVDFDKQKK 123 Query: 118 KL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L E+ D+L+ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 PLNEKFIDILVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPR 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ ++ +L P +E+ T +E Q K L Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYMVAKQ--DKYRL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ + + +IF N++ V L L+K G+ V + G I Q R+K+L FK+G Sbjct: 242 LQDILRDE-PIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 301 KNNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTQGVSISFLSEDDA 360 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 361 FYLPEIEKAIGKKL 374 >gi|332520832|ref|ZP_08397292.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043362|gb|EGI79558.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 622 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 221/369 (59%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F +LGL+ ++ + D G+ P+ +Q K IP++LQ D+ +AQTGTGKTA+F PML Sbjct: 4 FQELGLNEDLLKGITDLGFETPSEVQEKAIPILLQDEGDLVALAQTGTGKTAAFGFPMLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120 ++ R + LIL PTREL Q+A+ + YGK L V + GG Q ++++ Sbjct: 64 KID---VNSRTTQGLILSPTRELCLQIANEMKAYGKYCKGLNVVAIYGGSSITDQAREVK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D +R + + I+ V+DEAD ML+MGF I +I S P + T Sbjct: 121 RGAQIIVATPGRMKDMISRKLVDITKIQYSVLDEADEMLNMGFKEDITDILSGTPKDKST 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++++F+ P+ I V + + + H + A+ + L++L Sbjct: 181 WLFSATMPKEVARIAKDFMHEPQEITVGHKNESTSNVSHEYYLVNAR--DRYQALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + +IFC K++ + L + G+S A+HG++ Q R ++ F+ IQ++V Sbjct: 239 ANPDIFS-VIFCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDIVMKQFRTRQIQMLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HV N+ + + E Y HR GRTGRAG+ G + +V+K +++ + +I Sbjct: 298 ATDVAARGIDVDDVTHVINYQLSDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRRLRSI 357 Query: 361 EKLIEKKVD 369 E++I KK + Sbjct: 358 ERIINKKFE 366 >gi|6137207|gb|AAF04377.1|AF188678_1 P72 DEAD box protein [Pisum sativum] Length = 716 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 211/374 (56%), Gaps = 18/374 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM- 59 M FA G ++ V +AG+ PTPIQ ++ P+ LQ D+ IA+TG+GKT ++LP Sbjct: 152 MSFASSGFPSEIHKEVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAF 211 Query: 60 -----LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L I K P L+L ELA Q+ D K+ K + L GG P Sbjct: 212 ITSSALIITPK-----WGPTILVLHQQGELATQIQDEAVKFSKTSRIACTCLYGGAPKGP 266 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + ++RGAD+++ TPGR+ D ++ ++ + LV+DEADRMLDMGF P I+ I + V Sbjct: 267 QLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGV 326 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKK 231 P RQTL+F+AT E++K++ + L NP ++ + + +H V + + ++ Sbjct: 327 PARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRR 386 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L+ +LQSQD IIFC+ KK L +L +Q F AI G+ Q R +L+ F Sbjct: 387 ---LESILQSQDQGSKIIIFCSTKKMCDQLARNLTRQ-FGAAAIRGDKSQADRDHVLNQF 442 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G ++VA+D+AARGLD+ D+ V N+ P E+Y+HRIGRTGRAG G A+T Sbjct: 443 RSGRTPVLVATDVAARGLDVKDIRVVVNYTFPTGVEDYLHRIGRTGRAGATGIAYTFFGD 502 Query: 352 EDIKHIDAIEKLIE 365 +D KH + K++E Sbjct: 503 QDAKHASDLIKILE 516 >gi|264680431|ref|YP_003280341.1| hypothetical protein CtCNB1_4299 [Comamonas testosteroni CNB-2] gi|262210947|gb|ACY35045.1| hypothetical conserved protein [Comamonas testosteroni CNB-2] Length = 469 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/390 (38%), Positives = 219/390 (56%), Gaps = 16/390 (4%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 L LSP+++ + GY + TPIQ ++PL LQ D+ A TG+GKTA+F LPM+ L Sbjct: 19 LPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDRLNP 78 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGAD 124 R + L+L PTRELA QVA + + N+ V + GG+P Q LE GA Sbjct: 79 ---RWFAVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLENGAH 135 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 +++ TPGR++D RGKL + N++ LV+DEADRMLDMGF+ I+ + P RQTLLFS Sbjct: 136 IVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTLLFS 195 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLLQSQD 243 AT D + ++ F+++P+ ++V T S + + + V T + S LL Sbjct: 196 ATYPDGIASLASRFMRDPQTVKVATQHSAGKIAQRWYEVGTREKVSTVAKLLAHFRP--- 252 Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 ++ I FCN K+ ++ L+ QGFS A+ G ++QR R ++L F + ++VA+D Sbjct: 253 --ESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVATD 310 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 +AARGLDI D+ V N DV E +IHRIGRTGR G A LV+ +++ + IE+L Sbjct: 311 VAARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIEQL 370 Query: 364 IEKKVDWLNGDL------SSLNPPLEKIDI 387 + + D L PP+ I I Sbjct: 371 QGRASQFFPVDELTPAAGGELLPPMMTIQI 400 >gi|319651055|ref|ZP_08005189.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] gi|317397225|gb|EFV77929.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] Length = 481 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 218/362 (60%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD +S ++ A+ Y PT +Q + IPL ++ D+ AQTG+GKTASF +P+ + Sbjct: 6 FADFHVSEEIKRALAVLKYETPTEVQSEVIPLAMKNQDLVVKAQTGSGKTASFGIPVSDM 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E + P+ +IL PTRELA QV ++ G+ + + G PF Q +L++ Sbjct: 66 VEWEEKK---PQAIILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGR++DH R L+++ I+ L+IDEAD ML+ GFI ++ I +P R T++ Sbjct: 123 THVVVGTPGRVMDHIERETLILDQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMV 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++ + ++++P +I++ + TA+TIEH + + +K +LL+ + + Sbjct: 183 FSATLPKDVENLCHKYMKDPIQIKIESTKVTADTIEHSLIEVREE--EKISLLKDVTVVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + +IFC K++V + L+K G+ +HG ++Q R ++ FK G + +VA+ Sbjct: 241 NP-DSCLIFCRTKEHVDTVYSELDKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI +V V N+DVP E+Y+HR GRTGRAG GKA T + K I AIE+ Sbjct: 300 DVAARGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFSTPFEGKFIKAIER 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|300024067|ref|YP_003756678.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888] gi|299525888|gb|ADJ24357.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 635 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 224/373 (60%), Gaps = 7/373 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F G + + A+ GYV PTPIQ++ +P L+ D+ G+A+TG+GKTA+FVLP+L Sbjct: 5 NFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPLLQ 64 Query: 62 ILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + + P+ L+L PTRELA Q+ +N + A+++GG+ Q Sbjct: 65 KIASQNSEP-APKQVLALVLAPTRELAIQIDQEVASLARNMRIRRAVVLGGVSKGPQINA 123 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RG VL+ TPGR+LD N ++ +E LV+DEADRM DMGFI I+ I +++P R Sbjct: 124 LKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPEAR 183 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +T LFSATM E++K + + L+ P R+++++ S + I+ + + ++K + L + Sbjct: 184 RTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVM--IVRTTEKQSRLHTI 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L + + K I+F K+ + L G S A HGN Q +R + L++F G I++ Sbjct: 242 L-ADEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRV 300 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ ++ HV NFD+P E Y+HR+GRT R G G A +L + + I Sbjct: 301 LVATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEIT 360 Query: 359 AIEKLIEKKVDWL 371 AIE+++++K++ + Sbjct: 361 AIERMMKQKLEVI 373 >gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138] gi|74661437|sp|Q6FW42|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1 gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata] Length = 725 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/385 (38%), Positives = 222/385 (57%), Gaps = 17/385 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL LS V+ + + GYVKP+PIQ TIP+ L D+ A TG+GKTA+F++P++ Sbjct: 208 FNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 267 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L A+V R ++L PTRELA QVAD +K G+ NLT L +GG+ Q + L+ Sbjct: 268 LLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKT 327 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D++I TPGR +DH N ++++E+LVIDEADRML+ GF + I SL+P RQT Sbjct: 328 RPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEIMSLLPSKRQT 387 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++++ L+ P RI ++ P A + FV + K +LL L++ Sbjct: 388 LLFSATMNSRIKQLISLSLKRPVRIMIDPPKQAATKLTQEFVRIRKRDHLKPSLLFNLIR 447 Query: 241 SQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 D K ++F +K L L G +V +HG++ Q R+ ++ FK + + Sbjct: 448 KLDPNGQKRIVVFVARKDMAHKLRIILGLLGMAVAELHGSLTQEQRLDSVNKFKSLQVPV 507 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-------- 350 ++ +DLA+RGLDIP + V N+D+P E Y+HR+GRT RAGR G++ T V Sbjct: 508 LICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSITFVGEASAERSI 567 Query: 351 -KEDIKHIDAIE----KLIEKKVDW 370 K+ I+ ++ E K + + VDW Sbjct: 568 VKDAIRGVNDSEIPGSKAVGRNVDW 592 >gi|226952982|ref|ZP_03823446.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC 27244] gi|294650564|ref|ZP_06727921.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC 19194] gi|226836303|gb|EEH68686.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC 27244] gi|292823561|gb|EFF82407.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC 19194] Length = 383 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 222/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLKLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K NL + L+GG+ F+ Q K Sbjct: 65 LLNNPIQEQRFRGE-PRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKK 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L+R D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 MLDRNFVDIIVATPGRLIDFVEQKEVWLDRIEFLVIDEADRLLDMGFIPSVKRIVRYSPS 183 Query: 177 T--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ ++ +L P +E+ T +E + K L Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNVDVEQRVYVVAKE--DKYKL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ + + +IF N++ V L L++ G+ V + G I Q R+K+L FK+G Sbjct: 242 LQDILRDE-PIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 301 KHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDA 360 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 361 FYLPEIEKAIGKKL 374 >gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 364 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 148/362 (40%), Positives = 215/362 (59%), Gaps = 10/362 (2%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 LS ++ A+ DAGY +PTPIQ IPL L+ +D+ G A TGTGKT +F +P++ L+KG+ Sbjct: 7 LSLELQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPIVEKLQKGK 66 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE-RGADVL 126 V+ L+L PTRELA QV + K L+ + GG + L+ + D+L Sbjct: 67 PDVK---ALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDILQNKNVDIL 123 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 I TPGRI D +R L ++ +E LV+DE D+MLDMGFI I+ I S +P R T +FSAT Sbjct: 124 IGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKERTTYMFSAT 183 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT-- 244 + ++ +++ FL++ + IE + + S + +L+ DT Sbjct: 184 VPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMI----KLSSPGEKIHELMHIIDTHP 239 Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304 M+ +IF KK+ +L L K+G A+HG++ QR R K LS FK G + +++A+D+ Sbjct: 240 MEKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSILIATDV 299 Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 AARGLDI DVG V N+++P E YIHRIGRTGR G+ GKAF+L+ ED K + I+KL Sbjct: 300 AARGLDIKDVGVVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLICPEDSKALWRIKKLR 359 Query: 365 EK 366 K Sbjct: 360 SK 361 >gi|156548270|ref|XP_001601432.1| PREDICTED: similar to GA21647-PA [Nasonia vitripennis] Length = 460 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 220/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLG+ + A D + PT IQ + IPL +Q DV G+A+TG+GKTA+F LP+L Sbjct: 24 LTWKDLGIVDSLCQACEDLKWKAPTKIQREAIPLTIQGKDVIGLAETGSGKTAAFALPIL 83 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R LIL PTRELA Q+++ FE G + + +++GG+ Q+ L Sbjct: 84 QALLENPQRYF---ALILTPTRELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLA 140 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + +++ LV+DEADR+L+M F + I ++P R+ Sbjct: 141 KKPHIIIATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERR 200 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATMT ++QK+ LQNP ++EV+T T E ++ +V ++ K L+ L Sbjct: 201 TLLFSATMTKKVQKLQRASLQNPVKVEVSTKYQTVEKLQQYYVFIPVKF-KDVYLVHIL- 258 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + + +IFC+ N + L GF +HG + Q R+ L+ FK ++ Sbjct: 259 -NELSGNSFMIFCSTCNNTMRTALLLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSIL 317 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR G + T V + D++ Sbjct: 318 ISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGISVTFVTQYDVELYQR 377 Query: 360 IEKLIEKKV 368 IE+LI K++ Sbjct: 378 IEQLIGKQL 386 >gi|327439299|dbj|BAK15664.1| superfamily II DNA and RNA helicase [Solibacillus silvestris StLB046] Length = 481 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/432 (34%), Positives = 240/432 (55%), Gaps = 31/432 (7%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F + LSP++ A+ D Y PT +Q K +P L+ D+ AQTG+GKTA+F +P+ Sbjct: 4 NFNEFPLSPELQNALKDLDYSTPTEVQQKVLPHALKEQDLIVKAQTGSGKTAAFAIPICE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +E + P+ L+L PTRELA QV + F G+ + L G PF Q +L++ Sbjct: 64 NIEWIENK---PQALVLTPTRELAVQVKEEFTNIGRYKRIKATALYGKQPFRYQQDELKQ 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 + + TPGR+LDH +G L ++ I +V+DEAD ML+MGFI ++ I + V + Sbjct: 121 KTHIAVGTPGRVLDHIEKGTLKLDKIRYVVLDEADEMLNMGFIEQVEAILAHVEHREVMM 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--L 239 LFSAT+ + ++K++ N+L +P IEV + + A IEH + Q +K A ++++ + Sbjct: 181 LFSATVPESIKKLASNYLNDPVDIEVQSEEA-APKIEHAVIE--VQDEEKTAAVEKIAVV 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ DT IIFC K V L L + +SV +HG +DQ +R+ +++++K G + + Sbjct: 238 ENPDTC---IIFCRTKDRVDALHDYLYDREYSVDKLHGGMDQSTRLLVMNDYKRGDFRYL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI ++ V N+D+P E Y+HR GRTGRAG+ GKA T V + + Sbjct: 295 VATDVAARGIDIENISLVINYDLPMEKEAYVHRTGRTGRAGKEGKAVTFVTPFEHDFLAG 354 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSH 419 IE+LI + K+D+ H + K+ FD++ ++ +K Sbjct: 355 IEELI--------------GFTITKVDLPTHEE------VEAKAEAFDKKMQSRPQKKKQ 394 Query: 420 IPLKESEKISKL 431 K I+KL Sbjct: 395 KNAKVDANITKL 406 >gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM 20712] Length = 417 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 218/371 (58%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F ++ L V+ + + + TP+Q +TIP++L+ D+ G AQTGTGKTA++ LP+L Sbjct: 1 MRFDEVNLDENVLQGIEAMNFQEMTPVQEQTIPVILEGKDIIGCAQTGTGKTAAYTLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 + L R +I+ PTRELA Q+ FE + ++ ++ GG ++ Q K Sbjct: 61 SRLVAEGNPDNHIRAVIMVPTRELAQQIDMQFEGFSYFLPISTTVVYGGGDGAGWDQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR+L H + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLLMGADVVIATPGRLLSHIANSGIDLSQVSYFILDEADRMLDMGFFDDIMQIVKQMPTK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSAT+ +++++++ L++P I + I+ ++ Q K A++Q+ Sbjct: 181 RQTILFSATLPPKIRQLAKQILKDPAEINIAISKPNEAIIQSAYICYETQ---KMAIIQE 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L S+ K IIF + K+ V +L +SL++ +V A+H +++Q R ++ +FK G Sbjct: 238 LF-SKPNRKKTIIFSSSKQKVKDLAYSLKRMKLNVAAMHSDLEQEQREAVMLDFKNGKTD 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+G V N+DVP+ E+YIHRIGRT RA G A T V + + Sbjct: 297 ILVATDIVARGIDIDDIGLVINYDVPHDPEDYIHRIGRTARANADGVAITFVCEPEQGKF 356 Query: 358 DAIEKLIEKKV 368 IE+ IEK + Sbjct: 357 HKIEEFIEKDI 367 >gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1 [Xenopus (Silurana) tropicalis] Length = 448 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 225/368 (61%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ V+C + G+ +PT IQI+ IP+ LQ D+ G+A+TG+GKT +F LP+L Sbjct: 21 FRELGVT-DVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 79 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ L+L PTRELA Q+++ FE G + A+++GGI +Q+ L + Sbjct: 80 TLLESPQRLY---ALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAK 136 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V+I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 137 KPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 196 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L++P + V++ T E ++ +V +++ K + L +L Sbjct: 197 FLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKF--KDSYLVYIL- 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N + L GF+ +HG + Q R+ L+ FK + +++ Sbjct: 254 NELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILL 313 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V++ D++ I Sbjct: 314 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 373 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 374 EHLIGKKL 381 >gi|260774368|ref|ZP_05883282.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14] gi|260610495|gb|EEX35700.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14] Length = 433 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 232/409 (56%), Gaps = 12/409 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD GL P+V+ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADFGLHPQVIEGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E + AL GG ++ Q K Sbjct: 71 LLTTPEAEGRKPNQPRAIIMAPTRELAIQIYNDAESLIATTGIKTALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 ++ G DVLI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 IQEGVDVLIGTTGRIIDFYKQKAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 + L LFSAT++ +Q+++ + NP+ + V T I E F Y K ALL Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEATQKTGHRIKEELF---YPSNEHKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q +++ + K I+F N K + SL G V + G++ Q+ R +IL F +G Sbjct: 248 QTIIEEEWPDK-AIVFANTKHRCEQVWGSLAADGHRVGLLTGDVPQKKRERILEQFTQGE 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ +E+Y+HRIGRTGRAG G + + +E Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDSEDYVHRIGRTGRAGESGSSISFACEEYAV 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKS 403 ++ AIE+ IE + + D ++L L K + + + R+ N +S Sbjct: 367 NLPAIEEYIEHSIPMSDYDPTALLTDLPKPLTLRSSSQQRRTNTTGSRS 415 >gi|153834694|ref|ZP_01987361.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01] gi|148868890|gb|EDL67950.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01] Length = 437 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 219/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P+V + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E + L AL GG ++ Q K Sbjct: 71 LLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+LI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ I+F N K ++ L G V + G++ Q+ R KIL F G + Sbjct: 249 TLIE-EEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ + Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + IE+ IE + + D S+L Sbjct: 368 LPPIEEYIEHAIPVSDYDASAL 389 >gi|115379574|ref|ZP_01466663.1| heliCase, c-terminal:dead/deah box helicase, n-terminal [Stigmatella aurantiaca DW4/3-1] gi|115363432|gb|EAU62578.1| heliCase, c-terminal:dead/deah box helicase, n-terminal [Stigmatella aurantiaca DW4/3-1] Length = 608 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 145/368 (39%), Positives = 201/368 (54%), Gaps = 2/368 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL P +V A+ GY +PTPIQ +P +L+ D+ GIA TGTGKTA+F LP+L Sbjct: 38 FESLGLLPPLVEALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLLQR 97 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + G L+L PTRELA QVA+ +YG+ ++V L GG Q + L+RG Sbjct: 98 ITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLKRG 157 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV++ TPGR LDH R L + + ++V+DEAD MLDMGF ++ I S P RQT L Sbjct: 158 VDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTAL 217 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQS 241 FSAT+ + ++E L+ P R+ + + + Y + K A L ++L Sbjct: 218 FSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLSRVLDV 277 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I+FC + V L SL G+ A + L+VA Sbjct: 278 EAPTA-AIVFCRTRTEVDELTLSLNGHGWRXXAXXXXXXXXXXXGXXXXRLSHSADLLVA 336 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + HV NFDVPN E Y+HRIGRTGRAGR G A TLV + + + IE Sbjct: 337 TDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIE 396 Query: 362 KLIEKKVD 369 KL ++++ Sbjct: 397 KLTGQRIE 404 >gi|331086825|ref|ZP_08335902.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409991|gb|EGG89426.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 529 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 222/369 (60%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ P++ AV G+ + +PIQ K IP+++ D+ G AQTGTGKTA+F +PML Sbjct: 6 FEELGICPEIQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPML-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 EK + + + ++L PTRELA QVA+ N KY + + V + GG Q + L Sbjct: 64 -EKIDPKNKKLQGIVLCPTRELAIQVAEEIRNLAKY--MHGIKVLPIYGGQEIVKQIRSL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++I TPGR++DH R + M + +++DEAD ML+MGF I+ I VP RQ Sbjct: 121 KSGTQLIIGTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEGVPEERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++++ F +N + I+V T IE + + K +L +LL Sbjct: 181 TVLFSATMPKAIMEITKKFQKNAELIKVTKKELTVPNIEQFYYEVKPK--NKEEVLTRLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 T K +IFCN KK V L +L +G+ +HG++ Q R +++ F+ G ++ Sbjct: 239 DIY-TPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V VFN+D+P E Y+HRIGRTGRAGR G++F+ V+ +++ + Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKE 357 Query: 360 IEKLIEKKV 368 I++ + K+ Sbjct: 358 IQRYCKTKI 366 >gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725] gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725] Length = 452 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/359 (39%), Positives = 213/359 (59%), Gaps = 11/359 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+LG++ ++ + D G + IQ T+P+ L D+ G A+TG GKT F +P+L Sbjct: 11 FAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDR 70 Query: 62 ILEKGRARV--RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + PR LI+ PTRELA QV + + + + +A + GG P+E Q K L Sbjct: 71 VFDDADIAPPDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLAAIYGGRPYEEQIKLL 130 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTR 178 +RG DV+I TPGR+LD RG L++ ++ I+V+DEAD MLD+GF+P I+ I +L Sbjct: 131 QRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAH 190 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF---VATYAQYSKKCALL 235 QT+LFSATM + +S F+ P I S A+ + H V A K A++ Sbjct: 191 QTMLFSATMPGAILNLSRQFMHKPVHIRAE---SEADEVTHETTRKVTFQAHRMDKVAVI 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +LQ+Q ++ IIF K++ L L ++GF V A+HG++ Q+SR K L F+ G Sbjct: 248 AHILQAQGRGRS-IIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGE 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ VP+ +IHRIGRTGRAG G A TLV +++ Sbjct: 307 VDILVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLVGYDEL 365 >gi|153215195|ref|ZP_01949876.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587] gi|153831172|ref|ZP_01983839.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39] gi|124114840|gb|EAY33660.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587] gi|148873341|gb|EDL71476.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39] gi|327485046|gb|AEA79453.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae LMA3894-4] Length = 460 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 225/368 (61%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L+ DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ +N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPTSIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDIAIE 367 >gi|237743040|ref|ZP_04573521.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1] gi|229433600|gb|EEO43812.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1] Length = 528 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F DLGLS KV+ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ ++DEAD ML+MGFI I+ I + ++ Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM DE+ KV++N ++ + + V + T + E + V ++ C ++ Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 358 LLQIQKAVKKEI 369 >gi|325663268|ref|ZP_08151718.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470722|gb|EGC73952.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium 4_1_37FAA] Length = 529 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 222/369 (60%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ P++ AV G+ + +PIQ K IP+++ D+ G AQTGTGKTA+F +PML Sbjct: 6 FEELGICPEIQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPML-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 EK + + + ++L PTRELA QVA+ N KY + + V + GG Q + L Sbjct: 64 -EKIDPKNKKLQGIVLCPTRELAIQVAEEIRNLAKY--MHGIKVLPIYGGQEIVKQIRSL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++I TPGR++DH R + M + +++DEAD ML+MGF I+ I VP RQ Sbjct: 121 KSGTQLIIGTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEGVPEERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++++ F +N + I+V T IE + + K +L +LL Sbjct: 181 TVLFSATMPKAIMEITKKFQKNAEVIKVTKKELTVPNIEQFYYEVKPK--NKEEVLTRLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 T K +IFCN KK V L +L +G+ +HG++ Q R +++ F+ G ++ Sbjct: 239 DIY-TPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V VFN+D+P E Y+HRIGRTGRAGR G++F+ V+ +++ + Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKE 357 Query: 360 IEKLIEKKV 368 I++ + K+ Sbjct: 358 IQRYCKTKI 366 >gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] Length = 436 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 211/364 (57%), Gaps = 5/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA L LS ++ ++ GY + TPIQ IP+VL+ D+ AQTG+GKTA+F LP++ Sbjct: 1 MSFASLSLSDFLLRSLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKK 118 L + PR L+L PTRELA QV E+Y G V + GG+ ++AQ K Sbjct: 61 ERLAGMEEQKAKPRFLVLVPTRELAVQVGAAIERYAEGAPRKARVLVAFGGVGYDAQMKA 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 G +V++ TPGR++D R ++++ +E+LV+DEADR+L +GF + I ++P R Sbjct: 121 AYAGVEVVVATPGRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q LLFSAT + ++ L++P +IE+ S E+I A + + LL+ L Sbjct: 181 QNLLFSATFPQNVVSLANALLKDPVKIELEAASRPVESIAQR--AIEVDGNSRTGLLRHL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+++ + ++F K+ N+ L+K G A+HGN+ Q R + L FK+ +++ Sbjct: 239 LETEG-WERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI + V N+D+P A +Y+HRIGRTGRAG G A + + H Sbjct: 298 LMATDVAARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFR 357 Query: 359 AIEK 362 IEK Sbjct: 358 LIEK 361 >gi|153801095|ref|ZP_01955681.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3] gi|124123328|gb|EAY42071.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3] Length = 460 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 224/368 (60%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L+ DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPTSIEQIAQSVTHNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDIAIE 367 >gi|15642559|ref|NP_232192.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587883|ref|ZP_01677639.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80] gi|153819936|ref|ZP_01972603.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457] gi|153823551|ref|ZP_01976218.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33] gi|227082681|ref|YP_002811232.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2] gi|254225949|ref|ZP_04919551.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51] gi|254851104|ref|ZP_05240454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10] gi|255744466|ref|ZP_05418418.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101] gi|262154711|ref|ZP_06028837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1] gi|298500611|ref|ZP_07010415.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757] gi|9657150|gb|AAF95705.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547853|gb|EAX57938.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80] gi|125621575|gb|EAZ49907.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51] gi|126509518|gb|EAZ72112.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457] gi|126518935|gb|EAZ76158.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33] gi|227010569|gb|ACP06781.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2] gi|254846809|gb|EET25223.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10] gi|255737991|gb|EET93384.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101] gi|262030551|gb|EEY49189.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1] gi|297540780|gb|EFH76837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757] Length = 460 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 225/368 (61%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L+ DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ +N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDIAIE 367 >gi|311897562|dbj|BAJ29970.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054] Length = 765 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/348 (40%), Positives = 196/348 (56%), Gaps = 6/348 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL VV A+ G P PIQ TIP L DV G +TG+GKT SF LP+LT Sbjct: 66 FGDLGLHDDVVRALAKRGVTTPFPIQAATIPDALAGKDVLGRGRTGSGKTLSFGLPLLTR 125 Query: 63 LEKG-RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G R + + PR LIL PTRELA QVAD E +G L + ++ GG Q LER Sbjct: 126 LADGERTKAKHPRGLILVPTRELAMQVADALEPFGSVLGLRLKVVCGGTSMSNQIYALER 185 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DVL+ TPGR+ D NRG M+ +EI V+DEAD+M DMGF+P + I LVP Q L Sbjct: 186 GVDVLVATPGRLRDLINRGSAKMDEVEIAVLDEADQMADMGFLPEVTEILDLVPAGGQRL 245 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ +E+ + + +L+NP EV+ + T+ H + + K + + Sbjct: 246 LFSATLENEIDTLVKRYLKNPVTHEVDPSAGAVTTMTHHILVVKPK--DKAPITSAIAAR 303 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + IIF + + L + G A+HG + Q +R ++L +FK+G + ++VA Sbjct: 304 KGRT---IIFVRTQMGADRVAQQLVESGVKADALHGGMTQGARTRVLGDFKDGYLNVVVA 360 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +D+AARG+ + + V N D ++Y+HR GRT RAGR G TLV Sbjct: 361 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVTLV 408 >gi|204927708|ref|ZP_03218909.1| ATP-dependent rna helicase, dead/deah box family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323050|gb|EDZ08246.1| ATP-dependent rna helicase, dead/deah box family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 457 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT D + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIHFAPATRQTLLFSATWPDAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|54301879|ref|YP_131872.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9] gi|46915299|emb|CAG22072.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9] Length = 455 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 216/374 (57%), Gaps = 23/374 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGL ++ + + Y +PTPIQ + IP VL D+ A TG+GKTA+F LPML Sbjct: 36 NFTELGLISPLLARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPMLQ 95 Query: 62 IL----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGG 109 L KG R LIL PTRELA QVAD+ + Y ++N + + GG Sbjct: 96 HLFLQQHLSSKSSKGNYVTR----LILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGG 151 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 + Q L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + Sbjct: 152 VSANTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSA 211 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQY 228 + L+P +QTLLFSAT +++Q +++ L +P +E+ S+ A T ++ F + Sbjct: 212 LLGLLPKNKQTLLFSATFPEQVQTLTQELLNDP--VEIQLQSADASTLVQRVFTVNKGE- 268 Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 K ALL L++ Q+ + +IF N K + +L L K+G + HG+ Q +R ++L Sbjct: 269 --KTALLAHLIK-QNEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVL 325 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 FK G I++++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A +L Sbjct: 326 DAFKAGEIEVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSL 385 Query: 349 VAKEDIKHIDAIEK 362 + +D H IEK Sbjct: 386 IDHDDYHHFKVIEK 399 >gi|71737101|ref|YP_273396.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557654|gb|AAZ36865.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. phaseolicola 1448A] Length = 482 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 222/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D ++P+++ A+ D G+ TPIQ + L+ D G AQTGTGKTA+F++ ++ Sbjct: 95 FHDFNIAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQ 154 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + + PR LI+ PTREL Q+A + K NL V +GG+ F+ Q K+ Sbjct: 155 LTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQ 214 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 LE R D+L+ TPGR+LD RG++ ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 215 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHK 274 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + ++ +E A + K LL Sbjct: 275 GERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG--ADKYKLL 332 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 333 YNLV-TDNGWGRVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 391 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 392 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 451 Query: 356 HIDAIEKLIEKKV 368 + AIE+ + +K+ Sbjct: 452 QLPAIEEKLGRKI 464 >gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis carolinensis] Length = 924 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 136/357 (38%), Positives = 209/357 (58%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + IP+ + D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGIPVAMSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF ++++ S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSVASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E I V +A K L Sbjct: 431 ERQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDITQ-IVEIFASGPNKWNWLT 489 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L + + ++F +K N L ++L+++G S+ +HG++DQ R K++S+FK+G Sbjct: 490 SRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVISDFKKGAF 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTHKD 606 >gi|224023569|ref|ZP_03641935.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM 18228] gi|224016791|gb|EEF74803.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM 18228] Length = 637 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 223/369 (60%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP++ A+ + GY P P+Q + IP +L +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R R+P+ LIL PTREL Q+A + Y K +L + + GG E+Q K L+ Sbjct: 64 KIDVSR---RVPQALILCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIESQIKSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D R ++ + +V+DEAD ML+MGF I I VP R T Sbjct: 121 AGVHIIVATPGRLIDLMERKVARLDTVADVVMDEADEMLNMGFTDSINAILEKVPEERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM+ E+ ++++ +L + K I + T + ++ + H +A+ K L++++ Sbjct: 181 LMFSATMSPEIARIAKTYLHDAKEITIGTKNEGSKNVHHIAYTVHAK--DKYLALKRVVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L + G++ ++HG + Q R ++ F++ +QL+V Sbjct: 239 FYPQI-YGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQCHLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDTESYTHRSGRTGRAGKTGVSIAIINLREKGKMREI 357 Query: 361 EKLIEKKVD 369 E++I+KK D Sbjct: 358 ERIIKKKFD 366 >gi|114561648|ref|YP_749161.1| ATP-dependent RNA helicase RhlB [Shewanella frigidimarina NCIMB 400] gi|122300890|sp|Q088J2|RHLB_SHEFN RecName: Full=ATP-dependent RNA helicase rhlB gi|114332941|gb|ABI70323.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 434 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/390 (36%), Positives = 231/390 (59%), Gaps = 15/390 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L P+++ A+ + G+ TPIQ ++P++L D+ G AQTGTGKT +F++ Sbjct: 11 FADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + + PR +I+ PTRELA Q+A + + + L V ++ GG +E Q Sbjct: 71 LLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRAV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L++G D+LI T GRI+D+ +G + +++I+ +V+DEADRM D+GFI I+ + +P Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 +R +LFSAT++ ++Q+++ + + +P+++E+ T++ I E F Y K LL Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIF---YPSMEDKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ +D I+F N K + L LE G V + G++ Q+ R++IL F G Sbjct: 248 LSLIE-EDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGE 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL I DV HV+N+D+P+ E+Y+HRIGRTGRAG+ G + + +E Sbjct: 307 IDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEEYAL 366 Query: 356 HIDAIEKLIEKKVDWLNGD----LSSLNPP 381 ++ IE I + N D L + PP Sbjct: 367 NLPEIETYINHSIPVSNYDKDALLDDIPPP 396 >gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 764 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/355 (40%), Positives = 214/355 (60%), Gaps = 4/355 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D G ++ A+ GY KPT IQ + +P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 215 NFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 274 Query: 62 -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I+++ + P +I PTRELA Q+ +K+ K YNL VA + GG+ Q K+L Sbjct: 275 HIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVAAVYGGVSKFEQFKEL 334 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++++ TPGR++D L M LV+DEADRM D+GF P I++I + RQ Sbjct: 335 KSGCEIVVATPGRLIDLLKMKALRMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 394 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++++++ L +P R+ V S E I+ + K LL+++ Sbjct: 395 TLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKMP 454 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + ++F +K V + + L + GF V A+HG+ DQ SRM+ L FK G ++ Sbjct: 455 GMIDD-GDVLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYHVL 513 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKED 353 VA+D+AARGLDI + V NFD+ + +IHRIGRTGRAG + G A+TL+ +++ Sbjct: 514 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 568 >gi|47217820|emb|CAG07234.1| unnamed protein product [Tetraodon nigroviridis] Length = 737 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/395 (35%), Positives = 225/395 (56%), Gaps = 22/395 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 103 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSGKTAAFIWPMLVH 162 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK Y+L + GG Q Sbjct: 163 IMDQKELEAGEG----PIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGGGSMWEQA 218 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 219 KALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 278 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT ++++++ + L +P R+ E + V S K + L Sbjct: 279 DRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQV-VELLLSGSDKWSWLT 337 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L + + +IF +K N L +L ++G+S+ +HG++DQ R K++S+FK+ + Sbjct: 338 RRLVEFTSSGSVLIFVTKKTNSEELATNLTQEGYSLGLLHGDMDQSERNKVISDFKKSNM 397 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 398 PILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKDSSF 457 Query: 354 ----IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 +++++ + + K++ DL+ NP K Sbjct: 458 AGDLVRNLEGANQAVSKELM----DLAMQNPWFRK 488 >gi|117921368|ref|YP_870560.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117613700|gb|ABK49154.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 487 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 219/364 (60%), Gaps = 4/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY++ T +Q + IPL L+ D+ AQTGTGKTASF LP+L Sbjct: 22 MKFDTLGLSSPILNAIAECGYLQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL 81 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L K + R L++ PTRELA QV N +KY + L + GG Q K +E Sbjct: 82 EQLSKQPNDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 141 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+ D + L ++++ LVIDEADRMLD+GF+ I+ + L+ QT Sbjct: 142 QGVDILVATPGRLFDIIGQFHLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQT 201 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT +D ++++S L P+ + V ++TA T+E + +K LL +L+ Sbjct: 202 MLFSATYSDAVKQLSHKMLNQPEWVNV-AENTTASTVEQ--LVYRVDKRRKAELLSELV- 257 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F + K+ +L L G S HG+ Q +R ++L +FK G ++++V Sbjct: 258 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 317 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N ++P AE+Y+HRIGRTGRAG G+A + V+ D + + I Sbjct: 318 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 377 Query: 361 EKLI 364 E LI Sbjct: 378 EALI 381 >gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B] gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B] Length = 474 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/362 (39%), Positives = 209/362 (57%), Gaps = 11/362 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P + A+ GY TP+Q +++PL+L DV A+TG+GKTA+F L +L Sbjct: 19 FSSLPLAPNQLDALDALGYKAMTPVQAQSLPLILSGRDVIVRAKTGSGKTAAFALGLLAT 78 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 + R + ++ PTRELA QV + N+ + LL GG+P Q L Sbjct: 79 INP---RFFGVQAFVMCPTRELADQVGKEIRRLASRMPNIKLVLLCGGVPLGPQRDSLSH 135 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI DH RG L + +++ LV+DEADRMLDMGF I+ I S +P RQTL Sbjct: 136 GAHIVVGTPGRIEDHLKRGSLNIESVKTLVLDEADRMLDMGFADAIKQIISGMPGDRQTL 195 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 LFSAT ++Q++S + +NP + V+ + IE F V + + + CAL + Sbjct: 196 LFSATYPQDIQRISRSIQRNPASVTVDDVAHNEAVIEQLFYEVNKHERQATLCALFEHYR 255 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + N ++FCN KK + L QG AIHG+++QR R ++L + ++ Sbjct: 256 PA-----NAVVFCNTKKQCDEVAVFLRGQGIEARAIHGDLEQRERDQVLLQLTNDSCPVL 310 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI D+ V N+++P E Y+HRIGRTGRAG GKA ++V + I A Sbjct: 311 VATDVAARGLDIKDLEMVVNYELPRDPEVYVHRIGRTGRAGAVGKACSIVVPAESPRIRA 370 Query: 360 IE 361 IE Sbjct: 371 IE 372 >gi|326526777|dbj|BAK00777.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 731 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 209/370 (56%), Gaps = 25/370 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++ + L +++ A+ GY KP+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPML+ Sbjct: 311 NWPESKLGTELLRAIEKVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLS 370 Query: 62 ILEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + + P +++ PTRELA Q+ + K+ + V ++GG E Q Sbjct: 371 YITRLPPISEDNEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQG 430 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K+ +G +V+I TPGR+LD R ++N +V+DEADRM+DMGF P + + +P Sbjct: 431 FKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 490 Query: 177 T-----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219 + R T +FSATM +++++ +L+NP + + T + I Sbjct: 491 SNLKPENEEEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQ 550 Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279 + + S+K + LQ++L K I+FCN KK+ N L+K GF V A+HG Sbjct: 551 NVIMV--KESEKMSRLQKILTDLGD-KTAIVFCNTKKSADNRAKDLDKAGFRVTALHGGK 607 Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339 Q R L F+ ++VA+D+A RG+DIPDV HV N+++P+ + Y HRIGRTGRA Sbjct: 608 SQDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRA 667 Query: 340 GRHGKAFTLV 349 G+ G A + + Sbjct: 668 GKKGLATSFL 677 >gi|323345624|ref|ZP_08085847.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis ATCC 33269] gi|323093738|gb|EFZ36316.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis ATCC 33269] Length = 548 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 228/375 (60%), Gaps = 12/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + TP+Q + IP +L + DV G+AQTGTGKTA+++LP+L Sbjct: 1 MYFDELNLNNNVLDALYDMHFDTCTPVQERCIPEILNKRDVLGVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT----VALLIG--GIPFEA 114 ++L+ G +I+ PTRELA Q+ + +G Y L+ VA+ G G ++ Sbjct: 61 SMLDDGGYPKDAINCIIMSPTRELAQQIDQAMQGFG--YYLSGVSSVAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + K L GADV+I TPGR + H + G + ++ + ++DEADRMLDMGF I I + Sbjct: 119 ELKSLRLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKQL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P T QT++FSATM D++++++ L+NP I++ S AE I Y ++K + Sbjct: 179 PPTCQTIMFSATMPDKIEELANTLLKNPVTIKLAV-SKPAEKIRQSAYVCYE--TQKMDI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ + + D +K IIF K+ V + +L+++ + +H +++Q R ++ FK G Sbjct: 236 IKNIFNAGD-LKRVIIFSGSKQKVKQITKALQQKNVNCGEMHSDLEQAQRDDMMFKFKSG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+ +RG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R G A TL+ ++DI Sbjct: 295 QLDVIVATDIISRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGVAITLINEDDI 354 Query: 355 KHIDAIEKLIEKKVD 369 + IEK + K V+ Sbjct: 355 YYFQQIEKFLGKPVE 369 >gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor] gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor] Length = 766 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/357 (40%), Positives = 215/357 (60%), Gaps = 4/357 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D G ++ A+ Y KPT IQ + +P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 220 NFQDCGFPVPLMNAIAKQAYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 279 Query: 62 -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I+++ + P +I PTRELA Q+ +K+ K YNL VA + GG+ Q K+L Sbjct: 280 HIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKEL 339 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G +V+I TPGR++D L M LV+DEADRM D+GF P I++I + RQ Sbjct: 340 KAGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 399 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++++++ L +P R+ V E I+ + K LL++L Sbjct: 400 TLLFSATMPYKVERLAREILTDPIRVTVGQVGGANEDIKQVVNVLPSDVEKMPWLLEKLP 459 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + ++F ++K V + L ++GF + A+HG+ DQ SRM+ L FK GT ++ Sbjct: 460 GMIDD-GDVLVFASKKARVDEIEKELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVL 518 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 VA+D+AARGLDI + V NFD+ + +IHRIGRTGRAG + G A+TL+ +++ + Sbjct: 519 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEAR 575 >gi|297581406|ref|ZP_06943329.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385] gi|297534244|gb|EFH73082.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385] Length = 460 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 225/368 (61%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L+ DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ +N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDIAIE 367 >gi|149908416|ref|ZP_01897079.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36] gi|149808579|gb|EDM68514.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36] Length = 438 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 223/373 (59%), Gaps = 20/373 (5%) Query: 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84 TPIQ +++P +L+ DV G +TG+GKTA+F L +L L+ R R++ TL+L PTREL Sbjct: 2 TPIQAQSLPSILEGKDVIGQGKTGSGKTAAFGLGLLQRLDVERFRIQ---TLVLCPTREL 58 Query: 85 AAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143 A QVA K + +N+ V L GG+PF Q LE GA +++ TPGR+LDH +G L Sbjct: 59 ADQVAKEIRKLARGIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPGRVLDHLTKGTLR 118 Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203 ++N+ V+DEADRML+MGF + I P RQTLLFSAT ++Q ++ + NP+ Sbjct: 119 LDNLTTFVLDEADRMLEMGFQDALDAIVEKAPSDRQTLLFSATFPKKIQAIAAKIMNNPE 178 Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263 +EV + + +H + + ++ ++ LL Q ++ +IFCN KK+V ++ Sbjct: 179 MVEVASTHDDSTIKQHFY--KVKNFGERLDTVRGLLL-QHKPESTVIFCNTKKDVQDVAD 235 Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323 L GFSV A+HG+++QR R + L F +I +MVA+D+A+RGLDI + V NF V Sbjct: 236 ELGHFGFSVIALHGDLEQRDRDQALVRFSNKSISVMVATDVASRGLDIESLDAVINFQVS 295 Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD----LSSLN 379 + +E ++HRIGRTGRAG G A+T+ +++ + L+E + + + +S LN Sbjct: 296 HDSEIHVHRIGRTGRAGSKGMAYTIFDEKEAYQV----ALLEDRFGMITPEALPPMSVLN 351 Query: 380 -----PPLEKIDI 387 PP+E I I Sbjct: 352 ESPMMPPMECIRI 364 >gi|313234298|emb|CBY10365.1| unnamed protein product [Oikopleura dioica] Length = 408 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 138/384 (35%), Positives = 224/384 (58%), Gaps = 19/384 (4%) Query: 16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM--- 72 + DAGY PTPIQ + IP+ +Q D+ G+A+TG+GKT +F++P+L ++ +R+ Sbjct: 17 ISDAGYKDPTPIQRQAIPIGMQNRDIIGVAETGSGKTLAFLVPLLVWIDSLPRNIRVEDA 76 Query: 73 ---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129 P +IL PTRELA Q+ + K+G + +IGG E Q KL G +++I T Sbjct: 77 DKGPYAMILAPTRELATQIEEEVVKFGSPLGIRSVAVIGGASREEQGLKLRMGCEIVIAT 136 Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189 PGR++D L+++ +V+DEADRM+DMGF P +Q I S +PF RQT++F+ATM Sbjct: 137 PGRLIDVIENRYLVLSQCTYIVLDEADRMIDMGFEPEVQKILSHMPF-RQTVMFTATMPP 195 Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248 ++++++ F++ P + + + A+ I + F Q +KK + +L+ ++ ++ G Sbjct: 196 PVERIAKTFMRRPCTVYIGSVGKAADRIVQKAFFVPDGQKAKK---MISILEDENCLEQG 252 Query: 249 --IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306 I+F NQKK L LEK G+ ++HG Q R L+ K G ++VA+D+A Sbjct: 253 PVIVFVNQKKGCDVLARQLEKYGYDAISLHGGKGQDQRDYALACIKNGEKNVLVATDVAG 312 Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 RG+DI DV + N+D+ E+Y HRIGRTGRAG+ GKA T + ++D + + +++ Sbjct: 313 RGIDIKDVSLILNYDMAKNIEDYTHRIGRTGRAGKSGKAVTFLTQDDSHNFYDLRQML-- 370 Query: 367 KVDWLNGDLSSLNPPLEKIDIAQH 390 + + SS P L++ AQ Sbjct: 371 ----IESECSSCPPELDRHPEAQQ 390 >gi|39939200|ref|NP_950966.1| superfamily II DNA/RNA helicase [Onion yellows phytoplasma OY-M] gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma OY-M] Length = 552 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 227/371 (61%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L + + A+ + ++ TPIQ IP +++ HDV G AQTGTGKT +F +P I Sbjct: 5 FEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIP---I 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 +EK +++ ++LIL PTREL QV + +K + Y + +A++ GG + Q + LE Sbjct: 62 IEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRALEA 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR +DH RGK+ ++ ++IL +DEAD ML MGF ++ I +P RQT+ Sbjct: 122 KPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEERQTV 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++K++ + ++ K ++V + IE + + K LL +LL Sbjct: 182 LFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYF--LVKEVDKAKLLVRLLDL 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F N KK+V + L+ +GF A+HG++ Q R +++NF++G I++++A Sbjct: 240 KKDY-SAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI D+ V N+D+P+ E Y+HRIGRTGRAG+ G A++L++ + + +E Sbjct: 299 TDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLE 358 Query: 362 KLIEKKVDWLN 372 +++K+ L+ Sbjct: 359 YYLKEKITLLD 369 >gi|325859866|ref|ZP_08172996.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS 18C-A] gi|327312944|ref|YP_004328381.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289] gi|325482792|gb|EGC85795.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS 18C-A] gi|326946277|gb|AEA22162.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289] Length = 628 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 229/377 (60%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+ P P+Q + IP +L R+DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ G + + ++L PTREL Q+AD+ + +GK +L +A + GG E Q +L Sbjct: 64 RIDTGS---KDTQAVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIETQIHQLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D +RGK ++ + +V+DEAD ML+MGF I I + VP R T Sbjct: 121 HGVQIIVATPGRLIDLMHRGKARLDKVSNVVLDEADEMLNMGFQESITEILTGVPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ ++++V++ +L + K I V + + AE + H + A+ K L++L+ Sbjct: 181 LLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNAR--DKYLALKRLVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+FC K + L K G++ ++HG++ Q+ R + F+ Q++V Sbjct: 239 FYPKI-YAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ ENY HR GRTGRAG+ G + +++ + + I Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHKVRNI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 E+ I K ++++G L + Sbjct: 358 EREIGK--EFVDGTLPA 372 >gi|308271521|emb|CBX28129.1| ATP-dependent RNA helicase rhlB [uncultured Desulfobacterium sp.] Length = 530 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/378 (37%), Positives = 218/378 (57%), Gaps = 8/378 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + + P+V+ + DAG+ TPIQ + +PL L DV G AQTGTGKTA+F+ + + Sbjct: 36 FDEFKIPPEVLMGLKDAGFTLCTPIQARALPLSLAGQDVAGQAQTGTGKTAAFLTTIASR 95 Query: 63 LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + RV R+P LI+ PTRELA Q+ + E ++ LT+ +IGGI ++ Q L + Sbjct: 96 ILSLENRVPRLPSALIVAPTRELAQQIHEEAEVLFRHTGLTLMQVIGGIDYQKQADMLRK 155 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179 G DV+ICTPGRI+D+F +G I+I+VIDEADR+LD+GF ++ I +P RQ Sbjct: 156 GVDVVICTPGRIIDYFKQGVFKTEGIKIIVIDEADRLLDLGFSKDMRYILQKLPNYSKRQ 215 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 ++LFSAT++ + +++ ++ P+ I V E I Y + L L Sbjct: 216 SMLFSATLSHRVMELTYEYMNLPEFISVTPEDVVVEGINQIL---YHVSKESKLSLLLGL 272 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ +IF N K +V L L+ G+ I G++ Q R ++ +K+G I+++ Sbjct: 273 LKREKWSRVLIFANTKSSVERLTGKLKGNGYPAEGITGDLPQSKRFSLMERYKKGNIKIL 332 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RG+ + D+ HV N+D+PN E Y+HRIGRT RAG+ G A L E + +++ Sbjct: 333 VATDVASRGIHVEDISHVINYDLPNDGEIYVHRIGRTARAGKEGSAICLSCDEFVLNLEN 392 Query: 360 IEKLIEKK--VDWLNGDL 375 IE I K V+W D Sbjct: 393 IENKIGYKIPVEWAEDDW 410 >gi|308497408|ref|XP_003110891.1| CRE-DDX-23 protein [Caenorhabditis remanei] gi|308242771|gb|EFO86723.1| CRE-DDX-23 protein [Caenorhabditis remanei] Length = 766 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 152/446 (34%), Positives = 233/446 (52%), Gaps = 49/446 (10%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++ + G +V AV + GY++PTPIQ + IP+ LQ DV G+A+TG+GKTA+F+LP+L Sbjct: 327 NWEEAGFPSEVYQAVKEIGYMEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 386 Query: 62 I------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +E+ R P +I+ PTRELA Q+ + K+GK ++ +IGG E Q Sbjct: 387 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLDIKTVSVIGGASREEQ 446 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL G +V+I TPGR+LD LL+N +++DEADRMLDMGF P +Q + +P Sbjct: 447 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYLP 506 Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM+ +++++ +L+ P + + + Sbjct: 507 ASNMKKDTDEFDNEEALMKGFQTRQKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGSA 566 Query: 211 SSTAETIEH-CFVATY-------AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262 E +E CF A + KK L+ L+ D + IIF NQK+ L Sbjct: 567 GKPTERVEQVCFFAYFIFIVYMVTSERKKKKLIDILMVETD--RPIIIFVNQKRGADVLA 624 Query: 263 HSLEKQG--FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320 L F +HG Q +R L + K G +++VA+D+A RG+DI DV V N+ Sbjct: 625 KGLVSVNPEFRASVLHGGKGQEAREYALQSLKSGESKILVATDVAGRGIDIKDVALVINY 684 Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380 D+ E+Y HRIGRTGRAG+HGKA T + ++D +++++ L +SS P Sbjct: 685 DMAKTIEDYTHRIGRTGRAGKHGKAITFLTQDDTAVFYDLKQVL------LESPVSSCPP 738 Query: 381 PLEKIDIAQHNHARKNNPIPQKSTGF 406 L + AQ + + Q T F Sbjct: 739 ELANHEAAQGKPGQYTSKKRQDETLF 764 >gi|212634502|ref|YP_002311027.1| DEAD box helicase [Shewanella piezotolerans WP3] gi|212555986|gb|ACJ28440.1| Helicase, DEAD box [Shewanella piezotolerans WP3] Length = 440 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/366 (39%), Positives = 218/366 (59%), Gaps = 12/366 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FADLGL P+++ A LDA Y PT IQ TIP V+ DV G A TG+GKTA+F LP++ Sbjct: 24 FADLGLIPELL-ATLDALAYQSPTAIQQSTIPAVIAGSDVLGGAITGSGKTAAFALPIIQ 82 Query: 62 ILEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116 +L K + R +LIL PTRELA QVAD+F +Y +N NL V + GG+ +Q Sbjct: 83 LLAKSAKQTRQSNYVSSLILVPTRELAQQVADSFMRYAQNIKPNLKVLAVYGGVSTNSQM 142 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L GAD+L+ TPGR+LD + + ++ + LV+DEADRML +GF + + +P Sbjct: 143 QSLRGGADILVATPGRLLDLMSSNAVKLDKVSSLVLDEADRMLSLGFTDELAALLEKLPA 202 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +QTLLFSAT +E+ ++++ L NP +EV S T+ + ++K LL Sbjct: 203 KKQTLLFSATFPEEVSLLTQSLLNNP--VEVQLQSEEKNTLVQRVITV--NRNRKTPLLV 258 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ D + +IF + K L L+ G + H + Q +R ++L FK G Sbjct: 259 ELIKQND-WQQILIFASAKYTCNRLAQKLDNAGITAEIFHSDKGQGARTRVLDGFKRGET 317 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++++A+D+AARG+DI + V N+++P +Y+HRIGR+GRAG G A +L++ ++ +H Sbjct: 318 RVLIATDIAARGIDIEKLPIVINYELPRSPADYMHRIGRSGRAGEAGLALSLISHDEYQH 377 Query: 357 IDAIEK 362 IEK Sbjct: 378 FKVIEK 383 >gi|254519975|ref|ZP_05132031.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA] gi|226913724|gb|EEH98925.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA] Length = 481 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 227/370 (61%), Gaps = 6/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ LS +++ A+ + G+ KP+ +Q + IP +L + D+ +QTG+GKTASF +P+ + Sbjct: 6 FENMNLSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGIPLCEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + +V+ LIL PTRELA QV ++ G+ + A + G PF Q ++L++ Sbjct: 66 VNVEENKVK---ALILVPTRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNEQIRELKQR 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++ TPGR++DH RG L +N+I+ ++IDEAD+ML+MGFI I ++ +P ++ T L Sbjct: 123 VHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKLPQSKNTAL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ E++ + N++ NP + + + + I + + K LL+ L Sbjct: 183 FSATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKY-LLKSLYAFT 241 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D ++ IIFCN K +V NL L+K+ SV +HG++DQ+ R+ + NFK +++VA+ Sbjct: 242 D--ESAIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+ I + +VFN++VP E+Y+HRIGR+GR + G A +LV+K + + ++ IE+ Sbjct: 300 DVAARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGERRFLNEIEE 359 Query: 363 LIEKKVDWLN 372 I ++ N Sbjct: 360 YINYSIEEAN 369 >gi|269968536|ref|ZP_06182542.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|269826871|gb|EEZ81199.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 372 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 219/370 (59%), Gaps = 19/370 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL P +V + Y +PTPIQ ++IP +L+ D+ G A TG+GKTA+F LP+L Sbjct: 10 FADLGLIPTLVERLEALEYSQPTPIQSRSIPDILEGKDIIGGANTGSGKTAAFSLPILQK 69 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113 + E R LIL PTRELA+QVA N + Y +Y+L TVA+ GG+ Sbjct: 70 IVQQDESNNRRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVN 126 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L G D+++ TPGR+LD + + ++ ++ LV+DEADRML +GF + I +L Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT D++ +++ L++P +EV S+ A T ++ F + K Sbjct: 187 LPEKKQTLLFSATFPDKVTTLAQQLLRDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 A+L L++ Q + +IF N K +L L K+G + HG+ Q +R ++L FK Sbjct: 242 AVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G IQ+++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G +L+ + Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 361 DYHHFKVIEK 370 >gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118] Length = 501 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A + Y KPTPIQ K IP L+ HD+ G+AQTG+GKTA+F +P+L Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 143 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 199 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 200 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+ T +T+ + TY Y Sbjct: 260 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 314 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 LL + + K IIF K N + LC+ LE FS A+HG+++Q RM L Sbjct: 315 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 366 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426 Query: 351 KEDIKHIDAIEKLIEKKV 368 + D++ I IE+++ KK+ Sbjct: 427 QYDLELILRIEEVLGKKL 444 >gi|114643643|ref|XP_001153944.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 443 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 139/359 (38%), Positives = 216/359 (60%), Gaps = 8/359 (2%) Query: 12 VVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70 V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L L + R+ Sbjct: 22 VLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 81 Query: 71 RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130 L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + ++I TP Sbjct: 82 F---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATP 138 Query: 131 GRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189 GR++DH K + ++ LV+DEADR+L+M F + I ++P R+T LFSATMT Sbjct: 139 GRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 198 Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249 ++QK+ L+NP + V++ T E ++ ++ +++ K L +L ++ + + Sbjct: 199 KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDTYLVYIL-NELAGNSFM 255 Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309 IFC+ N L GF+ +HG + Q R+ L+ FK +++A+D+A+RGL Sbjct: 256 IFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGL 315 Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ IE LI KK+ Sbjct: 316 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 374 >gi|305667304|ref|YP_003863591.1| DEAD box family ATP-dependent RNA helicase [Maribacter sp. HTCC2170] gi|88709351|gb|EAR01584.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Maribacter sp. HTCC2170] Length = 603 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 224/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F LGL ++ AV D G+ P+ +Q K IP++L+ D+ +AQTGTGKTA+F P++ Sbjct: 4 FEALGLQESLLNAVADMGFETPSEVQEKAIPILLEDETDLVALAQTGTGKTAAFGFPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 +K + R + LIL PTREL Q+ + + Y K ++ V + GG Q ++++ Sbjct: 63 --QKIDSESRTTQGLILSPTRELCLQITNELKLYSKYEKSINVVAIYGGASITEQARQIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D +RG + + I+ ++DEAD ML+MGF I++I S P + T Sbjct: 121 RGAQIVVATPGRMKDMISRGLVNITKIDYCILDEADEMLNMGFFEDIKDILSNTPDEKST 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++ F+ +PK I V +S A T++H + + + L++L Sbjct: 181 WLFSATMPREVSVIAKKFMHSPKEITVGDKNSGATTVQHEYYVVGGR--DRYPALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + ++FC K++ + L + G++ A+HG++ Q R ++++F++ IQ++V Sbjct: 239 TNPDIFS-VVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQMLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P+ E Y HR GRTGRAG+ G + +V + +++ I AI Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSEMRKIKAI 357 Query: 361 EKLIEKK 367 E I++K Sbjct: 358 ENKIKQK 364 >gi|153825787|ref|ZP_01978454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2] gi|254291477|ref|ZP_04962269.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226] gi|149740510|gb|EDM54625.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2] gi|150422667|gb|EDN14622.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226] Length = 460 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 225/368 (61%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ + G+ TPIQ +++P +L+ DV G +TG+GKTA+F L +L+ Sbjct: 6 FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ L+L PTRELA QVA + G+ +N+ V L GG+P Q LE Sbjct: 66 LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +L+ TPGRILDH ++ ++ ++ + LV+DEADRML+MGF ++ I + P RQTL Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++++ +N I+V T+ +I F ++ AL LL Sbjct: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHH 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q T + ++FCN K+ V N+ +L + GFSV +HG+++QR R + L F +I ++VA Sbjct: 242 QPT--SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFN+D+ E ++HRIGRTGRAG G AF+ + + + I+ Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359 Query: 362 KLIEKKVD 369 + ++ ++ Sbjct: 360 EYMDIAIE 367 >gi|332669674|ref|YP_004452682.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338712|gb|AEE45295.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484] Length = 590 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/375 (36%), Positives = 214/375 (57%), Gaps = 18/375 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD + P++V A+ DAG P PIQ T+P+ L RHD+ G A+TGTGKT F +P+L Sbjct: 48 FADFDVRPEIVQALADAGISHPFPIQAMTLPVALSRHDIIGQAKTGTGKTLGFGVPLLNA 107 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E G + P + L++ PTRELA QVA + ++ V + GG +E Q Sbjct: 108 VVAPGEDGYDALPAPGKPQALVVVPTRELAVQVAGDLATASARRSVRVVQVYGGRAYEPQ 167 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L +G DV++ TPGR++D + L + + +V+DEAD MLD+GF+P ++ + + P Sbjct: 168 IDALNKGVDVVVGTPGRMIDLLKQRHLDLTRVRTVVLDEADEMLDLGFLPDVETLLAATP 227 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST-AETIEHCFVATYAQYS-KKCA 233 +R T+LFSATM + ++ ++ P I P ++T+++ Y ++ K Sbjct: 228 ASRHTMLFSATMPGAVVAMARRYMTQPTHIRAADPDDDGSQTVKNIKQVVYRAHALDKVE 287 Query: 234 LLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 LL ++LQ+ NG I+F K+ + L ++GF+ A+HG++ Q +R + L Sbjct: 288 LLARMLQA-----NGRGLTIVFARTKRTAAKVADELVERGFAAGALHGDLGQGAREQALR 342 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 F+ G + ++VA+D+AARG+D+ DV HV N+ P + Y+HR GRTGRAG G A T V Sbjct: 343 AFRHGKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFV 402 Query: 350 AKEDIKHIDAIEKLI 364 +D+ I+K + Sbjct: 403 DWDDMPRWSLIDKAL 417 >gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276] gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276] Length = 484 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 221/376 (58%), Gaps = 13/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+SP++ A G+ KP+ IQ + IP L+ D+ G+AQTG+GKTA+F LP+L Sbjct: 40 FADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQT 99 Query: 63 LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + P+ L+L PTRELA Q++ G + A+L+GG+ +Q+ L Sbjct: 100 LWEN------PQPFFALVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIAL 153 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + V++ TPGR++DH K + +++ LV+DEADR+LD+ F P I + ++P R Sbjct: 154 SKRPHVIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKER 213 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATMT ++ K+ L P R+EV++ ST T+ ++ + +K LL Sbjct: 214 NTYLFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLK-NKDSYLL--Y 270 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ + + IIF + L L + GF +HG + Q R+ L+ FK G + Sbjct: 271 LANELSSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSI 330 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGLDIP V V N+D+P +++Y+HR+GRT RAGR GK+ TLV + D++ + Sbjct: 331 LVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQ 390 Query: 359 AIEKLIEKKVDWLNGD 374 IE I KK+ + D Sbjct: 391 RIESHIGKKMTSFDVD 406 >gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966] gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966] Length = 470 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 213/375 (56%), Gaps = 13/375 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DLG+ + A + PT IQ + IP LQ DV G+AQTG+GKTA+F +P+L Sbjct: 27 FSDLGVIEPICEACEKLHFSAPTDIQAQAIPHALQGRDVIGLAQTGSGKTAAFSIPILQG 86 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L PR L IL PTREL+ Q++ E G + A ++GG+ Q+ L Sbjct: 87 LWDD------PRPLFACILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMTQSIAL 140 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + V++ TPGR+ DH K + ++ LV+DEADR+LD+ F P I + +P R Sbjct: 141 SKRPHVIVATPGRLQDHLENTKGFSLRSLRYLVMDEADRLLDLDFGPIIDKLLQNIPKER 200 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +T+LFSATMT ++ K+ L+NP RIE+ T ST T++ ++ + ++ K L L Sbjct: 201 RTMLFSATMTTKVAKLQRASLRNPVRIEIGTKYSTVSTLQQYYL--FMPFAHKDTYLVHL 258 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q + I+F + L L GFS +HG + Q +R+ L+ FK G + Sbjct: 259 ANEQ-VGHSIIVFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSI 317 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MV +D+AARGLDIP V V NFD+P +++YIHR+GRT RAGR G++ TLV + D++ + Sbjct: 318 MVCTDVAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQYDVELLQ 377 Query: 359 AIEKLIEKKVDWLNG 373 IE I K++D G Sbjct: 378 RIEAAIGKRLDEFPG 392 >gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130] gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130] Length = 754 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 214/361 (59%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++ A+ G+ KPTPIQ TIP+ L D+ G A TG+GKTA+F++PML Sbjct: 176 FLQMNLSRPILKAISSLGFTKPTPIQASTIPVALLGKDIVGNAVTGSGKTAAFMIPMLER 235 Query: 63 L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L EKG+ R R LIL PTRELA Q + ++ G + ++ LL+GG+ +AQ L Sbjct: 236 LLYREKGK-RAAATRCLILLPTRELAVQCYEVGKRLGAHTDIQFCLLVGGLSLKAQEAAL 294 Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + DV++ TPGR++DH N +++++ILV+DEADRML GF + I P +R Sbjct: 295 RQRPDVVLATPGRLIDHVRNSVGFNLDSLDILVLDEADRMLSEGFADELTEIIKACPKSR 354 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATMTD + ++ + L P R+ V+ STA + FV + S + A+L L Sbjct: 355 QTMLFSATMTDSVDELIKMSLNKPVRLFVDPKRSTARGLIQEFVRIRKE-SDRPAMLVAL 413 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + Q IIF KK + G +HG++ Q R++ L +F+EG++ Sbjct: 414 CK-QTYKHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQALQSFREGSVDY 472 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+DLA+RGLDI V V N+D+P + Y+HR+GRT RAGR GK+ TLV + D K + Sbjct: 473 LMATDLASRGLDIKGVETVVNYDMPGQMAQYLHRVGRTARAGRKGKSVTLVGEADRKLLK 532 Query: 359 A 359 A Sbjct: 533 A 533 >gi|317504343|ref|ZP_07962329.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae DSM 15606] gi|315664534|gb|EFV04215.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae DSM 15606] Length = 625 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 139/375 (37%), Positives = 228/375 (60%), Gaps = 10/375 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ + A+ + G+ P P+Q + IP +L ++DV +AQTGTGKTA+F LP+L Sbjct: 4 FEELGVNENIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLPLL- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K A+ R + ++L PTREL Q+AD+ + + K + + + + GG Q + ++ Sbjct: 63 --QKVNAQDRATQAIVLSPTRELCVQIADDLKDFSKYIDGMHIVPVYGGADIRPQIRAIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G V++ TPGR++D NRG + + + +V+DEAD ML+MGF I I +P R T Sbjct: 121 HGTQVIVATPGRLVDLINRGVMELEKVNNIVLDEADEMLNMGFSDSINAIFEQLPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++KV++++L + K I V + + AE + H + Y +SK L + + Sbjct: 181 LLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIY---YLVHSKDKYLALKRIV 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 IIFC K + L K G++ A+HG++ Q+ R + F++ T+QL+V Sbjct: 238 DFHPRIFAIIFCRTKAETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + +++ ++ + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHIKEKWKVRQI 357 Query: 361 EKLIEKKVDWLNGDL 375 EK I K D+++G+L Sbjct: 358 EKQIGK--DFIDGEL 370 >gi|329962827|ref|ZP_08300712.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057] gi|328529384|gb|EGF56297.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057] Length = 428 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 223/371 (60%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ +V+ A+ + + TPIQ K+IP++L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MKFSELQLNEQVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +GR +I+ PTRELA Q+ E + ++ + GG I FE Q K Sbjct: 61 DKLSEGRHPEDSINCIIMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKHLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ N L NP +++ + ++ +V Q K +++ Sbjct: 181 RQTIMFSATMPAKIQQLANNILNNPAEVKLAVSKPADKIVQAAYVCYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q T + IIF + K V + +L++ +V +H +++Q R +++ FK G I Sbjct: 238 LFAEQ-TPERVIIFASSKIKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T +++++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356 Query: 358 DAIEKLIEKKV 368 IE +EK + Sbjct: 357 KNIENFLEKTI 367 >gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23] Length = 543 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A + Y KPTPIQ K IP L+ HD+ G+AQTG+GKTA+F +P+L Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 185 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 241 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 242 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 301 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+ T +T+ + TY Y Sbjct: 302 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 356 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 LL + + K IIF K N + LC+ LE FS A+HG+++Q RM L Sbjct: 357 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 408 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 409 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 468 Query: 351 KEDIKHIDAIEKLIEKKV 368 + D++ I IE+++ KK+ Sbjct: 469 QYDLELILRIEEVLGKKL 486 >gi|90413176|ref|ZP_01221172.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum 3TCK] gi|90325867|gb|EAS42319.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum 3TCK] Length = 419 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 220/377 (58%), Gaps = 9/377 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF++L L ++ A+ + GY +PT +Q + IP L DV A TGTGKTA+F+LPM+ Sbjct: 3 DFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPMIQ 62 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + R LIL PTRELA Q+AD+ KN +L + + GGI ++ + L Sbjct: 63 HLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHAELLG 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+++ TPGR++++ + IE L++DEADRMLDMGF + I + RQ+ Sbjct: 123 KTQDIVVATPGRLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVDRINHECRWRRQS 182 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQL 238 LLFSAT+ + +++ SE L+ P +EVN+ PS H K ALL+Q+ Sbjct: 183 LLFSATLEGKGVREFSETILKEP--VEVNSAPSRRERKKIHQLYLRCDDMGHKLALLEQI 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q + I+F + + L L I G + Q SR ++ F++G + + Sbjct: 241 LKHQ--AERSIVFVKTRDRLATLRDQLASMNVKCSWIQGEMAQLSRNNAIARFRDGDVNI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRT RAG+ G A +LV D I+ Sbjct: 299 LIATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIE 358 Query: 359 AIEKLIEKKV--DWLNG 373 + + +E++V ++NG Sbjct: 359 RVSRYMEEEVPERFING 375 >gi|41054055|ref|NP_956176.1| probable ATP-dependent RNA helicase DDX23 [Danio rerio] gi|38014376|gb|AAH60524.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Danio rerio] Length = 807 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 148/421 (35%), Positives = 226/421 (53%), Gaps = 41/421 (9%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++ + L P ++ + GY PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 379 NWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 438 Query: 62 IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 439 WITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 498 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 499 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIP 558 Query: 176 FT--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209 T RQT++F+ATM +++++ ++L+ P + + + Sbjct: 559 VTNQKPDTDDAEDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 618 Query: 210 PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269 E +E V ++ K+ LL+ L + IIF NQKK L SLEK G Sbjct: 619 AGKPHERVEQK-VILMSEGEKRKKLLEVLASGFEPPI--IIFVNQKKGCDVLAKSLEKMG 675 Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329 ++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+Y Sbjct: 676 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDY 735 Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389 IHRIGRTGRAG+ G A T + KED +++ I L +S+ P L AQ Sbjct: 736 IHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAI------LESPVSTCPPELANHPDAQ 789 Query: 390 H 390 H Sbjct: 790 H 790 >gi|325268230|ref|ZP_08134863.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella multiformis DSM 16608] gi|324989372|gb|EGC21322.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella multiformis DSM 16608] Length = 668 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 229/377 (60%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+ P P+Q + IP +L R+DV +AQTGTGKTA+F LP+L Sbjct: 39 FEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 98 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ G + + ++L PTREL Q+AD+ + +GK +L +A + GG E Q +L Sbjct: 99 RIDTGS---KDTQAVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIETQIHQLR 155 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D +RGK ++ + +V+DEAD ML+MGF I I + VP R T Sbjct: 156 HGVQIIVATPGRLIDLMHRGKARLDKVTNVVLDEADEMLNMGFQESITEILTGVPEDRNT 215 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ ++++V++ +L + K I V + + AE + H + A+ K L++L+ Sbjct: 216 LLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNAR--DKYLALKRLVD 273 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+FC K + L K G++ ++HG++ Q+ R + F+ Q++V Sbjct: 274 FYPKI-YAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQILV 332 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ ENY HR GRTGRAG+ G + +++ + + I Sbjct: 333 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHKVRNI 392 Query: 361 EKLIEKKVDWLNGDLSS 377 E+ I K ++++G L + Sbjct: 393 EREIGK--EFVDGTLPT 407 >gi|308446500|ref|XP_003087194.1| hypothetical protein CRE_11658 [Caenorhabditis remanei] gi|308260015|gb|EFP03968.1| hypothetical protein CRE_11658 [Caenorhabditis remanei] Length = 526 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 222/376 (59%), Gaps = 13/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PTP+Q +IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLDESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64 Query: 63 LE--------KGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPF 112 L K R + V P L++ PTRELA QV + + ++ + VA ++GG+PF Sbjct: 65 LAGQDTFVPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRVAAIMGGMPF 124 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q ++L +GA V++ TPGR+LD NR ++ ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 125 GKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDLVDALIVDEADRMLDLGFSEDLEAISD 183 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L +QTL+FSAT + ++E + P+RI + T ST I T + K Sbjct: 184 LALNRKQTLMFSATFAPRIINLAERMMNEPERIAIETGHSTNTDITQTLHWTDG-FEHKK 242 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL L +D + ++F + +++ L L + G SV A+HG + Q R + L + + Sbjct: 243 KLLTHWLNEED-VDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIR 301 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR GKA TL Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYR 361 Query: 353 DIKHIDAIEKLIEKKV 368 + I A+E +E ++ Sbjct: 362 ERGKIRALEDYLEARL 377 >gi|119470499|ref|ZP_01613202.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7] gi|119446200|gb|EAW27477.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7] Length = 408 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 207/370 (55%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++ L K++ A+ GY KPT IQ + IP LQ D+ A TGTGKTA+F++P + Sbjct: 1 MQFSEFDLDTKLLDAIDKMGYEKPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R R LI+ PTRELA Q+ + E K +L + ++ GGI + + Sbjct: 61 QYLLDFPRREPGFARVLIMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEIF 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+ DVLI TPGR++++ ++E+L+IDEADRMLDMGF + I RQ Sbjct: 121 EKNNDVLIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQ 180 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT+ D +++ +E L +P +E + I H +V Y K LL Sbjct: 181 CFLFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKI-HQWVHLADDYHHKLELLVNT 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L D K I+F ++ + L L G + G + Q RMK + NF G ++ Sbjct: 240 LNGPDVSK-AIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGRTKI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ D+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV DI + Sbjct: 299 LIATDVAARGIDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358 Query: 359 AIEKLIEKKV 368 +E+ IE+K+ Sbjct: 359 KVERYIEQKL 368 >gi|168235783|ref|ZP_02660841.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168819458|ref|ZP_02831458.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194736572|ref|YP_002114683.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712074|gb|ACF91295.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291228|gb|EDY30581.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205343740|gb|EDZ30504.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085851|emb|CBY95627.1| ATP-dependent RNA helicase DBP2 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 457 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT D + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404] gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404] Length = 483 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 235/418 (56%), Gaps = 24/418 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P ++ ++ + + KPTPIQ ++IP L+ D+ G+AQTG+GKTA+F +P+L Sbjct: 70 FKELNLVPDLLESIENMKFTKPTPIQSESIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 129 Query: 63 LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + P L+L PTRELA Q+ + F+ G + L + ++GG+ Q + L R Sbjct: 130 L----WHAQQPYFGLVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMR 185 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGRI+DH K + N++ LV+DEADR+LDM F P + I ++P R T Sbjct: 186 KPHIIVATPGRIMDHLEHTKGFTLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTKRTT 245 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT++++K+ L NP R+ V++ TA+ + + Y K +L LL Sbjct: 246 YLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGY--KNTILIHLL- 302 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ K+ I+F + GF+ +HG + Q R+ L+ FK T +++ Sbjct: 303 NEFMSKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANILI 362 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP V V N+D+P ++ YIHR+GRT RAGR GK+ +L+ + D++ I Sbjct: 363 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 422 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA--------RKNNPIPQKSTGFDRRK 410 E ++ K+ + PP E +D A H H R+ + +K G +RR+ Sbjct: 423 ESVLGYKLPKED------KPPKEVLD-ALHIHVDKATAEAIRQTKELHEKRGGNNRRR 473 >gi|160358662|sp|A6ZSX1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName: Full=Ribosomal RNA-processing protein 3 gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789] gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA [Saccharomyces cerevisiae RM11-1a] gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291] gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796] Length = 501 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A + Y KPTPIQ K IP L+ HD+ G+AQTG+GKTA+F +P+L Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 143 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 199 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 200 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+ T +T+ + TY Y Sbjct: 260 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 314 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 LL + + K IIF K N + LC+ LE FS A+HG+++Q RM L Sbjct: 315 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 366 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426 Query: 351 KEDIKHIDAIEKLIEKKV 368 + D++ I IE+++ KK+ Sbjct: 427 QYDLELILRIEEVLGKKL 444 >gi|320539202|ref|ZP_08038873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str. Tucson] gi|320030840|gb|EFW12848.1| putative ATP-dependent RNA helicase [Serratia symbiotica str. Tucson] Length = 440 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/355 (40%), Positives = 211/355 (59%), Gaps = 8/355 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L +++ A+ D GY +PT IQ + IP + DV G A TGTGKTA+F+LP+L Sbjct: 6 FSELELDERLIIALHDKGYDRPTAIQAEAIPPAMNGRDVLGSAPTGTGKTAAFLLPVLQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD + + +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E L++DEADRMLDMGF I+ I++ + QTL Sbjct: 126 NQDMVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEIISAETRWRNQTL 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT+ E + +E L+ P ++E + PS + ++ + A Q+ K ALL L Sbjct: 186 LFSATLEGEAIHAFAERILKEPVKVEAD-PSRRERKKILQWYYRADDVQH--KTALLVHL 242 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ D K+ +IF +++ V L L + G + C + G + Q R + + +G I + Sbjct: 243 LKQPDVQKS-VIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRIDV 301 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +VA+D+AARGLDI D+ HVFNFD+P A+ Y+HRIGRTGRAGR G A +LV D Sbjct: 302 LVATDVAARGLDIIDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHD 356 >gi|113461438|ref|YP_719507.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 129PT] gi|112823481|gb|ABI25570.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT] Length = 441 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/400 (35%), Positives = 222/400 (55%), Gaps = 10/400 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ GY +PT IQ+ IP +++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L++A + GG+ ++ + + Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAYQNHGEVFNK 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + +EIL+ DEADRML MGF Y + I + + RQTL Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQYAEEIAAETRWRRQTL 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ E L + L++P + + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFASRLLKDPVQFNAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + GI+F +++NV L L K+G + G + Q R K + K + ++V Sbjct: 245 NEQVSR-GIVFVRRRENVRELSEILRKRGIRSTYLEGEMAQTQRTKAIDKLKNDVVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HR+GRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYNADTYLHRVGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP----LEKIDIAQHNHAR 394 ++ + K + G NPP ++ + Q N A+ Sbjct: 364 KRYTGELLKPRIIEGLEPRTNPPKDGEIKTVSKKQKNRAK 403 >gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB] Length = 543 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A + Y KPTPIQ K IP L+ HD+ G+AQTG+GKTA+F +P+L Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 185 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 241 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 242 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 301 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+ T +T+ + TY Y Sbjct: 302 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 356 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 LL + + K IIF K N + LC+ LE FS A+HG+++Q RM L Sbjct: 357 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 408 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 409 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 468 Query: 351 KEDIKHIDAIEKLIEKKV 368 + D++ I IE+++ KK+ Sbjct: 469 QYDLELILRIEEVLGKKL 486 >gi|54026546|ref|YP_120788.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] gi|54018054|dbj|BAD59424.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] Length = 1148 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 214/371 (57%), Gaps = 10/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA+LG+ ++V A+ + G + IQ T+PL L D+ G A+TG GKT F +P+L Sbjct: 37 FAELGVRDEIVRALAEIGIERTFAIQELTLPLALAGEDLIGQARTGMGKTFGFGVPLLHR 96 Query: 61 -TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGK---NYN--LTVALLIGGIPFE 113 + G + PR L++ PTREL QV D+ + GK N+ L V + GG P++ Sbjct: 97 IATADSGTTPLDGTPRALVIVPTRELCIQVTDDLVRAGKYLRNHKGALKVTAIYGGRPYD 156 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +Q L G DV++ TPGR+LD + L++ I +LV+DEAD MLD+GF+P I+ I ++ Sbjct: 157 SQIAALREGVDVVVGTPGRLLDLAKQNHLILGKIGVLVLDEADEMLDLGFLPDIERILTM 216 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 VP RQT+LFSATM + ++ FL P I P +A A K Sbjct: 217 VPAKRQTMLFSATMPGPIITLARTFLTRPTHIRAEEPHDSAVHDRTAQFVYRAHALDKAE 276 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L+ ++LQ++ +IF K+ + L ++GF+V A+HG++ Q R K L F++ Sbjct: 277 LIARVLQAEGRGAT-MIFTRTKRTAQKVADDLAERGFAVGAVHGDLGQVQREKALDKFRK 335 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G A TL+ ++ Sbjct: 336 GVIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLIDWDE 395 Query: 354 IKHIDAIEKLI 364 + AI+ + Sbjct: 396 LNRWAAIDAAL 406 >gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO] Length = 501 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A + Y KPTPIQ K IP L+ HD+ G+AQTG+GKTA+F +P+L Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 143 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 199 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 200 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+ T +T+ + TY Y Sbjct: 260 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 314 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 LL + + K IIF K N + LC+ LE FS A+HG+++Q RM L Sbjct: 315 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 366 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426 Query: 351 KEDIKHIDAIEKLIEKKV 368 + D++ I IE+++ KK+ Sbjct: 427 QYDLELILRIEEVLGKKL 444 >gi|70728428|ref|YP_258177.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5] gi|68342727|gb|AAY90333.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5] Length = 496 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 221/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ D G+ TPIQ + + L D G AQTGTGKTA+F++ ++T Sbjct: 107 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLVSIITQ 166 Query: 62 ILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L+ + R PR LI+ PTREL Q+A + K L V +GG+ F+ Q K Sbjct: 167 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKH 226 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE R D+L+ TPGR+LD RG + ++ +E++V+DEADRMLDMGFIP ++ I P Sbjct: 227 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 286 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T+++ +++ + +P +E+ + + +E A + K LL Sbjct: 287 SERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASANVEQHIYAVAG--ADKYKLL 344 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + + + ++F N+K V + L + G + + G++ Q R+K L F+EG Sbjct: 345 YNLV-TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 403 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+A RG+ I + HV NF +P ++Y+HRIGRTGRAG G + + ++D Sbjct: 404 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSY 463 Query: 356 HIDAIEKLIEKKV 368 + +IE L+ +K+ Sbjct: 464 QLPSIEALLGRKI 476 >gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3] Length = 501 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A + Y KPTPIQ K IP L+ HD+ G+AQTG+GKTA+F +P+L Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 143 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 199 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 200 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+ T +T+ + TY Y Sbjct: 260 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 314 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 LL + + K IIF K N + LC+ LE FS A+HG+++Q RM L Sbjct: 315 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 366 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426 Query: 351 KEDIKHIDAIEKLIEKKV 368 + D++ I IE+++ KK+ Sbjct: 427 QYDLELILRIEEVLGKKL 444 >gi|118444590|ref|YP_878428.1| ATP-dependent RNA helicase [Clostridium novyi NT] gi|118135046|gb|ABK62090.1| ATP-dependent RNA helicase [Clostridium novyi NT] Length = 371 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 211/364 (57%), Gaps = 6/364 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF +LG+S ++ + G PTPIQ +I + DV AQTGTGKT +F+LP Sbjct: 3 DFKNLGISKNIIDILSREGIKSPTPIQENSIEFIKMGKDVIAEAQTGTGKTLAFLLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 I E + LI+ PTRELA Q+ + K K ++ + GG ++Q KKL+ Sbjct: 60 IFENISLESNFVQVLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQLKKLKG 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR+LDH NR + ++ ++ LV+DEAD+ML MGF ++ I S QTL Sbjct: 120 NIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIISYTSKKHQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM +++K++ +++ PK + V T + I+ FV K+ AL L + Sbjct: 180 CFSATMNSDVKKLAYRYMKEPKVVSVKAEEVTLKNIQQ-FVVETTDRRKQDALCSVLDED 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 M IIFC K+ V NL +L K+G++ +HG++ Q R +++ FK Q ++A Sbjct: 239 NPFM--AIIFCRTKRRVDNLEEALHKRGYNCDKLHGDLAQAKRERVMKKFKNMDTQYLIA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V HV+++D+P AE+YIHRIGRTGRAG GK + +D + ++ IE Sbjct: 297 TDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLETIE 356 Query: 362 KLIE 365 K I+ Sbjct: 357 KEIK 360 >gi|310779133|ref|YP_003967466.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM 2926] gi|309748456|gb|ADO83118.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM 2926] Length = 526 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 215/370 (58%), Gaps = 11/370 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60 +F LGLS K + +L+ G+ KP+PIQ TIP++L DV G AQTGTGKTA+F LP+L Sbjct: 6 EFKALGLSEKTLRPLLEKGFEKPSPIQALTIPVLLNGDKDVIGQAQTGTGKTAAFSLPIL 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +EK ++ ++L PTRELA QVA+ NL +A + GG E Q K+L Sbjct: 66 EKIEKSTGSIQ---AIVLAPTRELAVQVAEEMNSLSHGRNLRIAPVYGGQSIEFQIKQLR 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR++D NR L ++ I+ ++DEAD ML+MGF+ ++ I ++ Sbjct: 123 RGIDVVVGTPGRVIDLMNRKILKLDKIDYFILDEADEMLNMGFLEDVEMILQNTSKDKRM 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM E+ +V++ + + + V T + + V ++ C ++ Sbjct: 183 LFFSATMPKEILRVAKKHMGEHEVLAVKKTELTTNLTDQIYFEVKEKDKFEALCRIMDLE 242 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L GI+FC K +V L L+ +G+ +HG+I Q R L FKE I + Sbjct: 243 LDFY-----GIVFCRTKNDVNVLVGKLQDRGYDSEGLHGDISQNHREITLKRFKEKKINV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T + + + I Sbjct: 298 LIATDVAARGIDVNDLSHVINYAIPQDPESYVHRIGRTGRAGKEGTAITFITPSEYRKIL 357 Query: 359 AIEKLIEKKV 368 I+++++ ++ Sbjct: 358 QIQRIVKTEI 367 >gi|301155361|emb|CBW14827.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1] Length = 442 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/383 (36%), Positives = 216/383 (56%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP + Sbjct: 6 FEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPAIQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVA+ E+ + +L +A + GG+ ++ + Sbjct: 66 LLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVAYQNHGEVFNS 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + +E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +I+ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKIDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + GI+F ++++V L +L K+G + G++ Q R + K G + ++V Sbjct: 245 TEKVSR-GIVFVRRREDVRELSETLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVTHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEELLKARILEGLEPRTKPP 386 >gi|292493472|ref|YP_003528911.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4] gi|291582067|gb|ADE16524.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus Nc4] Length = 504 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 139/366 (37%), Positives = 214/366 (58%), Gaps = 11/366 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +S ++ A+ GY PT IQ + IP +L D+ G AQTGTGKTA+F +P+L Sbjct: 8 LSFDGFAISAPILQAIKQVGYETPTQIQARAIPHLLAGCDLMGQAQTGTGKTAAFAIPIL 67 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L R + P+ L+L PTRELA QVA+ F+ Y + + V + GG Q ++L Sbjct: 68 NRLALTR---KEPQALVLVPTRELAIQVAEAFQTYARYLEDFRVLPIYGGQSMGNQLRQL 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG V++ TPGRI+DH R LL++ + +V+DEAD ML MGFI ++ I +P RQ Sbjct: 125 KRGVHVIVGTPGRIMDHLRRKSLLLDKLTTVVLDEADEMLKMGFIEDVEWILGQMPAKRQ 184 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237 T LFSATM ++ ++ L +P I++ +++ I +C V+ + K L + Sbjct: 185 TALFSATMPSSVRHIASRHLHSPHDIKIKGKTASLPAINQRYCLVSDF----HKLDALTR 240 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ ++ IIF K L L +G++ A++G++ Q R K++ K+ T+ Sbjct: 241 MLEVEE-YDATIIFVRTKIATEELAKKLSARGYAAAALNGDMAQAQREKVVGQLKKNTLD 299 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ + HV N+D+P YIHRIGRTGRAGR G A VA + + + Sbjct: 300 IIVATDVAARGLDVKRISHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRML 359 Query: 358 DAIEKL 363 AI+K+ Sbjct: 360 SAIKKV 365 >gi|86142743|ref|ZP_01061182.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis MED217] gi|85830775|gb|EAQ49233.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis MED217] Length = 592 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 221/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F LGL+ ++ AV D G+ P+ +Q K IP++L+ DV +AQTGTGKTA+F P++ Sbjct: 4 FKALGLNDAILQAVTDMGFKAPSEVQEKAIPVLLREETDVVALAQTGTGKTAAFGFPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R + LIL PTREL Q+ + + Y + L V + GG + Q +++ Sbjct: 64 RID---VNNRNTQGLILSPTRELCLQITNELKNYSSHVKGLNVVAVYGGANIQEQARQIS 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D R + + I+ V+DEAD ML+MGF I I + P ++T Sbjct: 121 RGAQIIVATPGRMQDMMRRNMVDITGIDYCVLDEADEMLNMGFYEDITTILADTPKDKKT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++++ F+++P I V T + AE + H + A+ + L++L Sbjct: 181 WLFSATMPKEVARIAKQFMKSPIEITVGTKNMGAENVSHEYYMVNAR--DRYQALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + +IFC K++ + +L + G++ A+HG++ Q R ++ +F+ IQ++V Sbjct: 239 ANPEIFS-VIFCRTKRDTQKVAENLIEDGYNASALHGDLSQNQRDLVMKSFRNRQIQMLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HV N+ +P+ E Y HR GRTGRAG+ G + +V+K +++ I + Sbjct: 298 ATDVAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKTGISMVIVSKSELRKIRTL 357 Query: 361 EKLIEKK 367 EK+I KK Sbjct: 358 EKIINKK 364 >gi|323494504|ref|ZP_08099609.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546] gi|323311231|gb|EGA64390.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546] Length = 416 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 220/370 (59%), Gaps = 19/370 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGL P +V + + Y +PTPIQ IP VL D+ G A TG+GKTA+F LP+L Sbjct: 10 FADLGLLPTLVERLEELEYSQPTPIQSYAIPHVLDGRDIVGGANTGSGKTAAFSLPILQK 69 Query: 62 ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113 IL++ + R LIL PTRELA+QVA N + Y +Y+L TVA+ GG+ Sbjct: 70 ILQQDASDNRRGNYVSHLILVPTRELASQVAYNVKSY--SYHLRDKVKTVAVF-GGVSVN 126 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L G+D+++ TPGR+LD + + ++ ++ LV+DEADRML +GF + I L Sbjct: 127 PQMLALRGGSDIVVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILEL 186 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT D++ ++++ L+ P +EV S+ A T ++ F + K Sbjct: 187 LPEKKQTLLFSATFPDKVTTLAQHLLREP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 A+L L++ Q + +IF N K +L L K+G + HG+ Q +R ++L FK Sbjct: 242 AVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFK 300 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G IQ+++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G +L+ + Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 361 DYHHFKVIEK 370 >gi|331092062|ref|ZP_08340893.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402263|gb|EGG81834.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium 2_1_46FAA] Length = 528 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 221/369 (59%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ P++ AV G+ + +PIQ K IP++L+ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FEQLGICPEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +K + + + ++L PTRELA QVAD N KY + + V + GG Q + L Sbjct: 64 -QKVNPKNKKLQGIVLCPTRELAIQVADEIRNLAKY--MHGIKVLPIYGGQEIVKQIRSL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++I TPGR++DH R + M + +V+DEAD ML+MGF I+ I VP RQ Sbjct: 121 KNGTQIIIGTPGRVMDHMRRKTIKMEQVHTVVLDEADEMLNMGFREDIETILEGVPEERQ 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + ++++ F + + I+V T IE + + K +L +LL Sbjct: 181 TVLFSATMPKAIMEITKKFQKKAEVIKVTKKELTVPNIEQFYYEVKPK--NKEEVLARLL 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 T K ++FCN KK V L SL +G+ +HG++ Q R +++ F+ G ++ Sbjct: 239 DIY-TPKLSVVFCNTKKQVDLLVTSLLGRGYFAAGLHGDMKQVQRDRVMQGFRSGKTDIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ +V VFN+D+P E Y+HRIGRTGRAGR G++F+ V+ +++ + Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKE 357 Query: 360 IEKLIEKKV 368 I++ + K+ Sbjct: 358 IQRYCKTKI 366 >gi|298241052|ref|ZP_06964859.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM 44963] gi|297554106|gb|EFH87970.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM 44963] Length = 562 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 200/352 (56%), Gaps = 6/352 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L P + + TPIQ + IP +L DV G + TG+GKT ++ +P++ Sbjct: 4 FQDLPLQPATRAVLASMQITEQTPIQAEAIPALLAGKDVIGQSATGSGKTLAYAIPLIER 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L K + R+ + L+L PTRELA QV + LT ALL+GG +E Q L G Sbjct: 64 LAKNK---RVAQALVLVPTRELAVQVNSVLSTFAAPRRLTTALLVGGRRYEKQISALRYG 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A ++I TPGRI DH +G L++ +I I V+DEAD+MLD GF P I+ I P RQ L Sbjct: 121 AQIIIGTPGRIKDHLEQGNLVLRDIRICVLDEADQMLDSGFGPEIEQILETSPEDRQMAL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + K+ E +L++P ++ + + TIE V + K AL L +Q Sbjct: 181 FSATMPTWIAKLQEKYLKDPVKVTITPEAGVQSTIEQ-IVYQVPRGKKVEALCTLLASTQ 239 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + +IF K V L L GF+V HG+ QR+R +L F+ G +Q+++A+ Sbjct: 240 GDIS--LIFGRTKMGVERLGEQLSNLGFAVGTFHGDKSQRAREDVLMAFRRGQVQMLLAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 D+AARGLDI + V N+++P+ E + HRIGRTGR GR+GKA TL+ D+ Sbjct: 298 DVAARGLDIRGITQVINYELPDSDELFTHRIGRTGRMGRYGKAVTLLVPSDM 349 >gi|212692656|ref|ZP_03300784.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855] gi|237709374|ref|ZP_04539855.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA] gi|237725060|ref|ZP_04555541.1| ATP-dependent RNA helicase [Bacteroides sp. D4] gi|265754557|ref|ZP_06089609.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA] gi|212664734|gb|EEB25306.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855] gi|229436798|gb|EEO46875.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4] gi|229456430|gb|EEO62151.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA] gi|263234671|gb|EEZ20239.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA] Length = 624 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 227/377 (60%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP+++ A+ + GY P P+Q + IP +L +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +E + R+P+ LIL PTREL Q+A + Y K + L V + GG E+Q + L+ Sbjct: 64 KIE---VKKRVPQALILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIESQIRMLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D R + I +V+DEAD ML+MGF I I VP R T Sbjct: 121 AGVHIIVATPGRLIDLMERKVAKLETIADVVMDEADEMLNMGFTDSINAILEKVPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM+ E+ ++++ +L + K I + T + ++ + H +A+ K A L+++ Sbjct: 181 LMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAK--DKYAALKRIAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L + G++ ++HG + Q R ++ F++ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 E++I KK ++ G++ S Sbjct: 358 ERIINKK--FIMGEMPS 372 >gi|198243415|ref|YP_002215491.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937931|gb|ACH75264.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623237|gb|EGE29582.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 457 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 216/364 (59%), Gaps = 8/364 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VSLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQP 374 Query: 379 NPPL 382 + PL Sbjct: 375 SLPL 378 >gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM 70294] gi|160380651|sp|A7TJM9|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1 gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM 70294] Length = 752 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 147/384 (38%), Positives = 221/384 (57%), Gaps = 16/384 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS V+ + D GY KP+PIQ TIP+ L D+ A TG+GKTA+F++P++ Sbjct: 233 FNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIER 292 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L A+V R ++L PTRELA Q+AD +K GK + LT L +GG+ Q ++L+ Sbjct: 293 LLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKT 352 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D++I TPGR +DH N ++++E+LV+DEADRML+ GF + I +L+P RQT Sbjct: 353 RPDIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEILTLLPSKRQT 412 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ + L+ P RI +N P A + FV + K ALL L++ Sbjct: 413 LLFSATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQEFVRIRKRDHLKPALLFYLIR 472 Query: 241 SQDT--MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 D K ++F +K+ L L G V +HG++ Q R++ ++NFK + + Sbjct: 473 KLDGTGQKRIVVFVARKEMAHKLRIILGLLGMKVGELHGSLTQEQRLQSVNNFKSLEVPV 532 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED----- 353 ++ +DLA+RGLDIP + V NFD+P E Y+HR+GRT RAGR G++ T V + Sbjct: 533 LICTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 592 Query: 354 ----IKHID---AIEKLIEKKVDW 370 IK ++ + K + + V+W Sbjct: 593 VRSAIKSVEESSSKNKAVSRNVEW 616 >gi|37362659|ref|NP_011932.2| Rrp3p [Saccharomyces cerevisiae S288c] gi|81175193|sp|P38712|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName: Full=Ribosomal RNA-processing protein 3 gi|285809971|tpg|DAA06758.1| TPA: Rrp3p [Saccharomyces cerevisiae S288c] Length = 501 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A + Y KPTPIQ K IP L+ HD+ G+AQTG+GKTA+F +P+L Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 143 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 199 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 200 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+ T +T+ + TY Y Sbjct: 260 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 314 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 LL + + K IIF K N + LC+ LE FS A+HG+++Q RM L Sbjct: 315 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGSLDL 366 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426 Query: 351 KEDIKHIDAIEKLIEKKV 368 + D++ I IE+++ KK+ Sbjct: 427 QYDLELILRIEEVLGKKL 444 >gi|269137456|ref|YP_003294156.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202] gi|267983116|gb|ACY82945.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202] gi|304557530|gb|ADM40194.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda FL6-60] Length = 424 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 155/422 (36%), Positives = 233/422 (55%), Gaps = 12/422 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L P V+ A+ G+ TPIQ +PL + DV G AQTGTGKT +F+ Sbjct: 6 FADFALHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHY 65 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR LI+ PTRELA Q+ + E + L + L GG ++ Q + Sbjct: 66 LLTHPAIAERKTNQPRALIMAPTRELAVQIHSDAEPLAQETGLRLGLAYGGDGYDKQLRV 125 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE+G D+LI T GR++D+ +G + + I+++V+DEADRM D+GFI I+ + +P T Sbjct: 126 LEQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPTA 185 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 Q L LFSAT++ +++++ + N + +EV T I+ Y +K LLQ Sbjct: 186 QRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLLQ 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G I Sbjct: 244 TLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHI 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG GK+ +L +E + + Sbjct: 303 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGKSISLACEEYVLN 362 Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEKIDIAQHNHARKNNP-IPQKSTGFDRRKKNY 413 + AIE I V N D + P K N A P P++ +G R + Sbjct: 363 LPAIESYIGHSIPVSKYNSDALLKDLPAPKRLSRSRNGAGARRPGSPRRGSGAPRPNRKR 422 Query: 414 SS 415 S Sbjct: 423 SG 424 >gi|260591877|ref|ZP_05857335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella veroralis F0319] gi|260536161|gb|EEX18778.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella veroralis F0319] Length = 657 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 229/377 (60%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+ P P+Q + IP +L R+DV +AQTGTGKTA+F LP+L Sbjct: 28 FEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLPLLQ 87 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + ++L PTREL Q+AD+ + +GK +L +A + GG + Q +L Sbjct: 88 RIDTSS---KSTQAIVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIDTQIHQLR 144 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D +RGK ++ + +V+DEAD ML+MGF I I + VP R T Sbjct: 145 HGVQIIVATPGRLIDLMHRGKARLDQVRNVVLDEADEMLNMGFQESITEILTGVPEDRNT 204 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ +++KV++ +L + K I V + + AE++ H + A+ K L++L+ Sbjct: 205 LLFSATMSRDVEKVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAR--DKYLALKRLVD 262 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + I+FC K + L K G++ ++HG++ Q+ R + F+ Q++V Sbjct: 263 FYPKI-YAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQILV 321 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ ENY HR GRTGRAG+ G + +++ + + I Sbjct: 322 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNI 381 Query: 361 EKLIEKKVDWLNGDLSS 377 E+ I K ++++G L S Sbjct: 382 EREIGK--EFIDGTLPS 396 >gi|262369669|ref|ZP_06062997.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046] gi|262315737|gb|EEY96776.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046] Length = 383 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 227/374 (60%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLNLHPQLKRAIDALGFKDMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLVSVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + ++ K +L V L+GG+ F+ Q Sbjct: 65 LLNNPIQEQRYRGE-PRALILAPTRELALQIESDAKELTKFSDLHVVTLLGGVDFDKQKA 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L++ D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 QLDKKPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPR 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ +++ +L P +E+ T +E V A+ S K L Sbjct: 184 KEQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQR-VYMVAK-SDKYKL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ + ++ +IF N++ V L +L++ G+ V + G I Q R+K+L FK G Sbjct: 242 LQDILRDE-PIEKVMIFANRRDQVRKLYDNLKRDGYKVVMLSGEIAQDKRLKMLDQFKNG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV NF +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 301 QHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTRGVSISFLSEDDA 360 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I +K+ Sbjct: 361 FYLPEIEKAIGQKL 374 >gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR] Length = 485 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 143/372 (38%), Positives = 221/372 (59%), Gaps = 14/372 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ + A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 61 FKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 118 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P++L IL PTRELA Q+++ FE G ++ A+++GG+ +Q L Sbjct: 119 ----QALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + N++ LV+DEADR+LD+ F P + I ++P R Sbjct: 175 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRER 234 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237 +T LFSATM+ +++ + L NP R+ +++ T T+ ++ +Y K L Sbjct: 235 RTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKY--KDVYLVY 292 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ ++ I+F L L GF +HG + Q SR+ LS F+ + Sbjct: 293 LL-NEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRD 351 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V NFD+P+ ++ YIHR+GRT RAG+ G AF++V + DI+ Sbjct: 352 ILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVW 411 Query: 358 DAIEKLIEKKVD 369 IE + KK+D Sbjct: 412 LRIENALGKKLD 423 >gi|225441549|ref|XP_002281113.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 622 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 145/362 (40%), Positives = 204/362 (56%), Gaps = 23/362 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP+ L D+ AQTG+GKTA+F P+++ Sbjct: 165 FAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLSGKDLMACAQTGSGKTAAFCFPIISG 224 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + G+ AR P LIL PTREL+ Q+ D K+ + V + GG P Q Sbjct: 225 IMTGQFAQRPRGARTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQ 284 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174 ++LERG D+L+ TPGR++D R ++ + I L +DEADRMLDMGF P I+ I + Sbjct: 285 LRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMD 344 Query: 175 ---PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 P RQT+LFSAT E+Q+++ +FL + + V S+ + I + S K Sbjct: 345 MPPPGVRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQ--RVEFVHESDK 402 Query: 232 CALLQQLLQSQDTMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 + L LL +Q NG ++F KK +L H L GF IHG+ Q+ Sbjct: 403 RSHLMDLLHAQ--RANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQE 460 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G Sbjct: 461 REHALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTG 520 Query: 344 KA 345 A Sbjct: 521 LA 522 >gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201] gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201] Length = 555 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 211/372 (56%), Gaps = 12/372 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+ +V A+ G P PIQ T+P+ L D+ G A+TGTGKT F +P L Sbjct: 34 FADFGVRQDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQAKTGTGKTLGFGIPALQ- 92 Query: 63 LEKGR--------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 GR A+ P+ LI+ PTRELA QV + K N VA + GG P+E+ Sbjct: 93 RAVGRDDAGWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVATIYGGRPYES 152 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q +LE+G +V++ TPGR++D NR L ++++ ++V+DEAD MLD+GF+P ++ + + Sbjct: 153 QIAELEKGVEVVVGTPGRLID-LNRQHFLDLSHVRMVVLDEADEMLDLGFLPDVEKLLAT 211 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 VP RQT+LFSATM + ++ ++ P I P + V A + K Sbjct: 212 VPAVRQTMLFSATMPGPVVAMARRYMTRPMHIRAAAPDEGTTKKDIRQVIYRAHHLDKDE 271 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 ++ ++LQ++ ++ IIF K+ L L +GF+ +HG++ Q +R + L F+ Sbjct: 272 VVARILQAEGRGRS-IIFTRTKRAAAKLADELIHRGFAAAPLHGDLGQGAREQALRAFRN 330 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 + ++VA+D+AARG+D+ DV HV NF P + Y+HR GRTGRAG G A T V +D Sbjct: 331 SKVDVLVATDVAARGIDVEDVTHVINFQCPEDEKTYLHRTGRTGRAGNKGTAITFVDWDD 390 Query: 354 IKHIDAIEKLIE 365 + I+K +E Sbjct: 391 VPRWRLIDKALE 402 >gi|161784286|sp|Q5ACU6|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3 Length = 539 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 145/394 (36%), Positives = 222/394 (56%), Gaps = 14/394 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P ++ ++ + KPTPIQ + IP L+ D+ G+AQTG+GKTA+F +P+L Sbjct: 125 FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 184 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + L+L PTREL Q+ D F+ G + L + ++GG+ Q + L R Sbjct: 185 LWHAQQPYF---ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRK 241 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGRI+DH K + N++ LV+DEADR+LDM F P + I ++P R T Sbjct: 242 PHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTY 301 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT++++K+ L NP R+ V++ TA+ + + Y K +L LL + Sbjct: 302 LFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGY--KNTILIHLL-N 358 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K+ I+F + GF+ +HG + Q R+ L+ FK ++VA Sbjct: 359 EFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVA 418 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDIP V V N+D+P ++ YIHR+GRT RAGR GK+ +L+ + D++ IE Sbjct: 419 TDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIE 478 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 ++ KK+ + PP E +D A H H K Sbjct: 479 SVLGKKLPKED------KPPKEVLD-ALHVHVDK 505 >gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88] Length = 485 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 143/372 (38%), Positives = 221/372 (59%), Gaps = 14/372 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ + A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 61 FKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 118 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P++L IL PTRELA Q+++ FE G ++ A+++GG+ +Q L Sbjct: 119 ----QALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + N++ LV+DEADR+LD+ F P + I ++P R Sbjct: 175 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRER 234 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237 +T LFSATM+ +++ + L NP R+ +++ T T+ ++ +Y K L Sbjct: 235 RTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKY--KDVYLVY 292 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ ++ I+F L L GF +HG + Q SR+ LS F+ + Sbjct: 293 LL-NEYAGQSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRSRSRD 351 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V NFD+P+ ++ YIHR+GRT RAG+ G AF++V + DI+ Sbjct: 352 ILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVW 411 Query: 358 DAIEKLIEKKVD 369 IE + KK+D Sbjct: 412 LRIENALGKKLD 423 >gi|260775423|ref|ZP_05884320.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC BAA-450] gi|260608604|gb|EEX34769.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC BAA-450] Length = 410 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 213/369 (57%), Gaps = 5/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FA+L L ++ A+ + GY +PT IQ + IP L D+ A TGTGKTA+FVLP L Sbjct: 4 NFAELELDENLLVAIEEMGYTRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ 63 Query: 62 ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ R P R LIL PTRELA QVAD KN NL + + GG+ ++ L Sbjct: 64 YLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTNLNIFTITGGVQYQEHADILA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+++ TPGR++++ + IE L++DEADRMLDMGF P + ++S + +QT Sbjct: 124 KTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQT 183 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ + ++ + + L+ P I+ + I + + K ALL+ ++ Sbjct: 184 LLFSATLEGKGVEGFTADLLKEPAEIDAEPSRRERKKIAQWY-HRADDMAHKLALLKTII 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F ++ + L LEK I G + Q R ++ F++GT+ ++ Sbjct: 243 NDQ--AERSIVFLKTRERLAELRVELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A +LV D +D Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQTMMDR 360 Query: 360 IEKLIEKKV 368 + + +++++ Sbjct: 361 VARYVKEEI 369 >gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae] Length = 543 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 219/378 (57%), Gaps = 28/378 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A + Y KPTPIQ K IP L+ HD+ G+AQTG+GKTA+F +P+L Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 185 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 241 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 242 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 301 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+ T +T+ + TY Y Sbjct: 302 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 356 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 LL + + K IIF K N + LC+ LE FS A+HG+++Q RM L Sbjct: 357 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGSLDL 408 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 409 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 468 Query: 351 KEDIKHIDAIEKLIEKKV 368 + D++ I IE+++ KK+ Sbjct: 469 QYDLELILRIEEVLGKKL 486 >gi|255572248|ref|XP_002527063.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223533568|gb|EEF35307.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 650 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 215/387 (55%), Gaps = 26/387 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP+ L D+ AQTG+GKTA+F P+++ Sbjct: 190 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISG 249 Query: 63 LEKGR----------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 + K + AR+ P LIL PTREL+ Q+ + K+ + V + GG P Sbjct: 250 IMKMQGQSAQRPLRGARMVYPLALILSPTRELSMQIHEEARKFSYQTGVKVVVAYGGAPI 309 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q ++LERG D+L+ TPGR++D R ++ + + L +DEADRMLDMGF P I+ I Sbjct: 310 NQQLRELERGVDILVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFEPQIRKIVE 369 Query: 173 L----VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228 P RQT+LFSAT E+Q+++ +FL N + V S+ + I + Q Sbjct: 370 QNDMPRPGARQTMLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQRV--EFVQE 427 Query: 229 SKKCALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 S K + L LL +Q NG+ +F KK +L H L GF +IHG+ Sbjct: 428 SDKRSHLMDLLHAQ--RANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDRS 485 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q+ R + L +F+ G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG Sbjct: 486 QQEREQALRSFRSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG 545 Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEKK 367 + G A + + A+ L+++ Sbjct: 546 KSGLATAFFNEGNASLAMALADLMQES 572 >gi|197251196|ref|YP_002146376.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214899|gb|ACH52296.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 457 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPMRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom phytoplasma AYWB] Length = 547 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 227/371 (61%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L + + A+ + ++ TPIQ IP +++ HDV G AQTGTGKT +F +P I Sbjct: 5 FEQLPILEQTKKALKELNFIDTTPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIP---I 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 +EK +++ ++LIL PTREL QV + +K + Y + +A++ GG + Q + LE Sbjct: 62 IEKINPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRSLEA 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR +DH RGK+ ++ ++IL +DEAD ML MGF ++ I +P RQT+ Sbjct: 122 KPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEERQTV 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++K++ + ++ K ++V + IE + + K LL +LL Sbjct: 182 LFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFL--VKEVDKAKLLVRLLDL 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + I+F N KK+V + L+ +GF A+HG++ Q R +++NF++G I++++A Sbjct: 240 KKDY-STILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI D+ V N+D+P+ E Y+HRIGRTGRAG+ G A++L++ + + +E Sbjct: 299 TDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLE 358 Query: 362 KLIEKKVDWLN 372 +++K+ L+ Sbjct: 359 YYLKEKITLLD 369 >gi|302847755|ref|XP_002955411.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f. nagariensis] gi|300259253|gb|EFJ43482.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f. nagariensis] Length = 535 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 210/364 (57%), Gaps = 21/364 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + V+ V+ AG+ +PTPIQ + P+ L D+ G+A+TG+GKT +++LP + Sbjct: 115 FEEASFPEYVLAEVIRAGFKEPTPIQCQGWPMALLGRDLIGLAETGSGKTLAYLLPAVVH 174 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L+ G P L+L PTRELA Q+ +++G + + ++ GG P Q Sbjct: 175 INAQPYLQPGDG----PIVLVLAPTRELAVQIQQECQRFGSSSRIKNTVVYGGAPKGPQA 230 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L G +++I TPGR++D + + + LV+DEADRMLDMGF P I+ I + Sbjct: 231 RDLRSGVEIVIATPGRLIDMMDSRVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKK 231 RQTLL+SAT E+Q ++ +FL+NP ++ + +P A + +E V YA+Y + Sbjct: 291 DRQTLLWSATWPKEVQAIARDFLKNPYQVIIGSPELKANHNIRQIVE--MVEGYAKYPR- 347 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L++LL ++ + +IFC K+ L L G+ +HG+ Q+ R +L F Sbjct: 348 ---LRKLLDTEMDGRRILIFCETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEF 404 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K GT +M+A+D+AARGLD+ D+ V N+D+P AE+Y+HRIGRTGRAG HG A++ Sbjct: 405 KNGTHPIMLATDVAARGLDVKDIKVVVNYDMPKTAEDYVHRIGRTGRAGAHGTAYSFFTG 464 Query: 352 EDIK 355 D + Sbjct: 465 ADAR 468 >gi|187734959|ref|YP_001877071.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425011|gb|ACD04290.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 604 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 221/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LG+SP+++ A+ G+ P+ IQ + IP + D+ G++ TG+GKT +F +P L Sbjct: 7 FSALGISPEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPALEC 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121 ++ R + L L PTRELA Q+ +K + A+ I GG F Q L R Sbjct: 67 ID---PEERCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALRR 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++ TPGR++D G L ++ + +L++DEAD MLDMGF+ I+ I +P +QTL Sbjct: 124 GVQFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQTL 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM+ E+ ++ F++ P +I + P+ T TIE + +S + +L +LL + Sbjct: 184 FFSATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVV--FSSRIEVLSRLLDT 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +K G++F N KK V ++ L +G+ V +HG++ Q R +++ +F++G+++L+VA Sbjct: 242 -GKIKMGLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ DV V NF++P E+Y+HRIGRT RAGR GKA T V + D + IE Sbjct: 301 TDIAARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIE 360 Query: 362 KLIEKKV 368 + I K+ Sbjct: 361 RFIGVKL 367 >gi|156555544|ref|XP_001603956.1| PREDICTED: similar to vasa-like protein [Nasonia vitripennis] Length = 732 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 143/345 (41%), Positives = 205/345 (59%), Gaps = 17/345 (4%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-TILEKGRARVRM----- 72 +GY KPTP+Q IP++L D+ AQTG+GKTA+F++P++ T+L K R M Sbjct: 320 SGYTKPTPVQKYGIPILLSGRDLMACAQTGSGKTAAFLIPIIHTLLAKDRDLSDMSSANQ 379 Query: 73 --PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130 PR LI+ PTREL Q+ D K+ K+ L ++ GG Q K++ +G D+L+ TP Sbjct: 380 VEPRALIISPTRELTIQIFDEARKFSKDSVLKCHIIYGGTSTSHQMKQIFQGVDILVATP 439 Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI----TSLVPFTRQTLLFSAT 186 GR+LD +GK+ + IE +V+DEADRMLDMGF+P ++ + T P RQTL+FSAT Sbjct: 440 GRLLDLVGKGKITFDAIEFVVLDEADRMLDMGFLPDVEKVLRHDTMKPPGERQTLMFSAT 499 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS--QDT 244 E+Q+++ FL N + V S IE F + S K L++LL + Sbjct: 500 FPQEIQQLAAKFLNNYVFVTVGIVGSACTDIEQSFFE--VKKSDKRTKLKELLNEEIEQN 557 Query: 245 MKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 M NGI +F ++KK + L + F +IHG+ QR R + L +FK G + ++VA+ Sbjct: 558 MLNGILVFVSEKKTADFIAALLSEDNFPTTSIHGDRLQREREEALYDFKTGKMAILVATA 617 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 +AARGLDI +V HV N+D+P + YIHRIGRTGR G GKA + Sbjct: 618 VAARGLDIKNVRHVINYDLPKEIDEYIHRIGRTGRVGNKGKATSF 662 >gi|260775114|ref|ZP_05884013.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC BAA-450] gi|260609031|gb|EEX35191.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC BAA-450] Length = 433 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 221/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P+VV + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLHPQVVEGLKKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L E + PR +I+ PTRELA Q+ ++ E + AL GG ++ Q K Sbjct: 71 LLNTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAEPLVAETGIKAALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE+G DVLI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LEQGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + NP+ + V T I+ Y K +LLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELF--YPSNEHKMSLLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ + IIF N K ++ L G V + G++ Q+ R +IL F +G + Sbjct: 249 TLIE-EEWPERAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGEV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ + Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + IE+ IE + + D S+L Sbjct: 368 LPPIEEYIEHTIPVSDYDPSAL 389 >gi|254286224|ref|ZP_04961183.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226] gi|150423639|gb|EDN15581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226] Length = 438 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 220/383 (57%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD GL P+V+ + G+V TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T +GRA + PR +I+ PTRELA Q+ ++ E + L AL GG ++ Q Sbjct: 71 LLTTSAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+ G D+LI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L V + G++ Q+ R +IL F +G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE IE + + D S+L Sbjct: 367 NLPAIESYIEHAIPTSDYDPSAL 389 >gi|197100123|ref|NP_001125347.1| probable ATP-dependent RNA helicase DDX23 [Pongo abelii] gi|67460452|sp|Q5RC67|DDX23_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName: Full=DEAD box protein 23 gi|55727779|emb|CAH90640.1| hypothetical protein [Pongo abelii] Length = 820 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 227/423 (53%), Gaps = 45/423 (10%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L P ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + ++ + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 453 ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+ + +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVPSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572 Query: 177 T--------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632 Query: 211 SSTAETIEH-CFVATYAQYSKKC-ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 E +E F+ + ++ KK A+L+Q IIF NQKK L SLEK Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDP-----PIIIFVNQKKGCDVLAKSLEKM 687 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G++ C +HG Q R LSN K G ++VA+D+A RG+DI DV V N+D+ E+ Sbjct: 688 GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 YIHRIGRTGRAG+ G A T + KED +++ I L +SS P L A Sbjct: 748 YIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI------LESPVSSCPPELANHPDA 801 Query: 389 QHN 391 QH Sbjct: 802 QHK 804 >gi|254413664|ref|ZP_05027434.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179771|gb|EDX74765.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes PCC 7420] Length = 464 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/366 (37%), Positives = 214/366 (58%), Gaps = 5/366 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +LGLS + + + G+ PT IQ + IP +L DV +QTGTGKTA+F LPML Sbjct: 3 LSFNNLGLSEECLHQLEKLGFDTPTEIQSQAIPELLAGRDVVAQSQTGTGKTAAFSLPML 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ R + LIL PTRELA QVAD N + + + GG + Q + L+ Sbjct: 63 EQIDPN---ARGVQALILAPTRELARQVADAIRDLTSNRRVGIVTVYGGQSIDRQIRLLQ 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R A +++ TPGR++D +RG L ++ ++ +V+DEAD ML MGFI ++ I P RQT Sbjct: 120 RNAQMVVGTPGRVIDLLDRGDLKLDQVKWVVLDEADEMLSMGFIDDVKKILKQAPKERQT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSATM ++ + FL++P + V P +T IE V + K LQ +L Sbjct: 180 ACFSATMPKAIRDLVNQFLKSPVTVTVELPKATPARIEQ-RVYMIPRGCSKSKALQPILA 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D + +IF +++ L L+ G SV HG++ Q R ++LS F++ ++ +V Sbjct: 239 LEDP-EAALIFVRTRRSAAELTSQLQAAGHSVDEYHGDLSQSQRERLLSRFRQSQVRWVV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + HV N+D+P++ E+YIHRIGRTGRAG+ G A +L+ + + + I Sbjct: 298 ATDIAARGLDVDHLTHVINYDLPDQVESYIHRIGRTGRAGKTGTAISLIQPFERRKLHQI 357 Query: 361 EKLIEK 366 E+ + + Sbjct: 358 ERKVRQ 363 >gi|115757139|ref|XP_786173.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115973714|ref|XP_001179743.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 487 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 215/359 (59%), Gaps = 8/359 (2%) Query: 12 VVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70 V+C D + P+ IQ + +P+ LQ DV G+A+TG+GKT +F LP+L L + R+ Sbjct: 68 VLCEACDKLKWKTPSKIQTEALPVALQGKDVIGLAETGSGKTGAFALPILQALLETPQRL 127 Query: 71 RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130 L+L PTRELA Q+A+ FE G ++ +++GGI Q +L + V+I TP Sbjct: 128 F---ALVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKKPHVMIATP 184 Query: 131 GRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189 GR++DH K + ++ LV+DEADR+L+M F I I ++P R+T L+SATMT Sbjct: 185 GRLVDHLENTKGFNLRGLKYLVMDEADRILNMDFEAEIDKILKVIPKQRRTYLYSATMTK 244 Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249 ++ K+ LQ+P ++EV+T T ++ ++ A+Y K C L+ L ++ + + Sbjct: 245 KVAKLQRASLQDPVKVEVSTKYQTVSKLQQSYIFIPAKY-KDCYLVSIL--NEFAGNSFM 301 Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309 +FC+ N + L G + +HG + Q R+ L+ FK + +++A+D+A+RGL Sbjct: 302 VFCSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFKSKSRSILIATDVASRGL 361 Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ IE+LI+KK+ Sbjct: 362 DIPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQLIDKKL 420 >gi|260914551|ref|ZP_05921019.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325] gi|260631342|gb|EEX49525.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325] Length = 442 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 208/366 (56%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L P ++ A+ GY +PT IQ +TIP ++ DV G A TGTGKTA+F+LP + Sbjct: 6 FDDFDLDPALLKALAKKGYTRPTAIQQETIPAAMEERDVLGSAPTGTGKTAAFLLPAIQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ NL++A + GG+ ++ + + Sbjct: 66 LLDYPRRKPGAPRVLVLTPTRELAMQVAEQAEELSAFTNLSIATITGGVAYQNHGEVFNK 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++EIL+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ E L + L +P I+ + I+ F + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAGRLLTDPVEIDAEPSRRERKKIQQWFYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + GI+F +++ V L +L K+G + G + Q R + K G + ++V Sbjct: 245 -EEKVSRGIVFVRRREYVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK 366 ++ E+ Sbjct: 364 KRYTEE 369 >gi|317051436|ref|YP_004112552.1| DEAD/DEAH box helicase domain-containing protein [Desulfurispirillum indicum S5] gi|316946520|gb|ADU65996.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum S5] Length = 522 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 222/372 (59%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L +++ A+ D G+ TPIQ + +P ++ D G AQTGTGK+A+F++ ++ Sbjct: 108 FHDLNLPEELMHAIYDLGFAYCTPIQEQVLPRAIEGKDAIGKAQTGTGKSAAFLMTIICR 167 Query: 63 L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + +A + PR LIL PTRELA Q++ + + L + L GG+ Q ++L Sbjct: 168 LLSRPQEKASIGRPRALILAPTRELAMQISKDAHDLCRYTPLKIVTLFGGMDMNKQRQRL 227 Query: 120 ERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSLVPF 176 E A D+++ TPGR+LD + + + +EILVIDEADRMLDMGFIP ++ I +++ Sbjct: 228 ENEAVDIVVATPGRLLDLKYQKCVFLGKVEILVIDEADRMLDMGFIPDVRQIVNSTMPKH 287 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT+++E+ +++ ++ P +E+ T ET++ T + +K LL Sbjct: 288 LRQTLLFSATLSNEVTRLASAWMTEPFMVEIEPEQVTVETVDQLVYITTRE--EKFTLLW 345 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + +Q + I+F N++ +L L + G + + G + Q R++ L NF+EG I Sbjct: 346 NTI-NQANLTRVIVFANRRDETRHLSEKLTRYGVTNAILSGEVPQAKRIRTLENFREGKI 404 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+A RG+ + + HV N+++P E+Y+HRIGRTGRAG G + + + D + Sbjct: 405 AVLVATDVAGRGIHVDSISHVINYNLPENPEDYVHRIGRTGRAGASGISVSFACENDSFY 464 Query: 357 IDAIEKLIEKKV 368 I AIE I KK+ Sbjct: 465 IPAIEDYIGKKL 476 >gi|157736313|ref|YP_001488996.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri RM4018] gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri RM4018] Length = 516 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 219/369 (59%), Gaps = 9/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D + A+ +AG+ +P+PIQ + IP +L D+ G A TGTGKTA+F LP Sbjct: 1 MTFNDFNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL K +A+ + +I+ PTRELA QV+D ++GK + A + GG + Q K +E Sbjct: 59 -ILNKIKAKSGVEAVVIV-PTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIE 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + V++ TPGR LD RG + + +++DEAD MLDMGF+ I+ I + +P RQT Sbjct: 117 NSS-VIVATPGRFLDLL-RGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQT 174 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ +++ L+ P+ + + T I F + + AL++ L Sbjct: 175 LLFSATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVV-DEKERDDALIR--LF 231 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 K IIFC KK+V L L QGF A+HG+++Q+ R + + FK +++++ Sbjct: 232 DFKNPKKSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILI 291 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HVFN+ +P +E+Y+HRIGRTGRAG+ G A ++V + + + I Sbjct: 292 ATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKI 351 Query: 361 EKLIEKKVD 369 EK I K++ Sbjct: 352 EKSIGTKLE 360 >gi|269102593|ref|ZP_06155290.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162491|gb|EEZ40987.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] Length = 402 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 143/365 (39%), Positives = 214/365 (58%), Gaps = 21/365 (5%) Query: 27 IQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----------------EKGRARV 70 +Q + IPL L DV AQTGTGKTA+F LPML L + R + Sbjct: 1 MQEQAIPLALTGVDVMAGAQTGTGKTAAFALPMLHRLMSYPAASELHADEAEQTEQRKQP 60 Query: 71 RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130 + R L+L PTRELA QV DN Y K+ +L V + GG Q K L++GAD++I TP Sbjct: 61 ALIRGLVLTPTRELAQQVYDNVMTYCKHTDLKVVVAYGGTSMNVQVKALQQGADIVIATP 120 Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190 GR++DH + G L + +E V+DEADRMLDMGFI I+ I + RQTL FSAT + + Sbjct: 121 GRLIDHMHVGTLSLKYLECFVLDEADRMLDMGFIIDIKRIMKRMAAERQTLFFSATFSKQ 180 Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGII 250 ++K++ + + PK +EV ++ AET++ +K LL L+ S++ + ++ Sbjct: 181 VKKLAFDIMTEPKMVEVTPANTAAETVQQMVYPV--DKHRKRELLSYLIGSRN-WQQVLV 237 Query: 251 FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLD 310 F K+ L L G +I+G+ Q +R + L +FK G ++ +VA+D+AARG+D Sbjct: 238 FTKTKQGSDELVKELGLDGIKAASINGDKSQGARQRALDDFKSGKVRALVATDVAARGID 297 Query: 311 IPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV-- 368 I + +V NFD+P + E+Y+HRIGRTGRAG G A TL++ ++ + IE+L++ ++ Sbjct: 298 IEQLEYVVNFDMPFKPEDYVHRIGRTGRAGSAGHAITLMSLDEEWILKGIEELLDTRLPQ 357 Query: 369 DWLNG 373 WL G Sbjct: 358 QWLEG 362 >gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 442 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 221/368 (60%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F +LG+ ++V A + G+ PT IQI++IP L+ D+ G+AQTG+GKT +F LP+L + Sbjct: 11 FKELGVCDQLVTACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTGAFALPILQS 70 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LE V+ +L PTRELA Q+A+ FE G + + A+L+GG+ Q+ L + Sbjct: 71 LLEASEKSVQAFFACVLSPTRELAIQIAEQFEALGSDIGVKCAVLVGGVDMVQQSIALGK 130 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR++DH + K + ++ LV+DEADR+L+ F + I ++P R+T Sbjct: 131 RPHIVVATPGRLVDHLSNTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILKVIPRERRT 190 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT +++K+ L+NP +IE + ST +T++ + A+Y K C L+ L Sbjct: 191 FLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTLKQEYRFIPAKY-KDCYLVYIL-- 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F L L G I+G++ Q R+ L+ FK G +++ Sbjct: 248 TEKSGSTSMVFTRTCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALNKFKAGECNILI 307 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G A +LV + +++ I Sbjct: 308 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEVEWFIQI 367 Query: 361 EKLIEKKV 368 EKLI KK+ Sbjct: 368 EKLIGKKL 375 >gi|218258510|ref|ZP_03474866.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii DSM 18315] gi|218225386|gb|EEC98036.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii DSM 18315] Length = 610 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 226/384 (58%), Gaps = 10/384 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ ++ A+ + GY P P+Q + IP +L +DV +AQTGTGKTA+F LP Sbjct: 4 FEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGDDNDVIALAQTGTGKTAAFGLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 IL+K P+ L+L PTREL Q+AD+ Y K NL V + GG E+Q K L+ Sbjct: 61 ILQKIDVTTYQPQALVLCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR+LD NR + ++ ++ +++DEAD ML+MGF I I + VP R Sbjct: 121 RGVHVVVATPGRLLDLMNRKTVNLSLVKNVIMDEADEMLNMGFTDSINAILAEVPENRNM 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+ +++ +++NPK I + + + I + AQ K L+++ Sbjct: 181 LLFSATMPKEIAAITKRYMKNPKEIVIGNKNEGNKNIRDIYYMVRAQ--DKYLALKRIAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+FC +K + L + G++ ++HG + Q R ++ F+ IQL+V Sbjct: 239 FYPNIY-GIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKNIQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ ++ I I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKGKIREI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEK 384 E++I KK + G++ S + EK Sbjct: 358 ERIINKKFE--KGEIPSGSAICEK 379 >gi|207856830|ref|YP_002243481.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708633|emb|CAR32955.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 457 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 216/364 (59%), Gaps = 8/364 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQP 374 Query: 379 NPPL 382 + PL Sbjct: 375 SLPL 378 >gi|297581767|ref|ZP_06943689.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385] gi|297534174|gb|EFH73013.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385] Length = 438 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 220/383 (57%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD GL P+V+ + G+V TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T +GRA + PR +I+ PTRELA Q+ ++ E + L AL GG ++ Q Sbjct: 71 LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+ G D+LI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L V + G++ Q+ R +IL F +G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE IE + + D S+L Sbjct: 367 NLPAIESYIEHAIPTSDYDPSTL 389 >gi|325577158|ref|ZP_08147642.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC 33392] gi|325160740|gb|EGC72861.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC 33392] Length = 443 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 138/383 (36%), Positives = 216/383 (56%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP + Sbjct: 6 FEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPAIQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVA+ E+ + +L +A + GG+ ++ + Sbjct: 66 LLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVAYQNHGEVFNS 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + +E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +I+ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKIDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + GI+F ++++V L +L K+G + G++ Q R + K G + ++V Sbjct: 245 TEKVSR-GIVFVRRREDVRELSDTLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVTHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEELLKARILEGLEPRTKPP 386 >gi|47221754|emb|CAG08808.1| unnamed protein product [Tetraodon nigroviridis] Length = 1046 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 152/443 (34%), Positives = 243/443 (54%), Gaps = 17/443 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + G+S K++ A+ Y KPTPIQ + IP V+ D+ GIA+TG+GKT +F+LPM Sbjct: 345 WVQCGVSMKILSALKKHTYEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTIAFLLPMFRH 404 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R P +I+ PTRELA Q+ +K+ K L V + GG Q +L+ Sbjct: 405 IMDQRPLEESEGPIAVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELK 464 Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I V Sbjct: 465 RGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDSVRPD 524 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQ 236 RQT++FSAT ++ ++ L P ++V S +E H V + K L Sbjct: 525 RQTVMFSATFPRAMEALARRILNKPIEVQVGGRSVVCSDVEQHVLVI---EEDNKFLKLL 581 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +LL + IIF +++++ L L K + ++HG IDQ R I+++FK G Sbjct: 582 ELLGHYQERGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKSGAC 641 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +LMVA+ +AARGLD+ + V N++ PN E+Y+HR GRTGRAG G A+T + ++ ++ Sbjct: 642 RLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARY 701 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 I K +E L+G SS+ P LE++ ++ + + I + S+GF + + + Sbjct: 702 AGDIIKALE-----LSG--SSVPPELEQLWVSFKDQQKAEGKIIKSSSGFSGKGFKF-DE 753 Query: 417 KSHIPLKESEKISKLQQDIQEND 439 H E +K+ K +Q++D Sbjct: 754 TEHALANERKKLQKAALGLQDSD 776 >gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22] gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22] Length = 516 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 219/369 (59%), Gaps = 9/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D + A+ +AG+ +P+PIQ + IP +L D+ G A TGTGKTA+F LP Sbjct: 1 MTFNDFNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 IL K +A+ + +I+ PTRELA QV+D ++GK + A + GG + Q K +E Sbjct: 59 -ILNKIKAKSGVEAVVIV-PTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIE 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + V++ TPGR LD RG + + +++DEAD MLDMGF+ I+ I + +P RQT Sbjct: 117 NSS-VIVATPGRFLDLL-RGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQT 174 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ +++ L+ P+ + + T I F + + AL++ L Sbjct: 175 LLFSATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVV-DEKERDDALIR--LF 231 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 K IIFC KK+V L L QGF A+HG+++Q+ R + + FK +++++ Sbjct: 232 DFKNPKKSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILI 291 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ DV HVFN+ +P +E+Y+HRIGRTGRAG+ G A ++V + + + I Sbjct: 292 ATDVAARGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKI 351 Query: 361 EKLIEKKVD 369 EK I K++ Sbjct: 352 EKSIGTKLE 360 >gi|238918068|ref|YP_002931582.1| ATP-dependent RNA helicase RhlB [Edwardsiella ictaluri 93-146] gi|238867636|gb|ACR67347.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 424 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 153/423 (36%), Positives = 237/423 (56%), Gaps = 14/423 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L P V+ A+ G+ TPIQ +PL + DV G AQTGTGKT +F+ Sbjct: 6 FADFALHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHY 65 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR LI+ PTRELA Q+ + E + L + L GG ++ Q + Sbjct: 66 LLTHPAIAERKTNQPRALIMAPTRELAVQIHSDAEPLAQETGLRLGLAYGGDGYDKQLRV 125 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE+G D+LI T GR++D+ +G + + I+++V+DEADRM D+GFI I+ + +P T Sbjct: 126 LEQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPTA 185 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 Q L LFSAT++ +++++ + N + +EV T I+ Y +K LLQ Sbjct: 186 QRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLLQ 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G I Sbjct: 244 TLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHI 302 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E + + Sbjct: 303 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYVLN 362 Query: 357 IDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 + AIE I V NGD L L P +++ +++ + P++ +G R + Sbjct: 363 LPAIESYIGHSIPVSKYNGDALLKDLPAP-KRLSRSRNGTGARRPGSPRRGSGAPRPNRK 421 Query: 413 YSS 415 S Sbjct: 422 RSG 424 >gi|15640333|ref|NP_229960.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591056|ref|ZP_01678369.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80] gi|121729652|ref|ZP_01682129.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52] gi|147674746|ref|YP_001218575.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395] gi|153803135|ref|ZP_01957721.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3] gi|153822829|ref|ZP_01975496.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33] gi|153827161|ref|ZP_01979828.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2] gi|153831014|ref|ZP_01983681.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39] gi|227080519|ref|YP_002809070.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2] gi|229506898|ref|ZP_04396406.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286] gi|229509271|ref|ZP_04398754.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33] gi|229512687|ref|ZP_04402155.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21] gi|229516215|ref|ZP_04405663.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9] gi|229520976|ref|ZP_04410397.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80] gi|229524737|ref|ZP_04414142.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis VL426] gi|229527200|ref|ZP_04416593.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)] gi|229606411|ref|YP_002877059.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236] gi|254227021|ref|ZP_04920581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51] gi|254851439|ref|ZP_05240789.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10] gi|255744103|ref|ZP_05418057.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101] gi|262161995|ref|ZP_06031012.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1] gi|262167974|ref|ZP_06035673.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27] gi|262192566|ref|ZP_06050716.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93] gi|298500937|ref|ZP_07010739.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757] gi|32363416|sp|Q9KV52|RHLB_VIBCH RecName: Full=ATP-dependent RNA helicase rhlB gi|189040085|sp|A5F3R4|RHLB_VIBC3 RecName: Full=ATP-dependent RNA helicase rhlB gi|254797692|sp|C3LQR1|RHLB_VIBCM RecName: Full=ATP-dependent RNA helicase rhlB gi|9654717|gb|AAF93479.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547089|gb|EAX57224.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80] gi|121628586|gb|EAX61065.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52] gi|124121326|gb|EAY40069.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3] gi|125620457|gb|EAZ48831.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51] gi|126519647|gb|EAZ76870.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33] gi|146316629|gb|ABQ21168.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395] gi|148873506|gb|EDL71641.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39] gi|149738958|gb|EDM53276.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2] gi|227008407|gb|ACP04619.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2] gi|227012164|gb|ACP08374.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395] gi|229335208|gb|EEO00692.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)] gi|229338318|gb|EEO03335.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis VL426] gi|229341861|gb|EEO06862.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80] gi|229346641|gb|EEO11611.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9] gi|229350197|gb|EEO15149.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21] gi|229353586|gb|EEO18523.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33] gi|229356003|gb|EEO20922.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286] gi|229369066|gb|ACQ59489.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236] gi|254847144|gb|EET25558.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10] gi|255738368|gb|EET93759.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101] gi|262023507|gb|EEY42209.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27] gi|262028373|gb|EEY47029.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1] gi|262031611|gb|EEY50199.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93] gi|297540441|gb|EFH76500.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757] gi|327483175|gb|AEA77582.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae LMA3894-4] Length = 438 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 220/383 (57%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD GL P+V+ + G+V TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T +GRA + PR +I+ PTRELA Q+ ++ E + L AL GG ++ Q Sbjct: 71 LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+ G D+LI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L V + G++ Q+ R +IL F +G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE IE + + D S+L Sbjct: 367 NLPAIESYIEHAIPTSDYDPSAL 389 >gi|242278297|ref|YP_002990426.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638] gi|242121191|gb|ACS78887.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM 2638] Length = 521 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 218/370 (58%), Gaps = 11/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LGLS ++ A+ G+ PTPIQ KTIP++L D+ G AQTGTGKTA+F LP++ Sbjct: 4 FRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLPIIE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + +G V+ ++L PTRELA QVAD + + + VA + GG P Q K L+R Sbjct: 64 NVREGAGHVQ---AIVLTPTRELAMQVADEIISFRGSRKVFVATVYGGQPMLPQLKALKR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GAD+++ TPGR+LDH R L ++ I V+DEAD M +MGF+ + I R+TL Sbjct: 121 GADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRRTL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 LFSATM E+ +++ F+ + + V A E F V ++ C +++ Sbjct: 181 LFSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALC----RVV 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q G++FC + + + +L ++G+ IHG++ Q R IL F++ +++ Sbjct: 237 DAQPEF-YGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKIL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+PD+ HV NF +P ++++HR+GRTGRAG+ G A TL+ + + Sbjct: 296 VATDVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLRY 355 Query: 360 IEKLIEKKVD 369 I K+ + +VD Sbjct: 356 ITKITKLRVD 365 >gi|126663594|ref|ZP_01734591.1| putative RNA helicase dead-box protein [Flavobacteria bacterium BAL38] gi|126624542|gb|EAZ95233.1| putative RNA helicase dead-box protein [Flavobacteria bacterium BAL38] Length = 642 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 226/367 (61%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F LGL+ ++ A+ D G+ P+ +Q K IP++L+++ D+ +AQTGTGKTA+F P++ Sbjct: 4 FEQLGLNESLLLAIKDLGFENPSEVQEKAIPVLLEQNTDLVALAQTGTGKTAAFGFPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ A R + LIL PTREL Q+ + + Y K L + GG Q ++++ Sbjct: 64 KID---AENRNTQALILSPTRELCLQITNEIKLYSKYIKGLHTVAVYGGASITEQAREVK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGR+ D NRG + + NI+ ++DEAD ML+MGF I +I S P + T Sbjct: 121 RGAQIIVATPGRMQDMINRGLVNIKNIDFCILDEADEMLNMGFYEDICSILSDTPDEKNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ ++++ F+ +P I V + +S + T+ H + A+ + L++L Sbjct: 181 WLFSATMPAEVARIAKQFMSSPVEITVGSKNSGSATVSHEYYCVNAR--DRYEALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + ++FC K++ + L + G++ A+HG++ Q R ++ +F+ IQ++V Sbjct: 239 ANPDIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+ +P+ E Y HR GRTGRAG+ G + ++ K +++ I +I Sbjct: 298 ATDVAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIITKSELRKISSI 357 Query: 361 EKLIEKK 367 E++I++K Sbjct: 358 ERIIQQK 364 >gi|260941344|ref|XP_002614838.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720] gi|238851261|gb|EEQ40725.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720] Length = 748 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 143/385 (37%), Positives = 223/385 (57%), Gaps = 17/385 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L+ V+ + GY KP+PIQ +IP+ L D+ A TG+GKTA++++P++ Sbjct: 238 FQSLDLARPVLKGLASLGYTKPSPIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIER 297 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L ++V R +IL PTRELA QV D +K G+ N LT L +GG+ Q ++L+ Sbjct: 298 LLYKSSKVASTRVVILTPTRELAIQVCDVGKKIGRYVNNLTFGLAVGGLNLRQQEQQLKT 357 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQ 179 D+++ TPGR++DH N ++ +EILV+DEADRML+ GF + I +L+P RQ Sbjct: 358 RPDIVVATPGRLIDHIRNSASFSLDALEILVMDEADRMLEEGFQVELTEILTLIPKHKRQ 417 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM ++Q + + L P RI ++ P + A + FV + K ALL LL Sbjct: 418 TMLFSATMNTKIQDLIQLSLNKPVRIMIDPPKAAANKLVQEFVRIRKKDEMKPALLYYLL 477 Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +S D + ++F ++K+ L L G V +HG++ Q R+ +++FK T+ Sbjct: 478 KSVDPSQQSRIVVFVSRKETAHRLRIILGLLGMKVSELHGSLTQEQRLNNVNDFKNLTVP 537 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV-------- 349 +++ +DLAARGLDIP + V N+D+P E Y+HR+GRT RAGR G++ T V Sbjct: 538 VLICTDLAARGLDIPKIEMVINYDMPKSHEIYLHRVGRTARAGREGRSITFVGEAAADRN 597 Query: 350 ----AKEDIKHIDAIEKLIEKKVDW 370 A + ++ + +K + + VDW Sbjct: 598 IVKAAMKSLEESQSQQKAVSRNVDW 622 >gi|224052974|ref|XP_002297644.1| predicted protein [Populus trichocarpa] gi|222844902|gb|EEE82449.1| predicted protein [Populus trichocarpa] Length = 574 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 217/386 (56%), Gaps = 26/386 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP+ L D+ AQTG+GKTA+F P+++ Sbjct: 123 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLTGRDLMACAQTGSGKTAAFCFPIISG 182 Query: 63 LEKGR----------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 + K + AR P LIL PTREL+ Q+ + +K+ + V + GG P Sbjct: 183 IMKMQDQSAQRPLRGARTVYPLALILSPTRELSMQIHEEAKKFSYQTGVKVVVAYGGAPI 242 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q ++LERG D+L+ TPGR++D R ++ + I+ L +DEADRMLDMGF P I+ I Sbjct: 243 HQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVE 302 Query: 173 LV----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228 + P +RQT+LFSAT E+Q+++ +FL + + V S+ + I + Q Sbjct: 303 QMDMPPPGSRQTMLFSATFPKEIQRLASDFLASYVFLAVGRVGSSTDLIAQ--RVEFVQE 360 Query: 229 SKKCALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 S K + L LL +Q NG+ +F KK +L H L F +IHG+ Sbjct: 361 SDKRSHLMDLLYAQ--RANGVQGKQDLTLVFVETKKGADSLEHWLCINNFPATSIHGDRS 418 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q+ R + L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG Sbjct: 419 QQEREQALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAG 478 Query: 341 RHGKAFTLVAKEDIKHIDAIEKLIEK 366 + G A + + + +L+++ Sbjct: 479 KSGLATAFFNEGNASMARPLSELMQE 504 >gi|317495876|ref|ZP_07954239.1| DEAD/DEAH box helicase [Gemella moribillum M424] gi|316914053|gb|EFV35536.1| DEAD/DEAH box helicase [Gemella moribillum M424] Length = 485 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 138/359 (38%), Positives = 216/359 (60%), Gaps = 7/359 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+S K+V ++ + +V PT IQ +TIP VL D+ AQTG+GKT +F +P++ Sbjct: 4 FEELGVSSKIVESLTNMNFVSPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPIVDT 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + K ++LIL PTRELA QV + + L V+++ GG E Q + L++ Sbjct: 64 VRKTEEL----QSLILAPTRELAQQVGEQLRLMSRVKGLKVSIIFGGTSIERQIQDLKKR 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH NR + + + LV+DEAD ML+MGFI ++ I S + QTLL Sbjct: 120 PQIIVGTPGRVIDHINRKTIRLETLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTLL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++S++F+++ K ++ + I AT A+ ++K L L Q Sbjct: 180 FSATMPKTIMELSKDFMKDYKLVKTMSDEDLNPDITEF--ATIARENEKLETLIGFLDVQ 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G+ +HG+I Q R++IL FK ++Q++VA+ Sbjct: 238 NP-NLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 D+AARG+DI DV HV+NFD+P E+Y HRIGRTGRAG+ G A T + ++ ++ IE Sbjct: 297 DVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEMPYLKDIE 355 >gi|256831947|ref|YP_003160674.1| DEAD/DEAH box helicase domain-containing protein [Jonesia denitrificans DSM 20603] gi|256685478|gb|ACV08371.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM 20603] Length = 544 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 211/370 (57%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD L +V A+ AG V P PIQ T+P+ L HD+ G A+TGTGKT F LP+L Sbjct: 25 FADFPLRSDIVAALASAGIVSPFPIQSLTLPVALSGHDIIGQAKTGTGKTLGFGLPLLNR 84 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E+G ++ P + +++ PTRELA QVA + E ++ + L GG +E Q Sbjct: 85 VVAPGEEGFDQLPAPGKPQAVVIVPTRELAVQVAKDLELASSTRSVRIVQLYGGRAYEPQ 144 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L RG +V++ TPGR++D + L + ++V+DEAD MLD+GF+P ++ I + P Sbjct: 145 IAALNRGVEVVVGTPGRMIDMLKQKHLTLLRAGVIVLDEADEMLDLGFLPDVEKILAQTP 204 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCAL 234 RQ +LFSATM + ++ ++ P I P T+++ Y A K + Sbjct: 205 AVRQMMLFSATMPGAVVAMARRYMNQPTHIRAQDPEDLGSTVKNITQVVYRAHPLDKVEM 264 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + +IF K+N + L ++GF+ A+HG++ Q +R + L F+ G Sbjct: 265 IARILQARGRGLS-VIFTRTKRNAAKVADELTERGFAAGALHGDLGQGAREQALRAFRNG 323 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ +V HV N+ VP + Y+HR GRTGRAG G A T V ED+ Sbjct: 324 KVDVLVATDVAARGIDVENVTHVINYQVPEDDKVYLHRTGRTGRAGNKGTAVTFVDWEDL 383 Query: 355 KHIDAIEKLI 364 I K + Sbjct: 384 HTWTLINKAL 393 >gi|157693344|ref|YP_001487806.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus SAFR-032] gi|157682102|gb|ABV63246.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus SAFR-032] Length = 480 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 204/339 (60%), Gaps = 6/339 (1%) Query: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83 PTP+Q +T+ + + D+ +QTG+GKTA++ LP+ +++ + P+ LIL PTRE Sbjct: 27 PTPVQHETLSVAFSKQDLIVKSQTGSGKTAAYGLPICEMVDWAENK---PQALILVPTRE 83 Query: 84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143 LA QV + G+ + A + G PF+AQ +L + ++ TPGR+LDH +G L Sbjct: 84 LAMQVKQDLTSLGRLKRIKAAAIFGKAPFQAQKIELAQKNHIVCGTPGRVLDHLEKGTLS 143 Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203 + N++ V+DEAD ML+MGFI + +I +P R ++LFSATM+DE++K+SE FLQ+PK Sbjct: 144 LENLKFFVLDEADEMLNMGFIDQVSSIIQYLPPKRMSMLFSATMSDEMKKLSEQFLQSPK 203 Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263 IE+ ++ I H + T + K +LLQ+ + ++ + IIFCN + V L Sbjct: 204 VIEIAREETSVPQITHTVIET--EEEAKFSLLQRTIVIENP-DSCIIFCNTQDRVNELTM 260 Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323 L++ IHG + Q R ++ FK G + ++A+D+AARG+D+ D+ HV ++D+P Sbjct: 261 KLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGIDVSDMTHVIHYDLP 320 Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 E YIHR GRTGRAG+ GK + + ID +++ Sbjct: 321 YEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDELKE 359 >gi|91214661|ref|ZP_01251634.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC 700755] gi|91187088|gb|EAS73458.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC 700755] Length = 586 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 228/369 (61%), Gaps = 12/369 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F LGLSP+++ A+ D G+ P+ +Q +TIP++L+ D+ +AQTGTGKTA+F P++ Sbjct: 4 FESLGLSPEILRAIEDLGFESPSEVQEQTIPVLLEESTDMVALAQTGTGKTAAFGFPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + LIL PTREL Q+ + ++Y K Y NL+ + GG Q ++++ Sbjct: 64 NIDLNSKKTQ---GLILSPTRELCMQITNELKQYSKYYQNLSTVAVYGGASITDQARQIK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA +++ TPGR+ D R + ++NI I ++DEAD ML+MGF I+ I S + T Sbjct: 121 KGAQIIVATPGRMKDMIQRNIIDISNISICILDEADEMLNMGFFEDIKEILSHSSDQKNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 LFSATM E+ +++ F++NPK I V + + +++ H + V +YS A+ + + Sbjct: 181 WLFSATMPKEVSIIAKKFMKNPKEITVGQKNISTKSVSHEYFIVGGRDRYS---AVKRVV 237 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + D ++FC K++ + L + G+S A+HG++ Q R ++++F+ IQ+ Sbjct: 238 DANPDIY--AVVFCRTKRDAQKVAEKLIEDGYSASALHGDLSQAQRDMVMNSFRRKQIQM 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ D+ HV N+ +P+ E Y HR GRTGRAG+ GK+ +V K +++ I Sbjct: 296 LVATDVAARGIDVDDITHVINYQLPDEIEIYTHRSGRTGRAGKEGKSLVIVTKSEVRKIK 355 Query: 359 AIEKLIEKK 367 +E++I +K Sbjct: 356 QVERMIGQK 364 >gi|320157377|ref|YP_004189756.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O] gi|319932689|gb|ADV87553.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O] Length = 408 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 215/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P ++ A+ + GY +PT IQ + IP L+ D+ A TGTGKTA+FVLP L Sbjct: 5 FADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA QVAD KN +L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR++++ + IE L++DEADRMLDMGF P + +++ + +QT+ Sbjct: 125 TQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTM 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ + ++ + + L +P I+ + I + + K ALL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADS-MEHKLALLKDIIN 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +Q + I+F ++ + +L LE + + I G + Q R ++ F++G++ +++ Sbjct: 244 NQ--AERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PDV HV NFD+P A+ Y+HRIGRT RAG+ G A ++V D +D + Sbjct: 302 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361 Query: 361 EKLIEKKV 368 + +++ + Sbjct: 362 ARYVKEDI 369 >gi|299533009|ref|ZP_07046396.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44] gi|298719233|gb|EFI60203.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44] Length = 469 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 210/363 (57%), Gaps = 10/363 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LSP+++ + GY + TPIQ ++PL LQ D+ A TG+GKTA+F LPM+ Sbjct: 16 FSALPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDR 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + L+L PTRELA QVA + + N+ V + GG+P Q LE Sbjct: 76 LNP---RWFAVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLEN 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++D RGKL + N++ LV+DEADRMLDMGF+ I+ + P RQTL Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTL 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLLQ 240 LFSAT D + ++ F+++P+ ++V T S + + + V + LL Sbjct: 193 LFSATYPDGIASLASRFMRDPQTVKVATQHSAGKIAQRWYEVGARDKVDTVAKLLAHFRP 252 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I FCN K+ ++ L+ QGFS A+ G ++QR R ++L F + ++V Sbjct: 253 -----ESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLV 307 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI D+ V N DV E +IHRIGRTGR G A LV+ +++ + I Sbjct: 308 ATDVAARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKI 367 Query: 361 EKL 363 E+L Sbjct: 368 EQL 370 >gi|94500946|ref|ZP_01307471.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65] gi|94426886|gb|EAT11869.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65] Length = 466 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 151/396 (38%), Positives = 224/396 (56%), Gaps = 24/396 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P ++ + D GY + PIQ +++P +++ DV G A+TG+GKTA+F L +L Sbjct: 10 FSSLKLDPALLQNLEDLGYQQMRPIQAQSLPAIIEGKDVIGQAKTGSGKTAAFALGLLHH 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ R RV+ L+L PTRELA QVA + + +N+ V L GG+PF Q LE Sbjct: 70 LDVKRFRVQH---LVLCPTRELADQVAKEIRQLARAIHNIKVLTLCGGMPFGPQVGSLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI +H + L + +I V+DEADRMLDMGF +++I + +P RQTL Sbjct: 127 GAHIVVGTPGRIEEHIRKNNLPLKDITGFVLDEADRMLDMGFQDSLESIVNALPKQRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + ++K++ P R+EV S I+ F + AL LL Sbjct: 187 LFSATYPENIEKLAAWVTNKPVRVEVQE-SDVHSQIKQLFYRLQDNKQRMTAL--SLLLK 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ ++ I+FCN K+ + L QGFS A+HG+++QR R + L F + +MVA Sbjct: 244 KEKPESSIVFCNTKREAQEIADELRSQGFSAVALHGDLEQRQRDQTLVRFANKSASIMVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT---------LVAKE 352 +D+AARGLDI V VFN+ + E ++HR+GRTGR + GKAF+ LVA E Sbjct: 304 TDVAARGLDIESVDAVFNYHLARDPEVHVHRVGRTGRGDKKGKAFSFYTDKEGYKLVALE 363 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 + +DA + + D S L+ P K +A Sbjct: 364 ETLSVDATAQKLP--------DFSVLDKPAFKAPMA 391 >gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565] gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565] Length = 407 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L P + A+ + G+ +PT IQ + L D+ A TGTGKTASF+LP L Sbjct: 5 FDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTASFLLPALQH 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QV + + + NL++ +IGG+ E Q L + Sbjct: 65 LLDFPRRKPGPCRMLILTPTRELALQVTAHAKALAAHTNLSIETIIGGVSHEEQLPALTK 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + ++IE+LV+DEADRMLDMGFI + I + + + T+ Sbjct: 125 TTDIVVATPGRLLEYIEKEEFESHDIEVLVLDEADRMLDMGFIKDVNRIVAEARYRKHTM 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ L+K + L++P + P S I ++ + K ALL +L+ Sbjct: 185 LFSATLEGAGLEKFANEILKDPVELHAEPPRSERRPITQ-WIHLADDAAHKLALLTHILK 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +T K IIF ++ + L L+ G S I G ++Q R++ + F EG + ++ Sbjct: 244 DPETQK-AIIFVKTRERLAELSGQLQAAGISCAWIRGEMEQSKRIESIRKFHEGEVPFLI 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P+V HV N+D+P A+ Y+HRIGRTGRAG G A +LV D+ + I Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAKI 362 Query: 361 EKLIEKKV 368 E+ E+++ Sbjct: 363 ERYTEERL 370 >gi|251778643|ref|ZP_04821563.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082958|gb|EES48848.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 480 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 220/371 (59%), Gaps = 6/371 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LS +++ A+ + GY P+ +Q K IP VL+ D+ +QTG+GKTASF +P+ Sbjct: 4 EFNKFELSGELLKAIDNLGYKTPSEVQEKAIPEVLRNKDLVVKSQTGSGKTASFGIPLCE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L+L PTRELA Q++++ G+ + + G Q +KL++ Sbjct: 64 KIDWDENK---PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR+LDH +RG L ++ I VIDEAD ML+MGFI ++ I +P R TL Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ DE++ + + + P I + + + T++ + H A + Y++K L +L S Sbjct: 181 LFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSH--YAYHVGYNQKLDSLNNILIS 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++FC K+NV + L K+G+S IHG + Q+ R+ + F+ G +++VA Sbjct: 239 E-MPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RG+DI + HV N+D+P E Y+HRIGRTGRAG G A T ++++ IE Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIE 357 Query: 362 KLIEKKVDWLN 372 + I K++ N Sbjct: 358 EYIGFKLEVKN 368 >gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82] Length = 498 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 136/361 (37%), Positives = 205/361 (56%), Gaps = 10/361 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +G ++ ++ G+ PTPIQ + P+ L DV IAQTG+GKT SF LP + Sbjct: 61 VSFDQVGFPEYLMSSIRAQGFDAPTPIQCQAWPMALTGRDVVAIAQTGSGKTISFALPAM 120 Query: 61 ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L G P L+L PTRELA Q+ K+G N + + GG P Sbjct: 121 LHINAQPLLAPGDG----PIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGP 176 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L+RG +++I TPGR++D K + + LV+DEADRMLDMGF P I+ I S + Sbjct: 177 QIRDLQRGVEIVIATPGRLIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQI 236 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT ++QK++ +FL++ ++ + + TA V + + K+ L Sbjct: 237 RPDRQTLMFSATWPKDVQKLANDFLRDMIQVNIGSMELTANHNIQQIVEVCSDFEKRNKL 296 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ L Q +IF K+ ++ L + G+ AIHG+ +QR R +L FK G Sbjct: 297 IKHLDQISAENAKVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAG 356 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +++A+D+A+RGLD+ DVG+V N+D PN E+YIHRIGRTGRAG G ++T ++ Sbjct: 357 RSPILIATDVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKGISYTYFTTDNA 416 Query: 355 K 355 K Sbjct: 417 K 417 >gi|312130721|ref|YP_003998061.1| dead/deah box helicase domain protein [Leadbetterella byssophila DSM 17132] gi|311907267|gb|ADQ17708.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila DSM 17132] Length = 400 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 153/373 (41%), Positives = 218/373 (58%), Gaps = 11/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L P V + Y TPIQ IPLVL++ D+ AQTGTGKTA+F++P+L Sbjct: 1 MKFEELNLHPDVKNGIEAMNYQDTTPIQEMAIPLVLEKKDLLACAQTGTGKTAAFLIPIL 60 Query: 61 TIL-EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE---AQN 116 +++ E+G ++ TLIL PTRELA Q+ + E G +T + GG E Q Sbjct: 61 SLIREEGGDQLS---TLILVPTRELAKQIDEQVEGLGYFVGVTSLAIYGGGKGENWGQQR 117 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L GAD++I TPGR+L H GK+ + I+ LV+DEAD+MLDMGF I I +P Sbjct: 118 TALIEGADIIIATPGRLLAHMQSGKIKFDTIKRLVLDEADKMLDMGFSDDINFIIKHLPK 177 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL+FSATM +++ + N L+NPK I ++ S AE I+ F A +K ALL Sbjct: 178 ERQTLMFSATMPPKIRTFARNILKNPKEISLSV-SKPAEKIDQRFY--MAADEQKLALLN 234 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL + K IIF +Q+ + + L + + +I+Q R L +FK G Sbjct: 235 HLLSPFEGQKI-IIFTSQRSMIHKILKDLSRNKLKAKGVSSDIEQDEREVALRDFKAGKF 293 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ +RG+DI ++ V NFDVP AE+YIHRIGRT RA G + T + ++D K Sbjct: 294 NILVATDVLSRGIDISNLNLVVNFDVPRDAEDYIHRIGRTARADTEGVSITFLTEKDRKA 353 Query: 357 IDAIEKLIEKKVD 369 + IE L+EK+V+ Sbjct: 354 VKDIEALLEKEVE 366 >gi|302341638|ref|YP_003806167.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM 2075] gi|301638251|gb|ADK83573.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM 2075] Length = 490 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 217/381 (56%), Gaps = 6/381 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FAD L ++ + D+GY TPIQ +TIPL L DV G AQTGTGKTA+F++P+ Sbjct: 26 FADFNLPEPLLRGLADSGYTHCTPIQERTIPLGLAGKDVAGEAQTGTGKTAAFLVPIFYH 85 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L R + P LI+ PTRELA Q+ D+ ++ G++ +L + + GG+ + Q + L Sbjct: 86 MLRDQRTDRQFPAALIIAPTRELAVQIYDDAQQIGRHTDLRMVAVFGGVDYLKQARALRE 145 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--RQ 179 G D+++ TPGR +D+ + L + ++ LVIDEADR+ DMGFI ++ I +P RQ Sbjct: 146 GVDIVVATPGRAIDYIKQRALDLRAVKHLVIDEADRLFDMGFIADLRWIMRRLPPYDRRQ 205 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 ++LFSAT+ + +++ F+ P ++ V T E ++ A L Sbjct: 206 SMLFSATLGYRVLELTYEFMNMPAKVSVAPRQRTVEQVDQELYHCSAPEKMSLLLGLLRR 265 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + +IF N K+ V + + L G I G++ QR RM++L FK G ++++ Sbjct: 266 EGVDRV---MIFANTKRAVDAIAYKLRGNGLPAEGISGDLTQRRRMQLLEQFKSGELKIL 322 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+++AARGL + ++ HV N+DVP E+Y+HRIGRT RAG GKA TL H+ Sbjct: 323 VATNVAARGLHVENISHVINYDVPADPEDYVHRIGRTARAGAVGKAITLCCDRYATHLPY 382 Query: 360 IEKLIEKKVDWLNGDLSSLNP 380 +E+ + +K+ D S P Sbjct: 383 VEEYLGEKIPVCWADDSLFVP 403 >gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767] gi|74659385|sp|Q6BTL5|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1 gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii] Length = 771 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 150/389 (38%), Positives = 224/389 (57%), Gaps = 21/389 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS V+ + GY KP+PIQ IP+ L D+ A TG+GKTA++++P++ Sbjct: 260 FQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIER 319 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L A++ R ++L PTRELA QV D +K G+ N L L +GG+ Q ++L+ Sbjct: 320 LLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKT 379 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTRQ 179 D++I TPGR++DH N ++++E+LVIDEADRMLD GF + I SL+P RQ Sbjct: 380 RPDIVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEILSLIPRHKRQ 439 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLL+SATM ++Q + + LQ P R+ ++ P S A + FV + K ALL QL+ Sbjct: 440 TLLYSATMNTKIQDLIQLSLQKPVRVMIDPPKSAAIKLVQEFVRIRKRDHLKPALLFQLI 499 Query: 240 QSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +S D + ++F +K++ L L G V +HG++ Q R+ +++FK T+ Sbjct: 500 KSVDPSQQNRIVVFVARKESAHKLRIILGLLGMRVSELHGSLTQEQRLASVNDFKNLTVP 559 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA------- 350 +++ +DLAARGLDIP + V N+D+P E Y+HR+GRT RAGR GK+ T V Sbjct: 560 VLICTDLAARGLDIPKIEIVINYDMPKTHEIYLHRVGRTARAGREGKSITFVGESTQDRA 619 Query: 351 --KEDIKHIDAIE-------KLIEKKVDW 370 K+ IK I + K + + VDW Sbjct: 620 IVKDAIKSISEEQARNSKQGKAVSRNVDW 648 >gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546] gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546] Length = 411 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 212/369 (57%), Gaps = 5/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FA+L L P ++ A+ + GY +PT IQ + IP L DV A TGTGKTA+F LP L Sbjct: 4 NFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFALPALQ 63 Query: 62 ILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ R P R LIL PTRELA QVAD K+ NL + + GG+ ++ L Sbjct: 64 FLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKHTNLNIFTITGGVQYQEHADILA 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D+++ TPGR++++ + IE L++DEADRMLDMGF P + ++S + +QT Sbjct: 124 TTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQT 183 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ + ++ + + L++P I+ + I + + K LL+++L Sbjct: 184 LLFSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWY-HRADDMTHKLELLKKIL 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F ++ + L LEK I G + Q R ++ F++GT+ ++ Sbjct: 243 TEQ--AERSIVFLKTRERLAELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A +LV D ID Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMIDR 360 Query: 360 IEKLIEKKV 368 + + +++ + Sbjct: 361 VARYVKEDI 369 >gi|228473039|ref|ZP_04057796.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga gingivalis ATCC 33624] gi|228275621|gb|EEK14398.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga gingivalis ATCC 33624] Length = 588 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 222/371 (59%), Gaps = 10/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F LGLS ++ A+ D G+ +P+ +Q IP++L+ D+ +AQTGTGKTA+F P+L Sbjct: 11 FKTLGLSAPLLEAIDDLGFERPSEVQQAAIPVLLEAPTDMVALAQTGTGKTAAFGFPLLQ 70 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +++ + RM + LIL PTREL Q+A ++Y K + + + GG E Q + L+ Sbjct: 71 LIDPTQ---RMTQGLILAPTRELCLQIASELKQYAKYMPQVHIVAIYGGASIEEQARSLK 127 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA +++ TPGR+ D R + I V+DEAD ML+MGF I++I S P + T Sbjct: 128 KGAHIIVATPGRMQDMMRREFTSIAQISYCVLDEADEMLNMGFYEDIRSILSETPDDKNT 187 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLL 239 LFSATM E+ K+++ F+ +PK I + + + + H C++ Q + L++L Sbjct: 188 WLFSATMPAEVAKIAKEFMHHPKEITIGHKNQASNNVLHECYIVNGRQ---RYEALKRLA 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ + ++FC K++ + L + G++ A+HG++ Q R ++ F+ IQ++ Sbjct: 245 DANPSIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQML 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ D+ HV ++ +P+ E Y HR GRTGRAG+ G + ++ K + K I Sbjct: 304 VATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSEAKRIKT 363 Query: 360 IEKLIEKKVDW 370 IEK+I+K ++ Sbjct: 364 IEKIIQKTFEY 374 >gi|62898149|dbj|BAD97014.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 variant [Homo sapiens] Length = 483 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP++L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPVILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P ST E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q QD ++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 IQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I+KK++ + + + + L ++++ R+ I ++ FD +K+ Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409 >gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586] gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586] Length = 416 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 214/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADL L P ++ A+ + G+ +PT +Q + IP L DV A TGTGKTA+F +P L Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQY 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QVA+ + KN L + + GG+ ++ L Sbjct: 65 LLDFPRRKPGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++ + + L++P ++ P + I + K LL+++L Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F ++ + +L LEK I G + Q R +S F+EG + +++ Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV D + + Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361 Query: 361 EKLIEKKV 368 E+ I+++V Sbjct: 362 ERYIKEEV 369 >gi|170694034|ref|ZP_02885190.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] gi|170141106|gb|EDT09278.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] Length = 467 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 146/394 (37%), Positives = 215/394 (54%), Gaps = 18/394 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L + + GYV+ TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 11 FSQLPLPAATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ V+ ++L PTRELA QV + + N+ V L GG P Q LE Sbjct: 71 LDTRNFAVQ---AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEH 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 128 GAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTL 187 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ FL+NPK +++ + + + T + LL + Sbjct: 188 LFSATYPEGIVKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K+ +L L QGF A+HG +DQR R ++L F + ++VA Sbjct: 248 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + ++ + +E Sbjct: 304 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGLE 363 Query: 362 KLIEKKVDWLNGDLSSLN--------PPLEKIDI 387 + ++ V+W LS L PP+E + I Sbjct: 364 QAHKRDVEW--HKLSELTPKSNEPLLPPMETLQI 395 >gi|297817166|ref|XP_002876466.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp. lyrata] gi|297322304|gb|EFH52725.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp. lyrata] Length = 608 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 143/386 (37%), Positives = 216/386 (55%), Gaps = 17/386 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD+ L + + YV+PTP+Q IP++L + D+ AQTG+GKTA+F P+++ Sbjct: 151 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLGQRDLMACAQTGSGKTAAFCFPIISG 210 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + K + +R P +IL PTRELA Q+ D +K+ + V + GG P Q Sbjct: 211 IMKDQHVQRPRGSRTVYPLAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPINQQ 270 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG D+L+ TPGR+ D R ++ M I+ L +DEADRMLDMGF P I+ I + Sbjct: 271 LRELERGVDILVATPGRLNDLLERARVSMQRIKFLALDEADRMLDMGFEPQIRKIVEQMD 330 Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYS 229 RQT+LFSAT E+Q+++ +F+ N + V S+ + I FV + S Sbjct: 331 MPPRGERQTMLFSATFPREIQRLAADFMSNYIFLAVGRVGSSTDLITQRIEFVQESDKRS 390 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 LL ++QD ++F K+ L + L F +IHG+ Q+ R L Sbjct: 391 HLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALR 450 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G A Sbjct: 451 SFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 510 Query: 350 AKEDIKHIDAIEKLIEKK----VDWL 371 + + + + +L+++ +WL Sbjct: 511 NENNAQMARLLAELMQEANQEVPEWL 536 >gi|299135820|ref|ZP_07029004.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8] gi|298601944|gb|EFI58098.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8] Length = 490 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 216/381 (56%), Gaps = 17/381 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD +S + + AG+V PTP+Q IP L+ D+ A TGTGKT SF++PM+ Sbjct: 32 FADFDISQPLKDRLAAAGFVTPTPVQAGAIPPALEGDDILATASTGTGKTLSFLIPMIDR 91 Query: 63 LEKGRARVRMPRT---------LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 LE+ + P T LIL PTRELA QV D++ K L+ GG+ Sbjct: 92 LEE----ISKPSTRGAKNPILALILLPTRELAMQVLDSYFKICPTLKSDAVLVCGGLSEN 147 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q ++L RG +++ TPGR+ D R + + ++++LV+DE DRMLDMGF+P I+ I Sbjct: 148 TQLEQLSRGPRLVVATPGRLEDFLRRRSVSLKDVDMLVLDEVDRMLDMGFLPAIKRIVQA 207 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQT+ +SAT+ ++++ +++ NP RIE+ T S ++ +E V T Q +K A Sbjct: 208 LPKDRQTMCYSATLDASIREIVRDYVNNPVRIEIGTTSKPSDRVE-LRVYTVMQ-DQKLA 265 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L ++L+ ++ ++F K + LEK G IHG+ Q R L NF Sbjct: 266 QLDKMLKEEEGTY--LVFSRTKHGADRIAKKLEKAGHLTEVIHGDRSQSQRTAALRNFTM 323 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++VA+D+AARG+D+ + HV N+D+PN +++++HRIGRTGRAG G A T V + Sbjct: 324 GKARILVATDVAARGIDVSHIAHVVNYDLPNGSDDFVHRIGRTGRAGAKGVATTFVTPLE 383 Query: 354 IKHIDAIEKLIEKKVDWLNGD 374 +E+ ++ K W D Sbjct: 384 KGDARKLERELKIKFQWHEAD 404 >gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans JEC21] gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var. neoformans B-3501A] gi|74683279|sp|Q5KBE2|RRP3_CRYNE RecName: Full=ATP-dependent rRNA helicase RRP3 gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 484 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 221/376 (58%), Gaps = 13/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+SP++ A G+ KP+ IQ + IP L+ D+ G+AQTG+GKTA+F LP+L Sbjct: 40 FADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQT 99 Query: 63 LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + P+ L+L PTRELA Q++ G + A+L+GG+ +Q+ L Sbjct: 100 LWEN------PQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIAL 153 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR++DH K + +++ LV+DEADR+LD+ F P I I ++P R Sbjct: 154 SKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKER 213 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATMT ++ K+ L P R+EV++ ST T+ ++ + +K LL Sbjct: 214 NTYLFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLK-NKDAYLL--Y 270 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ + + +IF + L L + GF +HG + Q R+ L+ FK G + Sbjct: 271 LANELSSSSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSI 330 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGLDIP V V N+D+P +++Y+HR+GRT RAGR GK+ TLV + D++ + Sbjct: 331 LVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQ 390 Query: 359 AIEKLIEKKVDWLNGD 374 IE I KK+ + D Sbjct: 391 RIESHIGKKMTSFDVD 406 >gi|24373075|ref|NP_717118.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24347255|gb|AAN54562.1|AE015596_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 456 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 220/368 (59%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ A+ + GY + T +Q + IPL L D+ AQTGTGKTA+F LP+L Sbjct: 1 MKFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L A + R L++ PTRELA QV N +KY + L + GG Q K +E Sbjct: 61 EQLAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+L+ TPGR+ D + L ++++ LVIDEADRMLD+GF+ I+ + L+ QT Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT +D ++++S L P+ + V ++TA T+E + +K LL +L+ Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPQWVNV-AENTTASTVEQ--LVYRVDKRRKAELLSELV- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F + K+ +L L G S HG+ Q +R ++L +FK G ++++V Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N ++P AE+Y+HRIGRTGRAG G+A + V+ D + + I Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356 Query: 361 EKLIEKKV 368 E LI +K+ Sbjct: 357 EALIGEKL 364 >gi|120610252|ref|YP_969930.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax citrulli AAC00-1] gi|120588716|gb|ABM32156.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1] Length = 446 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 152/424 (35%), Positives = 227/424 (53%), Gaps = 15/424 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASF----V 56 M FA LGLSP +V A G+ PTPIQ + IP VL DV G AQTG+GKTA+F + Sbjct: 1 MPFAALGLSPALVHAAGALGFDTPTPIQAQAIPAVLDGGDVLGRAQTGSGKTAAFGLPLL 60 Query: 57 LPMLTILEKGRARV--RMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIP 111 +L ++ AR R P L+L PTRELAAQV + + + L +A+ GG+ Sbjct: 61 QRLLPQAQQAGARPGPRRPGALVLVPTRELAAQVGEVLRDLAGHLPGPRLKIAIACGGVS 120 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 Q L GAD ++ TPGR+LD L ++ + LV+DEADR+LD+GF +Q + Sbjct: 121 INPQLMALRGGADAVVATPGRLLDLVEHNALSLSQVRALVLDEADRLLDLGFAEELQRVL 180 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 +L+P RQ LLFSAT + +++E L++P RIE+ TA I +A A ++ Sbjct: 181 ALLPAQRQNLLFSATFEPGVARLAEGLLRDPLRIEIAGAPGTAPDIAQRAIAVEA--PRR 238 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL+QLL + ++F + ++ L + G HG + Q +R ++L F Sbjct: 239 TQLLKQLLTQEPGWTRVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEF 298 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 ++ Q++V +DLAARG+DI + V N+D+P A +Y+HRIGRTGRAG G A + V Sbjct: 299 RDERWQVLVTTDLAARGIDIAGLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTP 358 Query: 352 EDIKHIDAIEK---LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408 E H + + L V+ + G +L P ++ + AR +P + G Sbjct: 359 EAAPHWRLLARRHGLQALPVEQVAGFEVALAPAAQETGATEDAPARPGK-LPPGTGGIKG 417 Query: 409 RKKN 412 R+ + Sbjct: 418 RRPS 421 >gi|120435454|ref|YP_861140.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella forsetii KT0803] gi|117577604|emb|CAL66073.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella forsetii KT0803] Length = 597 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 223/371 (60%), Gaps = 12/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F LGL ++ A+ D G+ P+ +Q K+IP++L++ D+ +AQTGTGKTA+F P++ Sbjct: 4 FQKLGLDADLLKAIEDMGFETPSEVQEKSIPILLEKETDLVSLAQTGTGKTAAFGFPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +K A + + LIL PTREL Q+ + N+ KY K+ N V + GG Q + Sbjct: 63 --QKIDANSKKTQALILSPTRELCLQITNEIKNYSKYKKSLN--VVAVYGGASITDQARS 118 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 +ERGA +++ TPGR+ D R +++I V+DEAD ML+MGF I+ I S P + Sbjct: 119 IERGAQIIVATPGRMQDMIRRRLANISSIGYCVLDEADEMLNMGFYEDIKTILSHTPKEK 178 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +T LFSATM E+ K+++ F+ +P I V + + + H + + + L++L Sbjct: 179 KTWLFSATMPKEVAKIAKKFMTDPIEITVGSKNKGTSNVSHEYY--LVNHRNRYDALKRL 236 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + +IFC K++ + L + G++ A+HG++ Q R ++ +F+ IQ+ Sbjct: 237 ADANPEIFS-VIFCRTKRDTQKVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRSRQIQM 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ D+ HV N+ +P+ E Y HR GRTGRAG+ G + +++K +++ I Sbjct: 296 LVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKQGVSMVIISKSEVRKIR 355 Query: 359 AIEKLIEKKVD 369 +EK+I++K + Sbjct: 356 TVEKIIQQKFE 366 >gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 422 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 217/370 (58%), Gaps = 11/370 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L LS ++ + + +PTPIQ I L D+ AQTGTGKT +F+LP + Sbjct: 3 NFSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPTIQ 62 Query: 62 ILEKGRARVRMP--RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L R P R LIL PTRELA Q+ + + + + A+ +GG+ +Q + + Sbjct: 63 LLS---TEPRQPGVRALILTPTRELALQINEALLQIARGTGIRAAVAVGGLNERSQLRDI 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA++++ TPGR+ D +RG + + + +L++DE+DRMLDMGF+P I+ I + +P RQ Sbjct: 120 RGGANIVVATPGRLYDFMSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAERQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQL 238 TLLFSAT+ ++++ E ++N RIE+ + S +E ++ H + +K LL+ + Sbjct: 180 TLLFSATLESSVKQLVETHVRNAVRIELGSISKPSEQVDLHLY---EVDQDRKFGLLEMM 236 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + + ++F K L L + GF AIHG+ Q R++ L F+EG ++ Sbjct: 237 LREEQ--GSFLVFARTKHGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYYRV 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+ + + HV NFD+P E++IHR+GRTGRAG G A T + + I Sbjct: 295 LVATDVAARGIHVEGISHVVNFDLPQVPEDFIHRVGRTGRAGAKGTASTFATRSERSEIG 354 Query: 359 AIEKLIEKKV 368 IE+ + K+ Sbjct: 355 RIERTLSVKL 364 >gi|221195199|ref|ZP_03568255.1| dead/deah box helicase [Atopobium rimae ATCC 49626] gi|221185102|gb|EEE17493.1| dead/deah box helicase [Atopobium rimae ATCC 49626] Length = 457 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 154/436 (35%), Positives = 231/436 (52%), Gaps = 50/436 (11%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGL+ ++ V G+ PTPIQ IP VL DV AQTGTGKTA+FV P L + Sbjct: 5 FAELGLNEHILTGVETLGFNTPTPIQAAAIPAVLAGKDVVASAQTGTGKTAAFVFPALQV 64 Query: 63 LEKG-------RARVRM--------------------------------PRTLILEPTRE 83 ++ G R V+ P+ LI+ PTRE Sbjct: 65 IDTGFGDEKTDRPEVQCQPQDGQQQSSQQQESQRRRQRGGKRRRNRTRDPQALIVTPTRE 124 Query: 84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143 LA Q+ K+ ++ GG + Q ++ G D+L+ TPGR+LD ++ Sbjct: 125 LATQIERVATTICKSTGQRAVIITGGAKLKRQISAVQAGCDLLVATPGRLLDLIEHHQVN 184 Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203 + NI++ ++DEADRMLDMGF P ++ I +P RQTLLFSAT+ + +N L +P Sbjct: 185 LKNIKVFILDEADRMLDMGFWPSVRRIMDTLPPKRQTLLFSATLPPSIISTIDNMLHDPT 244 Query: 204 RIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQS-QDTMKNGIIFCNQKKNVVN 260 IE+ TA+T+E C V +K LL+ L++S + + ++FC K V + Sbjct: 245 MIEIARTGQTADTVEEHLCPVV----QGQKVELLESLIRSFRPAPERILVFCRTKLRVDS 300 Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320 + +L GF V +H + Q +R + L+ F+ GTIQ++VA+D+ +RG+D+ + V NF Sbjct: 301 VYAALNNAGFKVDVMHADRPQGARTRALTKFRNGTIQILVATDVMSRGIDVQGIDAVVNF 360 Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD-WLNGDLSSLN 379 DVP E+Y+HRIGRTGRAG G+AFT +A ++I + IE + + W DL + Sbjct: 361 DVPLDPEDYVHRIGRTGRAGSAGQAFTFMAPDEIAPLREIEYFTKSLISTW---DLPNFG 417 Query: 380 PPLEKIDIAQHNHARK 395 +I + Q+ A K Sbjct: 418 YQEGRIVLPQNRPATK 433 >gi|261250046|ref|ZP_05942623.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891] gi|260939550|gb|EEX95535.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891] Length = 433 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 155/423 (36%), Positives = 237/423 (56%), Gaps = 15/423 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P++ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E + + AL GG ++ Q K Sbjct: 71 LLTTSEHEGRKPNQPRAIIMAPTRELAIQIYNDAESLIASTGIKAALAYGGESYDKQLSK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G DVLI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LEDGVDVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELF--YPSNEHKMALLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ IIF N K ++ L G V + G++ Q+ R +IL F +G + Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESVWGYLAADGHRVGLLTGDVPQKKRERILEQFTKGDV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ + Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS-TGFDRRKKNYSS 415 + IE+ IE + + D S+L +E D+ R N P +++ TG R S+ Sbjct: 368 LPPIEEYIEHTIPVSDYDPSAL---IE--DLPAPIRMRSNRPQQRRTNTGGSRSGNRRSN 422 Query: 416 QKS 418 +S Sbjct: 423 HRS 425 >gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] Length = 609 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 153/406 (37%), Positives = 227/406 (55%), Gaps = 21/406 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LG+ ++V A+ +AG + IQ T+PL L DV G A+TGTGKT F +P+L Sbjct: 54 FTELGVREEIVRALGEAGIERAFAIQELTLPLALAGEDVIGQARTGTGKTLGFGIPLLQR 113 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ G P+ L++ PTREL QV + K+ ++ V + GG P+E Q L + Sbjct: 114 VITPGDG---TPQALVVVPTRELCLQVTHDLTDASKHMDVRVLAIYGGRPYEPQIAALRK 170 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR+LD + L++ + LV+DEAD MLD+GF+P I+ + +VP RQT+ Sbjct: 171 GVDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDERQTM 230 Query: 182 LFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM + ++ FL P R E N + E E +A K LL ++L Sbjct: 231 LFSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHAL--DKVELLARVL 288 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q++D + +IF K+ + + ++GF+V A+HG++ Q +R + L F+ G I ++ Sbjct: 289 QARDRGLS-MIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKIDVL 347 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ V HV N+ P + Y+HRIGRTGRAGR G A TLV ++I Sbjct: 348 VATDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWDEIPRWQM 407 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 I D LN L + P+E + H A IP STG Sbjct: 408 IS-------DALN--LGKRD-PVETYSTSDHLFAELG--IPAGSTG 441 >gi|161486658|ref|NP_933453.2| ATP-dependent RNA helicase SrmB [Vibrio vulnificus YJ016] Length = 408 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 215/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P ++ A+ + GY +PT IQ + IP L+ D+ A TGTGKTA+FVLP L Sbjct: 5 FADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA QVAD KN +L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR++++ + IE L++DEADRMLDMGF P + +++ + +QT+ Sbjct: 125 TQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTM 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ + ++ + + L +P I+ + I + + K ALL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADS-MEHKLALLKDIIN 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +Q + I+F ++ + +L LE + + I G + Q R ++ F++G++ +++ Sbjct: 244 NQ--AERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PDV HV NFD+P A+ Y+HRIGRT RAG+ G A ++V D +D + Sbjct: 302 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361 Query: 361 EKLIEKKV 368 + +++ + Sbjct: 362 ARYVKEDI 369 >gi|297826827|ref|XP_002881296.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp. lyrata] gi|297327135|gb|EFH57555.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp. lyrata] Length = 731 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 136/375 (36%), Positives = 208/375 (55%), Gaps = 25/375 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + L+ +++ AV AGY KP+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPML Sbjct: 313 WEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAY 372 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ + K+ V ++GG E Q Sbjct: 373 ISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGL 432 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+ +G +++I TPGR++D R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 433 KITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSS 492 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T T + I Sbjct: 493 NLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQH 552 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + + S+K LQ+LL K I+F N KKN ++ +L+K G+ V +HG Sbjct: 553 VIMM--KESEKFFRLQKLLDELGD-KTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKS 609 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+ RG+DIPDV HV N+D+P E Y HRIGRTGRAG Sbjct: 610 QEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 669 Query: 341 RHGKAFTLVAKEDIK 355 + G A + + D + Sbjct: 670 KSGVATSFLTLHDTE 684 >gi|194445037|ref|YP_002040904.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403700|gb|ACF63922.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 457 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VSLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHKPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|28900438|ref|NP_800093.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|153839119|ref|ZP_01991786.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|260362342|ref|ZP_05775305.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|260877390|ref|ZP_05889745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|260898427|ref|ZP_05906923.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|260902841|ref|ZP_05911236.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|28808749|dbj|BAC61926.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|149747374|gb|EDM58342.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|308085134|gb|EFO34829.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308090862|gb|EFO40557.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|308107910|gb|EFO45450.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|308111121|gb|EFO48661.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] Length = 416 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 220/370 (59%), Gaps = 19/370 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGL P +V + Y +PTPIQ IP VL D+ G A TG+GKTA+F LP+L Sbjct: 10 FADLGLIPTLVERLEALEYNQPTPIQSHAIPHVLDGRDMIGGANTGSGKTAAFSLPILQK 69 Query: 62 ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113 IL++G + R LIL PTRELA+QVA N + Y +Y+L TVA+ GG+ Sbjct: 70 ILQQGESNDRRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVN 126 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L G D+++ TPGR+LD + + ++ ++ LV+DEADRML +GF + I +L Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT +++ ++++ L +P +EV S+ A T ++ F + K Sbjct: 187 LPEKKQTLLFSATFPEKVTALAQHLLNDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 A+L L++ Q + +IF N K +L L K+G + HG+ Q +R ++L FK Sbjct: 242 AVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G IQ+++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G +L+ + Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 361 DYHHFKVIEK 370 >gi|270012072|gb|EFA08520.1| hypothetical protein TcasGA2_TC006173 [Tribolium castaneum] Length = 702 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 137/365 (37%), Positives = 214/365 (58%), Gaps = 3/365 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA K++ A++ A Y PTPIQ + +P LQ DV GIAQTG+GKTA+F+ P+L Sbjct: 233 FAHFNFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLKH 292 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + P LIL PTRELA Q+ + +K+ + Y+LTV GG Q+ L+ Sbjct: 293 VSTQPPVTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLALK 352 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+++ TPGRI+DH G + + LV+DEADRM ++GF P ++++ + V RQT Sbjct: 353 EGADIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQT 412 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++K++++ L +P RI E + + Q K+ L+ L++ Sbjct: 413 LLFSATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLVE 472 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++F +K + L + L+ + F +HG+I+Q R K+++ FK+ L+V Sbjct: 473 LL-SAGSVLVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLV 531 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP + V N+D+ + + HRIGRTGRAG G A+TL+ +D + + I Sbjct: 532 ATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKEFVGHI 591 Query: 361 EKLIE 365 K +E Sbjct: 592 VKNLE 596 >gi|160876048|ref|YP_001555364.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|160861570|gb|ABX50104.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|315268244|gb|ADT95097.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 427 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 141/362 (38%), Positives = 205/362 (56%), Gaps = 10/362 (2%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 LG+ ++ + + YV PT +Q TIP VL DV A TG+GKTA+F +P+L L + Sbjct: 14 LGIIAPLLNRLTELAYVSPTSVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVE 73 Query: 66 GRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120 + + R L+L PTRELA QVAD+F Y + N L + GG+ AQ + L Sbjct: 74 AKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLR 133 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GADVL+ TPGR+LD + + +N + LV+DEADRML +GF + + +P +QT Sbjct: 134 AGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQT 193 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +E+++++ L +P +E S TI + K ALL L++ Sbjct: 194 LLFSATFPEEVRELTAKLLNDP--LEYQFQSEQESTIHQRVITV--NRPMKTALLAHLIK 249 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +IF + K +L L K+G S HG+ Q +R ++L FK G I +++ Sbjct: 250 -EHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A TL++ ED H I Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVI 368 Query: 361 EK 362 EK Sbjct: 369 EK 370 >gi|71279863|ref|YP_269911.1| putative ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H] gi|71145603|gb|AAZ26076.1| putative ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H] Length = 448 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 212/373 (56%), Gaps = 5/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+D GL ++ + G+ +PT IQ + IP + HD+ ++TG+GKT +F++P L Sbjct: 1 MQFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPAL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L K RA R PR +IL PTRELA QV + N L++GG F Q K L Sbjct: 61 QRLSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178 ++ + ++ TPGR+ DH +G +N +E+L++DEADRMLD+GF + I R Sbjct: 121 QKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKR 180 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTLLFSAT+ ++ + + L PKRI +N S I F ++K ALLQ Sbjct: 181 QTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLA-DNLTQKEALLQH 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L ++ + + IIF + + L L +Q + A+ G ++Q R +I+ +F +G + Sbjct: 240 FLVTEKS-QQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHK 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++V +DLA+RGLD+ +V HV NFD+P E ++HRIGRTGRAG G A +LV D + Sbjct: 299 ILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSL 358 Query: 358 DAIEKLIEKKVDW 370 +E +++K+ + Sbjct: 359 KNVEAFLQQKISF 371 >gi|262405028|ref|ZP_06081580.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586] gi|262348867|gb|EEY98008.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586] Length = 436 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 219/383 (57%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD GL P+V+ + G+V TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T +GRA + PR +I+ PTRELA Q+ ++ E L AL GG ++ Q Sbjct: 71 LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLA 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+ G D+LI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L V + G++ Q+ R +IL F +G Sbjct: 248 QTLVE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE I+ + + D S+L Sbjct: 367 NLPAIESYIDHAIPTSDYDPSAL 389 >gi|256028357|ref|ZP_05442191.1| ATP-dependent RNA helicase [Fusobacterium sp. D11] gi|289766283|ref|ZP_06525661.1| ATP-dependent RNA helicase [Fusobacterium sp. D11] gi|289717838|gb|EFD81850.1| ATP-dependent RNA helicase [Fusobacterium sp. D11] Length = 528 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 139/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F DLGLS KV+ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ ++DEAD ML+MGFI I+ I + ++ Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM +E+ KV++N ++ + + V + T + E + V ++ C ++ Sbjct: 185 LFFSATMPEEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 358 LLQIQKAVKKEI 369 >gi|27363997|ref|NP_759525.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6] gi|27360114|gb|AAO09052.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6] Length = 408 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 214/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P ++ A+ + GY +PT IQ + IP L+ D+ A TGTGKTA+FVLP L Sbjct: 5 FADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA QVAD KN +L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR++++ + IE L++DEADRMLDMGF P + +++ + +QT+ Sbjct: 125 TQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTM 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ + ++ + + L +P I+ + I + K ALL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRA-DNMEHKLALLKDIIN 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +Q + I+F ++ + +L LE + + I G + Q R ++ F++G++ +++ Sbjct: 244 NQ--AERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PDV HV NFD+P A+ Y+HRIGRT RAG+ G A ++V D +D + Sbjct: 302 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361 Query: 361 EKLIEKKV 368 + +++ + Sbjct: 362 ARYVKEDI 369 >gi|269962284|ref|ZP_06176636.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] gi|269832987|gb|EEZ87094.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] Length = 437 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 145/382 (37%), Positives = 219/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADL L P+V+ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLDLKPQVIEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E + L AL GG ++ Q K Sbjct: 71 LLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+LI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ I+F N K ++ L G V + G++ Q+ R KIL F G + Sbjct: 249 TLIE-EEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ + Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + IE+ IE + + D S+L Sbjct: 368 LPPIEEYIEHAIPVSDYDASAL 389 >gi|62180220|ref|YP_216637.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583853|ref|YP_002637651.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911959|ref|ZP_04655796.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|62127853|gb|AAX65556.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468380|gb|ACN46210.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714692|gb|EFZ06263.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 457 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|225442260|ref|XP_002279117.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743075|emb|CBI35942.3| unnamed protein product [Vitis vinifera] Length = 506 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 146/426 (34%), Positives = 226/426 (53%), Gaps = 29/426 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F D+GL V+ + AG+ +PTPIQ + P+ L+ DV GIA+TG+GKT +++LP + Sbjct: 100 MNFRDVGLPEYVMQEITKAGFAEPTPIQAQGWPMALKGRDVIGIAETGSGKTLAYLLPAI 159 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 IL G P L+L PTRELA Q+ K+G + + + GG+P Sbjct: 160 IHVNAQPILAPGDG----PIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIHGGVPKGP 215 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L++G +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 216 QIRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI 275 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL +SAT E+++++ FL NP ++ + + A V ++ K L Sbjct: 276 RPDRQTLYWSATWPKEVEQLARKFLYNPCKVVIGSADLKANHAIRQHVEIVSENQKYNRL 335 Query: 235 LQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ L +D M G +IF + KK + L G+ +IHG+ Q R +LS FK Sbjct: 336 VKLL---EDIMDGGRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 392 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G +M A+D+AARGLD+ DV V N+D P E+Y+HRIGRTGRAG G A+T Sbjct: 393 AGKSPIMTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 452 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 + + + ++E+ + +L+++ R P P GF R + Sbjct: 453 NARFAKELITILEEAGQRVAPELAAM--------------GRGAPPPPSGHGGFRDRGRG 498 Query: 413 YSSQKS 418 + S ++ Sbjct: 499 HGSGRA 504 >gi|182436152|ref|YP_001823871.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464668|dbj|BAG19188.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 731 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 135/348 (38%), Positives = 208/348 (59%), Gaps = 12/348 (3%) Query: 31 TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80 T+P+ L DV G A+TGTGKT F LP+L T+ +E GRA+ P+ L++ P Sbjct: 2 TLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPEQLTDAPQALVVVP 61 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 TREL QV ++ GK N+ V + GG +E Q + L++G DV++ TPGR+LD + Sbjct: 62 TRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQR 121 Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200 KL +++I LV+DEAD MLD+GF+P ++ I +++P RQT+LFSATM + ++ ++ Sbjct: 122 KLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLFSATMPGAVISLARRYMS 181 Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 P I +P T+++ Y A K +L ++LQ++ +IFC K+ Sbjct: 182 QPTHINATSPDDEGTTVKNTVQHVYRAHNMDKPEMLARILQAEG-RGLAMIFCRTKRTAA 240 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 ++ LEK+GF+ A+HG++ Q +R + L F+ G + ++V +D+AARG+D+ V HV N Sbjct: 241 DIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVVN 300 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367 + P + Y+HRIGRTGRAG G A TLV +DI I K ++ K Sbjct: 301 YQSPEDEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKALDLK 348 >gi|189239856|ref|XP_974261.2| PREDICTED: similar to CG6418 CG6418-PB [Tribolium castaneum] Length = 699 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 137/365 (37%), Positives = 214/365 (58%), Gaps = 3/365 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA K++ A++ A Y PTPIQ + +P LQ DV GIAQTG+GKTA+F+ P+L Sbjct: 233 FAHFNFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLKH 292 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + P LIL PTRELA Q+ + +K+ + Y+LTV GG Q+ L+ Sbjct: 293 VSTQPPVTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLALK 352 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+++ TPGRI+DH G + + LV+DEADRM ++GF P ++++ + V RQT Sbjct: 353 EGADIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQT 412 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++K++++ L +P RI E + + Q K+ L+ L++ Sbjct: 413 LLFSATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLVE 472 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++F +K + L + L+ + F +HG+I+Q R K+++ FK+ L+V Sbjct: 473 LL-SAGSVLVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLV 531 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP + V N+D+ + + HRIGRTGRAG G A+TL+ +D + + I Sbjct: 532 ATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKEFVGHI 591 Query: 361 EKLIE 365 K +E Sbjct: 592 VKNLE 596 >gi|15226155|ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis thaliana] gi|75319077|sp|P93008|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21 gi|1707017|gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gi|17473908|gb|AAL38370.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gi|20259792|gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gi|330253781|gb|AEC08875.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana] Length = 733 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 136/375 (36%), Positives = 208/375 (55%), Gaps = 25/375 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + L+ +++ AV AGY KP+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPML Sbjct: 315 WEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAY 374 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ + K+ V ++GG E Q Sbjct: 375 ISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGL 434 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+ +G +++I TPGR++D R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 435 KITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSS 494 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T T + I Sbjct: 495 NLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQH 554 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + + S+K LQ+LL K I+F N KKN ++ +L+K G+ V +HG Sbjct: 555 VIMM--KESEKFFRLQKLLDELGE-KTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKS 611 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+ RG+DIPDV HV N+D+P E Y HRIGRTGRAG Sbjct: 612 QEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 671 Query: 341 RHGKAFTLVAKEDIK 355 + G A + + D + Sbjct: 672 KSGVATSFLTLHDTE 686 >gi|116750069|ref|YP_846756.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699133|gb|ABK18321.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans MPOB] Length = 533 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 213/373 (57%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L ++ + DA + TPIQ +P L D G AQTGTGKTA F++ MLT Sbjct: 118 FHDLDLPAPILRGIADAEFRYCTPIQAALLPHTLNGLDAAGRAQTGTGKTAVFIITMLTQ 177 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + A R PR L+L PTRELA Q+ ++ + GG+ +E Q ++ Sbjct: 178 FLRNPAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFGGMDYEKQKRR 237 Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L D+++ TPGR+LD +G L ++ +EILVIDEADRMLDMGFIP +Q I P Sbjct: 238 LTGEVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLDMGFIPDVQRIIHYTPPK 297 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT+LFSAT+T E+ + + + +NP +E+ +T+ + T +K LL Sbjct: 298 AQRQTMLFSATLTAEVTRFASQWTRNPVTVEIEPEQVAVDTVNQRVLIT--TIDEKFTLL 355 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ Q+ + I+F N++ L L G S + G +DQ+ R+K L F+ G Sbjct: 356 FNMITRQN-LDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNGK 414 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I+++VA+D+AARGL + V HVFN+++P E+Y+HRIGRTGRAG G + + +++D Sbjct: 415 IRVLVATDVAARGLHVEAVSHVFNYNMPMDPEDYVHRIGRTGRAGTSGISVSFASEDDSF 474 Query: 356 HIDAIEKLIEKKV 368 I A+EK + ++ Sbjct: 475 LIPALEKYLGHEI 487 >gi|108757460|ref|YP_630529.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622] gi|108461340|gb|ABF86525.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622] Length = 418 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 214/366 (58%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS + + A+ A + +PTPIQ + IP L DV G A TGTGKTA++VLP++ Sbjct: 5 FDNLGLSRETLGALRRARFTQPTPIQQQAIPPALAGRDVIGCAATGTGKTAAYVLPLVER 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTREL Q+A+ + + LT A +IGG AQ L+ Sbjct: 65 LAGKKGTL----ALVLAPTRELVQQIAEPVRFFAEPRRLTHATVIGGEDMGAQVNALKTL 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +I TPGR++D + ++E LV+DEADRMLDMGF+P ++ I + +P RQTLL Sbjct: 121 PSFVIATPGRLVDLMENTAIRFPHLEALVLDEADRMLDMGFLPQLERIVAHLPRRRQTLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++ + +++ L P R+EV + AE E + + +K LL LL +Q Sbjct: 181 FSATLGPDVTRFAKSRLYKPVRLEVTRSGTPAERAEQRLY--FLRPEEKTPLLLTLL-AQ 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D+ ++F K+ V + +L++ G +H + Q R + + F+ GT + +VA+ Sbjct: 238 DSA-TALVFTRAKERVDKVQRALQRAGHRTAVLHADRTQNQRKQAMEGFRNGTYRCLVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ DVGHV N+D+P+ AE+Y+HRIGRT RA G A T + + I IE Sbjct: 297 DIAARGLDVEDVGHVINYDLPHAAEDYVHRIGRTARAAASGVASTFATTREGQVITRIEH 356 Query: 363 LIEKKV 368 L+ ++ Sbjct: 357 LMRSEI 362 >gi|323494189|ref|ZP_08099304.1| ATP-dependent RNA helicase RhlB [Vibrio brasiliensis LMG 20546] gi|323311583|gb|EGA64732.1| ATP-dependent RNA helicase RhlB [Vibrio brasiliensis LMG 20546] Length = 434 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 155/424 (36%), Positives = 234/424 (55%), Gaps = 16/424 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P++ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTAAFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E + + AL GG ++ Q K Sbjct: 71 LLTTSEHEGRKPNQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G DVLI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LEDGVDVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELF--YPSNEHKMALLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ IIF N K ++ L G V + G++ Q+ R +IL F G + Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILDQFTRGEV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ + Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK--STGFDRRKKNYS 414 + IE+ IE + + D S+L D+ R N P Q+ +TG R S Sbjct: 368 LPPIEEYIEHTIPVSDYDPSALIQ-----DLPAPIRMRSNRPQQQRRTNTGGSRSGNRRS 422 Query: 415 SQKS 418 + +S Sbjct: 423 NHRS 426 >gi|109124055|ref|XP_001115617.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Macaca mulatta] Length = 527 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 233/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVAQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P ST E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q QD ++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 IQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I+KK++ + + + + L ++++ R+ I ++ FD +K+ Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409 >gi|168462889|ref|ZP_02696820.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634348|gb|EDX52700.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 457 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|297202208|ref|ZP_06919605.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083] gi|297148059|gb|EDY61279.2| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083] Length = 723 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 136/350 (38%), Positives = 210/350 (60%), Gaps = 16/350 (4%) Query: 31 TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80 T+P+ L DV G A+TGTGKT F LP+L T+ +E GRA+ P+ L++ P Sbjct: 2 TLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPEDLTDAPQALVVVP 61 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 TREL QV ++ + GK N+ V + GG +E Q + L++G DV+I TPGR+LD + Sbjct: 62 TRELCTQVTNDLQTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVVIGTPGRLLDLAGQK 121 Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200 KL +++I+ LV+DEAD MLD+GF+P ++ I +L+P RQT+LFSATM + ++ ++ Sbjct: 122 KLNLSHIKALVLDEADEMLDLGFLPDVEKIINLLPARRQTMLFSATMPGAVISLARRYMS 181 Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGI--IFCNQKKN 257 P I +P T+ + Y A K ++ ++LQ++ G+ +FC K+ Sbjct: 182 QPTHINATSPDDAGRTVANTKQHVYRAHNMDKPEMVARILQAEG---RGLVMVFCRTKRT 238 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 +L L+++GF+ A+HG++ Q +R + L F+ G + ++V +D+AARG+D+ V HV Sbjct: 239 AADLADQLKQRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHV 298 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367 N+ P + Y+HRIGRTGRAG G A TLV +DI I K +E K Sbjct: 299 INYQCPEEEKTYLHRIGRTGRAGAKGIAITLVDWDDIPRWQLINKALELK 348 >gi|168260141|ref|ZP_02682114.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350697|gb|EDZ37328.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 457 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|187779626|ref|ZP_02996099.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC 15579] gi|187773251|gb|EDU37053.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC 15579] Length = 481 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 224/368 (60%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + LS +++ ++ GY P+ +Q + IPL+L+ D+ ++TG+GKTA+F +P Sbjct: 4 LTFENYKLSDEILKSLRKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK + P+ L+L PTRELA Q+ + L + G P Q ++L+ Sbjct: 62 -VCEKLELEEKDPQVLVLTPTRELALQIKEEISNIALYKRLRCTAIFGKQPMSLQKRELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR LDH R L + I+ ++DEAD ML+MGFI ++ + +P R T Sbjct: 121 QRVHLVVGTPGRTLDHIERENLNLKKIKYFILDEADEMLNMGFIDQVEAVIKRLPKDRVT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ D+++ + + ++ NP+ I +N + T +TI C+ + K +LLQ+++ Sbjct: 181 MLFSATIPDKIENLCKRYMNNPENININPENITTKTINQCYYEVEGK--NKFSLLQKII- 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + N IIFCN ++ V + ++K+GF+ A+HG ++Q+ R++ + FK+G Q +V Sbjct: 238 YKEVVDNSIIFCNTREKVDEILKYMKKEGFNAIALHGGMEQKDRLETMKKFKQGQFQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ I ++ HV N+++P E+Y+HRIGRTGRAG+ G A T + ++ + I Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDI 357 Query: 361 EKLIEKKV 368 E I+K++ Sbjct: 358 EDYIDKEI 365 >gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2] gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2] Length = 423 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 215/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+L L P ++ A+ + G+ +PT +Q + IP L DV A TGTGKTA+FV+P L Sbjct: 5 FANLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QVA+ + KN L + + GG+ ++ L Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++ + + L++P ++ P + I + K LL+++L Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F ++ + +L LEK I G + Q R +S F+EG + +++ Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV D + + Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361 Query: 361 EKLIEKKV 368 E+ I+++V Sbjct: 362 ERYIKEEV 369 >gi|16764999|ref|NP_460614.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992838|ref|ZP_02573934.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262502|ref|ZP_03162576.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16420182|gb|AAL20573.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240757|gb|EDY23377.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329063|gb|EDZ15827.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246847|emb|CBG24663.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993587|gb|ACY88472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158183|emb|CBW17681.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912646|dbj|BAJ36620.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224281|gb|EFX49344.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129924|gb|ADX17354.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988542|gb|AEF07525.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 457 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC 43183] gi|167699397|gb|EDS15976.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC 43183] Length = 430 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 223/371 (60%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ K+IP++L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MKFSELNLNDNVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +++ PTRELA Q+ E + ++ + GG + FE Q + Sbjct: 61 NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q++++N L NP +++ + ++ ++ Q K +++ Sbjct: 181 RQTIMFSATMPAKIQQLAQNILHNPAEVKLAVSKPAEKIVQAAYICYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q T + IIF + K V + +L++ +V +H +++Q R +++ FK G I Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVAKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V +++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356 Query: 358 DAIEKLIEKKV 368 +IE +EK++ Sbjct: 357 KSIENFLEKEI 367 >gi|296328514|ref|ZP_06871033.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154323|gb|EFG95122.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 528 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F +LGLS KV+ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ ++DEAD ML+MGF+ I+ I + ++ Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM DE+ KV++N ++ + + V + T + E + V ++ C ++ Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 358 LLQIQKAVKKEI 369 >gi|197336247|ref|YP_002156253.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] gi|197317737|gb|ACH67184.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] Length = 421 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 216/369 (58%), Gaps = 13/369 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGL ++ + + Y +PTPIQ + IP VL D+ A TG+GKTA+F LP+L Sbjct: 9 NFTELGLISPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPLLQ 68 Query: 62 -ILEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 I E ++ + + L+L PTRELA QVAD+ + Y ++N + + GG+ Sbjct: 69 QIAELQSSKAQASKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVN 128 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L GAD+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + + +L Sbjct: 129 TQMLALRGGADILVATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLAL 188 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 P +QTLLFSAT +E+Q +++ L NP +E+ S+ A T+ + +K + Sbjct: 189 APKQKQTLLFSATFPEEVQTLTQALLNNP--VEIQLQSADASTVVQRVLTV--NKGEKTS 244 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 +L L+Q ++ + +IF N K +L L K+G + HG+ Q +R ++L FK Sbjct: 245 VLAHLIQ-KNQWRQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKA 303 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I +++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A +L+ ED Sbjct: 304 GEIDVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYED 363 Query: 354 IKHIDAIEK 362 H IEK Sbjct: 364 YHHFKIIEK 372 >gi|209809352|ref|YP_002264890.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida LFI1238] gi|208010914|emb|CAQ81319.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida LFI1238] Length = 442 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 216/370 (58%), Gaps = 15/370 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGL ++ + + Y +PTPIQ + IP VL D+ A TG+GKTA+F LP+L Sbjct: 22 NFTELGLITPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPILQ 81 Query: 62 ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFE 113 L + + + LIL PTRELA QVAD+ + Y ++N + + GG+ Sbjct: 82 QLHEDKPFSTKSGKGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSAN 141 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + + L Sbjct: 142 TQMLALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELSALLDL 201 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT +++Q +++ L +P IE+ S+ A T ++ F + K Sbjct: 202 LPKQKQTLLFSATFPEQVQTLTQELLNDP--IEIQVQSADASTLVQRVFTVNKGE---KT 256 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ALL L++ Q+ + +IF N K + +L L K+G + HG+ Q +R +IL FK Sbjct: 257 ALLAHLIK-QNEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRILEAFK 315 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I++++A+++AARGLDI + V NFD+P +Y+HRIGR+GRAG G A +L+ E Sbjct: 316 LGEIEVLIATNIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 375 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 376 DYHHFKIIEK 385 >gi|200389990|ref|ZP_03216601.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602435|gb|EDZ00981.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 457 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 EAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|145352866|ref|XP_001420755.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580990|gb|ABO99048.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 466 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 222/376 (59%), Gaps = 22/376 (5%) Query: 3 FADLGLSPKVV--CAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 F DLG+ ++ CA + G+ PTPIQ +P L+ DV G+AQTG+GKT +F LP+L Sbjct: 19 FEDLGVCAELADACAKI-MGWRAPTPIQCAAVPEALRERDVIGLAQTGSGKTGAFALPIL 77 Query: 61 TILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + P+ +LIL PTRELA Q+A+ E G A L+GG+ Q Sbjct: 78 QSL------LDAPQGFHSLILSPTRELAMQIAEQIETLGAGVGARTATLVGGVDMTTQAI 131 Query: 118 KLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL + V++ TPGR++DH K + +++LV+DEADR+L++ F I I ++P Sbjct: 132 KLGKRPHVIVGTPGRVVDHLENTKGFSLRALKVLVLDEADRLLNLDFEEEIDKILRVIPS 191 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R+T LFSATMT+++ K+ L++P ++EV+ ST E+++ ++ A++ K C Sbjct: 192 DRRTQLFSATMTNKVAKLQRACLRDPVKVEVSAKYSTVESLKQHYLFIPAKH-KDC--YA 248 Query: 237 QLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L ++ + I+F C+ + + + +L GF IHG + Q R+ L FK Sbjct: 249 TYLFNELSASTLIVFARTCDATRKLALIARNL---GFGAVPIHGQMSQPKRIAALQKFKS 305 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +++A+D+A+RGLDIP V V N+DVP +++Y+HR+GRT RAGR G A T+V + D Sbjct: 306 GERNILIATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYD 365 Query: 354 IKHIDAIEKLIEKKVD 369 ++ IE+LI KK+D Sbjct: 366 VELYQKIERLINKKLD 381 >gi|323203477|gb|EFZ88501.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 380 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 211/355 (59%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L + + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAF---GLGLLHRIDVTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT D + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSVH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8] gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8] Length = 771 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 143/361 (39%), Positives = 210/361 (58%), Gaps = 5/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++ A+ G+ KPTPIQ TIP+ L DV G A TG+GKTA+F +PML Sbjct: 181 FLTMNLSRPILKALTTLGFTKPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFTIPMLER 240 Query: 63 L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L EKG+ + R L+L PTRELA Q + +K + ++ VAL++GG+ ++Q L Sbjct: 241 LLYREKGK-KAAATRCLVLVPTRELAVQCYEVGKKLAAHTDIEVALIVGGLSLKSQEATL 299 Query: 120 ERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 D++I TPGR++DH N ++N+++LV+DEADRML GF + I P +R Sbjct: 300 RARPDIVIATPGRLIDHIHNSPSFTLDNLDVLVLDEADRMLSDGFADELTEIIKACPKSR 359 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSATMTD + ++ L P R+ V+ STA+ + FV A K+ + L Sbjct: 360 QTMLFSATMTDSVDELVRMSLDKPVRLFVDPKRSTAKGLIQEFVRVRAGREKERSPLLVA 419 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ IIF KK L G +HG++ Q R+ L F++GT+ Sbjct: 420 LCTRTFKTRVIIFVRSKKLAHQLRIVFGLVGLKCGELHGDLSQEQRLNALQQFRDGTVDY 479 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+DLA+RGLDI V V N+D+P + Y+HR+GRT RAG+ G++ TLV + D K + Sbjct: 480 LMATDLASRGLDIKGVETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEGDRKMLK 539 Query: 359 A 359 A Sbjct: 540 A 540 >gi|301064349|ref|ZP_07204778.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2] gi|300441525|gb|EFK05861.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2] Length = 595 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 225/365 (61%), Gaps = 8/365 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 MDF LGL +++ AV D GY +PTPIQ K IP +L+ R D+ G+AQTGTGKTA++ LP+ Sbjct: 1 MDFETLGLKARLIKAVQDLGYKEPTPIQKKAIPALLENRQDLVGLAQTGTGKTAAYGLPL 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L +++ +RV+ LIL PTREL Q++ + +Y + + + + GG E Q ++ Sbjct: 61 LQLIDFSTSRVQ---GLILCPTRELCFQISKDLARYSRYVEHAKIVAVYGGAGMEPQIRQ 117 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 +++GA ++ TPGR+LD RG + +++I+ +V+DEAD ML MGF + I + P + Sbjct: 118 IKKGAQIITATPGRLLDLIKRGIVNLHDIDYVVLDEADEMLTMGFQEDLDEILAQTPPEK 177 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 ++ LFSATMT + ++S+N+L++P I V +S A I H F + ++ AL + + Sbjct: 178 RSWLFSATMTAPVARISQNYLKDPLEITVGRKNSGASNISH-FKYVVLEKNRYPALKRII 236 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 D ++FC +K + L + G++ ++HG++ Q R ++ F+E ++Q+ Sbjct: 237 DYHPDIF--SLVFCRTRKETQAVAEKLIRDGYNAESLHGDLSQTQRDYVMGRFRERSLQI 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ D+ HV ++++P+ Y HR GRT RAG+ G + L+ + + + Sbjct: 295 LVATDVAARGLDVDDISHVIHYNLPDEPGAYTHRSGRTARAGKSGASIVLMNTRENRKLA 354 Query: 359 AIEKL 363 +E++ Sbjct: 355 HVEQV 359 >gi|118618015|ref|YP_906347.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99] gi|118570125|gb|ABL04876.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99] Length = 517 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 219/377 (58%), Gaps = 18/377 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ ++V A+ + P IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 15 FAELGVRDEIVRALGERDIEGPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 74 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFE---KY-------GKNYNLTVALLIGG 109 + G R PR L++ PTREL QV ++ KY G L+V + GG Sbjct: 75 VSSGTGVRPLTGAPRALVVVPTRELCLQVTEDLAVAAKYLTATTETGDQRPLSVVSIYGG 134 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 +E Q + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ Sbjct: 135 RAYEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLYVLVLDEADEMLDLGFLPDIER 194 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQ 227 I +P RQ++LFSATM D + ++ F+ P I P S A +T E +A Sbjct: 195 ILRQIPADRQSMLFSATMPDPIITLARTFMIQPTHIRAEAPHSLAVHDTTEQFVYRAHAL 254 Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 K L+ ++LQ+++ +IF K+ + L ++GF+V A+HG++ Q +R K Sbjct: 255 --DKVELVTRVLQARERGAT-MIFTRTKRTAQKVADELNERGFAVGAVHGDLGQVAREKA 311 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L +F+ G++ ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G A T Sbjct: 312 LKSFRRGSVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVT 371 Query: 348 LVAKEDIKHIDAIEKLI 364 LV +++ I+K + Sbjct: 372 LVDWDELPRWTMIDKAL 388 >gi|148652579|ref|YP_001279672.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571663|gb|ABQ93722.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1] Length = 383 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 144/376 (38%), Positives = 229/376 (60%), Gaps = 15/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FADL LS ++ +V D G+ + T IQ + +P L D G AQTGTGKTA+F++ ++ Sbjct: 7 FADLSLSDSILRSVNDLGFTELTGIQAQILPHTLAGQDAIGQAQTGTGKTATFLITIIEA 66 Query: 62 ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L++ A M PR LIL PTRELA Q+ D+ K+ +L ++GGI ++ Q Sbjct: 67 LLKRPFADDEMRYIGEPRALILAPTRELANQIYDDAIALTKHTSLHSVCVMGGIDYDKQI 126 Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L++ D+LI TPGR++D +G + ++ IE V+DEADRMLDMGFIP I+ + +P Sbjct: 127 AALDKSYTDILIATPGRLIDLIYKGHVFLDRIEAFVLDEADRMLDMGFIPDIKRLMRYMP 186 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKC 232 RQ+LLFSAT ++ ++ +L NP +E+ T++ +E H ++ T A K Sbjct: 187 PNTDRQSLLFSATFNQDVMNLAYQWLMNPVFVEIEPEHKTSDLVEQHFYLLTEA--DKHQ 244 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 AL+Q L Q + K I+F N+K V L L +V + G++DQ R + L FK Sbjct: 245 ALIQILAQPE--TKKVIVFANRKDQVKRLYTKLSAD-HNVVMLSGDVDQAKRERYLDKFK 301 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G +++VA+D+A RG+ + D+ HV N+ +P++ ++Y+HRIGRTGRAG+ G + + V+++ Sbjct: 302 NGNAKVLVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQKGISISFVSED 361 Query: 353 DIKHIDAIEKLIEKKV 368 D ++ AIE +++ + Sbjct: 362 DAFNLPAIEAHLDRHL 377 >gi|300721423|ref|YP_003710694.1| putative ATP-dependent helicase with nucleoside triP hydrolase domain [Xenorhabdus nematophila ATCC 19061] gi|297627911|emb|CBJ88457.1| putative ATP-dependent helicase with nucleoside triP hydrolase domain [Xenorhabdus nematophila ATCC 19061] Length = 427 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 221/373 (59%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ G+ TPIQ T+P ++ DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVLGALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 63 L---EKGRAR-VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L G+ R + PR LI+ PTRELA Q+ + ++ + L + L GG ++ Q K Sbjct: 71 LLTHPAGKERKINQPRALIMAPTRELAVQIYSDAKELAEVTGLKMGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 LE G D++I T GR++D+ +G + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDIVIGTTGRLIDYAKQGHIHLGAIQVVVLDEADRMYDLGFIKDIRWLFRRIPAAT 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R LLFSAT++ +++++ + NP+ +EV T I E F Y +K LL Sbjct: 191 ERLNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIREELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDIWTHLAADGHRVGLLTGDVAQKKRLRILEEFSLGN 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E + Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYVL 366 Query: 356 HIDAIEKLIEKKV 368 ++ +IE+ I+ ++ Sbjct: 367 NLPSIEEYIQHQI 379 >gi|224078085|ref|XP_002191498.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Taeniopygia guttata] Length = 770 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 162/468 (34%), Positives = 253/468 (54%), Gaps = 26/468 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F+LP+L Sbjct: 179 LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL 238 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + N+T L +GG+ + Q L Sbjct: 239 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALR 298 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR++DH N ++++E+L++DEADRMLD F ++ I L RQ Sbjct: 299 SGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSHHRQ 358 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238 T+LFSATMT+E++ ++ L+NP RI VN+ + A + F+ + + A++ L Sbjct: 359 TMLFSATMTEEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVTAL 418 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L T ++ ++ Q K + H L G V +HGN+ Q R++ L FK+ I Sbjct: 419 LTR--TFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQID 476 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAG+ G++ +LV +E+ K + Sbjct: 477 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEERKML 536 Query: 358 DAIEKL-----------------IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400 I K +K++ L D+ ++ + Q + A+ N Sbjct: 537 KEIVKTAKTPVKARILPQDVILKFREKIENLEKDIYAVLCLEREEREMQQSEAQINKAKK 596 Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448 Q TG + + S ++S +E K KL + +QE D L RG Sbjct: 597 QLETG-KKEAGSESLERSWFQTREERKKEKLAKALQEFD---LALRGK 640 >gi|34763211|ref|ZP_00144175.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256846171|ref|ZP_05551629.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2] gi|27887121|gb|EAA24228.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256719730|gb|EEU33285.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2] Length = 528 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F +LGLS KV+ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ ++DEAD ML+MGF+ I+ I + ++ Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM DE+ KV++N ++ + + V + T + E + V ++ C ++ Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 358 LLQIQKAVKKEI 369 >gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca] Length = 383 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 139/361 (38%), Positives = 216/361 (59%), Gaps = 12/361 (3%) Query: 12 VVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70 V+C D G+ KPT IQI+ IPL LQ D+ G+A+TG+GKT +F LP+L L + R+ Sbjct: 5 VLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 64 Query: 71 RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130 L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + ++I TP Sbjct: 65 F---ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATP 121 Query: 131 GRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189 GR++DH K + ++ LV+DEADR+L+M F + I ++P R+T LFSATMT Sbjct: 122 GRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 181 Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQLLQSQDTMKN 247 ++QK+ L+NP + V++ T E ++ + F+ + + + +L +L + + Sbjct: 182 KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN-----S 236 Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307 +IFC+ N L GF+ +HG + Q R+ L+ FK +++A+D+A+R Sbjct: 237 FMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASR 296 Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367 GLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ IE LI KK Sbjct: 297 GLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKK 356 Query: 368 V 368 + Sbjct: 357 L 357 >gi|281355042|ref|ZP_06241536.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC BAA-548] gi|281317922|gb|EFB01942.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC BAA-548] Length = 627 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 215/362 (59%), Gaps = 7/362 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60 +F LG+S +V+ A+ G+ P+PIQ TIP +L+ D+ G AQTGTGKTA+F +P++ Sbjct: 6 NFRKLGVSEEVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAAFGIPVI 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + E G + P+ LIL PTREL+ Q+A+ L +A GG E Q ++L Sbjct: 66 ELCEGGGKK---PQALILSPTRELSIQIAEELNSLKGKRKLRIAPFYGGQMIEIQLQRLR 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV+I TPGRI+D RGKL + ++ V+DEAD MLDMGF+ I+ I ++ Sbjct: 123 DGIDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKRM 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM E+ K++E F+++ + + + E E + + K L +++ Sbjct: 183 LMFSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIYFEV--RREDKFEALSRIID 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++FC + +V L L+ +G V A+HG+I Q R ++++ FK+ ++++ Sbjct: 241 VEQDL-YALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P E Y+HRIGRTGRAG++G A T V + + + I Sbjct: 300 ATDVAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTMI 359 Query: 361 EK 362 ++ Sbjct: 360 QR 361 >gi|237742838|ref|ZP_04573319.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13] gi|229430486|gb|EEO40698.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13] Length = 528 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F +LGLS KV+ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ ++DEAD ML+MGF+ I+ I + ++ Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM DE+ KV++N ++ + + V + T + E + V ++ C ++ Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 358 LLQIQKAVKKEI 369 >gi|332253514|ref|XP_003275885.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Nomascus leucogenys] Length = 483 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 233/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P ST E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q QD ++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 IQCFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I+KK++ + + + + L ++++ R+ I ++ FD +K+ Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAKVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409 >gi|31542656|ref|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo sapiens] gi|114676212|ref|XP_512518.2| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Pan troglodytes] gi|74753527|sp|Q9Y6V7|DDX49_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName: Full=DEAD box protein 49 gi|2443870|gb|AAB81544.1| R27090_2 [Homo sapiens] gi|12803677|gb|AAH02674.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Homo sapiens] gi|119605165|gb|EAW84759.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49, isoform CRA_b [Homo sapiens] gi|312152524|gb|ADQ32774.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [synthetic construct] Length = 483 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 233/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P ST E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q QD ++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 IQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I+KK++ + + + + L ++++ R+ I ++ FD +K+ Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409 >gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus] Length = 467 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 138/361 (38%), Positives = 209/361 (57%), Gaps = 11/361 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + + V+ VL G+ KPTPIQ + P+ L D+ GI+ TG+GKT +F+LP + Sbjct: 61 MTFEEASMPEYVLREVLKQGFPKPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAM 120 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L++ PTRELA Q+ + +K+G + ++ + GG+P + Sbjct: 121 IHINAQPYLEQGDG----PIVLVVAPTRELAVQIKEECDKFGGSSDIKNTCVYGGVPKRS 176 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L RG +++I TPGR++D GK + + LV+DEADRMLDMGF P I++I S + Sbjct: 177 QVYDLSRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRSIVSQI 236 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL++SAT E++ ++ +FL+N ++ V + +A V + K + Sbjct: 237 RPDRQTLMWSATWPKEVEGLARDFLRNYYQVTVGSLELSANKDIQQVVEIVEDFG-KYRV 295 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L + LQ + +IF KK L SL +G+ AIHG+ +Q R ++L +FKEG Sbjct: 296 LAKHLQEHNNAGRVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEG 355 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++VA+D+AARGLD+ D+ V NFD P E+Y+HRIGR GRAG G A + A ++ Sbjct: 356 RSLILVATDVAARGLDVKDIRMVINFDFPKEMESYVHRIGRCGRAGHKGTAISFFAGKNS 415 Query: 355 K 355 K Sbjct: 416 K 416 >gi|152969927|ref|YP_001335036.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954776|gb|ABR76806.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 457 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 219/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F+ L + P A L + GY+ TP+Q +P +L DV A+TG+GKTA+F L +L Sbjct: 4 FSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R + +L+L PTRELA QVA + + N+ + +L GG PF AQ L+ Sbjct: 64 HIDPARFETQ---SLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH +G + ++ ++ LV+DEADRMLDMGF I + P RQT Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + +S +NP+ IE+NT + IE F K ALLQ+LL Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEINTVDAL-PAIEQQFFEV--SRHGKIALLQRLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 SQ + ++FCN K++ +C +L G S ++HG+++QR R + L F G+++++V Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382 +++ ++WL + PL Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378 >gi|260495553|ref|ZP_05815678.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33] gi|260196895|gb|EEW94417.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33] Length = 528 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 16/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F DLGLS KV+ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ ++DEAD ML+MGF+ I+ I + ++ Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM +E+ KV++N ++ + + V + T + E + V ++ C ++ Sbjct: 185 LFFSATMPEEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 358 LLQIQKAVKKEI 369 >gi|161613874|ref|YP_001587839.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168230079|ref|ZP_02655137.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471340|ref|ZP_03077324.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|161363238|gb|ABX67006.1| hypothetical protein SPAB_01610 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194457704|gb|EDX46543.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335550|gb|EDZ22314.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 457 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|281343550|gb|EFB19134.1| hypothetical protein PANDA_000569 [Ailuropoda melanoleuca] Length = 457 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P T E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q+ QD ++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 IQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I+KK++ L+ + + + L ++++ R+ I ++ FD +K+ Sbjct: 359 LVHAIEEQIKKKLEELSVEEAKVLQILTQVNV-----VRRECEIKLEAANFDEKKE 409 >gi|326774180|ref|ZP_08233462.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505] gi|326636319|gb|EGE37223.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505] Length = 558 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 143/412 (34%), Positives = 225/412 (54%), Gaps = 23/412 (5%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FAD G+ P++ C LDA G P PIQ T+P+ L+ D+ G A+TGTGKT F +P+L Sbjct: 72 FADFGVEPEI-CEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLM 130 Query: 62 IL----EKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 E+G P+ L++ PTRELA QVA+ + + + GG +E Sbjct: 131 DTLGPGEEGWDEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEP 190 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERGA+V++ TPGR++D RG L + ++ +V+DEAD MLD+GF+P ++ I + Sbjct: 191 QIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILART 250 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCA 233 R T+LFSATM + ++ ++ P I P T++ Y +S K Sbjct: 251 RADRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVE 310 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 ++ ++LQ++ + IIF K+ + L +GF+ A+HG++ Q +R + L F+ Sbjct: 311 VVSRILQAEGRGRT-IIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRN 369 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 + ++VA+D+AARG+D+ DV HV N+ P + Y+HRIGRTGRAG G A T V +D Sbjct: 370 NKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDD 429 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 + I K + ++ P+E ++H + + IP+K TG Sbjct: 430 VPRWRIIAKALGLPIE----------EPVETYHTSEHLFS--DLSIPEKVTG 469 >gi|198463474|ref|XP_002135506.1| GA28589 [Drosophila pseudoobscura pseudoobscura] gi|198151271|gb|EDY74133.1| GA28589 [Drosophila pseudoobscura pseudoobscura] Length = 799 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 144/388 (37%), Positives = 220/388 (56%), Gaps = 15/388 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 +DF + G V+ + G+ KPT IQ + P+ L D+ G+AQTG+GKT ++VLP + Sbjct: 142 IDFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAV 201 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L+L PTRELA Q+ ++G N ++ + GG P Sbjct: 202 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 257 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 258 QARDLERGVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 317 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCA 233 RQ L++SAT E+++++E FL N I+VN S T + + S+K Sbjct: 318 RPDRQVLMWSATWPKEVRQLAEEFLTN--YIQVNIGSLTLSANHNILQIVDVCDESEKLG 375 Query: 234 LLQQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L +LL S + IIF KK V + ++ +QG+ CAIHG+ Q+ R +LS+F Sbjct: 376 KLIKLLSDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSF 435 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL Sbjct: 436 RNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTH 495 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLN 379 + + + +++ + +N L S++ Sbjct: 496 SNANKANDLIQVLREANQEINPKLLSMS 523 >gi|163803186|ref|ZP_02197068.1| ATP-dependent RNA helicase [Vibrio sp. AND4] gi|159173007|gb|EDP57841.1| ATP-dependent RNA helicase [Vibrio sp. AND4] Length = 437 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 218/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADL L P+V+ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLDLKPQVIEGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E + L AL GG ++ Q K Sbjct: 71 LLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+LI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + NP+ + V T I+ Y K LLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNKDKMTLLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ +D IIF N K ++ L G V + G++ Q+ R KIL F G + Sbjct: 249 TLIE-EDWPDRAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGDV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ + Sbjct: 308 DLLVATDVAARGLHIPLVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAVN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + IE+ IE + + D S+L Sbjct: 368 LPPIEEYIEHSIPVSDYDASAL 389 >gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC 49726] gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC 49726] Length = 446 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 142/359 (39%), Positives = 212/359 (59%), Gaps = 11/359 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG++ ++ + D G + IQ T+P+ L D+ G A+TG GKT F +P+L Sbjct: 11 FAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDR 70 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + PR LI+ PTRELA QV + + + + +A + GG P+E Q K L Sbjct: 71 VFDDADIAPLDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLASIYGGRPYEEQIKLL 130 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTR 178 +RG DV+I TPGR+LD RG L++ ++ I+V+DEAD MLD+GF+P I+ I +L Sbjct: 131 QRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAH 190 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF---VATYAQYSKKCALL 235 QT+LFSATM + +S F+ P I S A+ + H V A K ++ Sbjct: 191 QTMLFSATMPGAILNLSRQFMNKPVHIRAE---SEADEVTHETTRKVTFQAHRMDKVPVI 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +LQ+Q ++ IIF K++ L L ++GF V A+HG++ Q+SR K L F+ G Sbjct: 248 AHILQAQGRGRS-IIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGE 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ VP+ +IHRIGRTGRAG G A TLV +++ Sbjct: 307 VDILVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLVGYDEL 365 >gi|158514834|sp|A3LS22|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3 Length = 484 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 217/370 (58%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A+ + KPTPIQ + IP L+ D+ G+AQTG+GKTA+F +P+L Sbjct: 73 FSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 132 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L P RELA Q+ + F+ G + L+GG+ Q + L R Sbjct: 133 LWEAQTPYF---GLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRK 189 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGRI+DH K + ++ V+DEAD++LD+ F P + I +P R T Sbjct: 190 PHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTY 249 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT++++K+ L NP R+ V++ TA+ + + Y K L LL + Sbjct: 250 LFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLIQSMMLVSDGY--KNTYLIHLL-N 306 Query: 242 QDTMKNGIIFCNQKKNVVN---LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + K+ IIF + + LC L GFS +HG++ Q R+ L+ FK GT + Sbjct: 307 EFVGKSIIIFARTRAHTQRTSILCRIL---GFSAVPLHGDLTQAQRLGSLNKFKSGTANI 363 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARGLDIP V V N+D+P ++ Y+HR+GRT RAGR GK+ +LV + D++ Sbjct: 364 LIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYL 423 Query: 359 AIEKLIEKKV 368 IE+ I+KK+ Sbjct: 424 RIEQSIQKKL 433 >gi|268592936|ref|ZP_06127157.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131] gi|291311728|gb|EFE52181.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131] Length = 428 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 159/428 (37%), Positives = 239/428 (55%), Gaps = 32/428 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ G+ TPIQ T+P ++ DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LI+ PTRELA Q+ + ++ + L + L GG ++ Q K Sbjct: 71 LLTHPAIEGKKANQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 L+ G D+LI T GR++D+ +G + ++ ++++V+DEADRM D+GFI I+ I +P Sbjct: 131 LQNGVDILIGTTGRLIDYAKQGHVDLSAVQVVVLDEADRMYDLGFIKDIRWIFRRMPGAA 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R LLFSAT++ +++++ + NP+ +EV T I E F Y +K LL Sbjct: 191 ERLNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ + IIF N K ++ L G V + G++ Q+ R++IL F +G Sbjct: 248 QTLLE-EEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGH 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYSL 366 Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 ++ AIE+ I+ V N D LS L P R++ P P G RR Sbjct: 367 NLPAIEEYIQHSIPVSKYNSDALLSDLPAP-----------KRRHRPRP----GGQRRNS 411 Query: 412 NYSSQKSH 419 N SQ+ H Sbjct: 412 N--SQRRH 417 >gi|223944961|gb|ACN26564.1| unknown [Zea mays] Length = 734 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 25/373 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +++ L +++ A+ AGY KP+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPML+ Sbjct: 315 WSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 374 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ + K+ L V ++GG E Q Sbjct: 375 ITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQGF 434 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+ +G +++I TPGR+LD R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 435 KIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 494 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T + I Sbjct: 495 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 554 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + + S+K LQ++L K I+FCN KK L+K GF V +HG Sbjct: 555 VI--MVKESEKMPRLQKILTDLGD-KTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKS 611 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+A RG+DIPDV HV N+++P+ + Y HRIGRTGRAG Sbjct: 612 QDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAG 671 Query: 341 RHGKAFTLVAKED 353 + G A + + E+ Sbjct: 672 KKGVASSFLTYEN 684 >gi|156972680|ref|YP_001443587.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi ATCC BAA-1116] gi|189040086|sp|A7MXT4|RHLB_VIBHB RecName: Full=ATP-dependent RNA helicase rhlB gi|156524274|gb|ABU69360.1| hypothetical protein VIBHAR_00338 [Vibrio harveyi ATCC BAA-1116] Length = 437 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 145/382 (37%), Positives = 218/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P+V + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ + L AL GG ++ Q K Sbjct: 71 LLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIASTGLKAALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+LI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEDKMALLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ I+F N K ++ L G V + G++ Q+ R KIL F G + Sbjct: 249 TLIE-EEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ + Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + IE+ IE + + D S+L Sbjct: 368 LPPIEEYIEHAIPVSDYDASAL 389 >gi|330447222|ref|ZP_08310872.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491413|dbj|GAA05369.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 436 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 218/372 (58%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FA+LGL+P V+ + D G+ TPIQ +P++L HD+ G AQTGTGKT +F+ Sbjct: 11 FAELGLNPLVLKGLEDKGFHNCTPIQALALPVMLSGHDIAGQAQTGTGKTIAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + PR +I+ PTRELA Q+ ++ + L L GG P+E Q Sbjct: 71 LLETAAPAHRKTNQPRAIIMAPTRELAIQIYNDASSLIASTGLKAGLAYGGEPYEKQKAI 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176 L+ G D+LI T GRI+D + + + +N+I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LDEGVDILIGTCGRIIDFYKQRVIELNSIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPT 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R +LLFSAT++ +++++ + +P+ + V T I+ Y +K LLQ Sbjct: 191 ERLSLLFSATLSYRVKELAFEHMNSPESVIVEPEQKTGHRIQEELF--YPSNQEKMRLLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ + IIF N K ++ L G V + G++ Q+ R +IL F +G I Sbjct: 249 TLIE-EEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDI 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG G + + +E + Sbjct: 308 DILVATDVAARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGASGHSISFACEEYAIN 367 Query: 357 IDAIEKLIEKKV 368 + AIE IE + Sbjct: 368 LPAIETYIEHGI 379 >gi|325068259|ref|ZP_08126932.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20] Length = 507 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 143/412 (34%), Positives = 225/412 (54%), Gaps = 23/412 (5%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FAD G+ P++ C LDA G P PIQ T+P+ L+ D+ G A+TGTGKT F +P+L Sbjct: 72 FADFGVEPEI-CEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLM 130 Query: 62 IL----EKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 E+G P+ L++ PTRELA QVA+ + + + GG +E Sbjct: 131 DTLGPGEEGWDEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEP 190 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERGA+V++ TPGR++D RG L + ++ +V+DEAD MLD+GF+P ++ I + Sbjct: 191 QIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILART 250 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCA 233 R T+LFSATM + ++ ++ P I P T++ Y +S K Sbjct: 251 RADRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVE 310 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 ++ ++LQ++ + IIF K+ + L +GF+ A+HG++ Q +R + L F+ Sbjct: 311 VVSRILQAEGRGRT-IIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRN 369 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 + ++VA+D+AARG+D+ DV HV N+ P + Y+HRIGRTGRAG G A T V +D Sbjct: 370 NKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDD 429 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 + I K + ++ P+E ++H + + IP+K TG Sbjct: 430 VPRWRIIAKALGLPIE----------EPVETYHTSEHLFS--DLSIPEKVTG 469 >gi|332305039|ref|YP_004432890.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172368|gb|AEE21622.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 459 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ LGL P ++ + G+ + T IQ T+P +L DV A+TG+GKTA+F L +L Sbjct: 4 EFSSLGLEPALLDNLQSMGFSQMTDIQADTLPAILSGRDVVAKAKTGSGKTAAFGLALLH 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120 L+ R RV+ L++ PTRELA QVA + G+ +N+ V L GG P Q LE Sbjct: 64 NLDVKRFRVQ---ALVMCPTRELAEQVALEIRRLGRAIHNIKVLTLCGGTPMGPQIGSLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGRI+DH + +L ++ + LV+DEADRMLDMGF + + VP RQT Sbjct: 121 HGAHIIVGTPGRIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPAQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + + +S ++P + V + T + F A +K A L Q Sbjct: 181 LLFSATYPESIAAISGQVQKDPLEVTVESTHDTDSIQQVFFEVDDAHRTKATAALLSHYQ 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+FCN K + SL+ G SV A+HG+++QR R ++L F ++ ++V Sbjct: 241 PE----SAIVFCNTKIACQEVADSLQSLGVSVLALHGDLEQRERNQVLVRFANKSVSVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDI +V V ++ + E +IHRIGRTGRA G A TLVA +++ +AI Sbjct: 297 ATDVASRGLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEVARANAI 356 Query: 361 EKLIEKKVDW 370 E + K+ W Sbjct: 357 EDYQKAKLKW 366 >gi|303251782|ref|ZP_07337953.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249083|ref|ZP_07531090.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649212|gb|EFL79397.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854371|gb|EFM86567.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 445 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 8 MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ + + + L++A + GGI ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGIAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL ++ L NP +I+ + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + M+ I+F ++++V L +L K+G + G++ Q R + ++ KEG + + Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEGVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV +V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 366 KIKRYTEE 373 >gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18] gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18] Length = 553 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 137/349 (39%), Positives = 212/349 (60%), Gaps = 8/349 (2%) Query: 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84 TP+Q K IP +L+ HDV G+AQTGTGKTA+++LP+L+ L G +I+ PTREL Sbjct: 7 TPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVLSKLADGGYPESAINCVIMSPTREL 66 Query: 85 AAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 A Q+ + + N VA+ G G ++ + K L GADV+I TPGR + H + G Sbjct: 67 AQQIDQGMQGFAYYLNGVSCVAVYGGNDGNRYDQELKSLALGADVVIATPGRFISHISLG 126 Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200 + ++ + ++DEADRMLDMGF I I +P T QT++FSATM +++++++ L+ Sbjct: 127 NVDLSKVSFFILDEADRMLDMGFSDDIMTIAKKLPATCQTIMFSATMPAKIEELAKTLLK 186 Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260 NP I++ S AE I+ Y ++K +++ + ++ D +K IIF K+ V Sbjct: 187 NPVEIKLAV-SKPAEKIQQTAYVCYE--TQKMGIIKDIFKAGD-LKRVIIFSGSKQKVKQ 242 Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320 + SL + + +H ++DQ R ++ FK G I ++VA+D+ +RG+DI D+ V N+ Sbjct: 243 IAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVSRGIDIDDIAMVINY 302 Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 DVP+ AE+Y+HRIGRT RA R GKA T V ++DI IE +EK+V+ Sbjct: 303 DVPHDAEDYVHRIGRTARADRDGKAITFVNEDDIYFFQQIESFLEKEVE 351 >gi|254787436|ref|YP_003074865.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901] gi|237683460|gb|ACR10724.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901] Length = 461 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 140/348 (40%), Positives = 206/348 (59%), Gaps = 8/348 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P ++ + D GY TPIQ +P +LQ DV G A+TG+GKTA+F L +L Sbjct: 7 FSSLNLKPALLSNLSDLGYNTMTPIQAAALPAILQGSDVLGKAKTGSGKTATFGLGLLQR 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 LE R RV+ L+L PTRELA QVA K ++ +N+ + L GG F Q LE Sbjct: 67 LEVERFRVQ---ALVLCPTRELADQVAAELRKLARSIHNIKILTLCGGAAFGPQVGSLEH 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH +G L + +++ LV+DEADRMLDMGF + I L P RQTL Sbjct: 124 GAHIIVGTPGRVHDHLRKGNLQLGDLQTLVLDEADRMLDMGFAETLDAILDLAPKQRQTL 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + ++ +++ NP+ IEV S + + + ++ LL Q Sbjct: 184 LFSATYPEAIESMAKRVQHNPQVIEVEAVHSDHDIEQMFYKVPLENRTQVLGLLLQKYLP 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + M +FCN K+ ++ +L +QGFS A+HG++ Q+ R + L F + +MVA Sbjct: 244 ESCM----VFCNTKRETQDVADALLQQGFSAVALHGDMIQKDRDRTLVLFANQSASVMVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +D+AARGLDI +V V N+ + E ++HRIGRTGRAG+ G+A +++ Sbjct: 300 TDVAARGLDIAEVDLVVNYQLSRDPEVHVHRIGRTGRAGKRGRAVSML 347 >gi|226510036|ref|NP_001147911.1| ATP-dependent RNA helicase DDX23 [Zea mays] gi|195614524|gb|ACG29092.1| ATP-dependent RNA helicase DDX23 [Zea mays] Length = 736 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 25/373 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +++ L +++ A+ AGY KP+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPML+ Sbjct: 317 WSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 376 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ + K+ L V ++GG E Q Sbjct: 377 ITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQGF 436 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+ +G +++I TPGR+LD R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 437 KIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 496 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T + I Sbjct: 497 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 556 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + + S+K LQ++L K I+FCN KK L+K GF V +HG Sbjct: 557 VI--MVKESEKMPRLQKILTDLGD-KTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKS 613 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+A RG+DIPDV HV N+++P+ + Y HRIGRTGRAG Sbjct: 614 QDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAG 673 Query: 341 RHGKAFTLVAKED 353 + G A + + E+ Sbjct: 674 KKGVATSFLTYEN 686 >gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82] Length = 453 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 144/374 (38%), Positives = 215/374 (57%), Gaps = 16/374 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL ++ A+ GY PT IQ++++P L+ D+ G+A TG+GKTA+F LP+L Sbjct: 19 FKSLGLIDPLLEALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPILQK 78 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + P+ L +L PTRELA Q++ FE G A+++GG+ AQ L Sbjct: 79 LWED------PKGLFACVLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIAL 132 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR++ H K + +I+ LV+DEADR+LD+ F I I ++P R Sbjct: 133 AKRPHIVVATPGRLMQHLEETKGFSLRSIKFLVLDEADRLLDLDFGASIDKILKVIPKER 192 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATMT ++ K+ L NP RIEV++ T T+ ++ K A L L Sbjct: 193 TTYLFSATMTTKVAKLQRASLSNPVRIEVSSKYQTVSTLLQYYL--LMPLKDKDAYLIYL 250 Query: 239 LQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + S +N II F + L L GF +HG + Q R+ L FK G + Sbjct: 251 INS--LAQNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRR 308 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GK+ TLV + D++ + Sbjct: 309 VLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELV 368 Query: 358 DAIEKLIEKKVD-W 370 IE+++ KK++ W Sbjct: 369 QRIEQVVGKKMELW 382 >gi|301120023|ref|XP_002907739.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] gi|262106251|gb|EEY64303.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] Length = 639 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 141/361 (39%), Positives = 214/361 (59%), Gaps = 16/361 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FA+ L P+V+ + Y KPTP+Q +IP+ L D+ AQTG+GKT F+ P L Sbjct: 165 EFAEEQLGPEVIRNLELCKYSKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLA 224 Query: 62 ILEK-----------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 + + GR+R P LIL PTRELA+Q+ D +K+ + ++ GG Sbjct: 225 AMLRVGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIAPVVIYGGA 284 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 Q ++LERG D+L+ TPGR++D RG++ ++ I L++DEADRMLDMGF P I+ I Sbjct: 285 EVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRI 344 Query: 171 TSL--VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228 +P RQT +FSAT E+Q+++ +FL++ + V S ++ ++ V QY Sbjct: 345 VEQEDMPRERQTFMFSATFPCEIQRLASDFLRDYIFLTVGRVGSASKDVKQT-VEYIEQY 403 Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 K+ L++ L Q QD + ++F K+ L L ++GF +IHG+ QR R + L Sbjct: 404 DKEDYLVRFLNQVQDGLI--LVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQAL 461 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 ++FK G ++VA+D+AARGLDI V V NFD+PN ++Y+HRIGRTGR G G A ++ Sbjct: 462 ASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSM 521 Query: 349 V 349 + Sbjct: 522 M 522 >gi|254508548|ref|ZP_05120665.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16] gi|219548490|gb|EED25498.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16] Length = 433 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 145/382 (37%), Positives = 221/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADLGL P++ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLGLHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ E + + AL GG ++ Q K Sbjct: 71 LLTTSEHEGRKPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G DVLI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P + Sbjct: 131 LEDGVDVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 + L LFSAT++ +Q+++ + NP+ + V T I+ Y K ALLQ Sbjct: 191 ERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELF--YPSNEHKMALLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ + IIF N K ++ L G V + G++ Q+ R +IL F +G + Sbjct: 249 TLIE-EEWPERAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ + Sbjct: 308 DLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAIN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + IE+ IE + + D S+L Sbjct: 368 LPPIEEYIEHTIPVSDYDPSAL 389 >gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus] gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus] Length = 453 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 221/368 (60%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ PT IQ++ IP+ LQ D+ G+A+TG+GKT +F LP+L Sbjct: 27 FKDLGVT-DVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 85 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L R+ L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 86 ALLDAPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAK 142 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 143 KPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKT 202 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K + L +L Sbjct: 203 FLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDSYLVYIL- 259 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK +++ Sbjct: 260 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILL 319 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GK+ T V + D++ I Sbjct: 320 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 379 Query: 361 EKLIEKKV 368 E LI KK+ Sbjct: 380 EHLIGKKL 387 >gi|322614908|gb|EFY11833.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619348|gb|EFY16228.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623160|gb|EFY20002.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628449|gb|EFY25237.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634857|gb|EFY31588.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638578|gb|EFY35273.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640887|gb|EFY37535.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645384|gb|EFY41912.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651731|gb|EFY48103.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654369|gb|EFY50691.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661210|gb|EFY57436.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662662|gb|EFY58869.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667727|gb|EFY63887.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671861|gb|EFY67982.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677094|gb|EFY73158.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680244|gb|EFY76283.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685327|gb|EFY81323.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194310|gb|EFZ79506.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199386|gb|EFZ84480.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205860|gb|EFZ90823.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217187|gb|EGA01908.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323227265|gb|EGA11435.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232049|gb|EGA16156.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234576|gb|EGA18663.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238029|gb|EGA22088.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243370|gb|EGA27389.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246177|gb|EGA30162.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253678|gb|EGA37505.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259111|gb|EGA42757.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260421|gb|EGA44034.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266491|gb|EGA49978.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271215|gb|EGA54642.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 457 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 212/355 (59%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT D + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSVH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|301753949|ref|XP_002912858.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Ailuropoda melanoleuca] Length = 477 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P T E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q+ QD ++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 IQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I+KK++ L+ + + + L ++++ R+ I ++ FD +K+ Sbjct: 359 LVHAIEEQIKKKLEELSVEEAKVLQILTQVNV-----VRRECEIKLEAANFDEKKE 409 >gi|238023679|ref|YP_002907911.1| ATP-dependent RNA helicase DbpA [Burkholderia glumae BGR1] gi|237878344|gb|ACR30676.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1] Length = 465 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 145/376 (38%), Positives = 207/376 (55%), Gaps = 16/376 (4%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TPIQ ++P+ L D+ A+TG+GKTA+F L +L L+ R V+ +IL Sbjct: 27 GYLEMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDARRFEVQ---AMILC 83 Query: 80 PTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N+ V L GG P Q LE GA +++ TPGRI+DH Sbjct: 84 PTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGRIMDHLE 143 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG L + + LV+DEADRMLDMGF I + P R T+LFSAT + + K+S F Sbjct: 144 RGSLALGALNTLVLDEADRMLDMGFFDDIATVVRQCPTERLTMLFSATYPEGITKLSRQF 203 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 L+NPK I + + + + T Q LL + T I FCN K+ Sbjct: 204 LRNPKEIRLEETHDAGKIRQRFYEVTEDQRLHAVGLLLNHYRPAST----IAFCNTKQQC 259 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +L L QGF A+HG ++QR R ++L F + ++VA+D+AARGLDI + V Sbjct: 260 RDLLDVLTAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI 319 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL------- 371 N DV E ++HRIGRTGRA + G A +L + ++ + AIE+ ++++W Sbjct: 320 NVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIEQAQGRELEWQPLAALVP 379 Query: 372 NGDLSSLNPPLEKIDI 387 GD L PP+E + I Sbjct: 380 TGD-GPLLPPMETLQI 394 >gi|91793881|ref|YP_563532.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91715883|gb|ABE55809.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 426 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 142/365 (38%), Positives = 215/365 (58%), Gaps = 10/365 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA+ GL ++ +++ Y PTPIQ +TI +L D+ A TG+GKTA+F LP+L Sbjct: 9 FAEFGLHNALLSRLVELDYQVPTPIQAQTIGSILAGKDLLAGANTGSGKTAAFALPLLHA 68 Query: 62 ILEKGRARVRM--PRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117 +L K ++ R L+L PTRELA QVAD+F+ Y + N + V GG+ Q Sbjct: 69 LLSKPLKPLKGNGVRALVLVPTRELAKQVADSFKSYAVHSNGAIKVVAAFGGVSVNTQML 128 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GAD+++ TPGR+LD + L + ++ LV+DEADRML +GF I I L+P Sbjct: 129 ALRGGADIVVATPGRLLDLLSSNALKLADVSTLVLDEADRMLSLGFTDEIGQILGLLPKK 188 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSAT +E++++++ L +P I++ P S+ ++ KK ALL Sbjct: 189 KQTLLFSATFPEEVRQLTDALLNSPLEIQLQNPESST-LVQRVMTVNR---EKKTALLAH 244 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ + +IF K + +L L K+G + HG+ Q +R ++L FK G IQ Sbjct: 245 LL-NEHQWRQVLIFVGAKNSCNHLAQKLAKRGITAEVFHGDKAQGARSRVLEGFKAGDIQ 303 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A +L++ ++ H Sbjct: 304 VLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLLSHDEYHHF 363 Query: 358 DAIEK 362 IEK Sbjct: 364 TVIEK 368 >gi|311694990|gb|ADP97863.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15] Length = 427 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 145/395 (36%), Positives = 229/395 (57%), Gaps = 17/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L +++ A+ G+ TPIQ +T+P L D+ G AQTGTGKTA+F++ + Sbjct: 13 FSDLNLDKRLLDAITAIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAIQS 72 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L EK R PR L L PTRELA Q+A + E+ ++ V ++GG+ ++ Q Sbjct: 73 LLETPIPEKERF-ASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVGGMNYDKQR 131 Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLV 174 +L+ D+L+ TPGR++D + ++ ++IL++DEADRMLDMGFIP ++ I Sbjct: 132 DQLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCT 191 Query: 175 P-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 P RQTLLFSAT ++ ++ + N + +E+ TAE +E +K Sbjct: 192 PKEERQTLLFSATFNQDVLNLASMWTSNAEFVEIEPEQKTAERVEQTVY--LVGDDEKLP 249 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 +L L+ + K ++F N++ +L L QG V + G I Q R+K L FK+ Sbjct: 250 VLVNFLKRPEVEK-ALVFANRRDQCRDLEEDLRNQGVKVALMSGEIAQNKRLKTLDQFKK 308 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G+IQ++VA+D+A RG+ + V HVFN+++P+ AE+Y+HRIGRTGRAG+HG + + ++D Sbjct: 309 GSIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSISFAGEDD 368 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSL----NPPLEK 384 + AIE I +K+ D + + NPP+ + Sbjct: 369 SFALPAIETYISQKLKTAVPDEALMAPMDNPPITR 403 >gi|329767883|ref|ZP_08259397.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341] gi|328838671|gb|EGF88270.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341] Length = 486 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 137/359 (38%), Positives = 217/359 (60%), Gaps = 7/359 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+S + V ++ + ++ PT IQ +TIP VL D+ AQTG+GKT +F +P++ Sbjct: 4 FEELGVSQETVQSLRNMNFISPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPLVDT 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + K ++LIL PTRELA QV + + L V+++ GG E Q + L++ Sbjct: 64 VRKSD----QLQSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQIQDLKKR 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH NR + ++++ LV+DEAD ML+MGFI ++ I S + QTLL Sbjct: 120 PQIIVGTPGRVIDHINRRTIKLDSLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTLL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++S++F+++ K I+ + I AT A+ ++K L L Q Sbjct: 180 FSATMPKTIMELSKDFMKDYKLIKTISDEDLKPDITEY--ATIARENEKLETLIGFLDVQ 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G+ +HG+I Q R++IL FK ++Q++VA+ Sbjct: 238 NP-NLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 D+AARG+DI DV HV+NFD+P E+Y HRIGRTGRAG+ G A T + ++ ++ IE Sbjct: 297 DVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEMPYLKDIE 355 >gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus PAl 5] gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus PAl 5] Length = 390 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 201/352 (57%), Gaps = 9/352 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F LGL P++V V AGY P+PIQ IP + DV +A+TGTGKTA+F LP++ Sbjct: 16 FDGLGLDPRIVANVARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIHR 75 Query: 61 TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + G A P R LIL PTRELA+Q A + LTVAL IGG P + Q Sbjct: 76 LLTGAGDAAPSGPPGHVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQA 135 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L G D+L+ TPGR+LDH + +++ LV+DEADRMLD+GF+ ++ I + +P Sbjct: 136 RALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLPV 195 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 QTLLFSATM+ + + L P +I ++ I + T A ++K A L Sbjct: 196 RHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPA--ARKAASLL 253 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ + + ++F K+ L +L G + A+HG+ Q R + L +F+ G + Sbjct: 254 AVLRREAGGRT-MVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRL 312 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 ++VA+D+ ARG+D+ V V NFD+P + E YIHRIGRT RAGR G A +L Sbjct: 313 LVLVATDVMARGIDVEGVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSL 364 >gi|308272111|emb|CBX28719.1| DEAD-box ATP-dependent RNA helicase cshA [uncultured Desulfobacterium sp.] Length = 548 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 218/362 (60%), Gaps = 9/362 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGI--AQTGTGKTASFVLPML 60 F DLGLS KV+ A+ G+ +PT IQ+ TIP V+QR D I AQTGTGKTA+F LP++ Sbjct: 14 FKDLGLSAKVLDAINKKGFEEPTAIQVMTIP-VMQRDDTNIIVQAQTGTGKTAAFGLPLV 72 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ G + M + LIL PTRELA QV++ N ++ +A + GG + Q ++L+ Sbjct: 73 EMVSTGSS---MVQALILVPTRELAIQVSEEINSLRGNKDIVIAPIYGGQSIDQQLRRLQ 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G +++ TPGR++DH NR L + IE L++DEAD ML+MGFI I+ I ++T Sbjct: 130 KGVHIVVGTPGRVIDHLNRKTLKLEKIEHLILDEADEMLNMGFIEDIEEIMKHTNPDKRT 189 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++ ++ +++ + ++V T E + A K L +++ Sbjct: 190 LLFSATIPQRIKDLAHKYMKGYEFLKVKKEQLTTNLTEQIYFEVKAH--DKFEALCRIID 247 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D G+IFC K +V ++ L +G+ AIHG+I Q R + L FK+ + ++V Sbjct: 248 IKDGF-YGLIFCRTKSDVDSVATHLMDRGYDAEAIHGDISQAQRERTLEKFKKQRVNILV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+ +P+ E Y+HRIGRTGRAG G A T + + K + I Sbjct: 307 ATDVAARGIDVNNLTHVINYSLPHDTEAYVHRIGRTGRAGNVGTAITFITPSEYKGLMFI 366 Query: 361 EK 362 ++ Sbjct: 367 QR 368 >gi|183981369|ref|YP_001849660.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M] gi|183174695|gb|ACC39805.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M] Length = 517 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 145/377 (38%), Positives = 219/377 (58%), Gaps = 18/377 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ ++V A+ + P IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 15 FAELGVRDEIVRALGERDIECPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 74 Query: 63 LEKG---RARVRMPRTLILEPTRELAAQVADNFE---KY-------GKNYNLTVALLIGG 109 + G R PR L++ PTREL QV ++ KY G L+V + GG Sbjct: 75 VSSGTGVRPLTGAPRALVVVPTRELCLQVTEDLAVAAKYLTATTETGDQRPLSVVSIYGG 134 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 +E Q + L GADV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ Sbjct: 135 RAYEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIER 194 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQ 227 I +P RQ++LFSATM D + ++ F+ P I P S A +T E +A Sbjct: 195 ILRQIPADRQSMLFSATMPDPIITLARTFMIQPTHIRAEAPHSLAVHDTTEQFVYRAHAL 254 Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 K L+ ++LQ+++ +IF K+ + L ++GF+V A+HG++ Q +R K Sbjct: 255 --DKVELVTRVLQARERGAT-MIFTRTKRTAQKVADELNERGFAVGAVHGDLGQVAREKA 311 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L +F+ G++ ++VA+D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G A T Sbjct: 312 LKSFRSGSVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVT 371 Query: 348 LVAKEDIKHIDAIEKLI 364 LV +++ I+K + Sbjct: 372 LVDWDELPRWTMIDKAL 388 >gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille] gi|151281157|gb|ABR89567.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 478 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 214/371 (57%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LSP ++ + GY + TPIQ +++P++L+ D+ A+TG+GKTA+F + +L Sbjct: 21 FSSLALSPAMLSNLDSLGYREMTPIQAQSLPVILELRDLIAQAKTGSGKTAAFGIGLLQK 80 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L V+ L++ PTRELA QV++ + + N+ V L GG P Q LE Sbjct: 81 LNPTWFAVQ---ALVICPTRELADQVSNELRRLARATENIKVLTLCGGAPMRPQIASLEH 137 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI DH +R + ++ ++ LV+DEADRM+DMGF I I S P RQTL Sbjct: 138 GAHIVVGTPGRIRDHISRETINLSKVQTLVLDEADRMVDMGFYEEIAGIVSACPTRRQTL 197 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D++++ S FL++P I+V ++ IE F A Y + A + LL+ Sbjct: 198 LFSATYPDDIRRASAEFLRDPVEIKVEAQHDDSQ-IEQRFYAV--DYDDRNAAVATLLKH 254 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + FCN K + L L QGFS A++G ++QR R +IL F + ++VA Sbjct: 255 YRPVST-LAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVA 313 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI +G V N DV E +IHRIGRTGR G A +L A + K + IE Sbjct: 314 TDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIE 373 Query: 362 KLIEKKVDWLN 372 + K V W + Sbjct: 374 EYQNKPVQWFD 384 >gi|18410973|ref|NP_567067.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] gi|42572719|ref|NP_974455.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] gi|79315530|ref|NP_001030884.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] gi|75329861|sp|Q8LA13|RH11_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 11 gi|21593670|gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|332646270|gb|AEE79791.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana] gi|332646271|gb|AEE79792.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana] gi|332646272|gb|AEE79793.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana] Length = 612 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/387 (36%), Positives = 215/387 (55%), Gaps = 17/387 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD+ L + + YV+PTP+Q IP++L D+ AQTG+GKTA+F P+++ Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISG 212 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + K + +R P +IL PTRELA Q+ D +K+ + V + GG P Q Sbjct: 213 IMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQ 272 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG D+L+ TPGR+ D R ++ M I L +DEADRMLDMGF P I+ I + Sbjct: 273 LRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 332 Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYS 229 RQT+LFSAT ++Q+++ +F+ N + V S+ + I FV + S Sbjct: 333 MPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRS 392 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 LL ++QD ++F K+ L + L F +IHG+ Q+ R L Sbjct: 393 HLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALR 452 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G A Sbjct: 453 SFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 512 Query: 350 AKEDIKHIDAIEKLIEKK----VDWLN 372 + + + ++ +L+++ +WL Sbjct: 513 NENNAQLARSLAELMQEANQEVPEWLT 539 >gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase domain-containing protein [Truepera radiovictrix DSM 17093] gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM 17093] Length = 526 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 211/367 (57%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L + A+ G+ PT IQ T+P L DV G+A+TGTGKT +F LP+ Sbjct: 2 FHDLPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIANR 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE AR R PR LIL PTRELA QVA E +N V + GG + Q L+RG Sbjct: 62 LEPESARGRAPRALILTPTRELALQVAGELEWLAPEHN--VVTVYGGTGYGKQASDLKRG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 AD+++ TPGR +D++ +G L ++ +E+ V+DEAD ML+ GF ++ + + P RQTLL Sbjct: 120 ADIVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATPQERQTLL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ + ++ L++P R V ++ E++ + VA A + + +L +L Sbjct: 180 FSATLPRWAESLAARHLRDPLRANV----TSDESVSYDEVAIEAPLASRLGVLSDVLHVH 235 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 T + I+F K V L +L G A+HG+++Q R ++L F+ + ++VA+ Sbjct: 236 GTGAS-IVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLVAT 294 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP+V V ++ P + E Y HR GRTGRAGR G L + + + + +E+ Sbjct: 295 DVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRAGTVVLLYSPRERRELALLER 354 Query: 363 LIEKKVD 369 I ++++ Sbjct: 355 AIARRIE 361 >gi|221133951|ref|ZP_03560256.1| ATP-dependent RNA helicase RhlB [Glaciecola sp. HTCC2999] Length = 426 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 138/385 (35%), Positives = 227/385 (58%), Gaps = 9/385 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL + ++ A+ +A + TPIQ ++P ++ D+ G AQTGTGKT +F++ Sbjct: 11 FSDLKIHQSIIDALNEANFEYCTPIQALSLPPLIDELDIAGQAQTGTGKTIAFLVATFHY 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + P+ +I+ PTRELA Q+ ++ E K+ LT+ L+ GG +E Q + L G Sbjct: 71 LLTHKNSEKGPKAMIMAPTRELAVQIYNDAELLSKHTGLTLGLIYGGEGYEDQRQTLTNG 130 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQT 180 D++I T GRILD++ +G +N++++ V+DEADRM D+GFI I+ + +P R + Sbjct: 131 VDIIIGTTGRILDYYKQGIFSLNHLQVAVLDEADRMFDLGFIKDIRYLFRRMPNATERLS 190 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT++ +Q+++ + NP +++ TA ++ Y K LL LL+ Sbjct: 191 MLFSATLSYRVQELAYEHMNNPTHVQIEPEKKTATRVQEELF--YPSDDDKIRLLLTLLE 248 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ K ++F N K + + L G V + G++ Q+ RM I+ F +G + ++V Sbjct: 249 NEWPEK-AVVFANTKFSCETVAAWLMADGHRVGLLSGDVPQKKRMSIMEGFAKGKLDILV 307 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGL I V HVFNFD+P+ AE+Y+HRIGRTGRAG+ G A + ++ ++ I Sbjct: 308 ATDVAARGLHIEKVTHVFNFDLPDDAEDYVHRIGRTGRAGKSGHAISFACEKYALNLPEI 367 Query: 361 EKLIEKKV---DWLNGD-LSSLNPP 381 E IE + D+ +G L+ L PP Sbjct: 368 EAYIEHSIPVTDYDSGALLTDLTPP 392 >gi|33861657|ref|NP_893218.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634234|emb|CAE19560.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 592 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 211/368 (57%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G + ++ ++ GY PTPIQ IP ++ D+ G AQTGTGKTA+F LP++ Sbjct: 52 FACFGFNKLILNSLESKGYKTPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 111 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121 LE + + L++ PTRELA QVAD+F+ Y ++ NL + GG F Q L+R Sbjct: 112 LENNKES--NAKVLVMTPTRELATQVADSFKSYSAESTNLRTLAIYGGTDFRNQISSLKR 169 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGRI+DH +G +NNI LV+DEAD ML MGF+ I+ I +P +Q + Sbjct: 170 KTDIVVGTPGRIMDHIRQGTFKINNISCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMV 229 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +E++ +++ +L P I + + + I ++ Q K L+++L+ Sbjct: 230 LFSATMPNEIRNIAKKYLNEPAEILIKSVKQETQLITQKYIN--VQRHHKLDALKRILEI 287 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T + IIF K ++ +LE G SV ++G+I Q R + K+G I ++VA Sbjct: 288 --TNEGVIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 345 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D P E Y HRIGRTGRAGR G+A V + + + +E Sbjct: 346 TDVAARGLDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLE 405 Query: 362 KLIEKKVD 369 K++ Sbjct: 406 NSTRNKIE 413 >gi|312881437|ref|ZP_07741232.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC BAA-2122] gi|309370919|gb|EFP98376.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC BAA-2122] Length = 433 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 143/386 (37%), Positives = 222/386 (57%), Gaps = 9/386 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FADL L P++V +++ G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLNLHPQIVTGLMNKGFNFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + E +V PR +I+ PTRELA Q+ ++ + ++ + AL GG +E Q K Sbjct: 71 LLNVPEHTGRKVTQPRAIIMAPTRELAIQIYNDAKPLRESTGIRTALAYGGESYEKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 LE G D+LI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 131 LEDGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R +LFSAT++ +Q+++ + NP+ + V T I+ Y K LLQ Sbjct: 191 DRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMPLLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ IIF N K ++ L V + G++ Q+ R +IL F G + Sbjct: 249 TLIE-EEWPDRAIIFANTKHKCESIWGHLAADEHRVGLLTGDVPQKKRERILEQFTRGDV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + ++ + Sbjct: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSVSFACEDYAVN 367 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPL 382 + AIE+ IE + D S+L P L Sbjct: 368 LPAIEEYIEHTIPVSEYDPSALIPDL 393 >gi|170731293|ref|YP_001776726.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M12] gi|167966086|gb|ACA13096.1| ATP-dependent RNA helicase [Xylella fastidiosa M12] Length = 544 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 139/375 (37%), Positives = 224/375 (59%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F+ L P ++ + AG+ TPIQ T+P+ L D+ G AQTGTGKT +F++ ++ Sbjct: 10 LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGKTLAFLVVVV 69 Query: 61 TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L V PR LIL PTRELA Q+ ++ K+G N L AL+ GG+ ++ Q Sbjct: 70 NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +GADV+I TPGR++D+ + +++ + EI V+DEADRM D+GFI I+ I +P Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +RQTLLFSAT++ + +++ ++ P+++ T S T + + +K Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIY--FPAEEEKIP 247 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + M+ I+F N K V + +L++ G+ V + G++ QR R +L+ F++ Sbjct: 248 LLLGLLSRSEGMRT-IVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 306 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 307 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 366 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 367 AMSLPDIEAYIEQKI 381 >gi|149191365|ref|ZP_01869617.1| ATP-dependent RNA helicase [Vibrio shilonii AK1] gi|148834782|gb|EDL51767.1| ATP-dependent RNA helicase [Vibrio shilonii AK1] Length = 430 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 146/383 (38%), Positives = 223/383 (58%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FA+L L P+++ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FAELDLQPQIIEGLEKKGFEYCTPIQALALPVLLAGRDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT E + PR +I+ PTRELA Q+ ++ + ++ L AL GG ++ Q K Sbjct: 71 LLTTPEHDGRKPNQPRAIIMAPTRELAIQIQNDAKPLIESTGLKTALAYGGDSYDKQLAK 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 LE G D+LI T GRI+D + + +NNI+ +V+DEADRM D+GFI I+ + +P Sbjct: 131 LEEGVDILIGTCGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + NP+ + V T I E F Y ++K ALL Sbjct: 191 DRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIKEELF---YPSNNEKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R KIL F G Sbjct: 248 QTLVE-EEWPDRAIIFANTKHKCEKVWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE+ IE ++ + D S+L Sbjct: 367 NLPAIEEYIEHQIPVSDYDSSAL 389 >gi|124360402|gb|ABN08415.1| Helicase, C-terminal [Medicago truncatula] Length = 499 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 144/424 (33%), Positives = 225/424 (53%), Gaps = 33/424 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+D V+ V AG+V+PTPIQ + P+ L+ D+ GIA+TG+GKT +++LP + Sbjct: 97 FSDAAFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 156 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 IL+ G P L+L PTRELA Q+ K+G + + + GG+P Q Sbjct: 157 VNAQPILDPGDG----PIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQV 212 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L++G +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 213 RDLQKGVEIIIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRP 272 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCA 233 RQTL +SAT E+++++ FL NP ++ + + A +V + Y K Sbjct: 273 DRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVK 332 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ ++ + IF + KK + L G+ +IHG+ Q R +LS FK Sbjct: 333 LLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKS 388 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +M A+D+AARGLD+ DV +V N+D P E+Y+HRIGRTGRAG G A+T + Sbjct: 389 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 448 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 + + ++E+ ++ +L+++ R P P S GF R K++ Sbjct: 449 ARFAKELISILEEAGQRVSSELAAMG--------------RGAPPPP--SGGFRDRGKSF 492 Query: 414 SSQK 417 S + Sbjct: 493 GSGR 496 >gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 557 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 140/411 (34%), Positives = 224/411 (54%), Gaps = 21/411 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+ P++ A+ G P PIQ T+P+ L+ D+ G A+TGTGKT F +P+L Sbjct: 68 FADFGVEPEICEALAAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMD 127 Query: 63 L----EKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 E+G P+ L++ PTRELA QVA+ + + + GG +E Q Sbjct: 128 TLGPGEEGWDEDPASGSPQGLVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQ 187 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + LERGA+V++ TPGR++D +RG L + ++ +V+DEAD MLD+GF+P ++ I + Sbjct: 188 IEDLERGAEVVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKILARTR 247 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ ++ P I P T++ Y +S K + Sbjct: 248 ADRHTMLFSATMPGAVVTLARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEV 307 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + IIF K+ + L +GF+ A+HG++ Q +R + L F+ Sbjct: 308 VARILQAEGRGRT-IIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRND 366 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ P + Y+HRIGRTGRAG G A T V +D+ Sbjct: 367 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDDV 426 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 I K + ++ P+E ++H + + IP+K TG Sbjct: 427 PRWRIIAKALGLPIE----------EPVETYHTSEHLFS--DLSIPEKVTG 465 >gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing protein, putative [Candida dubliniensis CD36] gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36] Length = 499 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 145/395 (36%), Positives = 224/395 (56%), Gaps = 16/395 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P ++ ++ + KPTPIQ + IP L+ D+ G+AQTG+GKTA+F +P+L Sbjct: 88 FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 147 Query: 63 LEKGRARVRMPR-TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + P L+L PTRELA Q+ D F+ G + L + ++GG+ Q + L R Sbjct: 148 L----WHAQQPYFALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR 203 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGRI+DH K + N++ LV+DEADR+LDM F P + I ++P R T Sbjct: 204 KPHIIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRIT 263 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT++++K+ L NP ++ V++ TA+ + + Y K +L LL Sbjct: 264 YLFSATMTNKIEKLQRASLHNPVKVSVSSKYQTADNLIQSMMLVNDGY--KNTILIHLL- 320 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ K+ I+F + GF+ +HG + Q R+ L+ FK ++V Sbjct: 321 NEFIGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 380 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP V V N+D+P ++ YIHR+GRT RAGR GK+ +L+ + D++ I Sbjct: 381 ATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 440 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 E ++ KK+ + PP E +D A H H K Sbjct: 441 ENVLGKKLPKED------KPPKEILD-ALHVHVDK 468 >gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo sapiens] Length = 828 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 145 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 204 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 205 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 260 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 261 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 320 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 321 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 380 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 381 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 439 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 440 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 496 >gi|224094640|ref|XP_002195464.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Taeniopygia guttata] Length = 451 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 223/369 (60%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ PT IQI+ IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 26 FKDLGVT-DVLCKACDQLGWKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQ 84 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-TVALLIGGIPFEAQNKKLE 120 L + R+ L+L PTRELA Q+++ FE G + + T A+++GGI +Q+ L Sbjct: 85 ALLETPQRLF---ALVLTPTRELAFQISEQFEALGSSIGVQTSAVIVGGIDTMSQSLALA 141 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + V+I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+ Sbjct: 142 KKPHVIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK 201 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT ++QK+ L+NP + V++ T E ++ ++ +++ K + L +L Sbjct: 202 TFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDSYLVYIL 259 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N L GF+ +HG + Q R+ L+ FK ++ Sbjct: 260 -NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 318 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GK+ T V + D++ Sbjct: 319 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 378 Query: 360 IEKLIEKKV 368 IE LI KK+ Sbjct: 379 IEHLIGKKL 387 >gi|167623474|ref|YP_001673768.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167353496|gb|ABZ76109.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 442 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/371 (38%), Positives = 219/371 (59%), Gaps = 14/371 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF LGL P+++ + Y PT IQ TIP VL DV G A TG+GKTA+F LP++ Sbjct: 24 DFTQLGLMPELLETLKLLSYTTPTAIQSHTIPAVLNGKDVLGGAITGSGKTAAFALPIIQ 83 Query: 62 ILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQN 116 + + + R + +LIL PTRELA QVAD+F +Y + NL + GG+ Q Sbjct: 84 KIAQAKPRAKEGNYVSSLILVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNTQM 143 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L GAD+++ TPGR++D + L ++ LV+DEADRML +GF + + + +P Sbjct: 144 LSLRGGADIVVATPGRLIDLISSNALKLDKTTTLVLDEADRMLSLGFTEELNELLAKLPK 203 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 T+QTLLFSAT +E+++++++ L NP +EV SS T+ + ++K ALL Sbjct: 204 TKQTLLFSATFPEEVRELTDSLLNNP--VEVQLQSSEESTLVQRVITV--NRNRKTALLA 259 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + +IF + K + L LE G + H + Q +R ++L FK G I Sbjct: 260 ELIK-DNQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEGFKSGEI 318 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++A+D+AARG+DI + V NF++P +Y+HRIGR+GRAG G A +L++ ++ +H Sbjct: 319 SVLIATDIAARGIDIEKLPIVINFELPRSPADYMHRIGRSGRAGEAGLAMSLISHDEYQH 378 Query: 357 IDAIEKLIEKK 367 KLIEKK Sbjct: 379 F----KLIEKK 385 >gi|297704172|ref|XP_002828993.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Pongo abelii] Length = 483 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 233/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAHR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P ST E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q QD ++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 IQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I+KK++ + + + + L ++++ R+ I ++ FD +K+ Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409 >gi|237731652|ref|ZP_04562133.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2] gi|226907191|gb|EEH93109.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2] Length = 457 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 216/365 (59%), Gaps = 8/365 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P +L DV A+TG+GKTA+F L +L ++ A + ++L+L Sbjct: 22 GYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHID---AALFQTQSLVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 +G + ++ + LV+DEADRMLDMGF I ++ P +RQTLLFSAT + + +S Sbjct: 139 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 QNP IE++T + IE F T + K LLQ+LL SQ + ++FCN KK+ Sbjct: 199 QQNPLTIEIDTVDAL-PAIEQQFFETSSH--GKIPLLQKLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S ++HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 NF++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WL + Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWLTAPANGS 374 Query: 379 NPPLE 383 PLE Sbjct: 375 ILPLE 379 >gi|290477139|ref|YP_003470054.1| putative ATP-dependent helicase with nucleoside triP hydrolase domain [Xenorhabdus bovienii SS-2004] gi|289176487|emb|CBJ83296.1| putative ATP-dependent helicase with nucleoside triP hydrolase domain [Xenorhabdus bovienii SS-2004] Length = 427 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 144/390 (36%), Positives = 226/390 (57%), Gaps = 11/390 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F+D L PKV+ A+ G+ TPIQ T+P ++ DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLTSTFHY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR LI+ PTRELA Q+ + E+ + L + L GG ++ Q K Sbjct: 71 LLTHPAAADHKTNQPRALIMAPTRELAVQIYSDAEELAEATGLKMGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 LE G D++I T GR++D+ +G + +N ++++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDIVIGTTGRLIDYTKQGYVNLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPVAA 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R LLFSAT++ +++++ + +P+ +EV T I+ Y +K LLQ Sbjct: 191 QRMNLLFSATLSYRVRELAFEQMNSPEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL F G + Sbjct: 249 TLLE-EEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNL 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E + Sbjct: 308 DILVATDVAARGLHIPFVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALN 367 Query: 357 IDAIEKLIEKK--VDWLNGDLSSLNPPLEK 384 + +IE+ I+ + V N D ++ P+ K Sbjct: 368 LTSIEEYIQHQIPVSKYNSDALLMDLPVPK 397 >gi|224068070|ref|XP_002188600.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Taeniopygia guttata] Length = 1031 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 151/446 (33%), Positives = 246/446 (55%), Gaps = 23/446 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ A+ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRALEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 V RQT++FSAT ++ ++ L P ++V S +E V + +K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQ-HVIVIEEENKFLK 608 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ L Q+ + IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 609 LLELLGHYQEK-GSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKN 667 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 668 GTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQ 727 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 ++ I K +E L+G+ + P LEK+ + + + +KS+GF + + Sbjct: 728 ARYAGDIIKALE-----LSGN--PIPPDLEKLWADFKDQQKAEGKLIKKSSGFSGKGFKF 780 Query: 414 SSQKSHIPLKESEKISKLQQDIQEND 439 + + E +K+ K +Q++D Sbjct: 781 DETEQALA-NERKKLQKAALGLQDSD 805 >gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341] gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341] Length = 421 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 214/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADL L P ++ A+ + G+ +PT +Q + IP L DV A TGTGKTA+F +P L Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQY 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QVA+ + KN L + + GG+ ++ L Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++ + + L++P ++ P + I + K LL+++L Sbjct: 185 LFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWY-HRADDMPHKVELLKKILT 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + I+F ++ + +L LEK I G + Q R ++ F+EG + +++ Sbjct: 244 EQ--AERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGDVNILL 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PD+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV D + + Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361 Query: 361 EKLIEKKV 368 E+ I+++V Sbjct: 362 ERYIKEEV 369 >gi|256830240|ref|YP_003158968.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579416|gb|ACU90552.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum DSM 4028] Length = 530 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 215/363 (59%), Gaps = 11/363 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F++LGLS + A+ G+ +PTPIQIKTIP VL D+ AQTGTGKTA+F LP+L Sbjct: 4 FSELGLSELSIQALSRKGFEEPTPIQIKTIPAVLTGDSDIVAQAQTGTGKTAAFGLPLLE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ VR + L+L PTRELA QVA+ + VA + GG E Q + L++ Sbjct: 64 MLDPD---VRTVQALVLAPTRELAIQVAEEVNSLRGGRTINVAPIYGGQSMEIQLRSLKK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G V++ TPGR+LDH RG L ++ I L++DEAD ML+MGF+ + I ++T+ Sbjct: 121 GVSVVVGTPGRVLDHLRRGSLNLSGIRFLILDEADEMLNMGFLDDVLEIMEQTATEKRTM 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 LFSATM E+ ++++ ++ + + I+ + TA + + VA ++ C ++ Sbjct: 181 LFSATMPPEILRIAKKYMGDYQIIKAVSEQLTATQTDQIYFEVAMSDKFEALCRII---- 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + G++F K + + L ++G+ +HG++ Q R K+L FK+ + ++ Sbjct: 237 -DMEPDFYGLVFTRTKIDADAVSQRLMERGYEADTLHGDMSQSLREKMLIKFKKKLVTIL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ D+ HV NFD+P+ E Y+HRIGRTGRAG+ G A T + + + + Sbjct: 296 VATDVAARGIDVHDLTHVINFDLPHDPEAYVHRIGRTGRAGKQGIAITFITPSEYRRLQF 355 Query: 360 IEK 362 I K Sbjct: 356 ISK 358 >gi|149639807|ref|XP_001507068.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27 (DEAD box protein 27) [Ornithorhynchus anatinus] Length = 742 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 250/469 (53%), Gaps = 29/469 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ + D+C A TGTGKTA+F LP+L Sbjct: 164 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGMLGKDICACAATGTGKTAAFALPVL 223 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + N+T L +GG+ + Q L Sbjct: 224 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALR 283 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 284 AGPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIKMCSHHRQ 343 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + FV + L Sbjct: 344 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVVSAL 403 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 404 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDVL 463 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 464 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 523 Query: 360 IEKL-----------------IEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNP--I 399 I K K++ L D+ + L E+ ++ QH+ A+ N + Sbjct: 524 IVKTAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLRLEAEEKEM-QHSEAQINTAKRL 582 Query: 400 PQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGN 448 +K G + N ++S +E K K+ + +QE D L RG Sbjct: 583 LEKGKG----EANEEPRRSWFQSREERKKEKIAKALQEFD---LALRGK 624 >gi|307255928|ref|ZP_07537729.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260381|ref|ZP_07542088.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306861196|gb|EFM93189.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865632|gb|EFM97513.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 445 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 8 MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ + + + L++A + GG+ ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL ++ L NP +I+ + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + M+ I+F ++++V L +L K+G + G++ Q R + ++ KEG + + Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV +V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 366 KIKRYTEE 373 >gi|187935259|ref|YP_001885538.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str. Eklund 17B] gi|187723412|gb|ACD24633.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str. Eklund 17B] Length = 480 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 220/371 (59%), Gaps = 6/371 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F LS +++ A+ + GY P+ +Q K IP +L+ D+ +QTG+GKTASF +P+ Sbjct: 4 EFNKFELSGELLKAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L+L PTRELA Q++++ G+ + + G Q +KL++ Sbjct: 64 KIDWDENK---PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR+LDH +RG L ++ VIDEAD ML+MGFI ++ I +P R TL Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKTNYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ +E++ + + + P I + + + T++ + H A + Y++K LL +L S Sbjct: 181 LFSATIPEEIKNLCDKHMNRPIDIAIKSQNLTSDNVSH--YAYHVGYNQKLDLLNNILIS 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++FC K+NV + L K+G+S IHG + Q+ R+ + F+ G +++VA Sbjct: 239 E-MPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RG+DI + HV N+D+P E Y+HRIGRTGRAG G A T ++++ IE Sbjct: 298 TDIASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIE 357 Query: 362 KLIEKKVDWLN 372 + I K++ N Sbjct: 358 EYIGFKLEVKN 368 >gi|242239282|ref|YP_002987463.1| ATP-dependent RNA helicase DbpA [Dickeya dadantii Ech703] gi|242131339|gb|ACS85641.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703] Length = 457 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 217/370 (58%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA+L P L+A GY+ TPIQ +P +L DV A+TG+GKTA+F L +L Sbjct: 4 FAELNALPAEQLTTLNALGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ GR + +L+L PTRELA QVA+ + + N+ V L GG+PF Q L Sbjct: 64 HLDAGRFNTQ---SLVLCPTRELADQVANELRRLARYMPNIKVLTLCGGVPFSIQRDSLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH + + ++ ++ LV+DEADRMLDMGF I + + VP RQT Sbjct: 121 HAPHIIVATPGRLLDHLEKETVNLDALQTLVLDEADRMLDMGFADAIDAVIAHVPDQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT D + +S +P IE++T +E F S K LLQ+LL Sbjct: 181 LLFSATWPDAIAAISHRIQHDPLVIEIDTVDEL-PAVEQQFYEV--SRSGKLDLLQKLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++FCN KK+ + +L SV A+HG+++QR R + L F G+ +++V Sbjct: 237 SREQPASCVVFCNTKKDCQAVYDALTASHQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++ E +IHRIGRT RAG G A +L A E+ + +A+ Sbjct: 297 ATDVAARGLDIKALEMVVNFELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANAL 356 Query: 361 EKLIEKKVDW 370 E+++ K+ W Sbjct: 357 EEMLNLKLSW 366 >gi|149912233|ref|ZP_01900811.1| ATP-dependent RNA helicase [Moritella sp. PE36] gi|149804692|gb|EDM64744.1| ATP-dependent RNA helicase [Moritella sp. PE36] Length = 421 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 215/370 (58%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF L L P+++ A+ D V+PT IQ + +P ++ D+ A TGTGKT +F+LP + Sbjct: 1 MDFESLDLDPQLIVALTDNNLVQPTLIQQQVLPTAMEGRDILASAPTGTGKTLAFLLPAI 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + R LIL PTRELA+QV + + V+++ GG+ + + L Sbjct: 61 QHLLDFPRRELGPGRVLILTPTRELASQVFQQAKMLAAYTDHKVSMVTGGVDYALHAEVL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D++I TPGR+L++ R IE+L++DEADRMLDMGF ++ IT+ + +Q Sbjct: 121 KNNLDIVIATPGRLLEYIRRDAFECAAIEVLILDEADRMLDMGFYDDVKRITNEMTRRQQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T+LFSAT+ + + +E L P N PS + H F+ ++ K ALL Sbjct: 181 TMLFSATLEGRGIDRFAEELLNEPVEFTAN-PSRREKAKIHQFMHHVDNHAHKQALLVHW 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ + T ++ I+F ++ + L L+ Q + G +DQ R + L+ FK +++ Sbjct: 240 LRDESTTRS-IVFVKTRERLAELVSYLQSQDIPCAYLRGEMDQAKRTRSLNQFKNDKVKV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ DV HVFNFD+P AE Y+HRIGRT RAG+ G A +LV D++ Sbjct: 299 LIATDVAARGIDVQDVSHVFNFDLPRSAEIYVHRIGRTARAGKKGTAISLVEAHDLRIFG 358 Query: 359 AIEKLIEKKV 368 IE+ E+ + Sbjct: 359 KIERYTEETI 368 >gi|254283223|ref|ZP_04958191.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B] gi|219679426|gb|EED35775.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B] Length = 409 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 216/369 (58%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L +++ V +AG+ +PIQ + +P LQ HD G AQTGTGKTA+F++ + Sbjct: 29 FHDLDLREEIMHGVAEAGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFND 88 Query: 63 LE----KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L +G + PR +I+ PTREL Q+A + E G++ L LIGG ++ Q +K Sbjct: 89 LLCNPLEGERFLAEPRAVIIAPTRELVMQIAADAEDLGRHTGLNTVALIGGADYQKQLQK 148 Query: 119 LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + R D+++ TPGR++D R L ++ +E LV+DEADRMLDMGFIP ++ I P Sbjct: 149 VSRRVTDLIVATPGRLIDFVERRDLYLDRVETLVLDEADRMLDMGFIPQVKRIVRSTPRK 208 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T ++ ++ + +P IE+ ++++ V A + + LL Sbjct: 209 EDRQTLLFSATFTPDIMNLARQWTFDPVTIEIEPDHVATDSVDQK-VYLVASHERMRVLL 267 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L D + I+F N++ V N+ L K G S + G ++Q R K L+ FK+GT Sbjct: 268 NVL--RSDEATSVIVFANRRDQVRNVYEKLRKAGISCGILSGEVNQAKRTKTLAQFKDGT 325 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+A RG+ + V HV N+++P E+Y+HRIGRTGRAG G + + +++D Sbjct: 326 ISVLVATDVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISISFASEDDGF 385 Query: 356 HIDAIEKLI 364 + IE L+ Sbjct: 386 LLPDIEALL 394 >gi|198274601|ref|ZP_03207133.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135] gi|198272048|gb|EDY96317.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135] Length = 424 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 218/371 (58%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L V+ A+ + + TP+Q TIP++L+ D+ G+AQTGTGKTA+++LP+L Sbjct: 1 MKFSELNLEDSVLDALDAMNFQECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L KG +I+ PTRELA Q+ E + ++ + GG I FE + K Sbjct: 61 NQLSKGGYPEDAINCIIMSPTRELAMQIDQQMEGFSYFMPVSSVAVYGGNDGIRFEQEKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q++++ L +P +++ + I+ ++ AQ K ++Q Sbjct: 181 RQTIMFSATMPTKIQQLAKTILHDPVEVKLAVSKPAEKIIQAAYICYEAQ---KLGIIQS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L QSQ + IIF + K V + +L++ +V +H +++Q R +I+ F+ I Sbjct: 238 LFQSQQP-ERVIIFASSKLKVKEVTKALKRMKLNVGEMHSDLEQSQREEIMHEFRNRRID 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSETEQTRF 356 Query: 358 DAIEKLIEKKV 368 IE + K + Sbjct: 357 KQIETFLGKDI 367 >gi|313899722|ref|ZP_07833225.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2] gi|312955337|gb|EFR37002.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2] Length = 477 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 217/366 (59%), Gaps = 10/366 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L + A+ GY P P+Q IPL+L++ D+ ++TG+GKTASF +P++ Sbjct: 1 MKFEDYKLDASICEALHTLGYQSPLPVQEAVIPLMLEKKDILVKSRTGSGKTASFAIPII 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 I E+ R P+ L+L PTRELA Q+ F+ G + A + G PF Q + Sbjct: 61 QDLIWEE-----RSPQALVLSPTRELALQIKGEFDNIGAYKRIKTAAVFGKQPFRFQAQD 115 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 +++ V+ TPGR+LDH +G L I ++IDEAD ML+MGFI +Q I +P Sbjct: 116 VKQRTHVVAGTPGRVLDHLEQGTLRTEKIRYIIIDEADEMLNMGFIETVQKIFFRLPKNA 175 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +FSAT+ E+Q+++ +FL+ + +E+ + +S +E + H + ++ K ALL+ Sbjct: 176 SVCMFSATLPQEIQELAHDFLKQAEVVEIESQTSVSEQMHH-YAYRLKEHEKPQALLK-- 232 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ ++ IIF +++V +C L +G SV +HG + Q R++ + +F+ G +++ Sbjct: 233 LLCRELPESCIIFAKTQEHVREICRMLYDKGISVDQLHGGMLQEDRLENMKDFRLGKLRI 292 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 + A+D+AARG+DI DV H+ N+D+PN+ E YIHRIGR+ R R G A + V++ D + Sbjct: 293 LTATDVAARGIDIQDVTHIINYDMPNKKETYIHRIGRSARLDRSGTAISFVSQYDDFRLQ 352 Query: 359 AIEKLI 364 +E+ + Sbjct: 353 ELEEYL 358 >gi|311249333|ref|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus scrofa] gi|311249349|ref|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus scrofa] Length = 483 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 156/416 (37%), Positives = 233/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P T E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q+ QD ++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 IQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I+KK++ + + + + L ++++ R+ I ++ FD +K+ Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAANFDEKKE 409 >gi|226490952|ref|NP_001152536.1| ATP-dependent RNA helicase DDX23 [Zea mays] gi|195657271|gb|ACG48103.1| ATP-dependent RNA helicase DDX23 [Zea mays] gi|224030151|gb|ACN34151.1| unknown [Zea mays] Length = 758 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 25/373 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +++ L +++ A+ AGY KP+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPML+ Sbjct: 339 WSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 398 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ + K+ + V ++GG E Q Sbjct: 399 ITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGF 458 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+ +G +++I TPGR+LD R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 459 KIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 518 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T + I Sbjct: 519 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 578 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + + S+K LQ++L K I+FCN KK L+K GF V +HG Sbjct: 579 VI--MVKESEKMPRLQKILTDLGD-KTAIVFCNTKKTADMRAKDLDKSGFRVTTLHGGKS 635 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+A RG+DIPDV HV N+++P+ + Y HRIGRTGRAG Sbjct: 636 QDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAG 695 Query: 341 RHGKAFTLVAKED 353 + G A + + E+ Sbjct: 696 KKGVATSFLTLEN 708 >gi|88861236|ref|ZP_01135868.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2] gi|88816717|gb|EAR26540.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2] Length = 422 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 137/380 (36%), Positives = 225/380 (59%), Gaps = 8/380 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FAD ++P+V+ + G+ TPIQ + +P +++ D+ G AQTGTGKT +F+ Sbjct: 11 FADFNIAPEVIAGLNAHGFEFCTPIQAQCLPYAIEKRDIAGQAQTGTGKTLAFLTATCHH 70 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ + + + PR LI+ PTRELA Q+ + + + NL + L+ GG +E Q +LE+ Sbjct: 71 LLQSSKGQGKHPRALIMAPTRELAVQIHKDAKILAPHCNLNLGLVYGGEEYEKQLAQLEK 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ-- 179 G D+LI T GR++D + +G +N IE++V+DEADRM D+GFI I+ + +P Q Sbjct: 131 GVDILIGTTGRLIDLYKQGAYSLNEIEVVVLDEADRMFDLGFIKDIRYLFRRMPDATQRL 190 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238 LLFSAT++ +Q+++ + NP ++V T + I E F + K LL + Sbjct: 191 NLLFSATLSYRVQELAFEHMTNPIHVQVEPSQKTGKRIVEELF---HPAQVDKIPLLLTI 247 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ ++ + I+F N K + L+ V + G+++Q+ R+ IL F G + Sbjct: 248 IE-EEWPEKAIVFSNTKHMCETVYAWLKAADHRVGLLTGDVNQKKRISILEQFTAGNLDF 306 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGL IP+V HVFNFD+P+ E+Y+HRIGRTGRAG GKA + ++ ++ Sbjct: 307 LVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGKAISFACEQYAYNLQ 366 Query: 359 AIEKLIEKKVDWLNGDLSSL 378 IE+ +E + + D ++L Sbjct: 367 PIEEYVEHVIPLSHYDKTAL 386 >gi|261210411|ref|ZP_05924705.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341] gi|260840469|gb|EEX67035.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341] Length = 436 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 150/417 (35%), Positives = 231/417 (55%), Gaps = 12/417 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD GL P+V+ + G+V TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T +GR + PR +I+ PTRELA Q+ ++ E + L AL GG ++ Q Sbjct: 71 LLTTPAAEGRTDTQ-PRAIIMAPTRELAIQIYNDAEPLLASTGLKAALAYGGESYDKQLA 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+ G D+LI T GRI+D + + +N I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFSLNYIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K L L V + G++ Q+ R +IL F +G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEQLWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEK-IDIAQHNHARKNNPIPQKSTGFDRRKK 411 ++ AIE IE + + D S+L L + + R+ N ++ G +R+ + Sbjct: 367 NLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNNGGNRKPQ 423 >gi|70728927|ref|YP_258676.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5] gi|68343226|gb|AAY90832.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5] Length = 473 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 217/370 (58%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 29 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 88 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A++R+ +TLIL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 89 L-IGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 147 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+ N G L + +E+LV+DEADRMLDMGF +Q + P +QT+ Sbjct: 148 VPDILIGTPGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 207 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239 LFSAT L+++ L NP+ +++N+ S ET + A + Q+ ++ L Sbjct: 208 LFSATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIV---NWL 264 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +T + I+F N + + L Q + +HG DQ+ R + K+G ++++ Sbjct: 265 LANETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKIL 324 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + V NFD+P + Y+HRIGRTGRAG G A +L+ D + + Sbjct: 325 VATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSS 384 Query: 360 IEKLIEKKVD 369 IE+ +++ + Sbjct: 385 IERYLKQSFE 394 >gi|242033243|ref|XP_002464016.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor] gi|241917870|gb|EER91014.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor] Length = 750 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 25/373 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +++ L +++ A+ AGY KP+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPML+ Sbjct: 331 WSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 390 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P +++ PTRELA Q+ + K+ + V ++GG E Q Sbjct: 391 ITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGF 450 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+ +G +++I TPGR+LD R ++N +V+DEADRM+DMGF P + + +P + Sbjct: 451 KIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 510 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC 220 R T +FSATM +++++ +L+NP + + T + I Sbjct: 511 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 570 Query: 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 + + S+K LQ++L K I+FCN KK L+K GF V +HG Sbjct: 571 VI--MVKESEKMPRLQKILTDLGD-KTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKS 627 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q R L F+ ++VA+D+A RG+DIPDV HV N+++P+ + Y HRIGRTGRAG Sbjct: 628 QDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAG 687 Query: 341 RHGKAFTLVAKED 353 + G A + + E+ Sbjct: 688 KKGVATSFLTLEN 700 >gi|3435312|gb|AAC32396.1| RNA helicase-related protein [Homo sapiens] Length = 709 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 136 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 195 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 196 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 251 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 252 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 311 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 312 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 371 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 372 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 430 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 431 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 487 >gi|19705271|ref|NP_602766.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713234|gb|AAL94065.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 528 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 216/372 (58%), Gaps = 16/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F +LGLS K++ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRELGLSEKILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ ++DEAD ML+MGF+ I+ I + ++ Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM DE+ KV++N ++ + + V + T + E + V ++ C ++ Sbjct: 185 LFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 358 LLQIQKAVKKEI 369 >gi|262278447|ref|ZP_06056232.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus RUH2202] gi|262258798|gb|EEY77531.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus RUH2202] Length = 383 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 223/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLNLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K +L V L+GG+ F+ Q K Sbjct: 65 LLHNPIQEQRFRGE-PRALILAPTRELALQIESDAKLLTKFSDLHVVTLLGGVDFDKQKK 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L+ D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 QLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ ++ +L P +E+ T +E Q K L Sbjct: 184 KEERQTLMFSATFSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ ++ + +IF N++ V L L++ G+ V + G I Q R+K+L FK+G Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLDQFKQG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV N+ +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 301 KNNIMIATDVAGRGIHVDGVSHVVNYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDA 360 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 361 FYLPEIEKAIGKKL 374 >gi|205352662|ref|YP_002226463.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272443|emb|CAR37330.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627728|gb|EGE34071.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 457 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 216/364 (59%), Gaps = 8/364 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDALL-AIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + + Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELLV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQP 374 Query: 379 NPPL 382 + PL Sbjct: 375 SLPL 378 >gi|307246946|ref|ZP_07529011.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306852231|gb|EFM84471.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 449 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 8 MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ + + + L++A + GG+ ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL ++ L NP +I+ + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + M+ I+F ++++V L +L K+G + G++ Q R + ++ KEG + + Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV +V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 366 KIKRYTEE 373 >gi|160914649|ref|ZP_02076863.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991] gi|158433189|gb|EDP11478.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991] Length = 472 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 214/383 (55%), Gaps = 13/383 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F D GL ++ A+ GY KP +Q IP +L + DV A+TG+GKTASF +P+L Sbjct: 1 MEFKDFGLEQGIMEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L ++P++LIL PTRELA Q+ F++ G + + G PF Q + L+ Sbjct: 61 QQLIWNE---KLPQSLILAPTRELAMQIQTEFDQIGAKKRIKSLAIYGKFPFRFQKQDLQ 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + V+ TPGRILDH ++I +VIDEAD MLDMGF+ ++ + +P R T Sbjct: 118 QRTHVICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++ FL +P I + + IEH +V Q K+ ALL L Sbjct: 178 ALFSATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEH-YVYKLNQQDKETALLH--LL 234 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++T+++ I+F ++ V N+ L+ V +HG + Q R+ L F+ G +++V Sbjct: 235 GKETVESAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASD+AARG+DI D+ HV N D P++ E YIHR+GRT R GKA + V D Sbjct: 295 ASDVAARGIDIADISHVINVDFPDKKETYIHRLGRTARKDTSGKAISFVTARD------Q 348 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE 383 EKL++ + D+L LS + E Sbjct: 349 EKLMQLE-DYLGYSLSMRDASTE 370 >gi|11499835|ref|NP_071079.1| DEAD-box ATP dependent DNA helicase [Archaeoglobus fulgidus DSM 4304] gi|2648271|gb|AAB89003.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus fulgidus DSM 4304] Length = 368 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 214/365 (58%), Gaps = 13/365 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 ++F DLG+S + AV G+ KPT IQ + IP + D+ G AQTG+GKTA+F LP+ Sbjct: 7 VEFEDLGISENGLNAVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPI 66 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L ++++ R + + +++ PTRELA QV D E + V + GG P Q ++L Sbjct: 67 LDLVDE---RSKDVQAIVITPTRELALQVKDEIESLRGGKKVHVLAVYGGQPIFPQIERL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G +++ TPGR++DH R L + + V+DEADRMLDMGFI I+ I R+ Sbjct: 124 RKGVQIVVGTPGRVIDHLERRTLSLEKVRFFVLDEADRMLDMGFIDDIERILRHAGAERR 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CF-VATYAQYSKKCALLQQ 237 L+FSATM E+ +++ ++++ + + V++ T E +EH C V ++ C +L + Sbjct: 184 VLMFSATMPPEVLRLARRYMRDYEVVRVHS-KITPENVEHRCLKVNPEKRFEHLCRILDE 242 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 GI+FC KK L L +G+ A++G+I Q R IL NF++G + Sbjct: 243 ------NNFYGIVFCQTKKETRELGRRLRARGYKADALNGDIPQHKRESILRNFRKGYTR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+ D+ HV N+ +P E YIHR GRTGR G+ GKA T VA + + + Sbjct: 297 VLVATDVAARGIDVKDLTHVVNYSIPQDPEAYIHRTGRTGREGKRGKAITFVAPWESRKL 356 Query: 358 DAIEK 362 IE+ Sbjct: 357 KIIER 361 >gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1] gi|160358658|sp|A6QRQ7|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3 gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1] Length = 485 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/372 (38%), Positives = 221/372 (59%), Gaps = 14/372 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ + A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 61 FKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 118 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P++L IL PTRELA Q+++ FE G ++ A+++GG+ +Q L Sbjct: 119 ----QALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISL 174 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + +++ LV+DEADR+LD+ F P + I ++P R Sbjct: 175 GKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRER 234 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237 +T LFSATM+ +++ + L NP R+ +++ T T+ ++ +Y K L Sbjct: 235 RTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKY--KDIYLVY 292 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ ++ I+F L L GF +HG + Q SR+ LS F+ + Sbjct: 293 LL-NEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRD 351 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V NFD+P+ ++ YIHR+GRT RAG+ G AF++V + DI+ Sbjct: 352 ILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVW 411 Query: 358 DAIEKLIEKKVD 369 IE + KK+D Sbjct: 412 LRIENALGKKLD 423 >gi|15930131|gb|AAH15505.1| DDX42 protein [Homo sapiens] gi|23336904|tpg|DAA00077.1| TPA_exp: SF3b125 DEAD-box protein [Homo sapiens] gi|158259277|dbj|BAF85597.1| unnamed protein product [Homo sapiens] Length = 819 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 136 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 195 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 196 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 251 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 252 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 311 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 312 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 371 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 372 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 430 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 431 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 487 >gi|83748492|ref|ZP_00945513.1| Hypothetical Protein RRSL_01624 [Ralstonia solanacearum UW551] gi|83724796|gb|EAP71953.1| Hypothetical Protein RRSL_01624 [Ralstonia solanacearum UW551] Length = 499 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 149/392 (38%), Positives = 222/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P V+ + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 44 FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAQ 103 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QVA + + N+ V L GG P Q LE Sbjct: 104 LDARRFDVQ---AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 160 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 161 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 220 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S L+NPK +++ ++ + + T + LL + + Sbjct: 221 LFSATYPDGIAKLSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDKRLHAVGLLLKHYRP 280 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 281 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 336 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + IE Sbjct: 337 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGNIE 396 Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDI 387 +++ ++V+W G+ + L PP+E + I Sbjct: 397 EVLGREVEWHRLDEIDAGNDAPLLPPMETLQI 428 >gi|161503259|ref|YP_001570371.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864606|gb|ABX21229.1| hypothetical protein SARI_01328 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 457 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 138/355 (38%), Positives = 213/355 (60%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q ++P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAASLPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VSLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF Q L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KRTVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPETIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P I+++T + IE F T AQ +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPMHIDIDTVDAL-PAIEQQFFETSAQ--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAAGQSALALHGDLEQRDRDQTLVRFTNGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEAHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|296108765|ref|YP_003615714.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus ME] gi|295433579|gb|ADG12750.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus ME] Length = 357 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 222/369 (60%), Gaps = 13/369 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59 MDF LGLS + A+ G+ KPT IQ K IP++L ++ G AQTGTGKTA+F LP Sbjct: 1 MDFKSLGLSDNTLKALKRKGFKKPTKIQEKIIPILLSEDVNIVGQAQTGTGKTAAFGLP- 59 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I+EK + + LIL PTRELA QVA+ + NL + + GG P + Q KL Sbjct: 60 --IIEKINDEKEI-KALILTPTRELAKQVAEELKSLKGKKNLKIVEIYGGKPIKEQIYKL 116 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RGA++++ TPGR+LDH R + + N+ V+DEAD ML+MGFI ++ I + Sbjct: 117 -RGANIVVGTPGRLLDHIKRKTINLKNLSYFVLDEADEMLNMGFIEDVEEILKHTNDDKN 175 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ E+ +++ ++++ K I+V + + E +H V+ S+K LL +++ Sbjct: 176 ILLFSATLPREILNLAKKYMRDYKLIKVKSSKNLIEQ-KHFKVSN----SEKFNLLCKII 230 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ G+IFC +++V NL L ++G+S A HG + Q R KIL FK I ++ Sbjct: 231 NEENFY--GLIFCKTREDVKNLARKLIEKGYSAEAFHGKLSQFRREKILKRFKMKKINIL 288 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 V++D+AARG+DI + HV N+ +P E Y+HRIGRTGRAG+ GKA T V + K Sbjct: 289 VSTDVAARGIDIEGLTHVINYSLPQNPEYYVHRIGRTGRAGKRGKAITFVEPHEYKKYAH 348 Query: 360 IEKLIEKKV 368 +++ + KK+ Sbjct: 349 MKRCLCKKL 357 >gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 496 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 148/376 (39%), Positives = 217/376 (57%), Gaps = 28/376 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A + Y KPTPIQ K IP L+ HD+ G+AQTG+GKTA+F +P+L Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 185 LWHDQEPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK 241 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TRQT 180 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 242 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 301 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+ T +T+ + TY Y Sbjct: 302 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIY----- 356 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 LL + + K IIF K N + LC+ LE FS A+HG+++Q RM L Sbjct: 357 LLNEFIG-----KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGALDL 408 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 409 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 468 Query: 351 KEDIKHIDAIEKLIEK 366 + D++ I IE+++ K Sbjct: 469 QYDLELILRIEEVLGK 484 >gi|28211793|ref|NP_782737.1| ATP-dependent RNA helicase [Clostridium tetani E88] gi|28204235|gb|AAO36674.1| ATP-dependent RNA helicase [Clostridium tetani E88] Length = 370 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 219/370 (59%), Gaps = 6/370 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGLS ++ + G PTPIQ ++I L+ + +DV AQTGTGKT +F+LPM Sbjct: 3 NFKELGLSNDLIQNLKTQGINSPTPIQRESILLIKEGNDVIAEAQTGTGKTLAFLLPMF- 61 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 E + + LI+ PTRELA Q+ + K ++ +L + GG +Q KL+ Sbjct: 62 --ENMSPNINTIQGLIVTPTRELAIQITEEAMKLNESKDLNILSAYGGKDIGSQLNKLKG 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR+LDH +R + + N++ LV+DEAD+ML MGF ++ I RQTL Sbjct: 120 NIHLVIATPGRLLDHLDRNTIDLKNLKTLVLDEADQMLLMGFKNEVETIIKHTSKNRQTL 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM ++K++ ++ +PK I + T + I+ + T +K L + L ++ Sbjct: 180 CFSATMNSSVKKLAYKYMDDPKLITIQKEEITLKNIKQVLIET-TDRNKLDDLCKVLNET 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 M IIFC K+ V L L ++G++ +HG++ Q R K++ +FK IQ ++A Sbjct: 239 NPFM--AIIFCRTKRRVDKLEMDLYQRGYNCKKLHGDLTQSKREKVMKDFKNTKIQYLIA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI V H++N+D+P ENYIHRIGRTGRAG G A+ + +D + ++ IE Sbjct: 297 TDVAARGLDITGVTHIYNYDIPENTENYIHRIGRTGRAGEKGYAYLFIDLKDKETLNIIE 356 Query: 362 KLIEKKVDWL 371 K I+ K++ + Sbjct: 357 KGIKTKIERI 366 >gi|88706512|ref|ZP_01104216.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71] gi|88699224|gb|EAQ96339.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71] Length = 462 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 144/366 (39%), Positives = 210/366 (57%), Gaps = 12/366 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DFA L LSP + A+ GY TP+Q ++IPL+LQ DV A+TG+GKTA+F + +L Sbjct: 5 DFAALPLSPAQLEALAALGYEHMTPVQAQSIPLLLQGKDVIARARTGSGKTAAFGIGLLQ 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 + R + L+L PTRELA QV+ + N+ + L GG PF Q LE Sbjct: 65 TINP---RFFGVQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKPFGPQVGSLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGRI DH R L ++ +++LV+DEADRMLDMGF ++ I + P +RQT Sbjct: 122 HGAHIVVGTPGRIQDHLGRDTLKLDGLKVLVLDEADRMLDMGFADSMEAIVAKTPRSRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP-SSTAETIEHCF--VATYAQYSKKCALLQQ 237 LLFSAT + ++K+S + + P + V+ + E IE F V + +++ AL + Sbjct: 182 LLFSATYPENIRKMSASIQRQPSMVTVDEEVAHKEEVIEQLFYEVQKHERHTTLLALFEH 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 T N ++FCN KK + L AIHG++DQR R ++L F + Sbjct: 242 Y-----TPANAVVFCNTKKQCDEVASVLRDYDIEARAIHGDLDQRERDQVLVQFANNSCP 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + V N+++P E Y+HRIGRTGRAG G A ++V + I Sbjct: 297 VLVATDVAARGLDIKSLAMVINYELPRDPEVYVHRIGRTGRAGETGLAMSIVIPSETHRI 356 Query: 358 DAIEKL 363 IE+ Sbjct: 357 SKIEEF 362 >gi|110760457|ref|XP_391829.3| PREDICTED: putative ATP-dependent RNA helicase Pl10 [Apis mellifera] Length = 701 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 220/393 (55%), Gaps = 25/393 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F ++ L+ + ++ AGY KPTP+Q IP+++ R DV AQTG+GKTA+F++P+L Sbjct: 225 FDEVKLTEIIKNSISLAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQ 284 Query: 62 ILEKG---------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 I E G R P L+L PTRELA Q+ D K+ + A++ GG Sbjct: 285 IYESGPRPPPINSSGKRKHFPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNI 344 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT- 171 Q ++L+RG +L+ TPGR++D RGK+ ++N LV+DEADRMLDMGF P I+ I Sbjct: 345 VDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRIVQ 404 Query: 172 -SLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228 +P T RQTL+FSAT E+Q ++ +FL N + V ST+E I V + + Sbjct: 405 EDTMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIV--WVEE 462 Query: 229 SKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 K + L LLQ+ + ++F KK L L + G+ V +IHG+ QR Sbjct: 463 HDKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLHQMGYPVTSIHGDRTQRE 522 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L F+ G ++VA+ +AARGLDIP V HV NFD+P E Y+HRIGRTGR G G Sbjct: 523 REDALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLG 582 Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKVD---WLN 372 A + ++I + D + L+E + WL+ Sbjct: 583 LATSFFNNKNINLVRDLVSLLVEANQELPPWLD 615 >gi|326571018|gb|EGE21042.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC7] Length = 391 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 150/381 (39%), Positives = 232/381 (60%), Gaps = 25/381 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F DL LS ++ AV + + TPIQ + +P L D G AQTGTGKTA+F ++T Sbjct: 8 NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATF---LIT 64 Query: 62 ILEKGRAR------VRM---PRTLILEPTRELAAQV-ADNFE--KYGKNYNLTVALLIGG 109 I+E R +R PR L+L PTRELA Q+ AD E ++ + YNL + GG Sbjct: 65 IIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCHELTRFSQLYNLCIT---GG 121 Query: 110 IPFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168 F+ Q ++L +R D+LI TPGRI+D N+G+L ++ +E+ V+DEADRMLDMGFIP I+ Sbjct: 122 SDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIK 181 Query: 169 NITSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 I +P RQ+LLFSAT ++ ++ +L P +E+ S T + I+ F Sbjct: 182 RIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTE 241 Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 + +K + L+Q+L + D++K IIF N+K V L L + V + G++ Q+ R + Sbjct: 242 R--EKTSALKQIL-ADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRER 297 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L FK+G + ++VA+D+A RG+ + DV HV N+ +P+ ++Y+HRIGRTGRAG G + Sbjct: 298 YLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSI 357 Query: 347 TLVAKEDIKHIDAIEKLIEKK 367 + V++ D ++ A+E+ I++K Sbjct: 358 SFVSENDAFNLPALERHIDQK 378 >gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM 18170] Length = 418 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 221/371 (59%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L V+ A+ + + TP+Q +TIP++L+ D+ G+AQTGTGKTA+++LP++ Sbjct: 1 MKFTELNLEESVLDALDAMNFKECTPVQEQTIPVILEGRDLIGVAQTGTGKTAAYLLPVI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L KG +I+ PTRELA Q+ E + ++ + GG I FE + K Sbjct: 61 NQLSKGGYPADAINCVIMAPTRELAQQIDQQMEGFSYFMPVSSVAIYGGNDGIRFEQEKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++++ L +P +++ + I+ ++ AQ K +++ Sbjct: 181 RQTIMFSATMPAKIQQLAQSILHDPAEVKLAVSKPADKIIQAAYICYEAQ---KLGIIES 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + Q+ + IIF + K V + +L++ +V +H +++Q R +I+ F+ G I Sbjct: 238 LFRQQEP-ERVIIFASSKLKVKEVTKALKRLKLNVGEMHSDLEQSQRDEIMHEFRNGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V++ + Sbjct: 297 MLVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSENEQTRF 356 Query: 358 DAIEKLIEKKV 368 IE + K++ Sbjct: 357 KQIEDFLGKEI 367 >gi|225374820|ref|ZP_03752041.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM 16841] gi|225213389|gb|EEG95743.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM 16841] Length = 531 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 220/368 (59%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P+V+ A+ + G+ + TPIQ + IP+V+ DV G AQTGTGKTASF +P+L Sbjct: 6 FDELDLYPQVLRAIKEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ + ++ +IL PTRELA QV++ K K + + + + GG Q K L+ Sbjct: 66 VDPNNKKTQV---IILSPTRELAIQVSEEIRKLSKYMHGVKILPVYGGQDINRQIKALKG 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 GA ++I TPGR++DH R + + +V+DEAD ML+MGF I+ I +P RQT Sbjct: 123 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM + +++ + + I+V T +IE + + K +L +LL Sbjct: 183 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPSIEQYYYDV--KRKDKTEVLTRLLD 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K ++FCN KK V L L+ +G+ +HG++ Q R +++ F+ G +++++ Sbjct: 241 YYNP-KLSLVFCNTKKMVDELSEELKSRGYMAEGLHGDMKQAQRDRVMKAFRSGRVEILI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G+AFT V +++ + I Sbjct: 300 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 359 Query: 361 EKLIEKKV 368 + + K+ Sbjct: 360 MRYCKTKI 367 >gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium sp. Spyr1] gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] Length = 505 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/372 (38%), Positives = 215/372 (57%), Gaps = 13/372 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LG+ ++V A+ + G IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 12 FAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHR 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGIPFEA 114 + R +PR L++ PTREL QV ++ K LTV + GG P+E Sbjct: 72 ITTDTERPLTGIPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYEP 131 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L++G DV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I + Sbjct: 132 QIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQI 191 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKC 232 P RQ +LFSATM D + ++ F+ P R E S+T +T E A A K Sbjct: 192 PAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQ--FAYRAHALDKV 249 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ ++LQ++ +IF K+ + L ++GF V A+HG++ Q +R K L F+ Sbjct: 250 EMVARILQAEGRGAT-MIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFR 308 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G + ++VA+D+AARG+DI D+ HV NF +P + Y+HRIGRTGRAG+ G A TLV + Sbjct: 309 NGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWD 368 Query: 353 DIKHIDAIEKLI 364 ++ I+K + Sbjct: 369 ELPRWSMIDKAL 380 >gi|224824286|ref|ZP_03697394.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] gi|224603705|gb|EEG09880.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] Length = 417 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 136/360 (37%), Positives = 207/360 (57%), Gaps = 6/360 (1%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILE 64 +GL P + A L GY+ P+ IQ IP +LQ DV AQTG+GKTA+F LP+L L Sbjct: 1 MGLQPSLAQAALSQGYLAPSAIQTSAIPAILQGRDVLATAQTGSGKTAAFCLPLLQQWLT 60 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKKLERG 122 + R + LIL PTRELA QV + + + + VA++ GG+ Q L G Sbjct: 61 SRQGSPRQVQALILLPTRELAVQVGNTLRELALSLPRRVKVAVVYGGVSINPQMMALRGG 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 AD+++ TPGR+LD L ++ + LV+DEADR+LD+GF + + +L+P RQ LL Sbjct: 121 ADIVVATPGRLLDLIGYNALSISTVGTLVLDEADRLLDLGFADELGRLLALLPPYRQNLL 180 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT + ++E L P RI++ ++TA I + A S++ LL+ LLQ+ Sbjct: 181 FSATFPPAVHSLAEQLLSQPLRIDIAQTAATAPDIHQRAIEVDA--SQRTMLLRHLLQTH 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++F ++ + L++ G A+HG+ Q R ++L++ K G +Q++VA+ Sbjct: 239 G-WDRVLVFVASRQAADRVTGKLQRAGIRAAALHGDCSQGQRGQVLADLKSGQLQVLVAT 297 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DIP + V N+D+P +Y HRIGRTGRAG G+A + ++ + H IEK Sbjct: 298 DVAARGIDIPLLPVVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFISADCAAHFQLIEK 357 >gi|71281498|ref|YP_266942.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H] gi|71147238|gb|AAZ27711.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H] Length = 428 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 220/366 (60%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADL L+P+VV + G+ T IQ K++P++LQ D+ G AQTG GKT +F+ Sbjct: 11 FADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHH 70 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+K PR LI+ PTRELA Q+ + + K+ L + ++ GG +E+Q +LE Sbjct: 71 LLQKEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELEA 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTRQ 179 G D+LI T GR++D+ +G + NIE++V+DEADRM D+GFI I+ + +P R Sbjct: 131 GVDILIGTCGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPATERL 190 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQL 238 ++LFSAT++ +++++ + + +P +EV T I E F Y K LLQ L Sbjct: 191 SMLFSATLSFRVKELAFDHMNDPTSVEVEPEQKTNSRISEELF---YPSNEDKMTLLQTL 247 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ +D + I+F N K + L V + G++ Q+ R+KIL F +GT+ + Sbjct: 248 IE-EDWPEKAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDI 306 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGL IP V HVFN+D+P+ ++Y+HRIGRTGRAG G A +L ++ + ++ Sbjct: 307 LVATDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACEQYVFNLP 366 Query: 359 AIEKLI 364 IE I Sbjct: 367 EIETYI 372 >gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum PYR-GCK] Length = 505 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/372 (38%), Positives = 215/372 (57%), Gaps = 13/372 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA LG+ ++V A+ + G IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 12 FAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHR 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK------NYNLTVALLIGGIPFEA 114 + R +PR L++ PTREL QV ++ K LTV + GG P+E Sbjct: 72 ITTDTERPLTGIPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYEP 131 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L++G DV++ TPGR+LD +G L + + +LV+DEAD MLD+GF+P I+ I + Sbjct: 132 QIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQI 191 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYSKKC 232 P RQ +LFSATM D + ++ F+ P R E S+T +T E A A K Sbjct: 192 PAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQ--FAYRAHALDKV 249 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ ++LQ++ +IF K+ + L ++GF V A+HG++ Q +R K L F+ Sbjct: 250 EMVARILQAEGRGAT-MIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFR 308 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G + ++VA+D+AARG+DI D+ HV NF +P + Y+HRIGRTGRAG+ G A TLV + Sbjct: 309 NGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWD 368 Query: 353 DIKHIDAIEKLI 364 ++ I+K + Sbjct: 369 ELPRWSMIDKAL 380 >gi|317046374|ref|YP_004114022.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp. At-9b] gi|316947991|gb|ADU67466.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b] Length = 431 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 150/391 (38%), Positives = 226/391 (57%), Gaps = 17/391 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +GR +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLTHPAAEGR-QVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE+G D+L+ T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLEQGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWVFRRIPPA 189 Query: 178 RQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q ++LFSAT++ +++++ + N + +EV T I E F Y +K L Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ LL+ ++ I+F N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 247 LQTLLE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYA 365 Query: 355 KHIDAIEKLIEKK--VDWLNGD--LSSLNPP 381 ++ AIE+ I V N + LS L PP Sbjct: 366 LNLPAIEEYIGHGIPVSKYNSEALLSDLPPP 396 >gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa] gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa] Length = 463 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/418 (33%), Positives = 241/418 (57%), Gaps = 18/418 (4%) Query: 1 MDFADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59 + F LG++ V+C D + KPT +QI +P ++ D+ G+A+TG+GKTA+F +P+ Sbjct: 24 ITFQQLGVT-DVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPI 82 Query: 60 LTILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L +A + P+ L+L PTRELA Q+ + FE G + + +A+++GG+ Q+ Sbjct: 83 L------QALLETPQKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQS 136 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L + V++ TPGR++DH K + ++ LV+DEADR+L+M F ++ I ++P Sbjct: 137 LALAKRPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVEVEKILKVIP 196 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R+T L+SATMT ++ K+ L +P RIEV++ T + ++ ++ + Y K A L Sbjct: 197 KERRTYLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYI--FIPYKYKEAYL 254 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L ++ + I+FC+ + + L K GF +HG + Q R+ L+ FK T Sbjct: 255 VYIL-NEMAGQTAIVFCSTCVSALRTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKT 313 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +D+A+RGLDIP V V N+DVP ++++Y+HR+GRT RAGR G A T V + D++ Sbjct: 314 STTLICTDVASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVE 373 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 IE+LI KK+ + + +E+++ AQ R+ + +K R++K + Sbjct: 374 IYQRIERLIGKKLPLFETVENDVMLLMERVEEAQKLAKREMKEMEEKK---GRKRKQF 428 >gi|261345270|ref|ZP_05972914.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541] gi|282566969|gb|EFB72504.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541] Length = 428 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 219/373 (58%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ G+ TPIQ T+P ++ DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALNKKGFNFCTPIQAATLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHF 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LI+ PTRELA Q+ + ++ + L + L GG ++ Q K Sbjct: 71 LLTHPAMDGKKTNQPRALIMAPTRELAVQIYSDSKELAEYTGLKMGLAYGGDGYDEQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 L+ G D+L+ T GR++D+ +G + + I+++V+DEADRM D+GFI I+ I +P Sbjct: 131 LQNGVDILVGTTGRLIDYAKQGHVDLTAIQVVVLDEADRMYDLGFIKDIRWIFRRMPSAA 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R LLFSAT++ +++++ + NP+ IEV T I E F Y +K LL Sbjct: 191 DRLNLLFSATLSYRVRELAFEQMNNPEYIEVEPLQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ + IIF N K ++ L G V + G++ Q+ R++IL F +G Sbjct: 248 QTLLE-EEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGH 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 IDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYSL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE+ I+ + Sbjct: 367 NLPAIEEYIQHSI 379 >gi|317010528|gb|ADU84275.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7] Length = 494 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 214/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL V+ +V +AG+ P+PIQ K IP +LQ DV AQTGTGKTA+F LP++ Sbjct: 24 FNGLGLKESVLKSVYEAGFTSPSPIQEKAIPAILQGRDVIAQAQTGTGKTAAFALPIINN 83 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ L++ PTRELA Q++D K GK+ + GG + Q + +++ Sbjct: 84 LKNNHTI----EALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 139 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+I TPGR+LDH ++ +++V+DE+D MLDMGF+ I+ I +P Q LL Sbjct: 140 PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILL 199 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++++++ L+NP +I + + T I F ++ + +LL +Q Sbjct: 200 FSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEH--ERSEAIMRLLDTQ 257 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K+ I+F KK L L + + A+HG++DQR R + FK+ ++VA+ Sbjct: 258 APEKS-IVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVAT 316 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLDI V HVFN+ +P E+YIHRIGRTGRAG+ G A TLV + K + ++K Sbjct: 317 DVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 376 Query: 363 LIEKKVDWL 371 I+ +++ Sbjct: 377 EIDSEIELF 385 >gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM 20548] Length = 536 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 219/362 (60%), Gaps = 8/362 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + +++ A+ D GY KP+PIQ ++IP +L+ +D+ G +QTG+GKTA+F +P++ Sbjct: 1 MKFNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEAQNKKL 119 +E + + LIL PTREL QV+ EK Y + + + GG Q K L Sbjct: 61 ENIEANG----ITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSL 116 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++G ++++ TPGR++D R L ++ ++ +V+DEAD M DMGF ++ I RQ Sbjct: 117 KKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQ 176 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T FSATM E+Q+ S+ + NP +++ + T + I+ ++ + S K L +LL Sbjct: 177 TCFFSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKL--KESMKEEALMRLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + I+FCN K+ V L SL K+ + V +HG++ Q SR +++ F+ TIQ++ Sbjct: 235 EIHKA-NLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQIL 293 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ DV VFN+D+P E Y+HRIGRT RAG+ G +F+L++ D + Sbjct: 294 VATDIAARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQ 353 Query: 360 IE 361 IE Sbjct: 354 IE 355 >gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum] Length = 860 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/355 (39%), Positives = 207/355 (58%), Gaps = 2/355 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS + AV GY +PTPIQ K IPL+L D+ A TG+GKTA+F+LP+L Sbjct: 236 FEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILER 295 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L A R+ R LI+ PTRELA Q FE + N+ L++GG+ + Q +L + Sbjct: 296 LLYRDATHRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHELRKR 355 Query: 123 ADVLICTPGRILDH-FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV+I TPGR++DH N + + +IEILV+DEADR+LDMGF + + P RQTL Sbjct: 356 PDVIIATPGRLIDHLLNAHDVGLEDIEILVLDEADRLLDMGFKDELNRVVESCPDGRQTL 415 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240 LFSAT++D+++ +++ L P R+ V+ A T+E F+ Q + + A+L L Sbjct: 416 LFSATLSDDVKLLAKLSLSQPVRVAVDALFQVASTLEQEFIKIKPGQLADRTAMLLSLCT 475 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 I+F KK V + L G V +HG+++Q R + L +F+ G + ++ Sbjct: 476 RVFNGGGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRFEALQSFRNGEVDFLL 535 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 A+D+AARGLD+ V V N+++P YIHR+GRT RAG G++ + + + D K Sbjct: 536 ATDIAARGLDVLGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFITEADRK 590 >gi|302388261|ref|YP_003824083.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1] gi|302198889|gb|ADL06460.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum WM1] Length = 572 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 219/369 (59%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L +++ AV D G+ + +PIQ + IP+ + D+ G AQTGTGKTA+F +P+L Sbjct: 19 FDELQLDERILRAVADMGFEEASPIQAQAIPVQAEGRDIIGQAQTGTGKTAAFGIPLL-- 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 +K +V+ + + L PTRELA QVAD + K + + V + GG Q + L+ Sbjct: 77 -QKIDPKVKKLQAVALCPTRELAIQVADEIRRLAKYMHGVKVVPIYGGQDIVKQIRSLKD 135 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH R + +++ +++DEAD ML+MGF+ ++ I S +P RQT+ Sbjct: 136 GTQIIIGTPGRVMDHMRRKTVKFDHVHTVIMDEADEMLNMGFLEDMETILSQLPEERQTV 195 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 +FSATM + +++ F Q+P ++V T + + V ++ C LL Sbjct: 196 MFSATMPPAIMEIARKFQQDPVTVKVVKKELTVPKVTQYYYEVKPKSKVEVMCRLLDMY- 254 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 K + FCN KK V L +L+ +G+ +HG++ Q R +++ +F+ G +++ Sbjct: 255 ----APKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQIQRDRVMGSFRNGKTEIL 310 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G AF+ V +++ + Sbjct: 311 VATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRD 370 Query: 360 IEKLIEKKV 368 I++ + K+ Sbjct: 371 IQRYCKTKI 379 >gi|56413419|ref|YP_150494.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362342|ref|YP_002141979.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127676|gb|AAV77182.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093819|emb|CAR59302.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 457 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 212/355 (59%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VSLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRQLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|307262511|ref|ZP_07544156.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306867888|gb|EFM99719.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 449 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 213/368 (57%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 8 MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ + + + L++A + GG+ ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL ++ L NP +I+ + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + M+ I+F ++++V L +L K+G + G++ Q R + ++ KEG + + Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV +V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I + E+ Sbjct: 366 KIRRYTEE 373 >gi|311898243|dbj|BAJ30651.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054] Length = 884 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 132/349 (37%), Positives = 204/349 (58%), Gaps = 18/349 (5%) Query: 31 TIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRARVRM----PRTLILEP 80 T+P+ L HDV G A+TGTGKT F LP++ + GRA P+ LI+ P Sbjct: 2 TLPVALSGHDVIGQAKTGTGKTLGFGLPLIERVVVQADVAAGRATAEQLSDGPQALIVVP 61 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 TREL QV ++ + GK ++ V + GG +E Q + L++G D+++ TPGR+LD + Sbjct: 62 TRELCTQVTNDLQTAGKVRDVRVLAVYGGRAYEPQVEALKKGVDIVVGTPGRLLDLAGQR 121 Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200 KL ++ + LV+DEAD MLD+GF+P ++ I +++P RQTLLFSATM ++ ++ ++ Sbjct: 122 KLDLSKVRALVLDEADEMLDLGFLPDVEKIITMLPAKRQTLLFSATMPGQVISLARRYMS 181 Query: 201 NPKRIEVNTPSSTAETI----EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256 P I P T T+ +H F A K ++ ++LQ+ D +IFC K+ Sbjct: 182 QPTHIRAAAPDDTGTTVANIEQHIF---RAHSLDKVEMVSRILQA-DGRGLAMIFCRTKR 237 Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316 ++ L K+GF+ A+HG++ Q +R + L F+ G + ++V +D+AARG+D+ V H Sbjct: 238 TAADVAEQLTKRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTH 297 Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 V N+ + + Y+HRIGRTGRAG G A TLV +DI I K +E Sbjct: 298 VINYQCTDDEKTYLHRIGRTGRAGASGTAVTLVDWDDIPRWQLINKALE 346 >gi|189460629|ref|ZP_03009414.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136] gi|189432588|gb|EDV01573.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136] Length = 637 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 221/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + GY P P+Q + IP +L R+DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSAEIRQAIEEMGYENPMPVQEEVIPYLLGNRNDVVALAQTGTGKTAAFGLPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + R+P+ L+L PTREL Q+A + Y K +L + + GG E+Q + L+ Sbjct: 64 KIDVTK---RIPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIESQIRSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G +++ TPGR++D R + I +V+DEAD ML+MGF I I VP R T Sbjct: 121 QGVHIIVATPGRLIDLMERKVARLETIRDVVMDEADEMLNMGFTDSINAILEQVPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM+ E+ ++++ +L N K I + T + ++ + H +A+ K L++++ Sbjct: 181 LMFSATMSPEIARIAKTYLHNAKEITIGTKNEGSKNVHHIAYIVHAK--DKYLALKRVVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L + G++ ++HG + Q R ++ F++ +QL+V Sbjct: 239 YYPQI-YGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRYLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVNDLTHVINYALPDDTESYTHRSGRTGRAGKTGISIAIINLREKGKMREI 357 Query: 361 EKLIEKK 367 E++I KK Sbjct: 358 ERIINKK 364 >gi|51258614|gb|AAH78667.1| DDX42 protein [Homo sapiens] Length = 919 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 236 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 295 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 296 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 351 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 352 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 411 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 412 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 471 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 472 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 530 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 531 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 587 >gi|238797547|ref|ZP_04641044.1| DEAD/DEAH box helicase domain protein [Yersinia mollaretii ATCC 43969] gi|238718544|gb|EEQ10363.1| DEAD/DEAH box helicase domain protein [Yersinia mollaretii ATCC 43969] Length = 612 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/323 (38%), Positives = 206/323 (63%), Gaps = 6/323 (1%) Query: 44 IAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LT 102 +AQTG+GKTA+F LP+L + +A ++ P+ L+L PTRELA QVA+ + K+ N + Sbjct: 1 MAQTGSGKTAAFGLPLLHNI---KAELKAPQVLVLAPTRELAIQVAEALSSFSKDINGVN 57 Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162 V L GG ++ Q + L +G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MG Sbjct: 58 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMG 117 Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222 FI ++ I + +P QT LFSATM + +++++ F+++P+ + + + +T I F Sbjct: 118 FIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFW 177 Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 Y+KK AL+ + L+S+D IIF K + + +LE+ G+S A++G+++Q Sbjct: 178 RVGGGYNKKEALV-RFLESED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQS 235 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R + L K+G + +++A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR Sbjct: 236 LREQTLDRLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295 Query: 343 GKAFTLVAKEDIKHIDAIEKLIE 365 G+A V + + + IE+ ++ Sbjct: 296 GRALLFVENRERRLLQNIERTMK 318 >gi|300175700|emb|CBK21243.2| unnamed protein product [Blastocystis hominis] Length = 485 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 147/395 (37%), Positives = 226/395 (57%), Gaps = 14/395 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR---HDVCGIAQTGTGKTASFVLPM 59 F+D G+ + A+ + G+ P+ IQ + + LQ D+ IA+TG+GKT +F +P+ Sbjct: 54 FSDYGVCDTLCQAIDNLGWKHPSSIQRDVLKIALQEDQNKDIIAIAETGSGKTGAFAIPI 113 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + L R+ LI+ PTRELA Q+++ FE G + L A+++GGI Q L Sbjct: 114 IQRLIDNPQRMY---ALIVTPTRELAFQISEQFEALGSSVGLKTAVIVGGIDMVQQALAL 170 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 R V++ TPGR++DH K +N ++ LV+DEADR L M F I I S P R Sbjct: 171 ARKPHVVVGTPGRLVDHLENTKGFSLNTMKYLVLDEADRCLSMDFEEAIDKILSCFPKER 230 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATMT ++ K+ LQ+P +I+V++ T T+ ++ A+Y K+C L Sbjct: 231 VTYLFSATMTQKVVKLQRASLQDPVKIQVSSKYQTVSTLIQQYLFIPAKY-KECYL--AF 287 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ K+ I+F + + L L GF I+GN+ Q R+ L+ FKEG + Sbjct: 288 IMNEFRGKSTILFVSTCSSSQLLTLFLRNLGFKAVCINGNLSQVKRLGALNKFKEGARNI 347 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RGLDIP+V V N+D+P ++Y+HR+GRT RAG+ G+A T V + D++ Sbjct: 348 LIATDVASRGLDIPEVDLVVNYDIPGNGKDYVHRVGRTARAGKSGRAITFVTQYDVESYQ 407 Query: 359 AIEKLIEKKVDWL----NGDLSSLNPPLEKIDIAQ 389 IEKLIEK++D N L+ L E + IAQ Sbjct: 408 RIEKLIEKRLDAYPCSENEALTYLQTTTEALQIAQ 442 >gi|307610952|emb|CBX00571.1| hypothetical protein LPW_22891 [Legionella pneumophila 130b] Length = 468 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 223/373 (59%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L +++ ++ + Y TPIQ++++P++L+ D+ A+TG+GKTA+F L +L Sbjct: 11 LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLL 70 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ V+ L+L PTRELA QV+ + N+ + L GGIP + Q L Sbjct: 71 NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDSL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA +++ TPGRIL H L ++ ++ LV+DEADRMLDMGF I+NI S+ P RQ Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQRQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +E++++S+ F++NPK + V TP + +H + T + ++K LL+ LL Sbjct: 188 TLLFSATYPEEIKQLSKQFMKNPKEVYVETPLDEIDIEQHFYEVT--KQTQKFPLLKSLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + +IFCN K+ + + L +GFS A++G+++Q R + F + ++ Sbjct: 246 LHYQPV-SVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSIL 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI ++ V NFD+ + +IHRIGRTGRAG G A ++V D + I A Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364 Query: 360 IEKLIEKKVDWLN 372 IE + W N Sbjct: 365 IEDNYPHPIHWGN 377 >gi|190151364|ref|YP_001969889.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264721|ref|ZP_07546300.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189916495|gb|ACE62747.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306869917|gb|EFN01682.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 445 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 8 MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ + + + L++A + GG+ ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL ++ L NP +I+ + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + M+ I+F ++++V L +L K+G + G++ Q R + ++ KEG + + Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEGVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV +V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 366 KIKRYAEE 373 >gi|90580587|ref|ZP_01236392.1| putative ATP-dependent RNA helicase SrmB [Vibrio angustum S14] gi|90438245|gb|EAS63431.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum S14] Length = 416 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 215/370 (58%), Gaps = 7/370 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF++L L +++ A+ + GY +PT +Q + IP L DV A TGTGKTA+F+LPM+ Sbjct: 3 DFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQ 62 Query: 62 ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ R R R LIL PTRELA QVAD K L V + GGI ++ + L Sbjct: 63 HLQDFPRKRPGPARILILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDEHAEMLG 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+++ TPGR++++ K IE L++DEADRMLDMGF ++ + + RQ+ Sbjct: 123 KTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKIVERLNHECRWRRQS 182 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQL 238 LLFSAT+ + +++ SE L P +EVN PS H K ALL+ + Sbjct: 183 LLFSATLEGKGVREFSETILNEP--VEVNADPSRRERKKIHQMYLRCDNMDHKLALLENI 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ Q + IIF ++ + L LE G I G + Q +R +++ F++G + + Sbjct: 241 IKEQ--AERTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMITRFRDGVVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+PDV HV NFD+P AE Y+HRIGRT RAG+ G A +LV D I+ Sbjct: 299 LIATDVAARGIDLPDVSHVINFDLPRTAEVYVHRIGRTARAGKKGTAISLVEAHDQSMIE 358 Query: 359 AIEKLIEKKV 368 I + ++++V Sbjct: 359 RISRYMKEEV 368 >gi|183600257|ref|ZP_02961750.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827] gi|188020045|gb|EDU58085.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827] Length = 428 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 221/373 (59%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F+D L PKV+ A+ G+ TPIQ T+P ++ DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT +V PR LI+ PTRELA Q+ + ++ + L + L GG ++ Q K Sbjct: 71 LLTHPSIEGKKVNQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 L+ G D+LI T GR++D+ +G + +N ++++V+DEADRM D+GFI I+ + +P Sbjct: 131 LQNGVDILIGTTGRLIDYAKQGHIDLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPAVT 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R LLFSAT++ +++++ + +P+ IEV T I E F Y +K LL Sbjct: 191 ERLNLLFSATLSYRVRELAFEQMNSPEYIEVEPLQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ + IIF N K + L G V + G++ Q+ R++IL F +G Sbjct: 248 QTLLE-EEWPERCIIFANTKHRCDEIWAHLAADGHRVGLLTGDVAQKKRLRILEEFTQGN 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE+ I+ + Sbjct: 367 NLPAIEEYIQHSI 379 >gi|254671737|emb|CBA09550.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha153] Length = 399 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 140/359 (38%), Positives = 209/359 (58%), Gaps = 11/359 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L ++ AV GY PTPIQ + IP L+ D+ AQTG+GKTA+F+LP L Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQK 64 Query: 63 LEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNKKL 119 L K + + PR L+L PTRELAAQV N Y KN + TV++ +GG F Q + L Sbjct: 65 LTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSI-VGGASFGYQTRAL 123 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++D GK+ +E+L++DEADRMLDMGFI I+ I P RQ Sbjct: 124 SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQ 183 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT + K++ ++P+ IEV + E ++ + LL +L Sbjct: 184 TLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNR--LLDHIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + +IF + K + L ++GF+ +HG++ Q R + L + ++G +++ Sbjct: 242 RDAD-IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKIL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG--RTGRAGRHGKAFTLVAKEDIKH 356 VA+D+AARG+D+P + HV N+D+P +AE+Y+HRIG R+GR HG E I+ Sbjct: 301 VATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGPYRSGRT--HGYCDYFCRSERIRQ 357 >gi|255548421|ref|XP_002515267.1| hypothetical protein RCOM_1346600 [Ricinus communis] gi|223545747|gb|EEF47251.1| hypothetical protein RCOM_1346600 [Ricinus communis] Length = 791 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 216/356 (60%), Gaps = 4/356 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D S +++ A++ GY KPT IQ + +P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 226 FEDCSFSMQLMNAIVKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVH 285 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P +I PTRELA Q+ +K+ K++ + V+ + GG+ Q K+L+ Sbjct: 286 IMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFSKSHGIRVSAVYGGMSKLEQFKELK 345 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+++ TPGR++D L M+ LV+DEADRM D+GF P I++I + RQT Sbjct: 346 AGCDIVVATPGRLIDLLKMKALNMSKATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 405 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++K++ L +P R+ V E I + K L ++L Sbjct: 406 LLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDAEKLPWLFEKLPG 465 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F ++K V + L ++GF V A+HG+ DQ SRM+IL FK G +++ Sbjct: 466 MIDD-GDVLVFASKKATVDEIESQLAQKGFKVAALHGDKDQASRMEILQKFKSGVYHVLI 524 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 A+D+AARGLDI + V NFD+ + ++HRIGRTGRAG + G A+TL+ +++ + Sbjct: 525 ATDVAARGLDIKSLKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEAR 580 >gi|119614684|gb|EAW94278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_c [Homo sapiens] Length = 936 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 253 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 312 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 313 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 368 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 369 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 428 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 429 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 488 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 489 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 547 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 548 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 604 >gi|325285240|ref|YP_004261030.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga lytica DSM 7489] gi|324320694|gb|ADY28159.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM 7489] Length = 602 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/365 (35%), Positives = 222/365 (60%), Gaps = 8/365 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F LGL ++ A++D G+ P+ +Q K IP++L + D+ +AQTGTGKTA+F P++ Sbjct: 4 FEALGLDKSLLDAIVDLGFESPSEVQEKAIPILLNEDTDLVALAQTGTGKTAAFGFPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 +K + R + LIL PTREL Q+ + + Y K L V + GG Q ++ Sbjct: 63 --QKIDSSSRTTQGLILSPTRELCLQITNELKAYSKYEKGLNVVAIYGGASITDQANQIR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGA +++ TPGRI D +RG + ++ ++ V+DEAD ML+MGF I++I S P + T Sbjct: 121 RGAQIVVATPGRIKDMISRGMVNISKLDYCVLDEADEMLNMGFYEDIKDILSNTPDEKFT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM E+ +++ F+ NP+ I V + ++ A T++H + + + L++L Sbjct: 181 WLFSATMPREVSTIAKKFMHNPQEITVGSKNAGATTVQHEYYVVGGR--DRYPALKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + ++FC K++ + L + G++ A+HG++ Q R +++ F++ IQ++V Sbjct: 239 TNPDIFS-VVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQMLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P+ E Y HR GRTGRAG+ G + +V + +++ I A+ Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVTRSELRKIKAL 357 Query: 361 EKLIE 365 E+ ++ Sbjct: 358 ERKLQ 362 >gi|304383161|ref|ZP_07365635.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii DSM 16973] gi|304335738|gb|EFM01994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii DSM 16973] Length = 608 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 216/369 (58%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+ P P+Q + IP +L +DV +AQTGTGKTA++ LP++ Sbjct: 4 FEELGVSEEIRHAIEELGFEHPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAYGLPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + + L+L PTREL Q+AD+ + K N L V + GG E Q + L Sbjct: 64 KID---TESKTTQALVLSPTRELCLQIADDLTAFSKYINGLHVVPVYGGASIETQIRSLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D +RG + N+ +V+DEAD ML+MGF I I +P R T Sbjct: 121 HGVQIIVATPGRLIDLMHRGVAKLENVSNVVLDEADEMLNMGFSDSINEIFEGIPADRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++K++ N+L + K I V + + AE + H + A+ K L++++ Sbjct: 181 LLFSATMSREIEKIARNYLHDHKEIVVGSRNEGAENVNHIYYMVNAK--DKYLALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K+ + L G++ +HG++ Q R + F++ Q +V Sbjct: 239 YYPHI-FAIIFCRTKRETQEVADKLIHDGYNAEPLHGDLSQPQRDLTMQKFRQHMTQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + AI Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDVESYTHRSGRTGRAGKKGTSIAIIHTRERSKMRAI 357 Query: 361 EKLIEKKVD 369 EK+I KK D Sbjct: 358 EKIIGKKFD 366 >gi|206725493|ref|NP_001126368.1| ATP-dependent RNA helicase DDX42 [Pongo abelii] Length = 942 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|322799398|gb|EFZ20748.1| hypothetical protein SINV_08125 [Solenopsis invicta] Length = 764 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 212/356 (59%), Gaps = 8/356 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F G ++ + Y +PTPIQ + +P L D+ GIA+TG+GKTA+F+ PML Sbjct: 256 FGHFGFDDALIKTIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVH 315 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P LIL PTREL+ Q+ +K+GK YN+ V GG Q+K LE Sbjct: 316 IMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALE 375 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA++++ TPGR++D + + LV+DEADRM DMGF P +++I + V RQT Sbjct: 376 SGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 435 Query: 181 LLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +++K++ + L +P RI + + + + +H + K LLQ L+ Sbjct: 436 LLFSATFKKKVEKLARDILTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNLV 495 Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + S ++ +IF +K N L ++L+ + F V +HG++DQ R K+++ FK+ + Sbjct: 496 EFLSAGSL---LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQLERNKVITAFKKKDVS 552 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G AFTLV ++D Sbjct: 553 TLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTAFTLVTEKD 608 >gi|289192981|ref|YP_003458922.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp. FS406-22] gi|288939431|gb|ADC70186.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp. FS406-22] Length = 362 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 230/372 (61%), Gaps = 14/372 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 M+F +L LS ++ A+ + G+ KPT IQ+K IPL L + ++ A+TG+GKTA+F +P+ Sbjct: 1 MNFNELNLSDNILNAIKNKGFEKPTDIQMKVIPLFLNDKGNIVAQARTGSGKTAAFAIPL 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++ + +IL PTRELA QVAD E N NL +A + GG Q K L Sbjct: 61 IELVNENNG----IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL 116 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + A++++ TPGRILDH NRG L + N++ ++DEAD ML+MGF+ ++ I + ++ Sbjct: 117 -KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFVEDVERILNACNRDKR 175 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM E+ +++ ++ + I+ ++ IE ++ +++ +L ++L Sbjct: 176 ILLFSATMPREILNLAKKYMGDYSFIKAKINAN----IEQSYIEV--NENERFEVLCRIL 229 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +++D G++FC KK+ L + L GF AIHG+++Q R K++ FK+ I+++ Sbjct: 230 KNKDFY--GLVFCKTKKDTKELANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKRIKIL 287 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+ +RG+D+ D+ V N+ +P E+Y+HRIGRTGRAG+ GKA +++ + + K + Sbjct: 288 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLKY 347 Query: 360 IEKLIEKKVDWL 371 IE++ + K+ L Sbjct: 348 IERMTKLKIRKL 359 >gi|57101724|ref|XP_541930.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 isoform 1 [Canis familiaris] Length = 488 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P T E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q+ QD ++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 IQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I+K+++ L+ + + + L ++++ R+ I ++ FD +K+ Sbjct: 359 LVHAIEEQIKKQLEELSVEEAKVLQILTQVNV-----VRRECEIKLEAANFDEKKE 409 >gi|238783510|ref|ZP_04627532.1| DEAD/DEAH box helicase domain protein [Yersinia bercovieri ATCC 43970] gi|238715565|gb|EEQ07555.1| DEAD/DEAH box helicase domain protein [Yersinia bercovieri ATCC 43970] Length = 612 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/323 (38%), Positives = 206/323 (63%), Gaps = 6/323 (1%) Query: 44 IAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LT 102 +AQTG+GKTA+F LP+L + +A ++ P+ L+L PTRELA QVA+ + K+ N + Sbjct: 1 MAQTGSGKTAAFGLPLLHNI---KAELKAPQVLVLAPTRELAIQVAEALSSFSKDINGVN 57 Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162 V L GG ++ Q + L +G +++ TPGR+LDH RG L ++N+ LV+DEAD ML MG Sbjct: 58 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMG 117 Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222 FI ++ I + +P QT LFSATM + +++++ F+++P+ + + + +T I F Sbjct: 118 FIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFW 177 Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 Y+KK AL+ + L+S+D IIF K + + +LE+ G+S A++G+++Q Sbjct: 178 RVGGGYNKKEALV-RFLESED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQS 235 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R + L K+G + +++A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR Sbjct: 236 LREQTLDRLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295 Query: 343 GKAFTLVAKEDIKHIDAIEKLIE 365 G+A V + + + IE+ ++ Sbjct: 296 GRALLFVENRERRLLQNIERTMK 318 >gi|119962035|ref|YP_948481.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1] gi|119948894|gb|ABM07805.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1] Length = 566 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 214/370 (57%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD + +V ++ DAG P PIQ T+P+ L HD+ G A+TGTGKT F +P L Sbjct: 39 FADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQR 98 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + G A++ +P + L++ PTRELA QVA++ + + N +A + GG +E Q Sbjct: 99 VAGRDDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAASRKRNARIATIYGGRAYEPQ 158 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L++G ++++ TPGR++D + + L + N++++++DEAD MLD+GF+P ++ + + P Sbjct: 159 IDALQKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEADEMLDLGFLPDVETLIAGTP 218 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 RQTLLFSATM + ++ ++ P I P+ T Y +S K + Sbjct: 219 AVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPNDEGLTKRDIRQLIYRAHSMDKTEV 278 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + IIF K+ + L +GF+ AIHG++ Q +R + L F+ Sbjct: 279 VARILQARGRGRT-IIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNN 337 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ + Y+HR+GRTGRAG G A T V +D+ Sbjct: 338 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDM 397 Query: 355 KHIDAIEKLI 364 I K + Sbjct: 398 PRWGLINKAL 407 >gi|28199914|ref|NP_780228.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa Temecula1] gi|32363278|sp|Q879Y6|RHLB_XYLFT RecName: Full=ATP-dependent RNA helicase rhlB gi|28058045|gb|AAO29877.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1] Length = 543 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 224/375 (59%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F+ L P ++ + AG+ TPIQ T+P+ L D+ G AQTGTGKT +F++ ++ Sbjct: 9 LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 68 Query: 61 TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L V PR LIL PTRELA Q+ ++ K+G N L AL+ GG+ ++ Q Sbjct: 69 NRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQR 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +GADV+I TPGR++D+ + +++ + EI V+DEADRM D+GFI I+ I +P Sbjct: 129 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 188 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +RQTLLFSAT++ + +++ ++ P+++ T S T + + +K Sbjct: 189 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIY--FPAEEEKIP 246 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + M+ ++F N K V + +L++ G+ V + G++ QR R +L+ F++ Sbjct: 247 LLLGLLSRNEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 305 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 306 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 365 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 366 AMSLPDIEAYIEQKI 380 >gi|291537820|emb|CBL10931.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis XB6B4] Length = 535 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 217/368 (58%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P+V+ A+ + G+ + TPIQ + IP+V+ DV G AQTGTGKTASF +P+L Sbjct: 11 FDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ + ++ +IL PTRELA QVAD K K + + + + GG Q K L+ Sbjct: 71 VDPNNKKTQV---IILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKALKG 127 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 GA ++I TPGR++DH R + + +V+DEAD ML+MGF I+ I +P RQT Sbjct: 128 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 187 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM + +++ + + I+V T IE + + K +L +LL Sbjct: 188 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDV--KRKDKIEVLTRLLD 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K ++FCN K+ V L L+ +G+ +HG++ Q R +++ F+ G ++++ Sbjct: 246 YYNP-KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILI 304 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G+AFT V +++ + I Sbjct: 305 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 364 Query: 361 EKLIEKKV 368 + + K+ Sbjct: 365 MRYCKTKI 372 >gi|114669834|ref|XP_001147587.1| PREDICTED: DEAD box polypeptide 42 protein isoform 4 [Pan troglodytes] Length = 775 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 92 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 151 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 152 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 207 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 208 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 267 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 268 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 327 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 328 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 386 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 387 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 443 >gi|89900206|ref|YP_522677.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118] gi|89344943|gb|ABD69146.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118] Length = 623 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 148/417 (35%), Positives = 235/417 (56%), Gaps = 55/417 (13%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH----------DVCGIAQTGTGKT 52 F LGL+P+++ AV D G+ +PT +Q+KTIPL +Q H D+ +QTG+GKT Sbjct: 54 FVTLGLAPELIQAVKDLGFTQPTTVQLKTIPLAMQGHSASDDAARFIDLMVSSQTGSGKT 113 Query: 53 ASFVLP----MLTILEKGRARVR-----------------------------------MP 73 A+F+LP +LT + + A+ R P Sbjct: 114 AAFLLPVLHTLLTQMAQAEAKERSDFERAVADAAAKGEAPPKRAKRKDPTNPRHFAPAAP 173 Query: 74 RTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132 LI+ PTRELA QVA D + L VA ++GG+P++ Q KL+ A++++ TPGR Sbjct: 174 GALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQN-ANLVVATPGR 232 Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192 +LD ++ ++ ++ LV+DEADRMLD+GF + I L +QT++FSAT +Q Sbjct: 233 LLDLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTIERKQTMMFSATFAPRIQ 292 Query: 193 KVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251 +++ ++ P+R+++++P I + F A AQ+ +K LL L+ T+ ++F Sbjct: 293 QLASRVMREPQRLQIDSPQEKHANISQKLFWADNAQHKRK--LLDHWLRDT-TINQALVF 349 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 + + L + L+++GFS A+HG + Q R + L ++G +Q++VA+D+AARG+D+ Sbjct: 350 ASTQIECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDV 409 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 P V HVFNF +P +AE+Y HRIGRTGRAGR G A T D + I IE +++ Sbjct: 410 PTVTHVFNFGLPMKAEDYTHRIGRTGRAGRDGIAVTFAEFRDRRKIMDIEHYTHQQL 466 >gi|75061727|sp|Q5R7D1|DDX42_PONAB RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD box protein 42 gi|55731230|emb|CAH92329.1| hypothetical protein [Pongo abelii] Length = 942 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|45446743|ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens] gi|45446747|ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens] gi|74750541|sp|Q86XP3|DDX42_HUMAN RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD box protein 42; AltName: Full=RNA helicase-like protein; Short=RHELP; AltName: Full=RNA helicase-related protein; Short=RNAHP; AltName: Full=SF3b DEAD box protein; AltName: Full=Splicing factor 3B-associated 125 kDa protein; Short=SF3b125 gi|29420431|dbj|BAC66466.1| RNA helicase-related protein [Homo sapiens] gi|62205357|gb|AAH93081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Homo sapiens] gi|119614683|gb|EAW94277.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Homo sapiens] gi|168277556|dbj|BAG10756.1| ATP-dependent RNA helicase DDX42 [synthetic construct] Length = 938 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|326479821|gb|EGE03831.1| ATP-dependent RNA helicase DBP2 [Trichophyton equinum CBS 127.97] Length = 536 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 215/373 (57%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPTPIQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 122 FDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 181 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 182 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 237 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 238 RDLTRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 297 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT ++++++ +FLQ+ ++ + + + +A V +++ K+ +++ Sbjct: 298 DRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQALSANHRITQIVEVVSEFEKRDRMIK 357 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + K+ + IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 358 HLERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 417 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N D PN +E+Y+HRIGRTGRAG +G A TL E+ K Sbjct: 418 SPIMVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAK 477 Query: 356 HI-DAIEKLIEKK 367 D ++ L E K Sbjct: 478 QARDLVKILTESK 490 >gi|255580688|ref|XP_002531166.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223529236|gb|EEF31209.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 585 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/379 (38%), Positives = 217/379 (57%), Gaps = 15/379 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA++ L + + YVKPTP+Q IP++L D+ AQTG+GKTA+F P+++ Sbjct: 130 FAEIDLGEALNQNIRRCKYVKPTPVQRNAIPIILAGRDLMACAQTGSGKTAAFCFPIISG 189 Query: 62 -ILEKGRARVRMPRT-----LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E+ R R PRT LIL PTREL+ Q+ D +K+ + V + GG P Q Sbjct: 190 IMREQYVQRPRGPRTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQ 249 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174 ++LERG D+L+ TPGR++D R ++ + I L +DEADRMLDMGF P I+ I + Sbjct: 250 LRELERGVDILVATPGRLVDLLERARISLQMIRYLALDEADRMLDMGFEPQIRKIVEQMD 309 Query: 175 ---PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC--FVATYAQYS 229 P RQT+LFSAT E+Q+++ +FL + + V S+ + I FV + S Sbjct: 310 MPPPGRRQTMLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIVQRVEFVHETDKRS 369 Query: 230 KKCALLQQLLQSQDTMKNGI--IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 LL +++ +K+ + +F KK +L + L GF IHG+ Q+ R Sbjct: 370 HLMDLLHAQRETEINIKHSLTLVFVETKKGADSLENWLCVNGFPATTIHGDRTQQEREMA 429 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G A Sbjct: 430 LRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATA 489 Query: 348 LVAKEDIKHIDAIEKLIEK 366 + ++ + L+++ Sbjct: 490 FFNENNLSLARPLADLMQE 508 >gi|332243110|ref|XP_003270725.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Nomascus leucogenys] Length = 938 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|291406357|ref|XP_002719521.1| PREDICTED: DEAD box polypeptide 42 protein [Oryctolagus cuniculus] Length = 935 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|167549858|ref|ZP_02343616.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325031|gb|EDZ12870.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 457 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/355 (39%), Positives = 212/355 (59%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF Q L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|297620018|ref|YP_003708123.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus voltae A3] gi|297378995|gb|ADI37150.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3] Length = 584 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 210/369 (56%), Gaps = 9/369 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59 M+F DL +S ++ + + G+ + T IQ K IP+VL DV G AQTGTGKT +F +P+ Sbjct: 1 MEFRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPI 60 Query: 60 L-----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + I E GR + + +IL PTRELA QV D + K L + + GG E Sbjct: 61 IQKIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNKLRLCTVYGGQSIEK 120 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q KL G D++I TPGR++DH R L +N I+ LV+DEAD ML++GFI ++ I S Sbjct: 121 QINKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKC 180 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 + LLFSAT+ + ++ E + + I V + + T E E + + K L Sbjct: 181 KEDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYE--VKEHDKFEL 238 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L++++ + G++FC K +V L L + +S A+HG+++Q+ R LS FK Sbjct: 239 LRRIIDKEPGF-YGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSH 297 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I +M+A+D+AARG+DI ++ HV N+D+P E Y+HRIGRTGRAG G A T V + Sbjct: 298 KIDIMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREF 357 Query: 355 KHIDAIEKL 363 + I K+ Sbjct: 358 RRFKYIMKI 366 >gi|253771018|gb|ACT35657.1| vasa-like protein [Haliotis asinina] Length = 763 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/362 (38%), Positives = 212/362 (58%), Gaps = 17/362 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + GL P + V A Y KPTP+Q +IP++ D+ AQTG+GKTA+F+LP LT Sbjct: 309 FDEAGLYPTFLKNVRKAKYEKPTPVQKYSIPIIAAGRDLMACAQTGSGKTAAFLLPTLTC 368 Query: 63 LEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + K + V+ P+ +I+ PTREL Q+ + K+ + + ++ GG Q Sbjct: 369 MVKEGLTTSQFSEVQEPQAIIVAPTRELVVQIHSDARKFSRGTEVRPVVVYGGTSVGHQL 428 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SL 173 +++ERGA V++ TPGR+LD +GK+ + ++ L++DEADRMLDMGF P I+ + + Sbjct: 429 REVERGAHVVVGTPGRLLDFIEKGKIGLGKVKFLILDEADRMLDMGFEPCIRKLVEQLGM 488 Query: 174 VPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSK 230 P T RQTL+FSAT E+QK++ +FL + + V +E F V + K Sbjct: 489 PPKTQRQTLMFSATFPTEIQKLAADFLNDYLFLTVGRVGGANTDVEQNFFEVDRLQKREK 548 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 C++L ++ ++F QK+N L L + GF +IHG+ QR R + L + Sbjct: 549 LCSIL-----TESGSDKTLVFVEQKRNADFLASYLSQSGFPTTSIHGDRLQREREEALRD 603 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK GT +++A+ +AARGLDIP+V HV N+D+P+ + Y+HRIGRTGR G GKA + + Sbjct: 604 FKRGTAPILIATSVAARGLDIPEVKHVVNYDLPSSIDEYVHRIGRTGRCGNLGKATSFYS 663 Query: 351 KE 352 + Sbjct: 664 HD 665 >gi|297847866|ref|XP_002891814.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp. lyrata] gi|297337656|gb|EFH68073.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp. lyrata] Length = 501 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/386 (34%), Positives = 214/386 (55%), Gaps = 17/386 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D+G V+ + AG+ +PTPIQ + P+ ++ D+ GIA+TG+GKT S++LP + Sbjct: 101 FRDVGFPDYVLEEIKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTISYLLPAIVH 160 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 IL G P L+L PTRELA Q+ K+G + + + GG+P Q Sbjct: 161 VNAQPILAPGDG----PIVLVLAPTRELAVQIQQEASKFGSSSKIKSTCIYGGVPKGPQV 216 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L++G +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 217 RDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP 276 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCA 233 RQTL +SAT E++++S+ FL NP ++ + + A V ++ Y+K Sbjct: 277 DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVK 336 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ ++ + +F + KK + L G+ +IHG+ Q R +LS F+ Sbjct: 337 LLEDIMDGSRIL----VFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRS 392 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +M A+D+AARGLD+ DV +V N+D P E+Y+HRIGRTGRAG G A+T + Sbjct: 393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 + + ++E+ ++ +L+S+ Sbjct: 453 ARFAKELSNILEEAGQKVSPELASMG 478 >gi|149757285|ref|XP_001503455.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 isoform 1 [Equus caballus] Length = 483 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 151/374 (40%), Positives = 215/374 (57%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSSTFSIKKIRFLVLDEADRLLEQGCTDFTVDLEAILAAVPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P T E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q+ QD ++ IIF N K LC L K GF A+H + Q+ R L+ FK Sbjct: 239 IQNFQDEHQDWSIIIFTNTCKTCQILCMMLRKFGFPAVALHSTMRQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVD 369 + AIE+ I+KK++ Sbjct: 359 LVHAIEEQIKKKLE 372 >gi|126667283|ref|ZP_01738256.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17] gi|126628228|gb|EAZ98852.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17] Length = 463 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 151/424 (35%), Positives = 236/424 (55%), Gaps = 12/424 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F+DL L ++ A+ G+ TPIQ +T+P L D+ G AQTGTGKTA+F++ + Sbjct: 44 FSDLNLDHRLQQAIAAIGFEYCTPIQAETLPWTLACQDLIGQAQTGTGKTAAFLITAIQT 103 Query: 61 ---TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 T +E + PR L L PTRELA Q+A + E+ + V ++GG+ ++ Q Sbjct: 104 MLETPIEDSKRFASEPRVLALAPTRELAMQIAKDAEQLCAHTGHKVVTVVGGMHYDKQRD 163 Query: 118 KLERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVP 175 +L+ D+L+ TPGR++D + ++ I+IL++DEADRMLDMGFIP ++ I P Sbjct: 164 QLQNEVVDILVATPGRLIDFLGSQDVFLDQIDILILDEADRMLDMGFIPDVKRIIRKCTP 223 Query: 176 -FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTLLFSAT ++ ++ + Q+ + +E+ TAE +E +K + Sbjct: 224 KEDRQTLLFSATFNQDVLNLASMWTQSAEFVEIEPEQKTAERVEQTVY--LVGDDEKLRV 281 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L+ + K ++F N++ +L L QG SV + G I Q R+K L FK G Sbjct: 282 LVNYLKRPEVDK-ALVFANRRDQCRDLEEDLRNQGVSVSLMSGEIAQAKRLKTLEQFKAG 340 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +IQ++VA+D+A RG+ + V HVFN+++P+ AE+Y+HRIGRTGRAG G + + ++D Sbjct: 341 SIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGSTGVSISFAGEDDS 400 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 + AIEK I +K+ D +L P++ IA+ R P + R N Sbjct: 401 FALPAIEKYIGQKLANEVPD-EALMVPMDNAPIARKRGRRPQGTRPTGNRSSGNRSGNSR 459 Query: 415 SQKS 418 ++S Sbjct: 460 PRRS 463 >gi|119505818|ref|ZP_01627884.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080] gi|119458316|gb|EAW39425.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080] Length = 409 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/392 (36%), Positives = 226/392 (57%), Gaps = 19/392 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L ++ V + G+ +PIQ K +P LQ HD G AQTGTGKTA+F++ + Sbjct: 29 FHDLDLQDSLLRGVAELGFQYCSPIQAKILPHTLQGHDAIGKAQTGTGKTAAFLITIFND 88 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L +G + PR +I+ PTREL Q+A + E GK L +IGG ++ Q K Sbjct: 89 LLCNPPEGERYLAEPRAVIIAPTRELVMQIAADAEDLGKFTGLQTVTMIGGADYQKQLAK 148 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 ++ R D+++ TPGR++D R L ++ +E LV+DEADRMLDMGFIP ++ I P Sbjct: 149 VQSRVVDLVVATPGRLIDFMQRRDLFLDRVETLVLDEADRMLDMGFIPQVKRIVRATPRK 208 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCAL 234 RQTLLFSAT T ++ +++ + +P +E+ +TA + ++ T + K + Sbjct: 209 EDRQTLLFSATFTQDILNLAQQWTFDPVTVEIEPERVATATVDQRVYLVTSHERLK---V 265 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++L+ D + I+F N++ V +L L K G S + G I Q R K L++FK G Sbjct: 266 LLKVLRGPDAVST-IVFANRRDQVRSLHEKLRKAGISCGILSGEITQARRTKTLADFKSG 324 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+A RG+ + V HV N+++P E+Y+HRIGRTGRAG G + + +++D Sbjct: 325 KIAVLVATDVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISISFASEDDA 384 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386 + IE L+ ++ L ++PP + +D Sbjct: 385 FLLPDIETLLGER-------LKCVSPPADLLD 409 >gi|73965191|ref|XP_861211.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 isoform 3 [Canis familiaris] Length = 533 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 92 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 151 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 152 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 207 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 208 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 267 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 268 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 327 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 328 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 386 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 387 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 443 >gi|239946654|ref|ZP_04698407.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes scapularis] gi|239920930|gb|EER20954.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes scapularis] Length = 410 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 213/364 (58%), Gaps = 13/364 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 3 NFNLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLIDSFI 62 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K Y + A+LIGG P Q +L++ Sbjct: 63 KNKTTA-----LILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQLKKNPK 117 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P RQ L+FS Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKRQVLMFS 177 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + +S+ +L NP RI V + A I E ++ ++S+ L +QL + Sbjct: 178 ATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKFSE---LTKQLGNRE 234 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ IIF K++ L L+ + AIHG++ Q R +++ +F++ ++MVA+ Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVAT 291 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ AI++ Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWRAIDR 351 Query: 363 LIEK 366 L+ K Sbjct: 352 LVNK 355 >gi|168241214|ref|ZP_02666146.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447332|ref|YP_002045697.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194405636|gb|ACF65855.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339660|gb|EDZ26424.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 457 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/355 (39%), Positives = 212/355 (59%), Gaps = 8/355 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P++L +DV A+TG+GKTA+F L +L ++ + + L+L Sbjct: 22 GYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRID---VTLFQTQALVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF Q L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGVQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ + ILV+DEADRMLDMGF I + P TRQTLLFSAT + + +S Sbjct: 139 KETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q P RIE++T + IE F T A +K +LLQ LL SQ + ++FCN KK+ Sbjct: 199 QQQPIRIEIDTVDAL-PAIEQQFFETSAH--EKISLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNG 373 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WLN Sbjct: 315 NYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNA 369 >gi|154490038|ref|ZP_02030299.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC 43184] gi|154089480|gb|EDN88524.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC 43184] Length = 607 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 219/369 (59%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG++ ++ A+ + GY P P+Q + IP +L +DV +AQTGTGKTA+F LP Sbjct: 4 FEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGDDNDVIALAQTGTGKTAAFGLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 IL+K P+ L+L PTREL Q+AD+ Y K NL V + GG E+Q K L+ Sbjct: 61 ILQKIDVTTYHPQALVLCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG V++ TPGR+LD NR + ++ ++ +++DEAD ML+MGF I I + VP R Sbjct: 121 RGVHVVVATPGRLLDLMNRKTVDLSLVKNVIMDEADEMLNMGFTDSINAILAEVPENRNM 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+ +++ +++NPK I + + + I + A+ K L+++ Sbjct: 181 LLFSATMPKEIANITKKYMKNPKEIVIGNKNEGNKNIRDIYYMVQAR--DKYLALKRIAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+FC +K + L + G++ ++HG + Q R ++ F+ IQL+V Sbjct: 239 FYPNI-YGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKNIQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ ++ I I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKGKIREI 357 Query: 361 EKLIEKKVD 369 E++I KK + Sbjct: 358 ERIINKKFE 366 >gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649] gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649] Length = 540 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 133/380 (35%), Positives = 216/380 (56%), Gaps = 25/380 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+D + P +V A+ G P PIQ T+P+ L HD+ G A+TGTGKT F +P+L Sbjct: 35 FSDFAIHPDIVSALAAHGITTPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPLLNK 94 Query: 62 ILEKGRARVR------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 ++ +G + P+ L + PTRELA QV+ + E+ GK + V + GG +E Q Sbjct: 95 VIARGDDKWDGFVHKGKPQALAVAPTRELAVQVSADLERAGKARGIRVLTVYGGRAYEPQ 154 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L +G +V++ TPGR++D +G L +++ + +V+DEAD MLD+GF+P ++ + ++ Sbjct: 155 IDALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADEMLDLGFLPDVEKLLAMTS 214 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRI------EVNTPSSTAETIEHCFVATYAQYS 229 RQT+LFSATM + ++ ++ P I E +T + +H + A Sbjct: 215 PGRQTMLFSATMPGAVVALARRYMTQPTHIRAMQEGEGDTSQTVKAITQHVY---RAHAM 271 Query: 230 KKCALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 K +L ++LQ+ NG I+F K+ + L ++GF+ AIHG++ Q +R Sbjct: 272 DKVEMLARMLQA-----NGRGLTIVFSRTKRTAAKVADDLAERGFAAAAIHGDLGQGARE 326 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 + L F+ G + ++VA+D+AARG+D+ +V HV N+ P + Y+HRIGRTGRAG+ G A Sbjct: 327 QALRAFRSGKVDVLVATDVAARGIDVENVTHVINYQCPEDEKTYVHRIGRTGRAGQTGIA 386 Query: 346 FTLVAKEDIKHIDAIEKLIE 365 T V +D+ I K ++ Sbjct: 387 VTFVDWDDLHRWTMINKTLD 406 >gi|296113215|ref|YP_003627153.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4] gi|295920909|gb|ADG61260.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4] gi|326560208|gb|EGE10596.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 7169] gi|326562767|gb|EGE13063.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 103P14B1] gi|326567877|gb|EGE17978.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 12P80B1] gi|326570281|gb|EGE20326.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC8] gi|326573316|gb|EGE23284.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 101P30B1] gi|326576868|gb|EGE26774.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis O35E] Length = 391 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 149/381 (39%), Positives = 231/381 (60%), Gaps = 25/381 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F DL LS ++ AV + + TPIQ + +P L D G AQTGTGKTA+F ++T Sbjct: 8 NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATF---LIT 64 Query: 62 ILEKGRAR------VRM---PRTLILEPTRELAAQV-AD--NFEKYGKNYNLTVALLIGG 109 I+E R +R PR L+L PTRELA Q+ AD ++ + YNL + GG Sbjct: 65 IIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCIT---GG 121 Query: 110 IPFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168 F+ Q ++L +R D+LI TPGRI+D N+G+L ++ +E+ V+DEADRMLDMGFIP I+ Sbjct: 122 SDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIK 181 Query: 169 NITSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 I +P RQ+LLFSAT ++ ++ +L P +E+ S T + I+ F Sbjct: 182 RIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTE 241 Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 + +K + L+Q+L + D++K IIF N+K V L L + V + G++ Q+ R + Sbjct: 242 R--EKTSALKQIL-ADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRER 297 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L FK+G + ++VA+D+A RG+ + DV HV N+ +P+ ++Y+HRIGRTGRAG G + Sbjct: 298 YLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSI 357 Query: 347 TLVAKEDIKHIDAIEKLIEKK 367 + V++ D ++ A+E+ I++K Sbjct: 358 SFVSENDAFNLPALERHIDQK 378 >gi|37197585|dbj|BAC93424.1| DNA and RNA helicase [Vibrio vulnificus YJ016] Length = 441 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 215/368 (58%), Gaps = 5/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P ++ A+ + GY +PT IQ + IP L+ D+ A TGTGKTA+FVLP L Sbjct: 38 FADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPALQY 97 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA QVAD KN +L + + GG+ ++ L Sbjct: 98 LQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILAT 157 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR++++ + IE L++DEADRMLDMGF P + +++ + +QT+ Sbjct: 158 TQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTM 217 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ + ++ + + L +P I+ + I + + K ALL+ ++ Sbjct: 218 LFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSM-EHKLALLKDIIN 276 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +Q + I+F ++ + +L LE + + I G + Q R ++ F++G++ +++ Sbjct: 277 NQ--AERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 334 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PDV HV NFD+P A+ Y+HRIGRT RAG+ G A ++V D +D + Sbjct: 335 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 394 Query: 361 EKLIEKKV 368 + +++ + Sbjct: 395 ARYVKEDI 402 >gi|22125187|ref|NP_668610.1| ATP-dependent RNA helicase SrmB [Yersinia pestis KIM 10] gi|45442294|ref|NP_993833.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Microtus str. 91001] gi|51597216|ref|YP_071407.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP 32953] gi|108808436|ref|YP_652352.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Antiqua] gi|108811359|ref|YP_647126.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Nepal516] gi|145598847|ref|YP_001162923.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Pestoides F] gi|149365400|ref|ZP_01887435.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125] gi|162420447|ref|YP_001607925.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola] gi|165925272|ref|ZP_02221104.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis str. F1991016] gi|165937169|ref|ZP_02225734.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis str. IP275] gi|166008251|ref|ZP_02229149.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212404|ref|ZP_02238439.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua str. B42003004] gi|167399586|ref|ZP_02305110.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421460|ref|ZP_02313213.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423084|ref|ZP_02314837.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470537|ref|ZP_02335241.1| ATP-dependent RNA helicase SrmB [Yersinia pestis FV-1] gi|186896313|ref|YP_001873425.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis PB1/+] gi|218929780|ref|YP_002347655.1| ATP-dependent RNA helicase SrmB [Yersinia pestis CO92] gi|229838271|ref|ZP_04458430.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895533|ref|ZP_04510704.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A] gi|229898835|ref|ZP_04513980.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229901609|ref|ZP_04516731.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|270489798|ref|ZP_06206872.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27] gi|294504499|ref|YP_003568561.1| ATP-dependent RNA helicase [Yersinia pestis Z176003] gi|21958051|gb|AAM84861.1|AE013731_6 ATP-dependent RNA helicase [Yersinia pestis KIM 10] gi|45437158|gb|AAS62710.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str. 91001] gi|51590498|emb|CAH22138.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953] gi|108775007|gb|ABG17526.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|108780349|gb|ABG14407.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua] gi|115348391|emb|CAL21327.1| ATP-dependent RNA helicase [Yersinia pestis CO92] gi|145210543|gb|ABP39950.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F] gi|149291813|gb|EDM41887.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125] gi|162353262|gb|ABX87210.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola] gi|165915032|gb|EDR33644.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis str. IP275] gi|165922879|gb|EDR40030.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis str. F1991016] gi|165992633|gb|EDR44934.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua str. E1979001] gi|166206335|gb|EDR50815.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua str. B42003004] gi|166960949|gb|EDR56970.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052090|gb|EDR63498.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057254|gb|EDR67000.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699339|gb|ACC89968.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis PB1/+] gi|229681538|gb|EEO77632.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|229688383|gb|EEO80454.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229694637|gb|EEO84684.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701339|gb|EEO89367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A] gi|262362509|gb|ACY59230.1| ATP-dependent RNA helicase [Yersinia pestis D106004] gi|262366486|gb|ACY63043.1| ATP-dependent RNA helicase [Yersinia pestis D182038] gi|270338302|gb|EFA49079.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27] gi|294354958|gb|ADE65299.1| ATP-dependent RNA helicase [Yersinia pestis Z176003] gi|320016083|gb|ADV99654.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 441 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 162/448 (36%), Positives = 239/448 (53%), Gaps = 27/448 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L +++ A+ D GY +PT IQ IP + DV G A TGTGKTA+F+LP L Sbjct: 5 NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + PR LIL PTRELA QVAD + K L +A + GG+ + + Sbjct: 65 HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 DV++ T GR+L + +E L++DEADRMLDMGF I+ I++ + +QT Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ E +++ +E L P +E + + I+ + K ALL LL Sbjct: 185 LLFSATLEGEAIREFAERILNEPVELEADPSRRERKKIQQWYYRA-DDIKHKTALLCHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K+ IIF ++ V L L + G + + G + Q R + + +G + ++ Sbjct: 244 KQPDVSKS-IIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDI D+ HVFNFD+P A+ Y+HRIGRTGRAGR G A +LV D HI Sbjct: 303 VATDIASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLVEAHD--HI-- 358 Query: 360 IEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 L G + LN PL+ I + R + P + KK + +K Sbjct: 359 -----------LLGKIGRYLNEPLKPRVI---DELRPTSKAPSEKATGKPSKKVLAKRKE 404 Query: 419 HIPLKESEKISKLQQDIQENDADSLGFR 446 KES K K++ ++ DA ++G R Sbjct: 405 Q---KESSK-EKVKVKVRHRDAKNVGKR 428 >gi|325000518|ref|ZP_08121630.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1] Length = 547 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 151/418 (36%), Positives = 231/418 (55%), Gaps = 30/418 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA+LG+ P++V A+ + V+ IQ T+PL L DV G A+TGTGKT F +PML Sbjct: 65 FAELGVRPEIVSALAENDIVRTFAIQELTLPLALDGEDVIGQARTGTGKTLGFGVPMLQR 124 Query: 61 --------TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109 +G A R +P+ L++ PTREL QVA + GKN + V + GG Sbjct: 125 ITPPGEQPAATAEGEAADRTKDVPQALVVVPTRELCVQVARDIAAAGKNLGVRVVAIYGG 184 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 +E Q + L +G DV++ TPGR+LD + L++ ++ LV+DEAD MLD+GF+P ++ Sbjct: 185 RAYEPQLEALRKGVDVIVGTPGRLLDLAEQRHLVLGRVKALVLDEADEMLDLGFLPDVER 244 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQ 227 I ++P R T+LFSATM + ++S FL P R E S E + +A Sbjct: 245 ILRMLPEQRHTMLFSATMPGPIVQLSRAFLTRPTHIRAEEADQGSIHERTKQLVYRAHAM 304 Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 K L+ ++LQ++D + +IF K+ + L ++GF+ A+HG++ Q +R + Sbjct: 305 --DKVELVTRVLQAKDRGLS-MIFTRTKRTAQRVADDLAERGFAAAAVHGDLGQGAREQA 361 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L F+ + ++VA+D+AARG+D+ V HV N+ P ++ Y+HRIGRTGRAGR G A T Sbjct: 362 LRAFRAEKVDVLVATDVAARGIDVTGVTHVVNYQCPEDSKTYVHRIGRTGRAGREGVAVT 421 Query: 348 LVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 LV ++I KLI + ++ + P+E + H + IP STG Sbjct: 422 LVDWDEIPRW----KLISEDLNL------GMPEPVETYSTSDHLFTDLD--IPTDSTG 467 >gi|281351661|gb|EFB27245.1| hypothetical protein PANDA_013938 [Ailuropoda melanoleuca] Length = 940 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 260 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 319 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 320 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 375 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 376 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 435 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 436 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 495 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 496 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 554 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 555 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 611 >gi|194216767|ref|XP_001501051.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Equus caballus] Length = 935 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|114669826|ref|XP_001147663.1| PREDICTED: DEAD box polypeptide 42 protein isoform 5 [Pan troglodytes] gi|114669828|ref|XP_001147738.1| PREDICTED: DEAD box polypeptide 42 protein isoform 6 [Pan troglodytes] gi|114669830|ref|XP_001147818.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 7 [Pan troglodytes] gi|114669832|ref|XP_001147880.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 8 [Pan troglodytes] Length = 938 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|110638284|ref|YP_678493.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406] gi|110280965|gb|ABG59151.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406] Length = 388 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 142/371 (38%), Positives = 219/371 (59%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA LGLSP ++ A+ Y P PIQ + IP +L+ D+ GIAQTG+GKTASFVLP+L Sbjct: 9 MSFATLGLSPAILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKTASFVLPIL 68 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117 +L+ K + R L+L PTRELA QV F+ + + + GG+ Q Sbjct: 69 QMLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGVSINPQMI 128 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L+ G ++LI TPGR+LD + + ++++E+LV+DEAD+ML++GF + NI L+P Sbjct: 129 QLQ-GVEILIATPGRLLDLVDSKAVYLSDVEVLVLDEADKMLNLGFKEEMANIFKLLPQK 187 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT+ ++ ++E L +P +IE+ + I+ +A + ++K LL+ Sbjct: 188 RQNLLFSATLGKDVDTITEFLLHDPVKIEIIAEEQNIDLIQQ--IAYAVEDARKGPLLRY 245 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ Q M +IF + + L+ A+H Q +R + L FK G I Sbjct: 246 LIKEQK-MNQVLIFTSSVHRADAVVEKLKANNILAAALHSKKSQGARTEALKQFKAGNIH 304 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+DL +RG+DIP + V N+++P ++YIHRIGRTGRA G A L+++E+ H Sbjct: 305 VLVATDLMSRGIDIPFLPFVINYELPRSPKDYIHRIGRTGRAEASGVAINLISEEETHHF 364 Query: 358 DAIEKLIEKKV 368 I+K + KKV Sbjct: 365 SVIQKKMGKKV 375 >gi|315040958|ref|XP_003169856.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893] gi|311345818|gb|EFR05021.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893] Length = 558 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 214/373 (57%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPTPIQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 143 FDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 202 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 203 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 258 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 259 RDLTRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 318 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT ++++++ +FLQ+ ++ + + +A V +++ K+ +++ Sbjct: 319 DRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIK 378 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + K+ + IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 379 HLERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 438 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N D PN +E+Y+HRIGRTGRAG +G A TL E+ K Sbjct: 439 SPIMVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAK 498 Query: 356 HI-DAIEKLIEKK 367 D ++ L E K Sbjct: 499 QARDLVKILTESK 511 >gi|296201782|ref|XP_002748184.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Callithrix jacchus] Length = 934 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|258620667|ref|ZP_05715704.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] gi|258623759|ref|ZP_05718717.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] gi|262172593|ref|ZP_06040271.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451] gi|258583956|gb|EEW08747.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] gi|258587182|gb|EEW11894.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] gi|261893669|gb|EEY39655.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451] Length = 436 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 219/383 (57%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD GL P+V+ + G++ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADFGLHPQVIDGLEKKGFIYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + T +GRA + PR +I+ PTRELA Q+ ++ E L AL GG ++ Q Sbjct: 71 LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLA 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL+ G D+LI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNDHKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L V + G++ Q+ R +IL F +G Sbjct: 248 QTLVE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E Sbjct: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ AIE I+ + + D S+L Sbjct: 367 NLPAIESYIDHAIPTSDYDPSAL 389 >gi|73965187|ref|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1 [Canis familiaris] Length = 696 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii] gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii] Length = 653 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/393 (36%), Positives = 222/393 (56%), Gaps = 15/393 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGL ++ A+ GY PTPIQ + +P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 185 FKELGLDSLLMGAITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 244 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P +I PTRELA Q+ + K+ K Y + V+ + GG+ Q K+L+ Sbjct: 245 IMDQEELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELK 304 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G ++++ TPGR++D L M LV+DEADRM D+GF P I++I + RQT Sbjct: 305 AGCEIVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 364 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ ++ L P R+ E + K +L +L Q Sbjct: 365 LLFSATMPRRVETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADKLQWMLSKLPQ 424 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F + K V L L+ GF V A+HG+ DQ SR+ +L FK G ++V Sbjct: 425 MVDA-GDVLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLV 483 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHIDA 359 A+D+AARGLDI + V N+D + ++HR+GRTGRAG + G A+TLVA+++ + Sbjct: 484 ATDVAARGLDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVAQKEARFAG- 542 Query: 360 IEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHN 391 D +NG +++ N P E +D+A + Sbjct: 543 ---------DLVNGFVAAGQNVPSELMDLAMKD 566 >gi|291537686|emb|CBL10798.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis M50/1] Length = 530 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 217/368 (58%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P+V+ A+ + G+ + TPIQ + IP+V+ DV G AQTGTGKTASF +P+L Sbjct: 6 FDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ + ++ +IL PTRELA QVAD K K + + + + GG Q K L+ Sbjct: 66 VDPNNKKTQV---IILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKALKG 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 GA ++I TPGR++DH R + + +V+DEAD ML+MGF I+ I +P RQT Sbjct: 123 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM + +++ + + I+V T IE + + K +L +LL Sbjct: 183 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDV--KRKDKIEVLTRLLD 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K ++FCN K+ V L L+ +G+ +HG++ Q R +++ F+ G ++++ Sbjct: 241 YYNP-KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILI 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G+AFT V +++ + I Sbjct: 300 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 359 Query: 361 EKLIEKKV 368 + + K+ Sbjct: 360 MRYCKTKI 367 >gi|207742162|ref|YP_002258554.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] gi|206593550|emb|CAQ60477.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] Length = 471 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 149/392 (38%), Positives = 222/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P V+ + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 16 FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAQ 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ R V+ ++L PTRELA QVA + + N+ V L GG P Q LE Sbjct: 76 LDARRFDVQ---AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 133 GAHVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTL 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + K+S L+NPK +++ ++ + + T + LL + + Sbjct: 193 LFSATYPDGIAKLSRQILRNPKEVKLEERHDDSKIRQRFYEVTDDKRLHAVGLLLKHYRP 252 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K+ +L L QGF A+HG ++QR R ++L F + ++VA Sbjct: 253 VSTLA----FCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA + G A +L + +++ + IE Sbjct: 309 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGNIE 368 Query: 362 KLIEKKVDWLN------GDLSSLNPPLEKIDI 387 +++ ++V+W G+ + L PP+E + I Sbjct: 369 EVLGREVEWHRLDEIDAGNDAPLLPPMETLQI 400 >gi|150003861|ref|YP_001298605.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482] gi|254880913|ref|ZP_05253623.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA] gi|294775017|ref|ZP_06740546.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510] gi|319639922|ref|ZP_07994650.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A] gi|149932285|gb|ABR38983.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482] gi|254833706|gb|EET14015.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA] gi|294451061|gb|EFG19532.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510] gi|317388461|gb|EFV69312.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A] Length = 624 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 226/377 (59%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F +LG+SP+++ A+ + GY P P+Q + IP +L +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLI- 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +K + R P+ LIL PTREL Q+A + Y K + L + + GG E+Q + L+ Sbjct: 63 --QKVDVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRMLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D R + I +V+DEAD ML+MGF I I VP R T Sbjct: 121 TGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM+ E+ ++++ +L + K I + T + ++ + H +A+ K A L+++ Sbjct: 181 LMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAK--DKYAALKRIAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC +K + L + G++ ++HG + Q R ++ F++ +QL+V Sbjct: 239 YYPQIY-GIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 E++I KK ++ G++ S Sbjct: 358 ERIINKK--FIMGEMPS 372 >gi|182682666|ref|YP_001830826.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M23] gi|182632776|gb|ACB93552.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23] gi|307578947|gb|ADN62916.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa subsp. fastidiosa GB514] Length = 544 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 224/375 (59%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F+ L P ++ + AG+ TPIQ T+P+ L D+ G AQTGTGKT +F++ ++ Sbjct: 10 LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 69 Query: 61 TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L V PR LIL PTRELA Q+ ++ K+G N L AL+ GG+ ++ Q Sbjct: 70 NRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQR 129 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +GADV+I TPGR++D+ + +++ + EI V+DEADRM D+GFI I+ I +P Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +RQTLLFSAT++ + +++ ++ P+++ T S T + + +K Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIY--FPAEEEKIP 247 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + M+ ++F N K V + +L++ G+ V + G++ QR R +L+ F++ Sbjct: 248 LLLGLLSRNEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 306 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 307 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 366 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 367 AMSLPDIEAYIEQKI 381 >gi|288935786|ref|YP_003439845.1| DEAD/DEAH box helicase [Klebsiella variicola At-22] gi|290509812|ref|ZP_06549183.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55] gi|288890495|gb|ADC58813.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22] gi|289779206|gb|EFD87203.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55] Length = 457 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 219/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F+ L + P A L + GY+ TP+Q +P +L DV A+TG+GKTA+F L +L Sbjct: 4 FSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R + +L+L PTRELA QVA + + N+ + +L GG PF AQ L+ Sbjct: 64 HIDPARFETQ---SLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH +G + ++ ++ LV+DEADRMLDMGF I + P RQT Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + +S +NP+ IE++T + IE F K ALLQ+LL Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEIDTVDAL-PAIEQQFFEV--SRHGKIALLQRLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 SQ + ++FCN K++ +C +L G S ++HG+++QR R + L F G+++++V Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382 +++ ++WL + PL Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378 >gi|109116835|ref|XP_001116381.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 5 [Macaca mulatta] gi|109116837|ref|XP_001116390.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 6 [Macaca mulatta] Length = 937 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|328875962|gb|EGG24326.1| putative RNA helicase [Dictyostelium fasciculatum] Length = 806 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 146/395 (36%), Positives = 219/395 (55%), Gaps = 20/395 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +G ++ ++ GY PT IQ + +P+ L D+ IA+TG+GKTASF+ P + Sbjct: 333 FGHIGFDDIMIQSIQKQGYETPTSIQKQAVPIALSGRDLIAIAKTGSGKTASFIWPAIVH 392 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LEKG P + + PTRELA Q+ +K+ K Y + ++ GG+ Q Sbjct: 393 IMNQPYLEKGDG----PIAVFVSPTRELAHQIYMETQKFAKPYKIKTTVVYGGVTKLLQC 448 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 ++L+ G ++L+ TPGRI+D MN LV+DEADRM DMGF P +Q+I + Sbjct: 449 RELKAGCEILVGTPGRIIDMIKLKATKMNRCTFLVLDEADRMFDMGFEPQVQSIIGQIRP 508 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT + +++++ N L +P RI + S + I+ FV +K L Sbjct: 509 DRQTLLFSATFPNAIEQLARNILTDPIRISIGNSGSANQDIKQ-FVKVLPSDGEKWGWLT 567 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L T N +IF + K V L +L K GF IHG+ DQ+ R +I+S FK GT+ Sbjct: 568 ETLPLMLTEGNVVIFVSTKVAVEQLSTNLLKFGFLADGIHGDKDQQERTQIISRFKSGTV 627 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDI + +V NFDV +++ HR+GRTGRAG G A TL+ +D Sbjct: 628 PILVATDVAARGLDISLIKNVVNFDVSRDIDSHTHRVGRTGRAGTQGTAHTLITPKDTHF 687 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391 + + +E+ ++ N P E I +A +N Sbjct: 688 SADLVRHLEE---------ANQNVPPELITVAMNN 713 >gi|311266965|ref|XP_003131337.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42-like [Sus scrofa] Length = 941 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|133777033|gb|AAH43036.4| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus] Length = 810 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 136 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 195 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 196 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 251 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 252 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 311 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 312 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 371 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L +L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 372 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 430 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 431 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 487 >gi|126340121|ref|XP_001371236.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 542 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 218/370 (58%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C D G+ PT IQI+ IP+ L D+ G+A+TG+GKT +F LP+L Sbjct: 110 FKDLGVT-DVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGSGKTGAFALPILN 168 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L R L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + Sbjct: 169 ALLDTPQRFF---ALVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAK 225 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V+I TPGR++DH K + ++ LV+DEADR+L+M F + I L+P R+T Sbjct: 226 KPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRKT 285 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE--HCFVATYAQYSKKCALLQQL 238 LFSATMT ++QK+ L+NP + V++ T E ++ + F+ + + S +L +L Sbjct: 286 FLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVYILNEL 345 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + ++FC+ N L GF+ +HG + Q R+ L+ FK + Sbjct: 346 AGN-----SFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSI 400 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GK+ T V + D++ Sbjct: 401 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQ 460 Query: 359 AIEKLIEKKV 368 IE LI KK+ Sbjct: 461 RIEHLIGKKL 470 >gi|224134991|ref|XP_002327540.1| predicted protein [Populus trichocarpa] gi|222836094|gb|EEE74515.1| predicted protein [Populus trichocarpa] Length = 497 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 143/425 (33%), Positives = 226/425 (53%), Gaps = 31/425 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D+G V+ + AG+ +PTPIQ + P+ L+ D+ GIA+TG+GKT +++LP + Sbjct: 93 FHDVGFPDYVLQEISKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIIH 152 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L G P L+L PTRELA Q+ K+G + + + GG+P Q Sbjct: 153 VNAQPFLAPGDG----PIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQV 208 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L++G +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 209 RDLQKGVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 268 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHC-FVATYAQYSKKCA 233 RQTL +SAT E+++++ L NP ++ + +P A +H V+ +Y+K Sbjct: 269 DRQTLYWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQHVDIVSENQKYNKLVK 328 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ ++ + IF + KK + L G+ +IHG+ Q R +LS FK Sbjct: 329 LLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 384 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +M A+D+AARGLD+ DV +V N+D P E+Y+HRIGRTGRAG G A+T + Sbjct: 385 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAGN 444 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 + + ++E+ ++ +L+++ AR P+ GF R + Y Sbjct: 445 ARFAKELVTILEEAGQKVSPELTAM--------------ARGAPPLLSGHGGFRDRGRGY 490 Query: 414 SSQKS 418 S +S Sbjct: 491 SGGRS 495 >gi|160884579|ref|ZP_02065582.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483] gi|237718558|ref|ZP_04549039.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4] gi|260174903|ref|ZP_05761315.1| ATP-dependent RNA helicase [Bacteroides sp. D2] gi|299145716|ref|ZP_07038784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_23] gi|315923146|ref|ZP_07919386.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156110318|gb|EDO12063.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483] gi|229452018|gb|EEO57809.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4] gi|298516207|gb|EFI40088.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_23] gi|313697021|gb|EFS33856.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 422 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/371 (36%), Positives = 219/371 (59%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ + IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G+ +I+ PTRELA Q+ E + ++ + GG I FE Q K Sbjct: 61 NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ L NP I++ + I+ +V Q K +++ Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPSEIKLAVSKPAEKIIQAAYVCYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + + I+F + K V + +L+ +V +H +++Q R ++ FK G I Sbjct: 238 LFMDE-VPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V NFDVP+ +E+Y+HRIGRT RA G A T +++++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356 Query: 358 DAIEKLIEKKV 368 +IE +EK++ Sbjct: 357 KSIENFLEKEI 367 >gi|161528690|ref|YP_001582516.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160339991|gb|ABX13078.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus SCM1] Length = 440 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/374 (36%), Positives = 212/374 (56%), Gaps = 8/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL ++ + D G+ + PIQ IP++L DV G A TG+GKTA+F L ML Sbjct: 4 FQELGLKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSMLQE 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + LI+ PTRELA Q+ D +K+GK + VA + GG Q LERG Sbjct: 64 IQPKNG----IQGLIMAPTRELAMQITDEIKKFGKYTGIKVATVYGGQGMGLQLDALERG 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++++ TPGR++DH RG + + ++ +V+DEAD MLDMGFI I I L P R L Sbjct: 120 VEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVMSL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM E+ ++SE +L NPK+ ++ + E I+ ++ + K L ++ Sbjct: 180 FSATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVI--KDRDKFKYLIDFIKP- 236 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 T I+FC+ K ++ L ++ F AI G++ Q R + + F+ G ++VA+ Sbjct: 237 -TKGQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVAT 295 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RG+D+P V V N+DVPN+ Y HRIGRT RAG GKA T V+ + + I++ Sbjct: 296 DVASRGIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNLIKR 355 Query: 363 LIEKKVDWLNGDLS 376 I+ + LN ++ Sbjct: 356 QIKVPIKDLNEEMG 369 >gi|327403398|ref|YP_004344236.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318906|gb|AEA43398.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM 16823] Length = 443 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 142/396 (35%), Positives = 221/396 (55%), Gaps = 8/396 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL + ++ A+ + GY PT IQ +++ DV G+AQTGTGKT +++LP L Sbjct: 1 MTFHDLNIKKPILTALDELGYTTPTTIQSAGFSVMMSGKDVIGLAQTGTGKTLAYLLPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + + P+ LI+ PTREL QV EK + NL V + GG Q + Sbjct: 61 SLWKFSKEP--HPQILIIVPTRELVVQVVREVEKLTPHMNLAVGGVYGGANINTQASMVL 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G DVL+ TPGRI D G L + + + +VIDE D L +GF P + I L+P RQ Sbjct: 119 QGLDVLVGTPGRIFDLTANGSLQLKHAKKVVIDEVDETLSLGFRPQLMRIFDLLPEKRQN 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+++E++ F +NP R+E + E I+ +A ++ K LL+ +L+ Sbjct: 179 LLFSATLSEEVEGFLGVFFENPIRVEAARVGTPLEKIKQEAIAV-PNFTSKVNLLKHMLE 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + M ++F + + L LE G + IH + Q R +++F+ G +++ Sbjct: 238 TNQDMSRVLVFVSSRVFADKLYEELEPVFGVELGVIHSSKAQNFRFNAVNHFQNGIYRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+DL ARG+D+ DV HVFNFD+P+ ENYIHRIGRTGR + G A + + + D + Sbjct: 298 IATDLIARGIDVTDVTHVFNFDIPDNQENYIHRIGRTGRQDKEGHAISFLTERDHEQFVK 357 Query: 360 IEKLIEKKVDWL----NGDLSSLNPPLEKIDIAQHN 391 IE+ ++KKV+ +LS++ EKI ++ N Sbjct: 358 IEEFMDKKVEIQAFPEEAELSTVILEFEKIQVSMKN 393 >gi|71280589|ref|YP_270076.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H] gi|71146329|gb|AAZ26802.1| ATP-dependent RNA helicase, DEAD box family [Colwellia psychrerythraea 34H] Length = 432 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 211/367 (57%), Gaps = 15/367 (4%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 +LGL ++ + + Y +PTPIQ + IP V D+ A TG+GKTA+F LPML L Sbjct: 12 ELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLR 71 Query: 65 KG------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQN 116 + ++ L+L PTRELA QVAD+ + Y ++N + L GG+ Q Sbjct: 72 EDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQM 131 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + + +L P Sbjct: 132 LALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPK 191 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALL 235 +QTLLFSAT +++ +++ L NP IE+ S+ A T ++ F + K A+L Sbjct: 192 KKQTLLFSATFPEQVTTLTQELLNNP--IEIQLQSADASTLVQRVFTVNKGE---KTAVL 246 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+Q Q+ + +IF N K + +L L K+G + HG+ Q R ++L FK G Sbjct: 247 AHLIQ-QEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGD 305 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I++++A+D+AARGLDI + V NF++P +Y+HRIGR+GRAG G A +L+ ED Sbjct: 306 IEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYH 365 Query: 356 HIDAIEK 362 H IEK Sbjct: 366 HFSVIEK 372 >gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f. nagariensis] gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f. nagariensis] Length = 574 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 220/387 (56%), Gaps = 27/387 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + GL ++ A+ GY KP+PIQ+ IPL LQ+ DV GIA+TG+GKTA+FVLPML+ Sbjct: 157 WEESGLPSLLIKAIDRVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 216 Query: 63 LEKG-----RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + P ++L PTRELA Q+ + K N +A ++GG E Q Sbjct: 217 IMRQPPMTEENEADGPYAVVLAPTRELAQQIEEETHKLAYYTNYRIASVVGGQSIEEQGA 276 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 KL +G +++I TPGR+LD +R ++N +V+DEADRM+D+GF P + + +P + Sbjct: 277 KLRKGCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPSS 336 Query: 178 -----------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EH 219 R T +FSATM ++++++ +L+ P + + + + + + Sbjct: 337 FLKPDEDGAVLEANRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGKVTDNVTQR 396 Query: 220 CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNI 279 FV + ++K +L+Q ++S D K I+F N ++ N+ LE+ G+ +HG Sbjct: 397 VFVV---KENEKPRVLEQEMESVDE-KRVIVFVNTQRQCDNVHRHLEELGYRCTILHGGK 452 Query: 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339 Q R + F++GT ++A+D+A RG+D+PDV V N+D+PN ENY HRIGRTGRA Sbjct: 453 TQDQREAGIKGFRDGTYNCLIATDVAGRGIDVPDVALVINYDMPNNIENYTHRIGRTGRA 512 Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEK 366 G+ G A T + D ++KL+E+ Sbjct: 513 GKKGVAVTFLTLGDTGVFYDLKKLLEE 539 >gi|91793927|ref|YP_563578.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91715929|gb|ABE55855.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 422 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/354 (38%), Positives = 205/354 (57%), Gaps = 8/354 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS ++ AV + GY TP+Q IP+ L DV A+TGTGKTA+F LP+L Sbjct: 1 MPFNALGLSSQLQDAVKECGYDATTPVQQAVIPVALLGQDVLASAETGTGKTAAFALPIL 60 Query: 61 TILEKGRARVRMP----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L + + P R L++ PTRELA Q+ NF Y + L + GG Q Sbjct: 61 MNLSQIDTQTLTPEQRLRALVMTPTRELAIQIEQNFLSYSRYLELNSLAVYGGASINPQR 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L +G DVL+ TPGR+ D + +L ++++ LVIDEADRMLD+GF+ I+ + LV Sbjct: 121 KALAQGVDVLVATPGRLFDIIGQHELDLSHVTHLVIDEADRMLDLGFVKDIEKVQRLVAR 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT++FSAT +DE+Q +++ L P + + S+TA T+ +K LL Sbjct: 181 QRQTMMFSATFSDEVQVLAQKMLNQPAIFHLAS-STTASTVSQEVY--LVDKRRKAELLS 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ ++ + ++F + K+ +L L G HG+ Q +R K L FK+G + Sbjct: 238 ELI-GRNNWQQVMVFTSTKETAEHLLSELTLDGLKAAVFHGDKSQGARNKALEEFKQGQL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 ++++A+DLAARGLDI + V NF++P E+Y+HR+GRTGRAG G A + V+ Sbjct: 297 RILIATDLAARGLDIQALPLVINFELPPEPEDYVHRVGRTGRAGMAGHAISFVS 350 >gi|26340024|dbj|BAC33675.1| unnamed protein product [Mus musculus] Length = 810 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 136 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 195 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 196 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 251 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 252 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 311 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 312 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 371 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L +L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 372 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 430 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 431 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 487 >gi|327302680|ref|XP_003236032.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892] gi|326461374|gb|EGD86827.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892] Length = 538 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 214/373 (57%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPTPIQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 124 FDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 183 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 184 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 239 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 240 RDLTRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 299 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT ++++++ +FLQ+ ++ + + +A V +++ K+ +++ Sbjct: 300 DRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIK 359 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + K+ + IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 360 HLERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 419 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N D PN +E+Y+HRIGRTGRAG +G A TL E+ K Sbjct: 420 SPIMVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAK 479 Query: 356 HI-DAIEKLIEKK 367 D ++ L E K Sbjct: 480 QARDLVKILTESK 492 >gi|117620754|ref|YP_854622.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|189040024|sp|A0KEG9|RHLB_AERHH RecName: Full=ATP-dependent RNA helicase rhlB gi|117562161|gb|ABK39109.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 429 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/374 (38%), Positives = 227/374 (60%), Gaps = 13/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA +GL P+V+ + G+ TPIQ ++PL+++ HD+ G AQTGTGKT +F+ Sbjct: 11 FAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAFLAATFNY 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K R + PR +I+ PTRELA Q+ ++ E + L + L GG ++ Q Sbjct: 71 LLTHPLTKPRL-INQPRAIIMAPTRELAVQIYNDAESMSASTGLKLGLAYGGEGYDKQLA 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 LE+G D+LI T GRI+D+F + ++NI+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPA 189 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 R ++LFSAT++ +Q+++ + +P+ +++ T I E F Y K L Sbjct: 190 TERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGVRIKEELF---YPSNEDKMLL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L++ + K I+F N K ++ LE G V + G++ Q+ RMKIL +F +G Sbjct: 247 LLSLMEEEWPEK-AIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 T+ ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +L ++ Sbjct: 306 TVDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYA 365 Query: 355 KHIDAIEKLIEKKV 368 ++ AIE+ I + Sbjct: 366 FNLPAIEEYIHHPI 379 >gi|85859652|ref|YP_461854.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB] gi|85722743|gb|ABC77686.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB] Length = 413 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 131/372 (35%), Positives = 220/372 (59%), Gaps = 6/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + +S + + G+ +PT IQ K+IP +++ DV IAQTGTGKTA+F +P++ Sbjct: 1 MKFENYTISEAIKQNLAQLGFRRPTDIQFKSIPSIMKGEDVLAIAQTGTGKTAAFAIPLI 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + EK RV + ++L PTRELA Q+ + F K+ + LIGG+ + Q +K Sbjct: 61 DRIHREKSSKRVFGIKCIVLVPTRELAMQIGEVFAGLAKHTRVKTFPLIGGVEQDEQIRK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+LI TPGR+ D ++G + ++ IE LV+DEAD MLD+GFI I+ + ++ Sbjct: 121 LQDGIDILIATPGRMFDLIHQGHIRLDRIETLVLDEADHMLDLGFIEDIKFVKRMLHKKH 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTL FSAT+ E++K++ + ++ RI+++ + + H + + + K L++ Sbjct: 181 QTLFFSATINPEIKKLAFSQVKGTAIRIQISPEDPVSANVTHAVM--FVEMDDKRFFLER 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ K I+F + + ++E+ G IHG DQ R ++ FKEG Sbjct: 239 FLKENQESKV-IVFVRTRIRAERVARAMERVGLHSLTIHGEKDQAERTSVMRKFKEGECN 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L++A+D++ARG+DIPDV +V N+D+P +AENY+HR+GRTGR G A + + ++ + Sbjct: 298 LLIATDVSARGIDIPDVNYVINYDLPEKAENYVHRVGRTGRGDNKGIALSFCSSDEKMRL 357 Query: 358 DAIEKLIEKKVD 369 I++ + K+++ Sbjct: 358 QEIQQFLNKEIE 369 >gi|146329072|ref|YP_001209762.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A] gi|146232542|gb|ABQ13520.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A] Length = 432 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 216/371 (58%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D + ++ A+ D + K TPIQ +T+PL L +DV GIAQTGTGKTA+F+L ++ Sbjct: 11 FTDFPIHSALLEALEDIHFTKTTPIQAQTLPLTLAGYDVMGIAQTGTGKTAAFLLSLMHY 70 Query: 63 LEKG--RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + P ++L PTRELA Q+ + G L + GG E Q K + Sbjct: 71 LMTNPVHPKAKGPWAIVLAPTRELAIQIKKEMDLLGAYTGLVSLAIYGGTSIEHQKKLFQ 130 Query: 121 R-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FT 177 DV+I TPGRI+D F + + NIE+ V+DEADRM D+GFI ++ + +P + Sbjct: 131 ACNVDVIIGTPGRIIDLFKQKVFRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAYE 190 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 R LLFSATM ++Q+++ PK + + + +TA I H T A++ K LL Sbjct: 191 RLNLLFSATMPQKVQELAYEHFNAPKVVAIESQQTTANNITHYLYHT-AKHEKTPLLLG- 248 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L +++ + +IF N K ++ L L G+ A+ G++ Q+ R +I+ +F+EGT+ Sbjct: 249 -LFARERPERSMIFLNTKHDLERLSLVLTANGYHNAALSGDVAQKKREQIIRDFQEGTVN 307 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+ I + HVFN+D+P AE+Y+HRIGRT RAG G A + +E + + Sbjct: 308 IVVATDVAARGIHIDGITHVFNYDLPQIAEDYVHRIGRTARAGASGTAISFACEEYVYSL 367 Query: 358 DAIEKLIEKKV 368 IE + +K+ Sbjct: 368 PEIEHFLGEKI 378 >gi|304311852|ref|YP_003811450.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1] gi|301797585|emb|CBL45806.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1] Length = 458 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 214/370 (57%), Gaps = 8/370 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DFA L L P +V + GY + TPIQ + +P +L DV ++TG+GKTA+F + +LT Sbjct: 5 DFASLLLPPHLVENLRGLGYSQMTPIQAQALPPILDGADVIAQSKTGSGKTAAFGIGVLT 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L R + L+L PTRELA QVA + ++ N+ + L GG Q LE Sbjct: 65 SLNP---RFFGTQALVLCPTRELADQVAKELRRLARSLQNIKILTLCGGTAIGPQFASLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+ H ++G L + ++ LV+DEADRMLDMGF I I +P RQT Sbjct: 122 HGAHIIVGTPGRVTKHLDKGSLDLQGLKTLVLDEADRMLDMGFYDQIAEIARFIPKRRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT T ++++S NF NP I V + + +E ++ + + Q + + L + + Sbjct: 182 LLFSATYTPAIRELSRNFQSNPVEITVESVHADSEIEQYFYEVDHKQRRRALSALLKNFK 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + ++FCN K+ + +L QGF +HG+++QR R +L F + +V Sbjct: 242 PE----SAVLFCNTKQLCDEVADALNAQGFYAQTLHGDMEQRDRDLVLLKFSNRSCPYLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI D+ V N DV + +IHRIGRTGRAG+ G A +L + +++ +AI Sbjct: 298 ATDVAARGLDIKDLAAVVNVDVAFDPDVHIHRIGRTGRAGQKGLALSLCSPAEVQRANAI 357 Query: 361 EKLIEKKVDW 370 E L+ + + W Sbjct: 358 ETLLGRPLHW 367 >gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1] gi|143462228|sp|A1CR32|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3 gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1] Length = 473 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/372 (37%), Positives = 217/372 (58%), Gaps = 14/372 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ ++ A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 55 FKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPIL-- 112 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P++ L+L PTRELA Q++ +FE G N+ A+++GG+ +Q+ L Sbjct: 113 ----QALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIAL 168 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + ++ LV+DEADR+LDM F P + I ++P R Sbjct: 169 GKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKILPRER 228 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237 +T LFSATM+ +++ + L NP R+ V++ T T+ + + + K L Sbjct: 229 RTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSY--RFIPHKHKDIYLVY 286 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ ++ IIF + L GF +HG + Q SR+ L F+ + Sbjct: 287 LL-NEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRD 345 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V NFD+P ++ Y+HR+GRT RAG+ G A + V + D++ Sbjct: 346 ILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIW 405 Query: 358 DAIEKLIEKKVD 369 IE + KK+D Sbjct: 406 LRIEGALGKKLD 417 >gi|153940796|ref|YP_001391035.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str. Langeland] gi|152936692|gb|ABS42190.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str. Langeland] gi|295319091|gb|ADF99468.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str. 230613] Length = 481 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 229/386 (59%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + LS +++ ++ GY P+ +Q + IPL+L+ D+ ++TG+GKTA+F +P Sbjct: 4 LTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK + P+ L+L PTRELA Q+ + L + G P Q ++L+ Sbjct: 62 -VCEKLELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR LDH R L + I+ V+DEAD ML+MGFI ++ + +P R T Sbjct: 121 QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ ++++ + + ++ NP+ I +N + T +TI C+ + K +LLQ+++ Sbjct: 181 MLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYE--VEDKDKFSLLQKII- 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + N IIFCN ++ V + +++K+G + +HG ++Q+ R++ + FKEG Q +V Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ I ++ HV N+++P E+Y+HRIGRTGRAG+ G A T + ++ + I Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLRDI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386 E IEK++ P LE++D Sbjct: 358 EDYIEKEIP------KRKEPSLEEVD 377 >gi|329769092|ref|ZP_08260513.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325] gi|328839438|gb|EGF89015.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325] Length = 486 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/359 (38%), Positives = 217/359 (60%), Gaps = 7/359 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+S +VV ++ + PT IQ +TIP V D+ AQTG+GKT +F +P++ I Sbjct: 4 FEELGVSREVVESLSKMNFQSPTGIQTETIPYVFSGIDILAQAQTGSGKTGAFGIPIVDI 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ R ++L+L PTRELA QV + + L V+++ GG E Q + L++ Sbjct: 64 VK----RSEDLQSLVLAPTRELAQQVGEQLRLMARAKGLKVSIIFGGTSIERQIQDLKKR 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH NR L ++ + LV+DEAD ML+MGFI ++ I S + QTLL Sbjct: 120 PQIVVGTPGRVIDHINRRTLKLDKLTHLVLDEADEMLNMGFIEDVRFILSKITSNHQTLL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++S++F+++ K I+ + I+ AT A+ ++K L L Q Sbjct: 180 FSATMPKTIMELSKDFMKDYKLIKTMSDEDLNPDIKEY--ATIARENEKLETLVGFLDVQ 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G+ +HG+I Q R++IL FK ++Q++VA+ Sbjct: 238 NP-NLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 D+AARG+DI DV HV+NFD+P E+Y HRIGRTGRAG+ G A T + ++ ++ IE Sbjct: 297 DVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEMPYLKDIE 355 >gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC 51172] gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC 51172] Length = 550 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/365 (39%), Positives = 219/365 (60%), Gaps = 12/365 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F +L +S + + A+ D G+ P+PIQ +TIP +L DV G AQTGTGKTA+F +P Sbjct: 15 VEFKELYISEETLRAIADMGFKSPSPIQEETIPPLLDGKDVIGQAQTGTGKTAAFAIP-- 72 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFEAQNK 117 I+EK A + + L+L PTREL QVA N KY + + + + GG Q K Sbjct: 73 -IIEKIEAN-GLTQALVLCPTRELCIQVAKEIGNLAKY--HTGIKILSVYGGTQIVKQIK 128 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G ++++ TPGR++D R L ++N++I+V+DEAD M DMGF ++ I Sbjct: 129 ALKKGVEIVVGTPGRLMDLMRRRVLKLDNLKIVVLDEADEMFDMGFRDDMKFILDATNDD 188 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT FSATM E+ + S+ + +NP I++ T I+ F+ + + K L + Sbjct: 189 RQTCFFSATMGKEISEFSKIYQKNPVTIKIKAKELTVNKIDQHFIKL--KEADKEETLTR 246 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ + IIFCN K+ V L SL K+ + V +HG++ Q R ++ F+ TI Sbjct: 247 LLEINKP-RLAIIFCNTKRKVDKLVESLSKKSYLVDGLHGDLKQTQRDIVMKKFRNNTID 305 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLD+ DV V N+D+P E Y+HRIGRT RAGR G +++L++ D + + Sbjct: 306 ILVATDVAARGLDVDDVDMVINYDLPQLDEYYVHRIGRTARAGRSGLSYSLISGRDNERL 365 Query: 358 DAIEK 362 AIEK Sbjct: 366 KAIEK 370 >gi|213410545|ref|XP_002176042.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus yFS275] gi|212004089|gb|EEB09749.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus yFS275] Length = 461 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 220/371 (59%), Gaps = 13/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ ++ A + P+ IQ + IP L++ D+ G+AQTG+GKTA+F +P++ Sbjct: 44 FKELGVIDEICEACEKLNFKAPSAIQKEAIPAALKQQDIIGLAQTGSGKTAAFAIPVIQA 103 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + ++L PTRELA Q+++ FE G + +++GG+ Q + + Sbjct: 104 LWENPCPFF---GVVLAPTRELAYQISEQFEALGGAMGVKSVVIVGGMDMVTQAVAISKK 160 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +L+CTPGR++DH K + N++ LV+DEADR+LDM F P I I ++P R+T Sbjct: 161 PHILVCTPGRLMDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPIIDKILKVIPKERRTF 220 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT +++K+ L NP RI V++ ST +T+ ++ + + K L ++ + Sbjct: 221 LFSATMTSKVEKLQRASLHNPVRIAVSSKFSTVDTLLQKYL--FFPFKHKDTYLVYIV-N 277 Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ IIF N + V L SL GFS +HG + Q SR+ L+ FK G + Sbjct: 278 EMAGQSMIIFTRTVNDTQRVAILLRSL---GFSAIPLHGQLSQSSRLGALNKFKSGARSI 334 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP V V N+D+P ++ YIHR+GRT RAGR GK+ LV + D++ Sbjct: 335 LVATDVAARGLDIPLVDAVINYDIPTDSKAYIHRVGRTARAGRSGKSIALVTQYDLEPFL 394 Query: 359 AIEKLIEKKVD 369 IE I+KK++ Sbjct: 395 RIEAAIQKKME 405 >gi|299769392|ref|YP_003731418.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1] gi|298699480|gb|ADI90045.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1] Length = 383 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 140/374 (37%), Positives = 223/374 (59%), Gaps = 12/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P++ A+ G+ + TPIQ K + L HD G AQTGTGKTA+F++ ++ Sbjct: 5 FETLNLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVIND 64 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L ++ R R PR LIL PTRELA Q+ + + K +L + L+GG+ F+ Q K Sbjct: 65 LLHNPIQEQRFRGE-PRALILAPTRELALQIESDAKLLTKFSDLHIVTLLGGVDFDKQKK 123 Query: 118 KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L+ D+++ TPGR++D + ++ ++ IE LVIDEADR+LDMGFIP ++ I P Sbjct: 124 QLDANFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPR 183 Query: 177 --TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL+FSAT + ++ ++ +L P +E+ T +E Q K L Sbjct: 184 KEQRQTLMFSATFSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQ--DKYRL 241 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ +L+ ++ + +IF N++ V L L++ G+ V + G I Q R+K+L FK+G Sbjct: 242 LQDILR-EEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLEQFKQG 300 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A RG+ + V HV N+ +P ++++Y+HRIGRTGRAG G + + ++++D Sbjct: 301 KNNVMIATDVAGRGIHVDGVSHVINYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDA 360 Query: 355 KHIDAIEKLIEKKV 368 ++ IEK I KK+ Sbjct: 361 FYLPEIEKAIGKKL 374 >gi|71275290|ref|ZP_00651577.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Dixon] gi|71902030|ref|ZP_00684074.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|71164099|gb|EAO13814.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Dixon] gi|71728209|gb|EAO30396.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] Length = 544 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 224/375 (59%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F+ L P ++ + AG+ TPIQ T+P+ L D+ G AQTGTGKT +F++ ++ Sbjct: 10 LNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGKTLAFLVVVV 69 Query: 61 TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L V PR LIL PTRELA Q+ ++ K+G N L AL+ GG+ ++ Q Sbjct: 70 NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +GADV+I TPGR++D+ + +++ + EI V+DEADRM D+GFI I+ I +P Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +RQTLLFSAT++ + +++ ++ P+++ T S T + + +K Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIY--FPAEEEKIP 247 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + M+ ++F N K V + +L++ G+ V + G++ QR R +L+ F++ Sbjct: 248 LLLGLLSRSEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 306 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 307 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 366 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 367 AMSLPDIEAYIEQKI 381 >gi|282600167|ref|ZP_05973223.2| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM 4541] gi|282566628|gb|EFB72163.1| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM 4541] Length = 476 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/372 (38%), Positives = 226/372 (60%), Gaps = 11/372 (2%) Query: 3 FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA+L P + L + G++ TPIQ +P +L DV A+TG+GKTA+F L +L Sbjct: 23 FAELNALPSEQLSNLNELGFLTMTPIQEAALPAILAGQDVRAQAKTGSGKTAAFGLGLLQ 82 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ A+ ++L+L PTRELA QVA+ + + NL + L GG+PF Q L Sbjct: 83 HID---AKNFNTQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSLA 139 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 A V++ TPGR+LDH ++ + +++++ LV+DEADRMLDMGF I I S P RQT Sbjct: 140 HAAHVIVATPGRLLDHLHKETVNLDHLQTLVLDEADRMLDMGFSDEIDAIISFAPHQRQT 199 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239 LLFSAT + + +S+ NP+ IE+N+ + + + + VA + K LLQ+LL Sbjct: 200 LLFSATWPESIADISQRIQNNPQTIEINSVNELPDVEQQFYEVARH----DKIELLQKLL 255 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+D + +IFCN KK+ + +L SV +HG+++QR R + L F G+ +++ Sbjct: 256 -SRDQPASCVIFCNTKKDCQAVFDALNDSKQSVLVLHGDMEQRDRDQTLVRFANGSSRVL 314 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDI + V NF++ E ++HRIGRT RAG+ G A +L + E+ + +A Sbjct: 315 VATDVASRGLDIKALEMVINFELSWDPEVHVHRIGRTARAGQSGLAISLCSPEEAQRANA 374 Query: 360 IEKLIEKKVDWL 371 +E+++ K++WL Sbjct: 375 LEEMLNMKLNWL 386 >gi|257413647|ref|ZP_04743689.2| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia intestinalis L1-82] gi|257202759|gb|EEV01044.1| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia intestinalis L1-82] Length = 553 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 217/368 (58%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L P+V+ A+ + G+ + TPIQ + IP+V+ DV G AQTGTGKTASF +P+L Sbjct: 29 FDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHK 88 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 ++ + ++ +IL PTRELA QVAD K K + + + + GG Q K L+ Sbjct: 89 VDPNNKKTQV---IILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISRQIKALKG 145 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 GA ++I TPGR++DH R + + +V+DEAD ML+MGF I+ I +P RQT Sbjct: 146 GAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQT 205 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM + +++ + + I+V T IE + + K +L +LL Sbjct: 206 VLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDV--KRKDKIEVLTRLLD 263 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K ++FCN K+ V L L+ +G+ +HG++ Q R +++ F+ G ++++ Sbjct: 264 YYNP-KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILI 322 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G+AFT V +++ + I Sbjct: 323 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 382 Query: 361 EKLIEKKV 368 + + K+ Sbjct: 383 MRYCKTKI 390 >gi|255589747|ref|XP_002535074.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223524093|gb|EEF27309.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 465 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/344 (38%), Positives = 206/344 (59%), Gaps = 7/344 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL+P ++ A+ + GY +PT IQ IP +L+ DV G AQTG+GKTA+F LP+L Sbjct: 3 MSFSTLGLAPSLLNAIAEIGYDEPTAIQRAAIPAILRGEDVLGAAQTGSGKTAAFALPLL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL--TVALLIGGIPFEAQNKK 118 L R R L+L PTRELA QV ++ K + ++ VA++ GG+ Q Sbjct: 63 QSLLDNRDGPRQLHGLVLVPTRELAVQVGESIRKLVSHLSMPVKVAIVFGGVSINPQMMA 122 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L GAD+++ TPGR+LD + L ++ +LV+DEADR+LD+GF + I +L+P R Sbjct: 123 LRGGADIVVATPGRLLDLIDHNALKISRAAMLVLDEADRLLDLGFSEELNRILALLPKQR 182 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 Q L FSAT +QK++++ L P RIEV + P+S + ++ A ++ LL+ Sbjct: 183 QNLFFSATFPPAVQKLADSILHQPARIEVLSEPASKPDIVQR---AIAVDVPRRTMLLKH 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+Q + + ++F K ++ L + G + HG + Q +R + L++F+ G +Q Sbjct: 240 LIQ-EHQWRGVMVFVATKYAADHVADKLNRNGIRAASFHGELSQGARTETLTDFRSGRLQ 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 +VA+D+AARG+DI + V N+D+P A +Y HRIGRTGRA R Sbjct: 299 ALVATDVAARGIDIARLPAVVNYDLPRSAVDYTHRIGRTGRAAR 342 >gi|221124370|ref|XP_002163179.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Hydra magnipapillata] Length = 594 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 224/371 (60%), Gaps = 20/371 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL---------QRHDVCGIAQTGTGKTA 53 F +LGL+P +V A D GY +PT +Q K IPL + + D+ +QTG+GKTA Sbjct: 44 FVELGLAPALVQACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKTA 103 Query: 54 SFVLPML-TILEKGRARVRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIP 111 +F+LP+L T+L K P LI+ PTRELA QVA D + L VA ++GG+P Sbjct: 104 AFLLPVLHTLLFK----APTPGALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMP 159 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 ++ Q KL+ A++++ TPGR+LD ++ ++ ++ LV+DEADRMLD+GF + I Sbjct: 160 YQLQIAKLQN-ANLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLAEIN 218 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSK 230 L +QT++FSAT +Q+++ ++ P+R+ +++P I+ F A AQ+ + Sbjct: 219 QLTIDRKQTMMFSATFAPRIQQLAARVMREPQRVTIDSPQEKHANIKQVLFWADNAQHKR 278 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K LL L+ T+ ++F + + L + L++ GFS A+HG + Q R + L Sbjct: 279 K--LLDHWLRDT-TINQAVVFASTQIECDGLANDLQQDGFSAVALHGALSQGLRNRRLMA 335 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 ++G +Q++VA+D+AARG+D+P + HVFNF +P +AE+Y HRIGRTGRAGR G A T Sbjct: 336 LRQGQVQILVATDVAARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAE 395 Query: 351 KEDIKHIDAIE 361 D + I IE Sbjct: 396 FRDRRKIFDIE 406 >gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae] Length = 469 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 218/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 ++DLGL + A + P+ IQ ++IP+ LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 41 WSDLGLVDVLCKACEQLKWKTPSKIQRESIPVALQGKDIIGLAETGSGKTAAFALPILQA 100 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + R LIL PTRELA Q+++ FE G + +++GG+ +Q L + Sbjct: 101 LLENPQR---HFALILTPTRELAFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKK 157 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR++DH + K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 158 PHIIIATPGRLVDHLSNTKGFNLRALKFLVMDEADRILNMDFEAEVDKILKVIPRERRTF 217 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT ++ K+ LQ+P R+EV+T T E + +V A++ K L+ L + Sbjct: 218 LFSATMTKKVNKLQRACLQDPVRVEVSTKYQTVEKLLQYYVFIPAKF-KDVYLVHIL--N 274 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + ++FC+ N + L GF+ +HG + Q R+ L+ FK ++++ Sbjct: 275 ENAGNSFMVFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNRSILIS 334 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ IE Sbjct: 335 TDVASRGLDIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIE 394 Query: 362 KLIEKKV 368 LI K++ Sbjct: 395 HLIGKQL 401 >gi|301778305|ref|XP_002924562.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Ailuropoda melanoleuca] Length = 935 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 213/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|157145669|ref|YP_001452988.1| ATP-dependent RNA helicase DbpA [Citrobacter koseri ATCC BAA-895] gi|157082874|gb|ABV12552.1| hypothetical protein CKO_01417 [Citrobacter koseri ATCC BAA-895] Length = 457 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/354 (38%), Positives = 214/354 (60%), Gaps = 8/354 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P +L DV A+TG+GKTA+F L +L ++ A + ++L+L Sbjct: 22 GYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHID---ASLFQTQSLVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 +G + ++ ++ LV+DEADRMLDMGF I + P RQTLLFSAT + + +S Sbjct: 139 KGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPSRRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 QNP IE+++ + +IE F T +Q K LLQ+LL SQ + ++FCN KK+ Sbjct: 199 QQNPLTIEIDSVDAL-PSIEQQFFETSSQ--GKIPLLQKLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 ++C +L G S ++HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QSVCDALNSVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372 NF++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++WL Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWLT 368 >gi|88802153|ref|ZP_01117681.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Polaribacter irgensii 23-P] gi|88782811|gb|EAR13988.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Polaribacter irgensii 23-P] Length = 452 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 212/373 (56%), Gaps = 6/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL LS ++ A+ D G+ +PTPIQ + +V DV GIAQTGTGKT +++LP+L Sbjct: 1 MTFEDLDLSNQLQYAIDDLGFERPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + PR LIL PTREL QV + + K N V + GG Q + ++ Sbjct: 61 RDLPFSKQQ--HPRVLILVPTRELVLQVVEQITQLSKYINTRVLGVYGGANINTQRQAIQ 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ TPGR+ D L M +I LVIDE D MLD+GF + NI ++P RQ Sbjct: 119 QGQDIIVATPGRLYDLAISNSLKMKSIHKLVIDEVDVMLDLGFRFQLMNIFDVIPEKRQN 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATMT+++ + +F +NP++I V + + IE AT + K LL LL+ Sbjct: 179 ILFSATMTEDVDALIYDFFKNPEKISVAVSGTPLDNIEQVSYAT-PNFFTKVNLLHTLLK 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS--VCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++T +IF K+ L LE + F+ +C IH N Q R++ + F EG ++ Sbjct: 238 DRETFHKVLIFVGFKRTADLLFKHLE-EAFNDEICVIHSNKTQNYRIRSIRQFDEGKNRI 296 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+ ARGLD V HV NFD P+ ENY+HRIGRTGRA + GK ++ + Sbjct: 297 LLATDVMARGLDFDKVSHVINFDTPDFPENYMHRIGRTGRAEKAGKTILFSTPKEQEAKG 356 Query: 359 AIEKLIEKKVDWL 371 IE L+ ++ L Sbjct: 357 GIEVLMNYEIPLL 369 >gi|152977712|ref|YP_001343341.1| ATP-dependent RNA helicase SrmB [Actinobacillus succinogenes 130Z] gi|150839435|gb|ABR73406.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes 130Z] Length = 440 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 211/362 (58%), Gaps = 4/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P+++ A+ GY +PT IQ ++IP+ ++ D+ G A TGTGKTA+F+LP L Sbjct: 6 FDDFDLAPELLKALAKKGYDRPTAIQQESIPVAMEEQDLLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ + + L++A + GG+ ++ + + Sbjct: 66 LLDYPRKKPGAPRILVLTPTRELAMQVAEQAGELAQFTKLSIATITGGVAYQNHGEVFNK 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++EIL+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL Q ++ L NP +I V + I + + K L+ + + Sbjct: 186 LFSATLEGELLQDFADRILDNPAKIAVEPSRRERKKINQWYYHADS-VEHKIKLVARFI- 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +Q+ + GI+F ++++V L +L K+G + G + Q R + K G + ++V Sbjct: 244 AQENVTKGILFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNSIDKLKNGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI D+ HV NFD+P A+ Y+HRIGRT RAG+ G A + V D + + I Sbjct: 304 ATDVAARGIDIDDISHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVENHDYRLLGKI 363 Query: 361 EK 362 ++ Sbjct: 364 KR 365 >gi|241563473|ref|XP_002401718.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] gi|215501910|gb|EEC11404.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] Length = 371 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 213/364 (58%), Gaps = 13/364 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 3 NFNLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLIDSFI 62 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K Y + A+LIGG P Q +L++ Sbjct: 63 KNKTTA-----LILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQLKKNPK 117 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 V+I TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P RQ L+FS Sbjct: 118 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKRQVLMFS 177 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + +S+ +L NP RI V + A I E ++ ++S+ L +QL + Sbjct: 178 ATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKFSE---LTKQLGNRE 234 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 ++ IIF K++ L L+ + AIHG++ Q R +++ +F++ ++MVA+ Sbjct: 235 GSV---IIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVAT 291 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ AI++ Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWRAIDR 351 Query: 363 LIEK 366 L+ K Sbjct: 352 LVNK 355 >gi|90409933|ref|ZP_01217950.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK] gi|90329286|gb|EAS45543.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK] Length = 462 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 216/371 (58%), Gaps = 16/371 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGL ++ + + Y +PTPIQ + IP VL D+ A TG+GKTA+F LP+L Sbjct: 42 NFTELGLISPLLARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPILQ 101 Query: 62 ILEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPF 112 L + + ++ LIL PTRELA QVAD+ + Y ++N + + GG+ Sbjct: 102 HLFQQQHANKPLSSKGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSA 161 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + + Sbjct: 162 NTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLD 221 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKK 231 L+P +QTLLFSAT +++Q +++ L +P +E+ S+ A T ++ F + K Sbjct: 222 LLPKNKQTLLFSATFPEQVQALTQELLNDP--VEIQLQSADASTLVQRVFTVNKGE---K 276 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ALL L++ Q + +IF N K + +L L K+G + HG+ Q +R ++L F Sbjct: 277 TALLAHLIK-QHEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVLEAF 335 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K G I++++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A +L+ Sbjct: 336 KSGEIEVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDH 395 Query: 352 EDIKHIDAIEK 362 +D H IEK Sbjct: 396 DDYHHFKVIEK 406 >gi|78779495|ref|YP_397607.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312] gi|78712994|gb|ABB50171.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. MIT 9312] Length = 593 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 214/371 (57%), Gaps = 7/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D G + ++ ++ + GY PTPIQ IP ++ D+ G AQTGTGKTA+F LP++ Sbjct: 53 FLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEK 112 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYG-KNYNLTVALLIGGIPFEAQNKKLER 121 L + + L++ PTRELA QVA++F+ Y ++ N + GG + Q L+R Sbjct: 113 LADNKEL--NAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKR 170 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV++ TPGRI+DH +G +N+I LV+DEAD ML+MGF+ I+ I +P +Q + Sbjct: 171 KVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMV 230 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +E++ +++ +L +P I + + + I F+ Y Q K L+++L+ Sbjct: 231 LFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFL--YVQRHHKLDALKRILEL 288 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF K ++ +LE G SV ++G+I Q R + K+G I ++VA Sbjct: 289 NN--EGVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVA 346 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ + V N+D P E Y HRIGRTGRAGR G+A V + + +E Sbjct: 347 TDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLE 406 Query: 362 KLIEKKVDWLN 372 K++ +N Sbjct: 407 NSTRTKIEEIN 417 >gi|168704554|ref|ZP_02736831.1| ATP-dependent RNA helicase [Gemmata obscuriglobus UQM 2246] Length = 523 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 215/372 (57%), Gaps = 11/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADL L ++ A+ AGY PTPIQ IP L+ DV G AQTGTGKTA+F++P L Sbjct: 86 MLFADLKLMRPLMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFL 145 Query: 61 TILEKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 R R ++ P +++ PTRELA Q+A+ EK + + GG + Q Sbjct: 146 N-----RWRPHTLKGPIGVVMTPTRELALQIANEAEKLAPSKRFRCVPVYGGTGMQRQLD 200 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG D+++ TPGR+LDH RG + ++ + V+DEADRMLD+GF I+ I P Sbjct: 201 GLTRGCDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSE 260 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLL SAT+ D ++++ ++++P + + T + I + +K LL++ Sbjct: 261 RQTLLMSATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTV--DQDRKFELLKR 318 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ + + +IF +K+ NL L++ IHG++ Q R KI++ F+ I+ Sbjct: 319 VVEREKP-RQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIK 377 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++A+D+ +RG+D+ + HV N+D+P ENY+HRIGRTGR G+ G A + V E +H+ Sbjct: 378 YLIATDVMSRGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHL 437 Query: 358 DAIEKLIEKKVD 369 IE +I + ++ Sbjct: 438 TNIEMMINRLIE 449 >gi|89902343|ref|YP_524814.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118] gi|89347080|gb|ABD71283.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118] Length = 421 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 208/365 (56%), Gaps = 6/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLSP ++ A+ D + PTPIQ + LQ D+ AQTG+GKTA+F LP+L Sbjct: 1 MPFSSLGLSPALLRAISDQAWSAPTPIQAVAMGPALQGRDLLASAQTGSGKTAAFALPLL 60 Query: 61 TILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNK 117 E + R R LIL PTREL+ QV + G++ L V+++ GG+ Q Sbjct: 61 QQFEAAVPQSPRRLRALILVPTRELSTQVGEEIRFLGQHLPRALKVSIVFGGVSINPQML 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L GAD+++ TPGR+LD + L ++ + LV+DEADR+LD+GF + I +L+P Sbjct: 121 RLRGGADIVVATPGRLLDLIDHNALSLSGVATLVLDEADRLLDLGFAEELNRILALLPVQ 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ L FSAT +Q +++ L++P RIEV T IE + A +++ LL+ Sbjct: 181 RQNLFFSATFPPAVQTLAQVLLRDPVRIEVAPEPQTQPDIEQRVIEVDA--AQRTQLLRH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+ +Q ++F K + L K + HG + Q R ++L++FK ++ Sbjct: 239 LM-AQHHWSRVLVFVATKHAAEMVADKLRKARINAEPFHGELSQGKRTQVLADFKASRLK 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + V NFD+P A +YIHRIGRTGRAG G A + V+ H Sbjct: 298 VVVATDVAARGLDIAQLPVVVNFDLPRSALDYIHRIGRTGRAGEKGVALSFVSAATDAHW 357 Query: 358 DAIEK 362 IEK Sbjct: 358 RLIEK 362 >gi|42521946|ref|NP_967326.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] gi|39574476|emb|CAE77980.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] Length = 412 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 220/374 (58%), Gaps = 6/374 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LS ++ + D G+ + T IQ K IP +L+ DV IAQTGTGKTA+F +P++ Sbjct: 1 MKFEKFHLSEDLLRNLTDNGFFRTTDIQYKAIPSILKGEDVLAIAQTGTGKTAAFAIPII 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++ EK R + LIL PTRELA Q+ + F K K+ + L GG+ +AQ +K Sbjct: 61 NMIHTEKSSKRAIGIKCLILVPTRELAQQIGEVFNKLSKHTKVKPFALFGGVEQDAQIQK 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+LI TPGR+ D +G + ++ IE LV+DEAD MLD+GFI I ++ + Sbjct: 121 LQDGIDILISTPGRMFDLIAQGHVDISRIETLVLDEADHMLDLGFIDDITSVKRKLTKRH 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTL FSAT+ E++K++ + +++ RI+++ ++ I H FV K+ L + Sbjct: 181 QTLFFSATINPEIKKLAFSQVRSSAIRIQISPEDPVSKNITH-FVMHVEMDDKRFFLAEY 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q+ D IIF + + +L + +HG DQ R +++ F++G + Sbjct: 240 LRQNPDG--KFIIFVRTRVRAERVAKALARVEVQSLTLHGEKDQTDRAEVMKTFRKGDCK 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+DL+ARG+DIPDV HV N+D+P + ENY+HRIGRTGR G A + + E+ + Sbjct: 298 ILIATDLSARGIDIPDVTHVINYDLPEKPENYVHRIGRTGRGFNKGVAVSFCSTEEKPLL 357 Query: 358 DAIEKLIEKKVDWL 371 +E LI KK++ L Sbjct: 358 AEVESLITKKIEVL 371 >gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina 98AG31] Length = 537 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 210/370 (56%), Gaps = 10/370 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++ G ++ + AG+ +P+PIQ + P+ L DV I+ TG+GKT +F LP + Sbjct: 108 NFSEAGFPDYIMAEIRKAGFTEPSPIQCQAWPMALSGRDVVAISATGSGKTIAFSLPAMI 167 Query: 62 ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L G P LIL PTRELA Q+ K+G + + + GG+P Q Sbjct: 168 HINAQPLLAPGDG----PIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQ 223 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L RGA+++I TPGR++D + + + LV+DEADRMLDMGF P I+ I + Sbjct: 224 IRDLSRGAEIVIATPGRLIDMLESRRTNLQRVTYLVMDEADRMLDMGFEPQIKKILEQIR 283 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTL+FSAT E+Q+++ +L++ ++ V + TA V + + KK L+ Sbjct: 284 PDRQTLMFSATWPKEIQRLANEYLKDFIQVNVGSLELTANVNITQIVEVCSDFEKKGKLI 343 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + L + +IF K+ +L L + G+ AIHG+ Q R +L FK G Sbjct: 344 KHLEKISAESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQTERDWVLGEFKSGR 403 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +M+A+D+A+RGLD+ DV +V N+D+PN E+YIHRIGRTGRAGR G A++ ++ + K Sbjct: 404 SPIMIATDVASRGLDVKDVAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQGK 463 Query: 356 HIDAIEKLIE 365 + K+++ Sbjct: 464 LARELVKILQ 473 >gi|152965134|ref|YP_001360918.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans SRS30216] gi|151359651|gb|ABS02654.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans SRS30216] Length = 565 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 213/370 (57%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA+ G+ P++ ++ AG P PIQ T+P+ L HD+ G A+TGTGKT F +P+L Sbjct: 30 FAEHGVDPRIAQSLAGAGITTPFPIQSMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLQR 89 Query: 61 TILEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 T + A +P + L++ PTRELA QVA + +NY + + GG +E Q Sbjct: 90 TAVPGDPAYDALPNPGKPQALVIVPTRELATQVAGDLTTASRNYPARILTVYGGRAYEPQ 149 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L +G DV++ TPGR+LD + L ++N++ +V+DEAD MLD+GF+P ++ + + Sbjct: 150 IDALTKGVDVVVGTPGRLLDLAQQRHLDLSNVKCVVLDEADEMLDLGFLPDVERLIAQTD 209 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 RQT+LFSATM + ++ +++ P I P+ T+ Y ++ K + Sbjct: 210 PARQTMLFSATMPGPVVAMARSYMSRPTHIRAVDPTDDGATVAAITQFAYRTHALDKVEV 269 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++LQ+ I+F K+ ++ L ++GF+ +IHG++ Q +R + L F+ G Sbjct: 270 LARMLQATGRGLT-IVFSRTKRTAASVAEQLTERGFAAASIHGDLGQGAREQALRAFRHG 328 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ P + Y+HRIGRTGRAG G A T V +++ Sbjct: 329 KVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYLHRIGRTGRAGNTGVAVTFVDWDEL 388 Query: 355 KHIDAIEKLI 364 I+K + Sbjct: 389 PRWSLIDKAL 398 >gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185] gi|149131036|gb|EDM22242.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185] Length = 420 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 224/373 (60%), Gaps = 11/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ + IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115 L +G+ +I+ PTRELA Q+ E G +Y + +VA+ G GI FE Q Sbjct: 61 NKLSEGKHPEDAINCVIMSPTRELAQQIDQQME--GFSYFMPASSVAVYGGNDGILFEQQ 118 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 119 KKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT++FSATM ++Q+++ L NP I++ + I+ +V Q K ++ Sbjct: 179 KERQTIMFSATMPAKIQQLANTILNNPSEIKLAVSRPADKIIQAAYVCYENQ---KLGII 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + L + + IIF + K V + +L+ +V +H +++Q R ++ +FK G Sbjct: 236 RNLFMDE-VPERVIIFASSKIKVKEVTKALKSMKLNVGEMHSDLEQVQREAVMHDFKAGR 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+ ARG+DI D+ V NFDVP+ +E+Y+HRIGRT RA G A T V++++ Sbjct: 295 INILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVSEKEQS 354 Query: 356 HIDAIEKLIEKKV 368 + +IE +EK++ Sbjct: 355 NFKSIENFLEKEI 367 >gi|206576701|ref|YP_002238858.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342] gi|206565759|gb|ACI07535.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342] Length = 457 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 218/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F+ L + P A L + GY+ TP+Q +P +L DV A+TG+GKTA+F L +L Sbjct: 4 FSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R + +L+L PTRELA QVA + + N+ + +L GG PF AQ L+ Sbjct: 64 HIDPARFETQ---SLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH +G + ++ ++ LV+DEADRMLDMGF I + P RQT Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + +S +NP+ IE++T + IE F K ALLQ LL Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEIDTVDAL-PAIEQQFFEV--SRHGKIALLQHLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 SQ + ++FCN K++ +C +L G S ++HG+++QR R + L F G+++++V Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382 +++ ++WL + PL Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378 >gi|157838001|ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus] gi|123796460|sp|Q810A7|DDX42_MOUSE RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD box protein 42 gi|74146847|dbj|BAE41388.1| unnamed protein product [Mus musculus] gi|123242261|emb|CAM23778.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus] Length = 929 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L +L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|148827621|ref|YP_001292374.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG] gi|148718863|gb|ABQ99990.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG] Length = 439 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/383 (35%), Positives = 215/383 (56%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL ++ L +P R++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFADRLLNDPVRVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFIRRREDARELSETLRKRGIRSAYLEGKMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ KV L G PP Sbjct: 364 KRYTEEILKVRILAGLEPRTKPP 386 >gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM 11300] gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM 11300] Length = 591 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 211/368 (57%), Gaps = 14/368 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L ++P++ + + G + +PIQ +++P L D+ G A+TGTGKT +F LP++ Sbjct: 1 MNFDQL-IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPII 59 Query: 61 TIL-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L R R R+PR +++ PTRELA QVA+ F K G L+ + GG + Q Sbjct: 60 QNLTAPDGRGSRERGRLPRAIVIAPTRELAKQVAEEFSKSGPQ--LSTVTVYGGAAYGPQ 117 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L RG DV++ TPGR++DH RG L ++ I+ V+DEAD ML +GF I+ I P Sbjct: 118 ENALRRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTP 177 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCA 233 RQT+LFSAT+ DE+ +++ +L+ P +++ S A+++EH V + Sbjct: 178 AARQTMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKV---GRTRTR 234 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 +L LL + K I+F K+ L + L +G A+HG++ Q R + L F+ Sbjct: 235 VLADLLTVYNPEK-AIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRS 293 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G + ++VA+D+AARGLDIP+V V + +P E+Y+HR GRTGRAGR G A + + Sbjct: 294 GRVGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRE 353 Query: 354 IKHIDAIE 361 + + +E Sbjct: 354 NRELRNLE 361 >gi|326566475|gb|EGE16625.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC1] Length = 380 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 149/381 (39%), Positives = 231/381 (60%), Gaps = 25/381 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F DL LS ++ AV + + TPIQ + +P L D G AQTGTGKTA+F ++T Sbjct: 8 NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATF---LIT 64 Query: 62 ILEKGRAR------VRM---PRTLILEPTRELAAQV-AD--NFEKYGKNYNLTVALLIGG 109 I+E R +R PR L+L PTRELA Q+ AD ++ + YNL + GG Sbjct: 65 IIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCIT---GG 121 Query: 110 IPFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168 F+ Q ++L +R D+LI TPGRI+D N+G+L ++ +E+ V+DEADRMLDMGFIP I+ Sbjct: 122 SDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIK 181 Query: 169 NITSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 I +P RQ+LLFSAT ++ ++ +L P +E+ S T + I+ F Sbjct: 182 RIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTE 241 Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 + +K + L+Q+L + D++K IIF N+K V L L + V + G++ Q+ R + Sbjct: 242 R--EKTSALKQIL-ADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRER 297 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L FK+G + ++VA+D+A RG+ + DV HV N+ +P+ ++Y+HRIGRTGRAG G + Sbjct: 298 YLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSI 357 Query: 347 TLVAKEDIKHIDAIEKLIEKK 367 + V++ D ++ A+E+ I++K Sbjct: 358 SFVSENDAFNLPALERHIDQK 378 >gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379] gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379] Length = 486 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/359 (38%), Positives = 214/359 (59%), Gaps = 7/359 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+S + V ++ + ++ PT IQ +TIP VL D+ AQTG+GKT +F +P++ Sbjct: 4 FEELGVSQETVQSLTNMNFISPTGIQTETIPYVLSGVDILAQAQTGSGKTGAFGIPLVDT 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + R ++LIL PTRELA QV + + L V+++ GG E Q + L++ Sbjct: 64 VR----RNDQLQSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQIQDLKKR 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH NR + + + LV+DEAD ML+MGFI ++ I S + QTLL Sbjct: 120 PQIIVGTPGRVIDHINRRTIKLETLTHLVLDEADEMLNMGFIEDVRFILSKITSRHQTLL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++S+ F+++ K I+ + I AT A+ ++K L L Q Sbjct: 180 FSATMPKTIMELSKEFMKDYKLIKTMSDEDLKPDITEY--ATIARENEKLETLVGFLDVQ 237 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+F K+ V L +L +G+ +HG+I Q R++IL FK ++Q++VA+ Sbjct: 238 NP-NLAIVFGRTKRRVDELASALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVAT 296 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 D+AARG+DI DV HV+NFD+P E+Y HRIGRTGRAG+ G A T + ++ ++ IE Sbjct: 297 DVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEMPYLKDIE 355 >gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC 43184] gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC 43184] Length = 427 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/409 (34%), Positives = 235/409 (57%), Gaps = 10/409 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L V+ + +++ TP+Q TIP++L+ D+ AQTGTGKTA++VLP++ Sbjct: 1 MRFDELDLEEAVLDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L KG +I+ PTRELA Q+ E + ++ + GG I +E Q + Sbjct: 61 NELSKGLHPANAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +E GAD++I TPGR+L H G + ++ + V+DEADRMLDMGF I + L+P T Sbjct: 121 GMEMGADIVIATPGRLLSHIKLGTVDLSQVSFFVLDEADRMLDMGFYDDIMQVYKLLPAT 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT++FSATM +++ +++ L+NP+ +++ S ETI Y +K +L+ Sbjct: 181 CQTIMFSATMPPKIRTLAQTILKNPEEVKIAI-SRPPETIMQTAYVCYDM--QKLRILED 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L S+ + IIF + K V L +L++ F+V A+H +++Q R +++ FK G I Sbjct: 238 LF-SKSRPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRID 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356 ++VA+D+ +RG+DI D+ V NFD+P+ E+Y+HRIGRT R G A T ++ E+ Sbjct: 297 ILVATDVVSRGIDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGEGLAITFISTEEQFQ 356 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 IE+ ++K++ + D PL + + ++++ R+ P+K G Sbjct: 357 FKRIEEFLDKEIYKIPVDPKFGETPLYEPE--KYSNMRRGRGRPRKDGG 403 >gi|262042929|ref|ZP_06016074.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039769|gb|EEW40895.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 457 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 219/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F+ L + P A L + GY+ TP+Q +P +L DV A+TG+GKTA+F L +L Sbjct: 4 FSTLTVLPAAQLANLNELGYLSITPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R + +L+L PTRELA QVA + + N+ + +L GG PF AQ L+ Sbjct: 64 HIDPARFETQ---SLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH +G + ++ ++ LV+DEADRMLDMGF I + P RQT Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + +S +NP+ IE++T + IE F K ALLQ+LL Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEIDTVDAL-PAIEQQFFEV--SRHGKIALLQRLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 SQ + ++FCN K++ +C +L G S ++HG+++QR R + L F G+++++V Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382 +++ ++WL + PL Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378 >gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92] gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92] Length = 417 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/388 (36%), Positives = 217/388 (55%), Gaps = 8/388 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGLS + GY +PT IQ K IP VL+ HD+ A+TG+GKTA FVLP+L Sbjct: 1 MSFVSLGLSDFFTSTLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLL 60 Query: 61 TILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKN--YNLTVALLIGGIPFEAQNK 117 L A + L+L PTRELA QV+ + ++Y +N + + GG Q + Sbjct: 61 EKLHSIPAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQ 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G D+++ TPGR+LD + L + ++ LV+DEADRMLD+GF + +I P Sbjct: 121 SLSKGCDIVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGN 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTLLFSAT D++++++E L+NP I V ++ + + A + + LL+ Sbjct: 181 VQTLLFSATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQ--RAIEVDRNNRTMLLKH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ Q+ + +IF K+ N+ L + G +HG++ Q+ R+ L +F +G + Sbjct: 239 LIK-QEKWQQLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCK 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+DLAARG+DIP + V N+D+P +Y+HR GRT RAG G A + V E H Sbjct: 298 ILIATDLAARGIDIPSLPCVLNYDLPRATSDYVHRAGRTARAGEAGLAISFVDHESDAHF 357 Query: 358 DAIEKLIEKKV--DWLNGDLSSLNPPLE 383 IEK I K+ + + G + PP E Sbjct: 358 KLIEKRIRMKIPREQIPGFERAQEPPKE 385 >gi|294637929|ref|ZP_06716198.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685] gi|291088955|gb|EFE21516.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685] Length = 429 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 216/373 (57%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FAD L P V+ A+ G+ TPIQ +PL + DV G AQTGTGKT +F+ Sbjct: 11 FADFALHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLTHPAIAERKTNQPRALIMAPTRELAVQIHSDAEPLARETGLRLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE+G D+LI T GR++D+ +G + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LEQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPVA 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILDDFTKGH 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E + Sbjct: 307 IDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYVL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIENYIGHSI 379 >gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 429 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 223/371 (60%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ K+IP++L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MKFSELHLNGNVLEALDAMRFEECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +++ PTRELA Q+ E + ++ + GG I FE Q + Sbjct: 61 NKLSEGGHPADAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ N L NP +++ + ++ +V Q K +++ Sbjct: 181 RQTIMFSATMPAKIQQLAGNILNNPAEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L +++T + IIF + K V + +L++ +V +H +++Q R +++ FK G I Sbjct: 238 LF-AEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V++++ Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGSF 356 Query: 358 DAIEKLIEKKV 368 IEK +++ + Sbjct: 357 KNIEKFLDRDI 367 >gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 480 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 231/393 (58%), Gaps = 16/393 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F D S + + AG+ +PT IQ + P+ + D+ +A+TG+GKT F+LP Sbjct: 46 IEFGDAPFSDSIQKTLKSAGFERPTFIQSQAWPIAINGSDMICVAKTGSGKTCGFLLPSF 105 Query: 61 TILEKGRARV----RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + +A + P L+L PTRELA Q+ D +K+G+ + GG P AQ Sbjct: 106 HQYFQSKATANKGGKGPIMLVLAPTRELACQILDETQKFGRPIGIRSVCCYGGSPKYAQI 165 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 LERG + +I TPGR+ D K ++N++ +V+DEADRMLDMGF P I++I VP Sbjct: 166 AALERGVECVIATPGRLNDLIEMKKANLSNVKFVVLDEADRMLDMGFEPQIRSIMGSVPD 225 Query: 177 T--RQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKK 231 + RQTLLFSAT E+Q+++ +FL +P +I E+N ++ + + + + K Sbjct: 226 STNRQTLLFSATWPKEIQRLAFDFLSDPIQINVGEINVLNANKDITQKIMMCS---EDDK 282 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L+++L K I+F +K L + L +GF+V ++HG+ +Q R K+++ F Sbjct: 283 IDRLKEILTDLKHSKV-IVFVGKKYVAHELANQLWDEGFAVDSLHGDREQWERTKVINAF 341 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVP---NRAENYIHRIGRTGRAGRHGKAFTL 348 K+GT++L++A+D+AARGLD+ DVG V N+D+P N AE+YIHRIGRTGRAG G A+T+ Sbjct: 342 KQGTLRLLIATDVAARGLDVKDVGVVVNYDMPVGVNGAEDYIHRIGRTGRAGAKGIAYTM 401 Query: 349 VAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 D K + +++EK + +L ++ P Sbjct: 402 FTPGDKKLATQLVEILEKAEQEVPAELKAMARP 434 >gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium pseudotuberculosis FRC41] gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium pseudotuberculosis FRC41] gi|302205685|gb|ADL10027.1| Putative ATP-dependent RNA helicase [Corynebacterium pseudotuberculosis C231] gi|302330237|gb|ADL20431.1| Putative ATP-dependent RNA helicase [Corynebacterium pseudotuberculosis 1002] gi|308275920|gb|ADO25819.1| Putative ATP-dependent RNA helicase [Corynebacterium pseudotuberculosis I19] Length = 441 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 140/358 (39%), Positives = 207/358 (57%), Gaps = 10/358 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG++ ++V A+ + G IQ T+P+ L D+ G A+TG GKT F +P+L Sbjct: 10 FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFGVPLLDR 69 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + PR L++ PTRELA QV ++ E+ + + V + GG P+E Q + L Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQVL 129 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DV++ TPGR++D +G L ++++ ILV+DEAD MLD+GF P I+ + + Q Sbjct: 130 TAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQHQ 189 Query: 180 TLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 TLLFSATM + ++ F+ P I EVN S T +IE V A K A+ Sbjct: 190 TLLFSATMPGPVLTLARTFMSRPIHIRAEEVNA-SHTHASIEQ--VVFQAHRMDKTAITA 246 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + LQ+++ K IIF K+ L L +GF V +HG++ Q +R L F+ G + Sbjct: 247 RALQAKERGKT-IIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRV 305 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++VA+D+AARGLDI DV HV N+ P+ Y+HRIGRTGRAG G A TLV +++ Sbjct: 306 DILVATDVAARGLDIDDVTHVINYQTPDAPMTYVHRIGRTGRAGHTGTAITLVGYDEL 363 >gi|262280249|ref|ZP_06058033.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Acinetobacter calcoaceticus RUH2202] gi|262258027|gb|EEY76761.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Acinetobacter calcoaceticus RUH2202] Length = 640 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 222/376 (59%), Gaps = 13/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ G+ PT +Q + IP L+ D+ +QTG+GKTA+F+LP L Sbjct: 5 FAEFSLHETLQQALEGLGFTTPTTVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64 Query: 63 LE--------KGRAR-VRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPF 112 L K R + V P L++ PTRELA QV+ D + +A ++GG+PF Sbjct: 65 LAGQESVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGMPF 124 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q ++L +GA V++ TPGR+LD NR ++ ++ ++ L++DEADRMLD+GF ++ I+ Sbjct: 125 AKQIQQL-KGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISE 183 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L +QTL+FSAT D + +++ +++P RI + T ST I T + K Sbjct: 184 LAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDG-FEHKK 242 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL L S + + ++F + +++ L L + G SV A+HG + Q R + L + + Sbjct: 243 KLLTHWL-SDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIR 301 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 EG +++VA+D+AARGLD+P + HV NF +P + E+Y+HRIGRTGRAGR G+A TL Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYR 361 Query: 353 DIKHIDAIEKLIEKKV 368 + I A+E+ +E ++ Sbjct: 362 ERGKIRALEEYLEARL 377 >gi|117620545|ref|YP_858124.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561952|gb|ABK38900.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 407 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L+P + A+ + G+ +PT IQ + L D+ A TGTGKTA+F+LP L Sbjct: 5 FDDFDLNPALNRALAEMGFSRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLPALQH 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R L+L PTRELA QV + + + NL++ +IGG+ E Q L + Sbjct: 65 LLDFPRRKPGPCRMLVLTPTRELALQVTAHAKALAAHTNLSIETIIGGVSHEEQLPALTK 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ + + ++IE+LV+DEADRMLDMGFI + I + + T+ Sbjct: 125 TTDIVVATPGRLLEYIEKEEFESHDIEVLVLDEADRMLDMGFIKDVNRIVEEARYRKHTM 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ L+K + + L+ P + P S I +V + K ALL +L+ Sbjct: 185 LFSATLEGAGLEKFANDILKEPVELHAEPPRSERRPITQ-WVHLADDAAHKLALLVHILK 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +T K IIF ++ + L L+ G S I G ++Q R++ + F EG + ++ Sbjct: 244 DPETQK-AIIFVKTRERLAELSGQLQAAGVSCAWIRGEMEQSKRIESIRKFHEGEVPFLI 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P+V HV N+D+P A+ Y+HRIGRTGRAG G A +LV D+ + I Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAKI 362 Query: 361 EKLIEKKV 368 E+ E+++ Sbjct: 363 ERYTEERL 370 >gi|242059637|ref|XP_002458964.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor] gi|241930939|gb|EES04084.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor] Length = 578 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/373 (37%), Positives = 208/373 (55%), Gaps = 17/373 (4%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRA 68 A+ +G+V+PTPIQ + P+ L+ D+ GIAQTG+GKT S++LP L LE+G Sbjct: 173 AIAKSGFVEPTPIQSQGWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDG 232 Query: 69 RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128 P LIL PTRELA Q+ + K+G + GG P Q + L RG +++I Sbjct: 233 ----PIVLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIA 288 Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188 TPGR++D G + + LV+DEADRMLDMGF P I+ I + + RQTL +SAT Sbjct: 289 TPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWP 348 Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-ETIEHC--FVATYAQYSKKCALLQQLLQSQDTM 245 E++ ++ FLQNP ++ + +P A +I+ ++ + +Y + LL L+ + Sbjct: 349 REVEALARQFLQNPYKVTIGSPELKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRIL 408 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 IF KK+ + L G+ +IHG+ Q R +L+ FK G +M A+D+A Sbjct: 409 ----IFFQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVA 464 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 ARGLD+ D+ V N+D P E+YIHRIGRTGRAG G AFT + K + K++ Sbjct: 465 ARGLDVKDIKCVINYDFPTTLEDYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILR 524 Query: 366 KKVDWLNGDLSSL 378 + +N L S+ Sbjct: 525 EAGQAVNPALESM 537 >gi|167625006|ref|YP_001675300.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167355028|gb|ABZ77641.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 474 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 220/379 (58%), Gaps = 20/379 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L PK++ AV GY + T +Q + +P+ ++ D+ AQTGTGKTA+F LP+L Sbjct: 30 MNFDAFDLHPKILDAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLL 89 Query: 61 TIL-------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107 L + +++V++ L+L PTRELA QVADN Y + + Sbjct: 90 NRLIQEYNLFTEGDLEPEHQSKVKV---LVLTPTRELAIQVADNISAYAQFLPFKTTAVY 146 Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167 GG Q K L+ G D+L+ TPGR+ DH + L ++N+ LV+DEADRMLD+GF+ I Sbjct: 147 GGSNMNPQRKALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDI 206 Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227 + + LV T QTL FSAT ++ ++ ++E L P+ I V T ++ + + ++ Sbjct: 207 EKVKKLVAATHQTLFFSATYSEAVKTLAEKMLLAPEWINVATSATASLITQEVYL---VD 263 Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 +K LL +L+ ++ + ++F + +++ +L L+ G HG Q +R + Sbjct: 264 TRRKAELLSELI-GRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRA 322 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L FK G +++MVA+D+AARGLDI + V N ++P AE+Y+HR+GRTGRAG G+A + Sbjct: 323 LDEFKSGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAIS 382 Query: 348 LVAKEDIKHIDAIEKLIEK 366 V+ +D + + IE LIE+ Sbjct: 383 FVSPQDREMLQEIELLIEQ 401 >gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii DSM 2661] gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus jannaschii DSM 2661] Length = 367 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 227/372 (61%), Gaps = 14/372 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 M+F +L LS ++ A+ + G+ KPT IQ+K IPL L +++ A+TG+GKTASF +P+ Sbjct: 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPL 65 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++ + +IL PTRELA QVAD E N NL +A + GG Q K L Sbjct: 66 IELVNENNG----IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL 121 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + A++++ TPGRILDH NRG L + N++ ++DEAD ML+MGFI ++ I + ++ Sbjct: 122 -KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKR 180 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM E+ +++ ++ + I+ ++ IE +V +++ L +LL Sbjct: 181 ILLFSATMPREILNLAKKYMGDYSFIKAKINAN----IEQSYVEV--NENERFEALCRLL 234 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++++ G++FC K++ L L GF AIHG++ Q R K++ FK+ I+++ Sbjct: 235 KNKEFY--GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRIL 292 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+ +RG+D+ D+ V N+ +P E+Y+HRIGRTGRAG+ GKA +++ + + K + Sbjct: 293 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRY 352 Query: 360 IEKLIEKKVDWL 371 IE+ ++ K+ L Sbjct: 353 IERAMKLKIKKL 364 >gi|281422387|ref|ZP_06253386.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri DSM 18205] gi|281403550|gb|EFB34230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri DSM 18205] Length = 657 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 221/367 (60%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S ++ A+ + G+ P P+Q + IP +L ++DV +AQTGTGKTAS+ +P Sbjct: 4 FEELGVSEEIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTASYGIP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +++K A + + +IL PTREL Q+AD+ + K + L +A + GG +Q + L+ Sbjct: 61 VIQKTDASSKQTQAVILSPTRELCLQIADDLNSFAKYIDGLHIAAVYGGTDIGSQIRTLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR+LD NRG + N+ +V+DEAD ML+MGF I I VP R T Sbjct: 121 HGVQIIVATPGRLLDLINRGVAQLENVNNVVLDEADEMLNMGFSESINAIFENVPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ +++K++ N+L + K I V + + AE + H + A+ K L++++ Sbjct: 181 LLFSATMSKDIEKIALNYLHDHKEIVVGSRNEGAEHVNHIYYLVNAK--DKYLALKRVVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K ++ L K G++ A+HG++ Q+ R + F+ T+Q +V Sbjct: 239 FYPRI-FAIIFCRTKLETQDIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHTVQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ +Y HR GRTGRAG+ G + +++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDVASYTHRSGRTGRAGKKGTSISIIHTREKFKVRQI 357 Query: 361 EKLIEKK 367 EK I K+ Sbjct: 358 EKQIGKE 364 >gi|145634582|ref|ZP_01790291.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA] gi|229844418|ref|ZP_04464558.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1] gi|145268127|gb|EDK08122.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA] gi|229812667|gb|EEP48356.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1] Length = 439 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGSPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|325963995|ref|YP_004241901.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans Sphe3] gi|323470082|gb|ADX73767.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans Sphe3] Length = 564 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/400 (34%), Positives = 221/400 (55%), Gaps = 9/400 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD + +V ++ DAG P PIQ T+P+ L HD+ G A+TGTGKT F +P L Sbjct: 39 FADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQR 98 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + G ++ +P + L++ PTRELA QVA++ + + N +A + GG +E Q Sbjct: 99 VVGRDDAGYEKLAVPGAPQALVIVPTRELAVQVANDLQTASRKRNARIATIYGGRAYEPQ 158 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L+ G +V++ TPGR++D + + L + N++++++DEAD MLD+GF+P ++ + + P Sbjct: 159 VEALKNGVEVVVGTPGRLIDLYKQKHLSLKNVKVVILDEADEMLDLGFLPDVETLIAATP 218 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 RQTLLFSATM + ++ ++ P I P T Y +S K + Sbjct: 219 AVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKIEV 278 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + IIF K+ + L +GF+ AIHG++ Q +R + L F+ Sbjct: 279 VARILQAKGRGRT-IIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNN 337 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ + Y+HR+GRTGRAG G A T V +D+ Sbjct: 338 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDM 397 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 I K + V SS E +DI + R Sbjct: 398 PRWGLINKALGLSVPEPIETYSSSPHLYEDLDIPEGTKGR 437 >gi|270158633|ref|ZP_06187290.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968] gi|289166549|ref|YP_003456687.1| ATP-dependent RNA helicase [Legionella longbeachae NSW150] gi|269990658|gb|EEZ96912.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968] gi|288859722|emb|CBJ13695.1| putative ATP-dependent RNA helicase [Legionella longbeachae NSW150] Length = 470 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 224/373 (60%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L L +++ ++ A Y TPIQ +++P++L+ D+ AQTG+GKTA+F L +L Sbjct: 11 ISFSSLPLRQELIKSLASANYENMTPIQTQSLPIILKNQDIIAQAQTGSGKTAAFALSLL 70 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ V+ L+L PTRELA QV+ + N+ + L GGIP + Q L Sbjct: 71 NNLKISFFAVQ---GLVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMKPQLDSL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA +++ TPGRIL H G L ++ ++ LV+DEADRMLDMGF +++I S+ P RQ Sbjct: 128 RHGAHLIVGTPGRILKHLKNGSLDLSQLKALVLDEADRMLDMGFFDDMKSIISVCPKQRQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +E++++S+ F+ NP+ I V +P+ E+ + T + ++K LL+ LL Sbjct: 188 TLLFSATYPEEIKQISKQFMNNPQEIRVESPAEEINIEEYFYEVT--KQAQKFPLLKSLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +IFCN ++ V + L ++GFS A++G+++Q R + F + ++ Sbjct: 246 LHYRPVST-LIFCNTRQQTVEVTDLLIEEGFSAIALNGDMEQVDRDLAVLRFANHSCSIL 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI ++ V NFD+ E +IHRIGRTGRAG G A ++ D + I A Sbjct: 305 VATDVAARGLDIKELSTVINFDLAFDHEVHIHRIGRTGRAGCKGIALSITTPADAQRICA 364 Query: 360 IEKLIEKKVDWLN 372 IE + ++W N Sbjct: 365 IEDNMPHPINWGN 377 >gi|322794838|gb|EFZ17785.1| hypothetical protein SINV_13785 [Solenopsis invicta] Length = 586 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 155/395 (39%), Positives = 222/395 (56%), Gaps = 27/395 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F ++ L+ + ++ AGY KPTP+Q IP++++R DV AQTG+GKTA+F++P+L Sbjct: 171 FDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIERRDVMACAQTGSGKTAAFLVPILNQ 230 Query: 62 ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 I E G R + P L+L PTRELA Q+ D K+ + A++ GG Sbjct: 231 IYESGPRPPPPQANSSSRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGS 290 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 Q ++L+RG +L+ TPGR++D RGK+ ++N LV+DEADRMLDMGF P I+ I Sbjct: 291 NIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRFLVLDEADRMLDMGFEPQIRRI 350 Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 +P T RQTL+FSAT E+Q ++ +FL N + V ST+E I V + Sbjct: 351 VQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIV--WV 408 Query: 227 QYSKKCALLQQLLQ----SQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 + K + L LLQ S T ++ ++F KK L L G+ V +IHG+ Q Sbjct: 409 EEHDKRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRTQ 468 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 R R L F+ G ++VA+ +AARGLDIP V HV NFD+P E Y+HRIGRTGR G Sbjct: 469 REREDALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGN 528 Query: 342 HGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WLN 372 G A + ++ + D + LIE + WL+ Sbjct: 529 LGLATSFFNHKNHNLVRDLVSLLIEANQELPSWLD 563 >gi|84393643|ref|ZP_00992394.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01] gi|84375711|gb|EAP92607.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01] Length = 436 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 221/383 (57%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P+V+ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K GR + PR +I+ PTRELA Q+ ++ + ++ + AL GG ++ Q Sbjct: 71 LLKTPEHEGR-KPNQPRAIIMAPTRELAIQIYNDADSLVESTGIKAALAYGGESYDKQLG 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+E GAD+LI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELF--YPSNEHKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R KIL F +G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ Sbjct: 307 VDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ IE+ IE + + D S+L Sbjct: 367 NLPPIEEYIEHAIPMSDYDASAL 389 >gi|116671331|ref|YP_832264.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp. FB24] gi|116611440|gb|ABK04164.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24] Length = 585 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 140/401 (34%), Positives = 219/401 (54%), Gaps = 11/401 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD + +V ++ DAG P PIQ T+P+ L HD+ G A+TGTGKT F +P L Sbjct: 39 FADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGIPALQR 98 Query: 63 LEKGR--------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + GR A P+ L++ PTRELA QVA + E + N +A + GG +E Sbjct: 99 V-VGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAARKRNARIATIYGGRAYEP 157 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L++G ++++ TPGR++D + + L + N++I+++DEAD MLD+GF+P ++ + + Sbjct: 158 QVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIAGT 217 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCA 233 P RQTLLFSATM + ++ ++ P I P T Y +S K Sbjct: 218 PAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKIE 277 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 ++ ++LQ++ + IIF K+ + L +GF+ AIHG++ Q +R + L F+ Sbjct: 278 VVARILQARGRGRT-IIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRN 336 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 + ++VA+D+AARG+D+ DV HV N+ + Y+HR+GRTGRAG G A T V +D Sbjct: 337 NKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDD 396 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 + I K + V SS E++DI + R Sbjct: 397 MPRWGLINKALGLSVPEPVETYSSSPHLYEELDIPEGTKGR 437 >gi|195069886|ref|XP_001997052.1| GH22580 [Drosophila grimshawi] gi|193891570|gb|EDV90436.1| GH22580 [Drosophila grimshawi] Length = 793 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 217/379 (57%), Gaps = 24/379 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F + G V+ + G+ KPT IQ + +P+ L D+ +AQTG+GKT ++VLP + Sbjct: 146 IEFEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAV 205 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L+L PTRELA Q+ ++G N + + GG P Sbjct: 206 VHINNQPRLERGDG----PIALVLAPTRELAQQIQAVASEFGSNTQVRNTCIFGGAPKGQ 261 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 262 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 321 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYS 229 RQ L++SAT E+++++E FL N ++ + + S +A + ++ C S Sbjct: 322 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVC------DES 375 Query: 230 KKCALLQQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 +K A L QLL S + IIF KK V + ++ +QG+ CAIHG+ Q+ R + Sbjct: 376 EKIAKLVQLLTQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFV 435 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 LS+F+ G ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+T Sbjct: 436 LSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYT 495 Query: 348 LVAKEDI-KHIDAIEKLIE 365 L + K D I+ L E Sbjct: 496 LFTHSNANKANDLIQVLRE 514 >gi|89072528|ref|ZP_01159100.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34] gi|89051632|gb|EAR57085.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34] Length = 412 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 215/370 (58%), Gaps = 7/370 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF++L L +++ A+ + GY +PT +Q + IP L DV A TGTGKTA+F+LPM+ Sbjct: 3 DFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQ 62 Query: 62 ILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L+ R R R LIL PTRELA QVAD K L V + GGI ++ + L Sbjct: 63 HLQDFPRKRPGPARILILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDEHAEMLG 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+++ TPGR++++ K +E L++DEADRMLDMGF ++ + + RQ+ Sbjct: 123 KTQDIVVATPGRLMEYIEAEKFDCRAVECLILDEADRMLDMGFGKIVERLNHECRWRRQS 182 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQL 238 LLFSAT+ + +++ SE L P +EVN PS H K ALL+ + Sbjct: 183 LLFSATLEGKGVREFSETILNEP--VEVNADPSRRERKKIHQMYLRCDNMDHKLALLENI 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ Q + IIF ++ + L LE G I G + Q +R +++ F++G + + Sbjct: 241 IKEQ--AERTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMITRFRDGVVNV 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+PDV HV NFD+P AE Y+HRIGRT RAG+ G A +LV D I+ Sbjct: 299 LIATDVAARGIDLPDVSHVINFDLPRTAEVYVHRIGRTARAGKKGTAISLVEAHDQNMIE 358 Query: 359 AIEKLIEKKV 368 I + ++++V Sbjct: 359 RISRYMKEEV 368 >gi|256379849|ref|YP_003103509.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] gi|255924152|gb|ACU39663.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] Length = 501 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 202/358 (56%), Gaps = 5/358 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++LGL+ ++V A+ AG +P PIQ T+P L D+ G QTG+GKT +F L +L+ Sbjct: 56 FSELGLADELVRALATAGITEPFPIQAATLPDSLAGRDLLGRGQTGSGKTLAFGLALLSR 115 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L GRA+ MPR L+L PTRELA QV + + + L ++GG F Q L RG Sbjct: 116 LAGGRAKPHMPRALVLVPTRELAMQVEEALSPFARALGLWCRTVVGGTSFPRQIDALRRG 175 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+LI TPGR+ DH +G ++ + +DEAD+M DMGF+P ++ I L P Q LL Sbjct: 176 VDLLIATPGRLSDHVRQGTADLSEVMFTALDEADQMADMGFMPQVRAILDLTPENGQRLL 235 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++ K+ +L +P V P+ + T+EH + A+ K+ + + + Sbjct: 236 FSATLDGDVDKLVRQYLHDPVVHSVAPPTGSVTTMEHHLLFVSAE-DKQSVVTEVAAREG 294 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 T I+F K +V L L G A+HG Q +R ++L F+EGT +++A+ Sbjct: 295 RT----IMFVRTKHHVDRLAKKLRSMGVHAGALHGGKAQSARTRVLGQFREGTTPVLIAT 350 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 D+AARG+ + DV V + D P ++Y+HR GRT RAG+ G TLV + + + + Sbjct: 351 DVAARGIHVDDVSLVVHVDPPADPKDYLHRAGRTARAGQSGTVVTLVTHDQRRAVQGL 408 >gi|54297986|ref|YP_124355.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Paris] gi|53751771|emb|CAH13194.1| hypothetical protein lpp2042 [Legionella pneumophila str. Paris] Length = 468 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/373 (37%), Positives = 224/373 (60%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L +++ ++ + Y TPIQ++++P++L+ D+ A+TG+GKTA+F L +L Sbjct: 11 LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLL 70 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ V+ L+L PTRELA QV+ + N+ + L GGIP + Q L Sbjct: 71 NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDSL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA +++ TPGRIL H L ++ ++ LV+DEADRMLDMGF I+NI S+ P RQ Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQRQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +E++++S+ F+++PK + V TP + +H + +++++K LL+ LL Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFY--EVSRHAQKFPLLKSLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + +IFCN K+ V + L +GFS A++G+++Q R + F + ++ Sbjct: 246 LHYRPV-SVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQVERDLAVLRFANQSCSIL 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI ++ V NFD+ + +IHRIGRTGRAG G A ++V D + I A Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364 Query: 360 IEKLIEKKVDWLN 372 IE + W N Sbjct: 365 IEDNYPHPIHWGN 377 >gi|328470391|gb|EGF41302.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329] Length = 416 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 149/370 (40%), Positives = 219/370 (59%), Gaps = 19/370 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FADLGL P +V + Y +PTPIQ IP VL D+ G A TG+GKTA+F LP+L Sbjct: 10 FADLGLIPTLVERLEALEYNQPTPIQSHAIPHVLDGRDMIGGANTGSGKTAAFSLPILQK 69 Query: 62 ILEKGRA---RVRMPRTLILEPTRELAAQVADNFEKYGKNYNL-----TVALLIGGIPFE 113 IL++G + R LIL PTRELA+QVA N + Y +Y+L TVA+ GG+ Sbjct: 70 ILQQGESNDRRGNFVSHLILVPTRELASQVAYNVKSY--SYHLRDKIKTVAVF-GGVSVN 126 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L G D+++ TPGR+LD + + ++ ++ LV+DEADRML +GF + I +L Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 +P +QTLLFSAT +++ ++++ L +P +EV S+ A T ++ F + K Sbjct: 187 LPEKKQTLLFSATFPEKVTTLAQHLLNDP--VEVQLQSAEASTLVQRVFSVNKGE---KT 241 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 A+L L++ + +IF N K +L L K+G + HG+ Q +R ++L FK Sbjct: 242 AVLAHLIKKHQ-WRQILIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK 300 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G IQ+++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G +L+ + Sbjct: 301 SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD 360 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 361 DYHHFKVIEK 370 >gi|109896916|ref|YP_660171.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c] gi|109699197|gb|ABG39117.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c] Length = 459 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 215/371 (57%), Gaps = 10/371 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ LGL ++ + G+ + T IQ T+P +L+ DV A+TG+GKTA+F L +L Sbjct: 4 EFSSLGLEAALLDNLQSMGFSQMTEIQAGTLPAILEGRDVVAKAKTGSGKTAAFGLALLH 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120 L+ R RV+ L++ PTRELA QVA + G+ +N+ V L GG P Q LE Sbjct: 64 NLDVKRFRVQ---ALVMCPTRELAEQVALEIRRLGRGIHNIKVLTLCGGTPMGPQIGSLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGRI+DH + +L ++ + LV+DEADRMLDMGF + + VP RQT Sbjct: 121 HGAHIIVGTPGRIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPEQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLL 239 LLFSAT D + +S ++P + V + T +TIE F A +K A L Sbjct: 181 LLFSATYPDSIAAISGQVQKSPLEVTVESTHDT-DTIEQVFFEVEDAHRTKAVAALLSHY 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + + I+FCN K + L+ G SV A+HG+++QR R ++L F + ++ Sbjct: 240 QPE----SAIVFCNTKIACQEVADELQSMGVSVLALHGDLEQRERNQVLVRFANKSASVL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDI +V V ++ + E +IHRIGRTGRA G A TLVA +++ +A Sbjct: 296 VATDVASRGLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEMARANA 355 Query: 360 IEKLIEKKVDW 370 IE + K+ W Sbjct: 356 IEDYQKAKLKW 366 >gi|156391217|ref|XP_001635665.1| predicted protein [Nematostella vectensis] gi|156222761|gb|EDO43602.1| predicted protein [Nematostella vectensis] Length = 777 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 210/375 (56%), Gaps = 34/375 (9%) Query: 10 PKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----- 63 P + ++D GY PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F +P+L + Sbjct: 358 PDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPK 417 Query: 64 -EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E+ + P LIL PTRELA Q+ + K+G+ + +IGG+ E Q +L G Sbjct: 418 IERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGLSREDQGFQLRLG 477 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P + Sbjct: 478 VEIVIATPGRLIDVLENRYLVLNRCSYIVMDEADRMIDMGFEPEVQKILEHLPVSNVKPD 537 Query: 178 -------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE 218 RQT++F+ATM +++++++N+L+ P + + + E +E Sbjct: 538 SEDSEDPEHLLTHMGKDKYRQTVMFTATMPPQVERLAKNYLRRPAVVYIGSVGKPVERVE 597 Query: 219 HCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278 Q +K L +LL ++D IIF NQKK L SLEK GF +HG Sbjct: 598 QRVYLVNEQQKRKKLL--ELL-NKDLEPPIIIFVNQKKGADVLAKSLEKMGFRATTLHGG 654 Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338 +Q R LS+ K G+ ++VA+D+A RG+DI DV HV N+D+ E+Y HRIGRTGR Sbjct: 655 RNQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIGRTGR 714 Query: 339 AGRHGKAFTLVAKED 353 AG+ G A + + + D Sbjct: 715 AGKTGIAVSFLTQSD 729 >gi|237786051|ref|YP_002906756.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM 44385] gi|237758963|gb|ACR18213.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length = 558 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 156/442 (35%), Positives = 250/442 (56%), Gaps = 24/442 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG++ ++V A+ + G IQ T+PL L D+ G A+TG GKT ++ +P+L Sbjct: 94 FEELGVAAEIVDALAEHGITHTFAIQELTLPLALDGKDLIGQARTGMGKTLAYGVPLLDR 153 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNF---EKYGKNYN-----LTVALLIGGIP 111 + A + PR L++ PTRELA QVAD+ ++ N+N L V + GG P Sbjct: 154 IFDDAAIPELDGTPRALVVAPTRELAYQVADDLTLAARHLANFNEEHRSLRVTTICGGHP 213 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 FE Q +L G D ++ TPGR+LD +L ++++ +LV+DEAD MLD+GF+P I+ I Sbjct: 214 FEKQIAQLREGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKIL 273 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 VP RQT+LFSATM + ++ F+ P I + VA K Sbjct: 274 QQVPEKRQTILFSATMPAPIMALARTFMNKPVHIRAEGTDDSTTHTTTKQVAFKNHKLNK 333 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 A L +LQ+ + + IIF K++ ++ L ++GF V A+HG++ Q +R K L+ F Sbjct: 334 LATLSAILQAHNRGRT-IIFTRTKRSAADVADDLAQRGFLVGAVHGDMAQPAREKSLNAF 392 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + I+++VA+D+AARG+D+ DV HV N+ VP+ A Y+HRIGRTGRAG G A TLV Sbjct: 393 RSKKIEILVATDVAARGIDVDDVTHVINYQVPDDAMTYVHRIGRTGRAGHTGTAVTLVGW 452 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLS---SLNPPL-EKIDIAQHNHAR--KNNPIPQKSTG 405 +++ K+I+ ++D G+L S +P L E +DI + R ++ P+ + Sbjct: 453 DEVTKW----KVIDDELDLNIGELDEWFSTSPELREALDIPDDVNERVGESRPVYGGAKA 508 Query: 406 FDRRKKNYSSQKSHIPLKESEK 427 ++K S++++ P +++ + Sbjct: 509 LSPQRK--SAKRASRPRRDNRR 528 >gi|255572963|ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 505 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 139/391 (35%), Positives = 217/391 (55%), Gaps = 20/391 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D+G V+ V AG+V+PTPIQ + P+ L+ D+ GIA+TG+GKT +++LP + Sbjct: 101 FRDVGFPDYVLEEVTRAGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH 160 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 IL G P L+L PTRELA Q+ K+G + + + GG+P Q Sbjct: 161 VNAQPILAPGDG----PIVLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQV 216 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L++G +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 217 RDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRP 276 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHC-FVATYAQYSKKCA 233 RQTL +SAT E+++++ FL NP ++ + + A +H V+ +Y+K Sbjct: 277 DRQTLYWSATWPKEVEQLARQFLYNPYKVVIGSADLKANHAIRQHVDIVSENQKYNKLVK 336 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ ++ + IF + KK + L G+ +IHG+ Q R +LS FK Sbjct: 337 LLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 392 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +M A+D+AARGLD+ DV V N+D P E+Y+HRIGRTGRAG G A+T + Sbjct: 393 GKSPIMTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTASN 452 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN---PP 381 + + ++E+ ++ +L+++ PP Sbjct: 453 ARFAKELISILEEAGQKVSPELAAMGRGAPP 483 >gi|195439780|ref|XP_002067737.1| GK12550 [Drosophila willistoni] gi|194163822|gb|EDW78723.1| GK12550 [Drosophila willistoni] Length = 800 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 145/402 (36%), Positives = 222/402 (55%), Gaps = 20/402 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPT IQ + P+ L D+ G+AQTG+GKT +++LP + Sbjct: 136 FEEGGFPDYVMNEVRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYILPAVVH 195 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P L+L PTRELA Q+ ++G N + + GG P Q Sbjct: 196 INNQPRLERGDG----PIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQA 251 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 252 RDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRP 311 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ L++SAT E+++++E FL N ++ + + S +A V + K L+ Sbjct: 312 DRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNIRQIVDVCDESEKIVKLIN 371 Query: 237 QLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L S ++ IIF KK V + ++ +QG+ CAIHG+ Q+ R +LS+F+ G Sbjct: 372 LLTDISAESETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGR 431 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI- 354 ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL + Sbjct: 432 HSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNAN 491 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKN 396 K D I+ L E ++NP L + ++ + ++N Sbjct: 492 KANDLIQVLREAN--------QTINPKLMNMAMSGGGYQKRN 525 >gi|153950343|ref|YP_001400107.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP 31758] gi|170023425|ref|YP_001719930.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis YPIII] gi|152961838|gb|ABS49299.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP 31758] gi|169749959|gb|ACA67477.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis YPIII] Length = 441 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 139/354 (39%), Positives = 203/354 (57%), Gaps = 4/354 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L +++ A+ D GY +PT IQ IP + DV G A TGTGKTA+F+LP L Sbjct: 5 NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + PR LIL PTRELA QVAD + K L +A + GG+ + + Sbjct: 65 HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 DV++ T GR+L + +E L++DEADRMLDMGF I+ I++ + +QT Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQT 184 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ E +++ +E L P +E + + I+ + K ALL LL Sbjct: 185 LLFSATLEGEAIREFAERILNEPVELEADPSRRERKKIQQWYYRA-DDIKHKTALLCHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D K+ IIF ++ V L L + G + + G + Q R + + +G + ++ Sbjct: 244 KQPDVSKS-IIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+A+RGLDI D+ HVFNFD+P A+ Y+HRIGRTGRAGR G A +LV D Sbjct: 303 VATDIASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLVEAHD 356 >gi|197285752|ref|YP_002151624.1| ATP-dependent RNA helicase SrmB [Proteus mirabilis HI4320] gi|227356264|ref|ZP_03840653.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906] gi|194683239|emb|CAR43939.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320] gi|227163728|gb|EEI48644.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906] Length = 451 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 213/371 (57%), Gaps = 6/371 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+ L L ++ A+ + GY +PT IQ + IP ++ D+ G A TGTGKTA+F+LP + Sbjct: 6 FSSLELDESLLTALEEKGYQRPTAIQAEAIPAAMEGRDILGSAPTGTGKTAAFLLPAIQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD ++ + +L +A + GG+ + + Sbjct: 66 LLDYPRKKSGPPRVLILTPTRELAMQVADQAKELCAHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E+L++DEADRMLDMGF I+ I + +QTL Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVEMLILDEADRMLDMGFANDIETIAGETRWRKQTL 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT+ + + ++ L P +E+N PS F K ALL LL Sbjct: 186 LFSATLEGNAVIDFAQRILNEP--VELNADPSRRERKKIQQFYYHADNLDHKTALLAHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q+ +K I+F +++ V L +LEKQG + G + Q R + + + G + ++ Sbjct: 244 K-QEEVKKSIVFVRKRERVRELAAALEKQGIKASYLEGEMAQTQRNEAIKRVESGKMHVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+A+RGLD+ D+ HVFNFD+P A+ Y+HRIGRTGRAGR G A +LV D + Sbjct: 303 IATDVASRGLDLEDITHVFNFDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHDYPLLGK 362 Query: 360 IEKLIEKKVDW 370 I + I++ + + Sbjct: 363 ISRYIQEPIKY 373 >gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM 70294] gi|160358661|sp|A7TS37|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3 gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM 70294] Length = 506 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 146/378 (38%), Positives = 217/378 (57%), Gaps = 28/378 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L P+++ A + + KPTPIQ ++IP LQ HD+ G+AQTG+GKTA+F +P+L Sbjct: 88 FSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNR 147 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + A ++GG+ Q + L R Sbjct: 148 LWHDQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMRK 204 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 ++I TPGR++DH N + ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 205 PHIIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTT 264 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+ T +T+ + TY Y Sbjct: 265 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTYLIY----- 319 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 L ++ K I+F K N + L + LE FS A+HG+++Q R L Sbjct: 320 -----LMNEFIGKTIIVFTRTKANAERITTLANLLE---FSATALHGDLNQNQRTGSLDL 371 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 372 FKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 431 Query: 351 KEDIKHIDAIEKLIEKKV 368 + D++ I IE ++ KK+ Sbjct: 432 QYDLELILRIEDVLGKKL 449 >gi|254302223|ref|ZP_04969581.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322415|gb|EDK87665.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 529 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 215/372 (57%), Gaps = 16/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F +LGLS KV+ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFE----NLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ ++DEAD ML+MGF+ I+ I + ++ Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM DE+ KV++ ++ + + V + T + E + V ++ C ++ Sbjct: 185 LFFSATMPDEIMKVAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 358 LLQIQKAVKKEI 369 >gi|84625712|ref|YP_453084.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898959|ref|YP_202940.2| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae KACC10331] gi|188574752|ref|YP_001911681.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae PXO99A] gi|67461243|sp|Q5GUR8|RHLB_XANOR RecName: Full=ATP-dependent RNA helicase rhlB gi|84369652|dbj|BAE70810.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519204|gb|ACD57149.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 574 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L P +V + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 11 FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q + Sbjct: 71 LLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130 Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TRQTLLFSAT++ + +++ + P+++ V T + TA + + +K LL Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDDEKQTLL 248 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++G Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367 Query: 356 HIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 368 SLPDIEAYIEQKI 380 >gi|311279320|ref|YP_003941551.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter cloacae SCF1] gi|308748515|gb|ADO48267.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1] Length = 457 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 139/352 (39%), Positives = 208/352 (59%), Gaps = 8/352 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY TP+Q T+P +L DV A+TG+GKTA+F L +L ++ A + ++L+L Sbjct: 22 GYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHID---ASQFITQSLVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA K + N+ V L GG+PF Q L +++ TPGR+LDH Sbjct: 79 PTRELADQVASALRKLARFMPNIKVLTLCGGLPFSVQRDSLTHAPHIIVATPGRLLDHLK 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ ++ LV+DEADRMLDMGF + + + P RQTLLFSAT E+ +S Sbjct: 139 KETVSLDALQTLVLDEADRMLDMGFADALDEVIAWAPEKRQTLLFSATWPAEIAAISRRI 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 ++P IE++T +E F S K LLQ LL SQ + ++FCN KK+ Sbjct: 199 QRDPLTIEIDTVDEL-PAVEQRFYEV--SRSGKIGLLQTLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L SV A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALSDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALEMVI 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370 N+++ E ++HRIGRT RAG G A +L A E+ + +A+E+++ K+DW Sbjct: 315 NYELSWDPEVHVHRIGRTARAGERGLAISLCAPEEAQRANALEEMLNVKLDW 366 >gi|165977454|ref|YP_001653047.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165877555|gb|ABY70603.1| ATP-dependent RNA helicase protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 449 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 8 MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QV++ + + + L++A + GG+ ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVSEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL ++ L NP +I+ + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + M+ I+F ++++V L +L K+G + G++ Q R + ++ KEG + + Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV +V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 366 KIKRYTEE 373 >gi|58428518|gb|AAW77555.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 647 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L P +V + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 84 FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 143 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q + Sbjct: 144 LLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 203 Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 204 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 263 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TRQTLLFSAT++ + +++ + P+++ V T + TA + + +K LL Sbjct: 264 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDDEKQTLL 321 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++G Sbjct: 322 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 380 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 381 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 440 Query: 356 HIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 441 SLPDIEAYIEQKI 453 >gi|317051368|ref|YP_004112484.1| DEAD/DEAH box helicase domain-containing protein [Desulfurispirillum indicum S5] gi|316946452|gb|ADU65928.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum S5] Length = 488 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 213/369 (57%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F LGLS + + A+ + G+ KPT IQ IPLVL +H DV G AQTGTGKTA+F LP++ Sbjct: 10 FESLGLSAQTLQALREKGFEKPTSIQKACIPLVLHQHVDVVGQAQTGTGKTAAFGLPIIE 69 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ R R + LIL PTRELA QVAD + L +A L GG Q +KL R Sbjct: 70 TVKPER---RQIQALILTPTRELALQVADEITSLCGSMKLDIATLYGGQSIGLQIQKLRR 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G + + TPGRI D +RG L ++++E +V+DEAD ML+MGFI I+NI P ++ L Sbjct: 127 GVHIAVGTPGRIQDLIDRGNLDLSHLEYVVLDEADEMLNMGFIEDIENILQHTPAEKRML 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ ++ + + T + + ++ + L + Sbjct: 187 LFSATMPRPILNLAKRYMSTYEHVVAEQTQKTTSLTDQIYYEV-----READKFEALCRV 241 Query: 242 QDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + G++FC K + + L+ + + A+HG++ Q R KIL F+ + ++ Sbjct: 242 IDITPDFYGVVFCRTKVDADEITRRLQHRKYVTEALHGDVSQNQREKILDAFRRKRLNIL 301 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ ++ HV NF +P E+Y+HR+GRTGRAG+ G A T ++ + + + Sbjct: 302 VATDVAARGIDVQNLTHVINFSLPQSPESYVHRVGRTGRAGKEGTAITFISPAEFRKLAF 361 Query: 360 IEKLIEKKV 368 I+K+ + + Sbjct: 362 IQKITQTTI 370 >gi|145636310|ref|ZP_01791979.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH] gi|145270475|gb|EDK10409.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH] Length = 439 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R ++ PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKLGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSEILRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILEGLEPRTKPP 386 >gi|320106012|ref|YP_004181602.1| DEAD/DEAH box helicase domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924533|gb|ADV81608.1| DEAD/DEAH box helicase domain protein [Terriglobus saanensis SP1PR4] Length = 501 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 146/406 (35%), Positives = 215/406 (52%), Gaps = 36/406 (8%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D +S K+ + +V PTP+Q K IP L+ DV A TGTGKT SF++PM+ Sbjct: 31 VQFNDFNISEKLKQRLAANNFVNPTPVQAKAIPPALEGRDVLATAATGTGKTLSFLIPMI 90 Query: 61 TILEK---------------------GRAR----------VRMP-RTLILEPTRELAAQV 88 ++ GR R R P R LIL PTRELA QV Sbjct: 91 ERMDANPLAALVQQVAQEQAPQPPQYGRQRGGRNNPPPRGPRAPIRALILLPTRELAMQV 150 Query: 89 ADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIE 148 D + K N L+ GG+ AQ L RG +++ TPGR+ D+ R ++ +NN+E Sbjct: 151 LDAYAKIVPNAKQDSVLVCGGLSEGAQLDALRRGPRLVVATPGRLEDYLKRREINLNNVE 210 Query: 149 ILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN 208 +LV+DE DRMLDMGF+P I+ I +P TRQT+ +SAT+ + ++ +++ NP RI++ Sbjct: 211 MLVLDEVDRMLDMGFLPAIRRIVGALPKTRQTMCYSATLDANITEIVRDYVSNPIRIQIG 270 Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 T S E +E A +K +LL QLL + ++F K + LEK Sbjct: 271 TTSKPNERVE--LRAFTVMQDQKLSLLDQLLGEH--AGSYLVFSRTKHGADRIAKKLEKL 326 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 G IHG+ Q R L +F G +++VA+D+AARG+DI + HV N+D+PN +++ Sbjct: 327 GHETDVIHGDRSQSQRTAALKSFAMGRSRVLVATDVAARGIDIQHIAHVVNYDLPNGSDD 386 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374 ++HRIGRTGRA G A T V ++ +E+ ++ W D Sbjct: 387 FVHRIGRTGRASASGVATTFVMPQERSDARKLERELKISFKWAEAD 432 >gi|71747632|ref|XP_822871.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927] gi|70832539|gb|EAN78043.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei] Length = 512 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 145/419 (34%), Positives = 246/419 (58%), Gaps = 12/419 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL +++ A +AG+ PT IQ+ TIP+V + D+ G+AQTG+GKT ++VLP++ Sbjct: 42 FKSLGLCEELIGACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLVNW 101 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +A+V L++ PTRELA QVA F G + L VA L+GG Q +L R Sbjct: 102 LLT-QAKVPYLSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACELSRR 160 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGR+ DH N K + + LV+DEAD+ML+M + I I +P RQTL Sbjct: 161 PHVVVGTPGRVKDHLNNTKGFQLVKLHALVLDEADKMLEMDYEKEINAILEHLPHNRQTL 220 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT++ ++ ++ L +P +EV+ ++T +T++ +V +A +++ L L + Sbjct: 221 LFSATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYV--FAPFAQMLPYLHLYL-T 277 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +++ + ++FC V + +L G + G +DQ++R L+ FKEG ++++V Sbjct: 278 RESGNHILVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVRILVC 337 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A RGLDIP V NF +P+R E+YIHR+GRT RAG GKA ++++ DI + +E Sbjct: 338 TDVAQRGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDIVLLQKVE 397 Query: 362 KLIEKKV-DW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 K +W +GD++++ L++++ A+ ++ Q++ F+R + ++ + Sbjct: 398 ASTGVKCEEWPISDGDVAAV---LQRVEDAEQEAVKEMRESDQEAK-FEREARQLTTAR 452 >gi|258577027|ref|XP_002542695.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704] gi|237902961|gb|EEP77362.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704] Length = 1336 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 210/373 (56%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPTPIQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 921 FDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 980 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 981 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPRGPQI 1036 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 1037 RDLARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 1096 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E+++++ +FL + ++ + + +A V + + K+ ++Q Sbjct: 1097 DRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIQ 1156 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + + D K+ I IF K+ + L + G+ +IHG+ Q R +L+ FK G Sbjct: 1157 HMERIMDDKKSKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 1216 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG +G A TL ++ K Sbjct: 1217 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTDNAK 1276 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 1277 QARDLVNILTESK 1289 >gi|148702332|gb|EDL34279.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Mus musculus] Length = 927 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 253 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 312 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 313 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 368 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 369 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 428 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 429 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 488 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L +L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 489 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 547 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 548 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 604 >gi|319898057|ref|YP_004136254.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031] gi|317433563|emb|CBY81947.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031] Length = 439 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 137/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + GI+F ++++V L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEKVTR-GIVFVRRREDVRELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|283834551|ref|ZP_06354292.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220] gi|291069681|gb|EFE07790.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220] Length = 422 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 215/373 (57%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALENKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADSKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P T Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTT 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ I+F N K ++ SL G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis] gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis] Length = 794 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 213/373 (57%), Gaps = 12/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F + G V+ + G+ KPT IQ + +P+ L D+ +AQTG+GKT ++VLP + Sbjct: 143 IEFEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAV 202 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L+L PTRELA Q+ ++G N + + GG P Sbjct: 203 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQ 258 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 259 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 318 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ L++SAT E+++++E FL N ++ + + S +A V + K L Sbjct: 319 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIVKL 378 Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 +Q L Q S + IIF KK V + ++ +QG+ CAIHG+ Q+ R +LS+F+ Sbjct: 379 IQLLTQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 438 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL + Sbjct: 439 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 498 Query: 354 I-KHIDAIEKLIE 365 K D I+ L E Sbjct: 499 ANKANDLIQVLRE 511 >gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens QYMF] Length = 484 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 135/400 (33%), Positives = 229/400 (57%), Gaps = 12/400 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+D LS +++ ++ + PT +Q + IP +L+ D+ +QTG+GKTA+F +P+ Sbjct: 5 NFSDYQLSDELLKSISMLNFESPTKVQQQVIPAILEHKDIIVKSQTGSGKTAAFAIPICQ 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ + P+ L+L PTRELA QV ++ G+ L VA + G PF Q K+L++ Sbjct: 65 LVDWDENK---PQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPFYHQEKELKQ 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGRI+DH +G + I+ LVIDEAD M +MGF+ I+ I + R T+ Sbjct: 122 KTHVVVGTPGRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTM 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 L SATM ++ +S ++++P E+ SS + I +Y K LL + Sbjct: 182 LLSATMPSAIETLSNRYMKDPIHAEIEEESSAVDRISQERYT--VEYRDKMKLLSDITIV 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + IIFCN K+ V + L + ++ IHG ++QR R+++++ FK+G + +VA Sbjct: 240 ENP-DSCIIFCNTKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNEFKQGYFRYLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI ++ V N+D+P E+Y+HRIGRTGR R G+A T V + + K + I Sbjct: 299 TDVAARGIDIDNISLVINYDIPQDKESYVHRIGRTGRISREGRAITFVTQYEDKFLKDIH 358 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 + I K++ + P +E ++ ++ K N P+ Sbjct: 359 RYIGKEIPLMQ------RPEIETVNDSKEEFVEKINTKPE 392 >gi|237736924|ref|ZP_04567405.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817] gi|229420786|gb|EEO35833.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817] Length = 545 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 218/367 (59%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LGLS K + A+ GY +PTPIQ TIP +L D+ G AQTGTGKTA+F LP+L Sbjct: 7 FRELGLSEKTLKALAKKGYEQPTPIQALTIPALLNGDKDIIGQAQTGTGKTAAFSLPILE 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 E + + + ++L PTRELA QVA+ + + + GG E Q ++L++ Sbjct: 67 NFEPSK----VIQAIVLAPTRELALQVAEEMNSLAHGKKIRITPVYGGQSIEFQIRQLKK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR++D R + + +++ ++DEAD ML+MGF+ I+ I ++ L Sbjct: 123 GTDIIVGTPGRVIDLMERKLIKLQDLKYFILDEADEMLNMGFVEDIEKILEATNEDKRML 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM +E+ K+++N +++ + + V T + + + + + K AL + + + Sbjct: 183 FFSATMPNEIMKIAKNHMKDYEVLAVKARELTTDLTDQIYFEVHEK-DKFEALCRIIDLT 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D GI+FC K + +L L +G+ +HG+I Q R L FK I ++VA Sbjct: 242 RDFY--GIVFCRTKNDANDLVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ D+ HV N+ +P AE+Y+HRIGRTGRAG+ G A T + ++ + + I+ Sbjct: 300 TDVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQ 359 Query: 362 KLIEKKV 368 ++++ ++ Sbjct: 360 RIVKTEI 366 >gi|303315651|ref|XP_003067830.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii C735 delta SOWgp] gi|240107506|gb|EER25685.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii C735 delta SOWgp] gi|320034056|gb|EFW16002.1| ATP-dependent RNA helicase DBP2 [Coccidioides posadasii str. Silveira] Length = 545 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 209/373 (56%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPTPIQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 130 FDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 189 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 190 INAQPLLGPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 245 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 246 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 305 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E+++++ +FL + ++ + + +A V + + K+ ++ Sbjct: 306 DRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIN 365 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + D K+ I IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 366 HLERIMDDKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 425 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A TL ++ K Sbjct: 426 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAK 485 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 486 QARDLVNILTESK 498 >gi|332028992|gb|EGI69006.1| ATP-dependent RNA helicase vasa [Acromyrmex echinatior] Length = 795 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 142/387 (36%), Positives = 225/387 (58%), Gaps = 19/387 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F GL ++ + +GY KPTP+Q IP+++ D+ AQTG+GKTA+FV+P+L T Sbjct: 288 FDQSGLRTILLENIKKSGYTKPTPVQKYAIPIIMNGQDLMACAQTGSGKTAAFVVPILHT 347 Query: 62 ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +LE + ++ P +I+ PTREL +Q+ +K+ + L GG Q+ Sbjct: 348 LLEDPKDLIKTSTSCEPHVIIISPTRELTSQIHQQVKKFSLGSIIRAELAYGGTSVMHQS 407 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI---TSL 173 ++ G +L+ TPGR+LD RGK+ ++++ LV+DEADRMLDMGF+P I+ + ++ Sbjct: 408 NRVLNGCHILVATPGRLLDFIGRGKIRLSSLRFLVLDEADRMLDMGFLPDIEKLIDHETM 467 Query: 174 VPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 P RQTL+FSAT +E+Q+++ FL+N + V +E F Q S+K Sbjct: 468 APAEERQTLMFSATFPNEIQELASRFLRNYLFLAVGIVGGACADVEQNFYQASGQ-SEKR 526 Query: 233 ALLQQLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 LL++L++ Q + N ++F QK++ + L + F +IHG+ QR R + L Sbjct: 527 KLLKELIEKQHQLGNIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEALY 586 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 +FK G + ++VA+ +AARGLDI +V HV NFD+P + Y+HRIGRTGR G GKA + Sbjct: 587 DFKRGKMLILVATAVAARGLDIKNVSHVINFDLPKTIDEYVHRIGRTGRVGNRGKATSFF 646 Query: 350 -AKEDIKHIDAIEKLIEKKV----DWL 371 + D+ D + K++++ DWL Sbjct: 647 DSSTDMPLTDDLVKILKQASQPVPDWL 673 >gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum] gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum] Length = 451 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 217/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 ++DLGL + A + +P+ IQ + IP+ LQ DV G+A+TG+GKTA+F LP+L Sbjct: 21 WSDLGLVDVLCKACEQLKWAQPSKIQKEAIPVALQGKDVIGLAETGSGKTAAFALPILQS 80 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + R LIL PTRELA Q+++ E G N + A+++GG+ +Q L + Sbjct: 81 LLENPQRYF---ALILTPTRELAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAKK 137 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +LI TPGR+LDH K + ++ LV+DEADR+L+M F + I ++P R T Sbjct: 138 PHILIATPGRLLDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILKVIPRERHTF 197 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT +++K+ L++P ++EV+T T E ++ ++ ++ K L+ L + Sbjct: 198 LFSATMTKKVKKLQRACLRDPVKVEVSTKYQTVEKLQQYYIFIPVKF-KDVYLVHIL--N 254 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + +IFC+ N + L G + +HG + Q R+ L+ FK ++++ Sbjct: 255 EMAGNSFMIFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALTKFKAKNRSILIS 314 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ IE Sbjct: 315 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIE 374 Query: 362 KLIEKKV 368 +LI K++ Sbjct: 375 QLIGKQL 381 >gi|307258113|ref|ZP_07539865.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863476|gb|EFM95407.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 445 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 8 MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ + + + L++A + GG+ ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL ++ L NP +I+ + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + M+ I+F ++++V L +L K+G + G++ Q R + ++ K+G + + Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV +V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 366 KIKRYTEE 373 >gi|86148269|ref|ZP_01066565.1| ATP-dependent RNA helicase [Vibrio sp. MED222] gi|218710959|ref|YP_002418580.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32] gi|254797693|sp|B7VME9|RHLB_VIBSL RecName: Full=ATP-dependent RNA helicase rhlB gi|85833965|gb|EAQ52127.1| ATP-dependent RNA helicase [Vibrio sp. MED222] gi|218323978|emb|CAV20340.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32] Length = 436 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 220/383 (57%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P+V+ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K GR + PR +I+ PTRELA Q+ ++ + + + AL GG ++ Q Sbjct: 71 LLKTPEHEGR-KPNQPRAIIMAPTRELAIQIYNDADSLVASTGIKAALAYGGESYDKQLG 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+E GAD+LI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + NP+ + V T I+ Y K ALL Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELF--YPSNEHKMALL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R KIL F +G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ Sbjct: 307 VDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAI 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ IE+ IE + + D S+L Sbjct: 367 NLPPIEEYIEHAIPMSDYDASAL 389 >gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis] Length = 496 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 138/380 (36%), Positives = 222/380 (58%), Gaps = 7/380 (1%) Query: 7 GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG 66 G+ P + A + PT +QI+ IPL LQ DV G+A+TG+GKTA+F LP+L L + Sbjct: 68 GVVPVLCEACKQLNWTDPTKVQIEAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEH 127 Query: 67 RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R+ L+L PTRELA Q+A+ FE G + VA+++GG+ Q L + V+ Sbjct: 128 PQRLF---ALVLTPTRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVI 184 Query: 127 ICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 + TPGR++DH K + +++ LV+DEADR+LDM F + I ++P R+T LFSA Sbjct: 185 VATPGRLVDHLENTKGFSLRSLKYLVMDEADRILDMDFESEVNKILQVIPRERKTYLFSA 244 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245 TMT ++ K+ LQ+P ++EV++ T + ++ ++ ++ K C L+ L ++ Sbjct: 245 TMTKKVTKLQRASLQDPVKVEVSSKYQTVDKLQQHYIFIPQKF-KDCYLVYIL--NEMAG 301 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 K+ I+F + N + L GF+ +HG + Q R+ L+ FK +++A+D+A Sbjct: 302 KSCIVFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNKFKAKDRSILIATDVA 361 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 +RGLDIP V V NFD+P +++YIHR+GRT RAGR G + T V + D++ IE L+ Sbjct: 362 SRGLDIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRIEYLLG 421 Query: 366 KKVDWLNGDLSSLNPPLEKI 385 K++ + + LE++ Sbjct: 422 KQLPLFKTEEPEVLSLLERV 441 >gi|251793531|ref|YP_003008260.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus NJ8700] gi|247534927|gb|ACS98173.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus NJ8700] Length = 441 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 212/366 (57%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FAD L+P+++ A+ GY +PT IQ +T+P + DV G A TGTGKTA+F+LP + Sbjct: 7 FADFDLAPELLKAIQKKGYQRPTAIQQETLPAAMDGEDVLGSAPTGTGKTAAFLLPAIQH 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVA+ E+ L++A + GG+ ++ + + Sbjct: 67 LLDYPRRKPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNHGEIFNK 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + +EIL+ DEADRML MGF + I++ + +QTL Sbjct: 127 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTL 186 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ D L+ +E L P +I+ + I+ + + K LL + ++ Sbjct: 187 LFSATLEGDLLEDFAERTLNEPVKIDAEPSRRERKKIQQWYYHADSN-EHKFKLLARFIE 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ + GI+F ++++V L +L K+G + G + Q R + K G + ++V Sbjct: 246 -QEQVSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 304 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ++D++ARG+DI DV H+ NFD+P A+ Y+HRIGRT RAG+ G A + V D + + I Sbjct: 305 STDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGKI 364 Query: 361 EKLIEK 366 ++ ++ Sbjct: 365 KRYTQE 370 >gi|15227951|ref|NP_181780.1| DEAD box RNA helicase, putative [Arabidopsis thaliana] gi|108861890|sp|Q84W89|RH37_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 37 gi|4559339|gb|AAD23001.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana] gi|330255039|gb|AEC10133.1| DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana] Length = 633 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 145/362 (40%), Positives = 207/362 (57%), Gaps = 23/362 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP++L+ D+ AQTG+GKTA+F P+++ Sbjct: 161 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG 220 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + K + +R P +IL PTRELA+Q+ D +K+ + V + GG P Q Sbjct: 221 IMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQ 280 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG D+L+ TPGR+ D R ++ M I L +DEADRMLDMGF P I+ I + Sbjct: 281 LRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 340 Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQTLLFSAT E+Q+++ +FL N + V S+ + I + S K Sbjct: 341 MPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQ--RVEFVLDSDK 398 Query: 232 CALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 + L LL +Q +NGI +F K+ +L + L GF +IHG+ Q+ Sbjct: 399 RSHLMDLLHAQ--RENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQE 456 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G Sbjct: 457 REVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 516 Query: 344 KA 345 A Sbjct: 517 LA 518 >gi|149910890|ref|ZP_01899522.1| putative ATP-dependent RNA helicase [Moritella sp. PE36] gi|149806044|gb|EDM66027.1| putative ATP-dependent RNA helicase [Moritella sp. PE36] Length = 424 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 214/370 (57%), Gaps = 15/370 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +LGL ++ + + Y++PTPIQ + IP VL D+ A TG+GKTA+F LP+L Sbjct: 9 NFTELGLISPLLTRLTEMEYLQPTPIQAQAIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 68 Query: 62 ILEKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFE 113 L + ++ LIL PTRELA QVAD+ + Y + N + L GG+ Sbjct: 69 QLHTEKQLSDTSSKGNYVTGLILVPTRELAIQVADSIKSYAAHLNGAIKTLAVFGGVSAN 128 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + + +L Sbjct: 129 TQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTEELSALLAL 188 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKC 232 P +Q LLFSAT +++Q +++ L +P +E+ S+ A T ++ F T + K Sbjct: 189 TPKQKQILLFSATFPEQVQALTQELLNDP--VEIQLQSADASTLVQRVFTVTKGE---KT 243 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ALL L++ + + +IF N K + +L L K+G + HG+ Q +R++ L FK Sbjct: 244 ALLAHLIKRHE-WRQVLIFVNSKHSCNHLADKLAKRGITSQVFHGDKGQSARIRTLDGFK 302 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G + +++A+D+AARG+DI + V NFD+P +Y+HRIGR+GRAG G A +L+ E Sbjct: 303 AGQVHVLIATDIAARGIDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 362 Query: 353 DIKHIDAIEK 362 D H IEK Sbjct: 363 DYHHFSTIEK 372 >gi|143361556|sp|Q5QMN3|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20 Length = 494 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 138/392 (35%), Positives = 221/392 (56%), Gaps = 20/392 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D+G V+ + AG+V+PTPIQ + P+ L+ D+ GIA+TG+GKT +++LP + Sbjct: 92 EFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIV 151 Query: 62 ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 IL G P L+L PTRELA Q+ K+G + + + GG+P Q Sbjct: 152 HVNAQPILAPGDG----PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQ 207 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L++G +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 208 VRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIR 267 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQ-YSKKC 232 RQTL +SAT E+++++ NFL +P ++ + + A +H + + +Q Y+K Sbjct: 268 PDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLV 327 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL+ ++ + IF + KK + L G+ +IHG+ Q R +LS FK Sbjct: 328 NLLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 383 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G +M A+D+AARGLD+ DV +V N+D P E+Y+HRIGRTGRAG G A+T Sbjct: 384 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 443 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLN---PP 381 + + + ++E+ ++ +L+++ PP Sbjct: 444 NARFAKDLINILEEAGQKVSPELANMGRGAPP 475 >gi|238894460|ref|YP_002919194.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae NTUH-K2044] gi|238546776|dbj|BAH63127.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 457 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 219/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F+ L + P A L + GY+ TP+Q +P +L R DV A+TG+GKTA+F L +L Sbjct: 4 FSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILGRKDVRVQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R + +L+L TRELA QVA + + N+ + +L GG PF AQ L+ Sbjct: 64 HIDPARFETQ---SLVLCTTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH +G + ++ ++ LV+DEADRMLDMGF I + P RQT Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + +S +NP+ IE++T + IE F K ALLQ+LL Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEIDTVDAL-PAIEQQFFEV--SRHGKIALLQRLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 SQ + ++FCN K++ +C +L G S ++HG+++QR R + L F G+++++V Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382 +++ ++WL + PL Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378 >gi|321260432|ref|XP_003194936.1| ATP-dependent RNA helicase DBP2 (p68-like protein) [Cryptococcus gattii WM276] gi|317461408|gb|ADV23149.1| ATP-dependent RNA helicase DBP2 (p68-like protein), putative [Cryptococcus gattii WM276] Length = 537 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 141/376 (37%), Positives = 209/376 (55%), Gaps = 15/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G ++ + G+ P+ IQ + P+ L DV IA+TG+GKT SF LP + Sbjct: 111 FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDVVAIAETGSGKTISFCLPAMVH 170 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P LIL PTRELA Q+ K+G++ + + GG P Q Sbjct: 171 INAQPLLAPGDG----PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 226 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L+RG ++ + TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 227 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 286 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCAL 234 RQTLLFSAT E+Q+++ +FL + ++ + + TA +H V T + K+ L Sbjct: 287 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCT--DFDKRSKL 344 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L + +IF K+ +L L G+ AIHG+ Q R +L+ FK G Sbjct: 345 LSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSG 404 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A+RGLD+ D+G+V N+D PN E+YIHRIGRTGRAGR G ++T ++ Sbjct: 405 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 464 Query: 355 KHI-DAIEKLIEKKVD 369 K + ++ L E K D Sbjct: 465 KSARELVQILRESKAD 480 >gi|284006573|emb|CBA71834.1| ATP-dependent RNA helicase [Arsenophonus nasoniae] Length = 423 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 218/373 (58%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F D L PKV+ A+ G+ TPIQ T+P ++ DV G AQTGTGKT +F+ Sbjct: 6 FIDFALHPKVIEALNKNGFHNCTPIQASTLPFTVEGRDVAGQAQTGTGKTLAFLTSTFHY 65 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT +V PR LI+ PTRELA Q+ + ++ L + L GG ++ Q Sbjct: 66 LLTHPTNSERQVNQPRALIMAPTRELAVQIYTDAKELAAITGLKMGLAYGGDGYDEQLHV 125 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L+ G D+LI T GR++D+ +G + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 126 LQSGVDILIGTTGRLIDYAKQGHIHLGRIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 185 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R LLFSAT++ +Q+++ + P+ IEV T I E F Y +K LL Sbjct: 186 QRLNLLFSATLSYRVQELAFEQMNQPEYIEVEPQQKTGHRIKEELF---YPSNEEKMRLL 242 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ + IIF N K ++ L G V + G++ Q+ R++IL F +G Sbjct: 243 QTLIE-EEWPERCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGH 301 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 302 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYSL 361 Query: 356 HIDAIEKLIEKKV 368 ++ AIE+ I+ ++ Sbjct: 362 NLPAIEEYIQHQI 374 >gi|168052555|ref|XP_001778715.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669930|gb|EDQ56508.1| predicted protein [Physcomitrella patens subsp. patens] Length = 579 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 19/368 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L P + + Y KPTP+Q IP+ L D+ AQTG+GKTA+F P++ Sbjct: 132 FAEIDLGPALNENIRRCKYTKPTPVQKYAIPISLHGRDLMACAQTGSGKTAAFCFPIIAG 191 Query: 63 LEK----GR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + GR R +P LIL PTREL+ Q++D +K+ + V + GG P Q Sbjct: 192 IMRNTPPGRPRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPVHNQ 251 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +++ERG D+L+ TPGR+ D R ++ ++ + L +DEADRMLDMGF P I+ I + Sbjct: 252 LREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQMD 311 Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT E+Q+++ +FL N + V S+ + I + Q + K Sbjct: 312 MPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQ--RVEFVQDADK 369 Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 ++L L+ +Q + ++F KK +L L + GF IHG+ Q+ R Sbjct: 370 RSMLMDLIHAQSALAPPGQQTLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQERE 429 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 L +F+ G ++VA+D+AARGLDIP V HV NFD+P+ ++Y+HRIGRTGRAG+ G A Sbjct: 430 HALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVA 489 Query: 346 FTLVAKED 353 ++D Sbjct: 490 TAFFNEKD 497 >gi|91205891|ref|YP_538246.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C] gi|157826748|ref|YP_001495812.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389] gi|91069435|gb|ABE05157.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C] gi|157802052|gb|ABV78775.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389] Length = 411 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 138/358 (38%), Positives = 210/358 (58%), Gaps = 10/358 (2%) Query: 10 PKVVCAVLDAGYV-KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 P+ + L+A + +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ K + Sbjct: 7 PEELTTTLEAMKITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPVINAFIKDKT 66 Query: 69 RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128 TLIL PTRELA Q+ K ++ + A+LIGG P Q +L++ V+I Sbjct: 67 T-----TLILVPTRELATQICSTLNKVTTSFKINNAVLIGGEPMPKQFTQLKKNPKVIIG 121 Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188 TPGRI+DH NRG L ++ I I V+DE DRMLDMG ++ I +P RQ L+FSATM Sbjct: 122 TPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMP 181 Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248 + +S+ +L NP RI V + A I+ V K L +QL + ++ Sbjct: 182 KHIISLSQKYLNNPVRITVGATNKAAAEIKQESVH-ITDKEKFTELNKQLGDREGSV--- 237 Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308 IIF K++ L L + AIHG++ QR R +++ +F++ ++MVA+D+AARG Sbjct: 238 IIFVKTKRSADQLAKMLRYENHKAEAIHGDLSQRQRDRVILSFRKSNHRIMVATDVAARG 297 Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 LDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ AI++LI + Sbjct: 298 LDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAKGNALSFISPDDVIRWRAIDRLINQ 355 >gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans] gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans] Length = 525 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 147/384 (38%), Positives = 219/384 (57%), Gaps = 28/384 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A + Y KPTPIQ + IP L+ D+ G+AQTG+GKTA+F +P+L Sbjct: 107 FSELNLVPELIEACENLKYSKPTPIQAEAIPPALEGKDIIGLAQTGSGKTAAFAIPILNQ 166 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + +L PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 167 LWHDQQPYY---ACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMRK 223 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 ++I TPGR++DH K M ++ LV+DEADR+LDM F P + I ++P R T Sbjct: 224 PHIIIATPGRLMDHLENTKGFSMRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTT 283 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-------TYAQYSKKCA 233 LFSATMT ++ K+ L NP + V+T T +T+ + T+ Y Sbjct: 284 YLFSATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLIQTLMVVPGGLKNTFLIY----- 338 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 LL + L K I+F K N + LC+ LE FS A+HG+++Q R L Sbjct: 339 LLNEFLG-----KTAIVFTRTKANAERIATLCNLLE---FSATALHGDLNQNQRTGALDL 390 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV+ Sbjct: 391 FKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 450 Query: 351 KEDIKHIDAIEKLIEKKVDWLNGD 374 + D++ I IE ++ +K+ N D Sbjct: 451 QYDLELILRIEDVLGRKLPKENVD 474 >gi|143454263|sp|Q5N7W4|RH30_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 30 Length = 666 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 207/373 (55%), Gaps = 17/373 (4%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRA 68 A+ +G+V+PTPIQ + P+ L+ D+ GIAQTG+GKT S++LP L LE+G Sbjct: 265 AIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDG 324 Query: 69 RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128 P LIL PTRELA Q+ K+G + GG P Q + L RG +++I Sbjct: 325 ----PIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIA 380 Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188 TPGR++D G + + LV+DEADRMLDMGF P I+ I + + RQTL +SAT Sbjct: 381 TPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWP 440 Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCF--VATYAQYSKKCALLQQLLQSQDTM 245 E++ ++ FLQNP ++ + +P A +I+ ++ + +Y + LL L+ + Sbjct: 441 REVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSDLMDGSRIL 500 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 IF KK+ + L G+ +IHG+ Q R +L+ FK G +M A+D+A Sbjct: 501 ----IFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVA 556 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 ARGLD+ D+ V NFD P E+YIHRIGRTGRAG G AFT + K + K++ Sbjct: 557 ARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKILR 616 Query: 366 KKVDWLNGDLSSL 378 + +N L S+ Sbjct: 617 EAGQVVNPALESM 629 >gi|332028827|gb|EGI68856.1| ATP-dependent RNA helicase bel [Acromyrmex echinatior] Length = 704 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 155/395 (39%), Positives = 223/395 (56%), Gaps = 27/395 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F ++ L+ + ++ AGY KPTP+Q IP++++R DV AQTG+GKTA+F++P+L Sbjct: 215 FDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIERRDVMACAQTGSGKTAAFLVPILNQ 274 Query: 62 ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 I E G R + P L+L PTRELA Q+ D K+ + A++ GG Sbjct: 275 IYESGPRPPPPQANSSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGS 334 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 Q ++L+RG +L+ TPGR++D RGK+ ++N LV+DEADRMLDMGF P I+ I Sbjct: 335 NIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRFLVLDEADRMLDMGFEPQIRRI 394 Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 +P T RQTL+FSAT E+Q ++ +FL N + V ST+E I V + Sbjct: 395 VQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIV--WV 452 Query: 227 QYSKKCALLQQLLQ----SQDTMKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 + K + L LLQ S T ++ ++F KK L L G+ V +IHG+ Q Sbjct: 453 EEHDKRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRTQ 512 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 R R + L F+ G ++VA+ +AARGLDIP V HV NFD+P E Y+HRIGRTGR G Sbjct: 513 REREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGN 572 Query: 342 HGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WLN 372 G A + ++ + D + LIE + WL+ Sbjct: 573 LGLATSFFNHKNHNLVRDLVSLLIEANQELPPWLD 607 >gi|261332683|emb|CBH15678.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei gambiense DAL972] Length = 512 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 145/419 (34%), Positives = 246/419 (58%), Gaps = 12/419 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL +++ A +AG+ PT IQ+ TIP+V + D+ G+AQTG+GKT ++VLP++ Sbjct: 42 FKSLGLCEELIGACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLVNW 101 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +A+V L++ PTRELA QVA F G + L VA L+GG Q +L R Sbjct: 102 LLT-QAKVPYLSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACELSRR 160 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGR+ DH N K + + LV+DEAD+ML+M + I I +P RQTL Sbjct: 161 PHVVVGTPGRVKDHLNNTKGFQLVKLHALVLDEADKMLEMDYEKEINAILEHLPHNRQTL 220 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT++ ++ ++ L +P +EV+ ++T +T++ +V +A +++ L L + Sbjct: 221 LFSATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYV--FAPFAQMLPYLHLYL-T 277 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +++ + ++FC V + +L G + G +DQ++R L+ FKEG ++++V Sbjct: 278 RESGNHILVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVRILVC 337 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A RGLDIP V NF +P+R E+YIHR+GRT RAG GKA ++++ DI + +E Sbjct: 338 TDVAQRGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDIVLLQKVE 397 Query: 362 KLIEKKV-DW--LNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 K +W +GD++++ L++++ A+ ++ Q++ F+R + ++ + Sbjct: 398 ASTGVKCEEWPISDGDVAAV---LQRVEDAEQEAVKEMRESDQEAK-FEREARQLTTAR 452 >gi|71082870|ref|YP_265589.1| ATP-dependent RNA helicase [Candidatus Pelagibacter ubique HTCC1062] gi|71061983|gb|AAZ20986.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique HTCC1062] Length = 582 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 135/348 (38%), Positives = 207/348 (59%), Gaps = 13/348 (3%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMPRTLIL 78 + KPTPIQ IP+ L+ D+ G AQTGTGKT +F +P++ IL+K L++ Sbjct: 22 FTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPLINKLILDKNAF------ALVM 75 Query: 79 EPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137 PTRELA QV + N+ ALLIGG + Q ++L + +++ TPGRI DH Sbjct: 76 CPTRELATQVMAAIKSIISDKINIKTALLIGGEAMQKQLRQLGNRSRIIVGTPGRINDHL 135 Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 R L ++ + LV+DE DRMLDMGF P I+ I VP QTLLFSAT+ + ++SE Sbjct: 136 KRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVPKDHQTLLFSATLPQNIVRISER 195 Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257 +L P+RI + S I+ + + + +K L+ Q + + ++ ++F K+ Sbjct: 196 YLNEPQRISTGSTSVPIAKIKQETLQVFKE-NKYDQLVDQFIARKGSI---LVFVKTKRG 251 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 + L+++G S AIHG++ Q R +++++F++G ++++A+D+AARGLDIP + HV Sbjct: 252 ADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRILIATDVAARGLDIPLIQHV 311 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 NFD+P E+Y+HRIGRT RAG G A T + +D + I KLI+ Sbjct: 312 INFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWNEISKLID 359 >gi|77359468|ref|YP_339043.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis TAC125] gi|76874379|emb|CAI85600.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125] Length = 408 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 205/370 (55%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++ L K++ A+ GY PT IQ + IP LQ D+ A TGTGKTA+F++P + Sbjct: 1 MQFSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R R L++ PTRELA Q+ + E K NL + ++ GGI + + Sbjct: 61 QYLLDFPRRDPGFARVLVMTPTRELAYQIHEQCELLAKRTNLKIGVVTGGINYGTHKEIF 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+ D+LI TPGR++++ ++E+L+IDEADRMLDMGF + I RQ Sbjct: 121 EKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQ 180 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT+ D +++ +E L +P +E + I H +V Y K LL Sbjct: 181 CFLFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKI-HQWVHLADDYHHKLELLVNT 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L D K I+F ++ + L L + G + Q RMK + NF G ++ Sbjct: 240 LNGPDVTK-AIVFVKTRERLETLIGELTTNDVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ D+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV DI + Sbjct: 299 LVATDVAARGIDVADISHVINFDLPRTADIYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358 Query: 359 AIEKLIEKKV 368 IE+ IE+K+ Sbjct: 359 KIERYIEQKL 368 >gi|229826321|ref|ZP_04452390.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC 49176] gi|229789191|gb|EEP25305.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC 49176] Length = 522 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 217/362 (59%), Gaps = 7/362 (1%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 L +++ AV + GY + TPIQ + IP+ + D+ G AQTGTGKTA+F +P+L ++ G Sbjct: 3 LDERILKAVKELGYEEATPIQTEAIPVAITGRDILGQAQTGTGKTAAFSIPILNNIDSGN 62 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVL 126 ++ ++L PTRELA QV K + + + + + GG Q K L++GA ++ Sbjct: 63 KHLQ---AVVLCPTRELALQVCGEIRKLSRYMHGIKLVPVYGGQDIVKQIKSLKQGAQII 119 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 + TPGR++DH R + + ++I+V+DEAD MLDMGF I+ I + VP RQT+LFSAT Sbjct: 120 VGTPGRVMDHMRRKTVKFDQVKIMVLDEADEMLDMGFRDDIETILAEVPEERQTMLFSAT 179 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246 M + ++ + + + I++ T E IE + Y K +L ++L + + Sbjct: 180 MPKPILDITRKYQKKAQNIKIAKKELTVENIEQYYYEVRRNY--KDEILSRILDMYNP-E 236 Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306 I+FCN KK V + + L+ +G+ +HG++ Q+ R +++ NF+ G +++VA+D+AA Sbjct: 237 LSIVFCNTKKKVEEVANELQGRGYFAEGLHGDLKQQQRDRVMGNFRNGKTEILVATDVAA 296 Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 RG+D+ V V N+D+P E Y+HRIGRTGRAG+ G A + V+ +++ + I++ Sbjct: 297 RGIDVKGVDLVINYDLPQDDEYYVHRIGRTGRAGKAGLALSFVSGKEVYKLKEIQRYCHT 356 Query: 367 KV 368 K+ Sbjct: 357 KI 358 >gi|148702333|gb|EDL34280.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Mus musculus] Length = 1012 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 338 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 397 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 398 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 453 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 454 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 513 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 514 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 573 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L +L+++G ++ +HG++DQ R K++S+FK+ I Sbjct: 574 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 632 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 633 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 689 >gi|91762707|ref|ZP_01264672.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique HTCC1002] gi|91718509|gb|EAS85159.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique HTCC1002] Length = 582 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 135/348 (38%), Positives = 207/348 (59%), Gaps = 13/348 (3%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMPRTLIL 78 + KPTPIQ IP+ L+ D+ G AQTGTGKT +F +P++ IL+K L++ Sbjct: 22 FTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPLINKLILDKNAF------ALVM 75 Query: 79 EPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137 PTRELA QV + N+ ALLIGG + Q ++L + +++ TPGRI DH Sbjct: 76 CPTRELATQVMAAIKSIISDKINIKTALLIGGEAMQKQLRQLGNRSRIIVGTPGRINDHL 135 Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 R L ++ + LV+DE DRMLDMGF P I+ I VP QTLLFSAT+ + ++SE Sbjct: 136 KRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVPKDHQTLLFSATLPQNIVRISER 195 Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257 +L P+RI + S I+ + + + +K L+ Q + + ++ ++F K+ Sbjct: 196 YLNKPQRISTGSTSVPIAKIKQETLQVFKE-NKYDQLVDQFIARKGSI---LVFVKTKRG 251 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 + L+++G S AIHG++ Q R +++++F++G ++++A+D+AARGLDIP + HV Sbjct: 252 ADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRILIATDVAARGLDIPLIQHV 311 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 NFD+P E+Y+HRIGRT RAG G A T + +D + I KLI+ Sbjct: 312 INFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWNEISKLID 359 >gi|47121785|gb|AAT11555.1| vasa-like protein [Copidosoma floridanum] gi|47175561|gb|AAT12450.1| vasa protein [Copidosoma floridanum] Length = 708 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 210/361 (58%), Gaps = 17/361 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F + L +V + +GY PTPIQ IP+VL D+ G AQTG+GKTA+F++P++ Sbjct: 282 FDEANLRSLLVDNIKKSGYQIPTPIQKHGIPIVLAGRDLMGCAQTGSGKTAAFLIPIIHN 341 Query: 61 ------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 I + G PR LIL PTRELA Q+ D K+ K+ L L+ GG Sbjct: 342 LLLKPREINDMGSLSTVEPRALILAPTRELAIQIHDECRKFSKDSVLKCCLIYGGTAVGH 401 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI---- 170 Q K++ G D+L+ TPGR+ D RGK++ + IE LV+DEADRM+DMGFI ++ + Sbjct: 402 QLKQIFYGCDLLVATPGRLKDFVGRGKVVFSAIEYLVLDEADRMIDMGFIGDVEMVIRHE 461 Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230 T P RQTL+FSAT ++Q+++ FL N + V S IE F+ + S Sbjct: 462 TMTPPGERQTLMFSATFPRDIQELAVKFLNNYIFVAVGIVGSACSDIEQSFLEV--KKSD 519 Query: 231 KCALLQQLLQSQ---DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 K + L+++L+ + DT+K ++F +QK+ + L F +IHG+ QR R + Sbjct: 520 KRSKLKEILEEERNNDTLKGILVFVDQKRTADFIAAFLSDNNFPTTSIHGDRLQREREEA 579 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L++FK G + ++VA+ +AARGLDI +V V NFD+P + YIHRIGRTGR G GKA + Sbjct: 580 LNDFKSGRMCILVATAVAARGLDIKNVRFVINFDLPKEIDEYIHRIGRTGRVGNKGKAVS 639 Query: 348 L 348 Sbjct: 640 F 640 >gi|126303302|ref|XP_001379053.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27 (DEAD box protein 27) [Monodelphis domestica] Length = 796 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 139/363 (38%), Positives = 210/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 223 LTFQDMNLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 282 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + +T L +GG+ ++Q L Sbjct: 283 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSTVTTCLAVGGLDVKSQEAALR 342 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 343 AGPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIQMCSHHRQ 402 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 403 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSAL 462 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 463 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 522 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 523 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 582 Query: 360 IEK 362 I K Sbjct: 583 IVK 585 >gi|301169122|emb|CBW28719.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810] Length = 439 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens FB035-09AN] gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens FB035-09AN] Length = 565 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 153/424 (36%), Positives = 244/424 (57%), Gaps = 21/424 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L L+ ++ A+ D + K TPIQ IP +L+ DV G+AQTGTGKTA+++LP+L Sbjct: 1 MNFESLDLNDDILDALYDMRFEKCTPIQENCIPEILKGKDVLGVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116 + L G LI+ PTRELA Q+ + + N VA+ G G ++ + Sbjct: 61 SKLADGGYPEDAINCLIMSPTRELAQQIDQAIQGFSYYLNGVSCVAVYGGNDGNRYDQEL 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L GA+++I TPGR + H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 KSLSLGANLVIATPGRFISHMSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIQKNLPK 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 T QT++FSATM +++ +++ L NP I++ S AE I +A ++K +++ Sbjct: 181 TCQTIMFSATMPKKIEDLAQTLLTNPSVIKLAV-SKPAEKIHQ--LAYVCHETQKMGIIK 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + ++ + ++ IIF K+ V + SL ++ + +H ++ Q R +++ FK G I Sbjct: 238 DIFKAGN-LQRVIIFSGSKQKVKQIALSLNQKKINCGQMHSDLAQAERDEMMFKFKSGQI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI D+ V N+DVP+ AE+Y+HRIGRT RA R G A T V ++DI + Sbjct: 297 DVLVATDILARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRKGSAITFVNEDDIYY 356 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPL-EKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 IEK +EK+V+ + L L E +D N R+ K++ RR+K+ Sbjct: 357 FQQIEKFLEKEVEK-----AELPEGLGEGLDYVSRNKERR------KTSAKSRRRKD-RD 404 Query: 416 QKSH 419 Q+SH Sbjct: 405 QQSH 408 >gi|294665093|ref|ZP_06730397.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605135|gb|EFF48482.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 570 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L P ++ + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 11 FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q + Sbjct: 71 LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130 Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TRQTLLFSAT++ + +++ + P+++ V T S TA + + +K LL Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIY--FPSDEEKQTLL 248 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++G Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367 Query: 356 HIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 368 SLPDIEAYIEQKI 380 >gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906] gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906] Length = 457 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 9/370 (2%) Query: 3 FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FADL L + + + + GY+ TP+Q ++P +L DV A+TG+GKTA+F L Sbjct: 4 FADLHALPAEQLTNLNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAF---GLG 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +L++ A+ ++L+L PTRELA QVA+ + + N+ + L GG+PF Q L Sbjct: 61 LLQRIDAKQFNTQSLVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSIQRDSLI 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 A +++ TPGR+LDH N+ + + +++ LV+DEADRMLDMGF I +I S + RQT Sbjct: 121 HAAHIIVATPGRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSAQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT DE+ K+S Q+P IE+N+P +E F Y L Q L Sbjct: 181 LLFSATWPDEIAKISRKIQQDPVTIEINSPDELP-AVEQQF---YEISRYGKLGLLQKLL 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + ++FCN K++ ++ +L + SV A+HG+++Q+ R + L F G+ +++V Sbjct: 237 SHHQPNSCVVFCNTKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N+++ + E +IHRIGRT RAG G A + A E+I +A+ Sbjct: 297 ATDVAARGLDIKALEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIPRANAL 356 Query: 361 EKLIEKKVDW 370 E+++ K+DW Sbjct: 357 EEMLNIKLDW 366 >gi|220913250|ref|YP_002488559.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6] gi|219860128|gb|ACL40470.1| DEAD/DEAH box helicase domain protein [Arthrobacter chlorophenolicus A6] Length = 561 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 140/400 (35%), Positives = 219/400 (54%), Gaps = 9/400 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD + +V ++ DAG P PIQ T+P+ L HD+ G A+TGTGKT F +P L Sbjct: 39 FADYNVRQDIVDSLSDAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQR 98 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + G ++ +P + L++ PTRELA QVA + + N +A + GG +E Q Sbjct: 99 VVGRDDAGYDKLAVPGAPQALVIVPTRELAVQVASDLQAASTKRNARIATIYGGRAYEPQ 158 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L+ G +V++ TPGR++D + + L + N+ I+V+DEAD MLD+GF+P ++ I + P Sbjct: 159 VEALKNGVEVVVGTPGRLIDLYRQKHLSLKNVRIVVLDEADEMLDLGFLPDVETIIAGTP 218 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 RQTLLFSATM + ++ ++ P I P T Y +S K + Sbjct: 219 AVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKTEV 278 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + IIF K+ + L +GF+ AIHG++ Q +R + L F+ Sbjct: 279 VARILQARGRGRT-IIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNN 337 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ + Y+HR+GRTGRAG G A T V +D+ Sbjct: 338 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDV 397 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 I K + V SS E++DI + R Sbjct: 398 PRWALINKALGLNVPEPVETYSSSPHLYEELDIPEGTKGR 437 >gi|168185061|ref|ZP_02619725.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf] gi|226949024|ref|YP_002804115.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str. Kyoto] gi|237795191|ref|YP_002862743.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str. 657] gi|182671882|gb|EDT83843.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf] gi|226843804|gb|ACO86470.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str. Kyoto] gi|229262477|gb|ACQ53510.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str. 657] Length = 481 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 228/386 (59%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + LS +++ ++ GY P+ +Q + IPL+L+ D+ ++TG+GKTA+F +P Sbjct: 4 LGFENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I EK + P+ L+L PTRELA Q+ + L + G P Q ++L+ Sbjct: 62 -ICEKIELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR LDH R L + I+ V+DEAD ML+MGFI ++ + +P R T Sbjct: 121 QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ ++++ + + ++ NP+ I +N + T TI C+ + K +LLQ+++ Sbjct: 181 MLFSATIPEKIENLCKKYMNNPQNININPENITTGTINQCYYE--VEDKDKFSLLQKII- 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + N IIFCN ++ V + ++K+GF+ +HG ++Q+ R++ + FK+G Q +V Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ I ++ HV N+++P E+Y+HRIGRTGRAG+ G A T + ++ + I Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386 E IEK++ P LE++D Sbjct: 358 EDYIEKEIP------KRKEPSLEEVD 377 >gi|168180353|ref|ZP_02615017.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916] gi|182668688|gb|EDT80666.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916] Length = 481 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 228/386 (59%), Gaps = 12/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + LS +++ ++ GY P+ +Q + IPL+L+ D+ ++TG+GKTA+F +P Sbjct: 4 LGFENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I EK + P+ L+L PTRELA Q+ + L + G P Q ++L+ Sbjct: 62 -ICEKIELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR LDH R L + I+ V+DEAD ML+MGFI ++ + +P R T Sbjct: 121 QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ ++++ + + ++ NP+ I +N + T TI C+ + K +LLQ+++ Sbjct: 181 MLFSATIPEKIENLCKKYMNNPQNININPENITTGTINQCYYE--VEDKDKFSLLQKII- 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + N IIFCN ++ V + ++K+GF+ +HG ++Q+ R++ + FK+G Q +V Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ I ++ HV N+++P E+Y+HRIGRTGRAG+ G A T + ++ + I Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKID 386 E IEK++ P LE++D Sbjct: 358 EDYIEKEIP------KRKEPSLEEVD 377 >gi|88704045|ref|ZP_01101760.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71] gi|88701872|gb|EAQ98976.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71] Length = 427 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 216/373 (57%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L P ++ + + G+ +PIQ + +P LQ HD G AQTGTGKTA+F++ + Sbjct: 46 FHDLDLHPTLMHGIAEIGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFDD 105 Query: 63 LEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K G + PR L++ PTREL Q+A + E GK+ L LIGG+ ++ Q + Sbjct: 106 LLKHPHEGERFLGEPRALVIAPTRELVMQIAADAEDLGKHTGLNTCTLIGGMDYQKQLNQ 165 Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L R D+++ TPGR++D R L+++ +E+LV+DEADRMLDMGFIP ++ I P Sbjct: 166 LGREVVDLVVATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHK 225 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T ++ +S+ + + IE+ ++++ A ++ +L Sbjct: 226 DYRQTLLFSATFTQDIINLSQQWTTDAITIEIEPDHVATDSVDQRIY--LASSEERFRIL 283 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL+S D + I+F N++ V L L K + + G I Q R K L FK+G Sbjct: 284 VNLLRSDDA-SSVIVFANRRDQVRRLFERLRKASITCGMLSGEIAQAKRTKTLDQFKKGE 342 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+A RG+ + V HV N+++P E+Y+HRIGRTGRAG G + + +++D Sbjct: 343 ISVLVATDVAGRGIHVDGVTHVVNYNLPEDPEDYVHRIGRTGRAGASGTSISFASEDDAF 402 Query: 356 HIDAIEKLIEKKV 368 + +E L+ + V Sbjct: 403 LLPDLEALLGEPV 415 >gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] Length = 598 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 142/355 (40%), Positives = 214/355 (60%), Gaps = 19/355 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G+ P++V A+ +AG + IQ T+PL + D+ G A+TG GKT F +P+L Sbjct: 76 FASFGVKPEIVKALGEAGIERTFAIQELTLPLAMAGDDLIGQARTGMGKTLGFGVPLLH- 134 Query: 63 LEKGRARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 RV++P + L++ PTREL QVA++ + GK+ + + GG P+E Q + Sbjct: 135 ------RVQVPGDGTPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIE 188 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L +G DV+I TPGR+LD + L++ + LV+DEAD MLD+GF+P I+ I +VP Sbjct: 189 ALRKGIDVVIGTPGRLLDLAEQQHLVLGKVRGLVLDEADEMLDLGFLPDIERILRMVPDE 248 Query: 178 RQTLLFSATMTDELQKVSENFLQNPK--RIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 RQT+LFSATM + ++ FL+ P R E N S+ E FV Y +S K + Sbjct: 249 RQTMLFSATMPGPIITLARTFLRQPTHIRAEENDASAIHERTTQ-FV--YRAHSMDKPEV 305 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++D +IF K+ + L ++GF+ A+HG++ Q +R + L F+ G Sbjct: 306 IARVLQAEDRGLT-MIFSRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSG 364 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 + ++VA+D+AARG+DI DV HV N+ P+ + Y+HRIGRTGRAGR G A TLV Sbjct: 365 KVDVLVATDVAARGIDIDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGVAVTLV 419 >gi|256088378|ref|XP_002580316.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni] gi|238665869|emb|CAZ36555.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni] Length = 730 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +A++ ++ ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 302 WAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNW 361 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +++ R+ P +I+ PTRELA Q+ + K+G+ + LIGG+ E Q Sbjct: 362 IQRLPKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQA 421 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL GA+++I TPGR+ D +++N +V+DEAD+M+DMGF P + NI + +P Sbjct: 422 LKLRMGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPV 481 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++++ ++L+ P + + + Sbjct: 482 TNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAG 541 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E +E V ++ K+ LL+ L D IIF NQKK L LEK G+S Sbjct: 542 KPTERVEQ-IVYMVSEQEKRRKLLEILAAGLDP--PVIIFVNQKKGADVLAKGLEKLGYS 598 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 +HG Q R L++ K G +++VA+D+A RG+DI DV V N+D+ + Y+H Sbjct: 599 AVVLHGGKGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVH 658 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG+ G A +L+ KED Sbjct: 659 RIGRTGRAGKSGIAISLLTKED 680 >gi|148825298|ref|YP_001290051.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittEE] gi|148715458|gb|ABQ97668.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE] Length = 439 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|32035479|ref|ZP_00135436.1| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209462|ref|YP_001054687.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae L20] gi|303250442|ref|ZP_07336639.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251483|ref|ZP_07533390.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|126098254|gb|ABN75082.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302650430|gb|EFL80589.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860947|gb|EFM92953.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 445 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P+++ A+ GY +PT +Q +T+P L D+ G A TGTGKTA+F+LP + Sbjct: 8 MTFEELDLAPQLLKALNKKGYKRPTSVQAETVPHALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ + + + L++A + GG+ ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL ++ L NP +I+ + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + M+ I+F ++++V L +L K+G + G++ Q R + ++ K+G + + Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV +V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 366 KIKRYTEE 373 >gi|256088376|ref|XP_002580315.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni] gi|238665868|emb|CAZ36554.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni] Length = 793 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +A++ ++ ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 365 WAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNW 424 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +++ R+ P +I+ PTRELA Q+ + K+G+ + LIGG+ E Q Sbjct: 425 IQRLPKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQA 484 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL GA+++I TPGR+ D +++N +V+DEAD+M+DMGF P + NI + +P Sbjct: 485 LKLRMGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPV 544 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++++ ++L+ P + + + Sbjct: 545 TNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAG 604 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E +E V ++ K+ LL+ L D IIF NQKK L LEK G+S Sbjct: 605 KPTERVEQ-IVYMVSEQEKRRKLLEILAAGLDP--PVIIFVNQKKGADVLAKGLEKLGYS 661 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 +HG Q R L++ K G +++VA+D+A RG+DI DV V N+D+ + Y+H Sbjct: 662 AVVLHGGKGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVH 721 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG+ G A +L+ KED Sbjct: 722 RIGRTGRAGKSGIAISLLTKED 743 >gi|119178046|ref|XP_001240731.1| conserved hypothetical protein [Coccidioides immitis RS] gi|118575172|sp|Q1DP69|DBP2_COCIM RecName: Full=ATP-dependent RNA helicase DBP2 Length = 542 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 209/373 (56%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPTPIQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 127 FDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 187 INAQPLLGPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 242 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 243 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 302 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E+++++ +FL + ++ + + +A V + + K+ ++ Sbjct: 303 DRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIN 362 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + D K+ I IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 363 HLERIMDDKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 422 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A TL ++ K Sbjct: 423 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAK 482 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 483 QARDLVNILTESK 495 >gi|21244553|ref|NP_644135.1| ATP-dependent RNA helicase RhlB [Xanthomonas axonopodis pv. citri str. 306] gi|32363346|sp|Q8PFZ3|RHLB_XANAC RecName: Full=ATP-dependent RNA helicase rhlB gi|21110227|gb|AAM38671.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 571 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L P ++ + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 11 FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q + Sbjct: 71 LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130 Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TRQTLLFSAT++ + +++ + P+++ V T S TA + + +K LL Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIY--FPSDEEKQTLL 248 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++G Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367 Query: 356 HIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 368 SLPDIEAYIEQKI 380 >gi|307251282|ref|ZP_07533202.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856680|gb|EFM88816.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 445 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+P+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 8 MTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ + + + L++A + GG+ ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL ++ L NP +I+ + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + + M+ I+F ++++V L +L K+G + G++ Q R + ++ K+G + + Sbjct: 247 ISTME-MEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV +V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVATDVAARGIDINDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 366 KIKRYTEE 373 >gi|302188635|ref|ZP_07265308.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae 642] Length = 445 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ R +IL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+ N G L + ++E+LV+DEADRMLDMGF ++ + QT+ Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L++P+ ++VN+ S A H + K+ L L Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T K IIF N K L L + +HG+ DQ+ R + K+G ++MV Sbjct: 239 ANETYKKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P ++Y+HR+GRTGRAG G A +L+ D + ++ Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358 Query: 361 EKLIEKKVD 369 E+ +++ + Sbjct: 359 ERYLKQSFE 367 >gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320] gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320] Length = 457 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 222/370 (60%), Gaps = 9/370 (2%) Query: 3 FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FADL L + + + + GY+ TP+Q ++P +L DV A+TG+GKTA+F L Sbjct: 4 FADLHALPAEQLTNLNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAF---GLG 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +L++ A+ ++L+L PTRELA QVA+ + + N+ + L GG+PF Q L Sbjct: 61 LLQRIDAKQFNTQSLVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSIQRDSLI 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 A +++ TPGR+LDH N+ + + +++ LV+DEADRMLDMGF I +I S + RQT Sbjct: 121 HAAHIIVATPGRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSTQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT DE+ K+S Q+P IE+N+P +E F Y L Q L Sbjct: 181 LLFSATWPDEIAKISRKIQQDPVTIEINSPDELP-AVEQQF---YEISRYGKLGLLQKLL 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + ++FCN K++ ++ +L + SV A+HG+++Q+ R + L F G+ +++V Sbjct: 237 SHHQPNSCVVFCNTKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N+++ + E +IHRIGRT RAG G A + A E+I +A+ Sbjct: 297 ATDVAARGLDIKALEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIPRANAL 356 Query: 361 EKLIEKKVDW 370 E+++ K+DW Sbjct: 357 EEMLNIKLDW 366 >gi|56784388|dbj|BAD82427.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group] gi|56785381|dbj|BAD82339.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group] gi|222619731|gb|EEE55863.1| hypothetical protein OsJ_04500 [Oryza sativa Japonica Group] Length = 571 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 207/373 (55%), Gaps = 17/373 (4%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRA 68 A+ +G+V+PTPIQ + P+ L+ D+ GIAQTG+GKT S++LP L LE+G Sbjct: 170 AIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDG 229 Query: 69 RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128 P LIL PTRELA Q+ K+G + GG P Q + L RG +++I Sbjct: 230 ----PIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIA 285 Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188 TPGR++D G + + LV+DEADRMLDMGF P I+ I + + RQTL +SAT Sbjct: 286 TPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWP 345 Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCF--VATYAQYSKKCALLQQLLQSQDTM 245 E++ ++ FLQNP ++ + +P A +I+ ++ + +Y + LL L+ + Sbjct: 346 REVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSDLMDGSRIL 405 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 IF KK+ + L G+ +IHG+ Q R +L+ FK G +M A+D+A Sbjct: 406 ----IFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVA 461 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 ARGLD+ D+ V NFD P E+YIHRIGRTGRAG G AFT + K + K++ Sbjct: 462 ARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKILR 521 Query: 366 KKVDWLNGDLSSL 378 + +N L S+ Sbjct: 522 EAGQVVNPALESM 534 >gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae] gi|187031542|emb|CAP29606.1| hypothetical protein CBG_10097 [Caenorhabditis briggsae AF16] Length = 486 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 139/412 (33%), Positives = 235/412 (57%), Gaps = 9/412 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA+LG+S + A L G+ KP+ IQ +P L+ DV G+A+TG+GKT +F +P+L + Sbjct: 46 FAELGVSQPLCDACLRLGWTKPSKIQQAALPHALEGKDVIGLAETGSGKTGAFAIPVLQS 105 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ +A L+L PTRELA Q+ FE G L VA+++GG+ AQ L R Sbjct: 106 LLDHPQAFF----CLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALAR 161 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR++DH K + ++ L++DEADR+L+M F + I ++P R+T Sbjct: 162 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRT 221 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++ K+ L++P R+ ++T T + ++ ++ +Y K+ L+ L Sbjct: 222 YLFSATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFIPNKY-KETYLV--YLL 278 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + I+FC + + L + G +HG + Q R+ L+ FK +++V Sbjct: 279 NEHAGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARGLDIP V V N+D+P+++++Y+HR+GRT RAGR G A T+V + D++ I Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAYQKI 398 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 E + KK+D + + +E+ A N + + +K +R++N Sbjct: 399 EANLGKKLDEYKCVENEVMVLVERTQEAMENAKVEMKEMDEKRKSGKKRRQN 450 >gi|237806841|ref|YP_002891281.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis DSM 9187] gi|237499102|gb|ACQ91695.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 469 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 145/376 (38%), Positives = 217/376 (57%), Gaps = 7/376 (1%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 L L P ++ + GY + TPIQ +++P VLQ DV A+TG+GKTA+F L +L L+ Sbjct: 18 LALQPALLENLTALGYSEMTPIQAQSLPAVLQGKDVLAQAKTGSGKTAAFALGLLQGLDV 77 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGAD 124 V+ L+L PTRELA QVA + + N+ V L GG+P Q LE+GA Sbjct: 78 KSLNVQ---GLVLCPTRELADQVAGEIRRLARLIPNVKVLTLCGGMPIGPQFSSLEQGAH 134 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 +++ TPGR+ H ++ L + ++ V+DEADRMLDMGF ++ I + P RQTLLFS Sbjct: 135 IVVGTPGRVQKHLDKESLSLAALKTWVLDEADRMLDMGFADAMREIAKVCPRQRQTLLFS 194 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244 AT +++Q++S F +NP + V + S + IE F Q +K ALL+ L Q Sbjct: 195 ATYPEDIQRLSTEFQRNPLSVRVESTHSAVQ-IEQRFFELPNQEAKFPALLKLLQHYQP- 252 Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304 ++ +IFCN K + +L QG+S A++G+++QR R +++ F + ++VA+D+ Sbjct: 253 -RSTVIFCNMKHQTQQVADALSAQGYSALALNGDLEQRERDQVVVRFSNQSCAILVATDV 311 Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 AARGLDI ++ V N+D+ E ++HRIGRTGRAG+ G A TL + IE Sbjct: 312 AARGLDIKELQAVVNYDLTPDPEIHVHRIGRTGRAGQTGLALTLTTASQTNRVLQIEDYQ 371 Query: 365 EKKVDWLNGDLSSLNP 380 + + W N D NP Sbjct: 372 QSQAVWGNLDELKKNP 387 >gi|238061200|ref|ZP_04605909.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] gi|237883011|gb|EEP71839.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] Length = 557 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 209/363 (57%), Gaps = 2/363 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+LG P+ V A+ +AG + IQ IP+ L+ D+ G A TGTGKT F +P+L Sbjct: 53 FAELGARPETVEALAEAGITRAFAIQEYAIPIALRGVDMIGQAPTGTGKTLGFGVPLLER 112 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + +P+ L++ PTREL QVA + G+ + V + GG+ +E Q L + Sbjct: 113 VFAPAEGGDGVPQALVVVPTRELGIQVAKDLAAAGRTRGVRVLPIYGGVAYEPQIDALRK 172 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++L+ TPGR++D + L ++ + LV+DEADRMLD+GF+ ++ I +++P RQT+ Sbjct: 173 GVEILVGTPGRLMDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTM 232 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D + +S FL+ P I + T + + + K ++ ++LQ+ Sbjct: 233 LFSATMPDPIVTLSRRFLRRPMTIHAGHTAETGPSPQTEQLVYRTHSMNKIEIVARILQA 292 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + +IF K+ + L+ +GF+V A+HG++ Q +R + L F+ G I ++VA Sbjct: 293 EGRGLT-MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDILVA 351 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ V HV N+D P + Y HRIGRTGRAG G A T V +D+ I+ Sbjct: 352 TDVAARGLDVSGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRIID 411 Query: 362 KLI 364 K + Sbjct: 412 KTL 414 >gi|89093208|ref|ZP_01166158.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92] gi|89082504|gb|EAR61726.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92] Length = 497 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 145/394 (36%), Positives = 227/394 (57%), Gaps = 11/394 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L V+ A+ D + T IQ +TIP L D+ G AQTGTGKTA+F+L ++ Sbjct: 54 MRFHDFNLPDDVLHAISDLKFEYCTGIQAETIPAALAGKDIIGKAQTGTGKTAAFLLGII 113 Query: 61 TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 T L + + R+ PR L++ PTRELA Q+A++ + K +L V L+GG+ +E Q Sbjct: 114 TDLIDYPLEEKPRLGEPRALVVAPTRELALQIAEDAKGLAKYTDLHVVSLVGGMDYEKQR 173 Query: 117 KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +KL++ D+L+ TPGR++D NR + + N+E+LV+DEADRML MGFIP ++ I P Sbjct: 174 QKLKKKPVDILVATPGRLIDFVNRKDVDLWNVEVLVLDEADRMLSMGFIPDVRTIVRNTP 233 Query: 176 ---FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 RQTLL+SAT TD++ ++E + + +IE+ T + + + +K Sbjct: 234 RKGADRQTLLYSATFTDDILNLAEQWTLDAVKIEIAPEIKTTDNVTQTVYLVSGE--EKY 291 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL+ + +D + I+F N++ L L K G + G I Q+ R++ L +F+ Sbjct: 292 RLLRNYM-DKDHAEKVIVFGNRRDETRRLADRLCKDGIRAALMSGEIPQQKRVRTLEDFR 350 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G IQ++VA+D+A RG+ I V HVFN+ +P ++Y+HRIGRTGRAG G + ++ Sbjct: 351 SGKIQVLVATDVAGRGIHIDGVTHVFNYQLPEDPDDYVHRIGRTGRAGATGASICFACED 410 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386 D I IE K++ ++ + L P K++ Sbjct: 411 DSFLIPEIEAETGVKLECVHPEAELLLEPKAKVN 444 >gi|171910495|ref|ZP_02925965.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM 4136] Length = 673 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 224/361 (62%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL+P ++ A+ G+ +P+PIQ K IP L+ DV G +QTG+GKT +F +P + Sbjct: 47 FTELGLAPDILKAMTALGFEQPSPIQEKGIPPALEGRDVVGQSQTGSGKTMAFAIP---V 103 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLER 121 ++K R R R LI+ PTRELA QV + K + AL I GG ++ Q + L Sbjct: 104 VQKIDPRDRGVRALIMCPTRELAMQVCEEVAKLTVHKPGLKALPIYGGATYDRQIRGLRD 163 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRILD RG L ++ ++ LV DEAD MLDMGF I ++ +LVP RQTL Sbjct: 164 GAQIVVGTPGRILDFLERGMLRLDALQTLVFDEADEMLDMGFREDIDSLMALVPENRQTL 223 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSAT+ ++ + E++ +N I + + T TIE + ++ K +L +LL Sbjct: 224 FFSATLAGPIRHLVESYTKNAALITIEHKALTVPTIEQRYYEVNSR--SKIEVLCRLLDI 281 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + I+F N KK V ++ +L + + V +HG+++Q R +++ NF+ G ++++ A Sbjct: 282 ENP-RLAIVFANTKKAVDDITDALMARSYGVDRLHGDLNQTMRDRVMKNFRAGNVEVLAA 340 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ DV V NFD+P E+Y+HRIGRTGRAGR GKA +LV+ DI + I+ Sbjct: 341 TDVAARGLDVDDVDLVVNFDLPYDEEDYVHRIGRTGRAGRSGKAMSLVSGRDIFLLQRIQ 400 Query: 362 K 362 + Sbjct: 401 R 401 >gi|297824215|ref|XP_002879990.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp. lyrata] gi|297325829|gb|EFH56249.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp. lyrata] Length = 627 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 145/362 (40%), Positives = 207/362 (57%), Gaps = 23/362 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP++L+ D+ AQTG+GKTA+F P+++ Sbjct: 159 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG 218 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + K + +R P +IL PTRELA+Q+ D +K+ + V + GG P Q Sbjct: 219 IMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQ 278 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG D+L+ TPGR+ D R ++ M I L +DEADRMLDMGF P I+ I + Sbjct: 279 LRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 338 Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQTLLFSAT E+Q+++ +FL N + V S+ + I + S K Sbjct: 339 MPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQ--RVEFVLDSDK 396 Query: 232 CALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 + L LL +Q +NGI +F K+ +L + L GF +IHG+ Q+ Sbjct: 397 RSHLMDLLHAQ--RENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQE 454 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G Sbjct: 455 REVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 514 Query: 344 KA 345 A Sbjct: 515 LA 516 >gi|255013213|ref|ZP_05285339.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7] Length = 587 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 138/352 (39%), Positives = 209/352 (59%), Gaps = 8/352 (2%) Query: 20 GYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78 GY P P+Q + IP +L + +DV +AQTGTGKTA++ LP IL+K P+ LIL Sbjct: 2 GYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP---ILQKINVSQYQPQALIL 58 Query: 79 EPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137 PTREL Q+AD+ Y K NL V + GG E+Q K L+RG V++ TPGR++D Sbjct: 59 CPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLKRGVHVVVATPGRLIDLM 118 Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 NR + ++N++ +++DEAD ML+MGF I I + +P R LLFSATM E+ +++ Sbjct: 119 NRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNMLLFSATMPKEIASITKK 178 Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257 ++++PK I + + + I + AQ K L++L + GIIFC +K Sbjct: 179 YMKDPKEIVIGRKNEGNKNIRDIYYMVRAQ--DKYLALKRLADYYPNIY-GIIFCRTRKE 235 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 + L + G++ ++HG + Q R ++ F+ IQL+VA+D+AARGLD+ D+ HV Sbjct: 236 TQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLVATDVAARGLDVDDLTHV 295 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 N+ +P+ E+Y HR GRTGRAG+ G A ++ + I IE++I KK D Sbjct: 296 INYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREIERIINKKFD 347 >gi|54294961|ref|YP_127376.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Lens] gi|53754793|emb|CAH16280.1| hypothetical protein lpl2040 [Legionella pneumophila str. Lens] Length = 468 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L +++ ++ + Y TPIQ++++P++L+ D+ A+TG+GKTA+F L +L Sbjct: 11 LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLL 70 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ V+ L+L PTRELA QV+ + N+ + L GGIP + Q L Sbjct: 71 NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDSL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA +++ TPGRIL H L ++ ++ L++DEADRMLDMGF I+NI S+ P RQ Sbjct: 128 RHGAHIIVGTPGRILKHLKNTSLDLSQVKALILDEADRMLDMGFFDDIKNIISVCPKQRQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +E++++S+ F+++PK + V TP + +H + +++++K LL+ LL Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFY--EVSRHAQKFPLLKSLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + +IFCN K+ + + L +GFS A++G+++Q R + F + ++ Sbjct: 246 LHYQPV-SVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANKSCSIL 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI ++ V NFD+ + +IHRIGRTGRAG G A ++V D + I A Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364 Query: 360 IEKLIEKKVDWLN 372 IE + W N Sbjct: 365 IEDNYPHPIHWGN 377 >gi|120554694|ref|YP_959045.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter aquaeolei VT8] gi|120324543|gb|ABM18858.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8] Length = 423 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 143/396 (36%), Positives = 230/396 (58%), Gaps = 15/396 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+DL L +++ A+ G+ TPIQ +T+P L D+ G AQTGTGKTA+F++ + Sbjct: 11 LRFSDLNLDKRLLDAISKIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAI 70 Query: 61 -----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 T +++ PR L L PTRELA Q+A + E+ V ++GG+ ++ Q Sbjct: 71 QSLLETPIDEKERFASEPRVLALAPTRELAMQIAKDAEQLCHYTGHNVVTVVGGMNYDKQ 130 Query: 116 NKKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SL 173 ++L+ D+L+ TPGR++D + ++ ++IL++DEADRMLDMGFIP ++ I Sbjct: 131 REQLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKC 190 Query: 174 VPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 P RQTLLFSAT ++ ++ + +N + +E+ TAE +E ++K Sbjct: 191 TPKDERQTLLFSATFNQDVLNLASMWTRNAEFVEIEPEQKTAERVEQTVF--LVSDNEKL 248 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 +L L+ + K I+F N++ +L L+ QG V + G I Q R+K L FK Sbjct: 249 PVLVNYLKRPEVEK-AIVFANRRDQCRDLEEDLKNQGVKVALMSGEIAQNKRLKTLDQFK 307 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 +G IQ++VA+D+A RG+ + V HVFN+++P+ AE+Y+HRIGRTGRAG+ G + + +E Sbjct: 308 KGQIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKTGVSVSFAGEE 367 Query: 353 DIKHIDAIEKLIEKKVDWLNGD----LSSLNPPLEK 384 D + IEK I +K+ D ++ NPP+ + Sbjct: 368 DAFALPEIEKYISQKLKTAVPDENLTVAMDNPPITR 403 >gi|325953815|ref|YP_004237475.1| DEAD/DEAH box helicase [Weeksella virosa DSM 16922] gi|323436433|gb|ADX66897.1| DEAD/DEAH box helicase domain protein [Weeksella virosa DSM 16922] Length = 586 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 215/371 (57%), Gaps = 8/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPM 59 M F DLGL P+++ AV D G+V P+PIQ K IP +L DV +AQTGTGKTA+F LP+ Sbjct: 1 MTFKDLGLQPEILSAVEDMGFVSPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLPI 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 L L+ + V+ +IL PTREL Q+A E + + + + + GG Q K Sbjct: 61 LNQLDLSQKNVQ---AIILCPTRELCLQIAKEMESFAAHMQGVKIQAVYGGADIVKQIKG 117 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L +++ TPGR +D R L +NNI V+DEAD ML+MGF I NI P + Sbjct: 118 LRDNPQIVVGTPGRTMDLIKRNALKINNITWTVLDEADEMLNMGFRDEIDNILETTPEEK 177 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSATM E+++++ ++ P I V+ + ++ IEH + A S + L+++ Sbjct: 178 QTLLFSATMPREVRRIAAEYMFKPVEIAVSKVNMASKNIEHQYYMVRA--SDRYLALKRI 235 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ GI+FC ++ + L + G++ A+HG++ Q R ++ F++ IQ+ Sbjct: 236 ADYYPSIY-GIVFCKTRRETKEVADRLMQDGYNADALHGDLSQAQRDFVMDKFRKKNIQI 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ ++ HV N+ +P+ E Y+HR GRTGRAG G + + + + + Sbjct: 295 LVATDVAARGIDVNELTHVINYSLPDDPEVYVHRSGRTGRAGNKGISIIIAHSREGRKVK 354 Query: 359 AIEKLIEKKVD 369 +EK I ++ Sbjct: 355 DVEKFISAPIE 365 >gi|120436503|ref|YP_862189.1| ATP-dependent RNA helicase [Gramella forsetii KT0803] gi|117578653|emb|CAL67122.1| RhlE-like DEAD box family ATP-dependent RNA helicase [Gramella forsetii KT0803] Length = 455 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 217/369 (58%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DL L+ + A+ D + PTPIQ + ++ DV GIAQTGTGKT +++LP+L Sbjct: 9 LSFQDLNLNTPLRNALEDLNFQTPTPIQEQAFSSIMSGRDVVGIAQTGTGKTFAYLLPLL 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ + PR LI+ PTREL QV + EK K NL VA + GG+ Q++ L Sbjct: 69 RMLKYSEQK--NPRILIMVPTRELVVQVVEEIEKLAKYINLRVAGVYGGVNINTQHQDLM 126 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ TP R+ D R + + +I+ VIDE D MLD+GF + NI L+P RQ+ Sbjct: 127 QGLDIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPKNRQS 186 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 ++FSATMT+ ++++ + + P++I V + E I+ Y+ K LL+ LL Sbjct: 187 IMFSATMTETVEEMIDTNFKAPEKISVAVSGTPLENIDQRGYKIPNFYT-KANLLKHLLA 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +T + +IF K+ L +L E+ +H Q R+K + +F EG +++ Sbjct: 246 DTETYQKVLIFIGDKRIADRLYENLGEEFPGDTSLVHTGKSQNYRLKSVGDFDEGLSRIL 305 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+ ARGLDI +V HV NFD P ENY+HRIGRTGRA + G++ + + +++DA Sbjct: 306 IATDVMARGLDIENVSHVVNFDTPQYPENYMHRIGRTGRAEKKGQSLLFTTEAEQEYLDA 365 Query: 360 IEKLIEKKV 368 IE+L++ +V Sbjct: 366 IEELMQTEV 374 >gi|328884859|emb|CCA58098.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712] Length = 874 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 132/350 (37%), Positives = 208/350 (59%), Gaps = 20/350 (5%) Query: 31 TIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRAR----VRMPRTLILEP 80 T+P+ L DV G A+TGTGKT F LP+L T +E GRA+ P+ L++ P Sbjct: 2 TLPVALSGTDVIGQAKTGTGKTLGFGLPILERVTVPTDVEAGRAKPEQLTDAPQALVVVP 61 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 TREL QV ++ GK N+ V + GG +E Q + L++G DV++ TPGR+LD + Sbjct: 62 TRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQR 121 Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200 KL ++++++LV+DEAD MLD+GF+P ++ I +++P RQT+LFSATM + ++ ++ Sbjct: 122 KLDLSHVKVLVLDEADEMLDLGFLPDVEKIINMLPAKRQTMLFSATMPGAVIGLARRYMS 181 Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNG----IIFCNQK 255 P I +P T+ + Y A K ++ ++LQ+ NG +IFC K Sbjct: 182 QPTHIRATSPDGEGATVANIKQHVYRAHNMDKPEMVSRILQA-----NGRGLAMIFCRTK 236 Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315 + ++ LE++GF+ A+HG++ Q +R + L F+ G + ++V +D+AARG+D+ V Sbjct: 237 RTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVT 296 Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 HV N+ P + ++HR+GRTGRAG G A TLV +DI I K +E Sbjct: 297 HVINYQSPEDEKTFLHRVGRTGRAGNKGTAVTLVDWDDIPRWQLINKALE 346 >gi|146305516|ref|YP_001185981.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp] gi|145573717|gb|ABP83249.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp] Length = 458 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 146/392 (37%), Positives = 217/392 (55%), Gaps = 13/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L LS + + GY + TPIQ ++PL+L+ D+ A+TG+GKTA+F + +L Sbjct: 6 FASLPLSAAMQANLAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHP 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + L+L PTRELA QVA + + N+ V L GG+PF Q LE Sbjct: 66 LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI +H +G L ++ + LV+DEADRMLDMGF+ I I P RQTL Sbjct: 123 GAHVIVGTPGRIQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++ FL+ P+R+EV + + + Q + + L + + Sbjct: 183 LFSATYPAGIEQLAARFLRTPERVEVEAQHDDGQIEQRFYEIAPGQRMEAVSTLLRHFRK 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + FC ++ L LE + S A+HG+++QR R +IL+ F ++ ++VA Sbjct: 243 QPV----VAFCATRQQCDELAAQLEAEKISAAALHGDLEQRDRDQILALFANRSLSVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N ++ AE +IHRIGR+GRAG G A +LVA + AIE Sbjct: 299 TDVAARGLDIAGLEMVINVELSRDAEVHIHRIGRSGRAGEKGLALSLVAPAEAGRAQAIE 358 Query: 362 KLIEKKVDWL-----NGDLSSLNPPLEKIDIA 388 L +++ W L PP+ + IA Sbjct: 359 TLQGRELAWYPLPAAKASGEPLLPPMHTLCIA 390 >gi|325928804|ref|ZP_08189971.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118] gi|325540777|gb|EGD12352.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118] Length = 571 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L P ++ + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 11 FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q + Sbjct: 71 LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130 Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TRQTLLFSAT++ + +++ + P+++ V T S TA + + +K LL Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIY--FPSDEEKQTLL 248 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++G Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367 Query: 356 HIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 368 SLPDIEAYIEQKI 380 >gi|325577716|ref|ZP_08147991.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC 33392] gi|325160461|gb|EGC72587.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC 33392] Length = 419 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 150/412 (36%), Positives = 231/412 (56%), Gaps = 9/412 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P V A+ D G+ TPIQ ++P+ LQ DV G AQTGTGKT +F+ Sbjct: 11 FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + PR LIL PTRELA Q+ ++ E K L AL GG ++ Q K +E Sbjct: 71 LLTHQPDFATSQPRALILAPTRELAVQINNDAELLAKTSGLRTALAYGGDGYDKQLKAIE 130 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178 G D+LI T GR++D+ +G + +++I+++V+DEADRM D+GFI I+ + P R Sbjct: 131 AGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQER 190 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237 T+LFSAT++ ++++++ + +P+ IE+ T I E F Y K LL Sbjct: 191 LTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELF---YPSNEDKIPLLLT 247 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ ++ + I+F N K + L G V + G++ Q+ R+ +L F +G + Sbjct: 248 LME-EEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFADGELD 306 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGL I DV HVFNFD+P+ E+Y+HRIGRTGRAG G + + +E ++ Sbjct: 307 ILVATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNL 366 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR 409 AIE+ I + D +SL + K +H+ + + T + R+ Sbjct: 367 PAIEEYIGHSIPVSQYDPNSLISDIPKPYRLKHHSTPQTRNTSTRKTNYRRK 418 >gi|78049510|ref|YP_365685.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123584009|sp|Q3BNH8|RHLB_XANC5 RecName: Full=ATP-dependent RNA helicase rhlB gi|78037940|emb|CAJ25685.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 573 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L P ++ + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 11 FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q + Sbjct: 71 LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130 Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TRQTLLFSAT++ + +++ + P+++ V T S TA + + +K LL Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIY--FPSDEEKQTLL 248 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++G Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367 Query: 356 HIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 368 SLPDIEAYIEQKI 380 >gi|163839948|ref|YP_001624353.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] gi|162953424|gb|ABY22939.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 565 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 153/455 (33%), Positives = 246/455 (54%), Gaps = 28/455 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD + +V A+ DAG V P PIQ T+P+ L HD+ G A+TGTGKT F +P+L Sbjct: 38 FADFNVRADIVEALADAGIVHPFPIQSMTLPVALGGHDIIGQAKTGTGKTLGFGVPVLQR 97 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + +P + LI+ PTRELA QVA++ + + + + GG FE Q Sbjct: 98 VTAPKDEGYDALPVPGAPQALIVVPTRELAVQVANDLQTAARKRGARITTIYGGRAFEPQ 157 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +G +V++ TPGR++D F + L + N+ ++V+DEAD MLD+GF+P ++ + + P Sbjct: 158 IESLTKGVEVVVGTPGRLIDLFKQRHLNLKNVRMVVLDEADEMLDLGFLPDVETLMAATP 217 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 RQT+LFSATM + ++ ++ P I P T Y +S K + Sbjct: 218 AVRQTMLFSATMPGPIVAMARRYMTQPTHIRAADPDDEGLTKRDIRQLVYRAHSMDKIEV 277 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + IIF K+ + L ++GF+ AIHG++ Q +R + L F+ Sbjct: 278 VARILQARGRGRT-IIFTKTKRTAAKVAEELAERGFASAAIHGDLGQGAREQALRAFRNN 336 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ + Y+HR+GRTGRAG G A T V +D+ Sbjct: 337 KVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDM 396 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS 414 I K + D P+E + H ++ + IP+ + G R K Sbjct: 397 PGWGLINKTLGLPFD----------EPVETYSSSPHLYSDLD--IPEGTKG--RLPK--- 439 Query: 415 SQKSHIPLKESEKISKLQQDIQENDADSLGF-RGN 448 SQ++H L +E + L + + + S G RGN Sbjct: 440 SQRTHAGLN-AEVLEDLGETGKRHGGQSTGSGRGN 473 >gi|254363222|ref|ZP_04979270.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213] gi|153095119|gb|EDN75666.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213] Length = 444 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LSP+++ A+ GY +PT IQ TIP L+ D+ G A TGTGKTA+F+LP + Sbjct: 5 MTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRDLLGSAPTGTGKTAAFLLPAI 64 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ + K L++A + GG+ ++ + Sbjct: 65 QHLLDYPRRKPGAPRILILTPTRELAMQVAEQAQALAKFTQLSIATITGGVAYQNHGEVF 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++ + +E+L+ DEADRML MGF + I + + + Sbjct: 125 NKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEADRMLQMGFGQDAEKIAAETRWRKH 184 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL + +E L +P +++ + I+ + K LL ++ Sbjct: 185 TWLFSATLEGELLEDFAERLLNDPIKVDAEPSRRERKKIQQWYYHA-DNVEHKTKLLARI 243 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S+ +++ I+F ++++V L +L K+G + G + Q R + ++ KEG + + Sbjct: 244 I-SEFSVERAIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNQAINRLKEGVVNV 302 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI D+ V N+D+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 303 LVATDVAARGIDIDDIDFVLNYDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 362 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 363 KIKRYTEE 370 >gi|326800907|ref|YP_004318726.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21] gi|326551671|gb|ADZ80056.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21] Length = 420 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 223/372 (59%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF++ +++ ++ G+ PTPIQ + IP++ ++HD+ AQTGTGKTAS++LP++ Sbjct: 1 MDFSEFNFDDRLLEGLMSMGFKIPTPIQQQAIPVIAEKHDLIACAQTGTGKTASYLLPLM 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT---VALLIGGIPFEAQNK 117 + K R + LIL PTRELA Q+ + +T V G+ +E Q + Sbjct: 61 DAICKNDDRPSIS-ALILAPTRELALQIDQQIQGLAYFTGITSIAVYGGGDGVGYEQQRR 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ G D++I TPGR++ H + + + I+ L++DEADRMLDMGF I I +P Sbjct: 120 SLKEGVDIVIATPGRLIAHMSSSTVRLEKIDFLILDEADRMLDMGFKDDILRIVRQLPEQ 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM +++ ++ L+NP+++ + S AE I+ + T+ + +K LL+ Sbjct: 180 RQTLLFSATMPQKIRLFAKALLKNPQQVNIAI-SQPAEKIKQQYYRTFDE--QKVTLLKH 236 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L S D+ + IIFC+ K+NV L L K V + H ++ Q R +IL +FK + Sbjct: 237 IL-STDSFYSIIIFCSTKENVKLLEKELFKNDLKVRSFHSDLQQDEREQILLDFKNRKLN 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++V +D+ +RG+DI + V N+DVP E+YIHRIGRT RA R G A T V D + + Sbjct: 296 ILVGTDVLSRGIDIEGIDLVVNYDVPGDPEDYIHRIGRTARAERTGTAITFVNNRDFRKL 355 Query: 358 DAIEKLIEKKVD 369 +IEK++++ ++ Sbjct: 356 LSIEKMMDRTIE 367 >gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f] gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f] Length = 422 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 221/372 (59%), Gaps = 9/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ + IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G+ +I+ PTRELA Q+ E + ++ + GG I FE Q K Sbjct: 61 NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKCALLQ 236 RQT++FSATM ++Q+++ L NP I+ + ++ E A Y Y ++K +++ Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPSEIK----PAVSKPAEKIIQAAYVCYENQKLGIIR 236 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L + + I+F + K V + +L+ +V +H +++Q R ++ FK G I Sbjct: 237 SLFMDE-VPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRI 295 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI D+ V NFDVP+ +E+Y+HRIGRT RA G A T +++++ + Sbjct: 296 NILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSN 355 Query: 357 IDAIEKLIEKKV 368 +IE +EK++ Sbjct: 356 FKSIENFLEKEI 367 >gi|56461463|ref|YP_156744.1| ATP-dependent RNA helicase RhlB [Idiomarina loihiensis L2TR] gi|61214743|sp|Q5QYF8|RHLB_IDILO RecName: Full=ATP-dependent RNA helicase rhlB gi|56180473|gb|AAV83195.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] Length = 425 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 216/368 (58%), Gaps = 10/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L PK+ A+ AG+ TPIQ ++P+ L DV G AQTGTGKT +F+L Sbjct: 11 FADLALHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVAGQAQTGTGKTLAFLLATFNR 70 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + + PR LI+ PTRELA Q+A + + ++ L + ++ GG +E Q ++L Sbjct: 71 LMQNESSEKTESGPRALIMAPTRELAIQIAHDADALIEHCGLKMGVIYGGEGYEGQKEQL 130 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FT 177 D+L+ T GR++D + + + +IE++V+DEADRM D+GFI I+ + +P Sbjct: 131 AAQPDILVGTTGRLIDFYKQDLFSLKDIEVVVLDEADRMFDLGFIDDIRYLLQKMPDPSK 190 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 R LLFSAT++ +Q+++ + P ++EV TA + E F Y +K LL Sbjct: 191 RLNLLFSATLSYRVQELAYEHMNAPTKLEVEPLQKTATRVTEELF---YPSKPEKFPLLL 247 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ +D I+F N K + L + G++ Q+ R++IL +F EG + Sbjct: 248 TLIE-EDWPDKAIVFANTKHGCEKVHGWLVANEHRAGLLTGDVPQKKRLRILEDFAEGKL 306 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +VA+D+AARGL IP+V HV+NFD+P+ E+Y+HRIGRTGRAG G A +L +E + + Sbjct: 307 DFLVATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAISLACEEYVYN 366 Query: 357 IDAIEKLI 364 + AIE I Sbjct: 367 LPAIEDYI 374 >gi|227550039|ref|ZP_03980088.1| helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227077885|gb|EEI15848.1| helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 430 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 211/364 (57%), Gaps = 10/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG++ ++V A+ + G IQ PL L DV G A+TG GKT +F +P+L Sbjct: 15 FAELGVAAEIVDALHELGITHTFSIQELAAPLALAGKDVIGQARTGMGKTYAFGVPLLDR 74 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + PR LI+ PTRELA QV ++ + K + + + GG P+EAQ L Sbjct: 75 VFDDADVAELDGTPRALIIVPTRELAVQVGEDLSRAAKYTPVRITTVYGGRPYEAQIAVL 134 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DV++ TPGR++D NRG L ++ + +LV+DEAD MLD+GF P IQ + + +P Q Sbjct: 135 SSGVDVVVGTPGRLIDLLNRGNLQLDRVAVLVLDEADEMLDLGFFPDIQKLWAALPQPVQ 194 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +LFSATM + ++ + + P I NTPS+ + T + F + K + Sbjct: 195 AMLFSATMPGPILTLARSLMNRPVHIRAEAANTPSTHSTTRQVVF---RSHRMDKLEVTA 251 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++LQ++ + I+F K+ + L ++GF V ++HG++ Q +R + L F+ G + Sbjct: 252 RILQARGRGRT-IVFTRMKRTAAEVARDLAERGFDVGSVHGDLGQGAREQALEAFRSGEV 310 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+D+ DV HV NF P+ Y+HRIGRTGRAG+ G A TLV ++ + Sbjct: 311 SILVATDVAARGIDVDDVTHVINFQTPDDPMTYVHRIGRTGRAGQTGIAVTLVGFDEGQK 370 Query: 357 IDAI 360 AI Sbjct: 371 WTAI 374 >gi|110737546|dbj|BAF00715.1| DRH1 DEAD box protein - like [Arabidopsis thaliana] Length = 450 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 135/337 (40%), Positives = 206/337 (61%), Gaps = 14/337 (4%) Query: 36 LQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLILEPTRELAAQVADNFEK 94 +Q D+ IA+TG+GKT +++P L++ RM P L+L PTRELA Q+ K Sbjct: 1 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 60 Query: 95 YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154 +GK+ ++ A L GG P Q K++ERG D+++ TPGR+ D ++ ++ + LV+DE Sbjct: 61 FGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDE 120 Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI------EVN 208 ADRMLDMGF P I+ I + VP RQTL+++AT E++K++ + L NP ++ E+ Sbjct: 121 ADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELV 180 Query: 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ 268 S +TIE +A ++S+ L+Q+L+SQ+ IIFC+ K+ L +L + Sbjct: 181 ANKSITQTIE--VLAPMEKHSR----LEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT 234 Query: 269 GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAEN 328 F AIHG+ Q R +L+ F+ G ++VA+D+AARGLD+ D+ V N+D PN E+ Sbjct: 235 -FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVED 293 Query: 329 YIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 Y+HRIGRTGRAG G A+T +D KH + K++E Sbjct: 294 YVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 330 >gi|15221998|ref|NP_175911.1| DEAD box RNA helicase, putative (RH20) [Arabidopsis thaliana] gi|75333448|sp|Q9C718|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20 gi|12321578|gb|AAG50841.1|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana] gi|17065338|gb|AAL32823.1| Unknown protein [Arabidopsis thaliana] gi|22136216|gb|AAM91186.1| unknown protein [Arabidopsis thaliana] gi|332195071|gb|AEE33192.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana] Length = 501 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 133/386 (34%), Positives = 214/386 (55%), Gaps = 17/386 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D+G V+ V AG+ +PTPIQ + P+ ++ D+ GIA+TG+GKT S++LP + Sbjct: 101 FRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVH 160 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+G + + + GG+P Q Sbjct: 161 VNAQPMLAHGDG----PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQV 216 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L++G +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 217 RDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP 276 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ---YSKKCA 233 RQTL +SAT E++++S+ FL NP ++ + + A V ++ Y+K Sbjct: 277 DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVK 336 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ ++ + +F + KK + L G+ +IHG+ Q R +LS F+ Sbjct: 337 LLEDIMDGSRIL----VFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRS 392 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G +M A+D+AARGLD+ DV +V N+D P E+Y+HRIGRTGRAG G A+T + Sbjct: 393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLN 379 + + ++++ ++ +L+S+ Sbjct: 453 ARFAKELTNILQEAGQKVSPELASMG 478 >gi|294626526|ref|ZP_06705125.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599216|gb|EFF43354.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 570 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L P ++ + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 11 FSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q + Sbjct: 71 LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130 Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TRQTLLFSAT++ + +++ + P+++ V T S TA + + +K LL Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIY--FPSDEEKQTLL 248 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++G Sbjct: 249 LGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367 Query: 356 HIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 368 SLPDIEAYIEQKI 380 >gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica] Length = 451 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 135/390 (34%), Positives = 231/390 (59%), Gaps = 9/390 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + LG+ +V +D + KPTPIQ K+IP+ ++ DV G+A+TG+GKTA+F +P+L Sbjct: 26 WQSLGVCDEVAQTCVDLKWSKPTPIQQKSIPIAIEGKDVIGLAETGSGKTAAFAIPVLQT 85 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L K R+ L++ PTRELA Q+ + F+ G + L+ A ++GGI +Q L + Sbjct: 86 LLKTPGGGRLS-CLVMTPTRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAKK 144 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGR++DH + + + ++ L++DEADR+L++ F + I +P RQT+ Sbjct: 145 PHVIVATPGRLVDHLEKTRGFNLKALKFLIMDEADRILNLDFEAEVDKILRAIPRERQTM 204 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCALLQQLL 239 LFSATMT +++K+ L+NP +I +N+ T + ++ F+ + K+C L+ L Sbjct: 205 LFSATMTAKVKKLQRAALKNPVKISINSKYKTVDKNIQKYMFIP---EAHKECYLVSLLN 261 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q + + +IF + + +++ G+ +HG + Q+ R+ L+ FK + ++ Sbjct: 262 ELQGS--SFMIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQKRLGALARFKGKSRSIL 319 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 V +D+A+RGLD+P V V N+DVP ++YIHR+GRT RAGR GK+ T V++ D++ Sbjct: 320 VCTDVASRGLDVPHVDCVINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVSQYDVELYQK 379 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389 IE I KK+D + + E++D A+ Sbjct: 380 IEAHIGKKLDQWPCEKDEVMALKERVDEAK 409 >gi|167382648|ref|XP_001736203.1| ATP-dependent RNA helicase DBP2 [Entamoeba dispar SAW760] gi|165901364|gb|EDR27447.1| ATP-dependent RNA helicase DBP2, putative [Entamoeba dispar SAW760] Length = 535 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 213/360 (59%), Gaps = 7/360 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59 + F + ++ + + Y+KPTPIQ P+VLQ DV GIA+TG+GKT SF++P + Sbjct: 153 LTFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAI 212 Query: 60 LTILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + IL+ A+ R PR LIL PTREL Q+AD K+ K ++ GG+P Q K Sbjct: 213 IHILDTPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTSIKTVRCFGGVPQSCQMKD 272 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + G D+ + TPGR++D RG ++ L++DEADRML+MGF +Q+I + R Sbjct: 273 FQSGCDICVATPGRLIDFIKRGVTNLSRCTFLILDEADRMLEMGFEVQVQDIIGQIRPDR 332 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQ 237 QT++++AT +Q+ + F+ +P +I + P A E+++ + Q + + + + Sbjct: 333 QTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQ--IVEVCQERDRDSKMNE 390 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ + K +IF K++ NLC+ L Q + V +HG+ Q R + LS+FK G + Sbjct: 391 IVKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQAERDRALSDFKSGAVN 450 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR--HGKAFTLVAKEDIK 355 ++A+DLA+RGLDI ++ V N+++P+ ENYIHRIGRTGR GR G+A +L D + Sbjct: 451 YLIATDLASRGLDIRNIEIVINYEMPSDIENYIHRIGRTGRMGRSVEGEAISLFTYADAR 510 >gi|71901632|ref|ZP_00683711.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|71728608|gb|EAO30760.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] Length = 544 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 137/375 (36%), Positives = 223/375 (59%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F+ L P ++ + A + TPIQ T+P+ L D+ G AQTGTGKT +F++ ++ Sbjct: 10 LNFSSFDLHPALLTGLTRAAFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 69 Query: 61 TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L V PR LIL PTRELA Q+ ++ K+G N L AL+ GG+ ++ Q Sbjct: 70 NRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +GADV+I TPGR++D+ + +++ + EI V+DEADRM D+GFI I+ I +P Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +RQTLLFSAT++ + +++ ++ P+++ T S T + + +K Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIY--FPAEEEKIP 247 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + M+ ++F N K V + +L++ G+ V + G++ QR R +L+ F++ Sbjct: 248 LLLGLLSRSEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 306 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 307 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 366 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 367 AMSLPDIEAYIEQKI 381 >gi|212710200|ref|ZP_03318328.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM 30120] gi|212687199|gb|EEB46727.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM 30120] Length = 428 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 153/414 (36%), Positives = 237/414 (57%), Gaps = 16/414 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ G+ TPIQ T+P ++ DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALNKKGFNFCTPIQASTLPYTVEGKDVAGQAQTGTGKTLAFLTSTFHF 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LI+ PTRELA Q+ + ++ + L + L GG ++ Q + Sbjct: 71 LLTHPAIEGKKTNQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLRV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 L+ G D+LI T GR++D+ +G + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LQDGVDILIGTTGRLIDYAKQGHVDLAAIQVIVLDEADRMYDLGFIKDIRWLFRRMPSAT 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R LLFSAT++ +++++ + +P+ IEV T I E F Y +K LL Sbjct: 191 DRLNLLFSATLSYRVRELAFEQMNSPEYIEVEPLQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ + IIF N K ++ L G V + G++ Q+ R++IL F +G Sbjct: 248 QTLLE-EEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGQ 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 IDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYAL 366 Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 ++ AIE+ I+ V N D LS L P ++ + + R+N+ P++ G Sbjct: 367 NLPAIEEYIQHSIPVSKYNSDALLSDLPAP-KRRHRPRPSGPRRNSNAPRRHNG 419 >gi|158257264|dbj|BAF84605.1| unnamed protein product [Homo sapiens] Length = 483 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 156/416 (37%), Positives = 232/416 (55%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++ G+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVDGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH + I LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E P ST E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q QD ++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 IQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I+KK++ + + + + L ++++ R+ I ++ FD +K+ Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNV-----VRRECEIKLEAAHFDEKKE 409 >gi|327399574|ref|YP_004340443.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima DSM 10411] gi|327182203|gb|AEA34384.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411] Length = 526 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 219/370 (59%), Gaps = 14/370 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F LGLS ++ + G+ KPTPIQ K IPL+LQ D+ A TGTGKT +F LP++ Sbjct: 6 NFKGLGLSEGILKTLQKQGFEKPTPIQEKVIPLILQSSKDLVAEAPTGTGKTLAFGLPLI 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L++ V+ +IL PTRELA QV D + L + GG E Q ++L+ Sbjct: 66 DLLKEKTGYVQ---AVILAPTRELAIQVCDEINAFKGKKRLKAFPIYGGQSIELQKRRLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+++ T GRI+DH NR L ++ I+ ++DEAD ML+MGFI I+ I + T+ Sbjct: 123 EGVDIVVGTAGRIIDHINRKTLNLSKIDYFILDEADEMLNMGFIDDIKEILTHTNPTKNM 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +FSATM +E++++++ +++ P+ + + I + V ++ C + Sbjct: 183 FMFSATMPEEIKRLAKQYMKKPEFVRIEKSKMLTSQI-YFEVKEQDKFEALCRI------ 235 Query: 241 SQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +D +++ G+IFC K + N+ + L +G+ AIHG++ Q R +IL F++ I + Sbjct: 236 -RDAVEDFYGLIFCKTKVDAQNVANKLIDRGYYADAIHGDLSQDKRERILKRFRDKKINM 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV N+ +P AE+YIHRIGRTGRA + G A T V+ + + + Sbjct: 295 LVATDVAARGIDIDGLTHVINYSMPQDAESYIHRIGRTGRAQKKGIAITFVSPSEYRKLR 354 Query: 359 AIEKLIEKKV 368 I+KL + ++ Sbjct: 355 LIQKLAKAEI 364 >gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii] gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii] Length = 653 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 144/393 (36%), Positives = 221/393 (56%), Gaps = 15/393 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +LGL ++ A+ GY PTPIQ + +P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 185 FKELGLDSLLMGAITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVH 244 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P +I PTRELA Q+ + K+ K Y + V+ + GG+ Q K+L+ Sbjct: 245 IMDQEELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELK 304 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G ++++ TPGR++D L M LV+DEADRM D+GF P I++I + RQT Sbjct: 305 AGCEIVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 364 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM ++ ++ L P R+ E + K +L +L Q Sbjct: 365 LLFSATMPRRVETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADKLQWMLSKLPQ 424 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F + K V L L+ GF V A+HG+ DQ SR+ +L FK G ++V Sbjct: 425 MVDA-GDVLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLV 483 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIKHIDA 359 A+D+AARGLDI + V N+D + ++HR+GRTGRAG + G A+TLV +++ + Sbjct: 484 ATDVAARGLDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVTQKEARFAG- 542 Query: 360 IEKLIEKKVDWLNGDLSS-LNPPLEKIDIAQHN 391 D +NG +++ N P E +D+A + Sbjct: 543 ---------DLVNGFVAAGQNVPSELMDLAMKD 566 >gi|254456111|ref|ZP_05069540.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp. HTCC7211] gi|207083113|gb|EDZ60539.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp. HTCC7211] Length = 536 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 148/419 (35%), Positives = 231/419 (55%), Gaps = 20/419 (4%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT--ILEKGRARVRMPRTLIL 78 + KPTPIQ IP L+ D+ G AQTGTGKT +F +P++ IL+K L++ Sbjct: 22 FTKPTPIQGMAIPAALEGKDILGTAQTGTGKTLAFSIPLINKLILDKNAF------ALVM 75 Query: 79 EPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137 PTRELA QV + + N+ ALLIGG + Q ++L + +++ TPGRI DH Sbjct: 76 CPTRELATQVMEAIKSIISDKINIKTALLIGGESMQKQLRQLGNRSRIIVGTPGRINDHL 135 Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 R L ++ + LV+DE DRMLDMGF P I+ + VP QTLLFSAT+ + ++SE Sbjct: 136 KRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVLKFVPKDHQTLLFSATLPQNILRISER 195 Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257 +L P+RI S I+ + + + +K L+ Q L + ++ ++F K++ Sbjct: 196 YLHKPERISTGATSVPIAKIKQETLQVFKE-NKYDELIDQFLARKGSI---LVFVKTKRS 251 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 + L+++G S IHG++ Q R +++++F++G ++++A+D+AARGLDIP + HV Sbjct: 252 ADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKRILIATDVAARGLDIPLIQHV 311 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL-- 375 N+D+P E+Y+HRIGRT RAG G A T + +D ++I KLI+ + L Sbjct: 312 INYDLPQVPEDYVHRIGRTARAGSEGSALTFLTPDDRSMWNSINKLIDPNFKAVPSGLRR 371 Query: 376 SSLNP-----PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKESEKIS 429 S N P K A+ +S+ F + K+Y +S P ++ EK S Sbjct: 372 DSKNKRRGKGPNNKKRKAREEKRSFGKGRQDRSSSFRNKPKSYDKSRSGKPPRDGEKKS 430 >gi|326575788|gb|EGE25711.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis CO72] Length = 391 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 231/381 (60%), Gaps = 25/381 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F DL LS ++ AV + + TPIQ + +P L D G AQTGTGKTA+F ++T Sbjct: 8 NFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATF---LIT 64 Query: 62 ILEKGRAR------VRM---PRTLILEPTRELAAQV-AD--NFEKYGKNYNLTVALLIGG 109 I+E R +R PR L+L PTRELA Q+ AD ++ + YNL + GG Sbjct: 65 IIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCIT---GG 121 Query: 110 IPFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168 F+ Q ++L +R D+LI TPGRI+D ++G+L ++ +E+ V+DEADRMLDMGFIP I+ Sbjct: 122 SDFDKQLEQLHKRPLDILIGTPGRIIDWVDKGELFLDRVEVFVLDEADRMLDMGFIPDIK 181 Query: 169 NITSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 I +P RQ+LLFSAT ++ ++ +L P +E+ S T + I+ F Sbjct: 182 RIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTE 241 Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 + +K + L+Q+L + D++K IIF N+K V L L + V + G++ Q+ R + Sbjct: 242 R--EKTSALKQIL-ADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRER 297 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L FK+G + ++VA+D+A RG+ + DV HV N+ +P+ ++Y+HRIGRTGRAG G + Sbjct: 298 YLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSI 357 Query: 347 TLVAKEDIKHIDAIEKLIEKK 367 + V++ D ++ A+E+ I++K Sbjct: 358 SFVSENDAFNLPALERHIDQK 378 >gi|225569182|ref|ZP_03778207.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM 15053] gi|225161981|gb|EEG74600.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM 15053] Length = 526 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 220/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P+++ AV G+ + +PIQ K IPLV + D+ G AQTGTGKTA+F +P+L Sbjct: 6 FEELELCPEIMKAVKKMGFEEASPIQAKAIPLVREGRDIIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 EK + + + ++L PTRELA QVAD + + + V + GG Q + L+ Sbjct: 64 -EKIDPKNKKLQAVVLCPTRELAIQVADEIRTLAEYMHGIKVLPIYGGQEIVKQIRSLKS 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH R + M ++ +V+DEAD ML+MGF I+ I VP RQT+ Sbjct: 123 GVQLMIGTPGRVMDHMRRKTVKMEHVHTVVLDEADEMLNMGFREDIETILEGVPQERQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ F ++ + ++V T IE + + K +L +LL Sbjct: 183 LFSATMPKPILDITKKFQKHAEIVKVTKKELTVPNIEQFYYEVKPK--NKEEVLSRLLDI 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + K ++FCN KK V L + L +G+ +HG++ Q R +++ F+ G ++VA Sbjct: 241 YNP-KLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQAQRDRVMQGFRSGKTDILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ +V VFN+D+P E Y+HRIGRTGRAGR G++F+ V+ +++ + I+ Sbjct: 300 TDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLREIQ 359 Query: 362 KLIEKKV 368 + + K+ Sbjct: 360 RYCKTKI 366 >gi|170726099|ref|YP_001760125.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811446|gb|ACA86030.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 432 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 223/371 (60%), Gaps = 16/371 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL P+++ + + Y+ PT IQ ++IP +L+ D+ G A TG+GKTA+F LP+L Sbjct: 15 FDELGLIPELLQRIAELEYLTPTQIQSQSIPHLLEGKDLLGGANTGSGKTAAFALPILQH 74 Query: 63 LEKGR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117 L G A+ M R L+L PTRELA QVA +F+ Y + L V + GG+ Q Sbjct: 75 LHVGDKPVAKGNMVRALVLVPTRELAKQVAASFKSYAQGLTPKLKVEAVFGGVSVNTQML 134 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADVL+ TPGR+LD + + ++ LV+DEADRML +GF ++ + +L+P Sbjct: 135 ALRGGADVLVATPGRLLDLLSSNAIKLSQASHLVLDEADRMLSLGFAEELEKVLALLPKR 194 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQYSKKCALLQ 236 +QTLLFSAT +E+++++++ L +P +E++ S+ T ++ + ++K ALL Sbjct: 195 KQTLLFSATFPEEVKELTDSLLNSP--VELHLESTEESTLVQQVYTVNK---NRKTALLA 249 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ ++ + ++F + K L L K G S H + Q SR ++L FK G I Sbjct: 250 HLINERN-WRQVLVFASAKNTCNRLEQKLAKAGVSAQVFHSDKSQGSRTRVLDGFKSGEI 308 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++A+D+AARG+DI + V N+++P +Y+HRIGR+GRAG G A +L++ ++ +H Sbjct: 309 SVLIATDIAARGIDIEKLPVVINYELPRSPSDYMHRIGRSGRAGEAGLALSLISHDEYQH 368 Query: 357 IDAIEKLIEKK 367 KLIEKK Sbjct: 369 F----KLIEKK 375 >gi|332534743|ref|ZP_08410571.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis ANT/505] gi|332035830|gb|EGI72314.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis ANT/505] Length = 408 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 206/370 (55%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++ L K++ A+ GY PT IQ + IP LQ D+ A TGTGKTA+F++P + Sbjct: 1 MQFSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R R L++ PTRELA Q+ + E K +L + ++ GGI + + Sbjct: 61 QYLLDFPRRDPGFARVLVMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEIF 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+ D+LI TPGR++++ ++E+L+IDEADRMLDMGF + I RQ Sbjct: 121 EKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQ 180 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT+ D +++ +E L +P +E + I H +V Y K LL Sbjct: 181 CFLFSATLEGDSVERFAEKTLNDPALLEAESSRKEKAKI-HQWVHLADDYHHKLELLVNT 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L D K I+F ++ + L L G + G + Q RMK + NF G ++ Sbjct: 240 LNGPDVTK-AIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+ D+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +LV DI + Sbjct: 299 LIATDVAARGIDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358 Query: 359 AIEKLIEKKV 368 +E+ +E+K+ Sbjct: 359 KVERYVEQKL 368 >gi|257456960|ref|ZP_05622141.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580] gi|257445669|gb|EEV20731.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580] Length = 605 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 223/370 (60%), Gaps = 6/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F++ L ++ + +AGY++ TP+Q + + D+ +QTGTGKTA++++ ++ Sbjct: 12 MNFSNFNLDSHLLQGLEEAGYIECTPVQEQVFSAGMDGSDLYVQSQTGTGKTAAYLVTLM 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R P LIL PTRELA QV + K GK L A GG+ ++ Q + L+ Sbjct: 72 QRMLAQGTESRRP-ALILVPTRELAVQVEEEAHKLGKYTGLRAASFYGGVGYQQQEEALK 130 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT--R 178 G D++I TPGR++D + + ++ LVIDEADRM DMGF P ++++ S++ R Sbjct: 131 NGVDLIIGTPGRVIDLEKSKTMKLKHVGFLVIDEADRMFDMGFYPDLRSLLSVLSKAEER 190 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QT+LFSAT+ ++ ++ + + K I ++ + T + I A +K +LL + Sbjct: 191 QTMLFSATLNTWVKNLAWEYTIDAKEITIDADNVTVDEINQKLFHVAA--DQKMSLLLGI 248 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+++ +N IIFCN KK + L G++ + G++ Q R+ I+ +FK G + Sbjct: 249 LRNEKP-ENTIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLTC 307 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI D+ V N+D+PN AENY+HRIGRT RAG+ G A++L +++D+ ++ Sbjct: 308 LVATDVAARGIDINDLAMVINYDLPNEAENYVHRIGRTARAGKTGAAYSLCSEQDVYNLP 367 Query: 359 AIEKLIEKKV 368 IEK IE K+ Sbjct: 368 DIEKYIEAKI 377 >gi|238919400|ref|YP_002932915.1| ATP-dependent RNA helicase DbpA [Edwardsiella ictaluri 93-146] gi|238868969|gb|ACR68680.1| ATP-independent RNA helicase DbpA [Edwardsiella ictaluri 93-146] Length = 457 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 138/352 (39%), Positives = 208/352 (59%), Gaps = 8/352 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY TP+Q T+P +L DV A+TG+GKTA+F L +L ++ R + ++L+L Sbjct: 22 GYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDASRF---ITQSLVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N+ V L GG+PF AQ L +++ TPGR+LDH Sbjct: 79 PTRELADQVAAALRRLARYMPNIKVLTLCGGVPFGAQRDSLIHAPHIIVATPGRLLDHLK 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + L + ++ L++DEADRMLDMGF + + S P RQTLLFSAT E+ +S Sbjct: 139 KETLSLEALQTLILDEADRMLDMGFADALDEVISWAPEKRQTLLFSATWPAEIAAISRRI 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 ++P IE++T +E F S K LLQ LL SQ + ++FCN KK+ Sbjct: 199 QRDPLTIEIDTDGEL-PAVEQRFYEV--SRSGKTGLLQALL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 + +LE+ G SV +HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVYDALEESGQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALAMVI 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370 N+++ E ++HRIGRT RAG G A +L A E+ + +A+E+++ ++ W Sbjct: 315 NYELSWDPEVHVHRIGRTARAGASGLAISLCAPEEAQRANALEEMLGVRLQW 366 >gi|170755466|ref|YP_001781330.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum B1 str. Okra] gi|169120678|gb|ACA44514.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B1 str. Okra] Length = 481 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 223/368 (60%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + LS +++ ++ GY P+ +Q + IPL+L+ D+ ++TG+GKTA+F +P Sbjct: 4 LTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK + P+ L+L PTRELA Q+ + L + G P Q ++L+ Sbjct: 62 -VCEKLELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR LDH R L + I+ V+DEAD ML+MGFI ++ + +P R T Sbjct: 121 QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ ++++ + + ++ NP+ I +N + T +TI C+ + K +LLQ+++ Sbjct: 181 MLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYE--VEDKDKFSLLQKII- 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + N IIFCN ++ V + +++K+G + +HG ++Q+ R++ + FKEG Q +V Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ I ++ HV N+++P E+Y+HRIGRTGRAG+ G A T + + ++ I Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVIFLEDI 357 Query: 361 EKLIEKKV 368 E IEK++ Sbjct: 358 EDYIEKEI 365 >gi|21233204|ref|NP_639121.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770146|ref|YP_244908.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv. campestris str. 8004] gi|188993353|ref|YP_001905363.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv. campestris str. B100] gi|32363344|sp|Q8P4D4|RHLB_XANCP RecName: Full=ATP-dependent RNA helicase rhlB gi|81303902|sp|Q4UPY5|RHLB_XANC8 RecName: Full=ATP-dependent RNA helicase rhlB gi|226739237|sp|B0RWT6|RHLB_XANCB RecName: Full=ATP-dependent RNA helicase rhlB gi|21115552|gb|AAM43476.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575478|gb|AAY50888.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167735113|emb|CAP53325.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris] Length = 573 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 139/375 (37%), Positives = 225/375 (60%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L P +V + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 9 LTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68 Query: 61 TILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q Sbjct: 69 NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 TRQTLLFSAT++ + +++ + P+++ V T + TA + + +K Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDEEKQT 246 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++ Sbjct: 247 LLLGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 366 AMSLPDIEAYIEQKI 380 >gi|325913813|ref|ZP_08176172.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC 35937] gi|325539888|gb|EGD11525.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC 35937] Length = 570 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 139/375 (37%), Positives = 225/375 (60%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L P +V + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 9 LTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68 Query: 61 TILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q Sbjct: 69 NRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 TRQTLLFSAT++ + +++ + P+++ V T + TA + + +K Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDEEKQT 246 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++ Sbjct: 247 LLLGLLSRSEGART-MVFVNTKAFVERVARTLERNGYRVGVLSGDVPQKKRESLLNRFQK 305 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 366 AMSLPDIEAYIEQKI 380 >gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83] gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas gingivalis W83] Length = 427 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 135/379 (35%), Positives = 220/379 (58%), Gaps = 8/379 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L +V+ + +++ TP+Q TIP +L+ DV AQTGTGKTA+++LP+L Sbjct: 1 MRFDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L G + +I+ PTRELA Q+ E + ++ + GG + +E Q + Sbjct: 61 DRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + GAD++I TPGR++ H N G ++++ V+DEADRMLDMGF I I +P + Sbjct: 121 GMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSS 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT++FSATM +++K++ + L++P +E+ ++ ++ AQ K +L++ Sbjct: 181 CQTVMFSATMPPKIRKLAASILRDPIEVEIAISRPPESIMQSAYICHEAQ---KLPILRK 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + Q K IIF + K V L +L K GF+V +H +++Q R +++ +FK G + Sbjct: 238 LFE-QSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVD 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI ++ V N+D+P+ E+Y+HRIGRT R G A T V++E+ Sbjct: 297 VLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSD 356 Query: 357 IDAIEKLIEKKVDWLNGDL 375 IE + K V L DL Sbjct: 357 FHKIETFLGKSVYKLPVDL 375 >gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia malayi] gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative [Brugia malayi] Length = 462 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 141/415 (33%), Positives = 240/415 (57%), Gaps = 16/415 (3%) Query: 1 MDFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59 + F LG++ V+C D + KPT +QI +P ++ D+ G+A+TG+GKTA+F +P+ Sbjct: 24 ITFQKLGVT-DVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPI 82 Query: 60 LTILEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L +A + P+ L+L PTRELA Q+ + FE G + + +A+++GG+ Q+ Sbjct: 83 L------QALLETPQKLFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQS 136 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L + V++ TPGR++DH K + ++ LV+DEADR+L+M F ++ I ++P Sbjct: 137 LALAKRPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIP 196 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R+T L+SATMT ++ K+ L +P RIEV++ T + ++ ++ + Y K A L Sbjct: 197 KERRTYLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYI--FIPYKYKEAYL 254 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L ++ + I+FC+ + + L K GF +HG + Q R+ L+ FK Sbjct: 255 IYIL-NEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKA 313 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++V +D+A+RGLDIP V V N+DVP ++++Y+HR+GRT RAGR G A T V + D++ Sbjct: 314 STVLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVE 373 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 IE+LI KK+ + + +E+++ AQ ++ + +K G RR+ Sbjct: 374 IYQKIERLIGKKLPLFETVENDVMLLVERVEEAQKLAKQEMKEMEEKK-GRKRRQ 427 >gi|157376468|ref|YP_001475068.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318842|gb|ABV37940.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 429 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 216/368 (58%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L L+P ++ A+ GY + T +Q + IP+ L D+ A+TGTGKTA+F LP++ Sbjct: 1 MKFDALELNPSILEAIDVCGYQQLTQVQSEVIPVALTGVDLMACAETGTGKTAAFALPLI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R LIL PTRELA QVA+N +Y + L + GG Q K L Sbjct: 61 QRLIFDEVNLGSLRGLILTPTRELAIQVAENISRYCQFTALKTLAVYGGANMNPQRKALN 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G D+L+ TPGR+ D + L +++++ LVIDEADRMLDMGF+ I+ + +LV T Sbjct: 121 AGVDILVATPGRLFDFIGQHGLDLSDVKTLVIDEADRMLDMGFVRDIERVKALVAAEHIT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 FSAT +D+++ +++ LQ+P+ I V S + + ++ +K LL +L+ Sbjct: 181 HFFSATYSDDVKALAQKMLQSPQWINVAQSRSASSVEQEIYL---VDKRRKAELLSELV- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F + K++ +L + L+ G HG+ Q +R + L FK G ++++V Sbjct: 237 GRNNWQQVLVFASSKESAEHLQNELKLDGVKSAVFHGDKTQGARNRALEEFKNGMLRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N ++P AE+YIHRIGRTGRAG G+A + V D K ++ I Sbjct: 297 ATDVAARGLDIQALPLVINLELPFDAEDYIHRIGRTGRAGLKGRAISFVCPSDEKMLEEI 356 Query: 361 EKLIEKKV 368 E LIE K+ Sbjct: 357 ETLIELKL 364 >gi|91794299|ref|YP_563950.1| ATP-dependent RNA helicase DbpA [Shewanella denitrificans OS217] gi|91716301|gb|ABE56227.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 470 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 223/367 (60%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L +++ + GY T IQ +++P +L DV G +TG+GKTA+F L +L Sbjct: 16 FSSLSLKTELLENLKTMGYESMTQIQAQSLPPILAGDDVIGQGKTGSGKTAAFGLGLLNK 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ R R++ TL++ PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 76 LDVKRFRIQ---TLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQVGSLEH 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI+DH +R +L ++N+ +LV+DEADRML+MGF +I I P RQTL Sbjct: 133 GAHIIVGTPGRIIDHLDRNRLDLSNVNMLVLDEADRMLEMGFQDHIDAIIEQTPRERQTL 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D+++ +++ + P ++V + + A +IE F + +K +LL Sbjct: 193 LFSATFPDQIKSIADEIMYKPVMVKVES-THDAISIEQHFYQL--EDNKSRLEALRLLLL 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN K+ + L + GFSV A+HG+++QR R ++L F + +++VA Sbjct: 250 SEQPESAVVFCNTKRETQQVADELAEFGFSVLALHGDLEQRDRDQMLLQFANQSARILVA 309 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + VFNF + AE ++HRIGRTGRAG G A++ + +D + IE Sbjct: 310 TDVAARGLDIDALDAVFNFHLAYDAEVHLHRIGRTGRAGSTGAAYSFIGHDDGYKVAMIE 369 Query: 362 KLIEKKV 368 +++ ++ Sbjct: 370 EMLNIEI 376 >gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis DSM 14884] gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis DSM 14884] Length = 517 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 215/371 (57%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L P+V A+ + G+ TP+Q T+P L+ DV A+TGTGKT +F LP+ Sbjct: 1 MQFNELSLKPEVQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIA 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 LE RA+ R PR L+L PTRELA QVA + + L V + GG + Q + L Sbjct: 61 ERLEPARAKGRAPRALVLAPTRELALQVAGELDWAAPH--LEVLTVYGGTGYGQQAQALR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG DV++ TPGR LD+ RG L + +E++V+DEAD ML MGF ++ + + RQT Sbjct: 119 RGCDVVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSARQT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM ++++E L++P N E + + +A A + + A+L +L Sbjct: 179 LVFSATMPSWARRLAERHLKDP--FVANLVKD--EAVTYRELAIEAPTATRIAVLSDVLH 234 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + I+F K L +L + + A+HG++ Q +R ++++ F++G ++++V Sbjct: 235 AYGAGR-AIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRVLV 293 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+P+V V ++ +P R E Y HR GRTGRAGR G L + + + + Sbjct: 294 ATDVAARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAGRTGTVVLLYGPRERRTVADL 353 Query: 361 EKLIEKKVDWL 371 E+ + ++ + L Sbjct: 354 ERALRRRFERL 364 >gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] Length = 531 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 146/414 (35%), Positives = 230/414 (55%), Gaps = 25/414 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FAD G+S +V A+ D G P PIQ T+P+ L+ +D+ G A+TGTGKT F +PML Sbjct: 38 FADFGVSTPIVDALKDKGITHPFPIQALTLPVALRGNDIIGQAKTGTGKTLGFGIPMLEN 97 Query: 62 ---ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 I E+G V + P+ L++ PTRELA QVA+ L + + GG +E Sbjct: 98 TAGIDEEGWESVPVQARGKPQGLVILPTRELAKQVAEELRAAAARRRLRIVEVYGGRAYE 157 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L+ GA++++ TPGR++D L + + +V+DEAD MLD+GF+ ++ I + Sbjct: 158 PQQEALKEGAEIVVGTPGRLVDLMKHRFLDLTYVRTVVLDEADEMLDLGFLEDVEKILAS 217 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKC 232 P R T+LFSATM + ++ ++ P I PS T T++ Y ++ K Sbjct: 218 TPSNRHTMLFSATMPGPVVAMARRYMSRPTHIRAADPSDTGVTVKSVRQVVYRCHALNKS 277 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 +L ++LQ++ I+F K+ L L ++GF+ A+HG++ Q +R + L F+ Sbjct: 278 EVLARILQAKGRGLT-IVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQALRAFR 336 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G + ++VA+D+AARG+D+ DV HV N+ P + YIHRIGRTGRAG+ G A T V + Sbjct: 337 NGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYIHRIGRTGRAGQSGTAVTFVDWD 396 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNP-PLEKIDIAQHNHARKNNPIPQKSTG 405 D+ I+K + + P PLE ++H ++ + IP+ +TG Sbjct: 397 DLPRWTLIDKALNLR-----------QPEPLETYHTSEHLYSDLD--IPEGATG 437 >gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis] gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis] Length = 446 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 213/367 (58%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ + A G+ P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 16 FKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILQA 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L R+ LIL PTRELA Q+++ E G + A+++GGI +Q L + Sbjct: 76 LLDNPQRLF---ALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKK 132 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR++DH K + ++ LV+DEADR+L+M F + + ++P R+T Sbjct: 133 PHIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERRTF 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT ++QK+ LQ P ++EV T T E ++ ++ +++ K C L+ L + Sbjct: 193 LFSATMTKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLFIPSKF-KDCYLVYVL--N 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++FC NV + L G +HG + Q R+ L+ FK + ++VA Sbjct: 250 ELAGNSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILVA 309 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR G++ T V + D++ IE Sbjct: 310 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIE 369 Query: 362 KLIEKKV 368 LI KK+ Sbjct: 370 HLIAKKL 376 >gi|146184027|ref|XP_001027635.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila] gi|146143373|gb|EAS07393.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila SB210] Length = 713 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 150/396 (37%), Positives = 228/396 (57%), Gaps = 26/396 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + D ++ V A + KP+PIQ P+VL HD+ GIA+TG+GKT SF+LP + Sbjct: 101 LSWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSI 160 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 ++KG P L+L PTRELA Q+ E++GK+ L A + GG + Sbjct: 161 VHINAQPTVKKGDG----PIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYS 216 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L++G DV+I TPGR++D + + LV+DEADRMLDMGF I+ I + Sbjct: 217 QRALLQQGVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQI 276 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPS-STAETIEHCFVATYAQYSKKC 232 RQTL+FSAT +Q +++++ +N P +++ + E I+ T Q K Sbjct: 277 RPDRQTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVT-DQSKKIN 335 Query: 233 ALLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 L++QL L +D + +IF KK ++ L K+GF AIHG+ Q+ R +++ Sbjct: 336 QLIKQLDCLTQKDKV---LIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNK 392 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++++A+D+A+RGLD+ DV HVFN+D P E+Y+HRIGRTGRAG +G A + + Sbjct: 393 FKSGECRILIATDVASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLT 452 Query: 351 KEDIKHI--DAIEKLIEKK----VDWLNGDLSSLNP 380 ED K I + ++ L + K +D L DL+S+NP Sbjct: 453 FEDDKKISREYVQMLHDAKQEIPIDLL--DLASINP 486 >gi|313202537|ref|YP_004041194.1| dead/deah box helicase domain protein [Paludibacter propionicigenes WB4] gi|312441853|gb|ADQ78209.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes WB4] Length = 408 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 214/374 (57%), Gaps = 13/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L V+ + + + TP+Q +TIP++LQ+ DV AQTGTGKTA+F+LP+L Sbjct: 1 MRFDELPLCDAVLDGLQAMNFKEATPVQAETIPVILQKRDVIACAQTGTGKTAAFILPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L+ +I+ PTRELA Q+ E + + + + GG ++ Q + Sbjct: 61 HNLQAEPLAADKVNAIIMAPTRELAQQIDQQMEGFSYFTSFSSVAVYGGNDASAWDTQRR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ GADV+I TPGR+L H N + ++++ ++DEADRMLDMGF I + + +P Sbjct: 121 GLQNGADVVIATPGRLLSHINLYDIDFSHVKYFILDEADRMLDMGFFDDIMQVVNRLPKD 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNT---PSSTAETIEHCFVATYAQYSKKCAL 234 RQT++FSATM +++ +++ L NP +++ P S +T C+ A +K + Sbjct: 181 RQTIMFSATMPPKIRLLAKTILNNPVEVKIAVSRPPESIMQTAYICYEA------QKHGI 234 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 ++ L Q+ K IIF K V L + + G SV +H ++DQ R ++ FK Sbjct: 235 IRHLFAEQEATKV-IIFSGSKLKVKELFKTFRQMGLSVGEMHSDLDQAQRDHVMHEFKNN 293 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+ +RG+DI D+ V N+DVP+ AE+Y+HRIGRT RA G + T V++E+ Sbjct: 294 RVSILVATDIVSRGIDIDDISLVINYDVPHDAEDYVHRIGRTARASAKGMSITFVSEEEQ 353 Query: 355 KHIDAIEKLIEKKV 368 IE +EK + Sbjct: 354 YKFKQIEDFLEKDI 367 >gi|307181904|gb|EFN69344.1| ATP-dependent RNA helicase vasa [Camponotus floridanus] Length = 355 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 139/356 (39%), Positives = 208/356 (58%), Gaps = 14/356 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F GL ++ + +GY KPTP+Q IP+++ D+ AQTG+GKTA+FV+P+L T Sbjct: 1 FNQTGLRTILLDNIKKSGYTKPTPVQKYAIPIIMSGRDLMACAQTGSGKTAAFVVPILHT 60 Query: 62 ILEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +LE R + P+ LI+ PTREL Q+ +K+ N + + GG Sbjct: 61 LLENPRDLITTSTSCEPQVLIVSPTRELTQQIYQQAKKFSLNSIIRCEVAYGGTSVSHNR 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SL 173 +K+ G VL+ TPGR+LD RG++ ++++ V+DEADRMLDMGF+P I+ I ++ Sbjct: 121 EKIFAGCHVLVATPGRLLDFIGRGRIKLSSLRFFVLDEADRMLDMGFLPDIEKIVDHETM 180 Query: 174 VPFT-RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 VP RQTL+FSAT E+Q+++ FL+N + V ++ F Q K+ Sbjct: 181 VPAEERQTLMFSATFPSEIQELAGRFLKNYLFLAVGIVGGACADVQQNFYQASGQPEKR- 239 Query: 233 ALLQQLLQSQDTM---KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 LL++LL Q M + ++F QK++ + L + F +IHG+ QR R + LS Sbjct: 240 KLLKELLDKQSQMGSIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEALS 299 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 +FK G + ++VA+ +AARGLDI +V HV NFD+P + Y+HRIGRTGR G GKA Sbjct: 300 DFKRGKMSILVATAVAARGLDIKNVAHVINFDLPKTIDEYVHRIGRTGRVGNRGKA 355 >gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492] gi|156862187|gb|EDO55618.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492] Length = 428 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 224/371 (60%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ ++IP++L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MKFSELHLNGNVLEALDAMRFEECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +++ PTRELA Q+ E + ++ + GG + FE Q + Sbjct: 61 NKLSEGGHPADAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ N L NP +++ + ++ +V Q K +++ Sbjct: 181 RQTIMFSATMPAKIQQLAGNILNNPAEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L +++T + IIF + K V + +L++ +V +H +++Q R +++ FK G I Sbjct: 238 LF-AEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V++++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGNF 356 Query: 358 DAIEKLIEKKV 368 IEK +++ + Sbjct: 357 KNIEKFLDRDI 367 >gi|148978452|ref|ZP_01814926.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3] gi|145962359|gb|EDK27639.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3] Length = 436 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 148/384 (38%), Positives = 221/384 (57%), Gaps = 13/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL L P+V+ + G+ TPIQ +P++L D+ G AQTGTGKT +F+ Sbjct: 11 FADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNH 70 Query: 63 LEK-----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L K GR + PR +I+ PTRELA Q+ ++ E + + AL GG ++ Q Sbjct: 71 LLKTPEHEGR-KPNQPRAIIMAPTRELAIQIYNDAESLVASTGIKAALAYGGESYDKQLG 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 K+E GAD+LI T GRI+D + + +N+I+ +V+DEADRM D+GFI I+ + +P Sbjct: 130 KIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 R +LFSAT++ +Q+++ + NP+ + V T I E F Y K AL Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIKEELF---YPSNEHKMAL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ L++ ++ + IIF N K + L G V + G++ Q+ R KIL F +G Sbjct: 247 LQTLVE-EEWPERAIIFANTKHKCELVWGHLAADGHRVGLLTGDVPQKKREKILEQFTQG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + L+VA+D+AARGL IP V HVFNFD+P+ E+Y+HRIGRTGRAG G + + ++ Sbjct: 306 DVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYA 365 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378 ++ IE+ IE + + D S+L Sbjct: 366 INLPPIEEYIEHAIPVSDYDASAL 389 >gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei] gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei] Length = 749 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 155/436 (35%), Positives = 233/436 (53%), Gaps = 32/436 (7%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + LS +++ A AGY PTPIQ IP+ L D+C A TGTGKTA+FVLP+L Sbjct: 155 VSFEQMNLSRQILKACAGAGYTDPTPIQQACIPVALSGKDICACAATGTGKTAAFVLPIL 214 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R L+L PTRELA QV F K L V L GG+ +AQ L Sbjct: 215 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 274 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DV++ TPGR++DH N + +IE+LV+DEADRML+ F + + L RQ Sbjct: 275 SGPDVVVATPGRLIDHLHNSPNFNLGSIEVLVLDEADRMLEEAFRDQMNELIRLCAENRQ 334 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCAL 234 TLLFSATMT+E+ +++ LQ P +I +N + TA + F+ A + S AL Sbjct: 335 TLLFSATMTEEIDELASMSLQRPVKIFINENTDTALKLRQEFIRIRAGRETDRESMVAAL 394 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + + Q+ N I+F KK+ + L G V + ++ Q R++ LS FK+G Sbjct: 395 VTRTFQT-----NTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKG 449 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++V++DLA+RGLDI V V N ++P + YIHR+GRT RAG+ G++ +LV +E+ Sbjct: 450 EIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEEER 509 Query: 355 KHIDAI----------EKLIEKK-VDWLNGDLSSLNPPLEKID----------IAQHNHA 393 K + I ++L+ + V+ + L +++ID IA+ + A Sbjct: 510 KLLKEIVNSNADRTLKQRLVAPEVVEAYRSRIDDLEETIQQIDEEDRAEKELRIAESSMA 569 Query: 394 RKNNPIPQKSTGFDRR 409 + + + G +RR Sbjct: 570 KTQHALETGEAGNERR 585 >gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL 181] gi|143462290|sp|A1D405|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3 gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL 181] Length = 472 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 217/369 (58%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ ++ A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 113 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK ++ LIL PTRELA Q++ +FE G N+ A+++GG+ +Q+ L + Sbjct: 114 LMEKPQSFF----GLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGK 169 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + ++ LV+DEADR+LDM F P + I ++P R+T Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM+ +++ + L NP R+ V++ T T+ ++ + + K L LL Sbjct: 230 FLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYL--FLPHKHKDIYLVYLL 287 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ ++ IIF + L GF +HG + Q +R+ L F+ + ++ Sbjct: 288 -NEFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDIL 346 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP V V NFD+P ++ Y+HR+GRT RAG+ G A + V + D++ Sbjct: 347 VATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLR 406 Query: 360 IEKLIEKKV 368 IE + KK+ Sbjct: 407 IEGALGKKL 415 >gi|28393424|gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana] Length = 633 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 144/362 (39%), Positives = 207/362 (57%), Gaps = 23/362 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP++L+ D+ AQTG+GKTA+F P+++ Sbjct: 161 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG 220 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + K + +R P +IL PTRELA+Q+ D +++ + V + GG P Q Sbjct: 221 IMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKRFSYQTGVKVVVAYGGTPINQQ 280 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG D+L+ TPGR+ D R ++ M I L +DEADRMLDMGF P I+ I + Sbjct: 281 LRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 340 Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQTLLFSAT E+Q+++ +FL N + V S+ + I + S K Sbjct: 341 MPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQR--VEFVLDSDK 398 Query: 232 CALLQQLLQSQDTMKNGI--------IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 + L LL +Q +NGI +F K+ +L + L GF +IHG+ Q+ Sbjct: 399 RSHLMDLLHAQ--RENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQE 456 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G Sbjct: 457 REVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 516 Query: 344 KA 345 A Sbjct: 517 LA 518 >gi|77457664|ref|YP_347169.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1] gi|77381667|gb|ABA73180.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1] Length = 446 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 216/370 (58%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ +TLIL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+++ N G L + +E+LV+DEADRMLDMGF +Q + P +QT+ Sbjct: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239 LFSAT L+++ L NP+ +++N S +T + A + Q+ ++ L Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQHKEQIV---NWL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +T + I+F N + + L Q + +HG DQ+ R + K+G ++++ Sbjct: 238 LANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + V NFD+P + Y+HRIGRTGRAG G A +L+ D + + Sbjct: 298 VATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSS 357 Query: 360 IEKLIEKKVD 369 IE+ +++ + Sbjct: 358 IERYLKQSFE 367 >gi|315224756|ref|ZP_07866579.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga ochracea F0287] gi|314945384|gb|EFS97410.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga ochracea F0287] Length = 584 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 215/364 (59%), Gaps = 8/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F LGL+ ++ A+ D G+ P+ IQ K IP +L D+ +AQTGTGKTA+F P+L Sbjct: 4 FEQLGLNEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTATFGFPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +++ R+ + LIL PTREL Q+A Y K + V + GG E Q + L+ Sbjct: 64 LIDTDS---RVTQGLILSPTRELCLQIASELRNYAKYLTKVNVVAVYGGASIEEQARSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA +++ TPGR+ D R + +++I V+DEAD ML+MGF I I S P + T Sbjct: 121 KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQEKST 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +E+ K++ F++ P I V T + T++H + ++ + L++L Sbjct: 181 WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA--LKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + ++FC K++ + L + G++ A+HG++ Q R ++ +F+ IQ++V Sbjct: 239 ANPDIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV ++ +P+ E Y HR GRTGRAG+ G + ++ K ++K I I Sbjct: 298 ATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKIKTI 357 Query: 361 EKLI 364 EK+I Sbjct: 358 EKMI 361 >gi|16272370|ref|NP_438583.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae Rd KW20] gi|260580515|ref|ZP_05848343.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW] gi|1174440|sp|P44701|SRMB_HAEIN RecName: Full=ATP-dependent RNA helicase srmB homolog gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd KW20] gi|260092857|gb|EEW76792.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW] Length = 439 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFIRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293] gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM 11293] Length = 542 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 218/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F DLGLS + + A++ G+ +PT IQ +TIP++L ++ AQTGTGKTA+F LP+L Sbjct: 7 FQDLGLSQETLDAIVKKGFEEPTTIQARTIPVMLHSDANIIAQAQTGTGKTAAFGLPLLD 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ R + L+L PTRELA QV++ + + + + + GG + Q ++L++ Sbjct: 67 LVD---PVSRTVQALVLVPTRELAIQVSEEINSFRGSKKVRIVPIYGGQSIDQQLRRLKQ 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G +++ TPGRI+DH NR L + I L++DEAD ML+MGFI ++ I ++TL Sbjct: 124 GVQIVVGTPGRIIDHLNRKTLNLTAISHLILDEADEMLNMGFIDEMEEILKHTNPDKRTL 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D+++K++ ++++ + I V T E + A S K L +++ Sbjct: 184 LFSATMPDKIKKLANDYMEGYELIAVEKEQLTTNLTEQIYFEVKA--SDKFEALCRIIDI 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D+ G++FC K +V + + L +G+ +HG+I Q R + L FK I ++VA Sbjct: 242 EDSF-YGLVFCRTKNDVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINILVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ ++ HV N+ +P E Y+HRIGRTGRAG G A T + + K + I Sbjct: 301 TDVAARGIDVNNLTHVINYSLPQDPEAYVHRIGRTGRAGNEGTAITFITPSEYKRLMFIR 360 Query: 362 KLIEKKV 368 K+ + + Sbjct: 361 KITKTDI 367 >gi|256819312|ref|YP_003140591.1| DEAD/DEAH box helicase domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256580895|gb|ACU92030.1| DEAD/DEAH box helicase domain protein [Capnocytophaga ochracea DSM 7271] Length = 584 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 215/364 (59%), Gaps = 8/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F LGL+ ++ A+ D G+ P+ IQ K IP +L D+ +AQTGTGKTA+F P+L Sbjct: 4 FEQLGLNEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +++ R+ + LIL PTREL Q+A Y K + V + GG E Q + L+ Sbjct: 64 LIDTDS---RVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQARSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA +++ TPGR+ D R + +++I V+DEAD ML+MGF I I S P + T Sbjct: 121 KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQEKST 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +E+ K++ F++ P I V T + T++H + ++ + L++L Sbjct: 181 WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA--LKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + ++FC K++ + L + G++ A+HG++ Q R ++ +F+ IQ++V Sbjct: 239 ANPDIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV ++ +P+ E Y HR GRTGRAG+ G + ++ K ++K I I Sbjct: 298 ATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKIKTI 357 Query: 361 EKLI 364 EK+I Sbjct: 358 EKMI 361 >gi|170758858|ref|YP_001787102.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A3 str. Loch Maree] gi|169405847|gb|ACA54258.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A3 str. Loch Maree] Length = 481 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 217/368 (58%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + LS +++ ++ GY P+ +Q + IPL+L+ D+ ++TG+GKTA+F +P Sbjct: 4 LGFENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I EK + P+ L+L PTRELA Q+ + L + G P Q + L+ Sbjct: 62 -ICEKIELEEKEPQVLVLTPTRELALQIKEEISSIALYRRLRCTAIFGKQPMNLQKRDLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR LDH R L + I+ V+DEAD ML+MGFI ++ + +P R T Sbjct: 121 QRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ ++++ + + ++ NP+ I +N + T TI C+ Y K L Q + Sbjct: 181 MLFSATIPEKIENLCKKYMNNPENININPENITTGTINQCY---YEVEDKDKFFLLQRII 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + N IIFCN ++ V + ++K+GF+ +HG ++Q+ R++ + FKEG Q +V Sbjct: 238 YKEVVDNSIIFCNTRERVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKEGEFQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ I ++ HV N+++P E+Y+HRIGRTGRAG+ G A T + ++ + I Sbjct: 298 CTDVAARGIHIENISHVVNYEMPYEKESYVHRIGRTGRAGKEGVAITFIESNKVRFLKDI 357 Query: 361 EKLIEKKV 368 E IEK++ Sbjct: 358 EDYIEKEI 365 >gi|168042111|ref|XP_001773533.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675235|gb|EDQ61733.1| predicted protein [Physcomitrella patens subsp. patens] Length = 600 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 207/368 (56%), Gaps = 19/368 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L P + + Y KPTP+Q IP+ L D+ AQTG+GKTA+F P++ Sbjct: 147 FAEIDLGPALNENIRRCKYTKPTPVQKYAIPISLHGRDLMACAQTGSGKTAAFCFPIIAG 206 Query: 63 LEK----GR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + GR R +P LIL PTREL+ Q++D +K+ + V + GG P Q Sbjct: 207 IMRNTPPGRPRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPVHNQ 266 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +++ERG D+L+ TPGR+ D R ++ ++ + L +DEADRMLDMGF P I+ I + Sbjct: 267 LREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQMD 326 Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT E+Q+++ +FL N + V S+ + I Y Q K Sbjct: 327 MPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQ--RVEYVQDVDK 384 Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 ++L L+ +Q + ++F KK L L + GF IHG+ Q+ R Sbjct: 385 RSMLMDLIHAQSALAPPGQQTLTLVFVETKKGADALEDWLCRLGFPATTIHGDRSQQERE 444 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 L +F+ G ++VA+D+AARGLDIP V HV NFD+P+ ++Y+HRIGRTGRAG+ G A Sbjct: 445 HALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVA 504 Query: 346 FTLVAKED 353 ++D Sbjct: 505 TAFFNEKD 512 >gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1] gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1] Length = 403 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 146/388 (37%), Positives = 226/388 (58%), Gaps = 12/388 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D +S + + ++ G+ KPT +Q KTIPL+L+ D+ AQTGTGKTA+F +P Sbjct: 11 LSFNDFQISKETLNSIRKMGFKKPTEVQEKTIPLILEGKDIIAQAQTGTGKTAAFGIP-- 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+E + R + L+L PTRELA QV + G+ + + GG Q L+ Sbjct: 69 -IVETVNTKSRKIQALVLVPTRELAIQVTKEIKDIGREKRIFALAVYGGKSIRHQIDFLK 127 Query: 121 RGADVLIC-TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G DV+I TPGRI D R L +N+++I V+DEADRMLDMGFI I+ I P +Q Sbjct: 128 KGKDVVIVGTPGRIKDLIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEFIFEQTPPVKQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 TLLFSATM + +++E FL + I ++ T + I+ A K+ L ++ Sbjct: 188 TLLFSATMPKAIMRLAERFLNDDYEIVKIKPEEVTVDRIKQK--AYRVDTGKEFETLTKI 245 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L +++ K I+F K+ L L ++GF+ AIHG+ Q R ++L +F+ I + Sbjct: 246 L-NENEGKKSIVFTETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRNRIDI 304 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V V+N+ +P E+YIHRIGRTGRAG+ G A ++++ + + + Sbjct: 305 LVATDVAARGLDIKGVDVVYNYSLPRDVESYIHRIGRTGRAGKDGLAISIISTLEDRLFE 364 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKID 386 ++K + +N LS + P+EK++ Sbjct: 365 IVKKKTRSDIQLIN--LS--DKPIEKLE 388 >gi|73992237|ref|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27 (DEAD-box protein 27) isoform 1 [Canis familiaris] Length = 765 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 161/470 (34%), Positives = 251/470 (53%), Gaps = 31/470 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 185 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 244 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + N+T L +GG+ ++Q L Sbjct: 245 ERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALR 304 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 305 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 364 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + FV + L Sbjct: 365 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAAL 424 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 425 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 484 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 485 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 544 Query: 360 IEKL-----------------IEKKVDWLNGDLSS-LNPPLEKIDI----AQHNHARKNN 397 I K K++ + D+ + L E+ ++ AQ N A++ Sbjct: 545 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKR-- 602 Query: 398 PIPQKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447 + ++ G + N+ ++S KE K K+ + +QE D L RG Sbjct: 603 -LLEREKG--KEASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 646 >gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138] gi|74661162|sp|Q6FNK8|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3 gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata] Length = 493 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 216/371 (58%), Gaps = 14/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L L P+++ A + + KPTPIQ + IP L DV G+AQTG+GKTA+F +P+L Sbjct: 75 FAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNK 134 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + +L PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 135 LWEDQQPYY---ACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRK 191 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 ++I TPGR++DH K + N++ LV+DEADR+LDM F P + I ++P R T Sbjct: 192 PHIIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTT 251 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++ K+ L NP + V+ T +T+ + K L LL Sbjct: 252 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL--KNTFLIYLL- 308 Query: 241 SQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ K IIF K N + LC+ LE FS A+HG+++Q R L FK G Sbjct: 309 NEFIGKTVIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRTGALDLFKAGKRS 365 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV++ D++ I Sbjct: 366 ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 425 Query: 358 DAIEKLIEKKV 368 IE+++ KK+ Sbjct: 426 LRIEEVLGKKL 436 >gi|260072689|gb|ACX30586.1| hypothetical protein SUP05_FGYC65E210031 [uncultured SUP05 cluster bacterium] Length = 440 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 143/344 (41%), Positives = 205/344 (59%), Gaps = 9/344 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY TPIQ ++P +L DV G +TG+GKTA+F L +L L+ + ++++L Sbjct: 2 GYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQKLD---VKSFKAQSIVLC 58 Query: 80 PTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA K + +N+ V L GG PF Q LE G +++ TPGRI +H Sbjct: 59 PTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLEHGVHIVVGTPGRIEEHLR 118 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 +G L + +I LV+DEADRMLDMGF I I +P RQTLLFSAT +E+ ++E Sbjct: 119 KGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQTLLFSATFPNEIASIAERV 178 Query: 199 LQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257 +QNP +E PS+ E TI+ F + + AL +LL ++ ++ +IFCN K + Sbjct: 179 MQNPTMVE--APSTHEESTIKQYFYKANSADDRMTAL--RLLLAKHKPESVLIFCNTKID 234 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 ++ L GF AIHG++DQR R + L F ++ ++VA+D+AARGLDI + V Sbjct: 235 TQDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVLVATDVAARGLDIDALDMV 294 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 NF++ + E ++HRIGRTGRAGR G A TL + +DA+E Sbjct: 295 VNFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDALE 338 >gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] Length = 458 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 141/391 (36%), Positives = 226/391 (57%), Gaps = 9/391 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG+ V+C ++ + PT IQ + IPL LQ DV G+A+TG+GKT +F LP+L Sbjct: 24 FKDLGIV-DVLCQTCESLKWKAPTKIQKEAIPLTLQGRDVIGLAETGSGKTGAFALPILQ 82 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R LIL PTRELA Q+++ F+ G + A+++GG+ +Q L + Sbjct: 83 ALLQNPQRYF---ALILTPTRELAFQISEQFQALGSKIGVKTAVIVGGMDMMSQALLLAK 139 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V+I TPGR++DH K + ++ LV+DEADR+L+M F + I ++P R+T Sbjct: 140 KPHVIIATPGRLVDHLENTKGFNLKALKFLVMDEADRILNMDFEVEVDKILKVIPRERRT 199 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATMT ++QK+ L +P ++EV++ T + ++ ++ ++ K L ++ Sbjct: 200 LLFSATMTQKVQKLQRASLHDPVKVEVSSKYQTVDKLQQYYLFIPVKF--KDVYLVSII- 256 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ +IFC N + L + GF+ +HG + Q R+ L+ F+ +++ Sbjct: 257 NEMAGNTFMIFCGTCHNTLRTALLLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSILI 316 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ I Sbjct: 317 STDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 376 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391 E+LI KK+ + + E++ AQ N Sbjct: 377 EQLIGKKLPLFKIEEDEVMTLQERVAEAQRN 407 >gi|299470793|emb|CBN79839.1| DEAD box helicase [Ectocarpus siliculosus] Length = 572 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 135/352 (38%), Positives = 201/352 (57%), Gaps = 11/352 (3%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL--EKGRARVRM 72 A+ AGY PTP Q ++ P+ L D+ +A+TG+GKT F+LP L G + RM Sbjct: 160 ALKAAGYPAPTPTQAQSWPIALSGRDIISVARTGSGKTLGFLLPAFHALLNRPGGCKPRM 219 Query: 73 --PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130 P ++L PTRELA Q+ + K+GK + + GG P Q K ++ G V+I TP Sbjct: 220 GGPYIVVLAPTRELACQINEEATKFGKAAGIRSTTVYGGSPKYPQIKAIQSGVQVVIATP 279 Query: 131 GRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE 190 GR+ D GK+ M N+ L +DEADRMLDMGF P I+ I +P RQTL F+AT E Sbjct: 280 GRLNDIMEMGKINMTNVMTLALDEADRMLDMGFEPQIRTIIDAMPAKRQTLFFTATWPKE 339 Query: 191 LQKVSENFLQNPKRIEVNTP---SSTAETIEHCFVATYAQYSKK-CALLQQLLQSQDTMK 246 +Q+++ +F+ NP I V ++ +H + K LL +L ++ Sbjct: 340 VQRLARDFVTNPVHITVGDAGKLNANKSITQHIHIVDERDKGDKLWELLTKLHENPPKAD 399 Query: 247 NG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304 +G IIF ++K+N L + +GF+V ++HG+ +Q R K++ ++ G ++++VA+D+ Sbjct: 400 HGKTIIFSSKKRNCDKLAQAAWDRGFAVDSLHGDREQWERTKVMDQYRSGEVRMLVATDV 459 Query: 305 AARGLDIPDVGHVFNFDVP-NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 AARGLD+ D+ +V N+D P + ENYIHRIGRT R G AFT D K Sbjct: 460 AARGLDVKDISYVINYDFPVDGVENYIHRIGRTARGNASGDAFTFFTSSDAK 511 >gi|195376137|ref|XP_002046853.1| GJ12262 [Drosophila virilis] gi|194154011|gb|EDW69195.1| GJ12262 [Drosophila virilis] Length = 778 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 213/373 (57%), Gaps = 12/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F + G V+ + G+ KPT IQ + +P+ L D+ +AQTG+GKT ++VLP + Sbjct: 142 IEFEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAV 201 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L+L PTRELA Q+ ++G N + + GG P Sbjct: 202 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQ 257 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 258 QARDLERGVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 317 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ L++SAT E+++++E FL N ++ + + S +A V + K L Sbjct: 318 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIVKL 377 Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 +Q L Q S + IIF KK V + ++ +QG+ CAIHG+ Q+ R +LS+F+ Sbjct: 378 IQLLTQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 437 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL + Sbjct: 438 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSN 497 Query: 354 I-KHIDAIEKLIE 365 K D I+ L E Sbjct: 498 ANKANDLIQVLRE 510 >gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 547 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 211/369 (57%), Gaps = 10/369 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++ G ++ + +AG+ P+PIQ + P+ L DV ++ TG+GKT +F +P + Sbjct: 114 NFSEAGFPDYIMSEIRNAGFNAPSPIQCQAWPMALSGRDVVAVSATGSGKTIAFSIPAMI 173 Query: 62 ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L G P LIL PTRELA Q+ K+G + + + GG+P Q Sbjct: 174 HINAQPLLAPGDG----PIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQ 229 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L RGA+++I TPGR++D K ++ + LV+DEADRMLDMGF P I+ I + Sbjct: 230 IRDLTRGAEIVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIR 289 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTL+FSAT E+Q+++ +L++ ++ V + TA V + + K+ L+ Sbjct: 290 PDRQTLMFSATWPKEVQRLASEYLKDFIQVNVGSLDLTANINITQIVEVCSDFEKRGKLI 349 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + L + +IF K+ +L L + G+ AIHG+ Q+ R +L FK G Sbjct: 350 KHLEKISSESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGR 409 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +M+A+D+A+RGLD+ D+ +V N+D+PN E+YIHRIGRTGRAGR G A++ ++ + K Sbjct: 410 SPIMIATDVASRGLDVKDIAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQSK 469 Query: 356 HIDAIEKLI 364 + K++ Sbjct: 470 LAKELVKIL 478 >gi|223634733|sp|A5DQF1|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3 gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC 6260] Length = 475 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 138/366 (37%), Positives = 211/366 (57%), Gaps = 13/366 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++L L P+++ A+ Y KPTPIQ IP L+ D+ G+AQTG+GKTA+F +P+L Sbjct: 66 FSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 125 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + R L+L PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 126 LWEAQ---RPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRK 182 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +L+ TPGRI+DH K + +++ LV+DEADR+LDM F P + I ++P R T Sbjct: 183 PHILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTY 242 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT+++ K+ L P ++ V+ TA+ + + Y K L LL + Sbjct: 243 LFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGY--KNTFLIHLL-N 299 Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + K+ I+F C + L L GFS +HG + Q R+ L+ FK G + Sbjct: 300 EFMGKSIIVFTRTCAHTQRSTLLARIL---GFSAVPLHGQLTQSQRLGSLNKFKSGKANI 356 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARGLDIP V V N+D+P ++ YIHR+GRT RAG+ GK+ +LV + D++ Sbjct: 357 LIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYL 416 Query: 359 AIEKLI 364 IE ++ Sbjct: 417 RIESVL 422 >gi|212710675|ref|ZP_03318803.1| hypothetical protein PROVALCAL_01741 [Providencia alcalifaciens DSM 30120] gi|212686756|gb|EEB46284.1| hypothetical protein PROVALCAL_01741 [Providencia alcalifaciens DSM 30120] Length = 445 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 209/368 (56%), Gaps = 4/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ + GY +PT IQ IP + DV G A TGTGKTA+F+LP + Sbjct: 6 FSELELDESLITALTNKGYERPTAIQEAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD ++ + +L VA + GG+ + + Sbjct: 66 LLDFPRKKSGPPRVLILTPTRELAMQVADQAKELCAHNHLDVATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +EIL++DEADRMLDMGF I+ I + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAHDIETIAGETRWRKQTM 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ E ++ +E L++P I+ + I+ F K ALL LL+ Sbjct: 186 LFSATLEGEAIRDFAERLLEDPIEIDAEPSRRERKKIQQ-FYYRADTLEHKTALLCHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D K+ I+F +++ V + L G C + G + Q R + + G ++++V Sbjct: 245 QEDVTKS-IVFVRKRERVREVVQWLRDAGIEPCYLEGEMVQAKRNEAVRRLVTGQVKVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDI +V HVFNFD+P A+ Y+HRIGRTGRAGR G A +LV D + I Sbjct: 304 ATDVASRGLDIENVSHVFNFDLPRTADVYLHRIGRTGRAGRKGTALSLVEAHDFPLLGKI 363 Query: 361 EKLIEKKV 368 + IE + Sbjct: 364 TRYIEDPI 371 >gi|114321219|ref|YP_742902.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227613|gb|ABI57412.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 438 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 215/373 (57%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F LGL ++ + AG+ TPIQ T+P L+ D+ G AQTGTGK+A+F+L Sbjct: 11 FDTLGLHDALMDGIKRAGFEYCTPIQAATLPKALEGRDIAGQAQTGTGKSAAFLLAAMHR 70 Query: 59 -MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 M +E+G+ P TLIL PTRELA Q+ + + G+ L A + GG +EAQ + Sbjct: 71 LMTVPVEEGK---EGPWTLILAPTRELALQIHRDALQLGRYTGLKCAAIYGGTGYEAQRQ 127 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 +L+ G D++I TPGR++D F + + +IE++++DEADRM D+GFI I+ + +P Sbjct: 128 QLQEGVDIIIGTPGRVIDFFKQRIFHLKHIEVVILDEADRMFDLGFIADIRYLMRRMPEP 187 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R +LFSAT++ + +++ L +P+ + + + TA+ + + +K LL Sbjct: 188 SKRMNMLFSATLSHRVMELAYEHLNDPEVVRIESEQITADKVRQKLY--HVSKDEKIPLL 245 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ ++ M IIF N K+ + L I G+I Q+ R +L F++G Sbjct: 246 LGLIRQEEAMNRSIIFVNTKRAADRVTGYLLGNDIEAAVISGDIPQKKRESLLKRFQDGE 305 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++ +VA+D+AARGL I DV HV N+D+P E+Y+HRIGRT RAG G A + +E + Sbjct: 306 LRFLVATDVAARGLHIEDVSHVINYDLPQDPEDYVHRIGRTARAGASGDAISFACEEYVF 365 Query: 356 HIDAIEKLIEKKV 368 + IE IE+++ Sbjct: 366 SLPDIESFIEQRI 378 >gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides finegoldii DSM 17565] gi|260622430|gb|EEX45301.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides finegoldii DSM 17565] Length = 421 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 217/371 (58%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ + IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +I+ PTRELA Q+ E + ++ + GG I FE Q K Sbjct: 61 NKLSEGNHPEDAINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ L NP I++ + I+ +V Q K +++ Sbjct: 181 RQTVMFSATMPAKIQQLANTILNNPSEIKLAVSKPAEKIIQAAYVCYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + + + IIF + K V + +L +V +H +++Q R ++ FK G + Sbjct: 238 LF-ADEVPERVIIFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKAGRVN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V NFDVP+ +E+Y+HRIGRT RA G A T V++++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVSEKEQSNF 356 Query: 358 DAIEKLIEKKV 368 +IE +EK + Sbjct: 357 KSIENFLEKDI 367 >gi|168053931|ref|XP_001779387.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669185|gb|EDQ55777.1| predicted protein [Physcomitrella patens subsp. patens] Length = 741 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 139/358 (38%), Positives = 213/358 (59%), Gaps = 8/358 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F DLG ++ A+ GY +PTPIQ ++ P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 236 FEDLGFDASLMGAISKQGYERPTPIQCQSCPIVLSGRDLIGIAKTGSGKTAAFVLPMMVH 295 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P +I PTRELA Q+ +K+ K + + ++ + GG+ Q K+L+ Sbjct: 296 IMDQPELGKGEGPIGVICAPTRELAQQIYSEAKKFAKVHGIRISGVYGGMSKFEQFKELK 355 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +V++ TPGR++D L M+ LV+DEADRM D+GF P I++I + RQT Sbjct: 356 AGCEVVVATPGRLIDMIKMKALSMHRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 415 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++++ L +P R+ V S E I + K LL +L Sbjct: 416 LLFSATMPKRVERLAREILTDPIRVTVGEIGSANEDITQVVTVLPSDAEKTPWLLDRL-- 473 Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 Q + +G ++F + K V L + + GF V A+HG+ DQ +RM++L FK G + Sbjct: 474 -QPFVDDGDVLVFASTKLRVEELEGKISEAGFKVAALHGDKDQATRMEVLQKFKNGIYHI 532 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 +VA+D+AARGLDI + V N D+ ++++HRIGRTGRAG + G A TLV ++ + Sbjct: 533 LVATDVAARGLDIKSIKTVVNVDIARDMDSHVHRIGRTGRAGDKDGVAHTLVTGKEAR 590 >gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7] gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna binding domain protein [Pseudomonas aeruginosa PA7] Length = 458 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 145/392 (36%), Positives = 224/392 (57%), Gaps = 13/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LS ++ + GY + TPIQ +++PL+LQ D+ A+TG+GKTA+F L +L Sbjct: 6 FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGRDLIAQAKTGSGKTAAFGLGLLAP 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + L+L PTRELA QVA + + N+ V L GG+P+ Q LE Sbjct: 66 LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI +H +G L+++ + LV+DEADRMLDMGF I I +P RQTL Sbjct: 123 GAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D ++K+++ F+++P++++V + + ++ + F Q L Q + Sbjct: 183 LFSATYPDGIEKLAKAFMRDPQQVKVESLHTDSQIEQRFFEIDPKQRMDAVVRLLQHFRP 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + FC ++ L +L+ S A+HG+++QR R ++L+ F + ++VA Sbjct: 243 QSC----VAFCQTRQQCQELADALKAHRISALALHGDLEQRERDQVLTVFANRSCTVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N ++ E +IHRIGR+GRAG G A +LVA + AIE Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358 Query: 362 KLIEKKVDW-----LNGDLSSLNPPLEKIDIA 388 L ++ + W L + L PP+ + IA Sbjct: 359 DLQKQPLAWYALGQLKANPEPLLPPMSTLCIA 390 >gi|297817170|ref|XP_002876468.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp. lyrata] gi|297322306|gb|EFH52727.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp. lyrata] Length = 639 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 212/390 (54%), Gaps = 23/390 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP++ D+ AQTG+GKTA+F P+++ Sbjct: 139 FAEIDLGEVLNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISG 198 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + K + R P +IL PTRELA Q+ D K+ + V + GG P Q Sbjct: 199 IMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQ 258 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174 ++LERG D+L+ TPGR+ D RG++ + ++ L +DEADRMLDMGF P I+ I + Sbjct: 259 IRELERGVDILVATPGRLNDLLERGRVSLQMVKFLALDEADRMLDMGFEPQIRKIVQQMD 318 Query: 175 ---PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 P RQT+LFSAT E+Q+++ +FL N + V S+ + I + S K Sbjct: 319 MPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQ--RVEFVHDSDK 376 Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 + L LL +Q N ++F KK +L + L GF IHG+ Q+ R Sbjct: 377 RSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQERE 436 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG G A Sbjct: 437 VALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLA 496 Query: 346 FTLVAKEDIKHIDAIEKLIEKK----VDWL 371 + + +L+++ DWL Sbjct: 497 TAFFNDNNTSMAKPLAELMQEANQEVPDWL 526 >gi|251789631|ref|YP_003004352.1| ATP-dependent RNA helicase DbpA [Dickeya zeae Ech1591] gi|247538252|gb|ACT06873.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591] Length = 457 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 218/370 (58%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA+L P L + GY+ TPIQ +P +L DV A+TG+GKTA+F L +L Sbjct: 4 FAELNALPAAQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ GR + +L+L PTRELA QVA+ + + N+ V L GG+PF Q L Sbjct: 64 HLDAGRFNTQ---SLVLCPTRELADQVANELRRLARGMPNIKVLTLCGGVPFGLQRDSLT 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR+LDH + + ++++ LV+DEADRMLDMGF I + + VP QT Sbjct: 121 HAPHVIVATPGRLLDHLKKETVSLDDLRTLVLDEADRMLDMGFADAIDEVIAQVPTPCQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + + +S ++P IE++T +E F S K LLQ+LL Sbjct: 181 LLFSATWPEAIAAISRRIQRDPLIIEIDTVDEL-PAVEQQFYEV--SRSGKLDLLQKLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++FCN KK+ + +L SV A+HG+++QR R + L F G+ +++V Sbjct: 237 SREQPASCVVFCNTKKDCQAVYEALTNSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N+++ E ++HRIGRT RAG G A +L A E+ + +A+ Sbjct: 297 ATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANAL 356 Query: 361 EKLIEKKVDW 370 E++++ K++W Sbjct: 357 EEMLKMKLNW 366 >gi|238750395|ref|ZP_04611896.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380] gi|238711326|gb|EEQ03543.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380] Length = 438 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 137/354 (38%), Positives = 203/354 (57%), Gaps = 4/354 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L +++ A+ D GY +PT IQ IP + DV G A TGTGKTA+F+LP L Sbjct: 5 NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + PR LIL PTRELA QVAD + K+ L +A + GG+ + + Sbjct: 65 HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D+++ T GR+L + +E L++DEADRMLDMGF I+ I + + +QT Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ E +++ +E L P +E + + I+ + K ALL LL Sbjct: 185 LLFSATLEGEAIREFAERILDEPVELEADPSRRERKKIQQWYYRA-DNIEHKTALLVHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + K+ IIF ++ V L L + G + + G + Q R + + +G + ++ Sbjct: 244 KQPEVQKS-IIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+A+RGLDI D+ HVFNFD+P A+ Y+HRIGRTGRAGR G A +LV D Sbjct: 303 VATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHD 356 >gi|118097584|ref|XP_414629.2| PREDICTED: similar to Prp5-like DEAD-box protein [Gallus gallus] Length = 1043 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 144/427 (33%), Positives = 236/427 (55%), Gaps = 15/427 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ A+ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 378 WVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRH 437 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 438 IMDQRALEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 493 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 494 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 553 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 V RQT++FSAT ++ ++ L P ++V S +E V + +K Sbjct: 554 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQ-HVIVIEEENKFLK 612 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ L Q+ + IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 613 LLELLGHYQEK-GSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKN 671 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 672 GTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQ 731 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 ++ I K +E + + DL L ++ A+ +K++ K FD ++ Sbjct: 732 ARYAGDIIKALELSGNPIPADLEKLWADFKEQQKAEGKLIKKSSGFSGKGFKFDETEQAL 791 Query: 414 SSQKSHI 420 ++++ + Sbjct: 792 ANERKKL 798 >gi|307131092|ref|YP_003883108.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] gi|306528621|gb|ADM98551.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] Length = 457 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 144/370 (38%), Positives = 218/370 (58%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA+L + P L + GY+ TPIQ +P +L DV A+TG+GKTA+F L +L Sbjct: 4 FAELNVLPAEQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ G+ + +L+L PTRELA QVA+ + + N+ V L GG+PF Q L Sbjct: 64 QLDAGQFNTQ---SLVLCPTRELADQVANELRRLARYLPNIKVLTLCGGVPFSIQRDSLI 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH + + ++ ++ LV+DEADRMLDMGF I + + VP RQT Sbjct: 121 HAPHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIAHVPAQRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT D + +S ++P I ++T IE F S K LLQ+LL Sbjct: 181 LLFSATWPDAIAAISHRIQRDPLTIAIDTVDEL-PAIEQQFYEV--SRSGKIDLLQKLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++FCN KK+ + +L SV A+HG+++QR R + L F G+ +++V Sbjct: 237 SREQPASCVVFCNTKKDCQAVYDALTDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N+++ E +IHRIGRT RAG G A +L A E+ + +A+ Sbjct: 297 ATDVAARGLDIKALEMVINYELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANAL 356 Query: 361 EKLIEKKVDW 370 E+++ K++W Sbjct: 357 EEMLNMKLNW 366 >gi|237727904|ref|ZP_04558385.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2] gi|226910353|gb|EEH96271.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2] Length = 422 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 215/373 (57%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P T Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTT 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ I+F N K ++ SL G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|301154759|emb|CBW14222.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1] Length = 419 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 150/404 (37%), Positives = 227/404 (56%), Gaps = 15/404 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FADL L P V A+ D G+ TPIQ ++P+ LQ DV G AQTGTGKT +F+ Sbjct: 11 FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + PR LIL PTRELA Q+ + E + L AL GG ++ Q K +E Sbjct: 71 LLTHQPNFATNQPRALILAPTRELAVQINHDAELLARTSGLRTALAYGGDGYDKQLKAIE 130 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TR 178 G D+LI T GR++D+ +G + +++I+++V+DEADRM D+GFI I+ + P R Sbjct: 131 AGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQER 190 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237 T+LFSAT++ ++++++ + +P+ IE+ T I E F Y K LL Sbjct: 191 LTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELF---YPSNEDKIPLLLT 247 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ ++ + I+F N K + L G V + G++ Q+ R+ +L F +G + Sbjct: 248 LME-EEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELD 306 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGL I DV HVFNFD+P+ E+Y+HRIGRTGRAG G + + +E ++ Sbjct: 307 ILVATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNL 366 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 AIE+ I + D +SL + K + K NP PQ Sbjct: 367 PAIEEYIGHSIPVSQYDPNSLISDIPK------PYRLKRNPTPQ 404 >gi|260596009|ref|YP_003208580.1| ATP-dependent RNA helicase RhlB [Cronobacter turicensis z3032] gi|260215186|emb|CBA27017.1| ATP-dependent RNA helicase rhlB [Cronobacter turicensis z3032] Length = 421 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 151/389 (38%), Positives = 217/389 (55%), Gaps = 13/389 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P VV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E K L + L GG ++ Q K Sbjct: 71 LLSHPAAEDRQVNQPRALIMAPTRELAVQIHSDAEPLAKATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAA 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 Q L LFSAT++ +++++ + N + +EV T I+ Y +K LLQ Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F G I Sbjct: 249 TLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDI 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E + Sbjct: 308 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN 367 Query: 357 IDAIEKLIEKK--VDWLNGD--LSSLNPP 381 + AIE I V N D LS L PP Sbjct: 368 LPAIETYIGHSIPVSKYNPDALLSELPPP 396 >gi|119946353|ref|YP_944033.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37] gi|119864957|gb|ABM04434.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 462 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 216/367 (58%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L ++ + GY TPIQ +++P VL DV +TG+GKTA+F L +L Sbjct: 6 FSTLPLHTDLLHNLESLGYHVMTPIQAQSLPHVLAGKDVIAQGKTGSGKTAAFGLGLLEK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R R++ +LIL PTRELA QV + + +N+ V L GG+PF Q LE Sbjct: 66 LSVKRFRIQ---SLILCPTRELADQVGKELRRLARTIHNIKVLTLCGGVPFGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI DH +G L ++++E+LV+DEADRMLDMGF I I P RQTL Sbjct: 123 GAHIIVGTPGRIEDHLRKGTLRLDDLEVLVLDEADRMLDMGFQASIDAIIDQAPKKRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++ +++ + +P ++ + + +H + +Q + L+ LLQ Sbjct: 183 LFSATFPEKINNIAKRIMTDPIMVKAESKHDDSVIAQHFYKVENSQ--DRMIALRLLLQK 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ ++FCN KK V + L +GFS A+HG+++Q+ R + L F + ++VA Sbjct: 241 YQP-ESSVVFCNTKKEVQEVADELANRGFSALALHGDLEQKDRDQALIRFANKSASILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI ++ VFN+ + + E ++HRIGRTGRAG G AF+ + ++ + +E Sbjct: 300 TDVAARGLDIDNLSAVFNYHIAHDQELHVHRIGRTGRAGNKGLAFSFYSDKEHHKVSVLE 359 Query: 362 KLIEKKV 368 +++ + Sbjct: 360 DYLDRSI 366 >gi|331005214|ref|ZP_08328607.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989] gi|330420957|gb|EGG95230.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989] Length = 462 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 140/361 (38%), Positives = 213/361 (59%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L+ ++ + Y + T IQ +++P ++ DV A+TG+GKTA+F L ML Sbjct: 6 FQSLSLNTSLLENLKSLQYKEMTEIQAQSLPPMIAGQDVIAQAKTGSGKTAAFGLAMLNK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ R RV+ +L+L PTRELA QVA + G+ +N+ V L GG PF Q LE Sbjct: 66 LQVKRFRVQ---SLVLCPTRELADQVAKEIRRLGRGIHNIKVLTLCGGAPFGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI +H +G L ++++ V+DEADRMLDMGF P + I +P RQTL Sbjct: 123 GAHIVVGTPGRIEEHLRKGTLRLDDVTTFVLDEADRMLDMGFQPSLDAIVDYLPAKRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++Q +++ + P R+ V T + +IE F A S+ AL QLL Sbjct: 183 LFSATYPEQIQLIAKRIMHEPIRVTVETAHDDS-SIEQHFYALEDGRSRTEAL--QLLLL 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++FCN K+ + L + GF+ A++G+++Q+ R + L F + ++VA Sbjct: 240 TYRPNSAVVFCNTKRETQEVADELARMGFAAVALNGDMEQKMRDQTLVRFANNSASILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI D+ VFN+ + + + HRIGRTGRAG G AFTL ++ ++ +E Sbjct: 300 TDVAARGLDIDDLDAVFNYQLSREIDVHTHRIGRTGRAGSKGHAFTLYTSKERYKVEMLE 359 Query: 362 K 362 K Sbjct: 360 K 360 >gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica] Length = 781 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 232/409 (56%), Gaps = 20/409 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L L P + +L A Y +PTPIQ IP +L+ D+ AQTG+GKTA+F++P++ Sbjct: 185 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 244 Query: 62 IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 L ++ ++ P+ LIL PTRELA Q+ +K+ N L ++ GG +Q Sbjct: 245 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQ 304 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SL 173 ++++ G +L+ TPGR++D + K+ + + +V+DEADRMLDMGF P I+ I S Sbjct: 305 IREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESN 364 Query: 174 VP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 +P RQTL+FSAT E+QK++ +FL N + V ST+++I+ + Y +K Sbjct: 365 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEII--YMTDVEK 422 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 L+ + + +IF KK +L L +G+ V +IHG+ Q R LS F Sbjct: 423 LNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMF 482 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL-VA 350 + G ++VA+ +AARGLDIP+V HV N+D+P+ E Y+HRIGRTGR G HG+A + V Sbjct: 483 RNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVD 542 Query: 351 KEDIKHIDAIEKLIEKKV---DWLNGDLSSLNPPLEKIDIAQHNHARKN 396 K + ID ++ L E W LS+L L++ N+ R N Sbjct: 543 KNNNIAIDLVDLLKEANQIVPQW----LSALADELKRNSTMGSNNKRHN 587 >gi|15231074|ref|NP_191416.1| DEAD box RNA helicase, putative [Arabidopsis thaliana] gi|75335836|sp|Q9M2F9|RH52_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 52 gi|6735374|emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|15146288|gb|AAK83627.1| AT3g58570/F14P22_160 [Arabidopsis thaliana] gi|21593710|gb|AAM65677.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|27363456|gb|AAO11647.1| At3g58570/F14P22_160 [Arabidopsis thaliana] gi|332646279|gb|AEE79800.1| DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana] Length = 646 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 211/390 (54%), Gaps = 23/390 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP++ D+ AQTG+GKTA+F P+++ Sbjct: 148 FAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISG 207 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + K + R P +IL PTRELA Q+ D K+ + V + GG P Q Sbjct: 208 IMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQ 267 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV- 174 ++LERG D+L+ TPGR+ D RG++ + + L +DEADRMLDMGF P I+ I + Sbjct: 268 IRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMD 327 Query: 175 ---PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 P RQT+LFSAT E+Q+++ +FL N + V S+ + I + S K Sbjct: 328 MPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQ--RVEFVHDSDK 385 Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 + L LL +Q N ++F KK +L + L GF IHG+ Q+ R Sbjct: 386 RSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQERE 445 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG G A Sbjct: 446 VALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLA 505 Query: 346 FTLVAKEDIKHIDAIEKLIEKK----VDWL 371 + + +L+++ DWL Sbjct: 506 TAFFNDNNTTMAKPLAELMQEANQEVPDWL 535 >gi|304408310|ref|ZP_07389958.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] gi|304342779|gb|EFM08625.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] Length = 482 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 144/419 (34%), Positives = 232/419 (55%), Gaps = 25/419 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GLS + A+ + +PT +Q + IP+VLQ D+ +QTG+GKTA++ +P+ + Sbjct: 6 FVQYGLSEDIGRALEGLAFNEPTEVQREVIPVVLQGRDIVVKSQTGSGKTAAYGIPLCEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + P+ LIL PTRELA QV ++ G+ + A + G PF Q +L++ Sbjct: 66 VSWEENK---PQVLILTPTRELAVQVKEDLTNIGRFKRVKAAAIYGKQPFHIQKLELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++ TPGR+LDH +G ++ + LVIDEAD ML+MGFI ++ I +P R T+L Sbjct: 123 THIVAGTPGRVLDHIEKGTFPLSKLAYLVIDEADEMLNMGFIDQVEAIIKRLPAERVTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++ ++ N++++P +E+ T + IEH AQ A +LLQS Sbjct: 183 FSATLPEDVDQLRRNYMRDPVSVEIQATGLTTDAIEH------AQIKVSEADKLELLQSI 236 Query: 243 DTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++N IIFC ++ V L L + + IHG + Q R++++ F+ G + + Sbjct: 237 TIVENPDSCIIFCRTQEGVNELFRKLARLEYPCDRIHGGMAQEERLEVMGAFRRGQFRYL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DI ++ HV N+D P E Y+HR GRTGRAG+ G+A T V D + Sbjct: 297 IATDVAARGIDIDNITHVINYDFPLDKEGYVHRTGRTGRAGKRGQAITFVTPSDEGRLAE 356 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 +E+ I ++ + P E ++ A+ RK N + T R KK+ S+Q S Sbjct: 357 VEQYIGFRIRRIE------EPTAEAVESARDAFERKIN----RQT---RLKKDKSAQVS 402 >gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM 13479] gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM 13479] Length = 561 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 217/369 (58%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L +++ AV D G+ + +PIQ + IP+ ++ D+ G AQTGTGKTA+F +P+L Sbjct: 6 FDELQLDERILRAVADMGFEEASPIQAQAIPVQMEGRDIIGQAQTGTGKTAAFGIPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 +K + + + + L PTRELA QVAD + K + + V + GG Q + L+ Sbjct: 64 -QKVDPKSKKLQAIALCPTRELAIQVADEIRRLAKYMHGVKVLPIYGGQDIVKQIRSLKD 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++I TPGR++DH R + ++I +V+DEAD ML+MGF+ ++ I S +P RQT+ Sbjct: 123 GTQIIIGTPGRVMDHMRRKTVKFDHIHTVVMDEADEMLNMGFLEDMETILSQLPEDRQTV 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 +FSATM + ++ F + P ++V T + + V + C LL Sbjct: 183 MFSATMPQAIADIAHKFQKEPVTVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMY- 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 K ++FCN KK V L +L+ +G+ +HG++ Q R +++++F+ G ++ Sbjct: 242 ----APKLSVVFCNTKKGVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNGRTDIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ DV VFN+D+P E Y+HRIGRTGRAGR G AF+ V +++ + Sbjct: 298 VATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRD 357 Query: 360 IEKLIEKKV 368 I++ + K+ Sbjct: 358 IQRYCKTKI 366 >gi|326430346|gb|EGD75916.1| ATP-dependent RNA helicase RhlE [Salpingoeca sp. ATCC 50818] Length = 2578 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/360 (38%), Positives = 203/360 (56%), Gaps = 16/360 (4%) Query: 11 KVVC-AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69 +V+C A D GY +PTP+Q IP L+ D+ GIA+TG+GKTA+F LP++ L R R Sbjct: 2163 EVLCQACEDVGYRRPTPVQEAAIPPALEGKDIVGIAKTGSGKTAAFALPVMHSLINARPR 2222 Query: 70 VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129 R L++ PTRELA Q+ F+ G L ALL+GG+ + Q +L + VLI T Sbjct: 2223 ERRFHALVMAPTRELAQQIEGEFKALGATIGLKTALLVGGLSLQQQQDRLSQNPHVLIAT 2282 Query: 130 PGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188 PGRIL H R +NN++ L++DEADRML F I + +P R LFSAT Sbjct: 2283 PGRILHHLERTNGFKLNNVKFLILDEADRMLTPEFEREIDQLLGHIPKRRTNFLFSATSN 2342 Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETI-EHC------FVATYAQYSKKCALLQQLLQS 241 D+++ + L+NP I++ T +T+ +HC F TY + L +Q LQ+ Sbjct: 2343 DKVKHLMHAVLRNPVHIKIKHKVKTVDTLDQHCVFLPLQFKETYLVW----FLQRQGLQA 2398 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ IIFC K+ + L L K G +HGN+ Q R+ L+ FK ++V Sbjct: 2399 DSSV---IIFCETKRATMKLVLMLRKLGLRATCLHGNMSQEKRIGALARFKTHKDNVLVC 2455 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +++ ARGLDI V V N+D+P ++ Y+HR+GRT RAGR G+A T V + D+ + IE Sbjct: 2456 TNVGARGLDIQGVELVINYDLPKTSDVYLHRVGRTARAGRSGRAVTFVTQYDVPYFKEIE 2515 >gi|315633344|ref|ZP_07888635.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393] gi|315477844|gb|EFU68585.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393] Length = 442 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 213/366 (58%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FAD L+P+++ A+ GY +PT IQ +TIP ++ DV G A TGTGKTA+F+LP + Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGFDVLGSAPTGTGKTAAFLLPAIQH 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVA+ E+ L++A + GG+ ++ + + Sbjct: 67 LLDYPRRKPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNHGEIFNK 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + +EIL+ DEADRML MGF + I++ + +QTL Sbjct: 127 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTL 186 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ D L+ ++ L P +I+ + I+ + + K LL + ++ Sbjct: 187 LFSATLEGDLLEDFADRTLNEPVKIDAEPSRRERKKIQQWYYHADSN-EHKFKLLARFIE 245 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ + GI+F ++++V L +L K+G + G + Q R + K G + ++V Sbjct: 246 -QEQVSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 304 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ++D++ARG+DI DV H+ NFD+P A+ Y+HRIGRT RAG+ G A + V D + + I Sbjct: 305 STDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGKI 364 Query: 361 EKLIEK 366 ++ ++ Sbjct: 365 KRYTQE 370 >gi|42573778|ref|NP_974985.1| ethylene-responsive DEAD box RNA helicase, putative (RH30) [Arabidopsis thaliana] gi|108861888|sp|Q8W4R3|RH30_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 30 gi|110741550|dbj|BAE98724.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|332010323|gb|AED97706.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana] Length = 591 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 143/384 (37%), Positives = 215/384 (55%), Gaps = 15/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D ++ A+ G+ +PTPIQ + P+ L+ D+ GIA+TG+GKT +++LP L Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226 Query: 63 LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + A+ R+ P LIL PTRELA Q+ + K+G + + GG P Q + Sbjct: 227 VS---AQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 283 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 284 DLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPD 343 Query: 178 RQTLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHC--FVATYAQYSKKCAL 234 RQTLL+SAT E++ ++ FL++P K I +T ++I V T +Y++ L Sbjct: 344 RQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 403 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L+QL+ + IF K+ + L G+ AIHG+ Q R ++L+ FK G Sbjct: 404 LKQLMDGSKIL----IFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSG 459 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M A+D+AARGLD+ D+ V N+D PN E+YIHRIGRTGRAG G AFT ++ Sbjct: 460 RSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNA 519 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378 K + K++++ + LS+L Sbjct: 520 KFARELVKILQEAGQVVPPTLSAL 543 >gi|289671093|ref|ZP_06492168.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 446 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 225/375 (60%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L P ++ + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 9 LTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVTVV 68 Query: 61 TILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q Sbjct: 69 NRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 TRQTLLFSAT++ + +++ + P+++ V T + TA + + +K Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDEEKQT 246 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++ Sbjct: 247 LLLGLLSRSEGART-MVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQK 305 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 366 AISLPDIEAYIEQKI 380 >gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM 16294] gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM 16294] Length = 452 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/363 (38%), Positives = 217/363 (59%), Gaps = 10/363 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA L LSP+++ + GY + TPIQ +++P +L+ D+ A+TG+GKTA+F + +L Sbjct: 1 MNFATLPLSPQMLQTIESLGYKEMTPIQAQSLPSILEGRDIIAQAKTGSGKTAAFGIGLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 L + RV+ +L+L PTRELA QVA + + +N+ + +L GG F Q L Sbjct: 61 HHLNVKKFRVQ---SLVLCPTRELADQVAKELRRLARFQHNIKILMLSGGESFGRQLGSL 117 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 A +++ TPGR+L H N+ L ++N+ LV DEADRMLDMGFI I+++ + VP RQ Sbjct: 118 AHQAHIIVGTPGRVLKHLNKESLELSNLNTLVFDEADRMLDMGFIEEIESVLAFVPKERQ 177 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT DE+ ++S+ N ++ + A+ +++ V + + + K L ++L Sbjct: 178 TLLFSATYDDEILQISKRIQNNALHVK-----TAAQEVQNKIVQEFYETNDKVDTLIKIL 232 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +N I+F N K L SL + AIHG+++Q R +L F + ++ Sbjct: 233 ANYKP-ENVIVFTNTKLEAKELAESLVQNKIDALAIHGDLEQYERNDVLVQFANKSCPVL 291 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI D+ V N+D+P+ E Y HRIGRTGRAG G A TL + + + I+ Sbjct: 292 VATDVAARGLDIKDLSMVVNYDLPHSMETYTHRIGRTGRAGAEGIAVTLYNEYEAQKIEP 351 Query: 360 IEK 362 E+ Sbjct: 352 YEE 354 >gi|91788228|ref|YP_549180.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] gi|91697453|gb|ABE44282.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] Length = 422 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 204/369 (55%), Gaps = 10/369 (2%) Query: 1 MDFADLGLSPKVVCAVL----DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFV 56 M F+ LG SP ++ A L D GY PT IQ + IP +L DV G AQTG+GKTA+F Sbjct: 1 MPFSSLGFSPALLPAFLRAIGDKGYRAPTAIQSQAIPAILLGRDVVGSAQTGSGKTAAFA 60 Query: 57 LPMLTILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFE 113 LPML L P R LIL PTRELAAQV + + K + VA++ GG+ Sbjct: 61 LPMLQQLANAPTGTPRPTRGLILVPTRELAAQVGEAIAGFAKYLPQRVKVAVVFGGVSIN 120 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L GAD+++ TPGR+LD L ++ + LV+DEADR+LD+GF + I L Sbjct: 121 PQMMNLRGGADIVVATPGRLLDLLEHNALKISEVSTLVLDEADRLLDLGFGEELGRILEL 180 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +P RQ L FSAT ++ ++E+ L +P RIEV T I + A S++ Sbjct: 181 LPPRRQNLFFSATFPPAIEVLAESMLHDPLRIEVQAVPETKPDIAQRAIQVDA--SRRTQ 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ L+Q++ + ++F K + L K HG + Q R ++L +F+ Sbjct: 239 LLRHLVQTEK-WERALVFVATKHAAEIVADKLRKVHIEAEPFHGELSQGKRTQVLQDFRI 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +Q++VA+D+AARG+DI + V N+D+P A +Y HRIGRTGRAG G A + V+ Sbjct: 298 KAVQVVVATDVAARGIDIAQMPVVVNYDLPRSAVDYTHRIGRTGRAGESGLAVSFVSAGT 357 Query: 354 IKHIDAIEK 362 H IEK Sbjct: 358 EAHFKLIEK 366 >gi|326928709|ref|XP_003210518.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Meleagris gallopavo] Length = 1027 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 144/427 (33%), Positives = 236/427 (55%), Gaps = 15/427 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ A+ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 370 WVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRH 429 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 430 IMDQRALEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 485 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 486 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 545 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 V RQT++FSAT ++ ++ L P ++V S +E V + +K Sbjct: 546 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQ-HVIVIEEENKFLK 604 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ L Q+ + IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 605 LLELLGHYQEK-GSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKN 663 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 664 GTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQ 723 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 ++ I K +E + + DL L ++ A+ +K++ K FD ++ Sbjct: 724 ARYAGDIIKALELSGNPIPADLEKLWADFKEQQKAEGKLIKKSSGFSGKGFKFDETEQAL 783 Query: 414 SSQKSHI 420 ++++ + Sbjct: 784 ANERKKL 790 >gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436] gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436] Length = 528 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 214/374 (57%), Gaps = 16/374 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G++ ++ A+ G P PIQ T+P+ L D+ G A+TGTGKT F LP L Sbjct: 44 FADFGINTEICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTLGFGLPTLMK 103 Query: 63 LEKGRARVRM---------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 + G A + P+ +++ PTREL QVA + K ++ + + GG FE Sbjct: 104 VH-GPASAKYATEVHYQGHPQAMVIVPTRELCKQVAADLRAAAKQTSVRITEIYGGAAFE 162 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L +G D+++ TPGR++D R L ++ + +V+DEAD MLD+GF+P ++ + S Sbjct: 163 PQIDALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFLPDVEILLSR 222 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTAETIEHCFVATYAQYSK 230 VP TRQT+LFSATM E+ ++ +++ P I E + +T +T++ +A Sbjct: 223 VPQTRQTMLFSATMPGEIVALARRYMKQPTHIRAQEADDQGATVKTVKQVIYRCHAL--N 280 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K ++ ++LQ+++ +IF K+ L L +GF+V ++HG++ Q +R + + Sbjct: 281 KIEVVARILQARE-RGLAVIFTKTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRA 339 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 F+ G + ++VA+D+AARG+D+ DV HV N+ P + Y+HRIGRTGRAG G A T V Sbjct: 340 FRSGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRAGASGTAVTFVD 399 Query: 351 KEDIKHIDAIEKLI 364 +D+ I K + Sbjct: 400 WDDVPRWGLISKAL 413 >gi|319775651|ref|YP_004138139.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047] gi|317450242|emb|CBY86458.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047] Length = 444 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHPDSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense] Length = 440 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/372 (38%), Positives = 218/372 (58%), Gaps = 15/372 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL ++V A + G+ P IQI+ IPL LQ DV G+AQTG+GKT +F LP+L Sbjct: 11 FKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPIL-- 68 Query: 63 LEKGRARVRMPR-----TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 A ++ PR +L PTRELA Q+++ FE G + A+L+GGI Q+ Sbjct: 69 ----HALLQAPRPNHFFACVLSPTRELAIQISEQFEALGSGIGVKSAVLVGGIDMVQQSI 124 Query: 118 KLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K+ + +++ TPGR+LDH K ++ ++ LV+DEADR+L+ F + I ++P Sbjct: 125 KIAKHPHIIVGTPGRVLDHLKNTKGFSLSKLKYLVLDEADRLLNEDFEESLNEILGMIPR 184 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R+T LFSATMT +++K+ L+NP +IE +T ST +T++ + A+ K C L+ Sbjct: 185 ERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQYRFLPAK-RKDCYLVY 243 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L + + ++F L L G I+G++ Q R+ L+ FK G Sbjct: 244 ILTEMAGS--TSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDC 301 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++ +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G A +LV + +++ Sbjct: 302 NILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEW 361 Query: 357 IDAIEKLIEKKV 368 IEKLI KK+ Sbjct: 362 YIQIEKLIGKKL 373 >gi|329122297|ref|ZP_08250885.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116] gi|327473858|gb|EGF19275.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116] Length = 444 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 209/366 (57%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK 366 ++ E+ Sbjct: 364 KRYTEE 369 >gi|90581476|ref|ZP_01237270.1| ATP-dependent RNA helicase [Vibrio angustum S14] gi|90437337|gb|EAS62534.1| ATP-dependent RNA helicase [Vibrio angustum S14] Length = 437 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 217/372 (58%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FA+LGL+P V+ + D G+ TPIQ +P++L HD+ G AQTGTGKT +F+ Sbjct: 11 FAELGLNPLVLKGLDDKGFHNCTPIQALALPVMLTGHDIAGQAQTGTGKTIAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + PR +I+ PTRELA Q+ ++ + L L GG P+E Q Sbjct: 71 LLETAAPAHRKTNQPRAIIMAPTRELALQIYNDASSLIASTGLKAGLAYGGEPYEKQKAV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176 L+ G D+LI T GRI+D + + + + +I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LDEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPS 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R +LLFSAT++ +++++ + +P+ + V T I+ Y +K LLQ Sbjct: 191 ERLSLLFSATLSYRVKELAFEHMNSPESVVVEPEQKTGHRIQEELF--YPSNQEKMRLLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ + IIF N K ++ L G V + G++ Q+ R +IL F +G + Sbjct: 249 TLIE-EEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG G + + +E + Sbjct: 308 DILVATDVAARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGLSGHSISFACEEYAIN 367 Query: 357 IDAIEKLIEKKV 368 + AIE IE + Sbjct: 368 LTAIETYIEHGI 379 >gi|167525138|ref|XP_001746904.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1] gi|163774684|gb|EDQ88311.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1] Length = 487 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 210/363 (57%), Gaps = 12/363 (3%) Query: 12 VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65 V+ ++ G+ PTPIQ + P+ L ++ G+A TG+GKT SF+LP + +L Sbjct: 72 VMDVLMREGFSTPTPIQAQGWPMALAGRNMVGVADTGSGKTLSFILPAIVHINNQPLLRP 131 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 G P L+L PTRELA Q+A+ KYG + + + GG P Q LERG ++ Sbjct: 132 GDG----PIALVLAPTRELAQQIAEVAHKYGSSSRIKTTCVFGGAPKRGQAMDLERGVEL 187 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 LI TPGR++D + K + LV+DEADRMLDMGF P ++ I S + RQTL++SA Sbjct: 188 LIGTPGRLIDFLDTRKTNLRRCTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSA 247 Query: 186 TMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244 T E+Q+++ FL Q+ R+++ +A V Y K+ L + L + Sbjct: 248 TWPKEVQQLAYEFLGQDVIRVQIGAIGLSANHRIKQHVMIMQDYDKQRELFRLLDEIMRQ 307 Query: 245 MKN-GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 +N IIF K+NV +L +L ++GF +HG+ QR R +L+ F++G +++A+D Sbjct: 308 KENKTIIFAETKRNVDDLTRNLRREGFPAMCMHGDKQQRERDTVLAEFRDGRHPILIATD 367 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 +A+RGLD+ D+ +V NFD PN +E+Y+HRIGRT R G G A+T + ++ + + + Sbjct: 368 VASRGLDVKDIKYVINFDYPNNSEDYVHRIGRTARGGGEGTAYTFFSSKNARQAKDLVSV 427 Query: 364 IEK 366 +E+ Sbjct: 428 LEE 430 >gi|157962823|ref|YP_001502857.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847823|gb|ABV88322.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 445 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/374 (36%), Positives = 212/374 (56%), Gaps = 14/374 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L PK++ AV GY + T +Q + +P+ ++ D+ AQTGTGKTA+F LP+L Sbjct: 1 MNFDAFDLHPKILDAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLL 60 Query: 61 TIL----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 L E + L+L PTRELA QVADN Y + + GG Sbjct: 61 NTLIKEYSLFTDSEAELTHQSSVKVLVLTPTRELAIQVADNITAYAQFLPFKTTAVYGGS 120 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 Q K L+ G D+L+ TPGR+ DH + L ++N+ LV+DEADRMLD+GF+ I+ + Sbjct: 121 NMNPQRKALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDIEKV 180 Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230 LV QTL FSAT +D ++ ++E L P+ I V T ++ + + ++ + Sbjct: 181 KKLVAPAHQTLFFSATYSDAVKTLAEKMLIAPEWINVATSATASLITQEIYL---VDTRR 237 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K LL +L+ ++ + ++F + +++ +L L+ G HG Q +R + L Sbjct: 238 KAELLSELI-GRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALEE 296 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G +++MVA+D+AARGLDI + V N ++P AE+Y+HR+GRTGRAG G+A + V+ Sbjct: 297 FKSGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVS 356 Query: 351 KEDIKHIDAIEKLI 364 +D + + IE LI Sbjct: 357 PQDREMMQEIEVLI 370 >gi|52842336|ref|YP_096135.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629447|gb|AAU28188.1| ATP dependent RNA helicase DbpA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 468 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L +++ ++ + Y TPIQ++++P++L+ D+ A+TG+GKTA+F L +L Sbjct: 11 LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDMIAQAKTGSGKTAAFALCLL 70 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L + + + L+L PTRELA QV+ + N+ + L GGIP + Q L Sbjct: 71 NNL---KISFFVVQALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDSL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA +++ TPGRIL H L ++ ++ LV+DEADRMLDMGF I+NI S+ P RQ Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQRQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +E++++S+ F+++PK + V TP + +H + +++++K LL+ LL Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFY--EVSRHAQKFPLLKSLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + +IFCN K+ + + L +GFS A++G+++Q R + F + ++ Sbjct: 246 LHYQPV-SVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSIL 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI ++ V NFD+ + +IHRIGRTGRAG G A ++V D + I A Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364 Query: 360 IEKLIEKKVDWLN 372 IE + W N Sbjct: 365 IEDNYPLPIHWGN 377 >gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii] gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii] Length = 750 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/354 (38%), Positives = 212/354 (59%), Gaps = 4/354 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L LS V+ A+ D GY P+PIQ TIP+ L D+ A TG+GKTA+F++P++ Sbjct: 238 NFNSLSLSRPVLKALGDLGYATPSPIQGATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 297 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L A+V R ++L PTRELA QVAD +K GK N LT + +GG+ Q + L+ Sbjct: 298 RLIYKPAKVASTRVIVLAPTRELAIQVADVGKKLGKYVNGLTFGIAVGGLNLRQQEQILK 357 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D++I TPGR +DH N ++++E+LVIDEADRML+ GF I I L+P RQ Sbjct: 358 TRPDIVIATPGRFIDHIRNSSSFNVDSVEVLVIDEADRMLEEGFQDEINEIMHLLPSKRQ 417 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM +++++ L+ P R+ + P ++ FV + K + L L+ Sbjct: 418 TMLFSATMNSKIKQLVSLSLKRPVRVMTDPPQQAVSKLQQEFVRIRKRDHLKPSTLFYLI 477 Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D K ++F ++K+ V L L G +V +HG+++Q R++ ++ FK + Sbjct: 478 KKLDGAAQKRMVVFVSKKEMVHRLRIILGLLGMAVAELHGSLNQEQRLQSINKFKSLEVP 537 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +++ +DLA+RGLDIP + V N+D+P E Y+HR+GRT RAGR G++ + V + Sbjct: 538 VLICTDLASRGLDIPKIEVVINYDMPKSFEIYLHRVGRTARAGREGRSVSFVGE 591 >gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum 'So ce 56'] gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 812 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 134/353 (37%), Positives = 214/353 (60%), Gaps = 8/353 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F L LS ++ + + GYV PTP+Q+ V + D A+TGTGKTA+F LP++ Sbjct: 30 FDVLPLSSELRETLAEIGYVHPTPVQLAVWEPVTRGRDAVVQARTGTGKTAAFGLPIVDH 89 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ A+ ++ L L PTRELA QV+ E+ GK + V + GG P + Q L Sbjct: 90 AVKRSLAQAQV---LALCPTRELALQVSAEVERLGKRKGIKVVAVYGGAPMQRQIDALAA 146 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR+LDH RG ++ +I +LV+DE D ML MGF + I + +P RQTL Sbjct: 147 GAQVIVGTPGRVLDHLRRGTIVAKHIRLLVLDECDEMLSMGFERELTAILAELPPERQTL 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT+ ++++++ + L++P+ I ++ + A I+H Y K L ++++ Sbjct: 207 LFSATLPPDIERIARSKLRSPEFITLSGDAVGALQIQHYV---YLITGDKLTSLVRIIEV 263 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ +N +IFCN K + +L++QG+ ++G++ Q R K++S +EG ++ +VA Sbjct: 264 ENP-ENAVIFCNTKDETEAVAGALKRQGYDADWLNGDLPQSDREKVMSATREGRLRFLVA 322 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +D+AARG+DI + HV N+D P AE Y+HR GRTGRAGR G A L+ +D+ Sbjct: 323 TDVAARGIDISHLTHVINYDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQDV 375 >gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 471 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/411 (34%), Positives = 222/411 (54%), Gaps = 21/411 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD + P++ A+ G P PIQ T+P+ L+ D+ G A+TGTGKT F +P+L Sbjct: 72 FADFDVEPEICEALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMD 131 Query: 63 L----EKGRAR---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 E+G P+ LI+ PTRELA QVA+ + + + GG +E Q Sbjct: 132 TLGPGEEGWDEDPASGSPQALIILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQ 191 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + LERGA+V++ TPGR++D RG L + ++ +V+DEAD MLD+GF+P ++ I + Sbjct: 192 IEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR 251 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 R T+LFSATM + ++ ++ P I P T++ Y +S K + Sbjct: 252 TDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEV 311 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQ++ + IIF K+ + L +GF+ A+HG++ Q +R + L F+ Sbjct: 312 VSRILQAEGRGRT-IIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRNS 370 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARG+D+ DV HV N+ P + Y+HRIGRTGRAG G A T V +D+ Sbjct: 371 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDDV 430 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 I K + ++ P+E ++H + + IP+K TG Sbjct: 431 PRWRIIAKALGLPIE----------EPVETYHTSEHLFS--DLSIPEKVTG 469 >gi|89073869|ref|ZP_01160376.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34] gi|89050404|gb|EAR55905.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34] Length = 437 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 217/372 (58%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FA+LGL+P V+ + D G+ TPIQ +P++L HD+ G AQTGTGKT +F+ Sbjct: 11 FAELGLNPLVLKGLDDKGFHNCTPIQALALPVMLTGHDIAGQAQTGTGKTIAFLTATFNH 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +L + PR +I+ PTRELA Q+ ++ + L L GG P+E Q Sbjct: 71 LLETAAPAHRKTNQPRAIIMAPTRELAIQIYNDASSLIASTGLKAGLAYGGEPYEKQKAV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176 L+ G D+LI T GRI+D + + + + +I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LDEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPN 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R +LLFSAT++ +++++ + +P+ + V T I+ Y +K LLQ Sbjct: 191 ERLSLLFSATLSYRVKELAFEHMNSPESVVVEPEQKTGHRIQEELF--YPSNQEKMRLLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ + IIF N K ++ L G V + G++ Q+ R +IL F +G + Sbjct: 249 TLIE-EEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDV 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P+ AE+Y+HRIGRTGRAG G + + +E + Sbjct: 308 DILVATDVAARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGLSGHSISFACEEYAIN 367 Query: 357 IDAIEKLIEKKV 368 + AIE IE + Sbjct: 368 LTAIEAYIEHGI 379 >gi|333000436|gb|EGK20018.1| ATP-dependent RNA helicase srmB [Shigella flexneri VA-6] Length = 444 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 213/368 (57%), Gaps = 4/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDKSLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD+ + K+ +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E L++DEADRMLDMGF I++I + +QTL Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ D +Q +E L++P + N PS+ H + K ALL LL+ Sbjct: 186 LFSATLEGDAIQDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ I+F +++ V L + L + G + C + G + Q R + + EG + ++V Sbjct: 245 QPEATRS-IVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIPDV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + Sbjct: 304 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 363 Query: 361 EKLIEKKV 368 + IE+ + Sbjct: 364 GRYIEEPI 371 >gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893] gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893] Length = 474 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 220/369 (59%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 51 FKDLGIIDSLCDACTSLGYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK + L+L PTRELA Q++++FE G ++ A+++GG+ +Q+ L + Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQISESFEALGSLISVRCAVIVGGMDMISQSISLGK 166 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + N++ LV+DEADR+LD+ F P + I ++P R+T Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT++ +++ + L NP R+ +++ T T+ ++ +Y K L+ L Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDIYLVHIL- 284 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + IIF L L GF +HG + Q +R+ L F+ G+ ++ Sbjct: 285 -NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDIL 343 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP V V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++ Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQR 403 Query: 360 IEKLIEKKV 368 IE + K++ Sbjct: 404 IEAALGKQL 412 >gi|149639330|ref|XP_001510706.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, partial [Ornithorhynchus anatinus] Length = 974 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 143/427 (33%), Positives = 235/427 (55%), Gaps = 15/427 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 317 WVQCGISMKILNSLRKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 376 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 377 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKALGLRVVCVYGGTGISEQI 432 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 433 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 492 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 V RQT++FSAT ++ ++ L P ++V S +E + + +K Sbjct: 493 VRPDRQTVMFSATFPRAMEALARRILNKPVEVQVGGRSVVCSDVEQQVIVIEEE-NKFLK 551 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ L Q++ + IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 552 LLELLGHYQES-GSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKS 610 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G AFT + ++ Sbjct: 611 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGHAFTFITEDQ 670 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 ++ I K +E + DL L + A+ +K++ K FD ++ Sbjct: 671 ARYAGDIIKALELSGTAVPADLEKLWSDFKDQQKAEGKTIKKSSGFSGKGFKFDETEQAL 730 Query: 414 SSQKSHI 420 ++++ + Sbjct: 731 ANERKKL 737 >gi|301754403|ref|XP_002913034.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Ailuropoda melanoleuca] Length = 764 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 25/466 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 186 LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 245 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + N+T L +GG+ ++Q L Sbjct: 246 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALR 305 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 306 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 365 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 366 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 425 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 426 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 485 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 486 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 545 Query: 360 IEKL-----------------IEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQ 401 I K K++ + D+ + L E+ ++ Q + A+ N Sbjct: 546 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEL-QQSEAQINTAKRL 604 Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447 G + N+ ++S KE K K+ + +QE D L RG Sbjct: 605 LEKG--KEASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 645 >gi|294814858|ref|ZP_06773501.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064] gi|326443235|ref|ZP_08217969.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064] gi|294327457|gb|EFG09100.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 819 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 132/348 (37%), Positives = 203/348 (58%), Gaps = 12/348 (3%) Query: 31 TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80 T+P+ L DV G A+TGTGKT F LP+L T+ +E GRAR P+ L++ P Sbjct: 2 TLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRARPDQLSEAPQALVVVP 61 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 TREL QV ++ GK N+ V + GG +E Q + L +G DV++ TPGR+LD + Sbjct: 62 TRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALRKGVDVIVGTPGRLLDLAGQK 121 Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200 KL ++ + LV+DEAD MLD+GF+P ++ I L+P RQT+LFSATM + ++ ++ Sbjct: 122 KLDLSQVRALVLDEADEMLDLGFLPDVEKIIQLLPAKRQTMLFSATMPGAVIGLARRYMS 181 Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 P I P T+ + Y +S K ++ ++LQ++ +IFC K+ Sbjct: 182 QPTHIRATAPDDEGATVANITQRVYRAHSMDKPEMVSRILQAEG-RGLAMIFCRTKRTAA 240 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 ++ L ++GF+ A+HG++ Q +R + L F+ G + ++V +D+AARG+D+ V HV N Sbjct: 241 DIADQLARRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVIN 300 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367 + P + Y+HR+GRTGRAG G A TLV +DI I K ++ K Sbjct: 301 YQSPEDEKTYLHRVGRTGRAGASGTAVTLVDWDDIPRWQLINKALDLK 348 >gi|281351106|gb|EFB26690.1| hypothetical protein PANDA_000812 [Ailuropoda melanoleuca] Length = 703 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 25/466 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 155 LSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 214 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + N+T L +GG+ ++Q L Sbjct: 215 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALR 274 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 275 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 334 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 335 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 394 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 395 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 454 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 455 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 514 Query: 360 IEKL-----------------IEKKVDWLNGDLSS-LNPPLEKIDIAQHNHARKNNPIPQ 401 I K K++ + D+ + L E+ ++ Q + A+ N Sbjct: 515 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEL-QQSEAQINTAKRL 573 Query: 402 KSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRG 447 G + N+ ++S KE K K+ + +QE D L RG Sbjct: 574 LEKG--KEASNHEPERSWFQTKEERKKEKIAKALQEFD---LALRG 614 >gi|255657870|ref|ZP_05403279.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544] gi|260850060|gb|EEX70067.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544] Length = 441 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 217/369 (58%), Gaps = 12/369 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+ P +C VL + G + TP+Q K +PLV HD AQTGTGKT +F+LP Sbjct: 4 FQELGIRP-ALCDVLRSHGIKEATPVQEKAMPLVRAGHDCIVKAQTGTGKTLAFLLP--- 59 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 I+EK + + + + L++ PTRELA Q+A + +++ ++ GG E Q +KL R Sbjct: 60 IIEKIKPQAAVTQALVITPTRELAIQIAKVAQSLSAAADISSLVIFGGQDIERQKQKLRR 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR+LDH R + ++ + +V+DEAD M+ +GFI ++ + RQ + Sbjct: 120 HPQLIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLEATAADRQLM 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALLQQLL 239 LFSATM D ++ +S ++ P+ +E+ + T + I+ + T + K C ++ Sbjct: 180 LFSATMPDRVKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDTREETKIDKLCEII---- 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 +Q+ ++FC+ K+ + +L +G+ V +HG++ Q R +L F++ +Q++ Sbjct: 236 -NQEQPYLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQIL 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 A+D+AARGLDI V HVFN+D+P+ AE+YIHRIGRTGRAG GKA T V + Sbjct: 295 CATDIAARGLDIEGVTHVFNYDIPHDAESYIHRIGRTGRAGERGKAITFVNARQYDLLRR 354 Query: 360 IEKLIEKKV 368 IE I+ ++ Sbjct: 355 IEGGIKDRI 363 >gi|134113286|ref|XP_774667.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257311|gb|EAL20020.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var. neoformans B-3501A] Length = 559 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 15/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G ++ + G+ P+ IQ + P+ L D+ IA+TG+GKT SF LP + Sbjct: 131 FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVH 190 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P LIL PTRELA Q+ K+G++ + + GG P Q Sbjct: 191 INAQPLLAPGDG----PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 246 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L+RG ++ + TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 247 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 306 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCAL 234 RQTLLFSAT E+Q+++ +FL + ++ + + TA +H V T + K+ L Sbjct: 307 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCT--DFDKRSKL 364 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L + +IF K+ +L L G+ AIHG+ Q R +L+ FK G Sbjct: 365 LSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSG 424 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A+RGLD+ D+G+V N+D PN E+YIHRIGRTGRAGR G ++T ++ Sbjct: 425 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 484 Query: 355 KHI-DAIEKLIEKKVD 369 K + ++ L E K D Sbjct: 485 KAARELVQILRESKAD 500 >gi|134113284|ref|XP_774668.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257312|gb|EAL20021.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var. neoformans B-3501A] Length = 546 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 15/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G ++ + G+ P+ IQ + P+ L D+ IA+TG+GKT SF LP + Sbjct: 118 FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVH 177 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P LIL PTRELA Q+ K+G++ + + GG P Q Sbjct: 178 INAQPLLAPGDG----PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 233 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L+RG ++ + TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 234 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 293 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCAL 234 RQTLLFSAT E+Q+++ +FL + ++ + + TA +H V T + K+ L Sbjct: 294 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCT--DFDKRSKL 351 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L + +IF K+ +L L G+ AIHG+ Q R +L+ FK G Sbjct: 352 LSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSG 411 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A+RGLD+ D+G+V N+D PN E+YIHRIGRTGRAGR G ++T ++ Sbjct: 412 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 471 Query: 355 KHI-DAIEKLIEKKVD 369 K + ++ L E K D Sbjct: 472 KAARELVQILRESKAD 487 >gi|148359632|ref|YP_001250839.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby] gi|148281405|gb|ABQ55493.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby] Length = 468 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/373 (37%), Positives = 223/373 (59%), Gaps = 7/373 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L +++ ++ + Y TPIQ++++P++L+ D+ A+TG+GKTA+F L +L Sbjct: 11 LSFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLL 70 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ V+ L+L PTRELA QV+ + N+ + L GGIP + Q L Sbjct: 71 NNLKISFFAVQ---ALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGSL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA +++ TPGRIL H L ++ ++ LV+DEADRMLDMGF I+NI S+ P RQ Sbjct: 128 RHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISICPKQRQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +E++++S+ F+++PK + V TP + +H + ++ ++K LL+ LL Sbjct: 188 TLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFY--EVSRQAQKFPLLKSLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + +IFCN K+ V + L +GFS A++G+++Q R + F + ++ Sbjct: 246 LHYRPV-SVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSIL 304 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI ++ V NFD+ + +IHRIGRTGRAG G A ++V D + I A Sbjct: 305 VATDVAARGLDIKELSAVINFDLAFDHDIHIHRIGRTGRAGSKGIALSIVTPADAQRICA 364 Query: 360 IEKLIEKKVDWLN 372 IE + W N Sbjct: 365 IEDNYPHPIHWGN 377 >gi|143462274|sp|Q0CIQ3|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3 Length = 445 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 215/368 (58%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ + A + GY PTPIQ + IP+ L+ D+ G+A+TG+GKTA+FVLPML Sbjct: 30 FRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQA 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + +LIL PTRELA Q+A E G ++ LLIGG+ +Q L + Sbjct: 90 LMD---KPQQFHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKK 146 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGR+LDH K + ++ LV+DEADR+LD+ F P + + L+P R+T Sbjct: 147 PHVIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLP-KRKTY 205 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM+ +++ + L +P R+ V+T + TA + ++ + + K L LL Sbjct: 206 LFSATMSSKVESLQRASLSDPVRVSVSTKNQTASKLLQSYL--FIPHKFKDFYLVYLLNE 263 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + GIIF L L GF IHG + Q +R+ L+ F+ + L++A Sbjct: 264 R-AGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIA 322 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDIP V +V N+D+P ++ YIHR+GRT RAG+ G AF+ V + +++ IE Sbjct: 323 TDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIE 382 Query: 362 KLIEKKVD 369 + KKV+ Sbjct: 383 DALGKKVE 390 >gi|145301126|ref|YP_001143967.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp. salmonicida A449] gi|189040025|sp|A4STJ7|RHLB_AERS4 RecName: Full=ATP-dependent RNA helicase rhlB gi|142853898|gb|ABO92219.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp. salmonicida A449] Length = 429 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 226/372 (60%), Gaps = 9/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FA +GL P+V+ + G+ TPIQ ++PL+++ HD+ G AQTGTGKT +F+ Sbjct: 11 FAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT V PR +I+ PTRELA Q+ ++ + + L + L GG ++ Q Sbjct: 71 LLTHPLSNPRLVNQPRAIIMAPTRELAVQIYNDADTISASTGLKLGLAYGGEGYDKQLAV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-- 176 LE+G D+LI T GRI+D+F + ++NI+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPT 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R ++LFSAT++ +Q+++ + +P+ +++ T I+ Y K LL Sbjct: 191 ERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGIRIQEELF--YPSNEDKMLLLL 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + K I+F N K ++ LE G V + G++ Q+ RMKIL +F +GT+ Sbjct: 249 SLMEEEWPEK-AIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTL 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +L ++ + Sbjct: 308 DILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFN 367 Query: 357 IDAIEKLIEKKV 368 + AIE+ I + Sbjct: 368 LPAIEEYIHHPI 379 >gi|159478699|ref|XP_001697438.1| predicted protein [Chlamydomonas reinhardtii] gi|158274317|gb|EDP00100.1| predicted protein [Chlamydomonas reinhardtii] Length = 515 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 215/367 (58%), Gaps = 22/367 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA++ L P +V + Y PTPIQ + +P+ L D+ G A+TG+GKTASF +PM+ Sbjct: 115 FAEMNLHPNIVADIQHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPMIQH 174 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTV--ALLIGGIPFEAQNKK 118 L + R P L+L PTRELA Q+ + + ++ +V ++++GG+P Q Sbjct: 175 CLNQQPLRAGDGPMALVLAPTRELAQQIEREVKAFSRSSGRSVRTSIVVGGVPMHEQRHD 234 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L G +V++ TPGR +DH +G + I +V+DEADRMLDMGF P I+ + + +P Sbjct: 235 LRNGVEVVVATPGRFIDHLQQGNTNLGRISYVVLDEADRMLDMGFEPQIKEVMNNLPPKH 294 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSS-TAETIEHCFVATYAQYSKKCAL 234 QTLLFSATM E+++++ +L P ++ V+TP++ ++ +EH A +K + Sbjct: 295 QTLLFSATMPKEIEELARAYLNKPVTVKIGAVSTPTANVSQRLEH------APEPQKLDI 348 Query: 235 LQQLLQSQDT--------MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 L L+ ++ M I+F +K + +L + G + A+HG ++Q R Sbjct: 349 LVALISAEVAAEAAGGPPMPLTIVFVERKTRCDEVAAALREDGINANALHGGLNQNEREA 408 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L +F +G I+++VA+D+A+RGLDI +GHV N D+P E+Y+HRIGRTGRAG G+A Sbjct: 409 ALRDFAKGDIKVLVATDVASRGLDIKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKGRAT 468 Query: 347 TLVAKED 353 +L D Sbjct: 469 SLWNDRD 475 >gi|29346241|ref|NP_809744.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|253568326|ref|ZP_04845737.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6] gi|29338136|gb|AAO75938.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|251842399|gb|EES70479.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6] Length = 422 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 11/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ + IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELKLNANVLDALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115 L +G +I+ PTRELA Q+ E G +Y + +VA+ G GI FE Q Sbjct: 61 NKLSEGGHPEDAINCVIMSPTRELAQQIDQQME--GFSYFMPASSVAVYGGNDGILFEQQ 118 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 119 KKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT++FSATM ++Q++++ L NP I++ + I+ +V Q K ++ Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPAEIKLAVSRPADKIIQAAYVCYENQ---KLGII 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + L + + + IIF + K V + +L+ +V +H +++Q R ++ FK G Sbjct: 236 RSLF-TDEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGR 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+ ARG+DI D+ V NFDVP+ +E+Y+HRIGRT RA G A T +++++ Sbjct: 295 INILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQS 354 Query: 356 HIDAIEKLIEKKV 368 + +IE +EK++ Sbjct: 355 NFKSIENFLEKEI 367 >gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314] gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314] gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1] Length = 399 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 214/376 (56%), Gaps = 14/376 (3%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80 + KPTPIQ + IP L+ D+ G+AQTG+GKTA+F +P+L L + L+L P Sbjct: 3 FTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYF---ALVLAP 59 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 TRELA Q+ D F+ G + L + ++GG+ Q + L R V++ TPGRI+DH Sbjct: 60 TRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHT 119 Query: 141 K-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 K + N++ LV+DEADR+LDM F P + I ++P R T LFSATMT++++K+ L Sbjct: 120 KGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASL 179 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 NP R+ V++ TA+ + + Y K +L LL ++ K+ I+F + Sbjct: 180 HNPVRVAVSSKYQTADNLVQSMMLVNDGY--KNTILIHLL-NEFMGKSIIVFTRTVAHAQ 236 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 GF+ +HG + Q R+ L+ FK ++VA+D+AARGLDIP V V N Sbjct: 237 RTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVIN 296 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379 +D+P ++ YIHR+GRT RAGR GK+ +L+ + D++ IE ++ KK+ + Sbjct: 297 YDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGKKLPKED------K 350 Query: 380 PPLEKIDIAQHNHARK 395 PP E +D A H H K Sbjct: 351 PPKEVLD-ALHVHVDK 365 >gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163] Length = 472 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 217/369 (58%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ ++ A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 113 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK ++ LIL PTRELA Q++ +FE G N+ A+++GG+ +Q+ L + Sbjct: 114 LMEKPQSFF----GLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGK 169 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + ++ LV+DEADR+LDM F P + I ++P R+T Sbjct: 170 KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM+ +++ + L NP R+ V++ T T+ ++ + + K L LL Sbjct: 230 FLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYL--FLPHKHKDIYLVYLL 287 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ ++ IIF + L GF +HG + Q +R+ L F+ + ++ Sbjct: 288 -NEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDIL 346 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP V V NFD+P ++ Y+HR+GRT RAG+ G A + V + D++ Sbjct: 347 VATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLR 406 Query: 360 IEKLIEKKV 368 IE + KK+ Sbjct: 407 IEGALGKKL 415 >gi|145630403|ref|ZP_01786184.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021] gi|260582313|ref|ZP_05850106.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127] gi|144984138|gb|EDJ91575.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021] gi|260094681|gb|EEW78576.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127] Length = 444 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLVRFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|307182555|gb|EFN69748.1| ATP-dependent RNA helicase bel [Camponotus floridanus] Length = 692 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 153/395 (38%), Positives = 220/395 (55%), Gaps = 27/395 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F ++ L+ + ++ AGY KPTP+Q IP+++ R DV AQTG+GKTA+F++P+L Sbjct: 210 FDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQ 269 Query: 62 ILEKG-----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 I E G R + P L+L PTRELA Q+ D K+ + A++ GG Sbjct: 270 IYESGPRPPPVQANSSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGS 329 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 Q ++L+RG +L+ TPGR++D RGK+ ++N LV+DEADRMLDMGF P I+ I Sbjct: 330 NIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRI 389 Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 +P T RQTL+FSAT E+Q ++ +FL N + V ST+E I V + Sbjct: 390 VQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIV--WV 447 Query: 227 QYSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 + K + L LLQ+ + ++F KK L L G+ V +IHG+ Q Sbjct: 448 EEHDKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLATMGYPVTSIHGDRTQ 507 Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341 R R + L F+ G ++VA+ +AARGLDIP V HV NFD+P E Y+HRIGRTGR G Sbjct: 508 REREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGN 567 Query: 342 HGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WLN 372 G A + ++ + D + LIE + WL+ Sbjct: 568 LGLATSFFNHKNHNLVRDLVSLLIEANQELPPWLD 602 >gi|23397305|gb|AAN31934.1| putative RNA helicase, DRH1 [Arabidopsis thaliana] Length = 423 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 131/331 (39%), Positives = 200/331 (60%), Gaps = 8/331 (2%) Query: 39 HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGK 97 D+ IA+TG+GKT +++P L++ R RM P L+L PTRELA Q+ + K+G+ Sbjct: 1 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR 60 Query: 98 NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157 + ++ L GG P Q + LERGAD+++ TPGR+ D ++ + I LV+DEADR Sbjct: 61 SSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADR 120 Query: 158 MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTA 214 MLDMGF P I+ I +P RQTL+++AT ++K++ + L NP ++ V+ + Sbjct: 121 MLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANK 180 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 +H V + ++ L+Q+L+SQ+ IIFC+ K+ L +L +Q F A Sbjct: 181 SITQHIEVVAPMEKQRR---LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAA 236 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 IHG+ Q R +L+ F+ G ++VA+D+AARGLD+ D+ V N+D PN E+Y+HRIG Sbjct: 237 IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIG 296 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 RTGRAG G+AFT +D KH + K++E Sbjct: 297 RTGRAGATGQAFTFFGDQDSKHASDLIKILE 327 >gi|94969920|ref|YP_591968.1| DEAD/DEAH box helicase-like [Candidatus Koribacter versatilis Ellin345] gi|94551970|gb|ABF41894.1| DEAD/DEAH box helicase-like protein [Candidatus Koribacter versatilis Ellin345] Length = 423 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 144/386 (37%), Positives = 221/386 (57%), Gaps = 14/386 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D+ LS + + A ++ PTP+Q K IP L D+ AQTGTGKT +F++P L + Sbjct: 29 FNDMPLSDVLKQRLEAAQFINPTPVQEKAIPPALDGRDILATAQTGTGKTLAFIIPALEM 88 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L R P + LIL PTRELA QV +E+ + AL++GG Q + + Sbjct: 89 L-----RDTEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGGTSERNQIQSI 143 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 GA V++ TPGR+ D+ R + ++ +E+LV+DEADRM+DMGF+P I+ I +P +Q Sbjct: 144 RSGARVVVATPGRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPRDKQ 203 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL FSATM + + ++ L N R+E+ + A +E + K L+QLL Sbjct: 204 TLCFSATMGPAVSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKDA--LRQLL 261 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q+ ++F K+ L L + GFS IHG+ Q R L+ F +G+I+++ Sbjct: 262 YEQE--GKTLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFDKGSIKVL 319 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ D+ HV NFD+P E++IHR+GRTGRAG G A +LV+ ++ + Sbjct: 320 VATDVAARGLDVDDIAHVINFDLPQVPEDFIHRVGRTGRAGATGMATSLVSGAEVFELRN 379 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKI 385 IE+ ++ K+ DL++ P ++ Sbjct: 380 IERTLKLKI--ARRDLNATTTPKREV 403 >gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus] gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus] Length = 758 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 215/365 (58%), Gaps = 5/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F+LP+L Sbjct: 180 LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL 239 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + ++T L +GG+ + Q L Sbjct: 240 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALR 299 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR++DH N ++++E+L++DEADRMLD F ++ I L RQ Sbjct: 300 SGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQ 359 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238 T+LFSATMT+E++ ++ L+NP RI VN+ + A + F+ + + A++ L Sbjct: 360 TMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSAL 419 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L T + ++ Q K + H L G V +HGN+ Q R++ L FK+ I Sbjct: 420 LTR--TFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQID 477 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 478 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKML 537 Query: 358 DAIEK 362 I K Sbjct: 538 KEIVK 542 >gi|281208721|gb|EFA82896.1| putative RNA helicase [Polysphondylium pallidum PN500] Length = 803 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 145/355 (40%), Positives = 204/355 (57%), Gaps = 8/355 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS + AV G+ PTPIQ KTIP Q C A TG+GKTA+F+LP+L Sbjct: 183 FQELHLSRPLQKAVQKLGFTMPTPIQAKTIPPSTQ----C--ATTGSGKTAAFLLPILER 236 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L R R L+L PTRELA Q E + N+T L++GG+ + Q +L + Sbjct: 237 LLYRDVDNRAIRVLVLLPTRELALQCQSVLENLAQFTNITSCLVVGGLSNKVQEVELRKR 296 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV+I TPGR++DH N + ++++EILV+DEADR+LDMGF ++ I P RQ+L Sbjct: 297 PDVVIATPGRLIDHLLNAHDVGLDDLEILVLDEADRLLDMGFKDELEKIVESCPANRQSL 356 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240 LFSAT++DE++ +++ L+ P R+ V+ A T+E FV Q + ALL L Sbjct: 357 LFSATLSDEVKTLAKLSLKQPIRVAVDALYQVASTLEQEFVKIRPTQLGDRPALLLSLAS 416 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 IIF KK V LC G S +HG++ Q R + L F++G +Q ++ Sbjct: 417 RVFNTGGTIIFFKSKKEVHRLCIIFGLAGLSAAELHGDLSQEQRFESLQLFRDGKVQFLL 476 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ASD+AARGLD+ V V N+++P YIHR+GRT RAG G+A + V + D K Sbjct: 477 ASDVAARGLDVLGVKTVINYNIPRNLAQYIHRVGRTARAGAQGRACSFVTEGDRK 531 >gi|325299227|ref|YP_004259144.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318780|gb|ADY36671.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM 18170] Length = 618 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 218/367 (59%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F +LG++P++ A+ + GY P P+Q + IP +L +DV +AQTGTGKTA+F LP++ Sbjct: 4 FEELGVAPEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLIQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ G R+P+ LIL PTREL Q+A + Y K +L + + GG E+Q K L+ Sbjct: 64 KIDVGN---RVPQALILCPTRELCLQIAGDLNDYSKYITDLKIIPVYGGSSIESQIKSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G +++ TPGR++D R + I +V+DEAD ML+MGF I I VP R T Sbjct: 121 KGVHIIVATPGRLIDLIERKVAKLETIRDVVMDEADEMLNMGFTDSINAILEKVPEDRNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM+ E+ ++++ +L++ K I + T + + + H Y ++K L + + Sbjct: 181 LMFSATMSPEISRIAKTYLRDAKEITIGTKNEGTKNVHHV---AYIVHAKDKYLALKRVV 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 M GIIFC + + L + G++ ++HG + Q R ++ F++ +QL+V Sbjct: 238 DFYPMIYGIIFCRTRLETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + ++ + + I Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDVESYTHRSGRTGRAGKTGISIAIMNLREKGKMKQI 357 Query: 361 EKLIEKK 367 E+++ KK Sbjct: 358 ERILNKK 364 >gi|298385617|ref|ZP_06995175.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14] gi|298261758|gb|EFI04624.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14] Length = 413 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 224/373 (60%), Gaps = 11/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ + IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELKLNANVLDALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL---TVALLIG--GIPFEAQ 115 L +G +I+ PTRELA Q+ E G +Y + +VA+ G GI FE Q Sbjct: 61 NKLSEGGHPEDAINCVIMSPTRELAQQIDQQME--GFSYFMPASSVAVYGGNDGILFEQQ 118 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 119 KKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT++FSATM ++Q++++ L NP I++ + I+ +V Q K ++ Sbjct: 179 KERQTIMFSATMPAKIQQLAKTILNNPAEIKLAVSRPADKIIQAAYVCYENQ---KLGII 235 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + L + + + IIF + K V + +L+ +V +H +++Q R ++ FK G Sbjct: 236 RSLF-TDEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGR 294 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+ ARG+DI D+ V NFDVP+ +E+Y+HRIGRT RA G A T +++++ Sbjct: 295 INILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQS 354 Query: 356 HIDAIEKLIEKKV 368 + +IE +EK++ Sbjct: 355 NFKSIENFLEKEI 367 >gi|294886917|ref|XP_002771918.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] gi|239875718|gb|EER03734.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] Length = 521 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/393 (35%), Positives = 217/393 (55%), Gaps = 19/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F G ++ + AG+V PTPIQI+ P+ + D+ GIA+TG+GKT +F+LP + Sbjct: 118 FEQAGFPDYILHELAQAGFVAPTPIQIQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIVH 177 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L++G P L++ PTRELA Q+ + K+GK+ + GG+P Q Sbjct: 178 INAQPYLQRGDG----PIVLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQA 233 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L G ++ I TPGR++D + + + LV+DEADRMLDMGF P I+ ITS + Sbjct: 234 RDLSEGVEICIATPGRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRP 293 Query: 177 TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLL+SAT E+Q ++ + + P I V T + A +V +Y K+ L Sbjct: 294 DRQTLLWSATWPKEVQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLK 353 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L + D K +IF + K+ +L +L G+ IHG+ Q R +L FK G Sbjct: 354 QLLERVMDGSKL-LIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGK 412 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG G A+T + IK Sbjct: 413 SPIMIATDVASRGLDVKDIRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTADKIK 472 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 + +++ + +++P LE++ + Sbjct: 473 MARGLVQILREAN-------QTVSPELERLSMT 498 >gi|10177293|dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] Length = 564 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 143/384 (37%), Positives = 215/384 (55%), Gaps = 15/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D ++ A+ G+ +PTPIQ + P+ L+ D+ GIA+TG+GKT +++LP L Sbjct: 140 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 199 Query: 63 LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + A+ R+ P LIL PTRELA Q+ + K+G + + GG P Q + Sbjct: 200 VS---AQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 256 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 257 DLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPD 316 Query: 178 RQTLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHC--FVATYAQYSKKCAL 234 RQTLL+SAT E++ ++ FL++P K I +T ++I V T +Y++ L Sbjct: 317 RQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 376 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L+QL+ + IF K+ + L G+ AIHG+ Q R ++L+ FK G Sbjct: 377 LKQLMDGSKIL----IFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSG 432 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M A+D+AARGLD+ D+ V N+D PN E+YIHRIGRTGRAG G AFT ++ Sbjct: 433 RSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNA 492 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378 K + K++++ + LS+L Sbjct: 493 KFARELVKILQEAGQVVPPTLSAL 516 >gi|115958772|ref|XP_001180014.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Strongylocentrotus purpuratus] Length = 785 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 138/382 (36%), Positives = 210/382 (54%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + GL + + + GY P+PIQ + IP+ LQ DV G+A+TG+GKTA+F++P+L Sbjct: 358 WDEYGLPKHITDIIAEVGYKDPSPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLVW 417 Query: 63 L------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + E+ + + P +IL PTRELA Q+ + K+GK + +IGGI E Q Sbjct: 418 ISTLPKIERDEDKDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVTIIGGISREDQG 477 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL G +++I TPGR++D L++ +V+DEADRM+DMGF P +Q I +P Sbjct: 478 FKLRLGCEIVIATPGRLIDVLENRYLVLCQCTYVVLDEADRMIDMGFEPDVQKILEYLPV 537 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++V+ ++L+ P + + + Sbjct: 538 TNQKPDSEEAEDSAKLLANFASKKKYRQTVMFTATMPTAVERVARSYLRRPAVVYIGSIG 597 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E+++ T Q K+ L+Q L + D +IF NQKK V L LEK GF+ Sbjct: 598 KPVESVQQLVYMTSNQ-EKRQKLIQLLEKGIDP--PVLIFVNQKKRVDALAKRLEKMGFN 654 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 +HG Q R L++ K G ++VA+D+A RG+DI DV V NFD+ E+Y H Sbjct: 655 ATTLHGGKSQEQREYALASLKAGLKDILVATDVAGRGIDIKDVSVVINFDMAKNIEDYTH 714 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG+ G A + + +D Sbjct: 715 RIGRTGRAGKTGTAVSFLTPDD 736 >gi|146163668|ref|XP_001012102.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila] gi|146145909|gb|EAR91857.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila SB210] Length = 533 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 228/409 (55%), Gaps = 21/409 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ ++V A YVKPT IQ +++ L++ D+ +A+TG+GKT +F LP++ Sbjct: 98 FQSLGVCEELVEACNRLKYVKPTAIQRESLVYTLKQRDIIALAETGSGKTLAFALPVIQN 157 Query: 63 LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + P+ L+L PTREL Q+A++FE G +L +++GG+ AQ L Sbjct: 158 L------LDAPQPFYALVLSPTRELCMQIAEHFEALGVGISLKTTVIVGGLDPMAQAIAL 211 Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + ++I TPGRIL H K ++ LV+DEAD++L+M F I I ++P R Sbjct: 212 SKKPHIIIGTPGRILYHMQNTKGFNFKALKFLVLDEADKLLNMDFEKDINQILDIIPKKR 271 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATMT+++ K+ L++P +IEV++ T+ + A+Y K C L+ L Sbjct: 272 NTFLFSATMTNKVHKLQRASLKDPVKIEVSSKYQMVSTLVAQYAFIPAKY-KDCYLVYSL 330 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ IIF N + L L GFS IHG + Q R+ ++ FK G ++ Sbjct: 331 --NEFAGNTSIIFVQTCLNAIKLTLMLRNLGFSAVTIHGQMSQVKRLGAINKFKSGEKKI 388 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGLDIP V V N+D+P A+ Y+HR+GRT RAGR GKA + V + D++ Sbjct: 389 LVATDVASRGLDIPSVDLVINYDIPTNAKEYVHRVGRTARAGRAGKAISFVTQYDVEMYL 448 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHA--------RKNNPI 399 IE LI KK+D + + E++ AQ A +KNNP+ Sbjct: 449 KIEALIGKKLDQYKCEEYQVLVFNERVQEAQRIAAQEIKEIMEKKNNPL 497 >gi|50293017|ref|XP_448941.1| hypothetical protein [Candida glabrata CBS 138] gi|74661092|sp|Q6FLF3|DBP2_CANGA RecName: Full=ATP-dependent RNA helicase DBP2 gi|49528254|emb|CAG61911.1| unnamed protein product [Candida glabrata] Length = 544 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 208/364 (57%), Gaps = 12/364 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPT IQ + P+ L D+ GIA TG+GKT S+ LP + Sbjct: 112 FDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 171 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 172 INAQPLLSPGDG----PIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQI 227 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 ++L RGA+++I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 228 RELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 287 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL++SAT E+Q+++ ++L +P ++++ + A V +++ K+ L++ Sbjct: 288 DRQTLMWSATWPKEVQQLARDYLNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVK 347 Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L SQD +IF + K+ + L + G+ AIHG+ DQR R +L+ F+ G Sbjct: 348 HLDTASQDKESKILIFASTKRTCDEITSYLRQDGWPALAIHGDKDQRERDWVLNEFRTGN 407 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+AARG+D+ + V N+D+P E+Y+HRIGRTGRAG G A + ED K Sbjct: 408 SPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFFT-EDNK 466 Query: 356 HIDA 359 + A Sbjct: 467 SLGA 470 >gi|298484048|ref|ZP_07002217.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22] gi|298269829|gb|EFI11421.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22] Length = 420 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 218/371 (58%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ + IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G+ +I+ PTRELA Q+ E + ++ + GG I FE Q K Sbjct: 61 NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ L +P I++ + I+ +V Q K +++ Sbjct: 181 RQTIMFSATMPAKIQQLANTILNDPSEIKLAVSKPAEKIIQAAYVCYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + + I+F + K V + +L+ +V +H +++Q R ++ FK G I Sbjct: 238 LFMDE-VPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V NFDVP+ +E+Y+HRIGRT RA G A T + +++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356 Query: 358 DAIEKLIEKKV 368 +IE +EK++ Sbjct: 357 KSIENFLEKEI 367 >gi|187251183|ref|YP_001875665.1| superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191] gi|186971343|gb|ACC98328.1| Superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191] Length = 502 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 212/365 (58%), Gaps = 9/365 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D LS + + + G+ PTP+Q +TIPL ++ HDV AQTG+GKT +F +P++ Sbjct: 5 NFQDFSLSEITLKTIENMGFTTPTPVQAQTIPLAIEGHDVLASAQTGSGKTCAFGIPVIE 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L + ++ LI+ PTREL QV F KNY LT A ++GG Q++ L+ Sbjct: 65 HLVQNKSN----NALIVTPTRELGEQVHKVFTMLTKNYPQLTSAFIVGGKSITQQSRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +I TPGR+ D NRG+L ++ ++ V DE DRMLD+GFI I++I + +P RQ Sbjct: 121 KRPRCIIGTPGRLNDMINRGELDLSKTKVAVWDEMDRMLDIGFINQIESIMAKLPVKRQM 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 ++FSAT + K++E +L PKRI V+ +S A +E ++ K L LL+ Sbjct: 181 MMFSATYPKRVIKIAEKYLVAPKRISVDPENSVAVNVEEEIISVI--RDNKFETLVSLLR 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IF + +V L L K+ F +IHG Q R + +F+E ++V Sbjct: 239 AKGG--STLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEKFDILV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP + V N+D+P RAE+YIHRIGRT RAG G A + V D + I Sbjct: 297 ATDVAARGLDIPHIQLVINYDLPLRAEDYIHRIGRTARAGAKGLAISFVTPNDKHLWNDI 356 Query: 361 EKLIE 365 +K ++ Sbjct: 357 QKFLK 361 >gi|308048143|ref|YP_003911709.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] gi|307630333|gb|ADN74635.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] Length = 444 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 207/369 (56%), Gaps = 5/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L L +++ V G+ + T IQ K IP + D+ ++TG+GKT +F+LP + Sbjct: 1 MQFSQLALDKRLLATVDHLGFAEATEIQQKAIPTAIAGKDLLASSRTGSGKTLAFLLPAM 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + + R PR LIL PTRELA QV N + L++GG F Q+K L Sbjct: 61 QRLIRSKPLSKRDPRVLILAPTRELAKQVYGQLRLVVANTSYKSLLILGGEDFNQQSKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178 R ++ TPGR+ DH G L ++ +E+L++DEADRMLD+GF +Q I R Sbjct: 121 ARDPHFVVATPGRLADHLEHGHLYLHGLEMLILDEADRMLDLGFADQLQAIHKAADHRKR 180 Query: 179 QTLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTL+FSAT+ + + L NP RI +++ + I H + + K A L+ Sbjct: 181 QTLMFSATLDHAAVNQFGAQLLNNPTRIRIDSEAEIHSDIHHRMLFS-DHLDHKEAQLKA 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL+ QD K I+F + + L L + G+S A+ G ++Q +R +I+ +F G + Sbjct: 240 LLEKQD-FKQLILFTATRGDTDRLAVLLSEWGYSTLALSGELNQTARSQIMQDFAAGKAK 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++ +D+A+RGLDIP V HV NFD+P E Y+HR+GRTGRAG G AF+LV +D Sbjct: 299 ILITTDVASRGLDIPQVSHVVNFDLPKHPEEYVHRVGRTGRAGAKGDAFSLVGPKDWPSF 358 Query: 358 DAIEKLIEK 366 +E +++ Sbjct: 359 KKLEAFLQQ 367 >gi|307200175|gb|EFN80473.1| ATP-dependent RNA helicase bel [Harpegnathos saltator] Length = 611 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 145/358 (40%), Positives = 207/358 (57%), Gaps = 22/358 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F ++ L+ + ++ AGY KPTP+Q IP+++ R DV AQTG+GKTA+F++P+L Sbjct: 219 FDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQ 278 Query: 62 ILEKG----------RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111 I E G R + P L+L PTRELA Q+ D K+ + A++ GG Sbjct: 279 IYESGPRPPPPQASTGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSN 338 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 Q ++L+RG +L+ TPGR++D RGK+ ++N LV+DEADRMLDMGF P I+ I Sbjct: 339 IVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRIV 398 Query: 172 SL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227 +P T RQTL+FSAT E+Q ++ +FL N + V ST+E I V + + Sbjct: 399 QQDNMPPTGERQTLMFSATFPKEIQILARDFLSNYIFLAVGRVGSTSENITQKIV--WVE 456 Query: 228 YSKKCALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 K + L LLQ+ + + ++F KK L L + G+ V +IHG+ QR Sbjct: 457 EHDKRSYLLDLLQASNFADSSAESLTLVFVETKKGADMLEEYLAQMGYPVTSIHGDRTQR 516 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 R + L F+ G ++VA+ +AARGLDIP V HV NFD+P E Y+HRIGRTGR G Sbjct: 517 EREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMG 574 >gi|293376696|ref|ZP_06622919.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909] gi|325845185|ref|ZP_08168493.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1] gi|292644653|gb|EFF62740.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909] gi|325488781|gb|EGC91182.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1] Length = 368 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 207/362 (57%), Gaps = 6/362 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LG+S ++ + +G PTPIQ + PL+ DV AQTGTGKT +F+LP+ Sbjct: 1 MNFKTLGVSDDLIQVLKKSGITSPTPIQEQCYPLIKNYKDVIAQAQTGTGKTLAFLLPLF 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + LI+ PTRELA Q+ + K + N+ V GG +Q KL+ Sbjct: 61 ---ENISPDIEATQALIITPTRELALQITEEANKLAEIRNINVLAAYGGRNIGSQLNKLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++I TPGR++DH R + ++ ++ +VIDEAD+ML MGF + I P RQT Sbjct: 118 KSIHLIIATPGRLIDHLERQTITLDKVKSVVIDEADQMLLMGFRNEVDQILRQTPRNRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM +++++ + +P I + E+I+ V T ++ K AL Q L Sbjct: 178 LCFSATMAPNVKRLAYRYSYDPTMITIEAKKVAVESIKQELVETTDRW-KADALCQVL-- 234 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D IIFC K+ L ++++GF+ IH +I Q R +IL +F+E +Q ++ Sbjct: 235 EEDNPFLAIIFCRTKRRADQLFAKMKQRGFNTQVIHSDIAQNKRERILKSFREADLQYLI 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDI V H++N+D+P E YIHRIGRTGRAG G VA +D ++AI Sbjct: 295 ATDVASRGLDISGVTHIYNYDIPETPETYIHRIGRTGRAGEEGYTCLFVAPKDDFELNAI 354 Query: 361 EK 362 E+ Sbjct: 355 ER 356 >gi|209877961|ref|XP_002140422.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66] gi|209556028|gb|EEA06073.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66] Length = 442 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 219/372 (58%), Gaps = 11/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA LG+ ++ A G++KPT IQ + IP+ L+ D+ G+A+TG+GKT +F+LP+L Sbjct: 29 ITFASLGVCKELCLACESLGWLKPTDIQREAIPIALRGGDIIGLAETGSGKTGAFILPIL 88 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + ++R+ +++L PTREL Q+++ F G +L VA ++GG+ Q L Sbjct: 89 QSLLENQSRMY---SVVLAPTRELCVQISEQFSALGSLISLQVANIVGGMDMVNQALSLA 145 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + +++ +PGR++DH K +++++ LV+DEADR+L M F + I P R Sbjct: 146 KKPHIIVASPGRLVDHLENTKGFNISSVKYLVMDEADRLLSMDFEIALTKIIEACPKNRN 205 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237 T LFSATMT ++ K+ L+NP +I VNT TAE + + F+ ++S L+Q Sbjct: 206 TYLFSATMTTKVAKLQRVSLKNPVKICVNTKYDTAENLLQYYMFIPFKFKWSYLVILVQN 265 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q GIIF N + +++ GFS +HG ++Q R+ L+ FK Sbjct: 266 LSQY-----TGIIFTNTCISCKRGALLMQQLGFSSVCLHGRMNQTQRLAALNQFKSKQRH 320 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+ +++ +RGLDIP V V NFD+P +++Y+HR+GRT RAGR GKA +LV + D++ Sbjct: 321 LLFTTEVGSRGLDIPHVDFVINFDIPMSSKDYVHRVGRTARAGRSGKAISLVTQYDVEMF 380 Query: 358 DAIEKLIEKKVD 369 +E + KK+D Sbjct: 381 QRVEFALNKKLD 392 >gi|195437654|ref|XP_002066755.1| GK24389 [Drosophila willistoni] gi|194162840|gb|EDW77741.1| GK24389 [Drosophila willistoni] Length = 808 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/382 (34%), Positives = 213/382 (55%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + G P+++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ Sbjct: 382 WNESGFPPEIIDIIDRVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 441 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 ++ R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q Sbjct: 442 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQG 501 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P Sbjct: 502 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 561 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++++ ++L+ P + + + Sbjct: 562 TNLKPDTEEAEDESKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 621 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E E V + K+ L++ L +S D IIF NQKK L LEK G++ Sbjct: 622 KPTERTEQ-IVYMMGENDKRKKLMEILSRSIDP--PIIIFVNQKKGADVLAKGLEKLGYN 678 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 C +HG Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y H Sbjct: 679 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTH 738 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG++G A + V K+D Sbjct: 739 RIGRTGRAGKNGVAISFVTKDD 760 >gi|220933542|ref|YP_002512441.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994852|gb|ACL71454.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] Length = 432 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 215/373 (57%), Gaps = 9/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L V + DAG+ + TPIQ +P+ L+ HDV G AQTGTGKTA+F++ Sbjct: 17 FSQFDLPDSVRQGIEDAGFSRCTPIQALALPIALKGHDVAGQAQTGTGKTAAFLIAAFNR 76 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + A + R LIL PTRELA Q+ + G + L + L GG ++ Q ++ Sbjct: 77 LLRDPAPAERKQNQIRALILAPTRELAIQIHKDAVTLGAHTGLKLGLAYGGTDYDKQRQQ 136 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--PF 176 L G D+LI TPGRI+D+F + M ++++V+DEADRM D+GFI I+ + + P Sbjct: 137 LVDGVDILIGTPGRIIDYFKQKVFDMRVVQVMVLDEADRMFDLGFIKDIRFLLRRMTPPT 196 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ++LFSAT++ + +++ + NP++++ TA+ + V Y +K LL Sbjct: 197 ERQSMLFSATLSHRVMELAYEHMNNPEKVQTRDEQVTAQRVRQ--VVYYPANPEKIPLLL 254 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ ++F N K L L+ V + G++ Q+ R ++L F+ Sbjct: 255 GLMKRIGPSRS-MVFVNTKHMADKLEAWLKGNDIKVAVLSGDVPQQKRQRLLKQFENDEF 313 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+AARGL IPDV HVFNFD+P E+Y+HRIGRTGRAG G A + ++ + Sbjct: 314 QVLVATDVAARGLHIPDVSHVFNFDLPQSGEDYVHRIGRTGRAGAEGDAVSFACEDSAFY 373 Query: 357 IDAIEKLIEKKVD 369 + IE+ I K++ Sbjct: 374 LPEIEQYIGFKIE 386 >gi|157817897|ref|NP_001100529.1| ATP-dependent RNA helicase DDX42 [Rattus norvegicus] gi|149054552|gb|EDM06369.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) [Rattus norvegicus] Length = 929 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 212/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L ++L+++G ++ +HG++DQ R K++ +FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|67483276|ref|XP_656915.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS] gi|56474154|gb|EAL51537.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS] Length = 535 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 212/364 (58%), Gaps = 15/364 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59 + F + ++ + + Y+KPTPIQ P+VLQ DV GIA+TG+GKT SF++P + Sbjct: 153 LTFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAI 212 Query: 60 LTILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + IL+ A+ R PR LIL PTREL Q+AD K+ K + GG+P +Q K Sbjct: 213 IHILDTPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTAIKTVRCFGGVPQSSQMKD 272 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + G D+ + TPGR++D RG ++ L++DEADRML+MGF +Q+I + R Sbjct: 273 FQSGCDICVATPGRLIDFIKRGVTSLSRCTFLILDEADRMLEMGFEVQVQDIIGQIRPDR 332 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTP-----SSTAETIEHCFVATYAQYSKKCA 233 QT++++AT +Q+ + F+ +P +I + P S + IE C Q + + Sbjct: 333 QTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQIIEVC------QERDRDS 386 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 + ++++ + K +IF K++ NLC+ L Q + V +HG+ Q R + LS+FK Sbjct: 387 KMNEIVKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKVQAERDRALSDFKS 446 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR--HGKAFTLVAK 351 G + ++A+D+A+RGLDI ++ V N+++P+ ENYIHRIGRTGR GR G+A +L Sbjct: 447 GAVNYLIATDVASRGLDIRNIEIVINYEMPSDIENYIHRIGRTGRMGRSVEGEAISLFTY 506 Query: 352 EDIK 355 D + Sbjct: 507 ADAR 510 >gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] Length = 479 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 147/410 (35%), Positives = 228/410 (55%), Gaps = 13/410 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ + A+ G+ P+ IQ + IP L D+ G+A+TG+GKT +FV+P+L Sbjct: 30 FAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQS 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L R+ L+L PTRELA Q+ + FE G + L A ++GGI Q L R Sbjct: 90 LLHNPQRLY---ALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARK 146 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V+I TPGR++DH K + ++ LV+DEADRML M F I I L+P R T Sbjct: 147 PHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPADRNTY 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT +++K+ L++P ++E+ +T ET++ ++ A++ K C L L + Sbjct: 207 LFSATMTSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKF-KDCYLAYVL--N 263 Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ +IF CN + V + +L GF +HG + Q SR+ L+ FK + Sbjct: 264 EVAGQSVLIFASTCNGTQKVTLMLRNL---GFQAICLHGQMPQPSRLGALNKFKAKARNV 320 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +V +D+A+RGLDIP V V N+D+P ++YIHR+GRT RAGR G A + V + D++ Sbjct: 321 LVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQ 380 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR 408 IE L+ K+D + + ++ E+++ AQ + TG R Sbjct: 381 RIEHLLGTKLDAYSCEEETVLVITERVNEAQRIATIEMKEAAANGTGIKR 430 >gi|296394809|ref|YP_003659693.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181956|gb|ADG98862.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM 44985] Length = 452 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 203/377 (53%), Gaps = 12/377 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ +V A+ AG P PIQ +P L+ DV G TG+GKT +F LPML Sbjct: 6 FASLGVPQPIVSALAKAGVTAPFPIQAAALPPALEGRDVLGRGPTGSGKTLTFGLPMLAR 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L G ++ R PR L+L PTRELAAQVA + L A ++GG+ + Q +L RG Sbjct: 66 LANGASKPRKPRGLVLVPTRELAAQVASALTPLAASVGLRTASVVGGLSMQRQIDELARG 125 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVL+ TPGR+ DH +G ++++ + + +DEAD+M DMGF+P + I P Q LL Sbjct: 126 VDVLVATPGRLADHLAQGTVVLDEVSVTALDEADQMADMGFLPQVVKILDRTPKKGQRLL 185 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH--CFVATYAQYSKKCALLQQLLQ 240 FSAT+ ++ K+ +L NP +++ T+EH FV Q KK + + + Sbjct: 186 FSATLDGQVDKLVRRYLDNPATCSTAPAAASVSTMEHHMLFV---DQEQKKLVVTEIAAR 242 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 T I+F + K L L G S AIHG Q +R + L FK G + ++V Sbjct: 243 EGRT----ILFVHTKHGADRLTKRLRAVGVSAAAIHGGKAQNNRTRTLEAFKSGDVAVLV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+++AARG+ I V V + D P ++Y+HR GRT RAG G TLV + + +A+ Sbjct: 299 ATNVAARGVHIDGVDLVVHVDPPADPKDYLHRAGRTARAGESGVVITLVTPAERRDAEAM 358 Query: 361 EK---LIEKKVDWLNGD 374 + ++ K V GD Sbjct: 359 ARAAGVVVKGVPVRAGD 375 >gi|156973271|ref|YP_001444178.1| ATP-dependent RNA helicase SrmB [Vibrio harveyi ATCC BAA-1116] gi|156524865|gb|ABU69951.1| hypothetical protein VIBHAR_00952 [Vibrio harveyi ATCC BAA-1116] Length = 407 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L ++ A+ + GY +PT IQ + IP L D+ A TGTGKTA+FVLP L Sbjct: 5 FAELDLDQNLLEAIDEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA QVAD KN L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+ ++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239 LFSAT+ + ++ + + L P I+ +P + I + A A++ K ALL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEH--KLALLKHII 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F ++ + L LE I G + Q R +S F+EGT+ ++ Sbjct: 243 TEQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGTVNVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A ++V D +D Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360 Query: 360 IEKLIEKKV 368 + + +++ + Sbjct: 361 VARYVKEDI 369 >gi|148979305|ref|ZP_01815437.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3] gi|145961845|gb|EDK27137.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3] Length = 424 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 210/368 (57%), Gaps = 7/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA+L L+ K V A L + + KPT IQ IP ++ DV +AQTG+GKT +F LP+L Sbjct: 1 MSFANLTLNTKTVAA-LPSQFNKPTEIQQAVIPTIVSGRDVLALAQTGSGKTLAFGLPLL 59 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++G +++ L++ PTRELA+QV ++ + ++ L GG + Q ++L Sbjct: 60 NNIDQGSNKLQ---ALVIVPTRELASQVTESLKPIATALSIKTVTLTGGRNADEQQQQLS 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + I TPGR+L G+L + LV+DEADR++DMGF P IQ IT+ +P RQ+ Sbjct: 117 TAPQIAIATPGRLLALIKSGELELAQCTSLVLDEADRLIDMGFWPDIQAITAALPTKRQS 176 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ EL +E L NPK+I + +S E IE + SK AL+ L Sbjct: 177 LLFSATLPPELVSQAETLLSNPKKITTHKENSVVEAIEETLYLVN-KGSKAQALIA--LL 233 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +Q+ ++F K N L L K SV A+HGN Q R + L +FK G ++++ Sbjct: 234 NQNPWPQVLVFIGAKDNADALTKRLNKAKISVSALHGNKSQEERAQALDSFKNGDTRVLI 293 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+ ARG+ I + V NF++P A Y+HR+GRT RAG G A +LV+ + ++ AI Sbjct: 294 ATDVMARGIHIDQLPIVINFELPPHAATYVHRVGRTARAGSTGCAISLVSHSETDYLTAI 353 Query: 361 EKLIEKKV 368 L K + Sbjct: 354 RTLTNKTL 361 >gi|29829640|ref|NP_824274.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680] gi|29606748|dbj|BAC70809.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680] Length = 759 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/346 (38%), Positives = 205/346 (59%), Gaps = 12/346 (3%) Query: 31 TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80 T+P+ L DV G A+TGTGKT F LP+L T+ +E GRAR P+ L++ P Sbjct: 2 TLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRARPEQLTDAPQALVVVP 61 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 TREL QV ++ GK N+ V + GG +E Q + L++G DV++ TPGR+LD + Sbjct: 62 TRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQK 121 Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200 KL + +I+ LV+DEAD MLD+GF+P ++ I +++P RQT+LFSATM + ++ ++ Sbjct: 122 KLDLKHIKALVLDEADEMLDLGFLPDVEKIINMLPARRQTMLFSATMPGAVIGLARRYMS 181 Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 P I P T+ + Y A K ++ ++LQ+ D ++FC K+ Sbjct: 182 QPTHIRATAPDDEGATVRNTAQFIYRAHNMDKPEMVSRILQA-DGRGLAMVFCRTKRTAA 240 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 +L L+++GF+ A+HG++ Q +R + L F+ G + ++V +D+AARG+D+ V HV N Sbjct: 241 DLADQLQQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVIN 300 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 + P + Y+HRIGRTGRAG G A TLV +DI I K ++ Sbjct: 301 YQSPEDEKTYLHRIGRTGRAGAKGIAITLVDWDDIPRWQLINKALD 346 >gi|260802690|ref|XP_002596225.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae] gi|229281479|gb|EEN52237.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae] Length = 924 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 149/449 (33%), Positives = 245/449 (54%), Gaps = 21/449 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + G+S KV+ + G+ KPTPIQ + IP+++ D+ GIA+TG+GKT +F++PM Sbjct: 237 LHWVQSGVSKKVLACLKKHGFEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMF 296 Query: 61 TILEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + R P +I+ PTRELA Q+ +K+ ++ NL V + GG Q + Sbjct: 297 RHILDQRPLEDTEGPIGVIMTPTRELALQITKECKKFTRHMNLKVVCVYGGTGISEQIAE 356 Query: 119 LERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+RGA+++ICTPGR++D N G++ + LV+DEADRM DMGF P + +I + V Sbjct: 357 LKRGAEIIICTPGRMIDMLAANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMHIVNSVR 416 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCAL 234 RQT++FSAT ++ ++ LQ P ++V S +E H V Q K Sbjct: 417 PDRQTVMFSATFPRNMEALARKVLQKPIEVQVGGRSVVCSDVEQHVIVLEEEQ---KFFK 473 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L +LL + + ++F +++ L L K +S ++HG IDQ R I+++FK G Sbjct: 474 LLELLGNYQEKGSVLVFVERQEVADTLLKDLLKAAYSCLSLHGGIDQYDRDSIINDFKSG 533 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+L+VA+ +AARGLD+ + V N+D PN E+Y+HR+GRTGRAG G A+T + ++ Sbjct: 534 NIRLLVATSVAARGLDVKQLILVINYDCPNHYEDYVHRVGRTGRAGNKGYAYTFITEDQG 593 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH--NHARKNNPIPQKSTGFDRRKKN 412 ++ + K +E LS P E +++ N + +K++GF + Sbjct: 594 RYAGDVIKALE---------LSERPVPEEVLNLWTEYVNRQKAEGKAVKKTSGFTGKGFK 644 Query: 413 YSSQKSHIPLKESEKISKLQQDIQENDAD 441 + + + E K+ K +Q++D + Sbjct: 645 FDETEQALA-DERRKLQKAALGLQDSDEE 672 >gi|317152644|ref|YP_004120692.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942895|gb|ADU61946.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 551 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 211/364 (57%), Gaps = 11/364 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPML 60 DF +LGLS + + A+ G+ PTPIQ +TIPL+LQ D+ G AQTGTGKTA+F LP++ Sbjct: 3 DFKELGLSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLPII 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + RV+ L+L PTRELA QVAD + V + GG Q K L+ Sbjct: 63 ETAVENAKRVQ---ALVLTPTRELAIQVADEINSLKGKKRIRVLPVYGGQAIHMQLKALK 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGRI+DH RG L ++ ++ V+DEAD M +MGF+ ++ I R+T Sbjct: 120 SGVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRT 179 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 LLFSATM E+ ++++ F+ + + I V + + F VA ++ C ++ Sbjct: 180 LLFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVV--- 236 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + G++F + + + L ++G+ IHG++ Q R +IL FK+ + + Sbjct: 237 --DAEPDFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTI 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+PD+ HV NF +P + ++HR GRTGRAG+ G A +L+A + + + Sbjct: 295 LVATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLM 354 Query: 359 AIEK 362 I K Sbjct: 355 FITK 358 >gi|16765963|ref|NP_461578.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62181218|ref|YP_217635.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612638|ref|YP_001586603.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553669|ref|ZP_02347416.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994856|ref|ZP_02575946.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232171|ref|ZP_02657229.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238338|ref|ZP_02663396.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245094|ref|ZP_02670026.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261356|ref|ZP_02683329.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168468057|ref|ZP_02701894.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823169|ref|ZP_02835169.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444674|ref|YP_002041910.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451369|ref|YP_002046652.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469312|ref|ZP_03075296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736243|ref|YP_002115655.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251182|ref|YP_002147547.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263960|ref|ZP_03164034.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245924|ref|YP_002216658.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389167|ref|ZP_03215779.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929439|ref|ZP_03220513.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353686|ref|YP_002227487.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857997|ref|YP_002244648.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584498|ref|YP_002638296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912708|ref|ZP_04656545.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16421193|gb|AAL21537.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128851|gb|AAX66554.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362002|gb|ABX65770.1| hypothetical protein SPAB_00333 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403337|gb|ACF63559.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409673|gb|ACF69892.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455676|gb|EDX44515.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711745|gb|ACF90966.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195628861|gb|EDX48275.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214885|gb|ACH52282.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242215|gb|EDY24835.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288867|gb|EDY28240.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940440|gb|ACH77773.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199606265|gb|EDZ04810.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321158|gb|EDZ06358.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273467|emb|CAR38444.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321947|gb|EDZ09786.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327350|gb|EDZ14114.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333649|gb|EDZ20413.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336132|gb|EDZ22896.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340544|gb|EDZ27308.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349536|gb|EDZ36167.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709800|emb|CAR34152.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469025|gb|ACN46855.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247841|emb|CBG25670.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994784|gb|ACY89669.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159194|emb|CBW18709.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913637|dbj|BAJ37611.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085536|emb|CBY95315.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225998|gb|EFX51051.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613360|gb|EFY10302.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620436|gb|EFY17301.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625096|gb|EFY21925.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629460|gb|EFY26236.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633847|gb|EFY30586.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635453|gb|EFY32164.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639871|gb|EFY36550.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644243|gb|EFY40787.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649935|gb|EFY46355.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654882|gb|EFY51199.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658190|gb|EFY54456.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661738|gb|EFY57956.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669719|gb|EFY65865.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673274|gb|EFY69379.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674937|gb|EFY71024.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682960|gb|EFY78978.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685621|gb|EFY81616.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715706|gb|EFZ07277.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130981|gb|ADX18411.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323191951|gb|EFZ77189.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200416|gb|EFZ85497.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201315|gb|EFZ86382.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208386|gb|EFZ93326.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211538|gb|EFZ96376.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215970|gb|EGA00702.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221751|gb|EGA06159.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225641|gb|EGA09868.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229359|gb|EGA13483.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235326|gb|EGA19410.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237488|gb|EGA21551.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245243|gb|EGA29244.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246468|gb|EGA30449.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254001|gb|EGA37823.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259051|gb|EGA42699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261974|gb|EGA45539.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267757|gb|EGA51238.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269684|gb|EGA53136.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624414|gb|EGE30759.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628791|gb|EGE35134.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989572|gb|AEF08555.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 444 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 138/353 (39%), Positives = 206/353 (58%), Gaps = 4/353 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD+ + K+ +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E L++DEADRMLDMGF I++I + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ D ++ +E L++P + N PS+ H + + K ALL+ LL+ Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADNFEHKVALLKHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F +++ V L +L G + C + G + Q R + + +G + ++V Sbjct: 245 -QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+AARG+DIPDV HV NFD+P + Y+HRIGRTGRAGR G A +LV D Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHD 356 >gi|194743932|ref|XP_001954452.1| GF16725 [Drosophila ananassae] gi|190627489|gb|EDV43013.1| GF16725 [Drosophila ananassae] Length = 693 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 205/347 (59%), Gaps = 4/347 (1%) Query: 10 PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66 P ++ V+ G+ KP+PIQ + P++L+ HD+ GIAQTGTGKT +F+LP + E Sbjct: 276 PDLLAEVMKQGFSKPSPIQAQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSVP 335 Query: 67 RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R + P L+L PTRELA Q+ +KY N+ + GG Q +ERGA+++ Sbjct: 336 RGQRGGPNVLVLAPTRELALQIEMEVKKYSFR-NMRAVCVYGGGDRRMQISDVERGAEII 394 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 ICTPGR+ D + +++I LV+DEADRMLDMGF P I+ + + RQT++ SAT Sbjct: 395 ICTPGRLNDLVQANVINVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTIMTSAT 454 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246 ++++++++++NP ++ V + A + ++K ++ +++ Sbjct: 455 WPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIELLQDDAEKFQTIKSFVKNMRKTD 514 Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306 I+FC +K +L L GF IHGN DQ R + +++ K G ++++VA+D+A+ Sbjct: 515 KIIVFCGRKARADDLSSDLTLDGFCTQCIHGNRDQSDREQAIADIKSGAVRILVATDVAS 574 Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 RGLDI D+ HV N+D P E Y+HR+GRTGRAGR G + + V +ED Sbjct: 575 RGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFVTRED 621 >gi|56412534|ref|YP_149609.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361469|ref|YP_002141105.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126791|gb|AAV76297.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092945|emb|CAR58375.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 444 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 212/366 (57%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD+ + K+ +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E L++DEADRMLDMGF I++I + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ D ++ +E L++P + N PS+ H + + K ALL+ LL+ Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADNFEHKVALLKHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F +++ V L +L G + C + G + Q R + + +G + ++V Sbjct: 245 -QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIPDV HV NFD+P + Y+HRIGRTGRAGR G A +LV D + I Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKI 363 Query: 361 EKLIEK 366 + IE+ Sbjct: 364 GRYIEE 369 >gi|322515347|ref|ZP_08068343.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976] gi|322118634|gb|EFX90856.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976] Length = 445 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F +L L+P+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 10 FEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQN 69 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R ++ PR LIL PTRELA QVA+ + + + L++A + GG+ ++ + Sbjct: 70 LLDYPRRKLGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEVFNS 129 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + T Sbjct: 130 NQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKHTW 189 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL ++ L NP +I+ + I+ + K LL +L+ Sbjct: 190 LFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARLIS 248 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + M+ I+F ++++V L +L K+G + G++ Q R + ++ K+G + ++V Sbjct: 249 TM-KMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVLV 307 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV +V NFD+P A+ Y+HR+GRT RAG+ G A +LV D K + I Sbjct: 308 ATDVAARGIDIDDVDYVINFDLPYSADTYLHRVGRTARAGKKGSAISLVEAHDYKLLGKI 367 Query: 361 EKLIEK 366 ++ E+ Sbjct: 368 KRYTEE 373 >gi|321459317|gb|EFX70372.1| hypothetical protein DAPPUDRAFT_328137 [Daphnia pulex] Length = 738 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 153/405 (37%), Positives = 222/405 (54%), Gaps = 35/405 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D+ L+ + + Y KPTP+Q IP++L R DV AQTG+GKTA+F++P+L Sbjct: 223 FEDVKLTEIIRSNIALTRYDKPTPVQKYAIPIILARRDVMACAQTGSGKTAAFLVPILNQ 282 Query: 62 ILEKGRA------------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG 109 + E+G R + P L+L PTRELA Q+ D +K+ + ++ GG Sbjct: 283 LFERGPVVNQSAGQRSYGRRKQYPLALVLAPTRELATQIYDEAKKFAYRSRVRPCVVYGG 342 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 Q + LERG +L+ TPGR++D RGK+ + + LV+DEADRMLDMGF P I+ Sbjct: 343 ADVRQQMQDLERGCHLLVATPGRLVDMLERGKIGLEHCNFLVLDEADRMLDMGFEPQIRR 402 Query: 170 ITS--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225 I +P T RQTL+FSAT E+Q ++ +FL+N + V ST+E I V Sbjct: 403 IVEQDTMPKTGDRQTLMFSATFPKEIQMLARDFLENYIFLAVGRVGSTSENITQKIVWV- 461 Query: 226 AQYSKKCALLQQL-------------LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272 ++ K+ LL L +S + + ++F K+ L L + G+ V Sbjct: 462 EEHDKRSFLLDLLNASGLNKFNSQVETESTEHEQLTLVFVETKRGADALEEFLYRDGYPV 521 Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332 +IHG+ QR R L F+ G ++VA+ +AARGLDIP V HV NFD+P+ E Y+HR Sbjct: 522 TSIHGDRSQREREDALKRFRSGKTPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 581 Query: 333 IGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKKVD---WLNG 373 IGRTGR G G A + +++ I D +E +IE K + WL G Sbjct: 582 IGRTGRMGNLGVATSFFNEKNRNLIRDLVELIIETKQELPSWLEG 626 >gi|171061032|ref|YP_001793381.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix cholodnii SP-6] gi|170778477|gb|ACB36616.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6] Length = 417 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 216/373 (57%), Gaps = 9/373 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LGL P +V A G ++PTPIQ + IP +L+ DV G A+TG+GKTA+F LP+L Sbjct: 1 MSFVSLGLLPALVSAAQAHGLLRPTPIQAEAIPAILRGVDVLGAARTGSGKTAAFALPLL 60 Query: 61 TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQN 116 L+ G R R + L+L PTRELA QV + E + + + GG+ Q Sbjct: 61 QRLQPCLGEWR-RRTQALVLVPTRELALQVGEVLEDLSSHLVEPPRIVIAFGGVSINPQM 119 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L GA+V++ TPGR+LD L ++ + LV+DEADR+LD+GF + I + +P Sbjct: 120 MALRGGAEVVVATPGRLLDLLGHNALRIDTLNTLVLDEADRLLDLGFADELARIRAQLPP 179 Query: 177 TR-QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R Q L FSAT +E+Q +++ +L P RIE+ + AET + A +++ LL Sbjct: 180 RRFQHLFFSATFPEEVQALADEWLHEPVRIELQ--ADAAETPDITQRAIEVDATRRTPLL 237 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++LL ++ + ++F + L H L + G A+HG + Q +R L+ F++ Sbjct: 238 RKLL-AEPGWEQALVFVATRYATELLAHKLHRSGIKAAALHGELSQGARNAALAAFRQRE 296 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q++VA+D+AARG+DI + V NFD+P ++Y HRIGRTGRAG G+A + ++ + Sbjct: 297 LQVLVATDVAARGIDIARLPVVVNFDLPRSTDDYTHRIGRTGRAGEVGQAVSFISADTEA 356 Query: 356 HIDAIEKLIEKKV 368 H IEK +++V Sbjct: 357 HFRLIEKRQQQRV 369 >gi|66047019|ref|YP_236860.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257726|gb|AAY38822.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|330971079|gb|EGH71145.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 445 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ R +IL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+ N G L + ++E+LV+DEADRMLDMGF ++ + QT+ Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L++P+ ++VN+ S A H + K+ L L Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T + IIF N K L L + +HG+ DQ+ R + K+G ++MV Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P ++Y+HR+GRTGRAG G A +L+ D + ++ Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358 Query: 361 EKLIEKKVD 369 E+ +++ + Sbjct: 359 ERYLKQSFE 367 >gi|163749734|ref|ZP_02156980.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99] gi|161330547|gb|EDQ01505.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99] Length = 431 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/372 (37%), Positives = 218/372 (58%), Gaps = 10/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL P+++ + Y+ PT +Q KTIP VL D+ A TG+GKTA+F LPML Sbjct: 15 FEQLGLIPELLKRLTLLEYLNPTLVQGKTIPAVLSGRDLLAGAITGSGKTAAFALPMLQK 74 Query: 63 LEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117 L K A+V L+L PTRELA QVA++F+ YG+ L + + GG+ Q Sbjct: 75 LAKSSAKVSKGNQVSGLVLVPTRELAQQVAESFKSYGQLIKPRLKIEAVFGGVSANTQML 134 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + GADVL+ TPGR+LD + + +++++ LV+DEADRML +GF + + +L+P Sbjct: 135 AMRGGADVLVATPGRLLDLISSNAIKLDDVKTLVLDEADRMLSLGFTEELNQVLALLPKH 194 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSAT +E++ +++N L P I++ + T T++ ++K ALL Sbjct: 195 KQTLLFSATFPEEVKTLTDNLLSTPVEIQIQSEEQT--TLKQQVYTV--NRNRKTALLAH 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ D + ++F + K L L K G + H + Q +R K+L FK G Sbjct: 251 LIKEND-WRQVLVFASAKNTCNRLEQKLAKAGIAAQIFHSDKSQGARTKVLEAFKNGETH 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+DI + V N+++P +Y+HRIGR+GRAG G A +L++ ++ +H Sbjct: 310 VLIATDIAARGIDIDKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQHF 369 Query: 358 DAIEKLIEKKVD 369 IEK + K+D Sbjct: 370 KLIEKKNKIKLD 381 >gi|226944026|ref|YP_002799099.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ] gi|226718953|gb|ACO78124.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ] Length = 439 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 215/369 (58%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F+ L +++ A+ + +V+PTP+Q IP L+ HD+ IA+TG+GKTA+FVLP+L Sbjct: 2 FSQFALHERLLKALAELNFVEPTPVQAAAIPPALEGHDLRVIARTGSGKTAAFVLPLLNG 61 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ R RV + R LIL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 LIGDARPRVSI-RALILLPTRELAQQTLKEVERFSQFTFIKSGLVTGGENFKVQAALLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+H N G L + ++E+LV+DEADRMLDMGF +Q + RQTL Sbjct: 121 VPDILIGTPGRLLEHLNAGHLDLRDVEVLVLDEADRMLDMGFAEDVQRLVESCANRRQTL 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L+ P+ + +N +ET V T + K L+ LL+ Sbjct: 181 LFSATTGGSGLREMVAKVLREPRHLMLNAVGELSETTRQQIV-TADDPAHKERLVHWLLE 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ T + I+F N + L L G +HG DQ+ R + ++G +++V Sbjct: 240 NE-TYRKAIVFTNTRAQADRLYGHLVAAGHKAFVLHGEKDQKDRKLAIERLRQGGARVLV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P + Y+HR+GRTGRAG G A +L+ D + ++ Sbjct: 299 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRVGRTGRAGAEGLAVSLICHNDWNLMSSV 358 Query: 361 EKLIEKKVD 369 E+ ++++ + Sbjct: 359 ERYLKQRFE 367 >gi|317491008|ref|ZP_07949444.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920555|gb|EFV41878.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 442 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 223/390 (57%), Gaps = 12/390 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L +++ A+ D GY +PT IQ IP + DV G A TGTGKT +++LP+L Sbjct: 5 NFSELELDERLLDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTVAYLLPVLQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + PR L+L PTRELA QVA+ + K+ NL +A + GG+ + + Sbjct: 65 HLLDFPRKKSGPPRVLVLTPTRELAMQVAEQAIELAKHTNLDIATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D+++ T GR+L + +E L++DEADRMLDMGF I+ I + + +QT Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 184 Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSAT+ D +++ SE LQ+P IE + + I+ + K LL LL Sbjct: 185 MLFSATLEGDAIKEFSERLLQDPVEIEADPSRRERKKIQQWYYRA-DTLEHKTKLLCHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + K+ +IF +++ V L L + G + C + G + Q R + + +G + ++ Sbjct: 244 KEPEVTKS-VIFVRKRERVHELVGWLREAGINSCYLEGEMVQAKRNEAMKRMLDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIPD+ HVFNFD+P A+ Y+HRIGRTGRAGR G A +LV D + Sbjct: 303 VATDVAARGLDIPDISHVFNFDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDHLLLGK 362 Query: 360 IEKLIEKK-----VDWLNGDLSSLNPPLEK 384 I + +E++ VD L + PP EK Sbjct: 363 ISRYVEEQIKSRVVDELR---PTTKPPSEK 389 >gi|124268102|ref|YP_001022106.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum PM1] gi|124260877|gb|ABM95871.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum PM1] Length = 516 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 140/391 (35%), Positives = 223/391 (57%), Gaps = 27/391 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F LGL+ ++ AV G+ PT +Q + IP L+ D +QTG+GKTA+F+LP+L Sbjct: 75 NFESLGLAAPLLHAVTQLGFTAPTSVQEQAIPAALKGGDWMVSSQTGSGKTAAFLLPVLH 134 Query: 61 TILEKGRA---RVRMPRTLILEPTRELAAQVA-----------DNFEKYGKNY------- 99 +L G A RV PR ++L PTRELA QV+ + K + Sbjct: 135 RLLNAGAAEQTRVATPRAVVLCPTRELAQQVSADAIDLMRGVGEALRAEAKQHPLRDAAR 194 Query: 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159 L +A ++GG+PF Q L RGA +++ TPGR+LD +RG++ ++ ++LV+DEADRML Sbjct: 195 GLRIATVVGGMPFGKQLFDL-RGAQLVVATPGRLLDLHSRGQIRLDATQVLVVDEADRML 253 Query: 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH 219 D+GF + I QT++FSAT + ++ +++P R+E+ T I Sbjct: 254 DLGFAEDLAAIADATAQRDQTMMFSATFAPRIMALASKLMRSPGRLELATAHDVHSDITQ 313 Query: 220 CFVATYAQ-YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN 278 +A K ALL+ L+ + + ++F + + + + +L++QG S A+HG Sbjct: 314 TL--HWADNMGHKQALLEHWLRDAE-VDQAVVFASTQVDTEAIAEALQQQGHSAVALHGA 370 Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338 + Q R + L N ++G ++++VA+D+AARGLD+P + HV NF +P +AE+Y+HRIGRTGR Sbjct: 371 MPQAVRNRRLQNVRDGHVRVLVATDVAARGLDVPSISHVINFGLPMKAEDYVHRIGRTGR 430 Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 AGR G A T+ + I AIE + ++ Sbjct: 431 AGRSGTAITIAEHRERGKIRAIEAFTRQPIE 461 >gi|291239420|ref|XP_002739621.1| PREDICTED: Rs1-like [Saccoglossus kowalevskii] Length = 563 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/358 (38%), Positives = 206/358 (57%), Gaps = 1/358 (0%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 + LS ++ A+ +V PTPIQ+ TIP+ L D+C A TGTGKTA+F+LP+L L Sbjct: 1 MNLSRPLLKAINAMNFVHPTPIQVATIPVALLGKDICACAATGTGKTAAFMLPVLERLLY 60 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 + + R L+L PTREL QV + + + L +GG+ + Q L +G D+ Sbjct: 61 KPKQAAVTRVLVLVPTRELGIQVHSVTRQLAQFTEIDSCLAVGGLDVKLQEAVLRQGPDI 120 Query: 126 LICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 +I TPGR++DH N ++NIEIL++DEADRMLD F ++ I + TRQT+LFS Sbjct: 121 VIATPGRLIDHLHNAPSFSLSNIEILILDEADRMLDEYFEEQMKEIIRMCSITRQTMLFS 180 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244 ATMTDE++ + L+NP R+ +N + A + F+ + L S+ Sbjct: 181 ATMTDEVKDLVAVSLKNPVRLFINENTDVAYNLRQEFIRIRENREGDREAIAAALCSRTF 240 Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304 + I+F KK L L G +V +HGN+ Q R++ L FKE I +M+A+DL Sbjct: 241 HDHVIVFVQTKKQCHRLHIILGMLGLNVGELHGNLSQTQRLETLRRFKESNIDIMLATDL 300 Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 AARGLDI + + NF +PN ++Y+HR+GRT RAG+ G++ +L +++ K + I K Sbjct: 301 AARGLDIEGIKTIINFTMPNTVKHYVHRVGRTARAGKSGRSVSLCGEKERKMLKEIVK 358 >gi|237798870|ref|ZP_04587331.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021724|gb|EGI01781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 445 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ R +IL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+ N G L + ++E+LV+DEADRMLDMGF ++ + QT+ Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L++P+ ++VN+ S A H + K+ L L Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T + IIF N K L L + +HG+ DQ+ R + K+G ++MV Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P ++Y+HR+GRTGRAG G A +L+ D + ++ Sbjct: 299 ATDVAARGLDVEGLDMVVNFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358 Query: 361 EKLIEKKVD 369 E+ +++ + Sbjct: 359 ERYLKQSFE 367 >gi|66814184|ref|XP_641271.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4] gi|74897202|sp|Q54VT4|DDX47_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx47; AltName: Full=DEAD box protein 47 gi|60469306|gb|EAL67300.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4] Length = 546 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/419 (35%), Positives = 232/419 (55%), Gaps = 25/419 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LG+ P+++ A G+ KP IQ ++IP L+ D+ G+AQTG+GKTA+FV+P+L Sbjct: 119 VTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVL 178 Query: 61 TILEKGRARVRMPRTLI---LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L + P+ L L PTRELA Q+AD F G + +L+GGI +Q+ Sbjct: 179 QKL------LEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSL 232 Query: 118 KLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L + V++ +PGR+L H K + +I+ ++DEADR+ F + NI ++P Sbjct: 233 ALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPK 292 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R T LFSATMT ++ K+ L NP +++V + T +T+ ++ +Y K C L Sbjct: 293 ERNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKY-KDCYLAY 351 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L + + IIF + + + L GF I+G++DQ R+ L+ FK+GT Sbjct: 352 ILNELAGNLT--IIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTK 409 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDIP V V N+DVP ++ Y+HR+GRT RAG G+A T+V + D++ Sbjct: 410 SILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEM 469 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 IE +++KK+D ++ LE++ Q H N + + KNYSS Sbjct: 470 YQRIEFVLKKKLDSFPCQEETVLIFLERV---QEAHRIATNEL---------KDKNYSS 516 >gi|301384847|ref|ZP_07233265.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato Max13] gi|302059212|ref|ZP_07250753.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato K40] gi|302130851|ref|ZP_07256841.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331017330|gb|EGH97386.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 445 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ R +IL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+ N G L + ++E+LV+DEADRMLDMGF ++ + QT+ Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L++P+ ++VN+ S A H + K+ L L Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T + IIF N K L L + +HG+ DQ+ R + K+G ++MV Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P ++Y+HR+GRTGRAG G A +L+ D + ++ Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358 Query: 361 EKLIEKKVD 369 E+ +++ + Sbjct: 359 ERYLKQSFE 367 >gi|161502252|ref|YP_001569364.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863599|gb|ABX20222.1| hypothetical protein SARI_00280 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 444 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 140/354 (39%), Positives = 209/354 (59%), Gaps = 6/354 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD+ + K+ +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAIQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E L++DEADRMLDMGF I++I + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT+ D ++ +E L++P +EV+ TPS+ H + + K ALL+ LL Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSATPSTRERKKIHQWYYRADNFEHKVALLKHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + QD I+F +++ V L +L G + C + G + Q R + + +G + ++ Sbjct: 244 K-QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARG+DIPDV HV NFD+P + Y+HRIGRTGRAGR G A +LV D Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHD 356 >gi|18407327|ref|NP_566099.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana] gi|75318047|sp|O22907|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gi|16323192|gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana] gi|20196880|gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidopsis thaliana] gi|21700913|gb|AAM70580.1| At2g47330/T8I13.17 [Arabidopsis thaliana] gi|330255734|gb|AEC10828.1| DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] Length = 760 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 140/356 (39%), Positives = 209/356 (58%), Gaps = 4/356 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D G S +++ A+ Y KPT IQ + +P+VL DV GIA+TG+GKTA+FVLPM+ Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289 Query: 62 ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ R P +I PTRELA Q+ +K+ K Y L V+ + GG+ Q K+L+ Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELK 349 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G ++++ TPGR++D L M LV+DEADRM D+GF P +++I + RQT Sbjct: 350 AGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQT 409 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM +++K++ L +P R+ V E I + K LL++L Sbjct: 410 LLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPG 469 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + ++F ++K V + L F V A+HG+ DQ SRM+ L FK G +++ Sbjct: 470 MIDE-GDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLI 528 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKEDIK 355 A+D+AARGLDI + V N+D+ + ++HRIGRTGRAG R G A+TLV + + + Sbjct: 529 ATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREAR 584 >gi|71736956|ref|YP_273717.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. phaseolicola 1448A] gi|289647906|ref|ZP_06479249.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi str. 2250] gi|298488177|ref|ZP_07006214.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557509|gb|AAZ36720.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157456|gb|EFH98539.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869381|gb|EGH04090.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330988677|gb|EGH86780.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010277|gb|EGH90333.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 445 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ R +IL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+ N G L + ++E+LV+DEADRMLDMGF ++ + QT+ Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L++P+ ++VN+ S A H + K+ L L Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T + IIF N K L L + +HG+ DQ+ R + K+G ++MV Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P ++Y+HR+GRTGRAG G A +L+ D + ++ Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358 Query: 361 EKLIEKKVD 369 E+ +++ + Sbjct: 359 ERYLKQSFE 367 >gi|291280174|ref|YP_003497009.1| ATP-dependent RNA helicase DEAD/DEAH box family [Deferribacter desulfuricans SSM1] gi|290754876|dbj|BAI81253.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Deferribacter desulfuricans SSM1] Length = 525 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 212/359 (59%), Gaps = 11/359 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F LG+S ++ A+ G+ +PT IQ IP +L D+ AQTGTGKTA+F +P++ Sbjct: 6 EFEKLGVSKSILEALKKKGFEEPTDIQKLVIPKILNSDKDIVAQAQTGTGKTAAFGIPLI 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++++ ++ V+ LIL PTRELA QVA+ L + + GG E Q K+L+ Sbjct: 66 EMIDRKKSGVK---CLILTPTRELANQVAEEINSLKGRRKLKIVPVYGGQSMELQLKRLK 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+++ TPGRILDH R L ++ I+ ++DEAD ML+MGFI I+ I P R+ Sbjct: 123 EGADIVVGTPGRILDHLKRKSLDISKIDFFILDEADEMLNMGFIDDIKTIFRYTPENRRV 182 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+ +++ F+++ + I+V+ T E + + + L + Sbjct: 183 LLFSATMPREILNLAKTFMKDYELIKVDAKQLTTSLTEQIYFEVREEDK-----FEALCR 237 Query: 241 SQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +D G+IFC K +V + + L +G++ +HG++ Q R +IL FK I + Sbjct: 238 IRDMYPEFYGLIFCRTKVDVDTVANKLIDRGYNAEGLHGDLSQYQRERILHKFKTKRINM 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +VA+D+AARG+DI ++ HV N+ +P E+Y+HRIGRTGRAG+ G A T V + +++ Sbjct: 298 LVATDVAARGIDIDNLTHVINYSLPQNPESYVHRIGRTGRAGKKGIAITFVTPSEYRNL 356 >gi|20092752|ref|NP_618827.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A] gi|19918045|gb|AAM07307.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A] Length = 555 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/361 (37%), Positives = 206/361 (57%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F LGLS + A+ G+ +PTPIQ K IPL L+ D+ G AQTGTGKT +F P Sbjct: 7 FKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAFGAP--- 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 I+EK + + +IL PTRELA QV++ + L V + GG Q + L+ Sbjct: 64 IIEKIPEKSGYVQAIILTPTRELAIQVSEELNSIKGDKKLHVVPIYGGQSMTQQLRVLKS 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGRI+DH R L + +I V+DEAD ML+MGFI I+ I ++ L Sbjct: 124 GVDIVVGTPGRIIDHLERKSLDLEHIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRML 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM + + + ++QN + + + A+ E + Q + K L +++ Sbjct: 184 FFSATMPKPILGIVKKYMQNYEHVTIEKEELAAKLTEQIYFEV--QENDKFEALSRIIDI 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +D G++FC K + L L +G+ A+HG++ Q+ R KIL+ F++ I ++VA Sbjct: 242 EDEF-YGLVFCRTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQKINVLVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T V + + + I+ Sbjct: 301 TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIK 360 Query: 362 K 362 K Sbjct: 361 K 361 >gi|145628788|ref|ZP_01784588.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21] gi|144979258|gb|EDJ88944.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21] gi|309750162|gb|ADO80146.1| ATP-dependent RNA helicase [Haemophilus influenzae R2866] Length = 439 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|253702296|ref|YP_003023485.1| DEAD/DEAH box helicase [Geobacter sp. M21] gi|251777146|gb|ACT19727.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21] Length = 381 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 143/385 (37%), Positives = 227/385 (58%), Gaps = 13/385 (3%) Query: 1 MDFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59 M FA LGL P+++ A+ + + +P PIQ + IP VL+ D+ IA+TG+GKTASF+LP+ Sbjct: 1 MSFASLGLHPELLSAIAEQPEFKRPYPIQSEVIPAVLKGRDLIAIAKTGSGKTASFILPL 60 Query: 60 LTILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQ 115 L ++ A R R+ R L+L PTRELAAQ+ + ++ G + + + GG+ Q Sbjct: 61 LQLIHGQDAGERRRL-RALVLVPTRELAAQIEEVAKQLGSHLEPRVKTGAVFGGVAINPQ 119 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L +G ++LI TPGR+L+ + + ++++ LV+DEADR+ F +Q I +L+P Sbjct: 120 MIQL-KGIELLIATPGRLLELVAKNSVKLSSVATLVLDEADRLYAEDFQDEMQQILALLP 178 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQ LLFSAT+ E+++++ + L +P RIE+ +S E I S+K LL Sbjct: 179 AKRQNLLFSATIPPEVERLAASLLSDPMRIEIEAKASETELISQQIY--LVDSSRKGPLL 236 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + L++S D K ++F + +K N+ L G S H + Q R L+ FK G Sbjct: 237 RYLIKSGD-WKQVLVFTSSQKRADNVTRKLVANGISASTFHSGMSQGGRTAALAKFKTGE 295 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+DLA+RG+D+ + HV N+++P +Y HRIGRTGRA G A TL+ ED+ Sbjct: 296 LRVLVATDLASRGIDVQSLPHVVNYELPRSPIDYQHRIGRTGRAETAGVAVTLLCPEDLA 355 Query: 356 HIDAIEKLIEK---KVDWLNGDLSS 377 H IEK + + ++D DLS+ Sbjct: 356 HFKVIEKRLGQRLARIDTAELDLSA 380 >gi|58268226|ref|XP_571269.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21] gi|74684726|sp|Q5KFM6|DBP2_CRYNE RecName: Full=ATP-dependent RNA helicase DBP2-A gi|57227504|gb|AAW43962.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 540 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 15/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G ++ + G+ P+ IQ + P+ L D+ IA+TG+GKT SF LP + Sbjct: 112 FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVH 171 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P LIL PTRELA Q+ K+G++ + + GG P Q Sbjct: 172 INAQPLLAPGDG----PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 227 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L+RG ++ + TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 228 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 287 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCAL 234 RQTLLFSAT E+Q+++ +FL + ++ + + TA +H V T + K+ L Sbjct: 288 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCT--DFDKRSKL 345 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L + +IF K+ +L L G+ AIHG+ Q R +L+ FK G Sbjct: 346 LSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSG 405 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A+RGLD+ D+G+V N+D PN E+YIHRIGRTGRAGR G ++T ++ Sbjct: 406 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 465 Query: 355 KHI-DAIEKLIEKKVD 369 K + ++ L E K D Sbjct: 466 KAARELVQILRESKAD 481 >gi|58268224|ref|XP_571268.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21] gi|57227503|gb|AAW43961.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 527 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 15/376 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G ++ + G+ P+ IQ + P+ L D+ IA+TG+GKT SF LP + Sbjct: 99 FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVH 158 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P LIL PTRELA Q+ K+G++ + + GG P Q Sbjct: 159 INAQPLLAPGDG----PIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 214 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L+RG ++ + TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 215 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 274 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAE--TIEHCFVATYAQYSKKCAL 234 RQTLLFSAT E+Q+++ +FL + ++ + + TA +H V T + K+ L Sbjct: 275 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCT--DFDKRSKL 332 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L L + +IF K+ +L L G+ AIHG+ Q R +L+ FK G Sbjct: 333 LSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSG 392 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M+A+D+A+RGLD+ D+G+V N+D PN E+YIHRIGRTGRAGR G ++T ++ Sbjct: 393 RSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNS 452 Query: 355 KHI-DAIEKLIEKKVD 369 K + ++ L E K D Sbjct: 453 KAARELVQILRESKAD 468 >gi|16761502|ref|NP_457119.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140801|ref|NP_804143.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213420579|ref|ZP_03353645.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425267|ref|ZP_03358017.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585704|ref|ZP_03367530.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213616277|ref|ZP_03372103.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646345|ref|ZP_03376398.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854910|ref|ZP_03383150.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25385254|pir||AD0830 ATP-dependent RNA helicase SrmB [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503802|emb|CAD02792.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi] gi|29136426|gb|AAO67992.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 444 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 212/366 (57%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD+ + K+ +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E L++DEADRMLDMGF I++I + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ D ++ +E L++P + N PS+ H + + K ALL+ LL+ Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADNFEHKVALLKHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F +++ V L +L G + C + G + Q R + + +G + ++V Sbjct: 245 -QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIPDV HV NFD+P + Y+HRIGRTGRAGR G A +LV D + I Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKI 363 Query: 361 EKLIEK 366 + IE+ Sbjct: 364 GRYIEE 369 >gi|271501630|ref|YP_003334656.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii Ech586] gi|270345185|gb|ACZ77950.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586] Length = 450 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/349 (39%), Positives = 204/349 (58%), Gaps = 8/349 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLIL 78 G+ +PT IQ + IP ++ DV G A TGTGKTA+++LP+L +L+ R + PR LIL Sbjct: 23 GFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKSGPPRILIL 82 Query: 79 EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVAD + +L +A + GG+ + + DV++ T GR+L + Sbjct: 83 TPTRELAMQVADQARALAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIK 142 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSEN 197 +E L++DEADRMLDMGF I++I + +QT+LFSAT+ D +Q +E Sbjct: 143 EENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDFAER 202 Query: 198 FLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255 L +P +E + PS + ++ + A Q+ K ALL LL+ D ++ I+F ++ Sbjct: 203 LLNDPAEVEAD-PSRRERKKILQWYYRADDIQH--KTALLSHLLKQPDVTRS-IVFVRKR 258 Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315 + V L L G C + G + Q R + + EG ++++VA+D+AARGLDI DV Sbjct: 259 ERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDIQDVS 318 Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 HVFNFD+P ++ Y+HRIGRTGRAGR G A +LV D +D I + + Sbjct: 319 HVFNFDLPRTSDIYLHRIGRTGRAGRKGSAISLVEAHDYLLLDKIGRYL 367 >gi|261339970|ref|ZP_05967828.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC 35316] gi|288317887|gb|EFC56825.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC 35316] Length = 457 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 215/365 (58%), Gaps = 8/365 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY+ TP+Q +P +L+ DV A+TG+GKTA+F L +L ++ G + ++L+L Sbjct: 22 GYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQRIDAG---LFQTQSLVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 +G + ++ ++ LV+DEADRMLDMGF I + P RQTLLFSAT + + +S Sbjct: 139 KGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 P IE++T + IE F + K ALLQ++L SQ + ++FCN KK+ Sbjct: 199 QNAPLTIEIDTVDAL-PAIEQQFFEVSQK--GKIALLQKVL-SQHKPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 ++C +L G S ++HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QSVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 NF++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++W+N S Sbjct: 315 NFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWVNAPASVS 374 Query: 379 NPPLE 383 PL+ Sbjct: 375 IVPLD 379 >gi|120553901|ref|YP_958252.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter aquaeolei VT8] gi|120323750|gb|ABM18065.1| ATP-dependent RNA helicase DbpA [Marinobacter aquaeolei VT8] Length = 457 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 147/377 (38%), Positives = 215/377 (57%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGLS + + GY +PTP+Q + +PL L DV +AQTG+GKTA+F +P++ Sbjct: 4 FKALGLSAAMQANLDQLGYQQPTPVQAEAVPLALAGKDVIAMAQTGSGKTAAFGIPIIEA 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 ++ RV+ +L+L PTRELA QVA + + N+ V L GG+P Q L Sbjct: 64 IDPRCFRVQ---SLVLCPTRELADQVAKALRELARAKDNVKVLTLCGGVPIGPQIGSLSH 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH +G L ++ +++LV+DEADRMLDMGF + +I S P RQTL Sbjct: 121 GAHIVVGTPGRVDDHLRKGTLSLDGLKVLVLDEADRMLDMGFEEVVTSIVSQSPGGRQTL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++K+SE F P+ + V + ++T TIE F Q ++ A + LL S Sbjct: 181 LFSATWPPAIRKLSEQFQSKPEDVRVESKAATI-TIEESFYEI--QPDQRAAAVAALL-S 236 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++FC K++ L L + GFS ++HG++DQR R L F + ++VA Sbjct: 237 RFQPVSSLVFCTTKRDCDELSDELGRLGFSALSLHGDLDQRERDSALVRFANQSCTVLVA 296 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N + E + HR+GRTGRAG G A TL I +E Sbjct: 297 TDVAARGLDIKGLPLVINAEPARDPEVHTHRVGRTGRAGEQGHAVTLCTPRQGHKITRLE 356 Query: 362 KLIEKKVDWLNGDLSSL 378 + V W GD +L Sbjct: 357 AERGEPVLW--GDTEAL 371 >gi|261866893|ref|YP_003254815.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412225|gb|ACX81596.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 443 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 211/364 (57%), Gaps = 4/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FAD L+P+++ A+ GY +PT IQ +TIP ++ DV G A TGTGKTA+F+LP + Sbjct: 5 IQFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAI 64 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR L+L PTRELA QVA+ ++ L++A + GG+ ++ + Sbjct: 65 QHLLDYPRRKPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQNHGEIF 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR+L + +EIL+ DEADRML MGF + I + + +Q Sbjct: 125 NKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQ 184 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 TLLFSAT+ D L+ + L P +IE + I+ + + + K LL + Sbjct: 185 TLLFSATLEGDLLEDFAARTLNEPVKIEAEPSRRERKKIQQWYYHADS-HEHKFKLLARF 243 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ Q+ + GI+F +++ V L +L K+G + G + Q R + K G +++ Sbjct: 244 IE-QEQVSKGIVFVRRREEVRELAENLRKRGIRSAYLEGEMAQTQRNNAIDKLKNGVVKV 302 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +V++D++ARG+DI DV H+ NFD+P A+ Y+HRIGRT RAG+ G A + V D + + Sbjct: 303 LVSTDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLG 362 Query: 359 AIEK 362 I++ Sbjct: 363 KIKR 366 >gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277] gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277] Length = 427 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 217/372 (58%), Gaps = 8/372 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L +V+ + +++ TP+Q TIP +L+ DV AQTGTGKTA+++LP+L Sbjct: 1 MRFDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L G + +I+ PTRELA Q+ E + ++ + GG + +E Q + Sbjct: 61 DRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + GAD++I TPGR++ H N G ++++ V+DEADRMLDMGF I I +P + Sbjct: 121 GMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSS 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT++FSATM +++K++ + L++P +E+ ++ ++ AQ K +L++ Sbjct: 181 CQTVMFSATMPPKIRKLAASILRDPIEVEIAISRPPESIMQSAYICYEAQ---KLPILRK 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + Q K IIF + K V L +L K GF+V +H +++Q R +++ +FK G + Sbjct: 238 LFE-QSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVD 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI ++ V N+D+P+ E+Y+HRIGRT R G A T V++E+ Sbjct: 297 VLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSD 356 Query: 357 IDAIEKLIEKKV 368 IE + K V Sbjct: 357 FHKIETFLGKSV 368 >gi|320164395|gb|EFW41294.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864] Length = 875 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/453 (32%), Positives = 232/453 (51%), Gaps = 58/453 (12%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++ ++GL +++ + D GY +P+PIQ + IP+ LQ DV GIAQTG+GKTA+FV+P+L Sbjct: 440 NWNEIGLPTEILDIITDLGYTEPSPIQRQAIPIGLQNRDVIGIAQTGSGKTAAFVIPLLV 499 Query: 62 ILEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + R+R P +I+ PTRELA Q+ K+ L +IGG+ E Q Sbjct: 500 WVSRIPRRLREQTVDHGPFAIIMAPTRELAQQIEVETLKFANPMGLRTVCVIGGLSREEQ 559 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L G D++I TPGR++D L++N +V+DEADRM+DMGF P ++ + P Sbjct: 560 AFQLRLGCDIIIATPGRLIDILENRYLVLNRCTYIVLDEADRMIDMGFEPDLKKVLDFFP 619 Query: 176 FT-----------------------------------RQTLLFSATMTDELQKVSENFLQ 200 + RQT++F+ATM +Q++++ +++ Sbjct: 620 VSNMRPTDEPDEALDAVTYHTQKFENMDIDSIVKTRYRQTVMFTATMPPLVQRLAQQYMR 679 Query: 201 NPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVN 260 P + + + T + + V + +K+ LL+ L + + IF NQKK Sbjct: 680 KPAVVTIGSAGQTVDQVTQV-VEIMTEANKRKRLLEILGEEHEPPI--FIFVNQKKGCDL 736 Query: 261 LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320 L SLEK G+ V ++HG Q R L FK G + L+VA+D+A RG+DI DV V N+ Sbjct: 737 LAKSLEKLGYRVASLHGGKTQEQRQAALDGFKSGDLDLLVATDVAGRGIDIKDVSLVINY 796 Query: 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNP 380 D+ + Y HRIGRTGRAG+ G A T + ED +++++ +N Sbjct: 797 DMSKTVQEYTHRIGRTGRAGKKGLAITFLTNEDTGVYYELKQIL-------------INS 843 Query: 381 PLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 P+ K NH NP P + + D RK + Sbjct: 844 PVSKCPPDLMNHPEAQNP-PGQMSSKDLRKMGF 875 >gi|166710445|ref|ZP_02241652.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 574 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 223/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L P +V + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 11 FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q + Sbjct: 71 LLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130 Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP-- 175 L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 TRQTLLFSAT++ + +++ + P+++ V T + TA + + +K LL Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDEEKQTLL 248 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL + + ++F N K V + LE+ G+ V + G++ Q+ R +L+ F++G Sbjct: 249 LGLLSRSEGART-MVFVNTKVFVERVARILERHGYRVGVLSGDVPQKKRESLLNRFQKGQ 307 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 367 Query: 356 HIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 368 SLPDIEAYIEQKI 380 >gi|330896875|gb|EGH28465.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 445 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ R +IL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+ N G L + ++E+LV+DEADRMLDMGF ++ + QT+ Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGGCAGREQTM 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L++P+ ++VN+ S A H + K+ L L Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T + IIF N K L L + +HG+ DQ+ R + K+G ++MV Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P ++Y+HR+GRTGRAG G A +L+ D + ++ Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358 Query: 361 EKLIEKKVD 369 E+ +++ + Sbjct: 359 ERYLKQSFE 367 >gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana] gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana] Length = 456 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 232/418 (55%), Gaps = 18/418 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ ++V A G+ P+ IQ + +P L+ DV G+AQTG+GKT +F +P+L Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70 Query: 63 L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L +KGR +L PTRELA Q+A+ FE G + +L A+L+GGI Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L + V++ TPGR+ DH + K + +++ LV+DEADR+L+ F + I Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 +P R+T LFSATMT +++K+ L+NP +IE + ST +T++ + A+Y K C Sbjct: 191 EIPLERETFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKY-KDC 249 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L+ L + ++ +IF L L GF I G + Q R+ L+ FK Sbjct: 250 YLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++V +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G +LV + Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 +++ IEKLI KK+ + + LE++ A+K + + K +G +R+ Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRR 420 >gi|156391127|ref|XP_001635620.1| predicted protein [Nematostella vectensis] gi|156222716|gb|EDO43557.1| predicted protein [Nematostella vectensis] Length = 518 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 135/355 (38%), Positives = 204/355 (57%), Gaps = 3/355 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA G +++ ++ Y +PT IQ + +P+ L D+ GIA+TG+GKTA+F+ P L Sbjct: 106 ISFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPAL 165 Query: 61 T-ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 I+++ +V P LI PTREL Q+ ++GK YN+ V + GG Q+K Sbjct: 166 VHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKA 225 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ GA++++ TPGR++DH ++ + LV DEADRM DMGF P +++I + V R Sbjct: 226 LQEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDR 285 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +++ + + L +P R+ + E + V + K L Q Sbjct: 286 QTLLFSATFKKKVEHLCRDILVDPVRVVIGELGEANEDVTQ-IVHIFNSMPSKWEWLTQN 344 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L S + + +IF +K N L +L K F V +HG++DQ R K+L FK+ I + Sbjct: 345 LVSFASAGSVLIFVTKKLNSEELATNLRKNDFEVALLHGDMDQFERSKVLGQFKKREIPI 404 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +VA+D+AARGLDIP + V N+DV + HRIGRTGRAG G A+TL+ + D Sbjct: 405 LVATDVAARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGNAYTLLTQSD 459 >gi|67972435|ref|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [Mus musculus] gi|76364172|sp|Q4FZF3|DDX49_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName: Full=DEAD box protein 49 gi|71051022|gb|AAH99554.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus] Length = 480 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 154/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++GLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH M I+ LV+DEADR+L+ G F ++ I + VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E T E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q+ QD +++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 239 VQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I++++ L + + + L ++++ R+ I +++ FD +K+ Sbjct: 359 LLHAIEEQIKQQLAELVVEEAEVLQILTQVNV-----VRRECEIKLEASHFDEKKE 409 >gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3] gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3] Length = 462 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 142/366 (38%), Positives = 214/366 (58%), Gaps = 12/366 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ L LSP A+ GY TP+Q +++PLVL+ DV A+TG+GKTA+F + +L Sbjct: 5 DFSALPLSPAQFEALTALGYEHMTPVQAQSLPLVLKGRDVIARARTGSGKTAAFGIGLLQ 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 + R + L+L PTRELA QV+ + N+ + L GG PF Q LE Sbjct: 65 TINP---RFFGVQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKPFGPQVGSLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGRILDH R L ++ +++LV+DEADRMLDMGF +++I S P +RQT Sbjct: 122 HGAHIVVGTPGRILDHLQRKTLSLDGLKVLVLDEADRMLDMGFADSMESIISETPKSRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCF--VATYAQYSKKCALLQQ 237 LLFSAT + ++K+S + ++P + V+ A E IE F V + + + AL + Sbjct: 182 LLFSATYPENIRKMSASIQRSPTMVTVDEDVGHADEVIEQLFFEVQKHERNTTLLALFEH 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + N ++FCN KK + L++ AIHG+++QR R ++L F + Sbjct: 242 YRPA-----NAVVFCNTKKQCDEVAKILQEYDIEARAIHGDLEQRERDQVLVQFSNNSCP 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + V N+++P + Y+HRIGRTGRAG G A ++V + + I Sbjct: 297 VLVATDVAARGLDIKALAMVINYELPRDPDVYVHRIGRTGRAGETGLAMSIVIPSETQRI 356 Query: 358 DAIEKL 363 IE+ Sbjct: 357 RKIEEF 362 >gi|268572017|ref|XP_002641212.1| Hypothetical protein CBG09074 [Caenorhabditis briggsae] Length = 732 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 149/426 (34%), Positives = 227/426 (53%), Gaps = 49/426 (11%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++ + G +V AV + GY++PTPIQ + IP+ LQ DV G+A+TG+GKTA+F+LP+L Sbjct: 304 NWEESGFPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 363 Query: 62 IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E+ + P +IL PTRELA Q+ + K+GK + +IGG E Q Sbjct: 364 WITSLPKIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQ 423 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL G +V+I TPGR++D LL+N +++DEADRMLDMGF P +Q I +P Sbjct: 424 GMKLRMGVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLP 483 Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM+ +++++ +L+ P + + Sbjct: 484 ASNMKKDTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNA 543 Query: 211 SSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269 E +E ++ T + KK LL+ + SQ I+F N+K +L L K G Sbjct: 544 GKPTERVEQVVYMITKDRKPKK--LLEVI--SQHDKYPIIVFVNRKHGADSLAKGLAKVG 599 Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329 +HG Q +R L K+ +++VA+D+A RG+DI DV V N+D+ E+Y Sbjct: 600 KKTSVLHGGKGQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDY 659 Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 HRIGRTGRAG+HGKA T + +D + D + L+E + S PP ++A Sbjct: 660 THRIGRTGRAGKHGKAITFLTADDTAVYYDLKQCLLESPI--------SSCPP----ELA 707 Query: 389 QHNHAR 394 H AR Sbjct: 708 NHEAAR 713 >gi|307190551|gb|EFN74538.1| ATP-dependent RNA helicase DDX42 [Camponotus floridanus] Length = 769 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/356 (38%), Positives = 212/356 (59%), Gaps = 8/356 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F G ++ + Y +PTPIQ + +P L D+ GIA+TG+GKTA+F+ PML Sbjct: 256 FGHFGFDDALMKTIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVH 315 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P LIL PTREL+ Q+ +K+GK YN+ V GG Q+K LE Sbjct: 316 IMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALE 375 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA++++ TPGR++D + + LV+DEADRM DMGF P +++I + V RQT Sbjct: 376 SGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 435 Query: 181 LLFSATMTDELQKVSENFLQNPKRI-EVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT +++K++ + L +P RI + + + + +H + K LLQ L+ Sbjct: 436 LLFSATFKKKVEKLARDVLTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNLV 495 Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + S ++ +IF +K N L ++L+ + F V +HG++DQ R K+++ FK+ + Sbjct: 496 EFLSAGSL---LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVS 552 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TLV ++D Sbjct: 553 TLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLVTEKD 608 >gi|148696858|gb|EDL28805.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus] Length = 545 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 154/416 (37%), Positives = 234/416 (56%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++GLS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 8 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ AQ +L R Sbjct: 68 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 124 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH M I+ LV+DEADR+L+ G F ++ I + VP R Sbjct: 125 PHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARR 184 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E T E ++ ++ + K A L L Sbjct: 185 QTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKV--KDAYLVHL 242 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q+ QD +++ IIF N K LC L K F A+H + Q+ R L+ FK Sbjct: 243 VQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 302 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 303 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 362 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I++++ L + + + L ++++ R+ I +++ FD +K+ Sbjct: 363 LLHAIEEQIKQQLAELVVEEAEVLQILTQVNV-----VRRECEIKLEASHFDEKKE 413 >gi|78778139|ref|YP_394454.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251] gi|78498679|gb|ABB45219.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM 1251] Length = 411 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 147/393 (37%), Positives = 229/393 (58%), Gaps = 15/393 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGLS ++ A+ G+ KPTPIQ + IPLVL+RHD+ AQTG+GK+ASF+LP+L Sbjct: 1 MPFSKLGLSQNILQALKQNGFTKPTPIQERVIPLVLERHDIMAKAQTGSGKSASFILPIL 60 Query: 61 TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEA 114 +L + G+A++++ L+L PTREL Q+ + F +G + V +IGG Sbjct: 61 ELLSRDSYEGKAKIKV---LVLTPTRELTQQIVEAFNTFGAFMSKKPKVVGVIGGEGIGE 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q +++G D+L+ T GR LD ++ ++++++++ V+DEAD+MLD GF ++ I + Sbjct: 118 QLFNIQKGCDILVATSGRFLDILSKKQMILSHVDFFVLDEADKMLDFGFAEELELILEAL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ LLFSAT ++ ++ +QNP + V T E++ A + L Sbjct: 178 GQKRQNLLFSATYPPKMLFIASKIMQNPIEVSVEDEEPTVESVVQR--AILVSRENRAPL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L+ LL+S+ + I+F + K+ N+ K GFS + HG++ Q R L FK Sbjct: 236 LRHLLKSE-KYELVIVFMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKTK 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +Q++ A+DL +RGLDI D+ V NFD+P + +YIHRIGRT RAG+ G A + + ED Sbjct: 295 KLQILFATDLVSRGLDINDITCVINFDLPRSSADYIHRIGRTARAGKAGMAISFIDHEDE 354 Query: 355 KHIDAIEKL--IEKKVDWLNG-DLSSLNPPLEK 384 H IEK I K + + G +L++ P EK Sbjct: 355 AHFRLIEKRSNIRLKREQIEGFELTTEAPKREK 387 >gi|28868793|ref|NP_791412.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato str. DC3000] gi|213969602|ref|ZP_03397738.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato T1] gi|28852032|gb|AAO55107.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato str. DC3000] gi|213925698|gb|EEB59257.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato T1] Length = 453 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 10 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 69 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ R +IL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 70 L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 128 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+ N G L + ++E+LV+DEADRMLDMGF ++ + QT+ Sbjct: 129 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 188 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L++P+ ++VN+ S A H + K+ L L Sbjct: 189 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 246 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T + IIF N K L L + +HG+ DQ+ R + K+G ++MV Sbjct: 247 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P ++Y+HR+GRTGRAG G A +L+ D + ++ Sbjct: 307 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 366 Query: 361 EKLIEKKVD 369 E+ +++ + Sbjct: 367 ERYLKQSFE 375 >gi|237713244|ref|ZP_04543725.1| ATP-dependent RNA helicase [Bacteroides sp. D1] gi|262406616|ref|ZP_06083165.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646166|ref|ZP_06723822.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC 2a] gi|294807864|ref|ZP_06766646.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens SD CC 1b] gi|229446711|gb|EEO52502.1| ATP-dependent RNA helicase [Bacteroides sp. D1] gi|262355319|gb|EEZ04410.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638495|gb|EFF56857.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC 2a] gi|294444926|gb|EFG13611.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens SD CC 1b] Length = 420 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 217/371 (58%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ + IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G+ +I+ PTRELA Q+ E + ++ + GG I FE Q K Sbjct: 61 NKLSEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ L P I++ + I+ +V Q K +++ Sbjct: 181 RQTIMFSATMPAKIQQLANTILNEPSEIKLAVSKPAEKIIQAAYVCYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + + I+F + K V + +L+ +V +H +++Q R ++ FK G I Sbjct: 238 LFMDE-VPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V NFDVP+ +E+Y+HRIGRT RA G A T + +++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356 Query: 358 DAIEKLIEKKV 368 +IE +EK++ Sbjct: 357 KSIENFLEKEI 367 >gi|259906863|ref|YP_002647219.1| ATP-dependent RNA helicase RhlB [Erwinia pyrifoliae Ep1/96] gi|224962485|emb|CAX53940.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96] gi|283476655|emb|CAY72483.1| putative ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163] gi|310766111|gb|ADP11061.1| ATP-dependent RNA helicase RhlB [Erwinia sp. Ejp617] Length = 430 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 151/398 (37%), Positives = 227/398 (57%), Gaps = 24/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ G+ TPIQ +P L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +GR +V PR LIL PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAPEGR-QVNQPRALILAPTRELAVQIHADAEPLAQISGLKIGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE G DVLI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLESGVDVLIATTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q L LFSAT++ +++++ + N + +EV T I E F Y +K L Sbjct: 190 NQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELF---YPSNEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ L++ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 247 LQTLIE-EEWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG +G + +L +E Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA 365 Query: 355 KHIDAIEKLIEKKV-------DWLNGDLSSLNPPLEKI 385 ++ AIE+ I + D L GDL PP +++ Sbjct: 366 LNLPAIEEYIGHSIPVSRYNSDALMGDL----PPPKRL 399 >gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia] Length = 451 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 143/386 (37%), Positives = 221/386 (57%), Gaps = 16/386 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ ++ A GY PTPIQ +++P LQ+ D+ G+A+TG+GKT +F LP I Sbjct: 14 FKELGVCEELSSACEKLGYKIPTPIQQQSLPYTLQKKDIIGLAETGSGKTLAFGLP---I 70 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ A + LIL PTREL Q+ ++F+ G + L +++GG+ AQ K L + Sbjct: 71 LQHLLANPQPYYALILSPTRELCVQIQEHFQAIGASIALKSVVILGGMDPLAQAKALAQK 130 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPG+IL H K + ++ LV+DEAD++L+M F I I ++P R T Sbjct: 131 PHIIIGTPGKILYHLENTKGFNLKQLKFLVLDEADKLLNMDFEREINAILDIIPKERNTY 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT+++ K+ L++P +IEV++ T T++ ++ +Y K L LL Sbjct: 191 LFSATMTNKVSKLQRASLKDPVKIEVSSKYQTVSTLQQNYLFVPDKY--KETYLVYLLNE 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I+F + + + L GF AIHG + Q R+ + FK L++A Sbjct: 249 LAGL-TSIVFVATCQMAIKITLLLRNLGFQAIAIHGQMSQAKRLSSFNKFKSKESNLLIA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDIP V V NFD+P A+ Y+HR+GRT RAG+ GKA +LV + D++ IE Sbjct: 308 TDVASRGLDIPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQYDVEMYQKIE 367 Query: 362 KLIEKKVDWLNGDLSSLNPPLEKIDI 387 +LIEK++ PLE+ D+ Sbjct: 368 QLIEKELSQY---------PLEESDV 384 >gi|189465693|ref|ZP_03014478.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM 17393] gi|189433957|gb|EDV02942.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM 17393] Length = 428 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 220/371 (59%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ +V+ A+ + + TPIQ K+IP++L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MKFSELQLNDQVLDALEAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +++ PTRELA Q+ E + ++ + GG + FE Q K Sbjct: 61 NKLSEGNHPEDAINCIVMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ L NP +++ + ++ +V Q K +++ Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPAEVKLAVSRPAEKIVQAAYVCYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q T + IIF + K V + +L+ +V +H +++Q R +++ FK G + Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRVN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T + +++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356 Query: 358 DAIEKLIEKKV 368 IE +EK++ Sbjct: 357 KQIENFLEKEI 367 >gi|297797303|ref|XP_002866536.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp. lyrata] gi|297312371|gb|EFH42795.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp. lyrata] Length = 588 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 143/384 (37%), Positives = 215/384 (55%), Gaps = 15/384 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D ++ A+ G+ +PTPIQ + P+ L+ D+ GIA+TG+GKT +++LP L Sbjct: 164 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 223 Query: 63 LEKGRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + A+ R+ P LIL PTRELA Q+ + K+G + + GG P Q + Sbjct: 224 VS---AQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 280 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L RG +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 281 DLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPD 340 Query: 178 RQTLLFSATMTDELQKVSENFLQNP-KRIEVNTPSSTAETIEHC--FVATYAQYSKKCAL 234 RQTLL+SAT E++ ++ FL++P K I +T ++I V T +Y++ L Sbjct: 341 RQTLLWSATWPREVESLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 400 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L+QL+ + IF K+ + L G+ AIHG+ Q R ++L+ FK G Sbjct: 401 LKQLMDGSKIL----IFVETKRGCDQVTRQLRMDGWPALAIHGDKTQPERDRVLAEFKSG 456 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +M A+D+AARGLD+ D+ V N+D PN E+YIHRIGRTGRAG G AFT ++ Sbjct: 457 RSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNA 516 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSL 378 K + K++++ + LS+L Sbjct: 517 KFARELIKILQEAGQVVPPTLSAL 540 >gi|307109616|gb|EFN57854.1| hypothetical protein CHLNCDRAFT_6836 [Chlorella variabilis] Length = 461 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 146/354 (41%), Positives = 205/354 (57%), Gaps = 12/354 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G ++ A+ AGY KPT IQ + +P L DV GIA+TG+GKTA+FVLPM+ Sbjct: 65 FKQCGFDGPLMAAITKAGYQKPTAIQAQALPAALCGRDVLGIAKTGSGKTAAFVLPMIVH 124 Query: 63 ------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L+KG P +I+ PTRELA Q+ ++ K YNL VA GG+ Q Sbjct: 125 IMDQPELQKGEG----PIGVIVAPTRELAEQIHKETRRFSKAYNLGVAAAFGGLSKHQQF 180 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ G +V +CTPGR++D M LV DEADRM DMGF P +++I + Sbjct: 181 KDLKAGCEVAVCTPGRMIDLIRMKACNMKRATYLVFDEADRMFDMGFEPQVRSIMGQIRP 240 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSATM ++++++ + L +P RI V E I+ + SK+ LL Sbjct: 241 DRQTLLFSATMPRKVERLAGDALTSPVRITVGEVGGANEDIKQVVEVVHDLGSKQKWLLD 300 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L + D + ++F NQK V L +L+ G V AIHG++DQ +RM L++FK G Sbjct: 301 RLQRFIDD-GDVLVFANQKARVDELAAALQAAGAKVAAIHGDMDQHTRMHTLADFKAGAY 359 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLV 349 +VA+D+AARGLDI + V N+D + ++HRIGRTGRAG + G A+TL+ Sbjct: 360 HALVATDVAARGLDIKSIKTVVNYDAAKDIDTHVHRIGRTGRAGDKDGVAYTLL 413 >gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895] gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895] Length = 486 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/379 (39%), Positives = 217/379 (57%), Gaps = 14/379 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P+++ A + + KPTPIQ K IP LQ D+ G+AQTG+GKTA+F +P+L Sbjct: 68 FRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNR 127 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 128 LWHDQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRK 184 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I +P R T Sbjct: 185 PHIIIATPGRLMDHLENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRILKNIPTKGRTT 244 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++ K+ L NP + V+ T +T+ + K L LL Sbjct: 245 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGL--KNTFLIYLL- 301 Query: 241 SQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ K I+F K N + LC+ LE FS A+HG+++Q R L FK G Sbjct: 302 NEFIGKTTIVFTRTKANAERISGLCNLLE---FSATALHGDLNQNQRTGALDLFKAGKKS 358 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV++ D++ I Sbjct: 359 ILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELI 418 Query: 358 DAIEKLIEKKVDWLNGDLS 376 IE+++ KK+ N D S Sbjct: 419 LRIEEVLGKKLPKENVDKS 437 >gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697] gi|217986775|gb|EEC53108.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697] Length = 428 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 222/371 (59%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ ++IP++L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MKFSELKLNDNVLEALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +++ PTRELA Q+ E + ++ + GG + FE Q + Sbjct: 61 NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++++ L NP +++ + ++ +V Q K +++ Sbjct: 181 RQTIMFSATMPAKIQQLAKSILNNPAEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q T + IIF + K V + +L++ +V +H +++Q R +++ FK G I Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V +++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356 Query: 358 DAIEKLIEKKV 368 IE +EK++ Sbjct: 357 KGIENFLEKEI 367 >gi|221108888|ref|XP_002166443.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 789 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 211/383 (55%), Gaps = 36/383 (9%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D L ++ +L GY PTPIQ + IP+ L D+ GIA+TG+GKTA+FV+P+L Sbjct: 363 WRDSSLPNDILDVILSLGYTDPTPIQRQAIPIGLMNRDIIGIAETGSGKTAAFVIPLLVW 422 Query: 63 L----EKGRARVR--MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + E R V P +IL PTRELA Q+ + K+ K + +IGG+ E Q Sbjct: 423 ITGLPESDRQSVSDNGPFAIILAPTRELAQQIEEETIKFAKKLGIRTVAVIGGLSREDQG 482 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L+++ +V+DEADRM+DMGF P +Q I +P Sbjct: 483 FQLRLGCEIVIATPGRLIDVLENRYLVLSQCSYVVMDEADRMIDMGFEPDVQKILEHLPV 542 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++++ +L+ P + + + Sbjct: 543 TNIKPDTEEAEDVNVIAKNYSSKDKYRQTVMFTATMPPVVERLARTYLRRPAIVTIGSAG 602 Query: 212 STAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGF 270 + +E ++ + AQ KK LL+ L D ++F NQKK L SLEKQGF Sbjct: 603 KPVDRVEQKVYMLSAAQKKKK--LLEILSNKLDP--PVLVFVNQKKGADVLAKSLEKQGF 658 Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330 S +HG Q R L++ KEG ++VA+D+A RG+DI DV V N+D+ E+Y Sbjct: 659 SATTLHGGKGQEQREFALNSLKEGNKDILVATDVAGRGIDIKDVSMVINYDMAKNIESYT 718 Query: 331 HRIGRTGRAGRHGKAFTLVAKED 353 HRIGRTGRAG+ G A T + +ED Sbjct: 719 HRIGRTGRAGKSGIAVTFLTQED 741 >gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Acyrthosiphon pisum] Length = 450 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 219/368 (59%), Gaps = 9/368 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F DLG++ V+C + + PT IQ + IP+ LQ D+ G+A+TG+GKT +F +P+L Sbjct: 21 FKDLGVT-DVLCETCETLKWKTPTKIQKEAIPVALQGKDIIGLAETGSGKTGAFAIPILQ 79 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R LIL PTRELA Q+++ E G + + A+++GG+ AQ+ L + Sbjct: 80 ALLENPQRYF---ALILTPTRELAFQISEQIEALGSSIGVKCAVIVGGMDMMAQSLMLAK 136 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR++DH K + N+++LV+DEADR+L+M F + I ++P R+T Sbjct: 137 KPHIIIATPGRLVDHLENTKGFSLRNLKVLVMDEADRILNMDFEEEVDKILKVIPRERRT 196 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++QK+ L +P R+EV+T T E ++ ++ +Y K L+ L Sbjct: 197 FLFSATMTKKVQKLHRASLVDPVRVEVSTKFQTVEQLQQYYIFIPVKY-KDVYLVHIL-- 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++F V + L G +HG + Q R+ L+ FK + +++ Sbjct: 254 NEMAGNSFMVFMATCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSILI 313 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ++D+++RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA TLV + DI+ I Sbjct: 314 STDVSSRGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRI 373 Query: 361 EKLIEKKV 368 E+LI KK+ Sbjct: 374 EQLISKKL 381 >gi|18424420|ref|NP_568931.1| DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] gi|108861883|sp|Q8GY84|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10 gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana] Length = 456 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 232/418 (55%), Gaps = 18/418 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ ++V A G+ P+ IQ + +P L+ DV G+AQTG+GKT +F +P+L Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70 Query: 63 L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L +KGR +L PTRELA Q+A+ FE G + +L A+L+GGI Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L + V++ TPGR+ DH + K + +++ LV+DEADR+L+ F + I Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 +P R+T LFSATMT +++K+ L+NP +IE + ST +T++ + A+Y K C Sbjct: 191 EIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKY-KDC 249 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L+ L + ++ +IF L L GF I G + Q R+ L+ FK Sbjct: 250 YLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++V +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G +LV + Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 +++ IEKLI KK+ + + LE++ A+K + + K +G +R+ Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRR 420 >gi|193222330|emb|CAL61847.2| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 464 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 213/379 (56%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L LSP ++ + GY + T IQ +++P++LQ D+ A+TG+GKTA+F + ML Sbjct: 6 FAALALSPPMLSNLDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L ++ L++ PTRELA QV++ + + N+ + L GG P Q LE Sbjct: 66 LNPTWFAIQ---GLVICPTRELADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH +R + ++ ++ LV+DEADRM+DMGF I I S P RQTL Sbjct: 123 GAHIVVGTPGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D+++K S FL++P ++V ++ + + Y + A L + + Sbjct: 183 LFSATYPDDIRKASAEFLRDPVEVKVEAQHDDSQIEQRFYEVGYDDRNAAVATLLKHYRP 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K + L L QGFS A++G ++QR R +IL F + ++VA Sbjct: 243 VSTLA----FCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI +G V N DV E +IHRIGRTGR G A +L A + K + IE Sbjct: 299 TDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIE 358 Query: 362 KLIEKKVDWLNGDLSSLNP 380 + +K W DL S P Sbjct: 359 EYQQKPAQWF--DLKSAEP 375 >gi|322834137|ref|YP_004214164.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] gi|321169338|gb|ADW75037.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] Length = 442 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/353 (38%), Positives = 204/353 (57%), Gaps = 4/353 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L +++ A+ D GY +PT IQ + IP + DV G A TGTGKTA+F+LP L Sbjct: 6 FSELELDERLIEALGDKGYSRPTVIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVA+ + K+ L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVAEQARELAKHTELDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + IE L++DEADRMLDMGF I+ I++ + +QTL Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFAQDIETISAEARWRKQTL 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ E +++ +E L P IE + + I + + K +L LL+ Sbjct: 186 LFSATLEGEAIREFAERILTEPVEIEADPSRRERKKILQWYYRA-DDLAHKTRMLIHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +D K+ +IF +++ V L L + G + C + G + Q R + + E + ++V Sbjct: 245 QEDVTKS-VIFVRKRERVHELVAWLREAGINSCYLEGEMVQVKRTEAVKRMVEDRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+AARGLDI D+ HVFNFD+P A+ Y+HRIGRTGRAGR G A + V D Sbjct: 304 ATDIAARGLDINDISHVFNFDLPLTADIYLHRIGRTGRAGRKGTAISFVEAHD 356 >gi|307825386|ref|ZP_07655605.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] gi|307733561|gb|EFO04419.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] Length = 451 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 142/397 (35%), Positives = 227/397 (57%), Gaps = 32/397 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F++L LS ++ ++ DAG+ TPIQ + +PL L+ D+ G AQTGTGKTA+F+L Sbjct: 11 FSNLELSDSILRSLKDAGFNHCTPIQRQALPLSLRGKDIAGQAQTGTGKTATFLLATFQH 70 Query: 61 ------------------------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96 ++ K + +++ PR +IL PTRELA Q+ + + G Sbjct: 71 LINDAEDDAEAQTNADIETEKTAPNVVAKSK-QIKYPRAIILAPTRELAIQIHKDALQLG 129 Query: 97 KNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD 156 K+ NL +AL+ GG ++ Q L+ D++I TPGRI+D + + ++N+++ V+DEAD Sbjct: 130 KHLNLKLALIYGGTDYQKQLDSLKSNVDIIIGTPGRIIDFYRQNAFTLDNVKVTVMDEAD 189 Query: 157 RMLDMGFIPYIQNITSLVPFTRQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214 RM D+GFI I+ + +P Q L LFSAT++ ++ +++ + NP I + T T+ Sbjct: 190 RMFDLGFIKDIRFLLRRMPPPEQRLNMLFSATLSYKVTELAYEHMNNPVLIRIETEEVTS 249 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 + I+ A +K LL +L +Q + IIF N K+ L +L G+ A Sbjct: 250 KAIQQS--AFCPSNEQKIPLLVGIL-NQHQPQRSIIFVNTKRCAERLDDTLNANGYKTAA 306 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 + G++ Q R ++LS+F+E I L++A+D+AARGL I DV HV N+D+P E+Y+HRIG Sbjct: 307 LSGDVPQDKRQRLLSDFQENKITLLIATDVAARGLHIADVSHVINYDLPQDVEDYVHRIG 366 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371 RT R G G A + + +E + IE+ IE+K+ L Sbjct: 367 RTARFGASGVAISFICEEYAYSMPDIEEYIEQKIPVL 403 >gi|213963177|ref|ZP_03391435.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga sputigena Capno] gi|213954261|gb|EEB65585.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga sputigena Capno] Length = 584 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 214/364 (58%), Gaps = 8/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F LGL ++ A+ D G+ P+ IQ K IP +L D+ +AQTGTGKTA+F P+L Sbjct: 4 FEQLGLDEPILKAISDMGFEIPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +++ R+ + LIL PTREL Q+A Y K + V + GG E Q + L+ Sbjct: 64 LIDTDS---RVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQARSLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA +++ TPGR+ D R + +++I V+DEAD ML+MGF I I S P + T Sbjct: 121 KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQEKST 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM +E+ K++ F++ P I V T + T++H + ++ + L++L Sbjct: 181 WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA--LKRLAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + + ++FC K++ + L + G++ A+HG++ Q R ++ +F+ IQ++V Sbjct: 239 ANPDIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV ++ +P+ E Y HR GRTGRAG+ G + ++ K ++K I I Sbjct: 298 ATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKIKTI 357 Query: 361 EKLI 364 EK+I Sbjct: 358 EKMI 361 >gi|127513705|ref|YP_001094902.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126639000|gb|ABO24643.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 451 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 212/369 (57%), Gaps = 6/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L L P + A GY T +Q K IP L D+ AQTGTGKTA+F +L Sbjct: 1 MNFDALPLDPLLAQAAKACGYETLTQVQAKVIPTALAGRDLMACAQTGTGKTAAFSFVLL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L + RA + LIL PTRELA QVAD+ +Y + LT + GG Q K L Sbjct: 61 QRLLNQPRA-IGQLSALILTPTRELAIQVADSISRYSQFTELTTLAVYGGANINPQRKAL 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 RG D+L+ TPGR+ D + L + ++ L++DEADRMLDMGF+ I+ L+ + Sbjct: 120 ARGVDILVATPGRLFDLLGQHDLSLETVDQLIVDEADRMLDMGFVRDIERTKRLLCVSHS 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSAT T E++ ++ L NP+ I V T +S+ IE A+ +K LL +L+ Sbjct: 180 TMLFSATFTPEVKALATKMLDNPEWINV-TSASSGPQIEQKIYPLDAR--RKAELLAELI 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F N K++ L L+ G HG+ Q +R + L FK G ++++ Sbjct: 237 -GRNNWQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQFKAGELRVL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N ++P+ ++Y+HRIGRTGRAG G + + VAK+D + A Sbjct: 296 VATDVAARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVAKQDETALGA 355 Query: 360 IEKLIEKKV 368 IE LI K + Sbjct: 356 IEALIGKTL 364 >gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] Length = 428 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 221/371 (59%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ ++IP++L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MKFSELKLNDNVLEALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +++ PTRELA Q+ E + ++ + GG + FE Q + Sbjct: 61 NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++++ L NP +++ + ++ +V Q K ++ Sbjct: 181 RQTIMFSATMPAKIQQLAKSILNNPAEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIHS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q T + IIF + K V + +L++ +V +H +++Q R +++ FK G I Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V +++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356 Query: 358 DAIEKLIEKKV 368 IE +EK++ Sbjct: 357 KGIENFLEKEI 367 >gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293] gi|74669652|sp|Q4WJE9|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3 gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293] Length = 472 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/371 (37%), Positives = 217/371 (58%), Gaps = 14/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ ++ A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 111 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P++ LIL PTRELA Q++ +FE G N+ A+++GG+ +Q+ L Sbjct: 112 ----QALMENPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIAL 167 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + ++ LV+DEADR+LDM F P + I ++P R Sbjct: 168 GKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRER 227 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237 +T LFSATM+ +++ + L NP R+ V++ T T+ ++ + + K L Sbjct: 228 RTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYL--FLPHKHKDIYLVY 285 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ ++ IIF + L GF +HG + Q +R+ L F+ + Sbjct: 286 LL-NEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRD 344 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V NFD+P ++ Y+HR+GRT RAG+ G A + V + D++ Sbjct: 345 ILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIW 404 Query: 358 DAIEKLIEKKV 368 IE + KK+ Sbjct: 405 LRIEGALGKKL 415 >gi|330447635|ref|ZP_08311283.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491826|dbj|GAA05780.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 461 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 218/368 (59%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P ++ + GY TPIQ +++PL+L+ DV +TG+GKTA+F L +L Sbjct: 6 FSTLNLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R RV+ TL+L PTRELA QVA + + +N+ V L GG+PF Q LE Sbjct: 66 LRVKRFRVQ---TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ +H +G L ++ + LV+DEADRML+MGF + I P RQTL Sbjct: 123 GAHIIVGTPGRVEEHIRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIEGAPRDRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D++ +++ ++NP +++V + + +H + + + +LL S Sbjct: 183 LFSATYPDQIASIAKRIMRNPVQVKVESNHDNSSISQHFYKVDNNEERMRAV---RLLLS 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ ++FCN K+ + LE GFS A+HG+++QR R + L F + ++VA Sbjct: 240 QHRPESCVVFCNTKREAQEISDDLEAYGFSAIALHGDLEQRERDRTLVLFANKSRSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI ++ V N+ + E ++HRIGRTGRAG G A +L + ++ + +E Sbjct: 300 TDVAARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLE 359 Query: 362 KLIEKKVD 369 +++ ++ Sbjct: 360 DYLDRPIE 367 >gi|254515296|ref|ZP_05127357.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3] gi|219677539|gb|EED33904.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3] Length = 428 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 213/373 (57%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L P ++ + + G+ +PIQ + +P LQ HD G AQTGTGKTA+F++ + Sbjct: 47 FHDLDLHPTLMHGIAEIGFEYCSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAFLITIFDD 106 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L +G + PR L++ PTREL Q+A + GK L LIGG+ ++ Q + Sbjct: 107 LLRNPHEGERFLGEPRALVIAPTRELVMQIAADAADLGKYTGLNTCTLIGGMDYQKQLNQ 166 Query: 119 LERGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L R D+++ TPGR++D R L+++ +E+LV+DEADRMLDMGFIP ++ I P Sbjct: 167 LGREVVDLVVATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHK 226 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT T ++ +SE + + +E+ ++++ A ++ +L Sbjct: 227 DYRQTLLFSATFTQDIINLSEQWTTDAVTVEIEPDHVATDSVDQRIY--LASSEERFRIL 284 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 LL+S D + I+F N++ V L L K + + G I Q R K L FK+G Sbjct: 285 VNLLRSDDAT-SVIVFANRRDQVRRLYERLRKASITCGMLSGEIAQAKRTKTLDQFKKGE 343 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+A RG+ + V HV N+++P E+Y+HRIGRTGRAG G + + +++D Sbjct: 344 ISVLVATDVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGTSISFASEDDAF 403 Query: 356 HIDAIEKLIEKKV 368 + +E L+ V Sbjct: 404 LLPDLEALLGAPV 416 >gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC 6260] Length = 475 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/366 (37%), Positives = 210/366 (57%), Gaps = 13/366 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L L P+++ A+ Y KPTPIQ IP L+ D+ G+AQTG+GKTA+F +P+L Sbjct: 66 FLELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 125 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + R L+L PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 126 LWEAQ---RPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRK 182 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +L+ TPGRI+DH K + +++ LV+DEADR+LDM F P + I ++P R T Sbjct: 183 PHILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTY 242 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT+++ K+ L P ++ V+ TA+ + + Y K L LL + Sbjct: 243 LFSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGY--KNTFLIHLL-N 299 Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + K+ I+F C + L L GFS +HG + Q R+ L+ FK G + Sbjct: 300 EFMGKSIIVFTRTCAHTQRSTLLARIL---GFSAVPLHGQLTQSQRLGSLNKFKSGKANI 356 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARGLDIP V V N+D+P ++ YIHR+GRT RAG+ GK+ +LV + D++ Sbjct: 357 LIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYL 416 Query: 359 AIEKLI 364 IE ++ Sbjct: 417 RIESVL 422 >gi|50123133|ref|YP_052300.1| ATP-dependent RNA helicase RhlB [Pectobacterium atrosepticum SCRI1043] gi|56749479|sp|Q6CZD9|RHLB_ERWCT RecName: Full=ATP-dependent RNA helicase rhlB gi|49613659|emb|CAG77110.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 430 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 153/419 (36%), Positives = 230/419 (54%), Gaps = 28/419 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + PR LI+ PTRELA Q+ + E L + L GG ++ Q K Sbjct: 71 LLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P T Sbjct: 131 LENGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPATS 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL F +G+ Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGS 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG+ G + +L +E Sbjct: 307 IDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV-------DWLNGDLSS----LNPPLEKIDIAQHNHARKNNPIPQKS 403 ++ AIE I + D L DL + PP +N R++N P++S Sbjct: 367 NLPAIETYIGHGIPLSKYNSDALMNDLPAPKRLTRPP------RSNNGPRRHNSAPRRS 419 >gi|313837601|gb|EFS75315.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2] gi|314972540|gb|EFT16637.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3] Length = 536 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 149/410 (36%), Positives = 225/410 (54%), Gaps = 20/410 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 35 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 94 Query: 63 L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QV+ N V + GG+ +E Q Sbjct: 95 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSQNISTAASVRGARVLTVYGGVGYEPQ 154 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ P Sbjct: 155 IDALQAGVDVVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGRTP 214 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT+LFSATM + ++ + L P + + A + A K ++ Sbjct: 215 TPRQTMLFSATMPAPIMALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEII 274 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++LQ+ D K IIFC K+ L L +GF AIHG++ Q +R K L F+ G Sbjct: 275 GRILQANDAEKV-IIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGD 333 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV D+ Sbjct: 334 VTILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADVT 393 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 KLI+K LN +LS P+E + H + + IP+ + G Sbjct: 394 RW----KLIDKA---LNLELSE---PVETYSTSPHLYTDLD--IPEDARG 431 >gi|225450277|ref|XP_002267581.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 663 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/359 (38%), Positives = 201/359 (55%), Gaps = 34/359 (9%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+++ L + + YVKPTP+Q IP+ + D+ AQTG+GKTA+F P+++ Sbjct: 219 FSEIDLGDALNLNIRRCKYVKPTPVQRHAIPISIAGRDLMACAQTGSGKTAAFCFPIISG 278 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + KG+ +R P LIL PTREL+ Q+ D +K+ + V + GG P Q Sbjct: 279 IMKGQYAQRPRGSRTAYPLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQ 338 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + LERG D+L+ TPGR++D R ++ + ++ L +DEADRMLDMGF P I+ I + Sbjct: 339 LRDLERGVDILVATPGRLVDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQMD 398 Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT E+Q+++ +FL N + F+A + K+ Sbjct: 399 MPPRGVRQTMLFSATFPKEIQRLASDFLAN-----------------YIFLAV-GRSDKR 440 Query: 232 CALLQQLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 L+ L ++ +G ++F KK L H L GF +IHG+ Q+ R Sbjct: 441 SHLMDLLHAQRENGTHGKQALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREH 500 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 L FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G A Sbjct: 501 ALRLFKSGATPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLA 559 >gi|237809398|ref|YP_002893838.1| ATP-dependent RNA helicase RhlB [Tolumonas auensis DSM 9187] gi|259585616|sp|C4LB49|RHLB_TOLAT RecName: Full=ATP-dependent RNA helicase rhlB gi|237501659|gb|ACQ94252.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 425 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 223/383 (58%), Gaps = 11/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 FA+LGL P+V+ V G+ TPIQ +TIPL+L ++ G AQTGTGKT +F+ Sbjct: 11 FAELGLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTFNY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT R PR LI+ PTRELA Q+ ++ ++ + L GG ++ Q Sbjct: 71 LLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 L+ G D+LI T GRI+D+ +G + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LQEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEADRMFDLGFIKDIRFLFRRMPPPA 190 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R +LFSAT++ +Q+++ + P+ I++ T + I E F Y K LL Sbjct: 191 QRLNMLFSATLSLRVQELAYEHMNEPQHIQIEPEQMTGQRIKEELF---YPSNEDKMLLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L++ +D + IIF N K ++ L+ G V + G++ Q+ R+KIL +F G Sbjct: 248 LTLME-EDWPEKAIIFANTKHGCEDVHAWLQADGHRVGLLTGDVPQKKRLKILEDFTAGL 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAGR G A + ++ Sbjct: 307 LDVLVATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAGRSGHAISFACEDYAF 366 Query: 356 HIDAIEKLIEKKVDWLNGDLSSL 378 ++ IE+ + D S+L Sbjct: 367 NLPEIEEYTHHPIPVSKYDPSAL 389 >gi|212710051|ref|ZP_03318179.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM 30120] gi|212687258|gb|EEB46786.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM 30120] Length = 468 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 142/372 (38%), Positives = 225/372 (60%), Gaps = 11/372 (2%) Query: 3 FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FADL P + L + G++ TPIQ +P +L DV A+TG+GKTA+F L Sbjct: 15 FADLNALPAEQLSNLNELGFITMTPIQEAALPAILAGKDVRAQAKTGSGKTAAF---GLG 71 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +L++ A+ ++L+L PTRELA QVA+ + + NL + L GG+PF Q L Sbjct: 72 LLQRIDAKNFNTQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSLV 131 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 A +L+ TPGR+LDH ++ + +++++ LV+DEADRMLDMGF I + S P RQT Sbjct: 132 HAAHILVATPGRLLDHLHKETVQLDHLQTLVLDEADRMLDMGFADDIDAVISFTPEDRQT 191 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239 LLFSAT D + +S+ +NP IE+N+ + + + + VA + K LLQ+LL Sbjct: 192 LLFSATWPDSIAAISQRIQKNPLTIEINSVNELPDVEQQFYEVARH----DKIDLLQKLL 247 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S++ + ++FCN KK+ + +L SV +HG+++QR R + L F G+ +++ Sbjct: 248 -SREQPASCVVFCNTKKDCQAVYDALMDSNQSVLVLHGDMEQRDRDQTLVRFANGSSRVL 306 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDI + V NF++ E ++HRIGRT RAG+ G A +L + E+ + + Sbjct: 307 VATDVASRGLDIKALEMVINFELSWDPEVHVHRIGRTARAGKSGLAISLCSPEEAQRANV 366 Query: 360 IEKLIEKKVDWL 371 +E+++ K++WL Sbjct: 367 LEEMLNIKLNWL 378 >gi|134094897|ref|YP_001099972.1| ATP-dependent RNA helicase DbpA [Herminiimonas arsenicoxydans] Length = 506 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 213/379 (56%), Gaps = 10/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L LSP ++ + GY + T IQ +++P++LQ D+ A+TG+GKTA+F + ML Sbjct: 48 FAALALSPPMLSNLDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQK 107 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L ++ L++ PTRELA QV++ + + N+ + L GG P Q LE Sbjct: 108 LNPTWFAIQ---GLVICPTRELADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLEH 164 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH +R + ++ ++ LV+DEADRM+DMGF I I S P RQTL Sbjct: 165 GAHIVVGTPGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQTL 224 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D+++K S FL++P ++V ++ + + Y + A L + + Sbjct: 225 LFSATYPDDIRKASAEFLRDPVEVKVEAQHDDSQIEQRFYEVGYDDRNAAVATLLKHYRP 284 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K + L L QGFS A++G ++QR R +IL F + ++VA Sbjct: 285 VSTLA----FCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVA 340 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI +G V N DV E +IHRIGRTGR G A +L A + K + IE Sbjct: 341 TDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIE 400 Query: 362 KLIEKKVDWLNGDLSSLNP 380 + +K W DL S P Sbjct: 401 EYQQKPAQWF--DLKSAEP 417 >gi|288925364|ref|ZP_06419298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae D17] gi|315606787|ref|ZP_07881796.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae ATCC 33574] gi|288337835|gb|EFC76187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae D17] gi|315251452|gb|EFU31432.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae ATCC 33574] Length = 613 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 226/377 (59%), Gaps = 10/377 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+S + A+ + G+ P P+Q + IP +L ++DV +AQTGTGKTA++ LP Sbjct: 4 FEELGVSEDIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +++K A + + +IL PTREL Q+AD+ + K + L VA + GG Q + L+ Sbjct: 61 VVQKTDATDKTTQAVILSPTRELCLQIADDLNAFSKYIDGLHVAAVYGGADIGPQIRTLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR++D NRG ++ + +V+DEAD ML+MGF I I +P T Sbjct: 121 HGAQIIVATPGRLIDLINRGVAKLDQVNNIVLDEADEMLNMGFSESINAIFETLPDDHNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++++++N+L + K I V + + AE + H + A+ K L++++ Sbjct: 181 LLFSATMSREVERIAKNYLHDHKEIVVGSRNEGAEHVNHIYYLVNAK--DKYLALKRVVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K + L K G++ A+HG++ Q+ R + F+ T+Q +V Sbjct: 239 FYPHI-FAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRRHTVQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV N+ +P+ E+Y HR GRTGRAG+ G + +++ + + I Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTREKFKVRQI 357 Query: 361 EKLIEKKVDWLNGDLSS 377 EK I K ++++G L S Sbjct: 358 EKQIGK--EFVDGTLPS 372 >gi|330014982|ref|ZP_08308018.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3] gi|328532472|gb|EGF59268.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3] Length = 457 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 218/382 (57%), Gaps = 9/382 (2%) Query: 3 FADLGLSPKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F+ L + P A L + GY+ T +Q +P +L DV A+TG+GKTA+F L +L Sbjct: 4 FSTLTVLPAAQLANLNELGYLSMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R + +L+L PTRELA QVA + + N+ + +L GG PF AQ L+ Sbjct: 64 HIDPARFETQ---SLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQ 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH +G + ++ ++ LV+DEADRMLDMGF I + P RQT Sbjct: 121 HAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + +S +NP+ IE++T + IE F K ALLQ+LL Sbjct: 181 LLFSATWPAAIAAISGRVQRNPQTIEIDTVDAL-PAIEQQFFEV--SRHGKIALLQRLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 SQ + ++FCN K++ +C +L G S ++HG+++QR R + L F G+++++V Sbjct: 237 SQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + Sbjct: 297 ATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATIL 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPL 382 +++ ++WL + PL Sbjct: 357 ADMLQLSLNWLPAPTGNTIAPL 378 >gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens] gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens] Length = 424 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/349 (38%), Positives = 211/349 (60%), Gaps = 7/349 (2%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80 + +PT IQ + IP+ L D+ G+A+TG+GKTA+FVLP+L L R+ LIL P Sbjct: 15 WKQPTKIQCEAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDKPQRLF---ALILTP 71 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF-NR 139 TRELA Q+++ E G + + A++IGGI Q+ L + ++I TPGR+ DH N Sbjct: 72 TRELAFQISEQIEALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHIIIGTPGRLADHLANT 131 Query: 140 GKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 + ++ LV+DEADR+L+M F + I S++P R+T LFSATMT +++K+ + Sbjct: 132 KGFSLRPLKYLVMDEADRILNMDFEAEVDKILSVLPKERRTYLFSATMTKKVKKLQRASV 191 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 Q+P +IEV+T +T E ++ ++ A+Y K C L+ L ++ + ++FC N Sbjct: 192 QDPVKIEVSTKYTTVEKLQQTYIFVPAKY-KDCYLVSIL--NELAGNSFMVFCATCINTQ 248 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 + L GF+ +HG + Q R+ L FK ++VA+D+A+RGLDIP V V N Sbjct: 249 RIGLMLRNLGFNAIPLHGQMSQSKRLGALHKFKSKESSILVATDVASRGLDIPHVDIVIN 308 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 FD P+ +++YIHR+GRT RAGR G++ V + D++ IE+LI KK+ Sbjct: 309 FDAPSHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQLIAKKL 357 >gi|194224511|ref|XP_001501169.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Equus caballus] Length = 724 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 210/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 236 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 295 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + ++T L +GG+ ++Q L Sbjct: 296 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 355 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 356 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 415 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 416 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 475 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 476 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 535 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 536 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 595 Query: 360 IEK 362 I K Sbjct: 596 IVK 598 >gi|126642301|ref|YP_001085285.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ATCC 17978] Length = 358 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/352 (38%), Positives = 212/352 (60%), Gaps = 12/352 (3%) Query: 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-----EKGRARVRMPRTLILE 79 TPIQ K + L HD G AQTGTGKTA+F++ ++ L ++ R R PR LIL Sbjct: 2 TPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNNPVQEQRFRGE-PRALILA 60 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG-ADVLICTPGRILDHFN 138 PTRELA Q+ + + K NL + L+GG+ F+ Q K+L+ D+++ TPGR++D Sbjct: 61 PTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMVATPGRLIDFVE 120 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSE 196 + ++ ++ IE LVIDEADR+LDMGFIP ++ I P RQTL+FSAT + ++ ++ Sbjct: 121 QKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSATFSYDVLNLAR 180 Query: 197 NFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256 +L P +E+ T +E Q K LLQ +L+ ++ + +IF N++ Sbjct: 181 QWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQ--DKYRLLQDILR-EEPIDKVMIFANRRD 237 Query: 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316 V L L+K G+ V + G I Q R+K+L FK+G +M+A+D+A RG+ + V H Sbjct: 238 QVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMIATDVAGRGIHVDGVSH 297 Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 V NF +P ++++Y+HRIGRTGRAG G + + ++++D ++ IEK I KK+ Sbjct: 298 VVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYLPEIEKAIGKKL 349 >gi|78357523|ref|YP_388972.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219928|gb|ABB39277.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 530 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 212/367 (57%), Gaps = 9/367 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FA L P ++ AV G+V PTPIQ K +P L D+ G+A TGTGKTA+FVLP+L Sbjct: 56 VSFARFSLHPALIEAVSARGFVNPTPIQEKALPPALAGQDILGLAATGTGKTAAFVLPLL 115 Query: 61 TILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L +G + R L++ PTREL AQ+ + + + L A + GG+ AQ +L Sbjct: 116 HRLLLQGESARGTLRALVVAPTRELVAQIHEEVKTLARFCRLRSATVYGGVGMHAQTVQL 175 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+++ PGR+LDH RG ++++++LV+DEAD M DMGF+ ++ I +Q Sbjct: 176 RTGVDIVLACPGRLLDHVRRGHADLSHVDMLVLDEADMMFDMGFLSDVREILHCTRVRKQ 235 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM L++++E L+ P RIE++T + A T+ H K LL+ +L Sbjct: 236 TMLFSATMPAPLRELAEECLRQPVRIELDT-CAIAPTVRHSLCPVPKHL--KTPLLKYVL 292 Query: 240 Q--SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + ++D++ ++F + L L K G + GN+ Q R L F+ GT + Sbjct: 293 RAFARDSV---LVFVRTRHGARRLWQQLVKSGIEATCLQGNLSQGRRRAALEGFRRGTFR 349 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +MVA+D+AARG+D+ VG+V N+D P E +HR GRTGRA G A T V +ED + Sbjct: 350 VMVATDIAARGIDVSQVGYVINYDFPPSVEACVHRAGRTGRASNSGVALTFVTQEDEPQV 409 Query: 358 DAIEKLI 364 +E+++ Sbjct: 410 RTLERVL 416 >gi|86157651|ref|YP_464436.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774162|gb|ABC80999.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C] Length = 628 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 5/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D+GLS V AV + GY KPTP+Q T + DV ++TGTGKTA+F +P+L Sbjct: 22 FDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFTIPILER 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + GR R P L++ PTRELA QVA+ K+ +L V + GG Q KL+ G Sbjct: 82 IPDGR---RKPSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAG 138 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A++++ TPGRI DH R L + + + +DEAD ML+MGF + I +P Q LL Sbjct: 139 AEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLL 198 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++++ ++L +P+ I ++ E I + T Y K LL + Sbjct: 199 FSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPRNLLYMI--GM 256 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFCN + + + L + G+ ++G++ Q+ R ++++ K G ++ MVA+ Sbjct: 257 EEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVAT 316 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI D+ HV N+ +P ++HR+GRTGR G+ G + +LV+ D+ + A++K Sbjct: 317 DIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTALQK 376 Query: 363 LIE 365 E Sbjct: 377 KYE 379 >gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913] gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913] Length = 408 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 203/370 (54%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++ L K++ A+ GY PT IQ + IP LQ D+ A TGTGKTA+F++P + Sbjct: 1 MQFSEFDLDDKLLNAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +++ R R LI+ PTRELA Q+ + E K L + ++ GGI + + Sbjct: 61 QYLMDFPRRDPGFARVLIMTPTRELAYQIHEQCELLAKQTQLKIGVVTGGINYGTHKEIF 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E D+LI TPGR++++ N+E+L++DEADRMLDMGF + I RQ Sbjct: 121 ENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEAKNRRQ 180 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT+ D ++ +E L +P +E + I H +V Y K LL Sbjct: 181 CFLFSATLEGDSVELFAERILNDPALLEAESSRKEKAKI-HQWVHLADDYRHKLELLVNT 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L D K I+F ++ + L L G + G + Q RMK + NF G ++ Sbjct: 240 LNGPDVSK-AIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ D+ HV NFD+P A+ Y+HRIGRTGRAG+ G A +L+ DI + Sbjct: 299 LVATDVAARGIDVADISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLIEAHDIGILY 358 Query: 359 AIEKLIEKKV 368 +E+ IE+K+ Sbjct: 359 KVERYIEQKL 368 >gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis] Length = 546 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/345 (41%), Positives = 202/345 (58%), Gaps = 17/345 (4%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK------GRARVRMP 73 GY +PTP+Q IP++L D+ AQTG+GKTA+F+LP +T L K +A + P Sbjct: 112 GYKRPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLLPAITKLIKEQVPGGSQAETQSP 171 Query: 74 RTLILEPTRELAAQVADNFEKY--GKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131 + LI+ PTREL Q+ + K+ G Y VA GG Q K+LE G ++L+ TPG Sbjct: 172 QVLIISPTRELTLQIYNEARKFTHGTMYRPVVAY--GGTAVGYQLKQLEGGCNILVGTPG 229 Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS--LVPFT--RQTLLFSATM 187 R+LD NRG++ ++ I +L++DEADRMLDMGF P I+ I S +P T RQTL+FSAT Sbjct: 230 RLLDFLNRGQVQLDQISVLILDEADRMLDMGFEPEIRKIVSNYSMPETGKRQTLMFSATF 289 Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247 +E+Q+++ FL N + V I + ++ K+ L + L S + Sbjct: 290 PEEIQRIANEFLSNYLFLTVGRVGGATSDITQRIIEV-DEFGKREKLSEIL--SATGVDR 346 Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307 ++F K+N L L ++ F +IHG+ QR R + L +F+ G ++VA+ +AAR Sbjct: 347 TLVFVETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRDFRSGLAPVLVATSVAAR 406 Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GLDIPDV HV N+D+PN E Y+HRIGRTGR G G A KE Sbjct: 407 GLDIPDVKHVVNYDLPNNIEEYVHRIGRTGRIGNQGLATAFFHKE 451 >gi|224539911|ref|ZP_03680450.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus DSM 14838] gi|224518465|gb|EEF87570.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus DSM 14838] Length = 435 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 219/371 (59%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ +V+ A+ + + TPIQ K+IP++L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MKFSELQLNDQVLDALEAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +++ PTRELA Q+ E + ++ + GG I FE Q K Sbjct: 61 NKLSEGGHPEDAINCIVMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFFDDIMQIVKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ L NP +++ + ++ +V Q K +++ Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPAEVKLAVSRPADKIVQAAYVCYENQ---KLGIIRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q T + IIF + K V + +L+ +V +H +++Q R +++ FK G I Sbjct: 238 LFAEQ-TPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V +++ + Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQSNF 356 Query: 358 DAIEKLIEKKV 368 IE +E+ + Sbjct: 357 KQIENFLERDI 367 >gi|74152734|dbj|BAE42635.1| unnamed protein product [Mus musculus] Length = 929 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 211/357 (59%), Gaps = 11/357 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + ++ SK L + Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR 490 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ + + ++F +K N L +L+++G ++ +HG++DQ K++S+FK+ I Sbjct: 491 RLVEFTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSEGNKVISDFKKKDI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606 >gi|289664841|ref|ZP_06486422.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 493 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 224/375 (59%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L P ++ + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 9 LTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVTVV 68 Query: 61 TILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q Sbjct: 69 NRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 129 ELLLQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 TRQTLLFSAT++ + +++ + P+++ V T + TA + + +K Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY--FPSDEEKQT 246 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + + ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++ Sbjct: 247 LLLGLLSRSEGART-MVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQK 305 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 366 AMSLPDIEAYIEQKI 380 >gi|283832995|ref|ZP_06352736.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220] gi|291071607|gb|EFE09716.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220] Length = 457 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 215/365 (58%), Gaps = 8/365 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY++ TP+Q +P +L DV A+TG+GKTA+F L +L ++ A + ++L+L Sbjct: 22 GYLEMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQHID---AALFQMQSLVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 +G + ++ + LV+DEADRMLDMGF I + P +RQTLLFSAT + + +S Sbjct: 139 KGTVSLDALNTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 Q+P IE++T + IE F T + K LLQ+LL SQ + ++FCN KK+ Sbjct: 199 QQDPLTIEIDTVDAL-PAIEQQFFETSSH--GKIPLLQKLL-SQYQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S ++HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 NF++ E +IHRIGRT RAG G A + A E+ + + + ++++ K++WL + Sbjct: 315 NFELAWDPEVHIHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWLPAPGNGS 374 Query: 379 NPPLE 383 PLE Sbjct: 375 ILPLE 379 >gi|261343045|ref|ZP_05970903.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC 35316] gi|288314609|gb|EFC53547.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC 35316] Length = 421 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 150/390 (38%), Positives = 219/390 (56%), Gaps = 15/390 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALETKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV--DWLNGD--LSSLNPP 381 ++ AIE I + N D LS L PP Sbjct: 367 NLPAIETYIGHSIPQSKYNPDALLSELPPP 396 >gi|240950103|ref|ZP_04754398.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305] gi|240295404|gb|EER46173.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305] Length = 445 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 212/368 (57%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L LSP+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 8 LTFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ E+ + NL++A + GG+ ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL +E L +P +IE + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWYYHA-DNLDHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + M+ I+F +++ V L +L K+G + G++ Q R + ++ KE + + Sbjct: 247 INDFE-MEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQRNQAINRLKENVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +V++D+AARG+DI DV V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 366 KIKRYTEE 373 >gi|146313637|ref|YP_001178711.1| ATP-dependent RNA helicase RhlB [Enterobacter sp. 638] gi|189040028|sp|A4WG30|RHLB_ENT38 RecName: Full=ATP-dependent RNA helicase rhlB gi|145320513|gb|ABP62660.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638] Length = 421 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 221/390 (56%), Gaps = 15/390 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L KV+ A+ + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHAKVIEALENKGFHYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSAFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSNPAMADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P T Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTP 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL +F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV--DWLNGD--LSSLNPP 381 ++ AIE I V N D LS L PP Sbjct: 367 NLTAIETYIGHSVPQSKYNPDALLSELPPP 396 >gi|323700588|ref|ZP_08112500.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132] gi|323460520|gb|EGB16385.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans ND132] Length = 551 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/398 (35%), Positives = 219/398 (55%), Gaps = 24/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPMLT 61 F +LGLS + A+ G+ PTPIQ TIP +L D+ G AQTGTGKTA+F LP++ Sbjct: 4 FQELGLSGSTLDALTSKGFTAPTPIQALTIPRLLSGTRDIVGQAQTGTGKTAAFGLPVIE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 E+G RV+ +LIL PTRELA QVA+ + + V + GG Q K L + Sbjct: 64 AAEEGARRVQ---SLILAPTRELAIQVAEEIDSLKGGKRIRVLPVYGGQAIHMQLKALRQ 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGRI+DH RG L ++ + ++DEAD M +MGF+ ++ I + R+TL Sbjct: 121 GVDVVVGTPGRIMDHLERGSLRIDQLTYFILDEADEMCNMGFVDDVRAILASANADRRTL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQLL 239 +FSATM E+ ++ F+ + + V S A F +A ++ C ++ Sbjct: 181 MFSATMGGEVMAIAREFMGDFDVVRVKPEVSDAPLTRQVFHEIADSDRFEALCRVI---- 236 Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 D + G++F + + + L ++G+ IHG+++Q R KILS F+E Sbjct: 237 ---DARPDFYGLVFVRTRADADLVAARLTQRGYPAEPIHGDLNQAQREKILSGFRERKAT 293 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+D+PD+ HV NF +P + ++HR GRTGRAG+ G A TL+ + + + Sbjct: 294 ILVATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKQGVAITLITPNEFRKL 353 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 I K + + PL +I+ H+ RK Sbjct: 354 MYIAK---------STGIDIAKEPLPRIEDVIHSKKRK 382 >gi|304382917|ref|ZP_07365399.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973] gi|304335942|gb|EFM02190.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973] Length = 420 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/353 (39%), Positives = 213/353 (60%), Gaps = 12/353 (3%) Query: 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84 TPIQ K IP +L HD+ G+AQTGTGKTA+++LP+L+ L G +I+ PTREL Sbjct: 25 TPIQEKCIPEILNGHDIMGVAQTGTGKTAAYLLPILSRLADGGFPDETINCVIMSPTREL 84 Query: 85 AAQVADNFEKYGKNYNL----TVALLIG--GIPFEAQNKKLERGADVLICTPGRILDHFN 138 A Q+ + +G Y L +VA+ G G ++ + K L GADV+I TPGR++ H + Sbjct: 85 AQQIDQAMQGFG--YYLQDVSSVAVYGGNDGNRYDQEVKSLRLGADVVIATPGRLISHLS 142 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 GK+ + + V+DEADRMLDMGF I I +P T Q ++FSATM ++++++ Sbjct: 143 LGKVDFSRVSFFVLDEADRMLDMGFSDDILTIFKQLPKTCQIIMFSATMPSKIEELAATM 202 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 L+NP +++ S AE I+ Y +K +++ + ++ + + IIF +K V Sbjct: 203 LKNPVEVKIAV-SKPAEKIKQTAYVCYE--PQKLGIIKHIFKAGNLTRT-IIFSGKKNKV 258 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 ++ +L++ +H ++ Q R +I+ FK G I ++VA+D+ ARG+DI D+ V Sbjct: 259 KDINRALQRLHIKSGEMHSDLTQAERDEIMYRFKSGAIDVLVATDIVARGIDIDDIYTVI 318 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371 N+DVP AE+Y+HRIGRT RA R G A T V+ DI + +IEK +EK+V+ L Sbjct: 319 NYDVPRDAEDYVHRIGRTARAERDGNAITFVSDADISYFQSIEKFLEKEVEKL 371 >gi|292670294|ref|ZP_06603720.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541] gi|292648025|gb|EFF65997.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541] Length = 425 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 215/370 (58%), Gaps = 10/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F LG+S + + G +PTP+Q + IP + DV AQTGTGKT SF+LP+L Sbjct: 2 MKFDALGVSEVLTALLQRQGITEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLSFLLPLL 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK + + + + L++ PTRELA Q+A E G+ + ++ GG E Q +KL Sbjct: 62 ---EKIKPQGTVAQALVIAPTRELAIQIARVAEPLGEPLGIGTIVIYGGADIERQKEKLR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R ++I TPGR+LDH RG L + ++ +V+DEAD ML MGFI ++++ Q Sbjct: 119 RRPQLVIGTPGRLLDHVRRGTLALGSVNKIVLDEADEMLKMGFIEDVESLLGCAAQDYQL 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 LFSATM + + ++++ F+ NP I + ++T +IE V+ + + CA + Sbjct: 179 ALFSATMPERIVRLTKKFMTNPAHIRIEGETTTLASIEQIALSVSEGEKIDRLCASI--- 235 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ ++FC K+ + L ++G+ V A+ G++ Q R +L F+E +Q+ Sbjct: 236 --NEEAPYLAMVFCATKERTHTVMMELARRGYLVDALSGDLTQTQRAFVLRRFREAKLQI 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 + A+D+AARGLDI V HV+N+D+P +YIHRIGRTGRAG GKA TLVA + + Sbjct: 294 LCATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGAQGKAITLVAAHQHEKLR 353 Query: 359 AIEKLIEKKV 368 +E +++++ Sbjct: 354 KMEAALKERL 363 >gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595] gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 520 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 207/370 (55%), Gaps = 9/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G+S +V A+ G P PIQ T+P+ L+ D+ G A+TGTGKT F +PM+ Sbjct: 39 FADYGVSAPIVDALAAKGISHPFPIQALTLPVALKGSDIIGQAKTGTGKTLGFGIPMIER 98 Query: 63 L----EKG---RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 E G A P+ L + PTRELA QVA + KN ++ + + GG +E Q Sbjct: 99 CIGPSEPGFDALAHPGAPQGLAVVPTRELAKQVAQDLRDAAKNRSIRIVEVYGGRAYEPQ 158 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 K LE+GA++++ TPGR++D L + + +V+DEAD MLD+GF+ ++ I S P Sbjct: 159 IKDLEKGAEIIVGTPGRLIDLMKHRTLNLGAVRAVVLDEADEMLDLGFLEDVEKILSATP 218 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCAL 234 TR T+LFSATM + ++ ++ + I + T++ Y ++ K + Sbjct: 219 PTRHTMLFSATMPGPVIAMARRYMSHATHIRAQAHDDESTTVQSVRQVVYRAHALNKIEV 278 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L ++LQ++ IIF K+ + L +GF+ A+HG++ Q +R + L F+ G Sbjct: 279 LARILQARGRGLT-IIFTRTKRTAARVAEDLAARGFATGALHGDLGQGAREQALRAFRHG 337 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+AARG+D+ +V HV N+ P + Y+HRIGRTGRAG G A T V ED Sbjct: 338 KIDVLVATDVAARGIDVDNVTHVINYQAPEDEKTYVHRIGRTGRAGHSGTAITFVDWEDT 397 Query: 355 KHIDAIEKLI 364 I KL+ Sbjct: 398 PKWAVINKLL 407 >gi|289825492|ref|ZP_06544699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 415 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 212/366 (57%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD+ + K+ +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E L++DEADRMLDMGF I++I + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ D ++ +E L++P + N PS+ H + + K ALL+ LL+ Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADNFEHKVALLKHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F +++ V L +L G + C + G + Q R + + +G + ++V Sbjct: 245 -QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DIPDV HV NFD+P + Y+HRIGRTGRAGR G A +LV D + I Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKI 363 Query: 361 EKLIEK 366 + IE+ Sbjct: 364 GRYIEE 369 >gi|295095196|emb|CBK84286.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 422 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 153/410 (37%), Positives = 225/410 (54%), Gaps = 15/410 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALETKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV--DWLNGD--LSSLNPPLEKIDIAQHNHARKNNPIPQ 401 ++ AIE I + N D LS L PP N R++ P+ Sbjct: 367 NLPAIETYIGHSIPQSKYNPDALLSELPPPKRLTRPRSGNGPRRSGGAPR 416 >gi|296273501|ref|YP_003656132.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097675|gb|ADG93625.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM 7299] Length = 412 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 216/368 (58%), Gaps = 12/368 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L LS ++ ++ + Y+KPT IQ K IPLVL+ D+ AQTG+GKTASFVLP+L Sbjct: 1 MSFFKLKLSDQINKSLTENRYIKPTEIQEKVIPLVLEHKDIIAKAQTGSGKTASFVLPIL 60 Query: 61 TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFEA 114 + K G+ ++R L+L PTRELA QVA F + K N V +IGG Sbjct: 61 NLWYKQNYEGKPKIR---CLVLTPTRELALQVATAFLTFSKYMNKKPKVVSVIGGESIGE 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q +++G DV++ T GR+LD + ++ ++N++ V+DEAD+MLD GF ++ + ++ Sbjct: 118 QLLNIQKGCDVIVATTGRLLDILKKKQMDLSNLDFFVLDEADKMLDFGFEEELELLLEVL 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT ++ ++ +NP I + +T ++I + + + AL Sbjct: 178 PKKRQNLLFSATYPTKMLNIASKITENPIEISIENEEATVQSINQRVIEVNKE--NRSAL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L+ L++ ++ + ++F K++ NL K GF + HG++ Q R + L FK Sbjct: 236 LRHLIK-EENWQQVLVFMANKRSCDNLAFKFRKYGFEAESFHGDLIQEERNETLEGFKAK 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I+++ A+D+AARGL I ++ V N+D+P +YIHRIGRTGRAG+ G A + ++ ED Sbjct: 295 KIKVLFATDIAARGLHIENISCVVNYDLPRATADYIHRIGRTGRAGKSGIAVSFISHEDK 354 Query: 355 KHIDAIEK 362 +H IEK Sbjct: 355 EHFALIEK 362 >gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC 18224] gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC 18224] Length = 474 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 218/371 (58%), Gaps = 14/371 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL P++ A GY PT IQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 47 FKDLGLIPQLCEACETLGYKAPTAIQAESIPLALQNRDLIGLAETGSGKTAAFALPIL-- 104 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P+ L+L PTRELA Q+++ FE G ++ +L+GG+ Q + Sbjct: 105 ----QALMDKPQPFFGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAI 160 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + +++ LV+DEADR+LDM F P I I ++P R Sbjct: 161 GKRPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRER 220 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQ 237 +T LFSATM+ +++ + L NP R+ V++ T T+ ++ + + K L Sbjct: 221 RTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQYYM--FIPHKHKDVHLIW 278 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ + IIF L GFS A+HG + Q SR+ +S F+ T Sbjct: 279 LL-NEHIGQTTIIFTRTIHETNRLALLTRFLGFSAIALHGQLSQSSRLASISKFRSKTRS 337 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARGLDIP V V N+D+ ++ ++HRIGRT RAG+ GKA +LV + D++ Sbjct: 338 ILIATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVW 397 Query: 358 DAIEKLIEKKV 368 IEK ++KK+ Sbjct: 398 LRIEKALDKKL 408 >gi|153005404|ref|YP_001379729.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028977|gb|ABS26745.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. Fw109-5] Length = 680 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 210/360 (58%), Gaps = 5/360 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGLS V A+ + GY +PTP+Q+ T V DV ++TGTGKTA+F +P+L Sbjct: 22 FDELGLSEPVRRAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPILER 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + GR R P L++ PTRELA QVA F K+ +L+V + GG Q +KLE G Sbjct: 82 IADGR---RRPSALVMCPTRELAIQVAQEFTALAKHRDLSVVAVYGGASMGEQLQKLEAG 138 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A++++ TPGRI DH R L ++ + +DEAD ML+MGF + I +P Q LL Sbjct: 139 AEIIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQLL 198 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++++ ++L +P+ I ++ + E I + Y K LL + Sbjct: 199 FSATVPADIEQIIRDYLTDPETILLSGDEYSVENIHNVMYPAVDAYPKPRNLLYMI--EM 256 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+FCN + + + L + G+ ++G++ Q+ R ++++ K G ++ MVA+ Sbjct: 257 EEPETAIVFCNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVAT 316 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI D+ HV N+ +P ++HR+GRTGR G+ G + ++V+ +I + A++K Sbjct: 317 DIAARGIDISDLTHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSIVSGAEIHTLTALQK 376 >gi|170727839|ref|YP_001761865.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813186|gb|ACA87770.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 428 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 217/369 (58%), Gaps = 6/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LSP ++ AV GY + T +Q K IP+ + D+ A+TGTGKTA+F LP+L Sbjct: 1 MKFSAFDLSPLILDAVEVCGYQQLTQVQSKVIPVAVTGCDLMACAETGTGKTAAFALPLL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ R + R LIL PTRELA QVADN +Y + +L + GG Q K L Sbjct: 61 QKLLDEFLDRSAL-RGLILTPTRELAIQVADNISRYSQFTSLKTLAVYGGANMNPQRKAL 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+L+ TPGR+ D + L ++++ LVIDEADRMLDMGF+ I+ + LV Sbjct: 120 NAGVDILVATPGRLFDFIGQHGLDLSSVTSLVIDEADRMLDMGFVRDIERVKGLVARQHV 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T FSAT +D+++ +++ L +P I V T S + + ++ +K LL +L+ Sbjct: 180 THFFSATYSDDVKCLAQKMLCDPTWINVATSKSASSVEQEVYL---VDKRRKAELLSELV 236 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F + K++ ++ L+ G HG+ Q +R + L FK G ++++ Sbjct: 237 -GRNNWQQVLVFASSKESAEHIQKELKLDGLKSAVFHGDKTQGARNRALEEFKSGALRVL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI + V N ++P A++YIHRIGRTGRAG G A + V D K ++ Sbjct: 296 VATDVAARGLDIHALPLVVNIELPFDAQDYIHRIGRTGRAGLTGHAISFVCPSDEKMLEE 355 Query: 360 IEKLIEKKV 368 IE LIE+K+ Sbjct: 356 IEALIERKL 364 >gi|302318882|ref|NP_001032894.2| ATP-dependent RNA helicase DDX42 [Danio rerio] Length = 908 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 139/391 (35%), Positives = 217/391 (55%), Gaps = 14/391 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G +++ + + Y +PTPIQ + +P+ L D GIA+TG+GKTA+F+ P+L Sbjct: 257 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVH 316 Query: 63 ------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK Y L + GG Q Sbjct: 317 IMDQKELEPGEG----PIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQA 372 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 373 KALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRP 432 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E I V K L Sbjct: 433 DRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQ-IVEVLQSGQDKWGWLT 491 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L + + ++F +K N L +L ++G+S+ +HG++DQ R K++++FK+ + Sbjct: 492 RRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNL 551 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 552 PVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSF 611 Query: 357 IDAIEKLIEKKVDWLNGDLSSL---NPPLEK 384 + + +E ++ DL L NP K Sbjct: 612 AGDLVRNLEGANQSVSKDLLDLAMQNPWFRK 642 >gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Hydra magnipapillata] Length = 790 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 202/359 (56%), Gaps = 11/359 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F G ++ + + Y KPTPIQ + +P+ L D+ GIA+TG+GKTA+FV PML Sbjct: 276 ISFGHFGFDDHLMGVIRSSNYSKPTPIQSQAVPVALSGRDIIGIARTGSGKTAAFVWPML 335 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 +L++G P LI PTREL Q+ +++GK YNL V GG Sbjct: 336 VHIMAQPVLKEGDG----PIALICAPTRELCQQINSECKRFGKCYNLRVIACYGGGSKWE 391 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q K L++GA++++CTPGR++D + + LV DEADRM DMGF P +++I + V Sbjct: 392 QTKGLQQGAEIVVCTPGRLIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNV 451 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ LLFSATM +++ + + L +P RI V E I + K L Sbjct: 452 RPDRQCLLFSATMKKKVEWLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWNWL 511 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L +++ + + +IF +K N + +L++QG+ + IHG+ DQ R +L FK+ Sbjct: 512 LSHIVEFT-SGGSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQK 570 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 ++VA+D+AARGLDIP + V N+DV + HRIGRTGRAG G A+TL+ +D Sbjct: 571 QFLILVATDVAARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGIAYTLITPQD 629 >gi|126290158|ref|XP_001370541.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Monodelphis domestica] Length = 1175 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 149/446 (33%), Positives = 247/446 (55%), Gaps = 23/446 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 518 WVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 577 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 578 IMDQRALEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 633 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 634 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 693 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 V RQT++FSAT ++ ++ L P ++V S +E + + +K Sbjct: 694 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEE-NKFLK 752 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL+ L Q++ + IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 753 LLELLGHYQES-GSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKN 811 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 812 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQ 871 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNY 413 ++ I K +E L+G +++ LEK+ + + I +KS+GF + + Sbjct: 872 ARYAGDIIKALE-----LSG--TAVPHDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF 924 Query: 414 SSQKSHIPLKESEKISKLQQDIQEND 439 + + E +K+ K +Q++D Sbjct: 925 DETEQAL-ANERKKLQKAALGLQDSD 949 >gi|124491306|gb|ABN12944.1| Lia2p [Tetrahymena thermophila] Length = 522 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 149/396 (37%), Positives = 227/396 (57%), Gaps = 26/396 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + D ++ V A + KP+PIQ P+VL HD+ GIA+TG+GKT SF+LP + Sbjct: 25 LSWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSI 84 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 ++KG P L+L PTRELA Q+ E++GK+ L A + GG + Sbjct: 85 VHINAQPTVKKGDG----PIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYS 140 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L++G DV+I TPGR++D + + LV+DEADRMLDMGF I+ I + Sbjct: 141 QRALLQQGVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQI 200 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQN-PKRIEVNTPS-STAETIEHCFVATYAQYSKKC 232 RQTL+FSAT +Q +++++ +N P +++ + E I+ T Q K Sbjct: 201 RPDRQTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVT-DQSKKIN 259 Query: 233 ALLQQL--LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 L++QL L +D + +IF KK ++ L K+GF AIHG+ Q+ R +++ Sbjct: 260 QLIKQLDCLTQKDKV---LIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNK 316 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK G ++++A+D+A+RGLD+ DV HVFN+D P E+Y+H IGRTGRAG +G A + + Sbjct: 317 FKSGECRILIATDVASRGLDVKDVSHVFNYDFPKVMEDYVHSIGRTGRAGAYGCAVSFLT 376 Query: 351 KEDIKHI--DAIEKLIEKK----VDWLNGDLSSLNP 380 ED K I + ++ L + K +D L DL+S+NP Sbjct: 377 FEDDKKISREYVQMLHDAKQEIPIDLL--DLASINP 410 >gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892] gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892] Length = 474 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 219/369 (59%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 51 FKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK + L+L PTRELA Q+++ FE G ++ A+++GG+ +Q+ L + Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + N++ LV+DEADR+LD+ F P + I ++P R+T Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT++ +++ + L NP R+ +++ T T+ ++ +Y K L+ L Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDIYLVHIL- 284 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + IIF L L GF +HG + Q +R+ L F+ G+ ++ Sbjct: 285 -NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDIL 343 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP V V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++ Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQR 403 Query: 360 IEKLIEKKV 368 IE + K++ Sbjct: 404 IEAALGKQL 412 >gi|309362056|emb|CAP28713.2| hypothetical protein CBG_09074 [Caenorhabditis briggsae AF16] Length = 747 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 149/426 (34%), Positives = 227/426 (53%), Gaps = 49/426 (11%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 ++ + G +V AV + GY++PTPIQ + IP+ LQ DV G+A+TG+GKTA+F+LP+L Sbjct: 319 NWEESGFPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 378 Query: 62 IL------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + E+ + P +IL PTRELA Q+ + K+GK + +IGG E Q Sbjct: 379 WITSLPKIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQ 438 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 KL G +V+I TPGR++D LL+N +++DEADRMLDMGF P +Q I +P Sbjct: 439 GMKLRMGVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLP 498 Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTP 210 + RQT++F+ATM+ +++++ +L+ P + + Sbjct: 499 ASNMKKDTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNA 558 Query: 211 SSTAETIEH-CFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG 269 E +E ++ T + KK LL+ + SQ I+F N+K +L L K G Sbjct: 559 GKPTERVEQVVYMITKDRKPKK--LLEVI--SQHDKYPIIVFVNRKHGADSLAKGLAKVG 614 Query: 270 FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY 329 +HG Q +R L K+ +++VA+D+A RG+DI DV V N+D+ E+Y Sbjct: 615 KKTSVLHGGKGQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDY 674 Query: 330 IHRIGRTGRAGRHGKAFTLVAKEDIK-HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 HRIGRTGRAG+HGKA T + +D + D + L+E + S PP ++A Sbjct: 675 THRIGRTGRAGKHGKAITFLTADDTAVYYDLKQCLLESPI--------SSCPP----ELA 722 Query: 389 QHNHAR 394 H AR Sbjct: 723 NHEAAR 728 >gi|296105329|ref|YP_003615475.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059788|gb|ADF64526.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 421 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 150/390 (38%), Positives = 220/390 (56%), Gaps = 15/390 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLTQATGLKIGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV--DWLNGD--LSSLNPP 381 ++ AIE I + N D LS L PP Sbjct: 367 NLPAIEAYIGHSIPQSKYNPDALLSELPPP 396 >gi|154497003|ref|ZP_02035699.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC 29799] gi|150273402|gb|EDN00530.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC 29799] Length = 400 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/350 (39%), Positives = 203/350 (58%), Gaps = 6/350 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 +++ADLGLS +V+ A+ GYV+ TP+Q IP ++ DV A TGTGKT +F +PM+ Sbjct: 12 VNYADLGLSAEVMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGTGKTFAFGIPMV 71 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKL 119 ++ V+ L+L PTRELA Q+ D + + L GG P E Q L Sbjct: 72 EHIDPESDAVQ---ALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTL 128 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++ +++ TPGR++DH R + ++ +E +V+DEADRMLDMGFI + I + + Sbjct: 129 KKHPQIVVATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKN 188 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT++ E+ +S + ++P I V I+ + + K ++ L Sbjct: 189 LGLFSATISREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALL- 247 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + I FCN K L L+ +G + AIHG+I QR R K L F+EG ++++ Sbjct: 248 -THGGYERAIAFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVL 306 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 VA+D+AARGLDI DV VFN+DVP+ E YIHRIGRTGRA RHG A++LV Sbjct: 307 VATDVAARGLDIDDVDVVFNYDVPDEIEYYIHRIGRTGRAKRHGVAYSLV 356 >gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta] gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta] Length = 524 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 69 LTWKDLGLNETLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 128 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 129 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 185 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 186 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 245 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T E ++ ++ +Y K L +L Sbjct: 246 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 303 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 304 -NELSGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 362 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA TLV++ DI+ Sbjct: 363 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 422 Query: 360 IEKLIEKKV 368 IE L+ K++ Sbjct: 423 IEHLLGKQL 431 >gi|330501428|ref|YP_004378297.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01] gi|328915714|gb|AEB56545.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01] Length = 458 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 210/369 (56%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L LS + + GY + TPIQ ++PL+L+ D+ A+TG+GKTA+F + +L Sbjct: 6 FASLPLSAAMQANLAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHP 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + L+L PTRELA QVA + + N+ V L GG+PF Q LE Sbjct: 66 LNP---RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGR+ +H +G L ++ + LV+DEADRMLDMGF+ I I P RQTL Sbjct: 123 GAHVIVGTPGRVQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT +++++ FL+ P+R+EV + + + Q + ++L + + Sbjct: 183 LFSATYPAGIEQLAARFLRTPERVEVEAMHDDDQIEQRFYEIAPGQRMQAVSILLRHFRK 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + FC ++ L LE + S A+HG+++QR R +IL+ F ++ ++VA Sbjct: 243 QPV----VAFCATRQQCDELAAQLEAEKISAAALHGDLEQRERDQILALFANRSLSVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N ++ AE +IHRIGR+GRAG G A +LVA + AIE Sbjct: 299 TDVAARGLDIAGLEMVINVELSRDAEVHIHRIGRSGRAGDKGLALSLVAPPEASRAQAIE 358 Query: 362 KLIEKKVDW 370 L K + W Sbjct: 359 TLQGKTLAW 367 >gi|330470231|ref|YP_004407974.1| dead/deah box helicase domain-containing protein [Verrucosispora maris AB-18-032] gi|328813202|gb|AEB47374.1| dead/deah box helicase domain protein [Verrucosispora maris AB-18-032] Length = 563 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 209/364 (57%), Gaps = 3/364 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+LG + V A+ AG + IQ +P+ L+ D+ G A TGTGKT F +P+L Sbjct: 27 FAELGARAETVEALAAAGITRAFAIQEYALPIALRGADLIGQAPTGTGKTLGFGVPLLER 86 Query: 62 ILEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + G +P+ L++ PTREL QVA + G+ + V + GG+ +E Q + L Sbjct: 87 VFAPGEGSGDGLPQALVVVPTRELGIQVAKDIAAAGRTRGVRVLPIYGGVAYEPQVEALR 146 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G ++L+ TPGR+LD + L +N I LV+DEADRMLD+GF+ ++ I +++P RQT Sbjct: 147 KGVEILVGTPGRLLDLAKQKHLRLNGIRALVLDEADRMLDLGFLDDVERILAMLPEDRQT 206 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM D + +S FL++P I + T + + + K ++ ++LQ Sbjct: 207 MLFSATMPDPIVTLSRRFLRHPITIHAGHTAETGPSPQTEQLVYRTHSMNKVEIVARILQ 266 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ +IF K+ + L+ +GF+V A+HG++ Q +R + L F+ G I +V Sbjct: 267 AESRGLT-MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLV 325 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ V HV N+D P + Y HRIGRTGRAG G A T V +D+ I Sbjct: 326 ATDVAARGIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRII 385 Query: 361 EKLI 364 +K + Sbjct: 386 DKTL 389 >gi|296200672|ref|XP_002747679.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Callithrix jacchus] Length = 764 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 139/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 186 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 245 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 246 ERLIYKPRRGPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEVALR 305 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 306 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 365 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 366 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 425 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 426 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQMQRLEALRRFKDEQIDIL 485 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 486 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 545 Query: 360 IEK 362 I K Sbjct: 546 IVK 548 >gi|262165629|ref|ZP_06033366.1| ATP-dependent RNA helicase [Vibrio mimicus VM223] gi|262025345|gb|EEY44013.1| ATP-dependent RNA helicase [Vibrio mimicus VM223] Length = 363 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 136/338 (40%), Positives = 201/338 (59%), Gaps = 8/338 (2%) Query: 36 LQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA-RVRMPRTLILEPTRELAAQVADNFEK 94 +Q D+ AQTGTGKTASFVLP+L L +G+ R + R LIL PTRELA QVA+ E+ Sbjct: 1 MQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQ 60 Query: 95 YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154 YG++ L + GG+ +AQ ++L G DVL+ TPGR++D + + + IE++V+DE Sbjct: 61 YGQDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDE 120 Query: 155 ADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214 ADRMLDMGFI I I +P Q LLFSAT++ +++++++ + +P I + ++ Sbjct: 121 ADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKTAVNDPYEISIAANQASK 180 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 I + K ALL L+ Q +IF K L LEK+G A Sbjct: 181 SNISQWLITV--DKDTKSALLSHLINEQQ-WDQALIFIETKHGAAKLVTQLEKRGIQAEA 237 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 H Q R ++L +FK G I+ +VA+ +AARG+DI + V N+D+P A+ Y+HRIG Sbjct: 238 FHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIG 297 Query: 335 RTGRAGRHGKAFTLVAKEDIKHIDAIEK----LIEKKV 368 RTGRA G+A + V+K++ K++ IE LIE++V Sbjct: 298 RTGRADAVGEAISFVSKDNFKNLCMIESRLGHLIERRV 335 >gi|213023601|ref|ZP_03338048.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 359 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/353 (39%), Positives = 206/353 (58%), Gaps = 4/353 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD+ + K+ +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E L++DEADRMLDMGF I++I + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ D ++ +E L++P + N PS+ H + + K ALL+ LL+ Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADNFEHKVALLKHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 QD I+F +++ V L +L G + C + G + Q R + + +G + ++V Sbjct: 245 -QDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+AARG+DIPDV HV NFD+P + Y+HRIGRTGRAGR G A +LV D Sbjct: 304 ATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHD 356 >gi|148379740|ref|YP_001254281.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC 3502] gi|153931372|ref|YP_001384037.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC 19397] gi|153936334|ref|YP_001387579.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. Hall] gi|148289224|emb|CAL83319.1| ATP-dependent RNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927416|gb|ABS32916.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. ATCC 19397] gi|152932248|gb|ABS37747.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. Hall] Length = 481 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 128/368 (34%), Positives = 220/368 (59%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + LS +++ ++ GY P+ +Q + IPL+L+ D+ ++TG+GKTA+F +P Sbjct: 4 LTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIP-- 61 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I EK + P+ L+L PTRELA Q+ + L + G P Q ++L+ Sbjct: 62 -ICEKLELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR LDH R L + I+ V+DEAD ML+MGFI ++ + +P R T Sbjct: 121 QRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ ++++ + + ++ NP+ I +N + T TI C+ + K LLQ+++ Sbjct: 181 MLFSATIPEKVENLCKKYMNNPENININPENITTGTINQCYYE--VEDKDKFYLLQKII- 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + N IIFCN ++ V + ++K+G + +HG ++Q+ R++ + FKEG Q +V Sbjct: 238 YKEVVDNSIIFCNTREKVDEVLKHMKKKGLNAIGLHGGMEQKDRLETMKKFKEGEFQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ I ++ HV N+++P E+Y+HRIGRTGRAG+ G A T + ++ + I Sbjct: 298 CTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDI 357 Query: 361 EKLIEKKV 368 E IEK++ Sbjct: 358 EDYIEKEI 365 >gi|282860072|ref|ZP_06269153.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia JCVIHMP010] gi|282587160|gb|EFB92384.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia JCVIHMP010] Length = 589 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 253/473 (53%), Gaps = 23/473 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + + TP+Q + IP +L+ D+ +AQTGTGKTA+++LP+L Sbjct: 1 MYFDELDLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG--GIPFEAQN 116 + L G LI+ PTRELA Q+ + + N VA+ G G ++ + Sbjct: 61 SKLADGGYPEDAINCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L GADV+I TPGR + H + G + ++ + V+DEADRMLDMGF I+ I +P Sbjct: 121 KSLALGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPS 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 T QT++FSATM +++ +++ L+ P+ +++ S AE I+ Y ++K +++ Sbjct: 181 TCQTIMFSATMPSKIEDLAKTLLKEPEMVKLAV-SKPAEKIQQSAYVCYE--TQKIEIIK 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + ++ D + IIF K+ V + SL ++ + +H ++DQ R ++ FK G I Sbjct: 238 DIFKAGD-LHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQI 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+ ARG+DI D+ V N+DVP+ E+Y+HRIGRT RA R G A T V +DI + Sbjct: 297 DVLVATDIVARGIDIDDITMVINYDVPHDVEDYVHRIGRTARADRDGVAITFVNGDDIYY 356 Query: 357 IDAIEKLIEKKVD--WLNGDL-------SSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407 IE +EK ++ L L S+ P K + H R K + + Sbjct: 357 FQQIESFLEKTIEKNRLPEALGEGPEYKSNGRPSKNKKAKNRRRHDRDQQSHKDKKSNY- 415 Query: 408 RRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460 RR KN Q + KE K E ++ + +GN+P +GK Sbjct: 416 RRVKNRQEQPAPTDEKEQHKPQ-----TSEKKSEKVQDKGNIPEVGATAEQGK 463 >gi|229495897|ref|ZP_04389623.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas endodontalis ATCC 35406] gi|229317210|gb|EEN83117.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas endodontalis ATCC 35406] Length = 587 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 218/371 (58%), Gaps = 8/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59 M F +L LS ++ AV G+ + P+Q IP +L+ + D+ +AQTGTGKTA++ LP+ Sbjct: 1 MTFDELKLSAPLLDAVSALGFTEAMPVQAAVIPYLLEDNIDLIALAQTGTGKTAAYGLPL 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKK 118 L EK R + P+ L+L PTREL Q+A + E + K + V + GG E Q + Sbjct: 61 L---EKLRPQRDFPQALVLSPTRELCLQIASDLESFAKFLPEVHVLAVYGGSSIETQIRS 117 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RG D+++ TPGR+LD R + + I +V+DEAD ML+MGF ++ I S +P R Sbjct: 118 LKRGVDIVVATPGRLLDLMRRRAISLERIHTVVLDEADEMLNMGFSEDLKAILSEIPEER 177 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LLFSATM+ E+ ++ ++L +PK I + + I H + A+ ++ L+++ Sbjct: 178 NLLLFSATMSREIATIAHSYLHDPKEITIGRKNEANSNIRHIYYLVPAR--QRYLALKRI 235 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ GI+FC + + L G++ A+HG++ Q R +++ F G +QL Sbjct: 236 VDFFPSI-YGIVFCRTRVETKEIAEHLIADGYNADALHGDLSQEQRDRVMQRFCSGHLQL 294 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLD+ ++ HV ++ +P+ ENY HR GRT RAG+ G + L + I Sbjct: 295 LVATDVAARGLDVDNLTHVIHYGLPDDVENYTHRSGRTARAGKTGLSIALCHLREKSRIR 354 Query: 359 AIEKLIEKKVD 369 +IEKLI K++ Sbjct: 355 SIEKLIGAKME 365 >gi|114682563|ref|XP_001166284.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 2 [Pan troglodytes] Length = 745 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 167 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 226 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 227 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 286 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 287 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 346 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 347 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 406 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 407 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 466 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 467 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 526 Query: 360 IEK 362 I K Sbjct: 527 IVK 529 >gi|300727507|ref|ZP_07060898.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella bryantii B14] gi|299775210|gb|EFI71811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella bryantii B14] Length = 622 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/385 (35%), Positives = 228/385 (59%), Gaps = 14/385 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F +LG+S + A+ + G+ P P+Q + IP +L R DV +AQTGTGKTA++ LP Sbjct: 4 FEELGVSKDICRAISELGFEHPMPVQEEVIPYLLSRESDVIALAQTGTGKTAAYGLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 +L+ ++ +T+IL PTREL Q+AD+ ++ K + + + + GG +Q + L+ Sbjct: 61 VLQNTDPSTKITQTVILSPTRELCLQIADDLNEFAKYIDGMHIVAVYGGTDIGSQIRTLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G +++ TPGR++D NRG + N++ +V+DEAD ML+MGF I I + T Sbjct: 121 HGVQIIVATPGRLVDLMNRGVAKLENVQNIVLDEADEMLNMGFSESINTIFEGLSKDHIT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM+ E++++++N+L N K I V + + AE + H + A+ K L++++ Sbjct: 181 LLFSATMSKEVERIAKNYLHNHKEIVVGSRNEGAEHVNHIYYMVSAK--DKYLALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GIIFC K + L K G++ A+HG++ Q+ R + F+ Q +V Sbjct: 239 FHPRI-FGIIFCRTKVETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHLTQFLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ ++ HV N+ +P+ E+Y HR GRTGRAGR G + +++ ++ + I Sbjct: 298 ATDVAARGLDVDELTHVINYGLPDDIESYTHRSGRTGRAGRKGTSISIIHVKEKWKVRQI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKI 385 EK I K +++ G+L P E+I Sbjct: 358 EKQIGK--EFIAGEL----PKAEEI 376 >gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Pongo abelii] Length = 765 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546 Query: 360 IEK 362 I K Sbjct: 547 IVK 549 >gi|300779595|ref|ZP_07089451.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC 33030] gi|300533705|gb|EFK54764.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC 33030] Length = 440 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 131/351 (37%), Positives = 208/351 (59%), Gaps = 4/351 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG++ ++V A+ ++G + IQ T+PL L D+ G A+TG GKT +F +P+L Sbjct: 8 FAELGVAAEIVEALGESGIERVFSIQELTLPLALAGRDLIGQARTGMGKTFAFGVPLLDR 67 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + A + PR L++ PTRELA QV+++ + + + GG P++ Q L Sbjct: 68 VFDDAAIEELDGTPRALVITPTRELAVQVSEDLTLAASKTPVRLTTIYGGRPYDEQLNAL 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E G DV++ TPGR+LD RG L+++ + ILV+DEAD MLD+GF+P IQ + + Q Sbjct: 128 EAGVDVVVGTPGRLLDLHERGDLVLDRVAILVLDEADEMLDLGFLPDIQRLWGALSQPLQ 187 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM + K++ + P I + S+ V + K ++ ++L Sbjct: 188 TMLFSATMPAPILKLAREMMNKPVHIRAESADSSQLHDTTKQVVFVSHKMDKPEVVARVL 247 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q+ D IIF K+ + + ++GF+V ++HG++ Q +R + L F++G ++++ Sbjct: 248 QA-DGRGRTIIFTRTKRTAAEVAEDVARRGFAVGSVHGDLGQSARERSLEAFRKGDVEIL 306 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 VA+D+AARG+D+ DV HV N+ P+ Y+HRIGRTGRAGR G A TLV Sbjct: 307 VATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGRTGTAVTLVG 357 >gi|198435916|ref|XP_002130991.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Ciona intestinalis] Length = 1150 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 147/425 (34%), Positives = 236/425 (55%), Gaps = 11/425 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + G+S K++ A+ A Y KPT IQ + IP ++ HD+ GIA+TG+GKT +F+LPML Sbjct: 492 WVQAGVSYKMLNALKKANYEKPTVIQAQAIPAIMSGHDLIGIAKTGSGKTVAFLLPMLRQ 551 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R P +I+ PTRELA Q+ +K+ K+ L V + GG Q +L+ Sbjct: 552 IMDQRPLEDTEGPIAVIMTPTRELALQITKECKKFTKSLKLHVVCVYGGTGISEQIAELK 611 Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 RGA++++CTPGR++D N G++ + LV+DEADRM DMGF P + ++ + Sbjct: 612 RGAEIIVCTPGRMIDMLTVNNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMHVINSCRPD 671 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 RQT+LFSAT +++ ++ L P ++V S + + + T Q K LL+ Sbjct: 672 RQTVLFSATFPRQMEALARRILNKPVEVQVGGRSVVCSDVKQQVLILTEEQ--KFLKLLE 729 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L Q Q+ K + +F ++++ L L + +S A+HG IDQ R I+S+FK G Sbjct: 730 LLGQYQE--KGAVLVFVDKQERADYLLKELMDKSYSCMALHGGIDQYDRDSIISDFKRGV 787 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 QL++A+ +AARGLD+ ++ V NF+ PN E+Y+HR GRTGRAG G A+T + ++ + Sbjct: 788 NQLLIATSVAARGLDVKNLILVVNFNCPNHYEDYVHRCGRTGRAGNKGFAYTFITQDQAR 847 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 + I K +E + + DL L ++ AQ + N+ + FD + + Sbjct: 848 YAGEIIKALELSLTKVPPDLEMLWNQFKEEQKAQGKSVKSNSGFTGRGFKFDETEYVIAK 907 Query: 416 QKSHI 420 ++ I Sbjct: 908 ERKQI 912 >gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3] gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3] Length = 407 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L ++ A+ + GY +PT IQ + IP L D+ A TGTGKTA+FVLP L Sbjct: 5 FAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA QVAD KN L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+ ++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239 LFSAT+ + ++ + + L P I+ +P + I + A A++ K ALL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEH--KLALLKHII 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F ++ + L LE I G + Q R ++ F+EGT+ ++ Sbjct: 243 TEQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFREGTVNVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A ++V D +D Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360 Query: 360 IEKLIEKKV 368 + + +++ + Sbjct: 361 VARYVKEDI 369 >gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo] Length = 1561 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 215/365 (58%), Gaps = 5/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F+LP+L Sbjct: 983 LSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL 1042 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + ++T L +GG+ + Q L Sbjct: 1043 ERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTSCLAVGGLDVKTQEAALR 1102 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G D+LI TPGR++DH N ++++E+L++DEADRMLD F ++ I L RQ Sbjct: 1103 SGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSKHRQ 1162 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238 T+LFSATMT+E++ ++ L+NP RI VN+ + A + F+ + + A++ L Sbjct: 1163 TMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSAL 1222 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L T + ++ Q K + H L G V +HGN+ Q R++ L FK+ I Sbjct: 1223 LTR--TFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQID 1280 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 1281 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKML 1340 Query: 358 DAIEK 362 I K Sbjct: 1341 KEIVK 1345 >gi|302553973|ref|ZP_07306315.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM 40736] gi|302471591|gb|EFL34684.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM 40736] Length = 475 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 131/346 (37%), Positives = 205/346 (59%), Gaps = 12/346 (3%) Query: 31 TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80 T+P+ L DV G A+TGTGKT F LP+L T+ +E GRA P+ L++ P Sbjct: 2 TLPVALSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAEPEALTEAPQALVVVP 61 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 TREL QV ++ GK N+ V + GG +E Q + L++G DV++ TPGR+LD + Sbjct: 62 TRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQK 121 Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200 KL + +++ LV+DEAD MLD+GF+P ++ I +++P RQT+LFSATM + ++ ++ Sbjct: 122 KLNLKHVKSLVLDEADEMLDLGFLPDVEKIINMLPVRRQTMLFSATMPGAVIGLARRYMS 181 Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 P I +P T+ + Y A K ++ ++LQ++ ++FC K+ Sbjct: 182 QPTHISATSPDDAGATVANTKQYIYRAHNMDKPEMVARILQAEG-RGLAMVFCRTKRTAA 240 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 +L L+++GF+ A+HG++ Q +R + L F+ G + ++V +D+AARG+D+ V HV N Sbjct: 241 DLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVIN 300 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 + P + Y+HRIGRTGRAG G A TLV +DI I K +E Sbjct: 301 YQSPEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKALE 346 >gi|224089124|ref|XP_002308641.1| predicted protein [Populus trichocarpa] gi|222854617|gb|EEE92164.1| predicted protein [Populus trichocarpa] Length = 440 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 214/367 (58%), Gaps = 11/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FADLG+ ++V A G+ PT IQ++ IP L+ D+ +AQTG+GKTA+F LP L Sbjct: 12 FADLGICEQLVEACERLGWKNPTKIQVEAIPHALEGKDLIALAQTGSGKTAAFALPTLQA 71 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ V + +L PTRELA Q+A+ FE G + L A+L+GG+ Q L + Sbjct: 72 LLQASVTSVPVFYACVLSPTRELAIQIAEQFEALGSDIGLRCAVLVGGVDMGLQTIALAK 131 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH + K + ++ L++DEADR+L+ F + I +++ R+T Sbjct: 132 RPHIVVGTPGRLLDHLSNTKGFSLRTLKYLILDEADRLLNEEFEKSLDEILTVISRDRKT 191 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT +++K+ L+NP +IEV + S ET+ + A+Y K+C L+ L Sbjct: 192 YLFSATMTKKVRKLQRACLRNPVKIEVASKYSVVETLRQQLLFCPAKY-KECYLVHAL-- 248 Query: 241 SQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 T+K+G ++F L L G I+G++ Q R+ L+ FK G Sbjct: 249 ---TLKSGASTMVFTRTCDATHFLALVLRNLGLRAIPINGHMSQSKRLGALNKFKAGECN 305 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++ +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G A +LV + +I Sbjct: 306 ILICTDVASRGLDIPSVDMVVNYDIPTNSKDYIHRVGRTARAGRSGLAISLVNQNEIGWF 365 Query: 358 DAIEKLI 364 IE LI Sbjct: 366 KQIENLI 372 >gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae] gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae] Length = 525 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 219/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 71 LTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 130 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + + +++GG+ AQ +L Sbjct: 131 HALLENPQRFF---ALVLTPTRELAFQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLA 187 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + +I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 188 KKPHIIIATPGRLVDHLENMKGFNLKSIKYLVMDEADRILNMDFEVELDKILKVLPRERR 247 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T E ++ ++ +Y K L +L Sbjct: 248 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYLFIPVKY--KDVYLVHIL 305 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 306 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKDRSIL 364 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA TLV++ DI+ Sbjct: 365 ISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 424 Query: 360 IEKLIEKKV 368 IE L+ K++ Sbjct: 425 IEHLLGKQL 433 >gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens] gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct] Length = 765 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546 Query: 360 IEK 362 I K Sbjct: 547 IVK 549 >gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 575 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/389 (36%), Positives = 227/389 (58%), Gaps = 10/389 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F D ++ A AG+ +PT IQ + P+ LQ D+ +A+TG+GKT F+LP+ Sbjct: 138 MEFKDAPFQERIQQAFAQAGFARPTSIQGQAWPIALQNKDMICVAKTGSGKTCGFLLPVF 197 Query: 61 TILEKGRARVR---MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + R++ P L+L PTREL+ Q+ + +K+G+ + GG Q Sbjct: 198 HQHLVKQTRIQGFTKPILLVLAPTRELSVQILEEAQKFGRPLGIRSVCCYGGASKHPQIA 257 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT-SLVPF 176 L+RG + +I TPGR+ D K ++ ++ LV+DEADRMLDMGF P I++I ++ P Sbjct: 258 ALQRGVECVIATPGRLNDLIEMRKADLSKVQYLVLDEADRMLDMGFEPQIRSIILNIPPE 317 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT E+Q ++ +FL+NP +I V ++ + S+K L+ Sbjct: 318 NRQTLLFSATWPKEIQALAHDFLKNPIQINVGEVNALVANKDIQQTIVMCSESEKLDKLE 377 Query: 237 QLLQSQDTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q+L +D M II F +K + +L + L + GF+V ++HG+ Q R +++ FK G Sbjct: 378 QIL--RDLMHGKIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQ 435 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVP---NRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 +++++A+D+AARGLD+ DVG V N+D+P N E+Y+HRIGRTGRAG GKA+T + Sbjct: 436 LRVLIATDVAARGLDVKDVGVVVNYDMPSGVNGVEDYVHRIGRTGRAGNKGKAYTFFTQG 495 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 D K+ + +++ K + +L ++ P Sbjct: 496 DRKNATQLVQVLTKAQQEIPPELQAMARP 524 >gi|82779039|ref|YP_405388.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae Sd197] gi|309784492|ref|ZP_07679130.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617] gi|123561185|sp|Q329V8|RHLB_SHIDS RecName: Full=ATP-dependent RNA helicase rhlB gi|81243187|gb|ABB63897.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197] gi|308927598|gb|EFP73067.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617] Length = 421 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 212/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ M Sbjct: 11 FSDFSLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSMFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNKPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1] gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1] Length = 482 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/398 (34%), Positives = 228/398 (57%), Gaps = 10/398 (2%) Query: 13 VCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TILEKGRAR 69 +CA L+ G P IQ T+ + LQ D+ G A+TG+GKT +F +P++ ++ K R Sbjct: 5 ICAPLERKGITTPFAIQEMTLSVALQGTDLIGQARTGSGKTLAFGIPVVQRSVSPKDRDY 64 Query: 70 VRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 + + P+ LI+ PTRELA QV+ ++ L V + GG +E Q + LE+G D+ Sbjct: 65 IDLPQGKPQALIVAPTRELAMQVSAEISMISEDRGLRVLTVYGGAGYEPQIEALEKGVDI 124 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 ++ TPGR++D NR L ++++ LV+DEAD MLD+GF+P ++ + +L P TRQTLLFSA Sbjct: 125 VVGTPGRLIDLANRKVLDLSHVHALVLDEADEMLDLGFLPDVEKLVTLTPETRQTLLFSA 184 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS-KKCALLQQLLQSQDT 244 TM + ++ +++++P I + ++ ET+ Y + K ++ +LLQ +D Sbjct: 185 TMPGAIVALARSYMRHPMNIRAES-AAERETVPATAQFVYQAHDLDKPEMIGRLLQCEDH 243 Query: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304 K ++F K+ + L ++GF +HG++ Q +R +++ F++G ++++VA+D+ Sbjct: 244 DKV-VVFARTKRQAQRVADDLAERGFPASPLHGDMQQAARERVMQKFRDGKVEVLVATDV 302 Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 AARG+D+ V HV N+ P+ + Y+HRIGRTGRAG G A TLV D+ I K + Sbjct: 303 AARGIDVTGVSHVVNYTTPDDEKTYVHRIGRTGRAGASGVAVTLVDWADLHKWKMINKAL 362 Query: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQK 402 + D SS L + I + R P+K Sbjct: 363 DLPFDDPQETYSSSEHFLHDMGIPKGTKGRIKKATPEK 400 >gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357] gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357] Length = 472 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/394 (36%), Positives = 222/394 (56%), Gaps = 14/394 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL ++ A GY PT IQ + IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 54 FKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQA 113 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + P + L+L PTRELA Q++ FE G ++ +L+GG+ +Q+ L Sbjct: 114 L------MDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIAL 167 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + N++ LV+DEADR+LDM F P + I ++P R Sbjct: 168 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRER 227 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQ 237 +T LFSATM+ +++ + LQNP R+ V++ T T++ ++ + + K L Sbjct: 228 RTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYI--FIPHKHKDLYLVY 285 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ ++ IIFC L L GF +HG + Q +R+ L F+ + Sbjct: 286 LL-NEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRD 344 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V NFD+P ++ +IHRIGRT RAG+ G A + + D++ Sbjct: 345 ILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAW 404 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391 IE + KK+ + + E++ AQ + Sbjct: 405 LRIEGALGKKLPEYPAEKDEVMVLAERVSEAQRS 438 >gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens] Length = 765 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 546 Query: 360 IEK 362 I K Sbjct: 547 IVK 549 >gi|257055065|ref|YP_003132897.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] gi|256584937|gb|ACU96070.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] Length = 449 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 207/366 (56%), Gaps = 8/366 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADL L + A+ AG P PIQ T+P L DV G AQTG+GKT +F L +L Sbjct: 20 ITFADLNLPKALHRALRKAGLHTPFPIQAATLPDALAGRDVLGRAQTGSGKTLAFGLALL 79 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + L+ G+AR R PR L+L PTRELA QVAD K L ++GG+ + Q + L Sbjct: 80 SRLDGGKARPRRPRALVLVPTRELAMQVADALVPLAKAMGLWCRTVVGGMSLQRQAEALL 139 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D++I TPGR+ DH +G ++ IE++ IDEAD+M DMGF+P ++ I P Q Sbjct: 140 RGVDLVIATPGRLSDHVRQGTCTLDGIELVAIDEADQMADMGFLPQVRQILDRTPPDGQR 199 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ D + + +L +P V +++ +T+EH ++ K A++ ++ Sbjct: 200 LLFSATLDDAVADLVSRYLTDPVTHSVAPVTASVDTMEHHLF--QVEHKDKQAVVTEIAA 257 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q I+F K +V L L G A+HG Q R ++L++F+ G + ++V Sbjct: 258 RQG---RTILFVRTKHHVDRLTTRLRAAGVPAAALHGGKTQGQRNRVLADFRSGRMPVLV 314 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+ + +G V + D ++Y+HR GRT RAG G TLV +E + + Sbjct: 315 ATDVAARGIHVDGIGLVLHVDPAADHKDYLHRAGRTARAGASGTVVTLVTREQRR---TV 371 Query: 361 EKLIEK 366 +++E+ Sbjct: 372 RRMLER 377 >gi|114682561|ref|XP_001166253.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 1 [Pan troglodytes] Length = 737 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 159 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 218 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 219 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 278 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 279 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 338 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 339 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 398 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 399 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 458 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 459 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 518 Query: 360 IEK 362 I K Sbjct: 519 IVK 521 >gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon] Length = 392 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 139/355 (39%), Positives = 209/355 (58%), Gaps = 17/355 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ ++ ++ + G+ +PT IQ K+I L+L DV A TG+GKT +F ++ Sbjct: 4 FKELGIIEPILKSIEEEGFERPTEIQEKSISLILSGKDVIAEAATGSGKTLAFAADIIEK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EKG RTL+L PTRELA QVA + K L + + GG+ Q +L R Sbjct: 64 TEKGTG----IRTLVLTPTRELAQQVAAALSLFSKYKPLRIVAVFGGVSINPQITQLRR- 118 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ADV++ TPGRILDH R L ++ + ILV+DEADRMLDMGFIP ++ I P RQTLL Sbjct: 119 ADVVVGTPGRILDHIGRRTLNLSKVNILVLDEADRMLDMGFIPDVKKIVGECPRNRQTLL 178 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY----SKKCALLQQL 238 FSAT++ E+ ++ + ++P S +AE T Y + K +LL L Sbjct: 179 FSATISREITVLARKYQKDP-------ISVSAEAYVDPSKLTQLYYDVPDNLKFSLLVHL 231 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ +++ + ++FCN + N + +L+ G AIHG + Q R +++ F +++ Sbjct: 232 LKHEES-ELVMVFCNTRTNTDFVASNLKALGIGAMAIHGGLTQDKRDRVMKQFHSHDVRV 290 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +V +D+AARGLDIP V H++N+D+P ++YIHRIGRT RAG+ G A ++A D Sbjct: 291 LVCTDVAARGLDIPHVSHIYNYDIPMYGKDYIHRIGRTARAGKDGVAINILASRD 345 >gi|253689449|ref|YP_003018639.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756027|gb|ACT14103.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 441 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 136/354 (38%), Positives = 204/354 (57%), Gaps = 4/354 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L ++ A+ D GY +PT IQ + IP ++ DV G A TGTGKTA+++LP+L Sbjct: 5 NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ R + PR LIL PTRELA QVAD + + +L VA + GG+ + + Sbjct: 65 HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDVATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 DV++ T GR+L + +E L++DEADRMLDMGF I++I + +QT Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ D ++ +E L +P IE + + I + K ALL L Sbjct: 185 LLFSATLEGDAIKDFAERLLNDPVEIESDPSRRERKKILQWYYRA-DDVKHKTALLCHQL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++ IIF +++ V L L + G + C + G + Q R + + +G + ++ Sbjct: 244 KQPDVTRS-IIFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARG+DI DV HVFNFD+P ++ Y+HRIGRTGRAGR G A + V D Sbjct: 303 VATDIAARGIDINDVSHVFNFDLPRTSDTYLHRIGRTGRAGRKGCAISFVEAHD 356 >gi|167752241|ref|ZP_02424368.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216] gi|167660482|gb|EDS04612.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216] Length = 650 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 218/368 (59%), Gaps = 8/368 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPML 60 +F LGLS ++ A+ G+ P+ IQ TIP L+ D+ AQTGTGKTA+F LP++ Sbjct: 6 EFKALGLSDDILTAIAKKGFETPSAIQSLTIPHLLTTDKDIIAQAQTGTGKTAAFGLPII 65 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L +R +P+ ++L PTRELA QV + ++L++A + GG Q ++L+ Sbjct: 66 QMLT---SRRNIPQAIVLVPTRELALQVTQELISFN-THDLSIAPIYGGASMTEQLRRLK 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ TPGRILDH RG L ++ I LV+DEAD ML+MGFI I+ I + ++ Sbjct: 122 KGIDIVVGTPGRILDHIRRGTLDLSAIAYLVLDEADEMLNMGFIEDIEEIMHAMTGPKRV 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM D + ++ N++ P ++V + T + + + K L +++ Sbjct: 182 LLFSATMPDRIAALARNYMHEPDLLKVESQHVTTDLTNQIYFEV--REGDKFDALTRIID 239 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+F + ++ L ++G++ +HG+I Q R KIL FK+ + ++V Sbjct: 240 VEPEF-YGIVFSRTRTGADDIVAKLLERGYAAEVLHGDISQAQREKILGKFKKKQVNILV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ ++ HV N+ +P +++Y+HRIGRTGRAG G A T ++ +++ + Sbjct: 299 ATDVAARGIDVSNLTHVINYSLPQDSDSYVHRIGRTGRAGNQGTAITFISPSEMRKFGFL 358 Query: 361 EKLIEKKV 368 ++ I+ + Sbjct: 359 KRTIKADI 366 >gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40] gi|91207780|sp|Q2UNB7|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3 gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae] Length = 472 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/394 (36%), Positives = 222/394 (56%), Gaps = 14/394 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LGL ++ A GY PT IQ + IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 54 FKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQA 113 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + P + L+L PTRELA Q++ FE G ++ +L+GG+ +Q+ L Sbjct: 114 L------MDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIAL 167 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + N++ LV+DEADR+LDM F P + I ++P R Sbjct: 168 GKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRER 227 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQ 237 +T LFSATM+ +++ + LQNP R+ V++ T T++ ++ + + K L Sbjct: 228 RTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYI--FIPHKHKDLYLVY 285 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ ++ IIFC L L GF +HG + Q +R+ L F+ + Sbjct: 286 LL-NEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRD 344 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V NFD+P ++ +IHRIGRT RAG+ G A + + D++ Sbjct: 345 ILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAW 404 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391 IE + KK+ + + E++ AQ + Sbjct: 405 LRIEGALGKKLPEYPAEKDEVMVLAERVSEAQRS 438 >gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM 20712] Length = 594 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 219/371 (59%), Gaps = 10/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LGL +++ + D G+ P+P+Q K IP++L + +D+ +AQTGTGKTA+F LP+L Sbjct: 4 FKELGLEGEILKGIEDLGFEVPSPVQEKVIPVILGEENDLVALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120 L+ +++ LIL PTREL Q+ + + Y K ++ VA + GG Q ++L+ Sbjct: 64 KLDTSLNAIQV---LILSPTRELCMQIGKDLQNYAKYRSDIRVACVYGGADIRKQIRELD 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG VL+ TPGR+ D R + + + +V+DEAD ML+MGF + I P R T Sbjct: 121 RGVHVLVATPGRLCDLIKREAVKIEQVRAVVLDEADEMLNMGFKEDLNFILDETPAERNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC-ALLQQLL 239 LFSATM E++++++N+L+NP+ I + A+T+ H + Y ++ C L +++ Sbjct: 181 YLFSATMPREVERIAKNYLRNPQEISTGKKNQGADTVTHEY---YQVLARDCYETLHRVI 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 M IIF K + + L+K G A+HG++ Q R ++ F+ ++++ Sbjct: 238 DCAPDM-YAIIFTRTKMDAREIARKLQKDGIDCDALHGDLSQAQRDDVMDRFRAKRLKVL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ ++ HV N+++P E+Y HR GRTGRAGR G + ++ ++ + Sbjct: 297 VATDVAARGLDVDNLTHVINYNLPEDVESYTHRSGRTGRAGREGISVAIINSKEKGKLRR 356 Query: 360 IEKLIEKKVDW 370 IE +++KK + Sbjct: 357 IENILKKKFQY 367 >gi|40225538|gb|AAH11927.2| DDX27 protein [Homo sapiens] gi|48257213|gb|AAH16060.2| DDX27 protein [Homo sapiens] Length = 767 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 189 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 248 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 249 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 308 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 309 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 368 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 369 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 428 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 429 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 488 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 489 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 548 Query: 360 IEK 362 I K Sbjct: 549 IVK 551 >gi|307133003|ref|YP_003885019.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] gi|306530532|gb|ADN00463.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] Length = 428 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 216/373 (57%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F+D L P+V+ A+ + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR LI+ PTRELA Q+ + E K L + L GG ++ Q K Sbjct: 71 LLTHPAPAERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + M I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LEDGVDILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDIWGHLASDGHRVGLLTGDVAQKKRLRILEDFTQGN 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I ++ Sbjct: 367 NLPAIEDYIGHRI 379 >gi|255080620|ref|XP_002503883.1| predicted protein [Micromonas sp. RCC299] gi|226519150|gb|ACO65141.1| predicted protein [Micromonas sp. RCC299] Length = 754 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/399 (35%), Positives = 223/399 (55%), Gaps = 38/399 (9%) Query: 11 KVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK----- 65 +V A+ GY KP+PIQ+ +IP+ L + DV GIA+TG+GKT +FV+PML +++ Sbjct: 332 QVKRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAYIQELPPMT 391 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 P L++ PTRELA Q+ + K+ + N VA ++GG E Q KL RG ++ Sbjct: 392 DEVAALGPYALVMAPTRELAQQIEEETVKFAQFMNYRVASVVGGQSIEEQGFKLRRGCEI 451 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--------------- 170 +I TPGRI+D R ++ +V+DEADRM+DMGF P + ++ Sbjct: 452 VIGTPGRIIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVISVMDSMSAESLKPEEEA 511 Query: 171 ---------TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF 221 SL R T +FSATM ++K++ +++NP + + + T++ I+ Sbjct: 512 EKIDEQGLEASLGTKYRMTYMFSATMPPSVEKLARKYMRNPAVVTIGSAGKTSDLIKQ-- 569 Query: 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK---NVVNLCHSLEKQGFSVCAIHGN 278 + + ++K A L+ +L SQ IIF N K+ +V NLC K G+SV AIHG Sbjct: 570 IVQWTTSNQKPAQLELVL-SQYPDTQAIIFVNTKRVVDHVSNLCF---KMGYSVGAIHGG 625 Query: 279 IDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338 Q R + L FK+G ++VA+D+A RG+D+ + V N+++P ENY HRIGRTGR Sbjct: 626 KSQDQREESLRGFKQGEYDILVATDVAGRGIDVKGIDLVVNYEMPLVIENYTHRIGRTGR 685 Query: 339 AGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377 AGR G A + + ED + +++L+ + + G+L++ Sbjct: 686 AGRQGTAVSFLTSEDTDVMYELKELLTNSGNHVPGELAN 724 >gi|114682559|ref|XP_001166388.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 3 [Pan troglodytes] Length = 791 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577 Query: 360 IEK 362 I K Sbjct: 578 IVK 580 >gi|313231894|emb|CBY09006.1| unnamed protein product [Oikopleura dioica] Length = 1234 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 215/368 (58%), Gaps = 18/368 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G K++ A+ + G+ PTPIQ +IP+ + D+C A TG+GKT +FVLP+L Sbjct: 105 FADYGFERKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPILQ- 163 Query: 63 LEKGRARVRMP-------RTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEA 114 R +R P R L+L PTREL QV F K + N+TVA GG+ Sbjct: 164 ----RFALRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQ 219 Query: 115 QNKKLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L R D+L+ TPGR++DH N + IEILV+DEADRMLD F ++ I S Sbjct: 220 QTQVLRRDPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQ 279 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKC 232 TRQT+LFSATMTD +Q++++ L P +I +++ + A+ +E FV + + Sbjct: 280 TCKTRQTMLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDRE 339 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 A++ L +S ++ +I +K + L G V +HG++ Q +R++ L+NFK Sbjct: 340 AMVAALNKS---LRMLLILYQTRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFK 396 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +MV +D+AARGLDIP V V N +PN ++Y+HR+GRT RAG+ G++ +LV + Sbjct: 397 NGTAHIMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGES 456 Query: 353 DIKHIDAI 360 + K + I Sbjct: 457 EWKILKMI 464 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 215/368 (58%), Gaps = 18/368 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD G K++ A+ + G+ PTPIQ +IP+ + D+C A TG+GKT +FVLP+L Sbjct: 654 FADYGFERKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPILQ- 712 Query: 63 LEKGRARVRMP-------RTLILEPTRELAAQVADNFEK-YGKNYNLTVALLIGGIPFEA 114 R +R P R L+L PTREL QV F K + N+TVA GG+ Sbjct: 713 ----RFALRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQ 768 Query: 115 QNKKLERGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q + L R D+L+ TPGR++DH N + IEILV+DEADRMLD F ++ I S Sbjct: 769 QTQVLRRDPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQ 828 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKC 232 TRQT+LFSATMTD +Q++++ L P +I +++ + A+ +E FV + + Sbjct: 829 TCKTRQTMLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDRE 888 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 A++ L +S ++ +I +K + L G V +HG++ Q +R++ L+NFK Sbjct: 889 AMVAALNKS---LRMLLILYQTRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFK 945 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +MV +D+AARGLDIP V V N +PN ++Y+HR+GRT RAG+ G++ +LV + Sbjct: 946 NGTAHIMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGES 1005 Query: 353 DIKHIDAI 360 + K + I Sbjct: 1006 EWKILKMI 1013 >gi|237739222|ref|ZP_04569703.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31] gi|229422830|gb|EEO37877.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31] Length = 529 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 213/372 (57%), Gaps = 15/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F +LGL KV+ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRELGLGEKVLKVLSKKGYESPTPIQKLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E ++ ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFETSDHHIQ---AIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ V+DEAD ML+MGFI I+ I + ++ Sbjct: 126 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRM 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM E+ K+++ ++ + + V + T + E + V ++ C ++ Sbjct: 186 LFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 242 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 243 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 298 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ VP E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 299 NILVATDVAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 358 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 359 LLQIQKAVKKEI 370 >gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca mulatta] Length = 763 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 185 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 244 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 245 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 304 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 305 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 364 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 365 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 424 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 425 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 484 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 485 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 544 Query: 360 IEK 362 I K Sbjct: 545 IVK 547 >gi|330447422|ref|ZP_08311071.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491613|dbj|GAA05568.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 411 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF++L L +++ A+ + GY +PT +Q + IP L DV A TGTGKTA+F+LPM+ Sbjct: 3 DFSELELDSELLQAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQ 62 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + R L+L PTRELA QVAD K+ L V + GGI ++ + L Sbjct: 63 HLLDFPRKKPGPARVLVLTPTRELAIQVADQARTLAKHTMLKVFTITGGISYDEHAELLG 122 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + D+++ TPGR++++ K IE L++DEADRMLDMGF ++ + + Q+ Sbjct: 123 KTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKVVERLNHECRWRSQS 182 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ + +++ SE L P +E PS H K ALL+ +L Sbjct: 183 LLFSATLEGKGVREFSEKILNEPVEVEAE-PSRRERKKIHQLYHRCDNMEHKLALLENIL 241 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + Q + IIF ++ + L LE G I G + Q +R +++ F++G I ++ Sbjct: 242 KEQ--AERTIIFVKTRERLAVLRGQLETMGIPCNWIQGEMAQSARNNMITRFRDGVINVL 299 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV NFD+P A+ Y+HRIGRT RAG+ G A +L+ D I+ Sbjct: 300 IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGTAISLIEAHDQAMIER 359 Query: 360 IEKLIEKKV 368 + + ++++V Sbjct: 360 VSRYMKEEV 368 >gi|296102188|ref|YP_003612334.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056647|gb|ADF61385.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 457 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 136/354 (38%), Positives = 211/354 (59%), Gaps = 8/354 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY+ TP+Q +P +L+ DV A+TG+GKTA+F L +L ++ A + ++L+L Sbjct: 22 GYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQHID---ATLLQTQSLVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N + L GG PF AQ L+ +++ TPGR+LDH Sbjct: 79 PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQ 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + ++ ++ LV+DEADRMLDMGF I + P RQTLLFSAT D + +S Sbjct: 139 KSTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPEDRQTLLFSATWPDAIAAISGRV 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 +NP IE+++ + IE F T Q K LLQ+LL SQ + ++FCN KK+ Sbjct: 199 QKNPLTIEIDSVDAL-PAIEQQFFETSQQ--GKIPLLQKLL-SQHQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +C +L G S ++HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVV 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372 N+++ E ++HRIGRT RAG G A + A E+ + + + ++++ K++W+N Sbjct: 315 NYELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQIKLNWVN 368 >gi|242022378|ref|XP_002431617.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative [Pediculus humanus corporis] gi|212516925|gb|EEB18879.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative [Pediculus humanus corporis] Length = 788 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 142/415 (34%), Positives = 223/415 (53%), Gaps = 45/415 (10%) Query: 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 P+ + +++ GY + TPIQ + IP+ LQ D+ G+A+TG+GKT +F++P++ ++ Sbjct: 368 PQEILDIIERVGYTEATPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLIMWIQSLPK 427 Query: 69 RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 RM P +IL PTRELA Q+ + K+G + +++GG+ E Q +L G Sbjct: 428 IQRMEDADQGPYAIILAPTRELAQQIEEETNKFGNPLGIRTVVVVGGLSREEQGFRLRLG 487 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P T Sbjct: 488 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 547 Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217 RQT++F+ATM +++++ +L+ P + + + E + Sbjct: 548 TEEAEDDKFLLANYNSKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPVERV 607 Query: 218 EHC--FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAI 275 E V+ + K C LL + ++ IIF NQKK L LEK G++ C + Sbjct: 608 EQIVHIVSEQDKRRKLCELLARGVEPP-----VIIFVNQKKGADVLARGLEKLGYNACTL 662 Query: 276 HGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGR 335 HG Q R LS+ K GT ++VA+D+A RG+DI DV V N+D+ E+Y HRIGR Sbjct: 663 HGGKGQEQREYALSSLKNGTKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGR 722 Query: 336 TGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 TGRAG+HG A + K+D +++LI L+ +S+ P L AQH Sbjct: 723 TGRAGKHGIAVSFCTKDDSGLFYDLKQLI------LSSPISTCPPELLNHPDAQH 771 >gi|292897893|ref|YP_003537262.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946] gi|291197741|emb|CBJ44836.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946] gi|312170722|emb|CBX78984.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158] Length = 430 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 151/398 (37%), Positives = 227/398 (57%), Gaps = 24/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ G+ TPIQ +P L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +GR +V PR LIL PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAPEGR-QVNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE G DVLI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLESGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q L LFSAT++ +++++ + N + +EV T I E F Y +K L Sbjct: 190 SQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELF---YPSNEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ L++ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 247 LQTLIE-EEWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG +G + +L +E Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA 365 Query: 355 KHIDAIEKLIEKKV-------DWLNGDLSSLNPPLEKI 385 ++ AIE+ I + D L GDL PP +++ Sbjct: 366 LNLTAIEEYIGHSIPVSRYNSDALMGDL----PPPKRL 399 >gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD 2210633] gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034] gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466] gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037] gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD 2210633] gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466] gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034] gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037] gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329] Length = 407 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L ++ A+ + GY +PT IQ + IP L D+ A TGTGKTA+FVLP L Sbjct: 5 FAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA QVAD KN L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+ ++ + + IE LV+DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239 LFSAT+ + ++ + + L P I+ +P + I + A A++ K ALL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEH--KLALLKHII 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F ++ + L LE I G + Q R ++ F++GT+ ++ Sbjct: 243 TEQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A ++V D +D Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360 Query: 360 IEKLIEKKV 368 + + +++ + Sbjct: 361 VARYVKEDI 369 >gi|292486656|ref|YP_003529526.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430] gi|291552073|emb|CBA19110.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430] Length = 430 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 151/398 (37%), Positives = 227/398 (57%), Gaps = 24/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ G+ TPIQ +P L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +GR +V PR LIL PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAPEGR-QVNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE G DVLI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLESGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q L LFSAT++ +++++ + N + +EV T I E F Y +K L Sbjct: 190 SQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELF---YPSNEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ L++ + + IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 247 LQTLIEEEWPDRT-IIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG +G + +L +E Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA 365 Query: 355 KHIDAIEKLIEKKV-------DWLNGDLSSLNPPLEKI 385 ++ AIE+ I + D L GDL PP +++ Sbjct: 366 LNLTAIEEYIGHSIPVSRYNSDALMGDL----PPPKRL 399 >gi|223041595|ref|ZP_03611794.1| ATP-dependent RNA helicase [Actinobacillus minor 202] gi|223017570|gb|EEF15982.1| ATP-dependent RNA helicase [Actinobacillus minor 202] Length = 443 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 213/368 (57%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L LSP+++ A+ GY +PT +Q +TIP L D+ G A TGTGKTA+F+LP + Sbjct: 8 LTFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPAI 67 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ E+ + NL++A + GG+ ++ + Sbjct: 68 QHLLDYPRRKPGAPRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVAYQNHGEVF 127 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR++ + +EIL+ DEADRML MGF + I + + + Sbjct: 128 NKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKH 187 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ E L +E L +P +IE + I+ + K LL +L Sbjct: 188 TWLFSATLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWYYHA-DNLDHKTKLLARL 246 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + M+ I+F +++ V L +L K+G + G++ Q R + ++ K+ + + Sbjct: 247 IKDFE-MEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQRNQAINRLKDSVVNV 305 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +V++D+AARG+DI DV V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 306 LVSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLG 365 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 366 KIKRYTEE 373 >gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus] gi|142980808|sp|A1A4H6|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName: Full=DEAD box protein 27 gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus] gi|296481114|gb|DAA23229.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus] Length = 765 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 214/364 (58%), Gaps = 3/364 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + ++T L +GG+ ++Q L Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 306 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + + A++ L Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L T + ++F KK + L G V +HGN+ Q R++ L FK+ I + Sbjct: 427 LMRTFT-DHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 485 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 486 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 545 Query: 359 AIEK 362 I K Sbjct: 546 EIVK 549 >gi|300714781|ref|YP_003739584.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661] gi|299060617|emb|CAX57724.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661] Length = 430 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 150/391 (38%), Positives = 224/391 (57%), Gaps = 17/391 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ G+ TPIQ +P L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +GR +V PR LIL PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSNPAPEGR-QVNQPRALILAPTRELAVQIHADAEPLTQATGLKLGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q L LFSAT++ +++++ + N + +EV T I E F Y +K L Sbjct: 190 NQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 247 LQTLLE-EEWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG +G + +L +E Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA 365 Query: 355 KHIDAIEKLIEKK--VDWLNGD--LSSLNPP 381 ++ AIE+ I V N D ++ L PP Sbjct: 366 LNLPAIEEYIGHSITVSRYNSDALMTELPPP 396 >gi|32425487|gb|AAH09304.2| DDX27 protein [Homo sapiens] Length = 769 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 191 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 250 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 251 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 310 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 311 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 370 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 371 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 430 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 431 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 490 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 491 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 550 Query: 360 IEK 362 I K Sbjct: 551 IVK 553 >gi|261820510|ref|YP_003258616.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae WPP163] gi|261604523|gb|ACX87009.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae WPP163] Length = 441 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 135/354 (38%), Positives = 203/354 (57%), Gaps = 4/354 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L ++ A+ D GY +PT IQ + IP ++ DV G A TGTGKTA+++LP+L Sbjct: 5 NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ R + PR LIL PTRELA QVAD + + +L +A + GG+ + + Sbjct: 65 HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 DV++ T GR+L + +E L++DEADRMLDMGF I++I + +QT Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSAT+ D ++ +E L P IE + + I + K ALL L Sbjct: 185 MLFSATLEGDAIKDFAERLLNEPIEIESDPSRRERKKILQWYYRA-DDLKHKTALLCHQL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++ IIF +++ V L L + G + C + G + Q R + + +G + ++ Sbjct: 244 KQPDVTRS-IIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARG+DI DV HVFNFD+P A+ Y+HRIGRTGRAGR G A + V D Sbjct: 303 VATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHD 356 >gi|146283021|ref|YP_001173174.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501] gi|145571226|gb|ABP80332.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501] Length = 455 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 215/369 (58%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +++ AV + +V+PTP+Q+ IP L+ D+ AQTG+GKTA+FVLPML Sbjct: 14 FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 73 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+ R+ R LIL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 74 L-IGDAQPRVDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DVLI TPGR+++H N G L++ ++EILVIDEADRMLDMGF +Q + +QTL Sbjct: 133 VPDVLIGTPGRLIEHLNAGSLILKDVEILVIDEADRMLDMGFAEDMQRLVGECQKRQQTL 192 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L++P +++N S E+ + T + K L+ LL Sbjct: 193 LFSATSGGAGLREMVAKVLRDPLHLQLNRVSELNESTRQQII-TADDVAHKEKLVHWLL- 250 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + ++ + +IF N + L L V +HG DQ+ R + K+G ++++V Sbjct: 251 ANESYQKAVIFTNTRAQADRLYGHLVASDIKVFVLHGEKDQKERKLAIERLKQGGVKVLV 310 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NFD+P + Y+HRIGRTGRAG G A +L+ D + +I Sbjct: 311 ATDVAARGLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSI 370 Query: 361 EKLIEKKVD 369 E+ ++++ + Sbjct: 371 ERYLKQRFE 379 >gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan troglodytes] Length = 796 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577 Query: 360 IEK 362 I K Sbjct: 578 IVK 580 >gi|226305684|ref|YP_002765644.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] gi|226184801|dbj|BAH32905.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] Length = 474 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 148/390 (37%), Positives = 213/390 (54%), Gaps = 28/390 (7%) Query: 34 LVLQRHDVCGIAQTGTGKTASFVLPML---TILEKGRARVR-MPRTLILEPTRELAAQVA 89 + L D+ G A+TG GKT F +P+L E G A + PR LI+ PTREL QVA Sbjct: 1 MALAGDDLIGQARTGMGKTFGFGVPLLHRIVTAENGTAVLDGTPRALIIVPTRELCIQVA 60 Query: 90 DNFEKYGK-----NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144 + E K + L V + GG P+EAQ L++G DV++ TPGR+LD N+ L++ Sbjct: 61 RDLENASKYLRVGDRGLQVLPIYGGRPYEAQISALQKGVDVVVGTPGRLLDLANQSHLIL 120 Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204 + +LV+DEAD MLD+GF+P I+ + +VP RQT+LFSATM + ++ FL P Sbjct: 121 GKVGVLVLDEADEMLDLGFLPDIERLMGMVPDKRQTMLFSATMPGPIITLARTFLTQPTH 180 Query: 205 IEVNTPSSTA---ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261 I S+A T +H + A K ++ ++LQ++ +IF K+ + Sbjct: 181 IRAEEAESSAVHDRTSQHIY---RAHALDKAEMVARVLQAEGRGAT-MIFTRTKRTAQKV 236 Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321 L ++GFSV A+HG++ Q +R K L F+ G + ++VA+D+AARG+DI DV HV N+ Sbjct: 237 ADDLAERGFSVGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDDVTHVINYQ 296 Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 P + Y+HRIGRTGRAGR G A TLV +DI I+K + SL P Sbjct: 297 CPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLIDKAL------------SLGIP 344 Query: 382 LEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + H + IP + G RR K Sbjct: 345 DPVETYSSSPHLYEELSIPADAKGTVRRAK 374 >gi|329905038|ref|ZP_08273973.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium IMCC9480] gi|327547774|gb|EGF32547.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium IMCC9480] Length = 461 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 149/386 (38%), Positives = 213/386 (55%), Gaps = 14/386 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LSP ++ + GY + TPIQ K++P++L R D+ A+TG+GKTA+F + +L Sbjct: 8 FSTLALSPSMLANLDSLGYHEMTPIQAKSLPVILDRRDLIAQAKTGSGKTAAFGIGILQR 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L ++ L++ PTRELA QV++ + + N + L GG P Q LE Sbjct: 68 LNPTWFAIQ---ALVICPTRELADQVSNELRRLARFADNTKILTLCGGAPMRPQIASLEH 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ DH RG + ++ ++ LV+DEADRM+DMGF I I S P RQTL Sbjct: 125 GAHIIVGTPGRLRDHIGRGSIDLSTVQTLVLDEADRMVDMGFYEEISGIVSACPTRRQTL 184 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D+++K S FL++P I V IE F Y + + +LL + Sbjct: 185 LFSATYPDDIRKSSAPFLRDPTEITVEAQHDD-NRIEQRFYEV--GYDDRNDAVGRLLNN 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + FCN K + L L QGFS A++G ++QR R +IL F G+ ++VA Sbjct: 242 YKP-ASALAFCNTKIHCRELADELRAQGFSAMALYGELEQRERDEILVLFANGSCSVLVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E +IHR+GRTGR G A +L A + K + IE Sbjct: 301 TDVAARGLDIQSLEMVINVDVSKDTEVHIHRVGRTGRGAARGLALSLCAPNEKKWVKLIE 360 Query: 362 KLIEKKVDWLNGDLSSL----NPPLE 383 V W DL+ L P LE Sbjct: 361 DYQHGPVSWF--DLADLEVAPGPALE 384 >gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS 112818] gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97] Length = 474 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 218/369 (59%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 51 FKDLGIIDSLCDACTSLGYKNPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK + L+L PTRELA Q+ + FE G ++ A+++GG+ +Q+ L + Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + N++ LV+DEADR+LD+ F P + I ++P R+T Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT++ +++ + L NP R+ +++ T T+ ++ +Y K L+ L Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDIYLVHIL- 284 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + IIF L L GF +HG + Q +R+ L F+ G+ ++ Sbjct: 285 -NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDIL 343 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP V V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++ Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQR 403 Query: 360 IEKLIEKKV 368 IE + K++ Sbjct: 404 IEAALGKQL 412 >gi|294783794|ref|ZP_06749118.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp. 1_1_41FAA] gi|294480672|gb|EFG28449.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp. 1_1_41FAA] Length = 529 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 213/372 (57%), Gaps = 15/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F +LGL KV+ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRELGLGEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E ++ ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFETSDHHIQ---AIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 125 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ V+DEAD ML+MGFI I+ I + ++ Sbjct: 126 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRM 185 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM E+ K+++ ++ + + V + T + E + V ++ C ++ Sbjct: 186 LFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 242 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 243 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 298 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ VP E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 299 NILVATDVAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 358 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 359 LLQIQKAVKKEI 370 >gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo sapiens] Length = 763 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577 Query: 360 IEK 362 I K Sbjct: 578 IVK 580 >gi|149277253|ref|ZP_01883395.1| DEAD box-related helicase (ATP-dependent RNA helicase) [Pedobacter sp. BAL39] gi|149232130|gb|EDM37507.1| DEAD box-related helicase (ATP-dependent RNA helicase) [Pedobacter sp. BAL39] Length = 412 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 220/374 (58%), Gaps = 9/374 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF + +P++ +L G+ TPIQ + IPL+L + D+ AQTGTGKT +++LP++ Sbjct: 1 MDFQEFNFNPELFEGLLAMGFRNATPIQQEAIPLILSKKDLIACAQTGTGKTGAYLLPIM 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 ++ +R TLIL PTRELA Q+ E N++ + GG I +E Q + Sbjct: 61 NMITG--TEIRHNNTLILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQKR 118 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + G D++I TPGR++ H + G L ++ ++ LV+DEADRMLDMGF I I S +P Sbjct: 119 SMRDGVDIIIATPGRLISHLSSGALKLDQLQHLVLDEADRMLDMGFYDDIMRIVSFLPKE 178 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT+LFSATM +++K++ L NP++I + A + ++ S+K LL + Sbjct: 179 RQTVLFSATMPPKIRKLASTLLSNPEQISIAISKPAAGINQQAYI---VHDSQKVKLLTE 235 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L+++ D + +IF + K+ V NL GF A H ++ Q+ R IL FK + Sbjct: 236 LMKNVD-FPSILIFASTKEKVKNLGKVFRGLGFKAEAFHSDLGQKEREAILLEFKNKRVP 294 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++ +D+ +RG+D+ + V N+DVP+ E+YIHRIGRT RA G A TLV +D + Sbjct: 295 VLIGTDVLSRGIDVEGISLVINYDVPHDPEDYIHRIGRTARAATTGTAITLVNDKDKRKF 354 Query: 358 DAIEKLIEKKVDWL 371 IEKLIE+++D + Sbjct: 355 ANIEKLIERQIDRM 368 >gi|220917833|ref|YP_002493137.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955687|gb|ACL66071.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 652 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 5/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D+GLS V AV + GY KPTP+Q T + DV ++TGTGKTA+F +P+L Sbjct: 22 FDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILER 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + GR R P L++ PTRELA QVA+ K+ +L V + GG Q KL+ G Sbjct: 82 IPDGR---RKPSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAG 138 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A++++ TPGRI DH R L + + + +DEAD ML+MGF + I +P Q LL Sbjct: 139 AEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLL 198 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++++ ++L +P+ I ++ E I + T Y K LL + Sbjct: 199 FSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPRNLLYMI--GM 256 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFCN + + + L + G+ ++G++ Q+ R ++++ K G ++ MVA+ Sbjct: 257 EEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVAT 316 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI D+ HV N+ +P ++HR+GRTGR G+ G + +LV+ D+ + A++K Sbjct: 317 DIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTALQK 376 Query: 363 LIE 365 E Sbjct: 377 KYE 379 >gi|152992308|ref|YP_001358029.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1] gi|151424169|dbj|BAF71672.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1] Length = 447 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 217/370 (58%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA L LS + + GY +PTPIQ K IP +L + AQTG+GKT +++LP L Sbjct: 1 MSFASLKLSTALTELLEGEGYARPTPIQQKLIPALLDGQNAIASAQTGSGKTLAYLLPAL 60 Query: 61 TIL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + E + PR IL PT+ELA Q+ + + +L V LL GG + ++ Sbjct: 61 QQINPEAEKVTHHYPRLFILSPTKELAQQIYEVSRPFVNALDLNVVLLQGGGRRTVETER 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++G DV+I TP R L+H + + I LV+DEAD M DMGF+ Y++ I +++ Sbjct: 121 LKKGVDVIIATPQRALEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGYLEKIFTMMTERS 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 Q ++ SAT+T + K+++ +++ KRIE++ P A+TI SKK ALL L Sbjct: 181 QKIIVSATITPRVIKLAKTYIKPLKRIELDPPGKIADTITQMLYPVLR--SKKEALLAWL 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S + K ++F +K+ + SL + V +HG + R K L+ F+EG ++ Sbjct: 239 ISSGNYEKV-LLFVRKKELADGVAESLRSWDYKVGILHGERTHQERKKSLNAFREGRYRI 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI D+ V N+D+P+ ++IHR+GRTGRAGR G A TLV+ ++I+ + Sbjct: 298 LVATDIAARGLDISDLDVVINYDIPHVKHDFIHRVGRTGRAGREGIAITLVSPDEIEQLH 357 Query: 359 AIEKLIEKKV 368 ++K++ K+ Sbjct: 358 DLQKVLGGKI 367 >gi|317507502|ref|ZP_07965226.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974] gi|316254189|gb|EFV13535.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974] Length = 403 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 212/362 (58%), Gaps = 14/362 (3%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 + P++V ++ +AG IQ + +PL L HD+ G A+TG GKT +F +P+L + + + Sbjct: 1 MHPEIVASLAEAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGVPLLQRVAEAQ 60 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT------VALLIGGIPFEAQNKKLER 121 A PR L++ PTREL QV ++ + K L + L GG P+E Q L++ Sbjct: 61 AE-DSPRALVVVPTRELCLQVTNDLAEASKQLKLADGRPTRIVSLYGGRPYEGQIATLQK 119 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G DV++ TPGR+LD ++RG L +N I +LV+DEAD MLD+GF+P ++ I + +P +QT+ Sbjct: 120 GVDVVVGTPGRLLDLWSRGDLKLNAIRMLVLDEADEMLDLGFLPDVEKIMAKLPTGKQTM 179 Query: 182 LFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT+ + ++ F+ P I + T +H + A K L+ + Sbjct: 180 LFSATIPGPVLTLARTFMTQPTHIRAEGGDLAPVHERTTQHVY---RAHALNKDELVSRF 236 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ++ +IF K++ L L +GF+ ++HG++ Q +R + LS F++G I++ Sbjct: 237 LQAEGRGTT-MIFTRTKRSAGKLAEELTLRGFNAGSLHGDMSQGAREEALSGFRKGKIEI 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +V +D+AARG+DI + HV N+ P + Y+HRIGRTGRAGR G A TLV ED+ + Sbjct: 296 LVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGNAITLVDWEDLPRWE 355 Query: 359 AI 360 I Sbjct: 356 YI 357 >gi|297833410|ref|XP_002884587.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp. lyrata] gi|297330427|gb|EFH60846.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp. lyrata] Length = 1097 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 131/335 (39%), Positives = 197/335 (58%), Gaps = 2/335 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GL P+++ +L AG+ PTPIQ +T P+ LQ D+ IA+TG+GKT +++P + Sbjct: 438 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 497 Query: 63 LEKGRARVR-MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L R R P LIL PTRELA Q+ D ++G++ ++ L GG P Q K+LER Sbjct: 498 LRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELER 557 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GAD+++ TPGR+ D K+ + +LV+DEADRMLDMGF P I+ I + + RQTL Sbjct: 558 GADIVVATPGRLNDILEMKKIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEISPRRQTL 617 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 +++AT E++K++ + L NP ++ + A +K L+Q+L+S Sbjct: 618 MYTATWPKEVRKIASDLLVNPVQVNIGKVDELAANKAITQYVEVVPQMEKERRLEQILRS 677 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q+ IIFC+ K+ +L S+ + F IHG+ Q R +LS F+ G +++A Sbjct: 678 QERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLSQFRSGKSCILIA 736 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRT 336 +D+AARGLDI D+ V +D P E+Y+HRIGRT Sbjct: 737 TDVAARGLDIKDIRVVITYDFPTGVEDYVHRIGRT 771 >gi|89902341|ref|YP_524812.1| ATP-dependent RNA helicase DbpA [Rhodoferax ferrireducens T118] gi|89347078|gb|ABD71281.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118] Length = 473 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 151/441 (34%), Positives = 231/441 (52%), Gaps = 18/441 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L+P + + GY++ TPIQ ++P L D+ A+TG+GKTA+F L +L Sbjct: 20 FESLALNPATLANLQQLGYLEMTPIQAASLPAALAGKDLIAQAETGSGKTAAFALALLER 79 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R V+ L+L PTRELA QV + + N+ V L GG+ Q LE+ Sbjct: 80 LNPRRFAVQ---ALVLCPTRELADQVTIEIRRLARATDNIKVVTLCGGVALRGQRASLEQ 136 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++DH R L + + LV+DEADRMLDMGF + + P RQTL Sbjct: 137 GAHIVVGTPGRVMDHLAREYLNLEALNTLVLDEADRMLDMGFFDDMATVAKQCPKERQTL 196 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + ++K+++ F++ P R++V + + + + T A + ALL + Sbjct: 197 LFSATYPEGIEKLAQQFMREPLRVQVAAQQTESLIEQRFYEVTRANRFEAVALLLNHFRP 256 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K+ +L L+ QGFS A++G ++QR R ++L+ F + ++VA Sbjct: 257 ISTLA----FCNTKQQCKDLVTYLQAQGFSALALYGELEQRERDQVLAQFSNRSASVLVA 312 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDI + V N D+ E ++HRIGRTGRAG G A +L + ++ + IE Sbjct: 313 TDVASRGLDITQLEAVINVDITPDPEVHVHRIGRTGRAGESGLALSLASMNEMGSVGKIE 372 Query: 362 KLIEKKVDWLNGD------LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYS- 414 + +++ W D L PP+ + I RK P G YS Sbjct: 373 QYQKRESVWHKLDELKPTGQGPLLPPMVTLQIL---GGRKEKIRPGDVLGALTADAGYSR 429 Query: 415 SQKSHIPLKESEKISKLQQDI 435 Q I + E +Q+DI Sbjct: 430 EQIGKIVVTEFTTFVAVQRDI 450 >gi|313682403|ref|YP_004060141.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM 16994] gi|313155263|gb|ADR33941.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM 16994] Length = 417 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 210/365 (57%), Gaps = 6/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F L +V AV ++GY PTPIQ K IPLVL+++D+ AQTG+GK+ASFVLP+L Sbjct: 1 MPFLHFSLLSPIVQAVKESGYTHPTPIQEKVIPLVLEKNDILARAQTGSGKSASFVLPIL 60 Query: 61 TILEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFEAQNK 117 + R+ + + LIL PTREL QVA FE GK+ + V +IGG Q Sbjct: 61 HLWSLSRSEGKGKIKALILTPTRELTLQVAQAFESMGKHLPIKPKVLSIIGGESIGDQLY 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +++G D+L+ T GR LD + ++ ++++E V+DEAD+MLD+GF ++ I +P Sbjct: 121 AIQQGCDILVATSGRFLDVLKKKQMNLSHLEFFVLDEADKMLDLGFAEELELILDAIPQK 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT +++ ++ NP + + T + I + + + LL+ Sbjct: 181 RQNLLFSATYPPKMESIASKITPNPIHVTLEAEMPTVQNIHQRVIEVNPE--NRGPLLRH 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL ++ + ++F K+ N+ K GFS + +G++ Q R +L FK+ I+ Sbjct: 239 LLNTE-KWEQVLVFMANKRASDNIAAKFRKYGFSADSFNGDLLQEDRNYVLEQFKKKKIR 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++ A+D+AARGLDI D+ V NFD+P +YIHRIGRTGRAG+ G A + + + H Sbjct: 298 ILFATDIAARGLDIDDITCVVNFDLPRSPADYIHRIGRTGRAGKSGLAISFIGFAERDHF 357 Query: 358 DAIEK 362 IEK Sbjct: 358 ALIEK 362 >gi|90578403|ref|ZP_01234214.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14] gi|90441489|gb|EAS66669.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14] Length = 461 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 219/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P ++ + GY TPIQ +++PL+L+ DV +TG+GKTA+F L +L Sbjct: 6 FSSLNLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ R RV+ TL+L PTRELA QVA + + +N+ V L GG PF Q LE Sbjct: 66 LKVKRFRVQ---TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ +H +G L ++ + LV+DEADRML+MGF + IT + P RQTL Sbjct: 123 GAHIIVGTPGRVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAITDVAPSDRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++ +++ ++NP ++V + + +H F + + A+ +LL S Sbjct: 183 LFSATYPTQIASIAKRIMRNPVEVKVESNHDNSSISQH-FYKVESNDDRLRAV--RLLLS 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ +IFCN K+ + LE GFS A+HG+++QR R + L F + ++VA Sbjct: 240 QHRPESCVIFCNTKREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI ++ V N+ + E ++HRIGRTGRAG G A +L + ++ + +E Sbjct: 300 TDVAARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLE 359 Query: 362 KLIEKKV 368 +++ + Sbjct: 360 DYLDRPI 366 >gi|326531018|dbj|BAK04860.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326531744|dbj|BAJ97876.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 415 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 212/355 (59%), Gaps = 4/355 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D G ++ A+ GY KPT IQ + +P+VL D+ GIA+TG+GKTA+FVLPM+ Sbjct: 41 NFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIV 100 Query: 62 -ILEKGR-ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 I+++ + P +I PTRELA Q+ +K+ K YNL VA + GG+ Q K+L Sbjct: 101 HIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVAAVYGGVSKFEQFKEL 160 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + G ++++ TPGR++D L M V+DEADRM D+GF P I++I + RQ Sbjct: 161 KSGCEIVVATPGRLIDLLKMKALRMFRATYSVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 220 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM ++++++ L + R+ V S E I+ + K LL+++ Sbjct: 221 TLLFSATMPYKVERLAREILTDLIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKMP 280 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 D + ++F +K V + + L + GF V A+HG+ DQ SRM+ L FK G ++ Sbjct: 281 GMIDD-GDVLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYHVL 339 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG-RHGKAFTLVAKED 353 VA+D+AARGLDI + V NFD+ + +IHRIGRTGRAG + G A+TL+ +++ Sbjct: 340 VATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 394 >gi|197123043|ref|YP_002134994.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K] gi|196172892|gb|ACG73865.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K] Length = 651 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 5/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D+GLS V AV + GY KPTP+Q T + DV ++TGTGKTA+F +P+L Sbjct: 22 FDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILER 81 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + GR R P L++ PTRELA QVA+ K+ +L V + GG Q KL+ G Sbjct: 82 IPDGR---RKPSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAG 138 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A++++ TPGRI DH R L + + + +DEAD ML+MGF + I +P Q LL Sbjct: 139 AEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLL 198 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++++ ++L +P+ I ++ E I + T Y K LL + Sbjct: 199 FSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPRNLLYMI--GM 256 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFCN + + + L + G+ ++G++ Q+ R ++++ K G ++ MVA+ Sbjct: 257 EEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVAT 316 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI D+ HV N+ +P ++HR+GRTGR G+ G + +LV+ D+ + A++K Sbjct: 317 DIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTALQK 376 Query: 363 LIE 365 E Sbjct: 377 KYE 379 >gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14] Length = 463 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 146/391 (37%), Positives = 222/391 (56%), Gaps = 13/391 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ + A+ G+ KP+ IQ + IP L D+ G+A+TG+GKT +FV+P+L Sbjct: 31 FEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQS 90 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + R+ L+L PTRELA Q+++ FE G + L A ++GGI Q L R Sbjct: 91 LLRSPQRLY---ALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARK 147 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR++DH K + I+ LV+DEADRML M F I I L+P R T Sbjct: 148 PHIIIATPGRLVDHLENTKGFSLRTIKFLVLDEADRMLSMDFEEEINQIVQLMPSERNTY 207 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT ++ K+ L NP +IE+ +T E + ++ A++ K C L + + Sbjct: 208 LFSATMTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLFIPAKF-KDCYL--SYILN 264 Query: 242 QDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + ++ +IF CN + V + +L GF +HG + Q +R+ L+ FK T ++ Sbjct: 265 EVAGQSILIFASTCNGTQKVTLMLRNL---GFQAICLHGQMSQPNRLGALNKFKAKTRKI 321 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +V +D+A+RGLDIP V V N+D+P ++YIHR+GRT RAGR G A + V + D++ Sbjct: 322 LVCTDVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQYDVELYQ 381 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQ 389 IE L+ KK+D D ++ E++ AQ Sbjct: 382 RIEFLLGKKLDAYPCDEQTVLIMQERVGEAQ 412 >gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens] gi|29427946|sp|Q96GQ7|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName: Full=DEAD box protein 27 gi|55663788|emb|CAH70236.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens] gi|56203613|emb|CAI22427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens] gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens] gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo sapiens] gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens] gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens] gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct] Length = 796 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577 Query: 360 IEK 362 I K Sbjct: 578 IVK 580 >gi|17555296|ref|NP_499069.1| hypothetical protein T26G10.1 [Caenorhabditis elegans] gi|465975|sp|P34580|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1 gi|3880293|emb|CAA82362.1| C. elegans protein T26G10.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 489 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/412 (33%), Positives = 234/412 (56%), Gaps = 9/412 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA+LG+S + A G++KP+ IQ +P LQ DV G+A+TG+GKT +F +P+L + Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQS 105 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ +A L+L PTRELA Q+ FE G L A+++GG+ AQ L R Sbjct: 106 LLDHPQAFF----CLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALAR 161 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR++DH K + ++ L++DEADR+L+M F + I ++P R+T Sbjct: 162 RPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRT 221 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++ K+ L++P R+ V++ T + ++ ++ +Y K+ L+ L Sbjct: 222 YLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKY-KETYLV--YLL 278 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + I+FC + + L + G +HG + Q R+ L+ FK +++V Sbjct: 279 NEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARGLDIP V V N+D+P+++++Y+HR+GRT RAGR G A T+V + D++ I Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKI 398 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 E + KK+D + + +E+ A N + + +K +R++N Sbjct: 399 EANLGKKLDEYKCVENEVMVLVERTQEATENARIEMKEMDEKKKSGKKRRQN 450 >gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371] gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371] Length = 474 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 218/369 (59%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 51 FKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK + L+L PTRELA Q+ + FE G ++ A+++GG+ +Q+ L + Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + N++ LV+DEADR+LD+ F P + I ++P R+T Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT++ +++ + L NP R+ +++ T T+ ++ +Y K L+ L Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDIYLVHIL- 284 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + IIF L L GF +HG + Q +R+ L F+ G+ ++ Sbjct: 285 -NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDIL 343 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP V V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++ Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQR 403 Query: 360 IEKLIEKKV 368 IE + K++ Sbjct: 404 IEAALGKQL 412 >gi|308188835|ref|YP_003932966.1| ATP-dependent RNA helicase [Pantoea vagans C9-1] gi|308059345|gb|ADO11517.1| putative ATP-dependent RNA helicase [Pantoea vagans C9-1] Length = 430 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 217/373 (58%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +P L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALDSKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +GR +V PR LIL PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAAEGR-QVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE+G D+L+ T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLEQGVDILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPPA 189 Query: 178 RQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 Q ++LFSAT++ +++++ + + + +EV T I+ Y +K LL Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ I+F N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 248 QTLLE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 VDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ +IE+ I + Sbjct: 367 NLPSIEEYIGHSI 379 >gi|304398130|ref|ZP_07380005.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] gi|304354416|gb|EFM18788.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] Length = 430 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 217/373 (58%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +P L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALDTKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +GR +V PR LIL PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAAEGR-QVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE+G D+L+ T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLEQGVDILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPPA 189 Query: 178 RQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 Q ++LFSAT++ +++++ + + + +EV T I+ Y +K LL Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELF--YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 248 QTLLE-EEWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 VDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ +IE+ I + Sbjct: 367 NLPSIEEYIGHSI 379 >gi|271502412|ref|YP_003335438.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii Ech586] gi|270345967|gb|ACZ78732.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586] Length = 428 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 215/369 (58%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F+D L P+V+ A+ + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR LI+ PTRELA Q+ + E K L + L GG ++ Q K Sbjct: 71 LLTHPAPAERQTNQPRALIMAPTRELAVQIHADAEALAKATGLRLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + M I+++V+DEADRM D+GFI I+ + +P T Sbjct: 131 LEDGVDILIGTTGRLIDYTKQNHIHMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F +G+ Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGS 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGASGVSISLACEEYAL 366 Query: 356 HIDAIEKLI 364 ++ AIE I Sbjct: 367 NLPAIEDYI 375 >gi|229513487|ref|ZP_04402951.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21] gi|229349364|gb|EEO14320.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21] Length = 439 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 136/351 (38%), Positives = 215/351 (61%), Gaps = 7/351 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ TPIQ +++P +L+ DV G +TG+GKTA+F L +L+ L R RV+ L+L Sbjct: 2 GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ---ALVLC 58 Query: 80 PTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + G+ +N+ V L GG+P Q LE GA +L+ TPGRILDH + Sbjct: 59 PTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILDHLS 118 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + ++ ++ + LV+DEADRML+MGF ++ I + RQTLLFSAT +++++++ Sbjct: 119 KDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAAAERQTLLFSATYPASIEQIAQSV 178 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 +N I+V T+ +I F ++ AL LL Q T + ++FCN K+ V Sbjct: 179 TRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHHQPT--SSVVFCNTKREV 235 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 N+ +L + GFSV +HG+++QR R + L F +I ++VA+D+AARGLD+ ++ VF Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 N+D+ E ++HRIGRTGRAG G AF+ + + + I++ ++ ++ Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIE 346 >gi|229524545|ref|ZP_04413950.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis VL426] gi|229338126|gb|EEO03143.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis VL426] Length = 439 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 137/351 (39%), Positives = 216/351 (61%), Gaps = 7/351 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ TPIQ +++P +L+ DV G +TG+GKTA+F L +L+ L R RV+ L+L Sbjct: 2 GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ---ALVLC 58 Query: 80 PTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + G+ +N+ V L GG+P Q LE GA +L+ TPGRILDH + Sbjct: 59 PTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILDHLS 118 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + ++ ++ + LV+DEADRML+MGF ++ I + P RQTLLFSAT +++++++ Sbjct: 119 KDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPASIEQIAQSV 178 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 +N I+V T+ +I F ++ AL LL Q T + ++FCN K+ V Sbjct: 179 TRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHHQPT--SSVVFCNTKREV 235 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 N+ +L + GFSV +HG+++QR R + L F +I ++VA+D+AARGLD+ ++ VF Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 N+D+ E ++HRIGRTGRAG G AF+ + + + I++ ++ ++ Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIE 346 >gi|221481559|gb|EEE19941.1| DEAD-box helicase family protein [Toxoplasma gondii GT1] Length = 1158 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 213/381 (55%), Gaps = 35/381 (9%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +A+ L +++ AV A Y +PTPIQ++ IP+ L++ D+ GIA+TG+GKTA+FVLPMLT Sbjct: 739 WAESALPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTY 798 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + KG + P LIL P+RELA Q+ + +K+ ++GG E Q Sbjct: 799 V-KGLPPLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQA 857 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L RGA+++I TPGR+ D + ++N +V+DEADRM+DMGF + I +P Sbjct: 858 FQLRRGAEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPT 917 Query: 177 T------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212 + R T +FSATM +++++ +L+ P I + P + Sbjct: 918 SNLKSNDEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGA 977 Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272 IE + ++K LQ +L+ + ++F NQKK+ L L K G+S Sbjct: 978 GKRAIEQRV--EFVPEARKKQRLQDVLE--NATPPVMVFVNQKKSADALAKVLGKLGYSA 1033 Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332 C++HG Q +R LS+FKEG+ ++VA+D+A RG+D+ V V NFD+P E Y HR Sbjct: 1034 CSLHGGKAQENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHR 1093 Query: 333 IGRTGRAGRHGKAFTLVAKED 353 IGRTGRAGR G A + + +ED Sbjct: 1094 IGRTGRAGRKGLAISFLTEED 1114 >gi|188533127|ref|YP_001906924.1| ATP-dependent RNA helicase SrmB [Erwinia tasmaniensis Et1/99] gi|188028169|emb|CAO96027.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99] Length = 442 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 134/353 (37%), Positives = 205/353 (58%), Gaps = 4/353 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ ++ + G+ +PT IQ + IP L+ DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD + K+ +L +A + GG+ F + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV++ T GR+L + +E L++DEADRMLDMGF I+ I++ + +QTL Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTL 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ E ++ +E L P IE + + I+ + K ALL LL+ Sbjct: 186 LFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRA-DDIKHKTALLLHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + ++F +++ V +C L + G + + G + Q R + + +G + ++V Sbjct: 245 -QPEVTRAVVFVRKRERVHEVCGWLREAGINTSYLEGELVQAKRNEAIKRVVDGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+AARG+DI DV HVFNFD+P ++ Y+HRIGRTGRAG+ G A +LV D Sbjct: 304 ATDIAARGIDIDDVSHVFNFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHD 356 >gi|237843843|ref|XP_002371219.1| DEAD-box ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49] gi|211968883|gb|EEB04079.1| DEAD-box ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49] Length = 1158 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 213/381 (55%), Gaps = 35/381 (9%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +A+ L +++ AV A Y +PTPIQ++ IP+ L++ D+ GIA+TG+GKTA+FVLPMLT Sbjct: 739 WAESALPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTY 798 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + KG + P LIL P+RELA Q+ + +K+ ++GG E Q Sbjct: 799 V-KGLPPLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQA 857 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L RGA+++I TPGR+ D + ++N +V+DEADRM+DMGF + I +P Sbjct: 858 FQLRRGAEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPT 917 Query: 177 T------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212 + R T +FSATM +++++ +L+ P I + P + Sbjct: 918 SNLKSNDEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGA 977 Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272 IE + ++K LQ +L+ + ++F NQKK+ L L K G+S Sbjct: 978 GKRAIEQRV--EFVPEARKKQRLQDVLE--NATPPVMVFVNQKKSADALAKVLGKLGYSA 1033 Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332 C++HG Q +R LS+FKEG+ ++VA+D+A RG+D+ V V NFD+P E Y HR Sbjct: 1034 CSLHGGKAQENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHR 1093 Query: 333 IGRTGRAGRHGKAFTLVAKED 353 IGRTGRAGR G A + + +ED Sbjct: 1094 IGRTGRAGRKGLAISFLTEED 1114 >gi|149036001|gb|EDL90667.1| rCG38846 [Rattus norvegicus] Length = 497 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 155/416 (37%), Positives = 232/416 (55%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L LS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ Q +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH M I LV+DEADR+L+ G F ++ I S VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E T E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q+ QD +++ IIF N K LC L K F A+H + Q+ R L+ FK T Sbjct: 239 VQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSST 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I++++ L + + + L ++++ R+ I +++ FD +K+ Sbjct: 359 LLHAIEEEIKQQLAELAVEEAQVLQILTQVNV-----VRRECEIKLEASHFDEKKE 409 >gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517] gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517] Length = 474 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 218/369 (59%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 51 FKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK + L+L PTRELA Q+ + FE G ++ A+++GG+ +Q+ L + Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + N++ LV+DEADR+LD+ F P + I ++P R+T Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT++ +++ + L NP R+ +++ T T+ ++ +Y K L+ L Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDIYLVHIL- 284 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + IIF L L GF +HG + Q +R+ L F+ G+ ++ Sbjct: 285 -NEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDIL 343 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP V V NFD+P+ ++ YIHR+GRT RAG+ G+A ++V + +++ Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQR 403 Query: 360 IEKLIEKKV 368 IE + K++ Sbjct: 404 IEAALGKQL 412 >gi|145640383|ref|ZP_01795967.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021] gi|145274969|gb|EDK14831.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21] Length = 402 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 207/362 (57%), Gaps = 4/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EK 362 ++ Sbjct: 364 KR 365 >gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74660562|sp|Q6CT85|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3 gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis] Length = 487 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 149/389 (38%), Positives = 224/389 (57%), Gaps = 14/389 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 +L L P+++ A + Y KPTPIQ K IP L+ D+ G+AQTG+GKTA+F +P+L L Sbjct: 71 ELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 + IL PTRELA Q+ + F+ G + ++GG+ Q + L R Sbjct: 131 HDQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187 Query: 125 VLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQTLL 182 ++I TPGR++DH K + ++ LV+DEADR+LDM F P + I +++P R T L Sbjct: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATMT ++ K+ L NP + V+ T +T+ + K L LL ++ Sbjct: 248 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL--KNTFLIYLL-NE 304 Query: 243 DTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 K+ I+F K N + NLC+ LE FS A+HG+++Q R L FK G ++ Sbjct: 305 FIGKSTIVFTRTKANAERISNLCNLLE---FSATALHGDLNQNQRTGALDLFKAGKRSIL 361 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV++ D++ I Sbjct: 362 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 421 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 IE ++ KK+ N D ++ + +D A Sbjct: 422 IEDVLGKKLPKENVDKDAILALRDSVDKA 450 >gi|187926489|ref|YP_001892834.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J] gi|241665976|ref|YP_002984335.1| ATP-dependent RNA helicase DbpA [Ralstonia pickettii 12D] gi|187728243|gb|ACD29407.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J] gi|240868003|gb|ACS65663.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D] Length = 465 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 223/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P V+ + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 10 FSTLALAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAR 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ V+ ++L PTRELA QVA + + N+ V L GG P Q LE Sbjct: 70 LDARSFDVQ---AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 127 GAHVIVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPADRQTL 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ L+NPK +++ ++ + + T +Q + + QLL+ Sbjct: 187 LFSATYPEGIAKLSQRILRNPKEVKLEERHDDSKIRQRFYEVTDSQ---RLHAVGQLLKH 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + FCN K+ +L L QG A+HG ++QR R ++L F + ++VA Sbjct: 244 YRPVST-LAFCNTKQQCRDLLDVLRAQGIHALALHGELEQRERDQVLIQFANRSCSVLVA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA +G A +L + +++ + IE Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADENGWALSLASMDEMGRVGNIE 362 Query: 362 KLIEKKVDWL------NGDLSSLNPPLEKIDI 387 + + ++V+W G+ + L PP+E + I Sbjct: 363 EAMGREVEWHQLDELDTGNDAPLLPPMETLQI 394 >gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia] gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia] Length = 519 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 217/369 (58%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 65 LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 124 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 125 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 181 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 182 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 241 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P +IEV+ T E ++ ++ +Y K L +L Sbjct: 242 TFLFSATMTKKVKKLQRASLKDPVKIEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 299 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 300 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSIL 358 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA TLV++ DI+ Sbjct: 359 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 418 Query: 360 IEKLIEKKV 368 IE L+ K++ Sbjct: 419 IEHLLGKQL 427 >gi|330977878|gb|EGH77781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 445 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 214/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ R +IL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+ N G L + ++E+LV+DEADRMLDMGF ++ + QT+ Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L++P+ ++VN+ S A H + K+ L L Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T + IIF N + L L + +HG+ DQ+ R + K+G ++MV Sbjct: 239 ANETYQKAIIFTNTRAMADRLYCRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P ++Y+HR+GRTGRAG G A +L+ D + ++ Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358 Query: 361 EKLIEKKVD 369 E+ +++ + Sbjct: 359 ERYLKQSFE 367 >gi|315434409|gb|AAK73934.2|AC025726_27 Hypothetical protein Y71G12B.8 [Caenorhabditis elegans] Length = 739 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 140/361 (38%), Positives = 203/361 (56%), Gaps = 1/361 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + LS +++ A AGY PTPIQ IP+ L D+C A TGTGKTA+FVLP+L Sbjct: 148 VSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R L+L PTRELA QV F K L V L GG+ +AQ L Sbjct: 208 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 267 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DV++ TPGR++DH N ++NIE+LV+DEADRML+ F + + L RQ Sbjct: 268 SGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQ 327 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATMT+E+ +++ LQ P +I +N + TA + F+ A + L Sbjct: 328 TLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAAL 387 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ N I+F KK+ + L G V + ++ Q R++ LS FK+ I ++ Sbjct: 388 VTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVL 447 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 V++DLA+RGLDI V V N ++P + YIHR+GRT RAG+ G++ +LV +++ K + Sbjct: 448 VSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKE 507 Query: 360 I 360 I Sbjct: 508 I 508 >gi|300783976|ref|YP_003764267.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] gi|299793490|gb|ADJ43865.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] Length = 534 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 209/366 (57%), Gaps = 12/366 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGL ++ A+ +AG P PIQ TIP L DV G AQTG+GKT +F L ML Sbjct: 46 FAELGLPEPLLRALSEAGINSPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAMLAR 105 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L G+AR + PR LIL PTRELA QVAD+ K+ L +GG+ F Q L RG Sbjct: 106 LADGKARPKRPRALILVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMAFARQADALSRG 165 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+LI TPGR+ DH +G + + + +DEAD+M DMGF+P ++ I L P Q LL Sbjct: 166 VDLLIATPGRLSDHVRQGTAHLGDCNFIALDEADQMADMGFMPQVREIMDLTPQGGQRLL 225 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++ ++ + +L +P V +++ T++H + Q +Q + +Q Sbjct: 226 FSATLDGDVNRLVKQYLSDPVTHSVAPSTASVTTMDHHVLQVSHQD-------KQDVITQ 278 Query: 243 DTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++G I+F K +V L L +QG + A+HG Q R ++L++FKEG ++V Sbjct: 279 IGARDGRTIMFVRTKHHVDRLAERLREQGVNAAALHGGKTQGQRNRVLADFKEGHTPVLV 338 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+ + D+ V + D ++Y+HR GRT RAG G T VA D + + + Sbjct: 339 ATDVAARGIHVDDISLVLHVDPAADHKDYLHRAGRTARAGASGVVVT-VATHDQRRM--V 395 Query: 361 EKLIEK 366 +L ++ Sbjct: 396 RRLTDR 401 >gi|229507384|ref|ZP_04396889.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286] gi|229509692|ref|ZP_04399173.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33] gi|229516817|ref|ZP_04406263.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9] gi|229521626|ref|ZP_04411044.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80] gi|229527506|ref|ZP_04416898.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)] gi|229606890|ref|YP_002877538.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236] gi|229335138|gb|EEO00623.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)] gi|229341220|gb|EEO06224.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80] gi|229345880|gb|EEO10852.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9] gi|229353166|gb|EEO18105.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33] gi|229354889|gb|EEO19810.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286] gi|229369545|gb|ACQ59968.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236] Length = 439 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 137/351 (39%), Positives = 216/351 (61%), Gaps = 7/351 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ TPIQ +++P +L+ DV G +TG+GKTA+F L +L+ L R RV+ L+L Sbjct: 2 GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ---ALVLC 58 Query: 80 PTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + G+ +N+ V L GG+P Q LE GA +L+ TPGRILDH + Sbjct: 59 PTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILDHLS 118 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + ++ ++ + LV+DEADRML+MGF ++ I + P RQTLLFSAT +++++++ Sbjct: 119 KDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPASIEQIAQSV 178 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 +N I+V T+ +I F ++ AL LL Q T + ++FCN K+ V Sbjct: 179 TRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHHQPT--SSVVFCNTKREV 235 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 N+ +L + GFSV +HG+++QR R + L F +I ++VA+D+AARGLD+ ++ VF Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 N+D+ E ++HRIGRTGRAG G AF+ + + + I++ ++ ++ Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIE 346 >gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Meleagris gallopavo] Length = 447 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 215/359 (59%), Gaps = 8/359 (2%) Query: 12 VVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARV 70 V+C D G+ PT IQ++ IP+ LQ D+ G+A+TG+GKT +F LP+L L R+ Sbjct: 29 VLCEACDQLGWKIPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQRL 88 Query: 71 RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTP 130 L+L PTRELA Q+++ FE G + + A+++GGI +Q+ L + ++I TP Sbjct: 89 F---ALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATP 145 Query: 131 GRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189 GR++DH K + ++ LV+DEADR+L+M F + I ++P R+T LFSATMT Sbjct: 146 GRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 205 Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249 ++QK+ L+NP + V++ T E ++ ++ +++ K + L +L ++ + + Sbjct: 206 QVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKF--KDSYLVYIL-NELAGNSFM 262 Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309 +FC+ N L GF+ +HG + Q R+ L+ FK +++A+D+A+RGL Sbjct: 263 VFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRGL 322 Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DIP V V NFD+P +++YIHR+GRT RAGR GK+ T V + D++ IE LI KK+ Sbjct: 323 DIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKKL 381 >gi|6735368|emb|CAB68189.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] Length = 603 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 214/385 (55%), Gaps = 22/385 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD+ L + + YV+PTP+Q IP++L D+ AQTG+GKTA+F P+++ Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISG 212 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + K + +R P +IL PTRELA Q+ D +K+ + V + GG P Q Sbjct: 213 IMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQ 272 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG D+L+ TPGR+ D R ++ M I L +DEADRMLDMGF P I+ I + Sbjct: 273 LRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD 332 Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT ++Q+++ +F+ N + V S+ + I + Q S K Sbjct: 333 MPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQ--RVEFVQESDK 390 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 + L LL +Q ++ K+ L + L F +IHG+ Q+ R L +F Sbjct: 391 RSHLMDLLHAQRETQD-----KTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSF 445 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G A + Sbjct: 446 KTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNE 505 Query: 352 EDIKHIDAIEKLIEKK----VDWLN 372 + + ++ +L+++ +WL Sbjct: 506 NNAQLARSLAELMQEANQEVPEWLT 530 >gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster] gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster] Length = 507 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 61 LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 120 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 121 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 177 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 178 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 237 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T E ++ ++ +Y K L +L Sbjct: 238 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 295 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 296 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 354 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA TLV++ DI+ Sbjct: 355 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 414 Query: 360 IEKLIEKKV 368 IE L+ K++ Sbjct: 415 IEHLLGKQL 423 >gi|283786193|ref|YP_003366058.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168] gi|282949647|emb|CBG89266.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168] Length = 444 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 140/354 (39%), Positives = 207/354 (58%), Gaps = 6/354 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD+ + K+ +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E L++DEADRMLDMGF I++I + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239 LFSAT+ E ++ +E L++P +EV+ ST E + H + Y K LL+ LL Sbjct: 186 LFSATLEGEAIKDFAERLLEDP--VEVSASPSTRERKKIHQWYYRADNYEHKFELLKHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D + I+F +++ V L L G S C + G + Q R + + +G + ++ Sbjct: 244 KQDDATRT-IVFVRKRERVHELAEQLRLAGISNCYLEGEMAQIKRNEGIKRLTDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARG+DIPDV HV NFD+P + Y+HRIGRTGRAGR G A +LV D Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHD 356 >gi|260912300|ref|ZP_05918851.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str. F0295] gi|260633601|gb|EEX51740.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str. F0295] Length = 447 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 220/378 (58%), Gaps = 18/378 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + TPIQ IP +L+ D+ G+AQTGTGKTA+++LP++ Sbjct: 1 MTFEELDLNDNVLDALYDMRFETCTPIQEHCIPQILEGKDILGVAQTGTGKTAAYLLPIM 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI----GGIPFEAQN 116 ++L+ G +I+ PTRELA Q+ + +G + +L I G ++ + Sbjct: 61 SMLDDGGFPHDAINCIIMSPTRELAQQIDQAMQGFGYYLDSVSSLAIYGGNDGNRYDQEI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L GAD++I TPGR + H G + ++ + V+DEADRMLDMGF I I +P Sbjct: 121 KSLRLGADIIIATPGRFISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 T QT++FSATM +++++++ L+NP I++ S AE I AQ + C Q Sbjct: 181 TCQTIMFSATMPPKIEQLAKTLLKNPVEIKLAV-SKPAEKI--------AQKAYLCYEPQ 231 Query: 237 QLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 +L QD K G IIF +K+ V + +L + + +H ++ Q R +++ F Sbjct: 232 KLKVLQDIFKAGSLNRVIIFSGKKQKVKEINRALVRMKVNSDEMHSDLSQEERDRVMFKF 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K G ++VA+D+ +RG+DI D+ V N+DVP+ E+Y+HRIGRT RA R G A TL++ Sbjct: 292 KSGATDVLVATDILSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARAERDGVAITLISD 351 Query: 352 EDIKHIDAIEKLIEKKVD 369 +D+ + IE+ +EK ++ Sbjct: 352 QDVYYFQQIERFLEKDIE 369 >gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500] gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500] Length = 543 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 208/373 (55%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 118 FDEAGFPNYVLSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 177 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P LIL PTRELA Q+ K+G++ + + GG+P Q Sbjct: 178 INAQPLLSPGDG----PIVLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQI 233 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 234 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 293 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E+++++ +FL + ++ + + +A V + + K+ +++ Sbjct: 294 DRQTCMWSATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 353 Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + D KN +IF K+ ++ L + G+ +IHG+ Q R +L FK G Sbjct: 354 HLEKIMDDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGK 413 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A T ++ K Sbjct: 414 SPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 473 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 474 QARDLVTILSEAK 486 >gi|152975569|ref|YP_001375086.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024321|gb|ABS22091.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH 391-98] Length = 434 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 140/363 (38%), Positives = 225/363 (61%), Gaps = 7/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+S + + G + TPIQ K IP+++ DV G A+TGTGKT +FVLP+L Sbjct: 7 FLELGMSETFQHTLRENGIAEATPIQEKAIPVIMDGKDVIGQAKTGTGKTLAFVLPILEN 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121 ++ + ++ LI+ PTRELA Q+ +K ++ V + GG E Q KKL+ Sbjct: 67 IDPNASDIQ---ALIVAPTRELALQITTEIKKMLVHKQDIHVLAIYGGQDVEQQMKKLKG 123 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR+LDH R ++++N+ ++V+DEAD+ML GF+ I++I P +QT+ Sbjct: 124 NTHIVVATPGRLLDHLRRETIVLSNVSMVVLDEADQMLHFGFLYDIEHILEETPENKQTM 183 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM +++K+++ +++ P+ I++ + T E I+ + T +K+ AL + + Sbjct: 184 LFSATMPKDIKKLAKRYMKEPQVIQIQSAEVTVENIKQRVIET-TDRAKQDALRYVMERD 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q + +IFC K+ V L +L+ G++ +HG++ Q R +++ NF+E IQ ++A Sbjct: 243 QPFL--AVIFCRTKRRVTKLFTALKGYGYNCDELHGDLSQAKRERVMKNFREAKIQYLIA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ V HVFN+D+P E+YIHRIGRTGRAG G A T VA +D ++ IE Sbjct: 301 TDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGTGLAITFVAPKDKMYLKEIE 360 Query: 362 KLI 364 K I Sbjct: 361 KYI 363 >gi|159465205|ref|XP_001690813.1| predicted protein [Chlamydomonas reinhardtii] gi|158279499|gb|EDP05259.1| predicted protein [Chlamydomonas reinhardtii] Length = 446 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 215/369 (58%), Gaps = 9/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F LG+ ++ A G+ P+ IQ + IP +L DV G+AQTG+GKT +F LP+L Sbjct: 19 FEKLGICTQLAEAAAGLGWKAPSHIQEQAIPHLLAGQDVIGLAQTGSGKTGAFSLPILQA 78 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++K + LIL PTRELA Q+A+ E G + +L+GGI AQ L + Sbjct: 79 LMDKPQEHF----ALILSPTRELAIQIAEQVEALGSGIGVKSCVLVGGIDMMAQAIALAK 134 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 VL+ TPGR++DH + K + ++ LV+DEAD++LDM F I I ++P R+T Sbjct: 135 RPHVLVGTPGRVVDHLSNTKGFSLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRERRT 194 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT+++QK+ L P +IEV ST +T+ +V A+Y K C L + Sbjct: 195 QLFSATMTNKVQKLQRACLDKPVKIEVAHKYSTVDTLRQQYVFIPAKY-KDCYLAYVI-- 251 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + +IF ++ + L GF IHG++ Q R+ L+ FK G ++V Sbjct: 252 NELSGSTFMIFTRTCESTRRIALLLRNLGFGAVPIHGHMSQPKRLGALNKFKSGERNILV 311 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFDVP +++Y+HR+GRT RAGR G++ T+V + D++ I Sbjct: 312 ATDVASRGLDIPSVDVVINFDVPQNSKDYVHRVGRTARAGRSGRSVTIVTQYDVELFQKI 371 Query: 361 EKLIEKKVD 369 E L K++ Sbjct: 372 EHLTGVKME 380 >gi|288942044|ref|YP_003444284.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium vinosum DSM 180] gi|288897416|gb|ADC63252.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM 180] Length = 454 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 3/363 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ L ++ + + GY PTP+Q + IPL + D+ A TG+GKTA+F+LP++ Sbjct: 5 FSEFLLPDALMRGLANEGYTTPTPVQAQVIPLAMDGVDLLVSAATGSGKTAAFLLPIMQR 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 R LIL PTRELA Q+ +F + G LT ++ GG Q L + Sbjct: 65 FIDVPRHDGSTRALILVPTRELARQIHIHFMRLGSYTRLTSGVITGGESKAHQIATLRKN 124 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++L+ TPGR+L+ G+ + ++E LV+DEADRMLDMGF + I RQ+LL Sbjct: 125 PEILVATPGRLLEFLETGQANLRDLEFLVLDEADRMLDMGFADDVLAIIRYSRPERQSLL 184 Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSAT+ L +++E L++P+R++V+ I HC + + K+ LL L Sbjct: 185 FSATLEQRGLSQITERLLRDPQRVDVDPVRQQHPDIAHCMLLSDGLEHKQQQLL--WLLR 242 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +T + +IF N ++ V L + L+ Q V +HG +DQR R +++ G + ++A Sbjct: 243 HETYEKALIFTNTREGAVALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNTLIA 302 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +DLAARG+D+P V VFNFD+P R ++Y+HR GRTGRAG G A +LV + +++I Sbjct: 303 TDLAARGIDVPGVQRVFNFDLPRRGDDYLHRTGRTGRAGEAGVAISLVGPPEWNRMESIA 362 Query: 362 KLI 364 + + Sbjct: 363 RYL 365 >gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255] Length = 493 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 215/369 (58%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F +LGL + A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTASFVLP+L Sbjct: 73 FKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQA 132 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK ++ L+L PTRELA Q++ E G N+ L+GG+ Q+ L + Sbjct: 133 LMEKPQSFF----GLVLAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGK 188 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + +++ LV+DEADR+LDM F P + I ++P R+T Sbjct: 189 KPHIIVATPGRLLDHLENTKGFSLRSLKFLVMDEADRLLDMDFGPILDKILKVLPRERRT 248 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT++ +++ + L NP R+ +++ +T ET++ ++ Y K L LL Sbjct: 249 FLFSATLSSKVESLQRASLSNPARVSISSSKYATVETLQQTYL--LRPYKHKDIYLVYLL 306 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ IIF + L GF +HG + Q +R+ L F+ + +++ Sbjct: 307 H-EFIGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREIL 365 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP V V NFD+P ++ YIHR+GRT RAG+ G A + V + D++ Sbjct: 366 VATDVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQR 425 Query: 360 IEKLIEKKV 368 IE + K++ Sbjct: 426 IEAAMGKEL 434 >gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+] gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+] Length = 490 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 145/376 (38%), Positives = 212/376 (56%), Gaps = 24/376 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + A GY +PT IQ + IPL LQ D+ GIA+TG+GKTA+F LP+L Sbjct: 64 FKDLGIVDSLCEACDRLGYKQPTAIQQEAIPLALQDRDIIGIAETGSGKTAAFALPILQA 123 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+K + L+L PTRELAAQ+A +FE G NL ALL+GG+ Q L + Sbjct: 124 LLDKPQPLF----ALVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAIALGK 179 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR+LDH + K + N+ V+DEADR+LDM F P ++ I +P R+T Sbjct: 180 KPHVVVATPGRLLDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILKFLPRERRT 239 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAET-------IEHCFVATYAQYSKKC 232 LFSATM+ +++ + L++P ++ V+T T T I H TY Y Sbjct: 240 FLFSATMSSKVESLQRASLRDPLKVNVSTSKYQTVSTLVSNYLFIPHIHKDTYFIY---- 295 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L ++ K I+F + L G +HG + Q +R+ LS F+ Sbjct: 296 ------LCNEFAGKTMIVFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALSKFR 349 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT ++VA+D+AARGLDIP+V V N+D+P ++ YIHR+GRT RAG+ G A ++V + Sbjct: 350 AGTRNILVATDVAARGLDIPNVDCVINYDLPQDSKTYIHRVGRTARAGKSGHALSIVTQY 409 Query: 353 DIKHIDAIEKLIEKKV 368 D++ IE + K+ Sbjct: 410 DLEIWTRIEAALGTKL 425 >gi|21223535|ref|NP_629314.1| helicase [Streptomyces coelicolor A3(2)] gi|9714451|emb|CAC01367.1| putative helicase [Streptomyces coelicolor A3(2)] Length = 879 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 205/346 (59%), Gaps = 12/346 (3%) Query: 31 TIPLVLQRHDVCGIAQTGTGKTASFVLPML---TI---LEKGRAR----VRMPRTLILEP 80 T+P+ L DV G A+TGTGKT F LP+L T+ +E GRA P+ L++ P Sbjct: 2 TLPVALSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAAPESLTDAPQALVVVP 61 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 TREL QV ++ GK N+ V + GG +E Q + L++G DV++ TPGR+LD + Sbjct: 62 TRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKQGVDVIVGTPGRLLDLAGQN 121 Query: 141 KLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQ 200 KL + +I+ LV+DEAD MLD+GF+P ++ I +++P RQT+LFSATM + ++ ++ Sbjct: 122 KLSLKHIKSLVLDEADEMLDLGFLPDVEKIINMLPARRQTMLFSATMPGAVIGLARRYMS 181 Query: 201 NPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 P I +P T+ + Y A K ++ ++LQ+ D ++FC K+ Sbjct: 182 QPTHISATSPDDEGATVANTKQFIYRAHNMDKPEMVARILQA-DGRGLAMVFCRTKRTAA 240 Query: 260 NLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 +L L+++GF+ A+HG++ Q +R + L F+ G + ++V +D+AARG+D+ V HV N Sbjct: 241 DLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVIN 300 Query: 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 + P + Y+HRIGRTGRAG G A TLV +DI I K ++ Sbjct: 301 YQSPEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKALD 346 >gi|226468232|emb|CAX69793.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Schistosoma japonicum] Length = 606 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 133/382 (34%), Positives = 214/382 (56%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +A++ ++ ++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKTA+F++P+L Sbjct: 178 WAEMNVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNW 237 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +++ R+ P +I+ PTRELA Q+ + K+G+ + LIGG+ E Q Sbjct: 238 IQRLPKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQA 297 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL GA+++I TPGR+ D +++N +V+DEAD+M+DMGF P + NI + +P Sbjct: 298 LKLRMGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPV 357 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++++ ++L+ P + + + Sbjct: 358 TNEKPDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAG 417 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E +E V ++ K+ LL+ L D F NQKK L LEK G+S Sbjct: 418 KPTERVEQ-IVYMVSEQEKRRKLLEILAAGLDP--TCYYFVNQKKGADVLAKGLEKLGYS 474 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 +HG Q R L++ K G +++VA+D+A RG+DI DV V N+D+ + Y+H Sbjct: 475 AVVLHGGKGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVH 534 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG+ G A +L+ KED Sbjct: 535 RIGRTGRAGKSGIAISLLTKED 556 >gi|224086197|ref|XP_002193200.1| PREDICTED: DEAD box polypeptide 42 protein [Taeniopygia guttata] Length = 923 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 139/395 (35%), Positives = 223/395 (56%), Gaps = 22/395 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + V + K L Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQ-IVEIFPSGPSKWNWLT 489 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L + + ++F +K N L ++L+++ ++ +HG++DQ R K++S FK+ I Sbjct: 490 RRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNF 609 Query: 354 ----IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 +++++ + + K++ DL+ NP K Sbjct: 610 AGDLVRNLEGANQHVSKELL----DLAMQNPWFRK 640 >gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens] Length = 674 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 205/339 (60%), Gaps = 11/339 (3%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRARVRMPR 74 Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML LE G P Sbjct: 9 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG----PI 64 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 +I+ PTREL Q+ +++GK YNL + GG Q K L+ GA++++CTPGR++ Sbjct: 65 AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLI 124 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 DH + + + LV DEADRM DMGF +++I S V RQTLLFSAT +++K+ Sbjct: 125 DHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKL 184 Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254 + + L +P R+ E + ++ SK L ++L++ + + ++F + Sbjct: 185 ARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS-GSVLLFVTK 243 Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 K N L ++L+++G ++ +HG++DQ R K++S+FK+ I ++VA+D+AARGLDIP + Sbjct: 244 KANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 303 Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 304 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 342 >gi|167533855|ref|XP_001748606.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772847|gb|EDQ86493.1| predicted protein [Monosiga brevicollis MX1] Length = 698 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 214/385 (55%), Gaps = 37/385 (9%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + GL+P+++ A+ G+ PTPIQ IP+ L D+ G+A+TG+GKT +FVLP+L Sbjct: 275 WDEAGLNPEMLKAIQKLGFENPTPIQRAAIPIGLNNRDIIGVAETGSGKTLAFVLPLLNW 334 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + VR P +IL PTR+LA Q+ D K+ + + + +IGG E Q+ Sbjct: 335 IISLPQLVREQDIDNGPYAVILAPTRDLAQQIEDEANKFARPLGVRLVSVIGGHSREDQS 394 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 KL +G +V+I TPGR++D + +++N +V+DEADRMLDMGF P +Q I +P Sbjct: 395 FKLNQGCEVVIATPGRLIDVLDNHYMVLNQCSYIVMDEADRMLDMGFEPEVQRILEYIPV 454 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 + RQT+LF+ATM +++++ +L+ P + + Sbjct: 455 SNMKPDTDEAEDQHLLAENSRNKAKYRQTVLFTATMPTSVERLARTYLRRPATVNIGVAG 514 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGF 270 A+ +E V ++ K+ L++ L D+M+ IIF NQKK L SLEK G+ Sbjct: 515 RAADRVEQR-VLMLSEKQKRNELVKLL----DSMEPPVIIFVNQKKGADVLTKSLEKMGY 569 Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYI 330 A+HG Q R + LS K+ T ++VA+D+A RG+DI + V N+D+ E+Y Sbjct: 570 RASALHGGKSQDLRERALSQLKDKTKDILVATDVAGRGIDIKGISMVINYDMAKNIEDYT 629 Query: 331 HRIGRTGRAGRHGKAFTLVAKEDIK 355 HRIGRTGRAG G A T + +ED K Sbjct: 630 HRIGRTGRAGSSGVAVTFLTEEDSK 654 >gi|311747002|ref|ZP_07720787.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp. PR1] gi|126578701|gb|EAZ82865.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp. PR1] Length = 418 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 216/368 (58%), Gaps = 12/368 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF+ + + G+ +PTPIQ K IP++L D+ AQTGTGKTA+F+LP+L Sbjct: 1 MDFSSFNFETSLQEGLDAMGFEQPTPIQEKAIPVILDNKDLIACAQTGTGKTAAFILPVL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQN 116 + K G ++ TL+L PTRELA Q+ + + ++ + GG I +E Q Sbjct: 61 NKISKSGSDKLN---TLVLAPTRELAIQIDQQIQGFSYFLGISSIPIYGGGDGIVWEQQK 117 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K LE GA++++ TPGR++ GK+ ++++E L++DEADRM+DMGF I I + +P Sbjct: 118 KALETGAEIVVATPGRLIALLAGGKMDLSSLEHLILDEADRMMDMGFSDDILKIVNYLPK 177 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT+LFSATM ++++ S L+NP+ I + + A + A Y+ Y + L Sbjct: 178 ERQTILFSATMPSKIRQFSMKILKNPQEISIAIGKTAAGVTQ----AMYSVYDGQKEDLV 233 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + + SQ + IIF + K+ V L L K F V A H +++Q R KI+S FK +I Sbjct: 234 KNILSQKAYEAVIIFASTKEKVKGLYKKLRKD-FEVEAFHSDLEQIEREKIMSGFKNKSI 292 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++++ +D+ +RG+D+ + V NFD P+ E+Y+HR+GRT RA + G+A T V +D Sbjct: 293 KILIGTDIISRGIDVVGIELVINFDTPSDPEDYVHRVGRTARADKEGEAITFVNPKDQYK 352 Query: 357 IDAIEKLI 364 IEKLI Sbjct: 353 FARIEKLI 360 >gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster] Length = 507 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 61 LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 120 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 121 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 177 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 178 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 237 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T E ++ ++ +Y K L +L Sbjct: 238 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 295 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 296 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 354 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA TLV++ DI+ Sbjct: 355 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 414 Query: 360 IEKLIEKKV 368 IE L+ K++ Sbjct: 415 IEHLLGKQL 423 >gi|197364704|ref|YP_002144341.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|226739549|sp|B5BIS9|RHLB_SALPK RecName: Full=ATP-dependent RNA helicase rhlB gi|197096181|emb|CAR61777.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 421 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+VV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + VP Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRVPPAA 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIESYIGHSI 379 >gi|167753303|ref|ZP_02425430.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216] gi|167659234|gb|EDS03364.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216] Length = 476 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 134/375 (35%), Positives = 228/375 (60%), Gaps = 7/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L +V+ + + + TP+Q +TIP++L D+ AQTGTGKTA++ LP+L Sbjct: 1 MRFDELDLEDEVLDGIDAMNFQEMTPVQEQTIPIILDGRDIIACAQTGTGKTAAYTLPLL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP---FEAQNK 117 L + +++I+ PTRELA Q+ F+ + ++ A++ GG ++ Q + Sbjct: 61 NRLLLEGNEKNVVKSVIIVPTRELAQQIDMQFQGFSYYMPVSTAVIYGGGDGRGWDQQKR 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ GADV+I TPGR++ H ++ +++++ L++DEADRMLDMGF I I S +P + Sbjct: 121 GLQMGADVVIATPGRLISHLMNSRVDLSHVDYLILDEADRMLDMGFYDDIMQIVSYMPKS 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL+FSAT+ +++++++ L +P + + S E IE Y +K ++++ Sbjct: 181 RQTLMFSATLPPKIRQMAKQILNDPAEVNIAI-SKPNEAIEQGAYICYE--GQKLGIVRE 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + S + IIF + K+ V L H+L++ V +H ++DQ R +++ +FK ++ Sbjct: 238 MF-SWPSESKTIIFSSSKQKVKELAHTLKRMKLDVAPMHSDLDQEKREQVMLDFKNNKVR 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+G V N+DVP+ E+YIHRIGRT RA G+A T V +E+ Sbjct: 297 ILVATDIVARGIDIEDIGMVINYDVPHDPEDYIHRIGRTARASATGRAVTFVNEEEQGKF 356 Query: 358 DAIEKLIEKKVDWLN 372 IE+ IE+++ L+ Sbjct: 357 HRIEEFIEREIPKLS 371 >gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum] Length = 507 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 145/393 (36%), Positives = 226/393 (57%), Gaps = 18/393 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ P+++ A + G+ KPT IQ ++IP + D+ G+AQTG+GKTA+F +P+L Sbjct: 84 FDQLGMHPQIIEACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAIPILQQ 143 Query: 63 LEKGRARVRMPR---TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L ++ P+ LIL PTRELA Q++ FE G + +L+GG+ Q L Sbjct: 144 L------LQSPQPLFALILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVL 197 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 R +++ TPGR++ H K + ++ LV+DEADR+L M F I I ++P R Sbjct: 198 ARKPHIIVGTPGRVMYHLENTKGFHLKALKFLVMDEADRLLSMDFEEEINKILKVIPKNR 257 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETI--EHCFVATYAQYSKKCALL 235 T LFSATMT ++ K+ + L NP +++V +T ST +T+ ++CF+ Y K L Sbjct: 258 NTYLFSATMTSKVAKLQKASLVNPIKVQVASTKYSTVDTLVQQYCFIP----YQHKDCYL 313 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +L ++ + + I+F L L G I+GN+DQ R+ L+ FK Sbjct: 314 TYIL-NELSGNSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSV 372 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++VA+D+AARGLDIP VG V N+D+P ++ Y+HR+GRT RAG+ G+A TLV + D++ Sbjct: 373 KNILVATDVAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYDVE 432 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 IE + KK++ + SS+ LE ++ A Sbjct: 433 VYQRIEFALSKKLEEFPSESSSVLVFLEAVNEA 465 >gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13] Length = 555 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 133/332 (40%), Positives = 205/332 (61%), Gaps = 6/332 (1%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + T IQ K+IPL++Q D+ G + TGTGKTA+F +P + + + R + LIL Sbjct: 2 GFTEMTEIQEKSIPLMMQGIDLIGRSNTGTGKTAAFGIPAVESISQ--EDPRSVQVLILC 59 Query: 80 PTRELAAQVADNFEKYGKNYNLTVALLI-GGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA Q + +K + + GG + Q L+RGA++++ TPGR++DH N Sbjct: 60 PTRELAMQACEELKKLSRFMPWVRPCAVYGGASMDRQIGDLKRGANIVVGTPGRVMDHMN 119 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 R L + N++ +++DEAD ML+MGF I+ I S VP RQT+LFSATM E+ +++ F Sbjct: 120 RRTLKLQNLKTVILDEADEMLNMGFREDIETILSGVPEERQTVLFSATMPPEIMAITKQF 179 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 ++P I++ T +TIE + T +K L+ LL + + K+ ++FCN K+ V Sbjct: 180 QKDPTVIKIAAKHRTVDTIEQYYYET--AMGRKTDALRLLLLAYEP-KSAMVFCNTKRTV 236 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 L +L +G +HG++ Q R ++++ FK G I ++VA+D+AARG+D+ + VF Sbjct: 237 DELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLVATDVAARGIDVNGIDLVF 296 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 N+D+P E YIHRIGRTGRAG+ G A TLV+ Sbjct: 297 NYDLPQDNEYYIHRIGRTGRAGKSGTALTLVS 328 >gi|293394818|ref|ZP_06639108.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582] gi|291422569|gb|EFE95808.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582] Length = 440 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 156/437 (35%), Positives = 242/437 (55%), Gaps = 16/437 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L +++ A+ D GY +PT IQ IP + DV G A TGTGKTA+F+LP+L Sbjct: 5 NFSELDLDERLINALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + PR LIL PTRELA QVAD + + +L +A + GG+ + + Sbjct: 65 HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 DV++ T GR+L + +E L++DEADRMLDMGF I+ I++ + QT Sbjct: 125 ENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQT 184 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ E +++ +E L+ P +E + + I + K ALL LL Sbjct: 185 LLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKILQWYYRA-DDVKHKTALLVHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q D K+ +IF +++ V L L + G + C + G + Q R + + +G + ++ Sbjct: 244 QQPDVQKS-VIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI D+ HVFNFD+P A+ Y+HRIGRTGRAGR G A +LV D H+ Sbjct: 303 VATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHD--HL-- 358 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDR---RKKNYSSQ 416 L+ K +LN L + ++++ + + K+N P K R ++KN Sbjct: 359 ---LLGKVGRYLNEPLKA--RVIDELRPSTKQPSEKSNGKPSKKVLAKRAESKEKNKEKA 413 Query: 417 KSHIPLKESEKISKLQQ 433 K + ++++ + K +Q Sbjct: 414 KVKVRHRDAKNVGKRRQ 430 >gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565] gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565] Length = 459 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 153/458 (33%), Positives = 243/458 (53%), Gaps = 21/458 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ L LSP + + GY++ TPIQ +++PLVL D+ A+TG+GKTA+F L +L Sbjct: 5 EFSSLNLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLA 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L R V+ L+L PTRELA QVA + + N+ + L GG P Q+ L Sbjct: 65 KLNVNRLEVQ---ALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTPTAPQSATLS 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA + + TPGRIL H +G L ++ ++ LV+DEADRMLDMGF I + S P RQT Sbjct: 122 FGAHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEDINRVISYAPERRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + + ++S +NP + V + + + + Q L Q Sbjct: 182 LLFSATYPEGIAQMSRGVQRNPVEVSVESLHEGSAIEQKLYEVPAGQRLDALTWLLSHYQ 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++FCN K+ ++ L +GFS A++G+++QR R ++L F G+ ++V Sbjct: 242 PSSC----VVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++G V N+++ E ++HRIGRTGRAG+ G A +L + + ++ I Sbjct: 298 ATDVAARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNFI 357 Query: 361 EKLIEK-----KVDWLNGDLSSLNPPLE--KIDIAQHNHARKNNPIPQKS-----TGFDR 408 E+ + +D + D+ + P + ID + R + + + G D Sbjct: 358 EEYQQAPMPLGDLDSIGRDIKPIAPQMVTLSIDAGRKTKVRAGDILGALTGEGGIAGADV 417 Query: 409 RKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446 K S Q S++ +K S + L++ +QE +R Sbjct: 418 GKIQISEQYSYVAVKRSVASAALKR-LQEGKIKGRSYR 454 >gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba] gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba] Length = 522 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 215/370 (58%), Gaps = 9/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 68 LTWKDLGLNETLCQACDELKWRSPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 127 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 128 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 184 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 185 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 244 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T E ++ ++ +Y K L +L Sbjct: 245 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 302 Query: 240 QSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 D N +IFC+ N V L G + +HG + Q R+ L+ FK + Sbjct: 303 N--DLAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSI 360 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA TLV + DI+ Sbjct: 361 LISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQ 420 Query: 359 AIEKLIEKKV 368 IE L+ K++ Sbjct: 421 RIEHLLGKQL 430 >gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427] gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM 5427] Length = 592 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 219/371 (59%), Gaps = 9/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +S ++ A D G+ + TPIQ K IP++LQ +D+ A TGTGKT +F +P + Sbjct: 8 FNQLEVSEDIIRAAHDMGFEETTPIQGKAIPIILQGNDIIAQAPTGTGKTCAFGIPAIES 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNKKLE 120 ++ +V++ LIL PTREL Q + K Y + L GG + Q L+ Sbjct: 68 VDTTNEKVQV---LILCPTRELVIQTTEELSALAK-YKRGIRTLPIYGGQQIDRQIIALK 123 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGRI+DH RG L + +++++++DEAD ML+MGF I I VP RQ Sbjct: 124 KRPQIIVGTPGRIMDHLRRGTLKLEHLKMIILDEADEMLNMGFREDIDVILESVPEERQF 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ + ++ + NP + V T T++ ++ + S K +L +L+ Sbjct: 184 VLFSATLAKAILDIANKYQNNPITVNVVHKELTVPTVKQYYLEV--RDSNKVEVLSRLID 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + K ++FCN K+ V +LC L+ +G+S ++HG++ Q R ++S F+ G I +++ Sbjct: 242 A-NNFKLSVVFCNTKRRVDDLCRDLQARGYSAESLHGDMKQLQRDNVMSRFRNGLIDILI 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV VFN+DVP+ E Y+HRIGRTGRA R G ++T A +++ + I Sbjct: 301 ATDVAARGIDVDDVDAVFNYDVPSDEEYYVHRIGRTGRAQREGVSYTFAAGKELAKLRDI 360 Query: 361 EKLIEKKVDWL 371 ++ + K+ + Sbjct: 361 QRYTKSKIKLI 371 >gi|168043479|ref|XP_001774212.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674480|gb|EDQ60988.1| predicted protein [Physcomitrella patens subsp. patens] Length = 584 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 143/396 (36%), Positives = 217/396 (54%), Gaps = 22/396 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + Y KPTP+Q IP+ L D+ AQTG+GKTA+F P++ Sbjct: 138 FAEIDLGAALNENIRRCKYTKPTPVQRHAIPISLNGRDLMACAQTGSGKTAAFCFPIIAG 197 Query: 63 LEK----GR---ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + GR R +P LIL PTREL +Q++D +K+ + V + GG P Q Sbjct: 198 IMRNTPPGRPRGGRKALPLALILSPTRELTSQISDEAKKFAYQTGIRVVVCYGGAPVHNQ 257 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG D+L+ TPGR+ D R ++ ++ + L +DEADRMLDMGF P I+ I + Sbjct: 258 LRELERGVDILVATPGRLSDLLERARVSLSMVRYLTLDEADRMLDMGFEPQIRRIVEQMD 317 Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT E+Q+++ +FL N + V S+ E I Y Q + K Sbjct: 318 MPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQ--RVEYVQDADK 375 Query: 232 CALLQQLLQSQDTMKN------GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGN---IDQR 282 ++L L+ +Q + ++F KK L L + GF IHG+ + Sbjct: 376 RSMLMDLIHAQSALAPPGQTSLTLVFVETKKGADALEDWLCRMGFPATTIHGDRKVFPTQ 435 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R L +F+ G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ Sbjct: 436 EREHALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 495 Query: 343 GKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 G A ++D ++ +L+ + + G L++ Sbjct: 496 GVATAFFNEKDQSLARSLTELMTESSQEVPGWLTNF 531 >gi|325103156|ref|YP_004272810.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] gi|324972004|gb|ADY50988.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] Length = 411 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 220/375 (58%), Gaps = 11/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F + P++ + G+ K TPIQ +TIPLVLQ D+ AQTGTGKTAS++LP+L Sbjct: 1 MNFEEFNFVPELQEGLDSMGFSKATPIQEQTIPLVLQNKDIIACAQTGTGKTASYLLPVL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQN 116 I +K ++ TLIL PTRELA Q+ T + GG + +E Q Sbjct: 61 NKIYQKQTEKIN---TLILVPTRELALQIDQQIMGLAYFTQATSIAVYGGGDGVDYEQQK 117 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L G ++++ TPGRI+ H GK+ +++E L++DEADRMLDMGF I I S +P Sbjct: 118 RSLREGVNIIVATPGRIIAHLTSGKIKFDSLEHLILDEADRMLDMGFYDDIVRIISYLPQ 177 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSATM ++ +++ L++P + + S +E I +A A ++K LL Sbjct: 178 KRQNLLFSATMPPRIRGLAKKILKHPAEVNIAI-SKPSEGINQ--LAYMAFDNQKGRLLM 234 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L+ K+ IIF ++K+ V ++ L K+G A H +++Q R +I++ FK G + Sbjct: 235 SILKD-GGFKSIIIFASKKETVKSINSELNKKGIKSEAFHSDLEQHQREEIMNRFKGGQL 293 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++V +D+ +RG+D+ + V N+DVP E+YIHRIGRT RA G A T + +D Sbjct: 294 SVLVGTDVISRGIDVVGIDLVVNYDVPPDPEDYIHRIGRTARAEATGTAITFINDKDQNK 353 Query: 357 IDAIEKLIEKKVDWL 371 IEKLIE++++ + Sbjct: 354 FHRIEKLIEREIEKI 368 >gi|212636402|ref|YP_002312927.1| DEAD box helicase [Shewanella piezotolerans WP3] gi|212557886|gb|ACJ30340.1| Helicase, DEAD box [Shewanella piezotolerans WP3] Length = 446 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 135/378 (35%), Positives = 216/378 (57%), Gaps = 17/378 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F L P ++ AV GY T +Q +P+ + D+ AQTGTGKTA+F LP+L Sbjct: 1 MNFDAFDLHPHILDAVSKRGYKALTEVQCHVLPVAMLGQDIMACAQTGTGKTAAFALPLL 60 Query: 61 -TILEKGRARVRMP------------RTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107 T++ + + ++ + L+L PTRELA QVADN + Y + A + Sbjct: 61 NTLVGQALQQSKVAEEDTFNQYRSELKVLVLTPTRELAIQVADNIQAYAQCLPFKTAAVY 120 Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167 GG Q K ++ G D+L+ TPGR+ D + L + + LV+DEADRMLDMGF+ I Sbjct: 121 GGANMNPQRKAVQAGVDILVATPGRLFDLIGQFGLDLGCVTHLVVDEADRMLDMGFVRDI 180 Query: 168 QNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227 + + LV QTL FSAT ++E++ +++ L P+ I+V T ++ ++ + ++ Sbjct: 181 ERVKRLVAVEHQTLFFSATYSEEVKALAQKMLVAPEWIDVTTAATASKIAQEVYL---VD 237 Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 +K LL +L+ ++ + ++F + K++ +L L+ G HG+ Q SR + Sbjct: 238 KRRKAELLSELV-GRNNWQQVLVFVSSKESAEHLHSELKLDGVKSAVFHGDKTQGSRNRA 296 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L FK G +++MVA+D+AARGLDI + V N ++P AE+Y+HR+GRTGRAG G+A + Sbjct: 297 LEEFKNGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLEGRAIS 356 Query: 348 LVAKEDIKHIDAIEKLIE 365 V+ +D + IE +IE Sbjct: 357 FVSPQDKTMLSEIETIIE 374 >gi|254459373|ref|ZP_05072794.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1] gi|207083986|gb|EDZ61277.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1] Length = 412 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 135/375 (36%), Positives = 223/375 (59%), Gaps = 12/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L LS ++ A++ + +PTPIQ K IPLVL DV A+TG+GK+AS++LP+L Sbjct: 1 MSFSSLKLSSQINKALVKHNFKEPTPIQEKVIPLVLDGRDVMAKAKTGSGKSASYILPIL 60 Query: 61 TILEK----GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIPFEA 114 +L+K G+A++++ L+L PTREL QVA FE +G+ V +IGG Sbjct: 61 ELLQKRRGEGKAKIKV---LVLTPTRELTLQVAQAFENFGEFMQTKPKVVSVIGGEGIGD 117 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q +++G D+L+ T GR LD ++ ++ ++++E LV+DEAD+ML++GF + + + Sbjct: 118 QLYAIQQGCDILVATSGRFLDVLSKKQMNLSHLEFLVLDEADKMLNLGFAEELDLVLEAI 177 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P RQ LLFSAT +++ ++ Q+ + ++ T +TI + + L Sbjct: 178 PEKRQNLLFSATYPEKILNIASRITQDSVEVSIDEDVPTVDTIIQRVIEV--NRDNRGPL 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L+ L++S+ +K+ ++F K+ N+ K GF+ + HG++ Q R L+ F++ Sbjct: 236 LRHLIKSE-KLKHILVFMANKRATDNIAEKFRKYGFTAESFHGDLHQEDRTYTLNEFRDK 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++ A+D+AARGLDI ++ V NFD+P +YIHRIGRT RAG+ G A + ++ ED Sbjct: 295 KINILFATDIAARGLDIENIECVINFDLPRSPTDYIHRIGRTARAGKSGLAISFISFEDQ 354 Query: 355 KHIDAIEKLIEKKVD 369 H IEK + K++ Sbjct: 355 AHFSVIEKKCKVKIE 369 >gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII] gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII] Length = 439 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 135/383 (35%), Positives = 213/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKT +F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTTAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|195492387|ref|XP_002093968.1| GE20460 [Drosophila yakuba] gi|194180069|gb|EDW93680.1| GE20460 [Drosophila yakuba] Length = 818 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 141/373 (37%), Positives = 213/373 (57%), Gaps = 12/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F + G V+ + G+ KPT IQ + P+ L D+ G+AQTG+GKT ++VLP + Sbjct: 156 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAV 215 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L+L PTRELA Q+ ++G N ++ + GG P Sbjct: 216 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 271 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 272 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 331 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ L++SAT E+++++E FL N ++ + + S +A V + K L Sbjct: 332 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 391 Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 ++ L S + IIF KK V + ++ +QG+ CAIHG+ Q+ R +LS+F+ Sbjct: 392 IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 451 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL + Sbjct: 452 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 511 Query: 354 I-KHIDAIEKLIE 365 K D I+ L E Sbjct: 512 ANKANDLIQVLRE 524 >gi|194865632|ref|XP_001971526.1| GG15018 [Drosophila erecta] gi|190653309|gb|EDV50552.1| GG15018 [Drosophila erecta] Length = 824 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 141/373 (37%), Positives = 213/373 (57%), Gaps = 12/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F + G V+ + G+ KPT IQ + P+ L D+ G+AQTG+GKT ++VLP + Sbjct: 157 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAV 216 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L+L PTRELA Q+ ++G N ++ + GG P Sbjct: 217 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 272 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 273 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ L++SAT E+++++E FL N ++ + + S +A V + K L Sbjct: 333 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 392 Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 ++ L S + IIF KK V + ++ +QG+ CAIHG+ Q+ R +LS+F+ Sbjct: 393 IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 452 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL + Sbjct: 453 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 512 Query: 354 I-KHIDAIEKLIE 365 K D I+ L E Sbjct: 513 ANKANDLIQVLRE 525 >gi|67459931|ref|NP_001019988.1| probable ATP-dependent RNA helicase DDX46 [Danio rerio] gi|82277867|sp|Q4TVV3|DDX46_DANRE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName: Full=DEAD box protein 46 gi|66473312|gb|AAY46301.1| DEAD box protein 46 [Danio rerio] Length = 1018 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 148/442 (33%), Positives = 237/442 (53%), Gaps = 15/442 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + G+S KV+ A+ Y KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 342 WVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 401 Query: 63 LEKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + R P +I+ PTRELA Q+ +K+ K+ L V + GG Q +L+ Sbjct: 402 ILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELK 461 Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 RGA++++CTPGR++D N G++ + + +VIDEADRM DMGF P + I V Sbjct: 462 RGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPD 521 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSAT ++ ++ L P ++V S +E + + KK L + Sbjct: 522 RQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVI--EEEKKFLKLLE 579 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L + IIF +++++ L L K + ++HG IDQ R I+++FK G + Sbjct: 580 ILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACR 639 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + + ++ Sbjct: 640 LLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYS 699 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQK 417 I K +E L+G SS+ LE++ + I + S+GF + + + Sbjct: 700 GDILKALE-----LSG--SSVPAELEQLWTNFKEQQKAEGKIIKSSSGFSGKGFKF-DET 751 Query: 418 SHIPLKESEKISKLQQDIQEND 439 H E +K+ K + ++D Sbjct: 752 EHALANERKKLQKWALGLHDSD 773 >gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp. lyrata] gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp. lyrata] Length = 455 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 232/418 (55%), Gaps = 18/418 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ ++V A G+ P+ IQ + +P L+ DV G+AQTG+GKT +F +P+L Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70 Query: 63 L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L +KGR +L PTRELA Q+A+ FE G + +L A+L+GGI Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L + V++ TPGR+ DH + K + +++ LV+DEADR+L+ F + I Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 +P R+T LFSATMT +++K+ L+NP +IE + ST +T++ + A+Y K C Sbjct: 191 EIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKY-KDC 249 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L+ L + ++ +IF L L GF I G + Q R+ L+ FK Sbjct: 250 YLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++V +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G +LV + Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 +++ IEKLI KK+ + + LE++ A+K + + K +G +R+ Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRR 420 >gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500] Length = 443 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 212/368 (57%), Gaps = 7/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG+ P++V A G+ PT IQ K IP L D+ G+AQTG+GKTA+F +PML Sbjct: 15 FEKLGVDPQIVEACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKTAAFSIPMLQA 74 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L A+ L+L PTRELA Q++D E G + A+L+GGI +Q+ L + Sbjct: 75 L---LAKPSGLFGLVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALAKK 131 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR++ H K + ++ V+DEADR+L M F I I ++P R T Sbjct: 132 PHIIVGTPGRVVYHLENTKGFNLKTLKYFVMDEADRLLGMDFEEEINTILKVIPKDRNTF 191 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT ++ K+ L +P +I+V T ST +T++ ++ + Y K L +L + Sbjct: 192 LFSATMTSKVAKLQRASLNDPVKIQVATKYSTVDTLQQEYI--FIPYKHKECYLTYIL-N 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIF + L L F I+G +DQ R+ L+ FK T+ ++VA Sbjct: 249 ELAGNSVIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMDILVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDIP V V N+DVP ++ Y+HR+GRT RAGR G+A TLV + D++ IE Sbjct: 309 TDVAARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQYDVEIYLRIE 368 Query: 362 KLIEKKVD 369 +E+K++ Sbjct: 369 HALEQKLE 376 >gi|73965189|ref|XP_861178.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 isoform 2 [Canis familiaris] Length = 432 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 205/339 (60%), Gaps = 11/339 (3%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMPR 74 Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML LE G P Sbjct: 9 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG----PI 64 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 +I+ PTREL Q+ +++GK YNL + GG Q K L+ GA++++CTPGR++ Sbjct: 65 AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLI 124 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 DH + + + LV DEADRM DMGF +++I S V RQTLLFSAT +++K+ Sbjct: 125 DHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKL 184 Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254 + + L +P R+ E + ++ SK L ++L++ + + ++F + Sbjct: 185 ARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS-GSVLLFVTK 243 Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 K N L ++L+++G ++ +HG++DQ R K++S+FK+ I ++VA+D+AARGLDIP + Sbjct: 244 KANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 303 Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 304 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 342 >gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480] gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480] Length = 474 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 219/369 (59%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + A Y PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 51 FKDLGIIDSLCDACTSLRYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQA 110 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK + L+L PTRELA Q+++ FE G ++ A+++GG+ +Q+ L + Sbjct: 111 LMEKPQPYF----GLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGK 166 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + N++ LV+DEADR+LD+ F P + I ++P R+T Sbjct: 167 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRT 226 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT++ +++ + L NP R+ +++ T T+ ++ +Y K L+ L Sbjct: 227 YLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKY-KDVYLVHIL- 284 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ ++ IIF L L GF +HG + Q +R+ L F+ G+ ++ Sbjct: 285 -NEFPGQSTIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRNIL 343 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP V V NFD+P+ ++ YIHR+GRT RAGR G+A ++V + +++ Sbjct: 344 VATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQYEVEIWQR 403 Query: 360 IEKLIEKKV 368 IE + K++ Sbjct: 404 IEVALGKQL 412 >gi|119945261|ref|YP_942941.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] gi|119863865|gb|ABM03342.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 441 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 218/375 (58%), Gaps = 21/375 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML- 60 +F +LGL ++ + + Y +PTPIQ K IP VL D+ A TG+GKTA+F LP+L Sbjct: 17 NFTELGLISPLLSRLTELEYQQPTPIQAKAIPSVLAGRDLIAGANTGSGKTAAFALPLLQ 76 Query: 61 ----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIG 108 T+ K R + LIL PTRELA QVAD+ + Y ++N + + G Sbjct: 77 QFGQHLPINKTLSSKNREGNYVA-GLILVPTRELAKQVADSIKSYAAHFNGAIKTVAVFG 135 Query: 109 GIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQ 168 G+ Q L G D+L+ TPGR+LD + + ++ ++ LV+DEADRML +GF + Sbjct: 136 GVSANTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELS 195 Query: 169 NITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAET-IEHCFVATYAQ 227 + +L+P ++Q LLFSAT +++Q +++ L +P +E+ SS A T ++ F Q Sbjct: 196 ALLALLPSSKQILLFSATFPEQVQALTQELLNDP--VEIQLQSSDASTLVQRVFTVNKGQ 253 Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 K ALL L++ Q + +IF N K + +L L K+G S HG+ Q +R ++ Sbjct: 254 ---KTALLAHLIK-QHQWQQALIFVNAKNSCNHLAEKLSKRGISAEVFHGDKGQGARSRV 309 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L FK G I +++A+D+AARGLDI + V NFD+P +Y+HRIGR+GRAG G A + Sbjct: 310 LDAFKAGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALS 369 Query: 348 LVAKEDIKHIDAIEK 362 L+ +D+ H + IEK Sbjct: 370 LIDHDDLHHFNVIEK 384 >gi|312375100|gb|EFR22532.1| hypothetical protein AND_15065 [Anopheles darlingi] Length = 821 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 136/379 (35%), Positives = 210/379 (55%), Gaps = 41/379 (10%) Query: 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62 PK + ++D GY PTPIQ + IP+ LQ D+ GIA+TG+GKT +F++P+LT Sbjct: 401 PKEILEIIDKVGYKDPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLTWIQSLPK 460 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E+ + P +IL PTRELA Q+ + +K+G + +++GG+ E Q +L G Sbjct: 461 IERQETADQGPYAIILAPTRELAQQIEEETQKFGTPLGIRTVVVVGGLSREEQGFRLRLG 520 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P T Sbjct: 521 CEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPD 580 Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNT---PSSTA 214 RQT++F+ATM +++++ +L+ P + + + P+ Sbjct: 581 TEEAEDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSIGKPTERT 640 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 E I H + K+ L++ L S+ IIF NQKK L LEK G++ C Sbjct: 641 EQIIHIM----GENDKRKKLMEIL--SRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACT 694 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG Q R L++ K G+ ++VA+D+A RG+DI DV V N+D+ E+Y HRIG Sbjct: 695 LHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIG 754 Query: 335 RTGRAGRHGKAFTLVAKED 353 RTGRAG+ G A + K+D Sbjct: 755 RTGRAGKTGCAISFCTKDD 773 >gi|114669836|ref|XP_001147439.1| PREDICTED: DEAD box polypeptide 42 protein isoform 2 [Pan troglodytes] gi|114669838|ref|XP_001147515.1| PREDICTED: DEAD box polypeptide 42 protein isoform 3 [Pan troglodytes] Length = 674 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 205/339 (60%), Gaps = 11/339 (3%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML------TILEKGRARVRMPR 74 Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ PML LE G P Sbjct: 9 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG----PI 64 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 +I+ PTREL Q+ +++GK YNL + GG Q K L+ GA++++CTPGR++ Sbjct: 65 AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLI 124 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKV 194 DH + + + LV DEADRM DMGF +++I S V RQTLLFSAT +++K+ Sbjct: 125 DHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKL 184 Query: 195 SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254 + + L +P R+ E + ++ SK L ++L++ + + ++F + Sbjct: 185 ARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS-GSVLLFVTK 243 Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 K N L ++L+++G ++ +HG++DQ R K++S+FK+ I ++VA+D+AARGLDIP + Sbjct: 244 KANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 303 Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 304 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 342 >gi|88860256|ref|ZP_01134894.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2] gi|88817454|gb|EAR27271.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2] Length = 408 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 209/370 (56%), Gaps = 4/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FADL L K++ A+ AGY PT IQ IP + D+ A TGTGKTA+F+LP + Sbjct: 1 MQFADLDLDKKILNAIDKAGYKTPTSIQQLAIPEAMAGRDILASAPTGTGKTAAFLLPSI 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R R LI+ PTRELA Q+ + + N +L + ++ GGI + + Sbjct: 61 QYLLDFPRRDPGFARVLIMTPTRELAYQIHEQCVLFAANTHLKIGVVTGGINYGSHKDIF 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E+ D+LI TPGR++D+ + N+EIL++DEADRMLDMGF + I RQ Sbjct: 121 EKNNDILIATPGRLMDYMKTEEFHAENVEILILDEADRMLDMGFRSEMMKICDEATNRRQ 180 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT+ D +++ ++ L +P +E + I +V + K LL+ + Sbjct: 181 CFLFSATLEGDSVERFADTILNDPALLEAESSRKEQGKILQ-WVHLADSRNHKLDLLEAI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+++D M I+F ++ + L L + + G + Q RM ++NF+ G + Sbjct: 240 LKAED-MSKAIVFVKTREKLEELVGLLVARDIKTAWLRGEMPQDKRMAAMANFQSGRANI 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ D+ HV N+D+P A+ Y+HRIGRTGRAG+ G A +LV D+ + Sbjct: 299 LVATDVAARGIDVTDISHVINYDMPRTADIYVHRIGRTGRAGKKGVAISLVEAHDVGILK 358 Query: 359 AIEKLIEKKV 368 IE+ E+ + Sbjct: 359 KIERYTEQNL 368 >gi|121595996|ref|YP_987892.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp. JS42] gi|120608076|gb|ABM43816.1| ATP-dependent RNA helicase DbpA [Acidovorax sp. JS42] Length = 469 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 143/392 (36%), Positives = 219/392 (55%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LSP+++ + GY + TPIQ ++P LQ D+ A TG+GKTA+F L M+ Sbjct: 16 FSSLPLSPEMLANLQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMVDR 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + L+L PTRELA QVA + + N+ V + GG+P Q LE Sbjct: 76 LNP---RWFAVQGLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIASLEN 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++D RGKL + N++ LV+DEADRMLDMGF+ I+ + P RQTL Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIANLKTLVLDEADRMLDMGFLADIETVVRQCPAERQTL 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + +++ F++ P+ ++V + + + +K ++ ++L + Sbjct: 193 LFSATYPDGIAGLAQRFMRAPQMVKVAAQHGAGKIAQRWY---EVDAREKVDVVARML-A 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ N+ +L+ QGFS A+ G ++QR R ++L F + ++VA Sbjct: 249 HFRPASSIAFCNTKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI D+ V N DV E +IHRIGRTGR G A LV+ +++ + IE Sbjct: 309 TDVAARGIDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGRIE 368 Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDI 387 L + ++ D L PP+ I I Sbjct: 369 LLQGRACEFFPVDELTPTAGGELRPPMCTIQI 400 >gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like [Saccoglossus kowalevskii] Length = 446 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 143/394 (36%), Positives = 232/394 (58%), Gaps = 10/394 (2%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F LGL V+C + + +PT IQ ++IPL L+ DV G+A+TG+GKT +F LP+L Sbjct: 25 FKSLGLV-DVLCETCEQLKWKEPTKIQRESIPLALEGKDVIGLAETGSGKTGAFALPILQ 83 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + R+ LIL PTRELA Q+++ FE G + A+++GGI +Q +L + Sbjct: 84 DLLEHPQRLF---ALILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAK 140 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR++DH K + +++ LV+DEADR+L+M F + I ++P R+T Sbjct: 141 KPHVVVATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKILKVIPRERRT 200 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+SATMT ++ K+ L+NP ++EVNT T E + ++ ++Y K L+ L Sbjct: 201 YLYSATMTKKVAKLQRASLKNPVKVEVNTKYQTVEKLLQYYLFIPSKY-KDVYLVYIL-- 257 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + ++FC+ N + L G + +HG + Q R+ +L+ FK +++ Sbjct: 258 NELAGNSFMVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGKDRSILI 317 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDIP V V NFD+P +++YIHR+GRT RAG+ GKA T V + D++ I Sbjct: 318 ATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQYDVELYQRI 377 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 E+LI K++ + + +E++ AQ +AR Sbjct: 378 EQLISKQLPLYPSEEEDVMMLVERVTEAQR-YAR 410 >gi|242002440|ref|XP_002435863.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis] gi|215499199|gb|EEC08693.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis] Length = 494 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 221/387 (57%), Gaps = 20/387 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + L+ + + A Y PTP+Q IP++L + D+ AQTG+GKTA+F++P+L Sbjct: 86 FDECSLTEIIRVNIELAHYTCPTPVQKHAIPIILAKRDLMACAQTGSGKTAAFLVPILNQ 145 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + E G + + P LIL PTRELA Q+ + K+ + ++ GG Q K L+R Sbjct: 146 VFEDGPPKNQYPLALILSPTRELACQIYEEACKFAYRSRVRPCVVYGGADPMQQMKDLDR 205 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT---SLVPF-T 177 G +L+ TPGR++D RGK+ + + LV+DEADRMLDMGF P I+ I ++ P Sbjct: 206 GCHLLVATPGRLVDMMERGKVSLELVRYLVLDEADRMLDMGFEPQIRRIVLEDNMPPVGQ 265 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL+FSAT ++Q+++ FL N + V ST+E I V + + K + L Sbjct: 266 RQTLMFSATFPKKVQELARKFLDNYIFLAVGRVGSTSENITQKVV--WVEEHDKRSFLLD 323 Query: 238 LLQ-------SQDTMKNGII--FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 LL SQ + + + F KK +L H L K+G+ V +IHG+ QR R L Sbjct: 324 LLNAAGLRTGSQAALSDSLTLTFVETKKGADSLEHFLMKEGYPVTSIHGDRSQREREDAL 383 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 +F++G ++VA+ +AARGLDIP+V HV NFD+P+ E Y+HRIGRTGR G G A + Sbjct: 384 WSFRKGHTPILVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 443 Query: 349 VAKEDIK-HIDAIEKLIEKKV---DWL 371 +++ +D +E + E K DWL Sbjct: 444 FNEKNRNMALDLVELITETKQELPDWL 470 >gi|50554139|ref|XP_504478.1| YALI0E27715p [Yarrowia lipolytica] gi|74659776|sp|Q6C4D4|DBP2_YARLI RecName: Full=ATP-dependent RNA helicase DBP2 gi|49650347|emb|CAG80081.1| YALI0E27715p [Yarrowia lipolytica] Length = 552 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 211/370 (57%), Gaps = 27/370 (7%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F + G P V+ V G+ KPT IQ + P+ L DV GIA TG+GKT S+ LP + Sbjct: 117 NFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIV 176 Query: 62 ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 177 HINAQPMLSHGDG----PIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQ 232 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L RG +++I TPGR+LD GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 233 IRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 292 Query: 176 FTRQTLLFSATMTDELQKVSENFLQ-----NPKRIEVNTPSSTAETIEHCFVATYAQYSK 230 RQTL++SAT E+Q+++ ++L+ N +E++ + + +E C +Y K Sbjct: 293 PDRQTLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVC-----TEYEK 347 Query: 231 KCALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 + L++ L + M+N +IF K+ ++ L + G+ AIHG+ Q+ R Sbjct: 348 RDRLVKHL---ETVMENKESKCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDW 404 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 +L+ F++G +MVA+D+A+RG+D+ + V N+D P+ +E+Y+HRIGRTGRAG G A+ Sbjct: 405 VLNEFRQGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAY 464 Query: 347 TLVAKEDIKH 356 T +++ K Sbjct: 465 TYFTEDNRKQ 474 >gi|42521938|ref|NP_967318.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] gi|39574468|emb|CAE77972.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] Length = 473 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 218/372 (58%), Gaps = 13/372 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ L+P ++ A+ KPTP+Q + IP L D+ IAQTG+GKT +F L +LT Sbjct: 35 FQEMNLAPVLLPALTKMKISKPTPVQSQAIPASLDGSDIIAIAQTGSGKTLAFALSLLTT 94 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+K R LIL P+RE+A Q+ F + ++V L IGG Q +L++ Sbjct: 95 LQKKPE----ARGLILVPSREMAQQIYKVFLELCAEMPVSVCLAIGGTTGSKQANQLKKN 150 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++I TPGR+ DH + KLL+ N+E++V+DEADRMLDMGF P ++ I S + RQT++ Sbjct: 151 PRLIIATPGRMNDHLSGNKLLLQNVEVIVLDEADRMLDMGFAPQLRTIQSTLRGPRQTMM 210 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSA+ ++ +++ F++ P + V + + A + S K +LL Sbjct: 211 FSASFGSNVESIAQLFMK-PDVVMVRSEKAEAPVESLKQKVLFLDRSMKN---DRLLDEL 266 Query: 243 DTMKNGII-FCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + G+I F ++N + + L++ GFS IHG + Q R +++ F+EG I+++VA Sbjct: 267 NATRGGVIVFTGNQENCEAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGFREGEIRIVVA 326 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +DL ARGLD+P V HV NFD+P ++E+++HRIGRT RAGR G+A T V D + I+ Sbjct: 327 TDLLARGLDVPHVDHVVNFDLPFQSEDFLHRIGRTARAGRGGEAITFVTPSDTRMYAKIK 386 Query: 362 KLI----EKKVD 369 + E KVD Sbjct: 387 GYLQGAQEIKVD 398 >gi|260774211|ref|ZP_05883126.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] gi|260611172|gb|EEX36376.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] Length = 442 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 143/418 (34%), Positives = 223/418 (53%), Gaps = 12/418 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +LGL +++ + + + T IQ + IP+ + D+ ++TG+GKT +F+LPML Sbjct: 1 MQFKELGLDNRLLKTLAHYDFKQATDIQRQAIPVAMAGKDLLASSKTGSGKTLAFLLPML 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 K +A R PR +IL PTRELA QV + T L+ GG F Q L Sbjct: 61 HKALKTKALSARDPRGVILVPTRELAKQVYSELRSALAGLSYTATLITGGENFNDQVNAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 RG ++ TPGR+ DH L + ++ L++DEADRMLD+GF P +++I + R Sbjct: 121 RRGPKFIVATPGRLADHLEHRSLFLQGLDTLILDEADRMLDLGFAPQLRHIHNAAKHRRR 180 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTL+FSAT+ E+ ++ L+ PKRI + + + I F K ALL + Sbjct: 181 QTLMFSATLDHAEMNTIAHEMLKEPKRIAIGLGNEQHKDIRQRFYLC-DHLDHKEALLDR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L + + IIF + + L + L +Q V A+ G++ Q R I+S F+ + Sbjct: 240 ILNDAE-YRQVIIFTATRADTERLTNKLNEQNLKVVALSGSLTQTQRNTIMSQFERAVFK 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++V +D+A+RGLDI +V HV NFD+P E Y+HR+GRTGRAG G A +LV +D Sbjct: 299 ILVTTDIASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNQGDAISLVGPKDWDSF 358 Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNP--PLEKIDIAQHNHARKNNPIPQKSTGFDR 408 +E +++ + + L G + L P PL K ++ ++ +PQK D+ Sbjct: 359 KRVEAFLQQDIQFEVLEGLQGKFTGLRPRQPLNKATVSTGKVKKQVKTLPQKPVKRDK 416 >gi|332994271|gb|AEF04326.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2] Length = 414 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 209/370 (56%), Gaps = 5/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L ++ AV D GY PT +Q IP + D+ A TGTGKTA+F+LP+ Sbjct: 1 MTFEDLELDEELCHAVADMGYESPTSVQSLVIPHAMDGRDILASAPTGTGKTAAFLLPVC 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + R LIL PTRELA QV + + K+ ++ ++ GGI + + L Sbjct: 61 QFLLDYPRKQPGSTRILILTPTRELALQVYEQAVELTKHTDIVSGVITGGINYGTDRETL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+L+ TPGR+ +H +IE L++DEADRMLDMGF + I S + +Q Sbjct: 121 SQSIDILVATPGRLFEHIQNEMADCRDIECLILDEADRMLDMGFRTIVNQIASEARWRKQ 180 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +LFSAT+ + + +++ LQNP+ IE PS + H + + K ALL + Sbjct: 181 NMLFSATLEGGGVSQFAKDILQNPEVIEA-FPSRKEKNKIHQWYHLADDLNHKKALLVHI 239 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ Q T ++F ++ + L L Q VC + G + Q RM L+ FK G + + Sbjct: 240 LKEQAT--TTVVFVKTRERLQMLKDYLASQDIMVCWLQGEMPQDKRMAALTRFKSGEVPV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+D+P+V HV NFD+P +A+ Y+HRIGRTGRAG G A +L+ D + I Sbjct: 298 LLATDVAARGIDVPEVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLIEAHDFEFIT 357 Query: 359 AIEKLIEKKV 368 + E+ + Sbjct: 358 KAARYTEEPI 367 >gi|293391525|ref|ZP_06635859.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952059|gb|EFE02178.1| ATP-dependent RNA helicase SrmB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 443 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 209/364 (57%), Gaps = 4/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FAD L+P+++ A+ GY +PT IQ +TIP + DV G A TGTGKTA+F+LP + Sbjct: 5 IQFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAI 64 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR L+L PTRELA QVA+ ++ L++A + GG+ ++ + Sbjct: 65 QHLLDYPRRKPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQNHGEIF 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + D+++ TPGR+L + +EIL+ DEADRML MGF + I + + +Q Sbjct: 125 NKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQ 184 Query: 180 TLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 TLLFSAT+ D L+ + L P +IE + I+ + + + K LL + Sbjct: 185 TLLFSATLEGDLLEDFAARTLNEPVKIEAEPSRRERKKIQQWYYHADS-HEHKFKLLARF 243 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ Q+ + GI+F +++ V L +L K+G + G + Q R + K G + + Sbjct: 244 IE-QEQVSKGIVFVRRREEVRELAENLRKRGIRSAYLEGEMAQTQRNNAIDKLKNGVVTV 302 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +V++D++ARG+DI DV H+ NFD+P A+ Y+HRIGRT RAG+ G A + V D + + Sbjct: 303 LVSTDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLG 362 Query: 359 AIEK 362 I++ Sbjct: 363 KIKR 366 >gi|195998213|ref|XP_002108975.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens] gi|190589751|gb|EDV29773.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens] Length = 654 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 143/386 (37%), Positives = 217/386 (56%), Gaps = 13/386 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F++ V+ + + G+ PTPIQ ++ P+ L DV GIAQTG+GKT ++VLP + Sbjct: 79 LSFSEASFPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAYVLPSI 138 Query: 61 TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 I K + +R P LIL PTRELA QV +G+ + A + GG P Q + Sbjct: 139 -IHIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGRLARINCACIYGGSPKGPQLR 197 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +L RG ++ + TPGR+LD + +N LV+DEADRMLDMGF P I+ I + Sbjct: 198 ELSRGVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCP 257 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232 RQT+++SAT E++ ++ FL++ +I + + T + +E C + K C Sbjct: 258 RQTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVC--REEEKEDKLC 315 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LL +L+ + K I+F KK L L + G+ V IHG+ Q R ++LS F+ Sbjct: 316 KLLSDILRQDE--KKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFR 373 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G I +++A+D+AARGLDI DV V N+D PN +E+Y+HRIGRT R+G+ G A+T Sbjct: 374 SGRIPVLIATDVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTAS 433 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSL 378 +I+ + L+ + +N DL L Sbjct: 434 NIRQSPNLIALLREANQPINPDLIQL 459 >gi|157121045|ref|XP_001653747.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] gi|108882993|gb|EAT47218.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] Length = 814 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 138/386 (35%), Positives = 215/386 (55%), Gaps = 42/386 (10%) Query: 3 FADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +++ G PK + ++D GY +PTPIQ + IP+ LQ D+ GIA+TG+GKT +F++P+LT Sbjct: 388 WSETGF-PKEILDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLT 446 Query: 62 ILEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 ++ R+ P +IL PTRELA Q+ + +K+G+ + +++GG+ E Q Sbjct: 447 WIQSLPKIDRLETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQ 506 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 +L G +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P Sbjct: 507 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 566 Query: 176 FT-------------------------RQTLLFSATMTDELQKVSENFLQNPKRI---EV 207 T RQT++F+ATM +++++ +L+ P + V Sbjct: 567 VTNLKPDTEEAEDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 626 Query: 208 NTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK 267 P+ E I H + K+ L++ L S+ IIF NQKK L LEK Sbjct: 627 GKPTERTEQIVHIMT----ENEKRKKLMEIL--SRGVEPPCIIFVNQKKGADVLAKGLEK 680 Query: 268 QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAE 327 G++ C +HG Q R L++ K G+ ++VA+D+A RG+DI DV V N+D+ E Sbjct: 681 LGYNACTLHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIE 740 Query: 328 NYIHRIGRTGRAGRHGKAFTLVAKED 353 +Y HRIGRTGRAG+ G A + K+D Sbjct: 741 DYTHRIGRTGRAGKTGCAISFCTKDD 766 >gi|94314203|ref|YP_587412.1| 23S rRNA ATP-dependent RNA helicase [Cupriavidus metallidurans CH34] gi|93358055|gb|ABF12143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Cupriavidus metallidurans CH34] Length = 467 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 203/369 (55%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA L LS + ++ GY TPIQ ++PL L HD+ A+TG+GKTA+F L +L Sbjct: 9 FATLPLSAAMQATLVQLGYDAMTPIQAASLPLALAGHDLIAQARTGSGKTAAFALSLLHR 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ V+ L+L PTRELA QV + + N+ V L GG P Q + L Sbjct: 69 LDPRPLDVQ---ALVLCPTRELADQVTQEIRRLARAEDNVKVLTLSGGTPIRPQVESLVH 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH +RG L ++ I LV+DEADRMLDMGF I I S P RQTL Sbjct: 126 GAHVVVGTPGRIIDHLDRGSLNIDAINTLVLDEADRMLDMGFHDDIAFIASHAPKDRQTL 185 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + K++ FL+ PK ++V A + + L + Sbjct: 186 LFSATYPAAIDKLAHRFLRQPKTVKVEEAHDAATITQRFYEVEEGDRLNAVGRLLDHFRP 245 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 T+ FCN K +L L QG++ +HG++DQR R ++L F + ++VA Sbjct: 246 ATTLA----FCNTKARCRDLADLLRAQGYAALELHGDLDQRDRDQVLVQFANRSCSVLVA 301 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HR+GRTGRAG G AF+LV+ +++ + IE Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRVGRTGRAGEAGSAFSLVSLDEMGRVGNIE 361 Query: 362 KLIEKKVDW 370 + + +W Sbjct: 362 QHQGGEFEW 370 >gi|300855475|ref|YP_003780459.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528] gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528] Length = 369 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 216/368 (58%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF +L LS ++ + G KPTPIQ ++I + + DV AQTGTGKT +F+LP Sbjct: 1 MDFKELELSENIINELKHMGITKPTPIQQESIKFIREGKDVIAEAQTGTGKTLAFLLP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I E + + LI+ PTRELA Q+ + K K ++ + GG +Q KKL+ Sbjct: 59 -IFENISPNINSTQALIVTPTRELAIQITEEALKLKKAKDINILAAYGGKDIGSQLKKLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R ++I TPGR+LDH +R + ++ ++ LV+DEAD+ML MGF +++I V RQT Sbjct: 118 RNIHLIIATPGRLLDHLHRKTIDLSKLKTLVLDEADQMLLMGFKNDVEDIIKEVSKKRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM +++K++ ++ +P + + T I+ + T K+ AL + Q Sbjct: 178 LCFSATMNSDVKKLAYRYMTDPLVVSIKKEKVTLNNIKQYVIET-TDRKKQDALCNIIDQ 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 M IIFC K+ V +L +L ++G++ +H +I Q R +I+ +F+ IQ ++ Sbjct: 237 DNPFM--AIIFCRTKRRVDDLEIALYQRGYNCKKLHSDIPQSKRERIMKSFRNADIQYLI 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V H++N+D+P E+YIHRIGRTGRAG G V +D + ++ I Sbjct: 295 ATDVAARGLDISGVTHIYNYDIPENVESYIHRIGRTGRAGEEGCTCLFVDPKDKRTLEEI 354 Query: 361 EKLIEKKV 368 E+ I+ ++ Sbjct: 355 ERGIKFRI 362 >gi|170029482|ref|XP_001842621.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex quinquefasciatus] gi|167863205|gb|EDS26588.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex quinquefasciatus] Length = 815 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 212/379 (55%), Gaps = 41/379 (10%) Query: 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62 PK V ++D GY +PTPIQ + IP+ LQ D+ GIA+TG+GKT +F++P+L Sbjct: 395 PKEVLEIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLNWIQGLPK 454 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E+ + P +IL PTRELA Q+ + +K+G+ + +++GG+ E Q +L G Sbjct: 455 IERQETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRLG 514 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P T Sbjct: 515 CEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPD 574 Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTA 214 RQT++F+ATM +++++ +L+ P + V P+ Sbjct: 575 TEEAEDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 634 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 E I H + T + KK L ++L S+ IIF NQKK L LEK G++ C Sbjct: 635 EQIVH--IVTENEKRKK---LMEIL-SRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACT 688 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG Q R L++ K G+ ++VA+D+A RG+DI DV V N+D+ E+Y HRIG Sbjct: 689 LHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIG 748 Query: 335 RTGRAGRHGKAFTLVAKED 353 RTGRAG+ G A + K+D Sbjct: 749 RTGRAGKTGCAISFCTKDD 767 >gi|271500546|ref|YP_003333571.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii Ech586] gi|270344101|gb|ACZ76866.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586] Length = 457 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 221/370 (59%), Gaps = 9/370 (2%) Query: 3 FADL-GLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA+L L+ + + + + GY+ TPIQ +P +L DV A+TG+GKTA+F L +L Sbjct: 4 FAELNALAAEQLTTLNELGYLSMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ G+ + + +L+L PTRELA QVA+ + + N+ V +L GG+PF Q L Sbjct: 64 HLDAGQFKTQ---SLVLCPTRELADQVANELRRLARGMPNIKVLVLCGGVPFSIQRDSLI 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH + + ++ ++ LV+DEADRMLDMGF I + P RQT Sbjct: 121 HAPHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIHHAPAERQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + + +S ++P IE++T +E F + K LLQ+LL Sbjct: 181 LLFSATWPEAIAAISRRIQRDPLVIEIDTVDEL-PAVEQQFYEV--SRNGKLDLLQKLL- 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S++ + ++FCN KK+ + +L SV A+HG+++QR R + L F G+ +++V Sbjct: 237 SREQPASCVVFCNTKKDCQAVYDALTHSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V N+++ E ++HRIGRT RAG G A +L A E+ + +A+ Sbjct: 297 ATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGEQGLAISLCAPEEAQRANAL 356 Query: 361 EKLIEKKVDW 370 E++++ K+ W Sbjct: 357 EEMLKMKLTW 366 >gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans] gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans] Length = 519 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 65 LTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 124 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 125 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 181 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 182 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 241 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T E ++ ++ +Y K L +L Sbjct: 242 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 299 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 300 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSIL 358 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA TLV++ DI+ Sbjct: 359 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQR 418 Query: 360 IEKLIEKKV 368 IE L+ K++ Sbjct: 419 IEHLLGKQL 427 >gi|239615016|gb|EEQ92003.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ER-3] gi|327357154|gb|EGE86011.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ATCC 18188] Length = 548 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 135/374 (36%), Positives = 211/374 (56%), Gaps = 13/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 132 FDEAGFPQYVMSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 191 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 192 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 247 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 248 RDLTRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 307 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT ++++++++FL + ++ + + +A V +++ K+ + + Sbjct: 308 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 367 Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L + + KN +IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 368 HLDRIMEENKNAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 427 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A TL ++ Sbjct: 428 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 487 Query: 355 KHI-DAIEKLIEKK 367 K D + L E K Sbjct: 488 KQARDLVSILTESK 501 >gi|149910407|ref|ZP_01899049.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36] gi|149806555|gb|EDM66524.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36] Length = 460 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 216/371 (58%), Gaps = 5/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D G+ P+++ ++ G+ + T +Q IPL+L D+ +QTG+GKT ++ LP+L Sbjct: 1 MRFQDFGIDPRLISSIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPIL 60 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L++ R R R +IL PTRELA QV N + G + + + L+IG F+ Q K L Sbjct: 61 QRMLKQRRFEHRAVRAVILAPTRELAIQVHANMKHLGMSLDYQIQLIIGRESFQHQEKLL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-FTR 178 + +VLI TPGR+LDH + + ++E LV+DEADRMLDMGF + I++ P R Sbjct: 121 RKNPEVLIATPGRLLDHIREKSISLEHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKR 180 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QT+LFSAT+ ++ + L+ P+RIE+N + E IE + + K L Sbjct: 181 QTMLFSATLEHVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFS-DNLTHKEEQLVH 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S+D + +IF K + L L +IHG++ Q R + L +F+ G + Sbjct: 240 LVKSED-YRQLLIFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVG 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + HV NFD+P E++IHR GRTGRAG G A +LV+ +D Sbjct: 299 VLVATDVAARGLDIRTLSHVINFDLPINPEDFIHRTGRTGRAGATGIAISLVSPKDWTSF 358 Query: 358 DAIEKLIEKKV 368 I+ ++ K+ Sbjct: 359 GKIQSYLKVKL 369 >gi|288818118|ref|YP_003432466.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6] gi|288787518|dbj|BAI69265.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6] gi|308751719|gb|ADO45202.1| DEAD/DEAH box helicase domain protein [Hydrogenobacter thermophilus TK-6] Length = 365 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 141/367 (38%), Positives = 217/367 (59%), Gaps = 7/367 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LS + A+ D GY +PTPIQ + IPL L+ +D+ G A TGTGKTA+F +P++ Sbjct: 1 MEFNFQQLSEILQKAIRDLGYEEPTPIQKEAIPLALKGYDIMGQAATGTGKTAAFGIPIV 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + K + L+L PTRELA QV + K L V + GG P + L Sbjct: 61 EKISKDDGL----KALVLTPTRELALQVKEQLYALSKYKALKVFVFYGGTPVRRDLELLS 116 Query: 121 RGA-DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + +++I TPGRI D +RG L + + LV+DEAD MLDMGF+ I++I + P RQ Sbjct: 117 KVVPNIVIGTPGRIKDLLSRGVLNLGGVSFLVLDEADLMLDMGFVEDIESIIAYTPKDRQ 176 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSAT+ E++ ++ L++ + + IE + + +K + L+++L Sbjct: 177 TFLFSATIPKEIELLARKHLKDDYKFVRVISAELKPKIEERLIRLNSS-KQKISELERIL 235 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++ IIF KK+ ++ L+ +GFSV ++HG++ QR R L F+EG ++ + Sbjct: 236 R-EHLLEKVIIFVRTKKDARDISQELKNRGFSVVSLHGDMTQRQRENALKLFREGKVKTV 294 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+A+RGLDI V V N+ +P E YIHRIGRTGR G +GKA++L+ ED K + Sbjct: 295 VATDVASRGLDIKGVSLVINYQIPEDPEVYIHRIGRTGRVGSYGKAYSLITPEDSKALWR 354 Query: 360 IEKLIEK 366 I+K+ E+ Sbjct: 355 IKKVKER 361 >gi|34539956|ref|NP_904435.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83] gi|34396267|gb|AAQ65334.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas gingivalis W83] Length = 604 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 222/369 (60%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F +LG++ + A+ + G+ +P P+Q + IP +L D+ +AQTGTGKTA+F LP+L Sbjct: 4 FEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R P+ L+L PTREL Q+AD+ Y K ++ + + GG P +AQ + L Sbjct: 64 KIDLSGGR---PQALVLCPTRELCLQIADDLNSYSKYLSDVHILPVYGGTPIDAQIRALR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + +++I +V+DEAD ML+MGF ++ I + +P R Sbjct: 121 RGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILADIPSERHL 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+ K++ +++++PK I + + I+H + A++ K L+++ Sbjct: 181 LLFSATMPKEISKIATSYMKDPKEIVIGNKNEGNANIKHLYYMVSARH--KYLALKRIAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+FC +K + L + G++ ++HG++ Q R ++ F+ +QL+V Sbjct: 239 YYPNI-YGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV +F +P+ E+Y HR GRT RAG+ G + + ++ I I Sbjct: 298 ATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGKIKNI 357 Query: 361 EKLIEKKVD 369 E+ ++K+++ Sbjct: 358 ERTMQKQIE 366 >gi|242051719|ref|XP_002455005.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor] gi|241926980|gb|EES00125.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor] Length = 488 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 140/427 (32%), Positives = 230/427 (53%), Gaps = 38/427 (8%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F D+G V+ + AG+V+PTPIQ + P+ L+ D+ GIA+TG+GKT +++LP + Sbjct: 91 LEFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAI 150 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 IL G P L+L PTRELA Q+ K+G + + + GG+P Sbjct: 151 VHVNAQPILAPGDG----PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGP 206 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L++G +++I TPGR++D + + LV+DEADRMLDMGF P I+ I S + Sbjct: 207 QVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQI 266 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA--ETIEHCFVATYAQ-YSKK 231 RQTL +SAT E+++++ NFL +P ++ + + A ++H + + +Q Y+K Sbjct: 267 RPDRQTLYWSATWPKEVEQLARNFLFDPYKVTIGSEELKANHAIVQHVEILSESQKYNKL 326 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL+ ++ + IF + KK + L G+ +IHG+ Q R +LS F Sbjct: 327 VNLLEDIMDGSRIL----IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 382 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K G +M A+D+AARGL V +V N+D P E+Y+HRIGRTGRAG G A++ Sbjct: 383 KSGKSPIMTATDVAARGL----VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTA 438 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + + + ++E+ ++ +L+++ + P P S+G+ R + Sbjct: 439 ANARFAKELISILEEAGQKVSSELAAMG---------------RGAPPP--SSGYRDRYR 481 Query: 412 NYSSQKS 418 Y +S Sbjct: 482 GYGGGRS 488 >gi|314927518|gb|EFS91349.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1] gi|328907794|gb|EGG27557.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium sp. P08] Length = 536 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 148/410 (36%), Positives = 225/410 (54%), Gaps = 20/410 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 35 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 94 Query: 63 L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QV+ + V + GG+ +E Q Sbjct: 95 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSQDISTAASVRGARVLTVYGGVGYEPQ 154 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ P Sbjct: 155 IDALQAGVDVVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGRTP 214 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT+LFSATM + ++ + L P + + A + A K ++ Sbjct: 215 TPRQTMLFSATMPAPIMALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEII 274 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++LQ+ D K IIFC K+ L L +GF AIHG++ Q +R K L F+ G Sbjct: 275 GRILQANDAEKV-IIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGD 333 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV D+ Sbjct: 334 VTILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADVT 393 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 KLI+K LN +LS P+E + H + + IP+ + G Sbjct: 394 RW----KLIDKA---LNLELSE---PVETYSTSPHLYTDLD--IPEDARG 431 >gi|221504668|gb|EEE30341.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG] Length = 522 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 213/381 (55%), Gaps = 35/381 (9%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +A+ L +++ AV A Y +PTPIQ++ IP+ L++ D+ GIA+TG+GKTA+FVLPMLT Sbjct: 103 WAESALPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTY 162 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + KG + P LIL P+RELA Q+ + +K+ ++GG E Q Sbjct: 163 V-KGLPPLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQA 221 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L RGA+++I TPGR+ D + ++N +V+DEADRM+DMGF + I +P Sbjct: 222 FQLRRGAEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPT 281 Query: 177 T------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS 212 + R T +FSATM +++++ +L+ P I + P + Sbjct: 282 SNLKSNDEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGA 341 Query: 213 TAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSV 272 IE + ++K LQ +L+ + ++F NQKK+ L L K G+S Sbjct: 342 GKRAIEQ--RVEFVPEARKKQRLQDVLE--NATPPVMVFVNQKKSADALAKVLGKLGYSA 397 Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332 C++HG Q +R LS+FKEG+ ++VA+D+A RG+D+ V V NFD+P E Y HR Sbjct: 398 CSLHGGKAQENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHR 457 Query: 333 IGRTGRAGRHGKAFTLVAKED 353 IGRTGRAGR G A + + +ED Sbjct: 458 IGRTGRAGRKGLAISFLTEED 478 >gi|313674606|ref|YP_004052602.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM 4126] gi|312941304|gb|ADR20494.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM 4126] Length = 405 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 214/371 (57%), Gaps = 8/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F +L P + + G+ K TPIQ + IP +L+ D+ AQTGTGKTA+FVLP+L Sbjct: 1 MEFKELNFHPTLSEGLEMMGFQKATPIQTEAIPKILEGKDLIACAQTGTGKTAAFVLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 + + TLI+ PTREL Q+ E + N + + GG +E Q K Sbjct: 61 HKIANS-GETKGVNTLIIAPTRELVQQIDQQIEGFSYFTNASSIAIYGGGDGAAWEQQKK 119 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + G D+L+ TPGR++ N + ++N++ L++DEADRMLDMGF I I +P Sbjct: 120 AIRAGVDILVATPGRLIALLNSNETQLDNVQHLILDEADRMLDMGFHDDIMRIVKQLPQK 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSATM +++K++ L NP+ I ++ A + F+ TY + K LL+ Sbjct: 180 RQTLLFSATMPPKIKKLAGAILNNPEEISLSISKPAAGISQKAFL-TYDGH--KTQLLKF 236 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L S + I+F +K V +L L+ G SV A ++DQ+ R I+ +F+ +Q Sbjct: 237 ILGS-GIYETAIVFAGKKDKVKSLERDLKDIGMSVKAFSSDLDQKEREIIMRDFRAKKVQ 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++ +D+ +RG+D+ ++ V N+DVP E+Y+HRIGRT RA G+A T + + D++ Sbjct: 296 VLIGTDIISRGIDVENISLVVNYDVPGDPEDYVHRIGRTARAATKGEAITFINEMDMEKF 355 Query: 358 DAIEKLIEKKV 368 + IE LIEK + Sbjct: 356 NRIEALIEKSI 366 >gi|315503693|ref|YP_004082580.1| dead/deah box helicase domain protein [Micromonospora sp. L5] gi|315410312|gb|ADU08429.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5] Length = 553 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 208/363 (57%), Gaps = 2/363 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA LG + V A+ AG + IQ +P+ L+ D+ G A TGTGKT F +P+L Sbjct: 23 FAALGARQETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLER 82 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + +P+ L++ PTREL QVA + + G+ + V + GG+ +E Q + L + Sbjct: 83 VFAPSEGSDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALRK 142 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++L+ TPGR+LD + L ++ + LV+DEADRMLD+GF+ ++ I +++P RQT+ Sbjct: 143 GVEILVGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTM 202 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D + +S FL+ P I + T + + +A K ++ ++LQ+ Sbjct: 203 LFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSLNKVEIVARILQA 262 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + +IF K+ + L+ +GF+V A+HG++ Q +R + L F+ G I +VA Sbjct: 263 EGRGLT-MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVA 321 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ V HV N+D P + Y HRIGRTGRAG G A T V +D+ I+ Sbjct: 322 TDVAARGIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRIID 381 Query: 362 KLI 364 K + Sbjct: 382 KTL 384 >gi|302870034|ref|YP_003838671.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302572893|gb|ADL49095.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca ATCC 27029] Length = 553 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 208/363 (57%), Gaps = 2/363 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA LG + V A+ AG + IQ +P+ L+ D+ G A TGTGKT F +P+L Sbjct: 23 FAALGARQETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLER 82 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + +P+ L++ PTREL QVA + + G+ + V + GG+ +E Q + L + Sbjct: 83 VFAPSEGSDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALRK 142 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++L+ TPGR+LD + L ++ + LV+DEADRMLD+GF+ ++ I +++P RQT+ Sbjct: 143 GVEILVGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTM 202 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D + +S FL+ P I + T + + +A K ++ ++LQ+ Sbjct: 203 LFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSLNKVEIVARILQA 262 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + +IF K+ + L+ +GF+V A+HG++ Q +R + L F+ G I +VA Sbjct: 263 EGRGLT-MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVA 321 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ V HV N+D P + Y HRIGRTGRAG G A T V +D+ I+ Sbjct: 322 TDVAARGIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRIID 381 Query: 362 KLI 364 K + Sbjct: 382 KTL 384 >gi|152995724|ref|YP_001340559.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp. MWYL1] gi|150836648|gb|ABR70624.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1] Length = 448 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 140/390 (35%), Positives = 220/390 (56%), Gaps = 12/390 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + G +++ ++ G+ + T IQ + IP + D+ ++TG+GKT +++LP L Sbjct: 1 MLFEEFGFDNRILKSIGHLGFDEATEIQARAIPEAMAGRDLLASSKTGSGKTLAYLLPAL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + K +A R PR +IL PTRELA QV T L+ GG F Q+K L Sbjct: 61 HRVYKKKALSKRDPRVVILVPTRELAKQVFGQLRLLLAASRFTSILIQGGENFNDQHKSL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF-TR 178 ++ ++ TPGR++DH + + + +E+LV+DEADRMLD+GF ++ I S R Sbjct: 121 QKDPHFIVATPGRLVDHLKQRHVFLEGLELLVLDEADRMLDLGFADAMRAINSAASHRQR 180 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QTL FSAT+ + E+ +++ L+ P R+ + I +H + + + K ALL+ Sbjct: 181 QTLFFSATLDNTEISEIAGELLREPSRVAIGQGFDEHTDISQHVLLCDHLDH--KEALLK 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL Q T+K I+F K + V L + G S A++GN+ Q +R K + +F +G Sbjct: 239 HLLVGQ-TIKQAIVFTATKSDTVRLSEIIAGWGLSTQALNGNLSQSARNKTMESFAKGQF 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++V++D+A+RGLDI V HVFNFD+P +AE ++HR GRTGRAG G A++LV +D + Sbjct: 298 DVLVSTDVASRGLDIASVSHVFNFDLPKQAEEFVHRTGRTGRAGFKGDAYSLVGPKDWVN 357 Query: 357 IDAIEKLIEK-----KVDWLNGDLSSLNPP 381 AIE ++K ++ L L PP Sbjct: 358 FKAIEVFLQKTFTTESIEGLEAKFKGLLPP 387 >gi|159469622|ref|XP_001692962.1| DEAD box RNA helicase [Chlamydomonas reinhardtii] gi|158277764|gb|EDP03531.1| DEAD box RNA helicase [Chlamydomonas reinhardtii] Length = 407 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 132/335 (39%), Positives = 197/335 (58%), Gaps = 7/335 (2%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----EKGRARVRMPRTL 76 +V P+PIQ + P++L D+ GIA TG+GKT F LPML + E G + P + Sbjct: 8 FVAPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRHIAAQREAGVVTGKGPFAV 67 Query: 77 ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136 ++ PTRELA Q+ + E+ G + + GG+P Q + L G +V++ TPGR+ D Sbjct: 68 VMAPTRELALQINEVLEEAGSKCGVRTVCVYGGVPKHPQIQALRSGVEVVVGTPGRMEDL 127 Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196 N G L +N I V+DEADRMLD+GF P+I+ I +L RQTL+FSAT +QK++ Sbjct: 128 LNDGALKLNQITYAVLDEADRMLDLGFEPHIRAIMNLTRADRQTLMFSATWPTAVQKLAV 187 Query: 197 NFLQNPKRIEVNTP--SSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCN 253 FL +P ++ + + +++ +H + +A+ + LLQQ ++ IIF Sbjct: 188 AFLSHPVKVTIGSQDLAASHSITQHVEVIEPHARDGRLLDLLQQYHGAKGRKNRVIIFVL 247 Query: 254 QKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313 KK + L ++G+ AIHG+I Q+ R + FK G + L++A+D+AARGLDIPD Sbjct: 248 YKKEAPRVEQLLTRKGWKAGAIHGDISQQQRTDAVEKFKSGAVPLLIATDVAARGLDIPD 307 Query: 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 V V N+ P E+Y+HRIGRTGRAG+ G A+T Sbjct: 308 VEVVINYSFPLTTEDYVHRIGRTGRAGKTGVAYTF 342 >gi|188995896|ref|YP_001930148.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277] gi|188595576|dbj|BAG34551.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277] Length = 604 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 222/369 (60%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLT 61 F +LG++ + A+ + G+ +P P+Q + IP +L D+ +AQTGTGKTA+F LP+L Sbjct: 4 FEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLPLLQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ R P+ L+L PTREL Q+AD+ Y K ++ + + GG P +AQ + L Sbjct: 64 KIDLSGGR---PQALVLCPTRELCLQIADDLNSYSKYLSDVHILPVYGGTPIDAQIRALR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG +++ TPGR+LD R + +++I +V+DEAD ML+MGF ++ I + +P R Sbjct: 121 RGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILADIPSERHL 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E+ K++ +++++PK I + + I+H + A++ K L+++ Sbjct: 181 LLFSATMPKEISKIAASYMKDPKEIVIGNKNEGNANIKHLYYMVSARH--KYLALKRIAD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + GI+FC +K + L + G++ ++HG++ Q R ++ F+ +QL+V Sbjct: 239 YYPNI-YGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNLQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV +F +P+ E+Y HR GRT RAG+ G + + ++ I I Sbjct: 298 ATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGKIKNI 357 Query: 361 EKLIEKKVD 369 E+ ++K+++ Sbjct: 358 ERTMQKQIE 366 >gi|194367446|ref|YP_002030056.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia R551-3] gi|194350250|gb|ACF53373.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia R551-3] Length = 574 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 222/375 (59%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58 + F+ L P + + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ Sbjct: 9 LTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVV 68 Query: 59 --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +LT + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q Sbjct: 69 NRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQR 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 129 EILQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 TRQTLLFSAT++ + +++ + P+++ V + TA + + +K Sbjct: 189 ERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIY--FPADDEKIP 246 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + + ++F N K V + SLEK G+ V + G++ Q+ R +L+ F++ Sbjct: 247 LLLGLLSRSEGART-MVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQK 305 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I + +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 306 GQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 366 AMGLPDIEAYIEQKI 380 >gi|190576089|ref|YP_001973934.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia K279a] gi|190014011|emb|CAQ47651.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia K279a] Length = 574 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 222/375 (59%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58 + F+ L P + + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ Sbjct: 9 LTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVV 68 Query: 59 --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +LT + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q Sbjct: 69 NRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQR 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 TRQTLLFSAT++ + +++ + P+++ V + TA + + +K Sbjct: 189 ERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIY--FPADDEKIP 246 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + + ++F N K V + SLEK G+ V + G++ Q+ R +L+ F++ Sbjct: 247 LLLGLLSRSEGART-MVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQK 305 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I + +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 306 GQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 366 AMGLPDIEAYIEQKI 380 >gi|52082502|ref|YP_081293.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580] gi|52787898|ref|YP_093727.1| DeaD [Bacillus licheniformis ATCC 14580] gi|52005713|gb|AAU25655.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580] gi|52350400|gb|AAU43034.1| DeaD [Bacillus licheniformis ATCC 14580] Length = 481 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 211/362 (58%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D LS + A+ GY +PT +Q + IP VL++ DV ++TG+GKTA+F +P+ + Sbjct: 6 FRDYALSGDITKALDHLGYKEPTAVQSEVIPAVLKKRDVVVKSRTGSGKTAAFGIPLCEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E + P+ L+L PTRELAAQV ++ G+ + A + G FE Q +L++ Sbjct: 66 TEWEENK---PQALVLTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ PGR+LDH +G L + ++ LVIDEAD ML+MGFI + I +P R T+L Sbjct: 123 CHIVVGPPGRVLDHIEKGTLPLEKLKYLVIDEADEMLNMGFIDQVGAIIRHLPEERLTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++++ +S ++++P +IE+ +T IEH + + +LL L + Sbjct: 183 FSATFPEDVEHLSLQYMKDPLKIEIKAGGTTTADIEHQLI--IVNENDPFSLLVDLFIVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+FC ++ V L L G+ IHG + Q R +++ F+ G + ++A+ Sbjct: 241 NP-DSCIVFCRTQEQVNELQWRLSVLGYPCEKIHGGMPQEDRFAVMNRFRRGAFRYLIAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+++P E+Y+HR GRTGRAG GKA TL + + + I IE Sbjct: 300 DVAARGIDIENITHVINYELPLDQESYVHRTGRTGRAGSRGKAITLASAREKRMIADIED 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|327404226|ref|YP_004345064.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola taffensis DSM 16823] gi|327319734|gb|AEA44226.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM 16823] Length = 379 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 222/382 (58%), Gaps = 7/382 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ GLSP ++ A+ + Y KPTPIQ IP +L DV GIA TG+GKTAS+VLP+L Sbjct: 1 MSFSSFGLSPFLLQALTEMTYEKPTPIQELAIPAILTGKDVLGIAPTGSGKTASYVLPVL 60 Query: 61 TILEK-GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNK 117 L K +A+ R ++LIL PTRELA QV + F+ + L V + GG+ Q K Sbjct: 61 AQLSKVEKAKNRHIQSLILVPTRELAIQVEEVFKSFAHKLPEPLKVKAVYGGVSINPQMK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + G +LI TPGR+++ + ++ ++ LV+DEAD++L++ F ++ I S +P Sbjct: 121 AM-MGVSILIATPGRLIELAESNAIHLSTLKSLVLDEADKLLNLDFQEEMKRILSWIPKK 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ LLFSAT+ D++ ++++ L P +++ + E I+ A +K LL+ Sbjct: 180 RQNLLFSATLNDKVSEITQLILHEPIVLKIENEEDSVELIQQT--AYRVSDERKGPLLRY 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++S++ MK +IF + + L K AIH Q +R K+L NFK G ++ Sbjct: 238 LIRSRN-MKQVLIFTSSTFKADQVVEKLRKNNIDAQAIHSKKSQDARNKVLRNFKAGHLK 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+DL +RG+DI + V N+++P ++Y+HRIGRTGRA G+A T V ED H Sbjct: 297 VLVATDLISRGIDIEFLPFVINYELPRSPKDYVHRIGRTGRAESTGEALTFVTPEDEHHF 356 Query: 358 DAIEKLIEKKVDWLNGDLSSLN 379 I+K + K+V + D LN Sbjct: 357 KIIQKKMGKQVPFEETDGLDLN 378 >gi|296813451|ref|XP_002847063.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480] gi|238842319|gb|EEQ31981.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480] Length = 417 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 208/356 (58%), Gaps = 12/356 (3%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRARVRMP 73 G+VKPTPIQ + P+ L DV GIA+TG+GKT ++ LP + +L G P Sbjct: 8 GFVKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG----P 63 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 L+L PTRELA Q+ K+GK+ + + GG+P Q + L RG +V I TPGR+ Sbjct: 64 IVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLTRGVEVCIATPGRL 123 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQK 193 +D G+ + + LV+DEADRMLDMGF P I+ I + RQT ++SAT ++++ Sbjct: 124 IDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKDVRQ 183 Query: 194 VSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI-IFC 252 ++ +FLQ+ ++ + + +A V +++ K+ +++ L + + K+ + IF Sbjct: 184 LANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLERIMEDKKSKVLIFT 243 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 K+ ++ L + G+ +IHG+ Q R +L+ FK G +MVA+D+A+RG+D+ Sbjct: 244 GTKRVADDITRFLRQDGWPALSIHGDKQQSERDWVLNEFKSGKSPIMVATDVASRGIDVR 303 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKK 367 D+ HV N D PN +E+Y+HRIGRTGRAG +G A T+ E+ K D ++ L E K Sbjct: 304 DITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITMFTTENAKQARDLVKILTESK 359 >gi|309778667|ref|ZP_07673444.1| ATP-independent RNA helicase DbpA [Ralstonia sp. 5_7_47FAA] gi|308922582|gb|EFP68202.1| ATP-independent RNA helicase DbpA [Ralstonia sp. 5_7_47FAA] Length = 471 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 223/392 (56%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P V+ + GY TPIQ ++P+ L HD+ A+TG+GKTA+F L +L Sbjct: 16 FSTLALAPAVLTNLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAR 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ V+ ++L PTRELA QVA + + N+ V L GG P Q LE Sbjct: 76 LDARSFDVQ---AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEH 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA V++ TPGRI+DH RG L + ++ LV+DEADRMLDMGF I + P RQTL Sbjct: 133 GAHVIVGTPGRIMDHLERGNLGLGALKTLVLDEADRMLDMGFFDDIATVVRQCPADRQTL 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + K+S+ L+NPK +++ ++ + + T +Q + + QLL+ Sbjct: 193 LFSATYPEGIAKLSQRILRNPKEVKLEERHDDSKIRQRFYEVTDSQ---RLHAVGQLLRH 249 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + FCN K+ +L L QG A+HG ++QR R ++L F + ++VA Sbjct: 250 YRPVST-LAFCNTKQQCRDLLDVLRAQGIHALALHGELEQRERDQVLIQFANRSCSVLVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI + V N DV E ++HRIGRTGRA +G A +L + +++ + IE Sbjct: 309 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADENGWALSLASMDEMGRVGNIE 368 Query: 362 KLIEKKVDWL------NGDLSSLNPPLEKIDI 387 + + ++V+W G+ + L PP+E + I Sbjct: 369 QALGREVEWHKLDELDTGNDAPLLPPMETLQI 400 >gi|242069203|ref|XP_002449878.1| hypothetical protein SORBIDRAFT_05g024780 [Sorghum bicolor] gi|241935721|gb|EES08866.1| hypothetical protein SORBIDRAFT_05g024780 [Sorghum bicolor] Length = 688 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 134/371 (36%), Positives = 213/371 (57%), Gaps = 28/371 (7%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE--- 64 L K++ AV +AGY KP+PIQ+ IPL LQ+ D +A+TG+GKTA+F LP+L+ + Sbjct: 280 LGAKLLRAVDEAGYRKPSPIQMAAIPLGLQQRDAIAVAETGSGKTAAFALPLLSYVAGLP 339 Query: 65 --KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKL 119 R P L++ PTREL+ Q+A+ + + + V + GG Q++++ Sbjct: 340 PITDENRHDGPYALVMVPTRELSEQIAEETARLARYLGVRVVPVFGGGSEKTIAEQSERI 399 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-- 177 ++G +V++ TPGR+LD R +++N +V+DEADRM+DMGF P + ++ +++P + Sbjct: 400 QKGCEVVVATPGRLLDLLERRYVVLNQCNYVVLDEADRMIDMGFEPQVASVLAVMPSSNL 459 Query: 178 ---------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222 R T +FSATM +++++ +L+NP + + TP E I + Sbjct: 460 KPQNEDEELDEKKVYRTTFMFSATMPPAVERLARTYLRNPVVVTIGTPGKATELITQNVM 519 Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 + S+K L +LL+ K I+FCN KK + L+ GF V A+HGN+ Q Sbjct: 520 ML--KESEKMPQLHRLLRDLRD-KTVIVFCNTKKTTDWCFNELKNAGFGVTALHGNLTQA 576 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R L F+ ++VAS++AARG++IPDV HV N+D+P+ YIH IGRTGRAG+ Sbjct: 577 ERKASLDGFRNRQFNVLVASEVAARGINIPDVAHVINYDMPSSINKYIHCIGRTGRAGKK 636 Query: 343 GKAFTLVAKED 353 G A + + E+ Sbjct: 637 GVATSFLTLEN 647 >gi|329954895|ref|ZP_08295912.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056] gi|328526999|gb|EGF54010.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056] Length = 499 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 222/371 (59%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ K+IP++L+ D+ +AQTGTGKTA+++LP+L Sbjct: 65 MKFSELKLNDNVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 124 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +++ PTRELA Q+ E + ++ + GG + FE Q + Sbjct: 125 NKLSEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKR 184 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 185 GLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYLPKE 244 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++++ L +P +++ + ++ +V Q K +++ Sbjct: 245 RQTIMFSATMPAKIQQLAQSILNDPAEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIRS 301 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q T + IIF + K V + +L++ +V +H +++Q R +++ FK G + Sbjct: 302 LFAEQ-TPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRVN 360 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA G A T V +++ + Sbjct: 361 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 420 Query: 358 DAIEKLIEKKV 368 IE +EK++ Sbjct: 421 KGIENFLEKEI 431 >gi|326934003|ref|XP_003213086.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Meleagris gallopavo] Length = 944 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 138/395 (34%), Positives = 223/395 (56%), Gaps = 22/395 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ + D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + V + K L Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQ-IVEIFPSGPSKWNWLT 489 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L + + ++F +K N L ++L+++ ++ +HG++DQ R K++S FK+ I Sbjct: 490 RRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNF 609 Query: 354 ----IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 +++++ + + K++ DL+ NP K Sbjct: 610 AGDLVRNLEGANQHVSKELL----DLAMQNPWFRK 640 >gi|170576579|ref|XP_001893687.1| RNA-dependent helicase [Brugia malayi] gi|158600176|gb|EDP37484.1| RNA-dependent helicase, putative [Brugia malayi] Length = 553 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 212/371 (57%), Gaps = 8/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 DF + G P+V+ +L A + KPT IQ + P+ L D+ IA+TG+GKT +F+LP + Sbjct: 129 FDFKEAGF-PQVLTDMLFANFQKPTVIQSISWPIALSGRDMVSIAKTGSGKTFAFILPAI 187 Query: 61 --TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 TI + R + P L+L PTRELA QV + + Y + +L++ L GG P Q + Sbjct: 188 VHTINQPPRGHQKSPSVLVLLPTRELAQQVEEVAKDYCRATDLSITCLFGGAPKATQARD 247 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERG D++I TPGR++D GK + LV+DEADRMLDMGF P I+ + S + R Sbjct: 248 LERGVDIIIATPGRLMDFLEIGKTDLRRCTYLVLDEADRMLDMGFEPQIRKVVSQIRPDR 307 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALL 235 QTL+FSAT +++K++ +FL + + V + +A V + +K+ A+L Sbjct: 308 QTLMFSATWPKDVRKLAMDFLTDAAHLNVGSLELSANHNITQIVEIIDESNKQQRLMAIL 367 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 ++ +D IIF K+ +L + + G+ IHG+ Q R LS F+ G Sbjct: 368 SDIMNKEDC--KTIIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALSEFRSGK 425 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +++A+D+AARGLD+ D+ +V NFD N +E+Y+HRIGRTGR + G A+T + Sbjct: 426 TPILLATDVAARGLDVDDIKYVINFDYSNNSEDYVHRIGRTGRRDKTGVAYTFFTYANAP 485 Query: 356 HIDAIEKLIEK 366 + K++E+ Sbjct: 486 KAKDLIKVLEE 496 >gi|170040294|ref|XP_001847939.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] gi|167863866|gb|EDS27249.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] Length = 818 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 212/379 (55%), Gaps = 41/379 (10%) Query: 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI------ 62 PK V ++D GY +PTPIQ + IP+ LQ D+ GIA+TG+GKT +F++P+L Sbjct: 398 PKEVLEIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLNWIQGLPK 457 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +E+ + P +IL PTRELA Q+ + +K+G+ + +++GG+ E Q +L G Sbjct: 458 IERQETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRLG 517 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P T Sbjct: 518 CEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKPD 577 Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRI---EVNTPSSTA 214 RQT++F+ATM +++++ +L+ P + V P+ Sbjct: 578 TEEAEDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 637 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 E I H + T + KK L ++L S+ IIF NQKK L LEK G++ C Sbjct: 638 EQIVH--IVTENEKRKK---LMEIL-SRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACT 691 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG Q R L++ K G+ ++VA+D+A RG+DI DV V N+D+ E+Y HRIG Sbjct: 692 LHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIG 751 Query: 335 RTGRAGRHGKAFTLVAKED 353 RTGRAG+ G A + K+D Sbjct: 752 RTGRAGKTGCAISFCTKDD 770 >gi|290476142|ref|YP_003469042.1| ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004] gi|289175475|emb|CBJ82278.1| ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004] Length = 447 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 135/354 (38%), Positives = 200/354 (56%), Gaps = 4/354 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++ L ++ A+ + GY +PT IQ + IP + DV G A TGTGKTA+++LP+L Sbjct: 5 NFSEFELDECLLNALNEKGYERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPVLQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L+ R + PR LIL PTRELA QVA+ + + + NL VA + GG+ + + Sbjct: 65 HLLDFPRKKSGPPRILILTPTRELAMQVAEQAQSFAAHTNLDVATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D+++ T GR+L + +E L++DEADRMLDMGF ++ I + +QT Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDVETIAGETRWRKQT 184 Query: 181 LLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ E ++ +E L +P I+ + I+ F K ALL LL Sbjct: 185 LLFSATLEGETIRDFAERLLTDPVEIDAEPSRRERKKIQQ-FYYRADNLEHKTALLCHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q D K+ I+F +++ V + L K G C + G + Q R + +G + +M Sbjct: 244 QQPDVTKS-IVFVRKRERVREIVDYLHKAGIQACFLEGEMVQTKRTDAVKRLNDGRVNVM 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+A+RGLDI ++ HVFNFD+P A+ Y+HRIGRT RAGR G A LV D Sbjct: 303 VATDVASRGLDIENISHVFNFDLPRTADVYLHRIGRTARAGRKGTAIALVESHD 356 >gi|302823844|ref|XP_002993570.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii] gi|300138582|gb|EFJ05345.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii] Length = 434 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 209/363 (57%), Gaps = 7/363 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +LG+ ++V A G+ PTPIQ++ +PL LQ D+ G+AQTG+GKTA+F LP+L Sbjct: 10 FGELGVREELVDACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQA 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + +L PTRELA Q+++ FE G + ++GG+ Q L + Sbjct: 70 LFQ---QCHPFFACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKN 126 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR+LDH K + N++ LV+DEAD++L F + I +VP R+T Sbjct: 127 PHIVVATPGRLLDHLTNTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKTF 186 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT+++ K+ L+NP ++EV++ +TA T++ +V A++ K C + L + Sbjct: 187 LFSATMTNKVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKH-KDCYFV--FLLN 243 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++F + L L GF I G + Q R L FK G L++ Sbjct: 244 EMAGSTAMVFTRTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLIC 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G+A ++V + D+ IE Sbjct: 304 TDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGRAISIVTQYDVDLYKRIE 363 Query: 362 KLI 364 LI Sbjct: 364 DLI 366 >gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299] gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299] Length = 605 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 207/365 (56%), Gaps = 6/365 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +L LS +V A GY PTPIQ +PL L D+CG A TG+GKTA+F+LP L Sbjct: 151 NFTELNLSRPLVKACGALGYASPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPCLE 210 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +L +G V L+L PTRELA QV E+ + ++ AL++GG+ Q L Sbjct: 211 RMLHRGPKPVAATHVLVLVPTRELAVQVHQMTERLAQFTSVRAALVVGGLSANVQATSLR 270 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +V++ TPGR++DH N + + ++ LV+DEADR+L+MGF+ I+ I P RQ Sbjct: 271 SRPEVVVATPGRLIDHVRNTHSVGLEDLATLVLDEADRLLEMGFLEEIREIVRHCPKRRQ 330 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQ 237 T+LFSAT+T +++++E ++NP R+ + +T T+ E + A K+ LL Sbjct: 331 TMLFSATLTSGVEELAEFSMKNPARLSADQIGTTPGTLTEEVLRLRPGAAAMKEAHLLA- 389 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + ++ K IIF K+ L + G C +HG++ Q R+ L F+ G Sbjct: 390 -IVARTFTKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLAALEEFRTGEAT 448 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 MVA+D+AARGLDI V V ++D P +Y+HR+GRT RAGR G A T + + D K I Sbjct: 449 HMVATDVAARGLDIAGVDAVVSYDAPRTLASYLHRVGRTARAGRKGTALTFMEESDRKLI 508 Query: 358 DAIEK 362 A+ K Sbjct: 509 KAVSK 513 >gi|194752113|ref|XP_001958367.1| GF10884 [Drosophila ananassae] gi|190625649|gb|EDV41173.1| GF10884 [Drosophila ananassae] Length = 822 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 213/373 (57%), Gaps = 12/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F + G V+ + G+ KPT IQ + P+ + D+ G+AQTG+GKT ++VLP + Sbjct: 151 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 210 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L+L PTRELA Q+ ++G N ++ + GG P Sbjct: 211 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 266 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 267 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 326 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ L++SAT E+++++E FL N ++ + + S +A V + K L Sbjct: 327 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 386 Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 ++ L S + IIF KK V + ++ +QG+ CAIHG+ Q+ R +LS+F+ Sbjct: 387 VKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 446 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL + Sbjct: 447 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNRGTAYTLFTHSN 506 Query: 354 I-KHIDAIEKLIE 365 K D I+ L E Sbjct: 507 ANKANDLIQVLRE 519 >gi|269987038|gb|EEZ93313.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 435 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 142/416 (34%), Positives = 231/416 (55%), Gaps = 18/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + L +++ A+ + + +PT +Q + IPL L+ DV ++TG+GKTA+FV+P+L Sbjct: 2 FDSMNLRKEILTALHEMKFEEPTEVQKQAIPLELEGKDVVVKSKTGSGKTAAFVIPILNS 61 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 +EK + M I+ PTRELA QV + + G++ L + GG Q +++ G Sbjct: 62 IEKNERQAAM----IITPTRELALQVTEVVREIGRHMQLKAVTIYGGASINYQIREIRNG 117 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A+++I TPGR++D R +L ++I LV+DE D MLDMGFI I+ I S +P RQT+ Sbjct: 118 ANIIIGTPGRLIDLMKRRELNTDSIRFLVLDEVDIMLDMGFIDDIKYILSKLPKKRQTMF 177 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +E++ ++ N+ NP + ++ T TI+H + + A S K A L L + Sbjct: 178 FSATIPEEIKHITLNYTNNPINVNIDAGEVTVNTIQHFY--SIASGSDKFATLLAYLNEK 235 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 K IIFC ++N + ++ G +HG + Q R L+ FKEG + +++A+ Sbjct: 236 KPEK-AIIFCKTQRNAEKIHSIMQNMGMQAVLMHGGLSQNRREHSLNMFKEG-VNMLIAT 293 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 ++AARGLDI +V + NFD + Y+HR+GR+ R G+ GKAFT+ + + IE Sbjct: 294 NVAARGLDIDNVSDIINFDAETDPKAYVHRVGRSARMGKSGKAFTIFTHGEKYLVYEIEN 353 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKS 418 + K+ +L DLS+ + N K N + T R+ N+SS ++ Sbjct: 354 YAKVKLSYLEFDLSTYRTKM--------NEFYKENGKQEFETAL--RRSNFSSNRN 399 >gi|71896321|ref|NP_001026097.1| ATP-dependent RNA helicase DDX42 [Gallus gallus] gi|82194905|sp|Q5F485|DDX42_CHICK RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD box protein 42 gi|60098437|emb|CAH65049.1| hypothetical protein RCJMB04_2e15 [Gallus gallus] Length = 944 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 138/395 (34%), Positives = 223/395 (56%), Gaps = 22/395 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FA G +++ + + Y +PTPIQ + +P+ + D+ GIA+TG+GKTA+F+ PML Sbjct: 255 FARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIH 314 Query: 61 ----TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ +++GK YNL + GG Q Sbjct: 315 IMDQKELEPGDG----PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++DH + + + LV DEADRM DMGF +++I S V Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT +++K++ + L +P R+ E + V + K L Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQ-IVEIFPSGPSKWNWLT 489 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L + + ++F +K N L ++L+++ ++ +HG++DQ R K++S FK+ I Sbjct: 490 RRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGI 549 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED--- 353 ++VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ +D Sbjct: 550 PILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNF 609 Query: 354 ----IKHIDAIEKLIEKKVDWLNGDLSSLNPPLEK 384 +++++ + + K++ DL+ NP K Sbjct: 610 AGDLVRNLEGANQHVSKELL----DLAMQNPWFRK 640 >gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum] gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum] Length = 434 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 219/371 (59%), Gaps = 9/371 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F LG+ P+++ A +G+ KP IQ +TIP L+ D+ G+AQTG+GKT +FV+P+L Sbjct: 10 VTFESLGVHPQIIDACYRSGFKKPKEIQRETIPWALKGRDIIGLAQTGSGKTGAFVIPVL 69 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +LE+ + L + PTRELA Q+A+ F G + +L+GGI Q+ +L Sbjct: 70 QKLLEQPQGIF----CLCIAPTRELAFQIAEQFNALGATIGVKTCVLVGGIDSMTQSLQL 125 Query: 120 ERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + ++I +PGRI+ H K + +I+ ++DEADR+ F + NI ++P R Sbjct: 126 AKKPHIIIGSPGRIIFHLENTKGFNLRSIKYFIMDEADRLFGADFEEEVNNILKVIPKER 185 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATMT ++ K+ L NP +I+V T T +T+ ++ +Y K+C L+ L Sbjct: 186 NTFLFSATMTSKVAKLQRASLVNPVKIQVATKYQTVDTLIQQYLFIPFKY-KECYLVYIL 244 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + + IIF + + + L G + I+G++DQ R+ LS FK+GT + Sbjct: 245 NELAGNLT--IIFTSTCASSNKVTLMLRNLGLAAIPINGDMDQAKRLASLSKFKQGTKSI 302 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP V V N+DVP ++ YIHR+GRT RAG G+A TLV + D++ Sbjct: 303 LVATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRTARAGNSGRAITLVTQYDVEMYQ 362 Query: 359 AIEKLIEKKVD 369 IE +++KK+D Sbjct: 363 RIEFVLKKKLD 373 >gi|320530074|ref|ZP_08031144.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399] gi|320137507|gb|EFW29419.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399] Length = 423 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 214/370 (57%), Gaps = 10/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA++G+S + + + G PTP+Q + +P + DV AQTGTGKT +F+LP Sbjct: 2 MPFAEIGVSEALCTLLKNRGISVPTPVQERAVPAMRAGRDVIAQAQTGTGKTLAFLLP-- 59 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +LEK + + + + L++ PTRELA Q+A E ++ L+ GG E Q +KL Sbjct: 60 -VLEKIKPQGAVVQALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R ++I TPGR+LDH RG L + ++ +V+DEAD ML +GFI ++ + Q Sbjct: 119 RHPQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDYQL 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YSKKCALLQQL 238 LFSATM + + ++++ F+ NP RI++ +T E IE ++ + + CA + Sbjct: 179 ALFSATMPERIVQLTKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCASI--- 235 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ ++FC K+ L +L +G+ V A+ GN+ Q R +L F+ +Q+ Sbjct: 236 --NEEAPYLAMVFCATKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQI 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 + A+D+AARGLDI V HV+N+D+P +YIHRIGRTGRAG G+A TLV + + Sbjct: 294 LCATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLR 353 Query: 359 AIEKLIEKKV 368 IE +++++ Sbjct: 354 KIESALKERL 363 >gi|330808146|ref|YP_004352608.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376254|gb|AEA67604.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 448 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 215/370 (58%), Gaps = 7/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ +TLIL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+++ N G L + +E+LV+DEADRMLDMGF +Q + +QT+ Sbjct: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTM 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT L+++ L NP+ +++N S + T + A + Q+ ++ L Sbjct: 181 LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIV---NWL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +T + I+F N + + L Q + +HG DQ+ R + K+G ++++ Sbjct: 238 LANETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLD+ + V NFD+P + Y+HRIGRTGRAG G A +L+ D + + Sbjct: 298 VATDVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSS 357 Query: 360 IEKLIEKKVD 369 IE+ +++ + Sbjct: 358 IERYLKQSFE 367 >gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis] gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis] Length = 518 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 69 LTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 128 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 129 HALLESPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 185 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 186 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 245 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T E ++ ++ +Y K L +L Sbjct: 246 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 303 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 304 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 362 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T+V++ DI+ Sbjct: 363 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQR 422 Query: 360 IEKLIEKKV 368 IE L+ K++ Sbjct: 423 IEHLLGKQL 431 >gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura] gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura] Length = 518 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 69 LTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 128 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 129 HALLESPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 185 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 186 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 245 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T E ++ ++ +Y K L +L Sbjct: 246 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 303 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 304 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 362 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T+V++ DI+ Sbjct: 363 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQR 422 Query: 360 IEKLIEKKV 368 IE L+ K++ Sbjct: 423 IEHLLGKQL 431 >gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str. Silveira] Length = 474 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 219/376 (58%), Gaps = 22/376 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ + A GY PT IQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 50 FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 107 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P++ L+L PTRELA Q++ FE G ++ A+++GG+ +Q L Sbjct: 108 ----QALMDKPQSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIAL 163 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + +++ LV+DEADR+LD+ F P + I ++P R Sbjct: 164 GKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKER 223 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +T LFSATM+ +++ + L NP R+ V N + + +++C + + L Sbjct: 224 RTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLL 283 Query: 237 QLLQSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 Q I+F N+ + + NL +L GF +HG + Q +R+ L F+ Sbjct: 284 NEFPGQSV----IVFTRTVNETQRLANLLRAL---GFGAIPLHGQLSQSARLGALGKFRS 336 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 + ++VA+D+AARGLDIP V V N+D+P+ ++ YIHR+GRT RAG+ G+AF+LV + D Sbjct: 337 RSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYD 396 Query: 354 IKHIDAIEKLIEKKVD 369 ++ IE + K++D Sbjct: 397 VEIWQRIEAALGKELD 412 >gi|154249323|ref|YP_001410148.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153259|gb|ABS60491.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum Rt17-B1] Length = 571 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 141/404 (34%), Positives = 222/404 (54%), Gaps = 8/404 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F D GLS +++ A+ GY KPT IQ +P L D+ AQTGTGKTA+F +P+L Sbjct: 20 FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ +A + + +I+ PTRELA Q+ + + + + L GG E Q K LE+ Sbjct: 80 RID-FKAN-KFVKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKDLEK 137 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGRI+DH NR L ++++E LV+DEADRMLDMGF+ + I ++T Sbjct: 138 GVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTF 197 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM E+ ++ F++ + T E E + K LL +++ Sbjct: 198 LFSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFE--VDEKDKLPLLCRIIDM 255 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 GI+FC K V + L G++ +HG+ Q R ++L F++ ++++V Sbjct: 256 NPDF-YGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVT 314 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI + HV N+ VP E Y+HRIGRTGRAG+ G A T V ++D H ++ Sbjct: 315 TDVAARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVK 374 Query: 362 KLIEKKV--DWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403 + + K+ D + LN LEK+ N + +N + +++ Sbjct: 375 RFAKAKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSNELYKRA 418 >gi|303238460|ref|ZP_07324994.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] gi|302593858|gb|EFL63572.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] Length = 481 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 218/370 (58%), Gaps = 12/370 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS +++ A+ Y PT +Q IP VL+ DV +QTG+GKTA+F +P+ + Sbjct: 6 FENYKLSSELLKAIDMLNYKSPTKVQEMVIPAVLEHKDVIVKSQTGSGKTAAFAIPICDL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + P+ L++ PTRELA QV ++ G+ L V+ + G F Q K+L++ Sbjct: 66 VDWDENK---PQVLVITPTRELAIQVKEDIFNLGRFKRLKVSAIYGRSSFYNQEKELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V++ TPGRI+DH RG + I+ L+IDEAD ML MGF+ I++I +P R T+L Sbjct: 123 THVVVGTPGRIIDHLERGTFDTSKIKYLIIDEADEMLSMGFVEQIEDIIGKLPDERTTIL 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SAT+ ++ + + +++NP E+ + + I V + + L LL+ Sbjct: 183 LSATLPKDIAVLCDKYMKNPVYAEIEEENKAIDRI----VQERYEVDENDKL--NLLRDI 236 Query: 243 DTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 T++N IIFC+ K L L K ++ IHG ++Q R++++++FK+G + + Sbjct: 237 TTLENPDSCIIFCSTKIKTDELFDELAKLNYTCEKIHGGMEQSDRLRVMNDFKQGYFRYL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI D+ V N+D+P E+Y+HRIGRTGR R+GKA T V ++ K++D Sbjct: 297 VATDVAARGIDIDDISLVINYDIPQDKESYVHRIGRTGRVDRNGKAITFVTPDESKYLDD 356 Query: 360 IEKLIEKKVD 369 I K I K+++ Sbjct: 357 IHKYIGKEIE 366 >gi|226306587|ref|YP_002766547.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] gi|229493625|ref|ZP_04387410.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121] gi|226185704|dbj|BAH33808.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] gi|229319586|gb|EEN85422.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121] Length = 500 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 200/364 (54%), Gaps = 8/364 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ +V A+ +G P PIQ TIP VL DV G TG+GKT +F LPML Sbjct: 17 FVDLGIPAVMVHALRRSGIDAPFPIQSATIPDVLAGRDVLGRGATGSGKTLAFGLPMLVR 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ G ++ PR L+L PTRELA Q+ + L VA +GG+P + Q L RG Sbjct: 77 LKGGASKRNRPRGLVLAPTRELAIQIHKALDDAATEIGLRVANAVGGVPIKRQADILARG 136 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+LI TPGR+LD + ++++++ I IDEAD M DMGFI + I P Q LL Sbjct: 137 VDLLIATPGRLLDLLEQKSVILDDVVITTIDEADHMADMGFIDEVAKILDTTPKDGQRLL 196 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++ + +L+NP P +T T+EH + + K +++ + Sbjct: 197 FSATLDGKVDDLVAGYLRNPASHSTAPPVATVSTMEHHLL--FVDRDDKRSVVAHIASRA 254 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 I+F K V L L G S A+HG Q +R K L++F +GT ++VA+ Sbjct: 255 GRT---IMFVKTKHGVDRLAQQLHLIGVSAGALHGGKTQNNRTKTLASFSDGTTPVLVAT 311 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+ + DV V + D P A++Y+HR GRT RAG G T+V E+ D++EK Sbjct: 312 DVAARGIHVDDVTLVVHVDPPAEAKDYLHRAGRTARAGESGVVVTIVTDEE---RDSVEK 368 Query: 363 LIEK 366 L ++ Sbjct: 369 LTKQ 372 >gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens] gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens] Length = 582 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 212/371 (57%), Gaps = 9/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D+ L ++ V Y PTPIQ + +P+ L D+ G A+TG+GKTA+F LPM+ Sbjct: 137 FEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQH 196 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + + R P L+L PTRELA Q+ + + ++ A+++GG Q +L Sbjct: 197 CLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFCRSAEGFRTAIVVGGTNIYEQRSEL 256 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G ++++ TPGR +DH +G ++ + +V+DEADRMLDMGF P I+ + +P Q Sbjct: 257 RAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQ 316 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSS-TAETIEHCFVATYAQ--YSKKCALLQ 236 TLLFSATM +E++ +++ +L NP R++V SS TA ++ T + S L+ Sbjct: 317 TLLFSATMPEEIEALAQEYLDNPIRVKVGRVSSPTANVTQNLEKITEKEKIESLLALLVD 376 Query: 237 QLLQSQDTMKN---GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 + QS DT + I+F +K + +L +QG A+HG Q R L +F++ Sbjct: 377 EHSQSLDTNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRK 436 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GT ++VA+D+A+RGLD+ V HV N D+P E+Y+HRIGRTGRAG G+A + + D Sbjct: 437 GTTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTERD 496 Query: 354 IKHIDAIEKLI 364 + + I + I Sbjct: 497 MFLVAQIRRAI 507 >gi|50954624|ref|YP_061912.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951106|gb|AAT88807.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 491 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 213/368 (57%), Gaps = 9/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L + +V A+ G +P PIQ +TIPL L D+ G A+TGTGKT F LP++ Sbjct: 1 MTFSELNIDQDMVDALAAKGITEPFPIQTQTIPLALTGQDIIGQAKTGTGKTFGFGLPII 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L G + L++ PTRELA QV ++ E+ N ++A + GG +E Q +L+ Sbjct: 61 QRL--GADPEPGVQALVVVPTRELAVQVYEDLEQAASNRPTSIAAIYGGKAYEGQIAQLK 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA V++ TPGR+LD + L ++ + +V+DEAD+MLD+GF+ I+ + + P TR T Sbjct: 119 AGAQVVVGTPGRLLDLAGQRLLNLSTVREMVLDEADKMLDLGFLSDIEKLFAQTPATRHT 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYS-KKCALLQQ 237 +LFSATM + ++ F+ P I P I+H Y +S K ++ + Sbjct: 179 MLFSATMPGPIVALARRFMTRPIHIRATDPDEGQIQANIKHLV---YRAHSLDKDEVVAR 235 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +LQS+ K +IF K++ L L +GF+ A+HG+++Q R + ++ FK G Sbjct: 236 ILQSEGRGKT-VIFTRTKRSAAKLMEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKD 294 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+D+ DV HV N +P+ + Y+HR GRTGRAG+ G A T V ED+ Sbjct: 295 VLIATDVAARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAGKSGIAVTFVDWEDLHKW 354 Query: 358 DAIEKLIE 365 I + +E Sbjct: 355 ALINRALE 362 >gi|296273792|ref|YP_003656423.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097966|gb|ADG93916.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM 7299] Length = 434 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 219/381 (57%), Gaps = 7/381 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ L +++ A+ + GY KPT +Q K IP++L+ DV AQ+GTGKTA+FVLP+L Sbjct: 4 FNNIKLCSEILKALEEEGYEKPTEVQEKVIPVLLKNSDVIATAQSGTGKTAAFVLPILQK 63 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + R+ R+LIL PTRELA Q+ + YG+ ++ +++GG+ + Q +K Sbjct: 64 LFETQDNDSTNKRVLRSLILVPTRELAKQIEKSISHYGRYLDIKQTIVVGGLSHKEQIRK 123 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + G DVL+ TPGR++DH + +++I +V+DEAD ML+MGF+ I+ I S TR Sbjct: 124 INAGIDVLVATPGRLIDHIKTKSVNLSSINNIVLDEADTMLEMGFLKDIELIFSQCAKTR 183 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 +FSAT+ ++K+++ FL P IEV++ S + IE KK L L Sbjct: 184 HIGMFSATINQNIKKLAKEFLHKPVVIEVSSQRSAVDIIEQQIY--LMDEDKKIEFLSYL 241 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S++ + ++F N K + G IHG+I Q R + L FK ++++ Sbjct: 242 IGSEN-WEQVLVFVNTKAKADEITEQFNLDGLKTACIHGDIKQPVRARALEGFKSKSLRV 300 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + +V NF++P +Y HRIGRTGRAG G A TL+ ++ + Sbjct: 301 LVATDIAARGIDIELLPNVVNFELPETTVDYTHRIGRTGRAGNPGVATTLLCVKEYVQMA 360 Query: 359 AIEKLIEKKVDWLNGDLSSLN 379 IEK + + L D LN Sbjct: 361 EIEKELIINIPRLTHDEYELN 381 >gi|327481375|gb|AEA84685.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri DSM 4166] Length = 443 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L +++ AV + +V+PTP+Q+ IP L+ D+ AQTG+GKTA+FVLPML Sbjct: 2 FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+ R+ R LIL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGDAQPRVDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DVLI TPGR+++H N G L++ ++E+LVIDEADRMLDMGF +Q + +QTL Sbjct: 121 VPDVLIGTPGRLIEHLNAGNLILKDVEVLVIDEADRMLDMGFAEDMQRLVGECEKRQQTL 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L +P +++N S E+ + T + K L+ LL Sbjct: 181 LFSATSGGAGLREMVAKVLNDPLHLQLNRVSELNESTRQQII-TADDPAHKEKLVHWLL- 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T + +IF N + L L V +HG DQ+ R + K+G ++++V Sbjct: 239 ANETYQKAVIFTNTRAQADRLYGHLVAGDIKVFVLHGEKDQKERKLAIERLKQGGVKVLV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI + V NFD+P + Y+HRIGRTGRAG G A +L+ D + +I Sbjct: 299 ATDVAARGLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSI 358 Query: 361 EKLIEKKVD 369 E+ ++++ + Sbjct: 359 ERYLKQRFE 367 >gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3] gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3] Length = 649 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 207/371 (55%), Gaps = 8/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 FA+LG+ + V A+ +AG V PIQ T+PL L R+D+ G A+TGTGKT +F +P++ T Sbjct: 87 FAELGVRAETVSALTEAGIVHAFPIQELTLPLALARNDIIGQARTGTGKTLAFGVPVVQT 146 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L P+ L++ PTREL QV + + G L V + GG +E Q L Sbjct: 147 VLAAKEGADGRPQALVVVPTRELCVQVTADVTRAGARRGLRVLSVYGGRAYEPQLSALRA 206 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR+LD + L + + LV+DEAD MLD+GF+P ++ I S +P RQT+ Sbjct: 207 GVDIVVGTPGRLLDLARQHVLDLAGVGTLVLDEADEMLDLGFLPDVERIMSQLPTERQTM 266 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQQL 238 LFSATM + ++ F++ P + P + T +H F A K +L ++ Sbjct: 267 LFSATMPGPVISLARRFMKRPVHVRAEQPDEGRTVPTTRQHVF---RAHALDKMEVLARV 323 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ ++F ++ + L K+GF+ A+HG++ Q R + L F+ G + + Sbjct: 324 LQAGG-RGLAMVFVRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVDV 382 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI V HV N+ P Y+HRIGRTGRAG G A T V +D+ Sbjct: 383 LVATDVAARGIDINGVTHVVNYQCPEDENVYLHRIGRTGRAGESGVAITFVDWDDLPRWT 442 Query: 359 AIEKLIEKKVD 369 + K + D Sbjct: 443 LVNKALALPFD 453 >gi|332653730|ref|ZP_08419474.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16] gi|332516816|gb|EGJ46421.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16] Length = 391 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 138/349 (39%), Positives = 204/349 (58%), Gaps = 7/349 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +ADLGLSP+++ A+ GYV+ TP+Q +IP ++ DV A TGTGKT +F +PM+ Sbjct: 14 YADLGLSPELMRAIDKKGYVQATPVQGGSIPYFMEYKDVIAKAPTGTGKTFAFGIPMVEH 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKY-GKNYNLTVALLIGGIPFEAQNKKLER 121 ++ R + L+L PTRELA Q+ D + L GG P + Q +L++ Sbjct: 74 ID---PESRDVQGLVLAPTRELAIQIRDELRDLCAFKEGVRTVCLYGGQPIDKQITQLKK 130 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGR++DH R + ++ ++ +V+DEADRMLDMGFI + I L+P R Sbjct: 131 DPQIVVATPGRLMDHVKRRTVRLDKVQTVVLDEADRMLDMGFIKDVTRILDLMPKRRNLG 190 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT++ E+ +S + ++P I V I + + ++K + +L++ Sbjct: 191 LFSATISREVMDISWVYQRDPVEITVRADEENKPDITQYRLD--VERNEKVDTMVRLME- 247 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 I FCN K L L + + AIHG+I QR R K L F+EG ++++ A Sbjct: 248 MGGYDRVIAFCNTKNMTDRLAGLLRMRHITCEAIHGDIQQRVREKTLQKFREGQLRVLAA 307 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 +D+AARGLDI DV VFN+DVP+ E YIHRIGRTGRA RHG AF+LV+ Sbjct: 308 TDVAARGLDIDDVDAVFNYDVPDENEYYIHRIGRTGRAKRHGVAFSLVS 356 >gi|227112916|ref|ZP_03826572.1| ATP-dependent RNA helicase SrmB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 441 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 134/354 (37%), Positives = 203/354 (57%), Gaps = 4/354 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L ++ A+ D GY +PT IQ + IP ++ DV G A TGTGKTA+++LP+L Sbjct: 5 NFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ R + PR LIL PTRELA QVAD + + +L +A + GG+ + + Sbjct: 65 HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D+++ T GR+L + +E L++DEADRMLDMGF I++I + +QT Sbjct: 125 ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LFSAT+ D ++ +E L P IE + + I + K ALL L Sbjct: 185 MLFSATLEGDAIKDFAERLLNEPVEIESDPSRRERKKILQWYYRA-DDLKHKTALLCHQL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D ++ IIF +++ V L L + G + C + G + Q R + + +G + ++ Sbjct: 244 KQPDVTRS-IIFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARG+DI DV HVFNFD+P A+ Y+HRIGRTGRAGR G A + V D Sbjct: 303 VATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHD 356 >gi|195588318|ref|XP_002083905.1| GD13105 [Drosophila simulans] gi|194195914|gb|EDX09490.1| GD13105 [Drosophila simulans] Length = 814 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 213/373 (57%), Gaps = 12/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F + G V+ + G+ KPT IQ + P+ + D+ G+AQTG+GKT ++VLP + Sbjct: 154 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 213 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L+L PTRELA Q+ ++G N ++ + GG P Sbjct: 214 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 269 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 270 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 329 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ L++SAT E+++++E FL N ++ + + S +A V + K L Sbjct: 330 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 389 Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 ++ L S + IIF KK V + ++ +QG+ CAIHG+ Q+ R +LS+F+ Sbjct: 390 IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 449 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL + Sbjct: 450 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 509 Query: 354 I-KHIDAIEKLIE 365 K D I+ L E Sbjct: 510 ANKANDLIQVLRE 522 >gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni] gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni] Length = 507 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 55 LTWKDLGLNETLCQACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPIL 114 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 115 QALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 171 Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH K + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 172 KKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 231 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T E ++ ++ +Y K L +L Sbjct: 232 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKY--KDVYLVHIL 289 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 290 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 348 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR G+A T+V++ DI+ Sbjct: 349 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMVSQYDIELYQR 408 Query: 360 IEKLIEKKV 368 IE L+ K++ Sbjct: 409 IEHLLGKQL 417 >gi|302782918|ref|XP_002973232.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii] gi|300158985|gb|EFJ25606.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii] Length = 597 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 205/373 (54%), Gaps = 22/373 (5%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL------EKGRARVRMPR 74 +VKPTP+Q IP+ L D+ AQTG+GKT +F P++ + ++ R R P Sbjct: 170 FVKPTPVQRHAIPIALAGRDLMACAQTGSGKTLAFCFPIIAGILRDPPRQRPRGRWACPL 229 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 LIL PTREL+AQ+ D +K+ L V + GG Q ++LERG D+L+ TPGR+ Sbjct: 230 ALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQMRELERGVDILVATPGRLH 289 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV----PFTRQTLLFSATMTDE 190 D RG++ ++ I+ L +DEADRMLDMGF P I+ I P RQT+LFSAT Sbjct: 290 DLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSDMPPPGQRQTMLFSATFPRT 349 Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM-KNG- 248 +Q ++ +FL N + V S+ + I Q ++K +LL ++ Q + NG Sbjct: 350 IQSLAADFLHNYIFLAVGRVGSSTDLIVQ--RVERVQEAEKRSLLMDIIHGQKAIGANGQ 407 Query: 249 ----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304 ++F K+ L L + GF IHG+ Q R + L F+ G ++VA+D+ Sbjct: 408 PPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCFRTGMTPILVATDV 467 Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 AARGLDIP V HV N+D+P+ ++Y+HRIGRTGRAG G A +D + +L+ Sbjct: 468 AARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLATAFFTDKDSGLAKPLAELM 527 Query: 365 EKKV----DWLNG 373 ++ WL G Sbjct: 528 QESSQEVPSWLEG 540 >gi|302789710|ref|XP_002976623.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii] gi|300155661|gb|EFJ22292.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii] Length = 595 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 205/373 (54%), Gaps = 22/373 (5%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL------EKGRARVRMPR 74 +VKPTP+Q IP+ L D+ AQTG+GKT +F P++ + ++ R R P Sbjct: 168 FVKPTPVQRHAIPIALAGRDLMACAQTGSGKTLAFCFPIIAGILRDPPRQRPRGRWACPL 227 Query: 75 TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRIL 134 LIL PTREL+AQ+ D +K+ L V + GG Q ++LERG D+L+ TPGR+ Sbjct: 228 ALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQMRELERGVDILVATPGRLH 287 Query: 135 DHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV----PFTRQTLLFSATMTDE 190 D RG++ ++ I+ L +DEADRMLDMGF P I+ I P RQT+LFSAT Sbjct: 288 DLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSDMPPPGQRQTMLFSATFPRT 347 Query: 191 LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM-KNG- 248 +Q ++ +FL N + V S+ + I Q ++K +LL ++ Q + NG Sbjct: 348 IQSLAADFLHNYIFLAVGRVGSSTDLIVQ--RVERVQEAEKRSLLMDIIHGQKAIGANGQ 405 Query: 249 ----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304 ++F K+ L L + GF IHG+ Q R + L F+ G ++VA+D+ Sbjct: 406 PPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCFRTGMTPILVATDV 465 Query: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 AARGLDIP V HV N+D+P+ ++Y+HRIGRTGRAG G A +D + +L+ Sbjct: 466 AARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLATAFFTDKDSGLAKPLAELM 525 Query: 365 EKKV----DWLNG 373 ++ WL G Sbjct: 526 QESSQEVPSWLEG 538 >gi|167855886|ref|ZP_02478636.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755] gi|167852974|gb|EDS24238.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755] Length = 441 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 213/368 (57%), Gaps = 4/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F +L LSP+++ A+ GY +PT IQ +TIP ++ DV G A TGTGKTA+F+LP L Sbjct: 5 ITFEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPAL 64 Query: 61 T-ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +L+ R + PR LIL PTRELA QVA+ E+ + NL +A + GG+ ++ + Sbjct: 65 QHLLDHPRRKPGPPRILILTPTRELAMQVAEQAEELAQFTNLKIATITGGVAYQNHGEVF 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+++ TPGR+ + ++EIL+ DEADRML MGF + I + + + Sbjct: 125 NTNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKY 184 Query: 180 TLLFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSAT+ EL +E L +P +I+ + I+ + K LL +L Sbjct: 185 TWLFSATLEGELLVDFAERILNDPVQIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARL 243 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + S+ ++ I+F ++++V L +L K+G + G + Q R + ++ K+G + + Sbjct: 244 I-SEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVNV 302 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI DV V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + Sbjct: 303 LVATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLVEAHDYKLLG 362 Query: 359 AIEKLIEK 366 I++ E+ Sbjct: 363 KIKRYTEE 370 >gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia] Length = 542 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/400 (36%), Positives = 228/400 (57%), Gaps = 22/400 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF L L+ +V A + GY PT IQ + +PLVL DV + TG+GKTA+F+LP++ Sbjct: 92 DFQQLKLNKSLVKACHEQGYKYPTKIQAQIVPLVLAGKDVLASSCTGSGKTAAFLLPLMQ 151 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ + + LI+ PTRELA Q + F+K + + T AL+IG +P + Q +L R Sbjct: 152 RFGNTKSQ-KYSKALIVMPTRELALQCFEMFQKLNQFSHCTAALVIGAVPIQQQEAELRR 210 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 D++I TPGRI+D N + +++IE+LV+DEADR+++MGF I+ I P RQT Sbjct: 211 YPDIIIATPGRIVDIMKNSFSIDLSSIEVLVLDEADRLMEMGFEAEIKEILQQTPRDRQT 270 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK-KCALLQQLL 239 +L SAT+ ++++S L P ++ V+ A ++ + + K + A L LL Sbjct: 271 VLVSATLKATVKQLSLLALHKPVKVSVDYVDGLAYGLKQYILRIDSDEEKDREATLIALL 330 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLE----KQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q Q ++ IIF K + CH L+ + S C +HGN+ Q+ R++ +FKEG Sbjct: 331 Q-QKFIEKTIIFVRTKHD----CHRLQILLGLKNLSSCELHGNLTQQQRIQAYEDFKEGK 385 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 Q ++A+DLAARGLDI +V V NF++P YIHR+GRT R G G + T+ K+++ Sbjct: 386 FQYLLATDLAARGLDIANVKAVINFEIPYETSRYIHRVGRTARIGNQGVSVTICLKKEVS 445 Query: 356 HIDAIEKLIEKKVDWLN----------GDLSSLNPPLEKI 385 + K ++K+ LN DL SL P ++KI Sbjct: 446 QFKQMIKESKQKLFKLNFNIESIEEIKSDLKSLEPKIKKI 485 >gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] gi|108869558|gb|EAT33783.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] Length = 495 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 216/367 (58%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + D+GL + A + P+ IQ + IPL LQ DV G+A+TG+GKT +F LP+L Sbjct: 59 WEDMGLIDTLCEACRALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQA 118 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + R +IL PTRELA Q+++ FE G + + +++GG+ +Q L R Sbjct: 119 LLENPQRYF---AVILTPTRELAYQISEQFEALGASIGIKCCVIVGGMDMVSQALHLARK 175 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR++DH K + ++ LV+DEADR+L++ F ++ I ++P R+T Sbjct: 176 PHIIIATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELEKILKVIPRERRTF 235 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT +++K+ L++P ++EV++ T E + ++ A+Y K L +L + Sbjct: 236 LFSATMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQYYIFIPAKY--KDVYLVHIL-N 292 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + +IFC+ N V L G + +HG + Q R+ L+ FK Q++++ Sbjct: 293 ELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLAALNKFKGKNRQILIS 352 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR GKA T V + D++ IE Sbjct: 353 TDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIE 412 Query: 362 KLIEKKV 368 L+ KK+ Sbjct: 413 HLLGKKL 419 >gi|238750131|ref|ZP_04611634.1| DEAD/DEAH box helicase domain protein [Yersinia rohdei ATCC 43380] gi|238711675|gb|EEQ03890.1| DEAD/DEAH box helicase domain protein [Yersinia rohdei ATCC 43380] Length = 619 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 208/338 (61%), Gaps = 9/338 (2%) Query: 44 IAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLT 102 +AQTG+GKTA+F LP+L ++ ++ P+ L+L PTRELA QVA+ + K+ + Sbjct: 1 MAQTGSGKTAAFGLPLLHNIDPA---LKAPQVLVLAPTRELAIQVAEALTSFSKDIKGVN 57 Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162 V L GG ++ Q + L G V++ TPGR+LDH RG L ++N++ LV+DEAD ML MG Sbjct: 58 VVALYGGQRYDVQLRALREGPQVVVGTPGRLLDHLKRGTLKLSNLKGLVLDEADEMLRMG 117 Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222 FI ++NI + +P QT LFSATM + +++++ F++ P+ + + + +T I + Sbjct: 118 FIEDVENILAQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQVYW 177 Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 Y K AL+ + L+++D IIF K + + +LE+ G+S A++G+++Q Sbjct: 178 KVGGGYRKNEALV-RFLEAED-FDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQA 235 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R + L K+G + +++A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR Sbjct: 236 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295 Query: 343 GKAFTLVAKEDIKHIDAIE---KLIEKKVDWLNGDLSS 377 G+A V + + + IE KL +V+ N +L S Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVELPNAELLS 333 >gi|218550995|ref|YP_002384786.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ATCC 35469] gi|331675250|ref|ZP_08376001.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280] gi|331685499|ref|ZP_08386083.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299] gi|226739539|sp|B7LU75|RHLB_ESCF3 RecName: Full=ATP-dependent RNA helicase rhlB gi|218358536|emb|CAQ91184.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469] gi|323964028|gb|EGB59518.1| DEAD/DEAH box helicase [Escherichia coli M863] gi|323974364|gb|EGB69492.1| DEAD/DEAH box helicase [Escherichia coli TW10509] gi|324111007|gb|EGC04994.1| DEAD/DEAH box helicase [Escherichia fergusonii B253] gi|325499248|gb|EGC97107.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ECD227] gi|327250632|gb|EGE62338.1| ATP-dependent RNA helicase rhlB [Escherichia coli STEC_7v] gi|331067536|gb|EGI38940.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280] gi|331077200|gb|EGI48414.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299] Length = 421 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|302789414|ref|XP_002976475.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii] gi|300155513|gb|EFJ22144.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii] Length = 613 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 143/393 (36%), Positives = 219/393 (55%), Gaps = 27/393 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD+ L P + + +VKPTP+Q IP+ L D+ AQTG+GKTA+F P++ Sbjct: 155 FADVDLGPVLNENIRRCKFVKPTPVQKHAIPISLHGRDLMACAQTGSGKTAAFCFPIIAG 214 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 + +G +R P LIL PTREL++Q+ D +K+ + V ++ GG Sbjct: 215 ILWNFPPGSRHARG-SRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGTSV 273 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 ++Q K+LERG D+L+ TPGR+ D RG++ ++ + L +DEADRMLDMGF P I+ I Sbjct: 274 QSQLKELERGVDILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKIVE 333 Query: 173 LV----PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228 P RQT+LFSAT E+Q+++ +FL N + V S+ + I Y Sbjct: 334 NTDMPPPGQRQTMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQR--VEYVHD 391 Query: 229 SKKCALLQQLLQSQDTMK-NG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 K ++L ++ +Q NG ++F K+ +L L + G S IHG+ Q Sbjct: 392 VDKRSMLMDMIHAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQV 451 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R L +F+ G ++VA+D+AARGLDIP V HV N+D+P+ ++Y+HRIGRTGRAG+ Sbjct: 452 EREHALRSFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKS 511 Query: 343 GKAFTLVAKEDIK----HIDAIEKLIEKKVDWL 371 G A +D +D +++ ++ +WL Sbjct: 512 GFATAFFTDKDTSLARPLVDLMQEANQQVPEWL 544 >gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 490 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 144/396 (36%), Positives = 223/396 (56%), Gaps = 13/396 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG++ + A Y PTPIQ K+IP+ LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 67 FKDLGVNDALCEACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQA 126 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+K + L+L PTRELA Q+ FE G +L A+++GG+ Q L + Sbjct: 127 LLDKPQPLF----GLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGK 182 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR++DH + K + ++ L++DEADR+LDM F P I I +P R+T Sbjct: 183 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRT 242 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT++ +++ + L++P R+ + N + + I+H + Q K L+ Sbjct: 243 YLFSATLSSKIESLQRASLRDPVRVSISSNKYQTVSTLIQHYMFIPFPQ--KDTYLV--Y 298 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ T K+ I+F + L GF +HG + Q SR+ L+ F+ GT + Sbjct: 299 LVNEHTGKSTIVFTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGTRDI 358 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDIP V V N+D+P ++ YIHR+GRT RAG+ G A LV + D++ Sbjct: 359 LVATDVAARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQYDLEIYA 418 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 IE + KK+ + + +I AQ HAR Sbjct: 419 RIEAALGKKLTEYPSEKEEVMTFQSRIQEAQR-HAR 453 >gi|50842805|ref|YP_056032.1| putative ATP-dependent RNA helicase [Propionibacterium acnes KPA171202] gi|50840407|gb|AAT83074.1| putative ATP-dependent RNA helicase [Propionibacterium acnes KPA171202] gi|314923604|gb|EFS87435.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1] gi|314966442|gb|EFT10541.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2] gi|315092781|gb|EFT64757.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1] gi|315103751|gb|EFT75727.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2] gi|315105899|gb|EFT77875.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1] gi|327327264|gb|EGE69040.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL103PA1] Length = 561 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 149/415 (35%), Positives = 225/415 (54%), Gaps = 30/415 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 FADLG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 55 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLR 114 Query: 61 ----------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 + KG+ P+ L++ PTRELA QV+ + V + GG+ Sbjct: 115 ITLPGDEGWEELTTKGK-----PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGV 169 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 +E+Q L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ Sbjct: 170 GYESQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENL 229 Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230 P +RQT+LFSATM + ++ + L P + + A + A Sbjct: 230 IGRTPASRQTMLFSATMPAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLD 289 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K ++ ++LQ+ D K IIFC K+ L L+ +GF AIHG++ Q +R K L Sbjct: 290 KIEIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 348 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 F+ G ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV Sbjct: 349 FRHGDATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVD 408 Query: 351 KEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG 405 D+ KLI K LN +LS P+E + H + + IP+ + G Sbjct: 409 WADVTRW----KLINKA---LNLELSE---PVETYSTSPHLYTDLD--IPEDAQG 451 >gi|294901515|ref|XP_002777392.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] gi|239885023|gb|EER09208.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] Length = 531 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/390 (36%), Positives = 212/390 (54%), Gaps = 19/390 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F G ++ + AG+ KP+PIQ++ P+ + D+ GIA+TG+GKT +F+LP + Sbjct: 119 FEQAGFPDYILHEIKQAGFEKPSPIQVQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIVH 178 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L++G P L+L PTRELA Q + ++G++ + + GG P Q Sbjct: 179 INAQPYLQRGDG----PIVLVLAPTRELAVQTQEECNRFGRSSRIRNTCVYGGTPRGPQA 234 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L G ++ I TPGR++D G+ + + LV+DEADRMLDMGF P I+ ITS V Sbjct: 235 RALANGVEICIATPGRLIDFLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQVRP 294 Query: 177 TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLL+SAT E+Q ++ + + P I V + S A +V Y KK L Sbjct: 295 DRQTLLWSATWPKEIQGLARDLCREEPVHINVGSMSLRASHNVTQYVDIVQDYEKKDKLK 354 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L + D K +IF + K+ +L L G+ +IHG+ Q R +L FK G Sbjct: 355 QLLERIMDGSKI-VIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGK 413 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG G A++ + Sbjct: 414 SPIMIATDVASRGLDVKDLRHVINYDFPGQIEDYVHRIGRTGRAGAKGSAYSFFTPDKY- 472 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385 KL + + L ++ P LEKI Sbjct: 473 ------KLAKDLIGVLREAEQAVPPELEKI 496 >gi|67624705|ref|XP_668635.1| DEAD box protein [Cryptosporidium hominis TU502] gi|54659844|gb|EAL38406.1| DEAD box protein [Cryptosporidium hominis] Length = 441 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 213/370 (57%), Gaps = 11/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++ A G+ PT IQ KTIP+ L+ D+ G+A+TG+GKT SF++P+L Sbjct: 30 FASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQR 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + +IL PTREL Q+++ F +G +L +A L+GG+ Q+ L + Sbjct: 90 LLDDQVPMY---AVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKK 146 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ +PGR++DH K + I+ LV+DEADR+L M F + I P R T Sbjct: 147 PHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPKNRTTY 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239 LFSATMT ++ K+ + L NP +I VNT TA + + F+ ++S LLQ L Sbjct: 207 LFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGLLQNLG 266 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q GIIFCN N ++ GF+ ++HG + Q R+ L+ FK +L+ Sbjct: 267 Q-----YTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLL 321 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++ +RGLDIP V V NFD+P +++Y+HR+GRT RAGR G+A ++V + D++ Sbjct: 322 FTTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQR 381 Query: 360 IEKLIEKKVD 369 IE + KK+D Sbjct: 382 IEFALNKKLD 391 >gi|218701307|ref|YP_002408936.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI39] gi|300940005|ref|ZP_07154630.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1] gi|226739532|sp|B7NTG2|RHLB_ECO7I RecName: Full=ATP-dependent RNA helicase rhlB gi|218371293|emb|CAR19126.1| ATP-dependent RNA helicase [Escherichia coli IAI39] gi|300455138|gb|EFK18631.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1] Length = 421 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B] gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B] Length = 403 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L ++ A+ + GY +PT IQ + IP L D+ A TGTGKTA+FVLP L Sbjct: 5 FAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA Q+AD KN L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+ ++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239 LFSAT+ + ++ + + L +P I+ +P + I + A A++ K LL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH--KLELLKHII 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F ++ + L LE I G + Q R +S F++GT+ ++ Sbjct: 243 TQQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A ++V D +D Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360 Query: 360 IEKLIEKKV 368 + + +++ + Sbjct: 361 VARYVKEDI 369 >gi|328958182|ref|YP_004375568.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4] gi|328674506|gb|AEB30552.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4] Length = 488 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 134/361 (37%), Positives = 212/361 (58%), Gaps = 7/361 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + +S +++ A+ Y PT +Q + IPL L+ DV +QTG+GKT S+ +P+ Sbjct: 12 FEEFAISDEIIAALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLC-- 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 EK P+ L+L PTRELA QV ++ G+ + + G F+ Q +L++ Sbjct: 70 -EKVDWEENKPQVLVLVPTRELAIQVKEDLMNVGRLKRVKATAVYGKASFDTQKSELKQK 128 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 + +++ TPGR+LDH +G + IE LV+DEAD ML+MGF ++ I + +P RQTLL Sbjct: 129 SHIVVGTPGRVLDHLQKGTFKIEKIECLVLDEADEMLNMGFADQVEAIINFLPAERQTLL 188 Query: 183 FSATMTDELQKVSENFLQNPKR-IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+++++ +++ K+ I + T + I V Q KK L LL Sbjct: 189 FSATMPKEIERIASFYMKPDKQSIVIETTELSKPKIIQSSVK--VQEDKKEQQLLDLLTV 246 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + +IFCN ++ V NL L K G + IHG + Q R ++ +F++G + +VA Sbjct: 247 ENA-DSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVA 305 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI +V HV NFDVP E+++HR GRTGRAG+ G A TLV ++ K + ++ Sbjct: 306 TDVAARGIDIENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNEVK 365 Query: 362 K 362 + Sbjct: 366 E 366 >gi|255009347|ref|ZP_05281473.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] gi|313147103|ref|ZP_07809296.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] gi|313135870|gb|EFR53230.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] Length = 418 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 218/371 (58%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ + IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELQLNDNVLEALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +I+ PTRELA Q+ E + ++ + GG I FE Q K Sbjct: 61 NRLSEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ L NP +++ + ++ E A Y Y + + + Sbjct: 181 RQTIMFSATMPSKIQQLANTILNNPVEVKL----AVSKPAEKIVQAAYVCYENQKLGIVR 236 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L +++ + IIF + K V + +L+ +V +H +++Q R I+ FK G I Sbjct: 237 SLFAEEVPERVIIFASSKLKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ +RG+DI D+ V NFDVP+ +E+Y+HRIGRT RA G A T V +++ + Sbjct: 297 ILVATDIVSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356 Query: 358 DAIEKLIEKKV 368 IE +EK++ Sbjct: 357 KNIENFLEKEI 367 >gi|153871201|ref|ZP_02000433.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS] gi|152072333|gb|EDN69567.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS] Length = 466 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/388 (37%), Positives = 220/388 (56%), Gaps = 15/388 (3%) Query: 3 FADLGLSPKVVCAVL----DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58 F+ L P++ A+L GY TPIQ +++P +L+ DV A+TG+GKTA+F + Sbjct: 6 FSALAFKPEIKQAMLANLESIGYSNMTPIQAESLPSILKNQDVIAQAKTGSGKTAAFGIG 65 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNK 117 +L+ L +V+ L+L PTRELA QV + + N+ + L GG P Q Sbjct: 66 LLSKLNAKNYQVQ---ALVLCPTRELAEQVGQEIRRLARFTQNVKLLSLCGGKPIAPQRD 122 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GA +++ TPGRI DH +G L + N LV+DEADRMLDMGF + +I S +P Sbjct: 123 SLAHGAHIIVGTPGRIQDHLRKGSLNLKNAHTLVLDEADRMLDMGFYDDMMDIISYLPKK 182 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT D + ++S + P I+V + S +E IE F +K A++ Sbjct: 183 RQTLLFSATFPDSIVQMSHAIQKQPVNIQVESLHSYSE-IEQRFYQVKQPQHRKEAVMTL 241 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L Q ++ +IFCN K + L+K G+ AIHG+++Q+ R ++L F + Sbjct: 242 LAHYQP--ESTVIFCNTKLQCQEIATQLKKNGYYAIAIHGDLEQKERDQVLLRFANKSCS 299 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI D+ V N+++P + +IHRIGRTGRAG+ G A +L + I Sbjct: 300 ILVATDVAARGLDINDLQVVINYELPGSQDIHIHRIGRTGRAGKKGLALSLYTASEQHKI 359 Query: 358 DAIEKLIEK--KVDWLNG--DLSSLNPP 381 +AI ++ + + D L D +L PP Sbjct: 360 EAIAEIQNQPCRCDALESLEDKGTLRPP 387 >gi|142982611|sp|P0C2N8|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1 Length = 829 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/359 (39%), Positives = 207/359 (57%), Gaps = 3/359 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ LS ++ + G+ KPTPIQ KTIP+ L DV G A TG+GKTA+FV+P+L Sbjct: 295 FQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILER 354 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +V R +IL PTRELA Q K + ++ L +GG+ + Q +L Sbjct: 355 LLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLR 414 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV+I TPGR +DH N ++ IEILV+DEADRML+ GF + I + +P +RQT+ Sbjct: 415 PDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 474 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240 LFSATMT + ++ L P RI ++ TA T+ FV + SK+ L + + Sbjct: 475 LFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICK 534 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + T + IIF QKK + G S +HG+++Q R++ + +F++G + ++ Sbjct: 535 TIYTERV-IIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLL 593 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 A+DLA+RGLDI V V N++ P E Y+HR+GRT RAGR G A TL A+ D K + A Sbjct: 594 ATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKA 652 >gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana] Length = 456 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 231/418 (55%), Gaps = 18/418 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ ++V A G+ P+ IQ + +P L+ DV G+AQTG+GKT +F +P+L Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70 Query: 63 L---------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFE 113 L +KGR +L PTRELA Q+A+ FE G + +L A+L GGI Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLFGGIDRM 130 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q L + V++ TPGR+ DH + K + +++ LV+DEADR+L+ F + I Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 +P R+T LFSATMT +++K+ L+NP +IE + ST +T++ + A+Y K C Sbjct: 191 EIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKY-KDC 249 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L+ L + ++ +IF L L GF I G + Q R+ L+ FK Sbjct: 250 YLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++V +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR G +LV + Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRK 410 +++ IEKLI KK+ + + LE++ A+K + + K +G +R+ Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV-----AEAKKLSAMNMKESGGRKRR 420 >gi|67539522|ref|XP_663535.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4] gi|74657087|sp|Q5B0J9|DBP2_EMENI RecName: Full=ATP-dependent RNA helicase dbp2 gi|40738604|gb|EAA57794.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4] gi|259479898|tpe|CBF70542.1| TPA: ATP-dependent RNA helicase dbp2 (EC 3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5B0J9] [Aspergillus nidulans FGSC A4] Length = 563 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 209/373 (56%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPT IQ + P+ L DV GIA+TG+GKT S+ LP + Sbjct: 142 FDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVH 201 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P LIL PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 202 INAQPLLAPGDG----PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 257 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 258 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 317 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E+++++ +FL N ++ + + +A V +++ K+ +++ Sbjct: 318 DRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIK 377 Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + N ++F K+ + L + G+ +IHG+ Q+ R +L+ FK G Sbjct: 378 HLEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 437 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A T ++ K Sbjct: 438 SPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAK 497 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 498 QARDLVTILSEAK 510 >gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3] gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC 18188] Length = 482 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 208/356 (58%), Gaps = 10/356 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + A GY PTPIQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 58 FKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 117 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK ++ LIL PTRELA Q++ FE G ++ A+++GG+ Q L + Sbjct: 118 LMEKPQSLF----GLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGK 173 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + N++ LV+DEADR+LD+ F P + I ++P R+T Sbjct: 174 KPHIVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM+ +++ + L NP R+ +++ T T+ ++ +Y L L Sbjct: 234 YLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQSYLFIPHKYKD---LYLVYL 290 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ ++ I+F L L GF +HG + Q SR+ LS F+ + ++ Sbjct: 291 LNEYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDIL 350 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 VA+D+AARGLDIP V V NFD+P ++ YIHR+GRT RAG+ G AF +V + D++ Sbjct: 351 VATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYDLE 406 >gi|16131636|ref|NP_418227.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|24115073|ref|NP_709583.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 301] gi|26250518|ref|NP_756558.1| ATP-dependent RNA helicase RhlB [Escherichia coli CFT073] gi|30064925|ref|NP_839096.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 2457T] gi|74314294|ref|YP_312713.1| ATP-dependent RNA helicase RhlB [Shigella sonnei Ss046] gi|89110237|ref|AP_004017.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. W3110] gi|91213300|ref|YP_543286.1| ATP-dependent RNA helicase RhlB [Escherichia coli UTI89] gi|110644107|ref|YP_671837.1| ATP-dependent RNA helicase RhlB [Escherichia coli 536] gi|117626041|ref|YP_859364.1| ATP-dependent RNA helicase RhlB [Escherichia coli APEC O1] gi|157156932|ref|YP_001465261.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A] gi|157163253|ref|YP_001460571.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS] gi|170022193|ref|YP_001727147.1| ATP-dependent RNA helicase RhlB [Escherichia coli ATCC 8739] gi|170083267|ref|YP_001732587.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|188493269|ref|ZP_03000539.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638] gi|191166123|ref|ZP_03027958.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A] gi|191174380|ref|ZP_03035885.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11] gi|193066115|ref|ZP_03047170.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22] gi|194429768|ref|ZP_03062283.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171] gi|194438673|ref|ZP_03070761.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1] gi|209921253|ref|YP_002295337.1| ATP-dependent RNA helicase RhlB [Escherichia coli SE11] gi|215489108|ref|YP_002331539.1| ATP-dependent RNA helicase RhlB [Escherichia coli O127:H6 str. E2348/69] gi|218556342|ref|YP_002389256.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI1] gi|218560846|ref|YP_002393759.1| ATP-dependent RNA helicase RhlB [Escherichia coli S88] gi|218692059|ref|YP_002400271.1| ATP-dependent RNA helicase RhlB [Escherichia coli ED1a] gi|218697497|ref|YP_002405164.1| ATP-dependent RNA helicase RhlB [Escherichia coli 55989] gi|227888637|ref|ZP_04006442.1| ATP-dependent RNA helicase [Escherichia coli 83972] gi|237702790|ref|ZP_04533271.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA] gi|238902861|ref|YP_002928657.1| ATP-dependent RNA helicase [Escherichia coli BW2952] gi|253775595|ref|YP_003038426.1| ATP-dependent RNA helicase RhlB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038992|ref|ZP_04873043.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43] gi|254163724|ref|YP_003046832.1| ATP-dependent RNA helicase RhlB [Escherichia coli B str. REL606] gi|256021478|ref|ZP_05435343.1| ATP-dependent RNA helicase RhlB [Shigella sp. D9] gi|256026128|ref|ZP_05439993.1| ATP-dependent RNA helicase RhlB [Escherichia sp. 4_1_40B] gi|260846444|ref|YP_003224222.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str. 12009] gi|293417246|ref|ZP_06659871.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185] gi|300818751|ref|ZP_07098958.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1] gi|300823311|ref|ZP_07103442.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7] gi|300904031|ref|ZP_07121913.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1] gi|300921514|ref|ZP_07137858.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1] gi|300923279|ref|ZP_07139328.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1] gi|300930057|ref|ZP_07145487.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1] gi|300947363|ref|ZP_07161559.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1] gi|300955218|ref|ZP_07167613.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1] gi|300979308|ref|ZP_07174492.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1] gi|300985808|ref|ZP_07177600.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1] gi|301021429|ref|ZP_07185453.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1] gi|301028992|ref|ZP_07192149.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1] gi|301047340|ref|ZP_07194425.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1] gi|301303674|ref|ZP_07209795.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1] gi|301325469|ref|ZP_07218952.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1] gi|301646155|ref|ZP_07246054.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1] gi|306815182|ref|ZP_07449335.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101] gi|307140480|ref|ZP_07499836.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736] gi|307313643|ref|ZP_07593263.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|309796280|ref|ZP_07690690.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7] gi|312971937|ref|ZP_07786111.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70] gi|331644514|ref|ZP_08345634.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736] gi|331649605|ref|ZP_08350687.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605] gi|331660125|ref|ZP_08361061.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206] gi|331665426|ref|ZP_08366325.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143] gi|331670625|ref|ZP_08371462.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271] gi|331679889|ref|ZP_08380552.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591] gi|332282712|ref|ZP_08395125.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9] gi|67472034|sp|P0A8J8|RHLB_ECOLI RecName: Full=ATP-dependent RNA helicase rhlB gi|67472035|sp|P0A8J9|RHLB_ECOL6 RecName: Full=ATP-dependent RNA helicase rhlB gi|67472036|sp|P0A8K0|RHLB_SHIFL RecName: Full=ATP-dependent RNA helicase rhlB gi|122421788|sp|Q1R4F9|RHLB_ECOUT RecName: Full=ATP-dependent RNA helicase rhlB gi|123147496|sp|Q0TAU3|RHLB_ECOL5 RecName: Full=ATP-dependent RNA helicase rhlB gi|123615737|sp|Q3YVI4|RHLB_SHISS RecName: Full=ATP-dependent RNA helicase rhlB gi|189040027|sp|B1IWC0|RHLB_ECOLC RecName: Full=ATP-dependent RNA helicase rhlB gi|189040118|sp|A1AHV0|RHLB_ECOK1 RecName: Full=ATP-dependent RNA helicase rhlB gi|189040119|sp|A8A6N4|RHLB_ECOHS RecName: Full=ATP-dependent RNA helicase rhlB gi|189040120|sp|A7ZTY2|RHLB_ECO24 RecName: Full=ATP-dependent RNA helicase rhlB gi|226739530|sp|B7MGJ1|RHLB_ECO45 RecName: Full=ATP-dependent RNA helicase rhlB gi|226739533|sp|B7M5C7|RHLB_ECO8A RecName: Full=ATP-dependent RNA helicase rhlB gi|226739534|sp|B1X9Z4|RHLB_ECODH RecName: Full=ATP-dependent RNA helicase rhlB gi|226739536|sp|B6I4B6|RHLB_ECOSE RecName: Full=ATP-dependent RNA helicase rhlB gi|254797687|sp|B7UMN5|RHLB_ECO27 RecName: Full=ATP-dependent RNA helicase rhlB gi|254797688|sp|B7L8B6|RHLB_ECO55 RecName: Full=ATP-dependent RNA helicase rhlB gi|254797689|sp|B7MR01|RHLB_ECO81 RecName: Full=ATP-dependent RNA helicase rhlB gi|259585613|sp|C4ZZ48|RHLB_ECOBW RecName: Full=ATP-dependent RNA helicase rhlB gi|26110948|gb|AAN83132.1|AE016769_247 Putative ATP-dependent RNA helicase rhlB [Escherichia coli CFT073] gi|1790214|gb|AAC76785.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|24054339|gb|AAN45290.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301] gi|30043186|gb|AAP18907.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T] gi|73857771|gb|AAZ90478.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046] gi|85676268|dbj|BAE77518.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr. W3110] gi|91074874|gb|ABE09755.1| putative ATP-dependent RNA helicase [Escherichia coli UTI89] gi|110345699|gb|ABG71936.1| putative ATP-dependent RNA helicase RhlB [Escherichia coli 536] gi|115515165|gb|ABJ03240.1| ATP-dependent RNA helicase [Escherichia coli APEC O1] gi|157068933|gb|ABV08188.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS] gi|157078962|gb|ABV18670.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A] gi|169757121|gb|ACA79820.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739] gi|169891102|gb|ACB04809.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|188488468|gb|EDU63571.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638] gi|190903899|gb|EDV63613.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A] gi|190905357|gb|EDV64991.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11] gi|192926212|gb|EDV80851.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22] gi|194412180|gb|EDX28487.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171] gi|194422477|gb|EDX38476.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1] gi|209914512|dbj|BAG79586.1| RNA helicase [Escherichia coli SE11] gi|215267180|emb|CAS11628.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69] gi|218354229|emb|CAV00884.1| ATP-dependent RNA helicase [Escherichia coli 55989] gi|218363111|emb|CAR00751.1| ATP-dependent RNA helicase [Escherichia coli IAI1] gi|218367615|emb|CAR05399.1| ATP-dependent RNA helicase [Escherichia coli S88] gi|218429623|emb|CAR10584.2| ATP-dependent RNA helicase [Escherichia coli ED1a] gi|222035482|emb|CAP78227.1| ATP-dependent RNA helicase rhlB [Escherichia coli LF82] gi|226838683|gb|EEH70711.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43] gi|226902961|gb|EEH89220.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA] gi|227834476|gb|EEJ44942.1| ATP-dependent RNA helicase [Escherichia coli 83972] gi|238860046|gb|ACR62044.1| ATP-dependent RNA helicase [Escherichia coli BW2952] gi|242379313|emb|CAQ34124.1| RhlB, subunit of RhlB, ATP-dependent RNA helicase of the RNA degradosome and degradosome [Escherichia coli BL21(DE3)] gi|253326639|gb|ACT31241.1| DEAD/DEAH box helicase domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975625|gb|ACT41296.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606] gi|253979781|gb|ACT45451.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)] gi|257761591|dbj|BAI33088.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str. 12009] gi|260451375|gb|ACX41797.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1] gi|281180829|dbj|BAI57159.1| RNA helicase [Escherichia coli SE15] gi|281603170|gb|ADA76154.1| putative Superfamily II DNA and RNA helicase [Shigella flexneri 2002017] gi|284923885|emb|CBG36984.1| ATP-dependent RNA helicase [Escherichia coli 042] gi|291431014|gb|EFF04009.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185] gi|294489863|gb|ADE88619.1| ATP-dependent RNA helicase RhlB [Escherichia coli IHE3034] gi|299878035|gb|EFI86246.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1] gi|300300757|gb|EFJ57142.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1] gi|300308061|gb|EFJ62581.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1] gi|300317872|gb|EFJ67656.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1] gi|300398065|gb|EFJ81603.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1] gi|300403983|gb|EFJ87521.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1] gi|300407959|gb|EFJ91497.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1] gi|300411582|gb|EFJ94892.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1] gi|300420424|gb|EFK03735.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1] gi|300453025|gb|EFK16645.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1] gi|300462045|gb|EFK25538.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1] gi|300524097|gb|EFK45166.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7] gi|300528717|gb|EFK49779.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1] gi|300840974|gb|EFK68734.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1] gi|300847696|gb|EFK75456.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1] gi|301075624|gb|EFK90430.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1] gi|305851551|gb|EFM52005.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101] gi|306906624|gb|EFN37136.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|307555908|gb|ADN48683.1| putative ATP-dependent RNA helicase [Escherichia coli ABU 83972] gi|307628843|gb|ADN73147.1| ATP-dependent RNA helicase RhlB [Escherichia coli UM146] gi|308120162|gb|EFO57424.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7] gi|309704219|emb|CBJ03566.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407] gi|310334314|gb|EFQ00519.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70] gi|312948335|gb|ADR29162.1| ATP-dependent RNA helicase RhlB [Escherichia coli O83:H1 str. NRG 857C] gi|313647775|gb|EFS12222.1| ATP-dependent RNA helicase rhlB [Shigella flexneri 2a str. 2457T] gi|315063076|gb|ADT77403.1| ATP-dependent RNA helicase [Escherichia coli W] gi|315138358|dbj|BAJ45517.1| ATP-dependent RNA helicase rhlB [Escherichia coli DH1] gi|315254144|gb|EFU34112.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1] gi|315284670|gb|EFU44115.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3] gi|315293136|gb|EFU52488.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1] gi|315296843|gb|EFU56132.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3] gi|315618521|gb|EFU99107.1| ATP-dependent RNA helicase rhlB [Escherichia coli 3431] gi|320197592|gb|EFW72204.1| ATP-dependent RNA helicase RhlB [Escherichia coli WV_060327] gi|320198512|gb|EFW73113.1| ATP-dependent RNA helicase RhlB [Escherichia coli EC4100B] gi|323161156|gb|EFZ47074.1| ATP-dependent RNA helicase rhlB [Escherichia coli E128010] gi|323173397|gb|EFZ59026.1| ATP-dependent RNA helicase rhlB [Escherichia coli LT-68] gi|323182553|gb|EFZ67957.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1357] gi|323189497|gb|EFZ74777.1| ATP-dependent RNA helicase rhlB [Escherichia coli RN587/1] gi|323380861|gb|ADX53129.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11] gi|323934171|gb|EGB30602.1| DEAD/DEAH box helicase [Escherichia coli E1520] gi|323943817|gb|EGB39912.1| DEAD/DEAH box helicase [Escherichia coli H120] gi|323949335|gb|EGB45225.1| DEAD/DEAH box helicase [Escherichia coli H252] gi|323954095|gb|EGB49892.1| DEAD/DEAH box helicase [Escherichia coli H263] gi|323959037|gb|EGB54706.1| DEAD/DEAH box helicase [Escherichia coli H489] gi|323969378|gb|EGB64677.1| DEAD/DEAH box helicase [Escherichia coli TA007] gi|324007445|gb|EGB76664.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2] gi|324014725|gb|EGB83944.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1] gi|324016171|gb|EGB85390.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3] gi|324115756|gb|EGC09691.1| DEAD/DEAH box helicase [Escherichia coli E1167] gi|330908082|gb|EGH36601.1| ATP-dependent RNA helicase RhlB [Escherichia coli AA86] gi|331036186|gb|EGI08421.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736] gi|331041475|gb|EGI13623.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605] gi|331052693|gb|EGI24728.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206] gi|331057324|gb|EGI29313.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143] gi|331062098|gb|EGI34020.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271] gi|331072436|gb|EGI43768.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591] gi|332105064|gb|EGJ08410.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9] gi|332345760|gb|AEE59094.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMNK88] gi|332751084|gb|EGJ81488.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-671] gi|332996857|gb|EGK16477.1| ATP-dependent RNA helicase rhlB [Shigella flexneri VA-6] gi|333013582|gb|EGK32949.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-304] Length = 421 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] Length = 538 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 214/374 (57%), Gaps = 16/374 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL + +V ++ +AG P PIQ T+P+ L +D+ G A+TGTGKT F +P L Sbjct: 28 FADLKVREDIVASLSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPALQR 87 Query: 63 L----EKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + +KG + P + LI+ PTRELA QV + + K+ N+++ + GG P+E Q Sbjct: 88 VVREGDKGYEDLEFPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYEEQ 147 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 L+ G DV++ TPGR++D NR ++L + ++ +V+DEAD MLD+GF+P ++ I + + Sbjct: 148 INALKAGTDVIVGTPGRLID-LNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAAL 206 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP----SSTAETIEHCFVATYAQYSK 230 P RQ +LFSATM + ++ ++ P I P S T I A Sbjct: 207 PPVRQAMLFSATMPGAVITMARRYMTRPTHIRAQDPGDDDSLTKRNIRQLIY--RAHNMD 264 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 K ++ +LLQ++ K IIF K++ L L +GF+ ++HG++ Q +R + L Sbjct: 265 KDEMVARLLQAEGRGKT-IIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKA 323 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 F+ G ++++VA+D+AARG+D+ DV HV N P+ Y+HR+GRTGRAG G A T V Sbjct: 324 FRSGKVEILVATDVAARGIDVDDVTHVVNLQCPDDENTYLHRVGRTGRAGNTGTAVTFVD 383 Query: 351 KEDIKHIDAIEKLI 364 + + I K + Sbjct: 384 WDSVPRWSLINKAL 397 >gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4] gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4] Length = 522 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/388 (37%), Positives = 217/388 (55%), Gaps = 23/388 (5%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 + P++V A+ +AG IQ T+PL + D+ G A+TG GKT F +P+L Sbjct: 1 MKPEIVKALAEAGIEHTFAIQALTLPLAMAGDDLIGQARTGMGKTLGFGVPLLH------ 54 Query: 68 ARVRMP-----RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 RV++P + L++ PTREL QVA++ + GK+ + + GG P+E Q + L +G Sbjct: 55 -RVQVPGDGTPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRKG 113 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DV+I TPGR+LD + L++ I LV+DEAD MLD+GF+P I+ I +VP RQT+L Sbjct: 114 VDVVIGTPGRLLDLAEQQHLVLGKIRGLVLDEADEMLDLGFLPDIERILRMVPDERQTML 173 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM + ++ FL P I + A A K L+ + LQ++ Sbjct: 174 FSATMPGPIITLARTFLNQPTHIRAEENDAGAIHERTAQFVYRAHSMDKTELIARALQAE 233 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 +IF K+ + L ++GF+ A+HG++ Q +R + L F+ G + ++VA+ Sbjct: 234 GRGLT-MIFSRTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVAT 292 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI DV HV N+ P + Y+HRIGRTGRAGR G A TLV ++ +A K Sbjct: 293 DVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAITLVDWDE----EARWK 348 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 LI D LN DL+ P+E + H Sbjct: 349 LIS---DTLNLDLAE---PVETYSSSPH 370 >gi|60115445|dbj|BAD90013.1| p68 RNA helicase [Tubifex tubifex] Length = 490 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/403 (36%), Positives = 227/403 (56%), Gaps = 22/403 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + L V + + +PTPIQ + P+ L D+ GIAQTG+GKT S++LP + Sbjct: 61 LTFQEACLPDYVQLILRQQNWTQPTPIQAQGWPIALSGLDIVGIAQTGSGKTLSYILPAI 120 Query: 61 TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + R++ P L+L PTRELA QVA + +G ++ + GG P Q + Sbjct: 121 IHINH-QPRLQYGDGPVCLVLVPTRELAQQVAQVAQLFGNTSSVRNVCVYGGAPKGPQIR 179 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+RGA++ I TPGR++D + GK + LV+DEADRMLDMGF P I+ I V Sbjct: 180 DLQRGAEICIATPGRLIDLLDAGKTNLQRCTYLVLDEADRMLDMGFEPQIRKILEQVRPD 239 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKC 232 RQTL++SAT E+++++E FL + +I + + TA + ++ C + + SK Sbjct: 240 RQTLMWSATWPKEVKQLAETFLTDYIQINIGSTQLTANHSILQIVDVC--SEEEKESKLN 297 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 LLQ+++ ++ ++F K+ +L + +++ G+ IHG+ Q R +L +F+ Sbjct: 298 RLLQEIM--GESNNKTMVFVETKRRANDLAYKMKRAGWMAACIHGDKSQEERDSVLRDFR 355 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-K 351 G I ++VA+D+AARGLD+ DV V NFD PN +E+Y+HRIGRTGRAG G A+TL K Sbjct: 356 NGRIPILVATDVAARGLDVDDVKFVVNFDYPNCSEDYVHRIGRTGRAGHTGTAYTLFTPK 415 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 K D IE L E +NP L ++ ++ R Sbjct: 416 NAPKARDLIEVLTEAN--------QQINPKLSQLMSTARDYGR 450 >gi|253771020|gb|ACT35658.1| PL10-like protein [Haliotis asinina] Length = 775 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/377 (38%), Positives = 216/377 (57%), Gaps = 28/377 (7%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARV--------- 70 Y KPTP+Q +IP+VL R D+ AQTG+GKTA+F++P+L I +KG +V Sbjct: 319 YTKPTPVQKYSIPIVLGRRDLMACAQTGSGKTAAFLVPILNQIYDKGPGQVPQQQRQYGK 378 Query: 71 ---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLI 127 + P L+L PTRELA+Q+ D K+ + ++ GG AQ + L+RG +L+ Sbjct: 379 RTKQYPIALVLAPTRELASQIYDEARKFAYRSRVRPCVVYGGADIGAQMRDLDRGCHMLV 438 Query: 128 CTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL----VPFTRQTLLF 183 TPGR++D RGK+ + + LV+DEADRMLDMGF P I+ I V RQTL+F Sbjct: 439 ATPGRLVDMVERGKIGLEYCKFLVLDEADRMLDMGFEPQIRLIVEKNGMPVSGERQTLMF 498 Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243 SAT E+Q ++ +FL+N + V ST+E I V + + ++K + L L+ + Sbjct: 499 SATFPKEIQILARDFLENYVFLAVGRVGSTSENITQKVV--WVEENEKRSFLLDLINASG 556 Query: 244 TMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +G + F KK L L+K+G+ +IHG+ QR R L F+ G + Sbjct: 557 MFSSGPESLTLTFLETKKGADALEEFLQKEGYPATSIHGDRSQREREDALKVFRSGDRPI 616 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI- 357 +VA+ +AARGLDIP+V HV NFD+P+ E Y+HRIGRTGR G G A + +++ I Sbjct: 617 LVATAVAARGLDIPNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNKNIIR 676 Query: 358 DAIEKLIEKKVD---WL 371 D ++ L+E + WL Sbjct: 677 DLLDLLVEANQEVPTWL 693 >gi|157144413|ref|YP_001451732.1| ATP-dependent RNA helicase RhlB [Citrobacter koseri ATCC BAA-895] gi|189040026|sp|A8ACT3|RHLB_CITK8 RecName: Full=ATP-dependent RNA helicase rhlB gi|157081618|gb|ABV11296.1| hypothetical protein CKO_00122 [Citrobacter koseri ATCC BAA-895] Length = 421 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 213/373 (57%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKV+ A+ + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ I+F N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIEAYIGHSI 379 >gi|309972421|gb|ADO95622.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846] Length = 439 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 212/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ Y +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKSYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR L+L PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKAENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL + L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAARLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +++ + GI+F ++++ L +L K+G + G + Q R + K G + ++V Sbjct: 245 TEEVTR-GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILEGLEPRTKPP 386 >gi|330792086|ref|XP_003284121.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum] gi|325085935|gb|EGC39333.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum] Length = 593 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 137/359 (38%), Positives = 204/359 (56%), Gaps = 11/359 (3%) Query: 16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRAR 69 ++ AG+ PTPIQ + P+ L+ D+ G+A+TG+GKT +F+LP + L+ G Sbjct: 234 IMAAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPTLKPGDG- 292 Query: 70 VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129 P L+L PTRELA Q+ + K+G ++ + GG +Q L++G +++I T Sbjct: 293 ---PIVLVLAPTRELALQIQEQARKFGGTSQISNVCVYGGASKHSQVMMLKKGVEIVIAT 349 Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTD 189 PGR++D G + + LV+DEADRMLDMGF P I+ I S + RQTL+FSAT Sbjct: 350 PGRLIDILTSGDTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQTLMFSATWPK 409 Query: 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGI 249 E+Q ++ +FL + ++ + + TA + V ++Y KK L + L + I Sbjct: 410 EVQSLANDFLSDHIQVHIGSSELTANHNVNQIVEVCSEYEKKERLFKFLEANVSKDDKVI 469 Query: 250 IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGL 309 IF +K V L SL+ GF IHGN Q R +LS FK G +M+A+DLA+RGL Sbjct: 470 IFAETRKGVDELHRSLQSAGFKSIGIHGNKSQPERDFVLSQFKNGIFPIMIATDLASRGL 529 Query: 310 DIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI-DAIEKLIEKK 367 D+ D+ V N+D PN E Y+HRIGRT RAG G + + + +E+ + D I+ L E K Sbjct: 530 DVKDIKFVVNYDFPNTIETYVHRIGRTARAGATGTSISFLTRENARLANDLIKVLSEAK 588 >gi|33519584|ref|NP_878416.1| cold-shock DEAD-box protein A, inducible ATP-independent RNA helicase [Candidatus Blochmannia floridanus] gi|33517247|emb|CAD83630.1| Cold-shock DEAD-box protein A, inducible ATP-independent RNA helicase [Candidatus Blochmannia floridanus] Length = 487 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 229/381 (60%), Gaps = 14/381 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGL+ +V + + GY P PIQ + IPL+L+ D+ G+A TG+GKTA+F+LP+L Sbjct: 8 FVDLGLNTYIVDMLSNIGYQAPLPIQTQCIPLLLKGCDLLGMAHTGSGKTAAFLLPLLQN 67 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQNKKLE 120 ++ + R + LI+ PTRELA Q+ + K+ + + +A+L GG + Q L+ Sbjct: 68 ID---IKQRFVQGLIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQNYRIQFNDLK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + ++I TPGR+LDH +RG L ++ ++ L+IDEAD ML MGFI I++I VP RQT Sbjct: 125 KNPHIIIGTPGRLLDHLSRG-LDISKLKTLIIDEADEMLRMGFIEDIEHIIRYVPTHRQT 183 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ ++K+S F+ NPK I +N S I+ + + SK AL++ L Sbjct: 184 ALFSATLPVSIRKLSYKFMCNPKEIYINPSISACADIKQSYWLVHG-ISKHEALMRFL-- 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + IIF K + + L++ G++ A++G+++Q R K +S + GT+ +++ Sbjct: 241 EVEKFEAVIIFVRTKSATLQISEILQRFGYNSAALNGDMNQSVRCKTISRLRCGTLDILI 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARGLDI + V N+D+P Y+HRIGRTGRAGR GK+ V +++ + + Sbjct: 301 TTDVAARGLDINRISFVINYDIPCNYNAYVHRIGRTGRAGRSGKSLLFVERQEYHLFNYV 360 Query: 361 EKLIEKKVDWLNGDLSSLNPP 381 I+++V LN ++ + P Sbjct: 361 ---IKRRV--LNSNIVKVKCP 376 >gi|308187815|ref|YP_003931946.1| ATP-dependent RNA helicase [Pantoea vagans C9-1] gi|308058325|gb|ADO10497.1| ATP-dependent RNA helicase [Pantoea vagans C9-1] Length = 442 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 208/368 (56%), Gaps = 4/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ + G+ +PT IQ IP L+ DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LI+ PTRELA QVAD+ + K+ +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E LV+DEADRMLDMGF I+ I + + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRWRKQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ D ++ +E L P +E + + I+ + K LL LLQ Sbjct: 186 LFSATLEGDNIRDFAERLLNEPVELEADPSRRERKKIQQWYYRA-DDLQHKTKLLIHLLQ 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D ++ I+F +++ + L L + G + G + Q R + + EG + ++V Sbjct: 245 QPDVTRS-IVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HVFN+D+P A+ Y+HRIGRTGRAGR G A +LV D + I Sbjct: 304 ATDIAARGIDVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDFVLLGKI 363 Query: 361 EKLIEKKV 368 + + + + Sbjct: 364 TRYVNEPI 371 >gi|110807530|ref|YP_691050.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 5 str. 8401] gi|122957085|sp|Q0SYX0|RHLB_SHIF8 RecName: Full=ATP-dependent RNA helicase rhlB gi|110617078|gb|ABF05745.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401] Length = 421 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIENYIGHSI 379 >gi|332998278|gb|EGK17880.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-272] Length = 421 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|218707416|ref|YP_002414935.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMN026] gi|293407410|ref|ZP_06651330.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412] gi|298383150|ref|ZP_06992744.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302] gi|300900676|ref|ZP_07118829.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1] gi|226739535|sp|B7NF85|RHLB_ECOLU RecName: Full=ATP-dependent RNA helicase rhlB gi|218434513|emb|CAR15440.1| ATP-dependent RNA helicase [Escherichia coli UMN026] gi|291425521|gb|EFE98559.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412] gi|298276386|gb|EFI17905.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302] gi|300355825|gb|EFJ71695.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1] Length = 421 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|28574962|ref|NP_648062.2| CG10077, isoform A [Drosophila melanogaster] gi|20976828|gb|AAM27489.1| GH10652p [Drosophila melanogaster] gi|28380590|gb|AAF50635.2| CG10077, isoform A [Drosophila melanogaster] gi|220947070|gb|ACL86078.1| CG10077-PA [synthetic construct] gi|220960420|gb|ACL92746.1| CG10077-PA [synthetic construct] Length = 818 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 213/373 (57%), Gaps = 12/373 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F + G V+ + G+ KPT IQ + P+ + D+ G+AQTG+GKT ++VLP + Sbjct: 157 IEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 216 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L+L PTRELA Q+ ++G N ++ + GG P Sbjct: 217 VHINNQPRLERGDG----PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQ 272 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LERG +++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + Sbjct: 273 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQ L++SAT E+++++E FL N ++ + + S +A V + K L Sbjct: 333 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 392 Query: 235 LQQLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 ++ L S + IIF KK V + ++ +QG+ CAIHG+ Q+ R +LS+F+ Sbjct: 393 IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 452 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL + Sbjct: 453 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 512 Query: 354 I-KHIDAIEKLIE 365 K D I+ L E Sbjct: 513 ANKANDLIQVLRE 525 >gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4] gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4] Length = 474 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/407 (35%), Positives = 225/407 (55%), Gaps = 21/407 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L ++ + GY + TPIQ ++PL+L DV A+TG+GKTA+F + +L+ Sbjct: 17 FSSLHLKIHMLKNLASLGYAEMTPIQAHSLPLILAGKDVIAKAKTGSGKTAAFGIGLLSH 76 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 L+ +RV+ L+L PTRELA QV + + N+ V L GG+PF Q LE Sbjct: 77 LDATSSRVQ---ALVLCPTRELADQVGKELRRLARFTDNIKVLTLCGGVPFGPQLGSLEH 133 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRILDH RG L + ++ LV+DEADRMLDMGF I + P +QTL Sbjct: 134 GAHIVVGTPGRILDHLRRGSLDLTCLQTLVLDEADRMLDMGFQDEISALIDATPKKKQTL 193 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT + + +S P + V+ + + + + ++ A + + Sbjct: 194 LFSATYPEAIAAMSATIQHEPVAVSVDEVHDESAIEQVLYEVDKEERTEAVARILGHYRP 253 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + T+ +FCN K + +L K+GFS AIHG+++QR R ++L F ++ ++VA Sbjct: 254 ESTL----VFCNTKIECQEVADALVKRGFSALAIHGDLEQRERDQVLVRFANKSVSVLVA 309 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI ++ V N+++ E +IHRIGRTGRAG G +LV ++ + + AIE Sbjct: 310 TDVAARGLDIKELAAVINYELSRDPEIHIHRIGRTGRAGETGLGLSLVTAQESRRVQAIE 369 Query: 362 KLIEKKVDWLNGDLSSLN--------PPLEKIDIAQHNHARKNNPIP 400 + + G+L+SL PP+ + I + RKN P Sbjct: 370 TALGTPIP--RGELASLTIAAGGPLAPPMVTLCI---DGGRKNKMRP 411 >gi|193071050|ref|ZP_03051977.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019] gi|192955637|gb|EDV86113.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019] Length = 421 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|254525036|ref|ZP_05137091.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14] gi|219722627|gb|EED41152.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14] Length = 565 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 221/375 (58%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58 M F+ L P + + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ Sbjct: 1 MTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVV 60 Query: 59 --MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +LT + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q Sbjct: 61 NRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQR 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 121 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 180 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 RQTLLFSAT++ + +++ + P+++ V + TA + + +K Sbjct: 181 ERTIRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIY--FPADDEKIP 238 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + + ++F N K V + SLEK G+ V + G++ Q+ R +L+ F++ Sbjct: 239 LLLGLLSRSEGART-MVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQK 297 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I + +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 298 GQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 357 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 358 AMGLPDIEAYIEQKI 372 >gi|16762215|ref|NP_457832.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767190|ref|NP_462805.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143704|ref|NP_807046.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62182390|ref|YP_218807.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617032|ref|YP_001590997.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553316|ref|ZP_02347066.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994610|ref|ZP_02575701.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234235|ref|ZP_02659293.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238371|ref|ZP_02663429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244966|ref|ZP_02669898.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263194|ref|ZP_02685167.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194445390|ref|YP_002043152.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449027|ref|YP_002047935.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194737374|ref|YP_002116850.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251034|ref|YP_002148844.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204930263|ref|ZP_03221240.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354515|ref|YP_002228316.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859126|ref|YP_002245777.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585737|ref|YP_002639536.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|61230470|sp|P0A2P0|RHLB_SALTY RecName: Full=ATP-dependent RNA helicase rhlB gi|61230478|sp|P0A2P1|RHLB_SALTI RecName: Full=ATP-dependent RNA helicase rhlB gi|81309537|sp|Q57HT6|RHLB_SALCH RecName: Full=ATP-dependent RNA helicase rhlB gi|189040036|sp|A9MXF3|RHLB_SALPB RecName: Full=ATP-dependent RNA helicase rhlB gi|226739543|sp|B5EZ40|RHLB_SALA4 RecName: Full=ATP-dependent RNA helicase rhlB gi|226739545|sp|B5QVH2|RHLB_SALEP RecName: Full=ATP-dependent RNA helicase rhlB gi|226739546|sp|B5RFS3|RHLB_SALG2 RecName: Full=ATP-dependent RNA helicase rhlB gi|226739547|sp|B4TB13|RHLB_SALHS RecName: Full=ATP-dependent RNA helicase rhlB gi|226739548|sp|B4SZ26|RHLB_SALNS RecName: Full=ATP-dependent RNA helicase rhlB gi|226739550|sp|B4TNT3|RHLB_SALSV RecName: Full=ATP-dependent RNA helicase rhlB gi|254797690|sp|C0Q2V9|RHLB_SALPC RecName: Full=ATP-dependent RNA helicase rhlB gi|25513028|pir||AG0922 probable ATP-dependent RNA helicase rhlB [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16422482|gb|AAL22764.1| putative helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504519|emb|CAD09401.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139339|gb|AAO70906.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62130023|gb|AAX67726.1| putative helicase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366396|gb|ABX70164.1| hypothetical protein SPAB_04860 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404053|gb|ACF64275.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407331|gb|ACF67550.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712876|gb|ACF92097.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197214737|gb|ACH52134.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197288752|gb|EDY28127.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320667|gb|EDZ05869.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274296|emb|CAR39317.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322216|gb|EDZ10055.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327555|gb|EDZ14319.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331809|gb|EDZ18573.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336231|gb|EDZ22995.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348300|gb|EDZ34931.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710929|emb|CAR35295.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470265|gb|ACN48095.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249043|emb|CBG26903.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996196|gb|ACY91081.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160435|emb|CBW19964.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915038|dbj|BAJ39012.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225440|gb|EFX50497.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322716883|gb|EFZ08454.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132267|gb|ADX19697.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326629650|gb|EGE35993.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990755|gb|AEF09738.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 421 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+VV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIESYIGHSI 379 >gi|313205812|ref|YP_004044989.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM 15868] gi|312445128|gb|ADQ81483.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM 15868] gi|315022792|gb|EFT35816.1| Cold-shock DEAD-box protein A [Riemerella anatipestifer RA-YM] Length = 554 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 217/360 (60%), Gaps = 11/360 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F++ LSP+++ AV + G+ PT IQ ++IP +L D+ +AQTGTGKTA+F LP+L Sbjct: 4 FSESNLSPEILKAVGEMGFETPTEIQKQSIPFILSDVRDLIALAQTGTGKTAAFSLPILD 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 +++ ++++ L+L PTREL Q+A + + Y K N+ + GG Q + L Sbjct: 64 MIDDTSRKIQL---LVLCPTRELCLQIAKDIKNYSKYQPNIKSVAVYGGSSITDQIRSLR 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR++D NR L ++I LV+DEAD ML MGF ++ I S P T+QT Sbjct: 121 DKPQIIVGTPGRVIDLINRKALDFSSIHWLVLDEADEMLSMGFKDDLETILSETPETKQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM E++++S+++L NP RI V + ++ + I H + Y +K L++L+ Sbjct: 181 LLFSATMNKEVERISKSYLTNPHRISVGSINAVKKNISHEYYV--VNYRQKKEALKRLID 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + + IIFC + + L + G++ A+HG++ Q R ++ F+ I ++V Sbjct: 239 ANPN-QYSIIFCRTRMEAKEVADYLMQNGYAADALHGDLSQAQRDTVMLKFRLKNIDILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---IKHI 357 A+D+AARGLD+ + HV ++ +P+ E ++HR GRTGRAG+ G + L+ E+ +KHI Sbjct: 298 ATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEETRKLKHI 357 >gi|288928387|ref|ZP_06422234.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str. F0108] gi|288331221|gb|EFC69805.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str. F0108] Length = 447 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 221/378 (58%), Gaps = 18/378 (4%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L+ V+ A+ D + TPIQ IP +L+ D+ G+AQTGTGKTA+++LP++ Sbjct: 1 MTFEELDLNDNVLDALYDMRFETCTPIQEHCIPQILEGKDILGVAQTGTGKTAAYLLPIM 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI----GGIPFEAQN 116 ++L+ G +I+ PTRELA Q+ + +G + +L I G ++ + Sbjct: 61 SMLDDGGFPHDAINCIIMSPTRELAQQIDQAMQGFGYYLDSVSSLPIYGGNDGNRYDQEI 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L GAD++I TPGR + H G + ++ + V+DEADRMLDMGF I I +P Sbjct: 121 KSLRLGADIIIATPGRFISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPP 180 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 T QT++FSATM +++++++ L+NP I++ S AE I AQ + C Q Sbjct: 181 TCQTIMFSATMPPKIEQLAKTLLKNPVEIKLAV-SKPAEKI--------AQKAYLCYEPQ 231 Query: 237 QLLQSQDTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 +L +D K G IIF +K+ V + +L + + +H ++ Q R +++ F Sbjct: 232 KLKVLEDIFKAGHLNRVIIFSGKKQKVKEINRALVRMKINSDEMHSDLSQEERDQVMFKF 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K G ++VA+D+ +RG+DI D+ V N+DVP+ E+Y+HRIGRT RA R G A TL++ Sbjct: 292 KSGATDVLVATDILSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARAERDGVAITLISD 351 Query: 352 EDIKHIDAIEKLIEKKVD 369 +D+ + IE+ +EK+++ Sbjct: 352 QDVYYFQQIERFLEKEIE 369 >gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum] Length = 622 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 207/373 (55%), Gaps = 13/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D+ L P ++ + Y +P+ IQ + +P+ L D+ G A+TG+GKTA+F +PML Sbjct: 120 FNDMCLHPSIMKDIAYHEYTRPSSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMLQH 179 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 +++ R P L+L PTRELA Q+ + + ++ +L +++GG E Q +L Sbjct: 180 CLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQRSEL 239 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G ++ + TPGR +DH +G ++ I +V+DEADRMLDMGF P I+ I +P Q Sbjct: 240 RAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQ 299 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E++ +++ +L NP +++V SS + V S+K L LL Sbjct: 300 TLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSG--SEKIDRLLDLL 357 Query: 240 --QSQDTMKNG------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++ K G I+F +K + +L QG S ++HG Q R L NF Sbjct: 358 VEEASQAEKCGHRFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGHSQNEREAALQNF 417 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + + ++VA+D+A+RGLD+ V HV N D+P E+YIHRIGRTGRAG G A + Sbjct: 418 RSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTD 477 Query: 352 EDIKHIDAIEKLI 364 D+ + I K I Sbjct: 478 RDMFLVTNIRKAI 490 >gi|119582642|gb|EAW62238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo sapiens] gi|119582646|gb|EAW62242.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo sapiens] Length = 883 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|312969491|ref|ZP_07783693.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75] gi|312286038|gb|EFR13956.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75] Length = 421 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPGRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A] gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 857 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/359 (39%), Positives = 207/359 (57%), Gaps = 3/359 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ LS ++ + G+ KPTPIQ KTIP+ L DV G A TG+GKTA+FV+P+L Sbjct: 295 FQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILER 354 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +V R +IL PTRELA Q K + ++ L +GG+ + Q +L Sbjct: 355 LLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLR 414 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV+I TPGR +DH N ++ IEILV+DEADRML+ GF + I + +P +RQT+ Sbjct: 415 PDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 474 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240 LFSATMT + ++ L P RI ++ TA T+ FV + SK+ L + + Sbjct: 475 LFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICK 534 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + T + IIF QKK + G S +HG+++Q R++ + +F++G + ++ Sbjct: 535 TIYTERV-IIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLL 593 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 A+DLA+RGLDI V V N++ P E Y+HR+GRT RAGR G A TL A+ D K + A Sbjct: 594 ATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKA 652 >gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii] gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii] Length = 506 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 144/393 (36%), Positives = 221/393 (56%), Gaps = 27/393 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD+ L P + + +VKPTP+Q IP+ L D+ AQTG+GKTA+F P++ Sbjct: 54 FADVDLGPVLNENIRRCKFVKPTPVQKHAIPISLHGRDLMACAQTGSGKTAAFCFPIIAG 113 Query: 63 L----------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 + +G +R P LIL PTREL++Q+ D +K+ + V ++ GG Sbjct: 114 ILWNFPPGSRHARG-SRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGTSV 172 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-- 170 ++Q K+LERG D+L+ TPGR+ D RG++ ++ + L +DEADRMLDMGF P I+ I Sbjct: 173 QSQLKELERGVDILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKIVE 232 Query: 171 -TSLVPF-TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228 T + P RQT+LFSAT E+Q+++ +FL N + V S+ + I Y Sbjct: 233 NTDMPPAGQRQTMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQR--VEYVHD 290 Query: 229 SKKCALLQQLLQSQDTMK-NG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 K ++L ++ +Q NG ++F K+ +L L + G S IHG+ Q Sbjct: 291 VDKRSMLMDMIHAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQV 350 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R L +F+ G ++VA+D+AARGLDIP V HV N+D+P+ ++Y+HRIGRTGRAG+ Sbjct: 351 EREHALRSFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKS 410 Query: 343 GKAFTLVAKEDIK----HIDAIEKLIEKKVDWL 371 G A +D +D +++ ++ +WL Sbjct: 411 GFATAFFTDKDTSLARPLVDLMQEANQQVPEWL 443 >gi|293413224|ref|ZP_06655886.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354] gi|291468172|gb|EFF10669.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354] Length = 427 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 17 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 76 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 77 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 136 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 137 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 196 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 197 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 253 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 254 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 312 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 313 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 372 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 373 NLPAIETYIGHSI 385 >gi|169234830|ref|NP_001108495.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Rattus norvegicus] gi|165971701|gb|AAI58856.1| Ddx49 protein [Rattus norvegicus] Length = 480 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 154/416 (37%), Positives = 231/416 (55%), Gaps = 17/416 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L LS +V G +PTP+Q+ IP +L+ D G A+TG+GKTA+FVLP+L Sbjct: 4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + L+L PTRELA Q+A+ F GK L +++GG+ Q +L R Sbjct: 64 LSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRK 120 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTR 178 V+I TPGR+ DH M I LV+DEADR+L+ G F ++ I S VP R Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARR 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT+TD L+++ P E E ++ ++ + K A L L Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQATVRMVEQLDQRYLLVPEKV--KDAYLVHL 238 Query: 239 LQS-QDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 +Q+ QD +++ IIF N K LC L K F A+H + Q+ R L+ FK T Sbjct: 239 VQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSST 298 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++A+D+A+RGLDIP V V N + P + YIHR+GRT RAGR G+A TLV + DI Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKK 411 + AIE+ I++++ L + + + L ++++ R+ I +++ FD +K+ Sbjct: 359 LLHAIEEEIKQQLAELAVEEAQVLQILTQVNV-----VRRECEIKLEASHFDEKKE 409 >gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88] gi|143462251|sp|A2RB17|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3 gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger] Length = 467 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 214/368 (58%), Gaps = 8/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F +LG+ ++ A GY PTPIQ ++IPL L+ D+ G+A+TG+GKTA+F LP+L Sbjct: 50 FKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQA 109 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++EK + L+L PTRELA Q++ +FE G + + +++GG+ +Q+ L + Sbjct: 110 LMEKPQPFF----GLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGK 165 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH K + N++ LV+DEADR+LDM F P + I ++P R+T Sbjct: 166 KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 225 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM+ +++ + L NP R+ V+T S +T+ + K L L Sbjct: 226 FLFSATMSSKVESLQRASLSNPLRVSVST--SKYQTVSTLLQSYLFIPQKHKDLYLVYLL 283 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ ++ IIF L L GF +HG + Q +R+ L F+ + ++V Sbjct: 284 NEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILV 343 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP V V NFD+P + +Y+HR+GRT RAG+ G A + VA+ D++ I Sbjct: 344 ATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRI 403 Query: 361 EKLIEKKV 368 E + KK+ Sbjct: 404 EGALGKKL 411 >gi|18309844|ref|NP_561778.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens str. 13] gi|18144522|dbj|BAB80568.1| probable ATP-dependent RNA helicase [Clostridium perfringens str. 13] Length = 478 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 221/364 (60%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ A+ + GY P+ +Q +IP +L+ D+ +QTG+GKTASF +P Sbjct: 1 MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK + + L+L PTRELA QV D G+ + A + G PF Q ++L+ Sbjct: 59 -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR+ DH RG L ++ + +VIDEAD+ML MGFI I++I + + T Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT + E++++ E +++NP +EV + + IE + + +K+ AL + L Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKEKALWKCLYA 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+FCN + V ++ L+ +G + +HG+++Q+ R++++ NF++ +++V Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ + + V N++VP E+Y+HRIGRTGRAGR GKA T V + K+++ + Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354 Query: 361 EKLI 364 E+ I Sbjct: 355 EEYI 358 >gi|170769827|ref|ZP_02904280.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627] gi|170121265|gb|EDS90196.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627] Length = 421 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|168467669|ref|ZP_02701506.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822969|ref|ZP_02834969.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197265404|ref|ZP_03165478.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200386552|ref|ZP_03213164.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238912924|ref|ZP_04656761.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|195630001|gb|EDX48661.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197243659|gb|EDY26279.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603650|gb|EDZ02195.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205340707|gb|EDZ27471.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088331|emb|CBY98091.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322612998|gb|EFY09949.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617414|gb|EFY14314.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625594|gb|EFY22416.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627017|gb|EFY23810.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631267|gb|EFY28030.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638300|gb|EFY34999.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642850|gb|EFY39436.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646994|gb|EFY43496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650382|gb|EFY46795.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656328|gb|EFY52622.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657553|gb|EFY53823.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665964|gb|EFY62145.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666703|gb|EFY62880.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671054|gb|EFY67184.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679239|gb|EFY75291.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681643|gb|EFY77670.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686030|gb|EFY82018.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192656|gb|EFZ77884.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197837|gb|EFZ82968.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203726|gb|EFZ88747.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205399|gb|EFZ90373.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210770|gb|EFZ95646.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215936|gb|EGA00669.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221429|gb|EGA05847.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227329|gb|EGA11496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231738|gb|EGA15849.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236153|gb|EGA20230.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239610|gb|EGA23658.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244294|gb|EGA28302.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249609|gb|EGA33521.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250299|gb|EGA34185.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256506|gb|EGA40237.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259796|gb|EGA43429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265204|gb|EGA48702.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268367|gb|EGA51839.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 421 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+VV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIESYIGHSI 379 >gi|293468098|ref|ZP_06664510.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088] gi|291321476|gb|EFE60914.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088] Length = 427 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 17 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 76 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 77 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 136 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 137 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 196 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 197 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 253 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 254 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 312 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 313 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 372 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 373 NLPAIETYIGHSI 385 >gi|254578784|ref|XP_002495378.1| ZYRO0B09856p [Zygosaccharomyces rouxii] gi|238938268|emb|CAR26445.1| ZYRO0B09856p [Zygosaccharomyces rouxii] Length = 540 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/356 (35%), Positives = 204/356 (57%), Gaps = 11/356 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ PT IQ + P+ L D+ G+A TG+GKT S+ LP + Sbjct: 112 FDEAGFPDYVLKEVKAEGFAAPTGIQCQGWPMALSGRDMVGVAATGSGKTLSYCLPAIVH 171 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+G++ + + GG+P Q Sbjct: 172 INAQPLLAPGDG----PVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPRGQQI 227 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RGA+++I TPGR++D K + + LV+DEADRMLDMGF P I+ I + Sbjct: 228 RDLARGAEIVIATPGRLIDMLEINKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 287 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL++SAT E+++++ ++L +P ++++ + +A V +++ K+ L + Sbjct: 288 DRQTLMWSATWPKEVKQLARDYLTDPIQVQIGSLELSASHTIKQVVEVISEFEKRDRLSK 347 Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + S+D ++F + K+ ++ L + G+S AIHG+ DQR R +L FK G Sbjct: 348 HLEIASEDQDSKVLVFASTKRTCDDITQYLRQDGWSALAIHGDKDQRERDWVLEEFKNGR 407 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +MVA+D+AARG+D+ + +V N+D+P E+Y+HRIGRTGRAG G A + + Sbjct: 408 SPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGAKGTAISFFTE 463 >gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001] Length = 480 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/377 (37%), Positives = 214/377 (56%), Gaps = 24/377 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG++ + A + GY KPTPIQ ++IP L D+ G+A+TG+GKTA+F LP++ Sbjct: 54 FKDLGVADSLCDACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKTAAFALPVIQA 113 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEK +A L+L PTRELAAQ+ FE G +L A+++GG+ AQ L + Sbjct: 114 LLEKPQAFF----GLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGK 169 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR++DH + K + +++ LV+DEADR+LDM F P I I +P R+T Sbjct: 170 KPHVIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRT 229 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAET-------IEHCFVATYAQYSKKC 232 LFSATM+ +++ + L++P R+ +++ T T I H TY Y Sbjct: 230 FLFSATMSSKIESLQRASLRDPVRVSISSNKYQTVSTLLQYYLFIPHQLKDTYLVY---- 285 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L ++ K ++F L L GF +HG ++Q +R+ L+ F+ Sbjct: 286 ------LANEFAGKKLVVFTRTVSETQRLAILLRTLGFGAIPLHGQLNQTARLGALNKFR 339 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+D+AARGLDIP V V N D+ ++ ++HRIGRT RAG+ G A +LV + Sbjct: 340 AGERSILVATDVAARGLDIPLVDVVINHDLAQDSKTHVHRIGRTARAGKSGIALSLVTQY 399 Query: 353 DIKHIDAIEKLIEKKVD 369 D++ IE + KK D Sbjct: 400 DLEIWLRIEAALGKKQD 416 >gi|15604513|ref|NP_221031.1| putative ATP-dependent RNA helicase RHLE (rhlE) [Rickettsia prowazekii str. Madrid E] gi|3861207|emb|CAA15107.1| PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE) [Rickettsia prowazekii] gi|292572297|gb|ADE30212.1| ATP-dependent RNA helicase RhlE [Rickettsia prowazekii Rp22] Length = 407 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 213/364 (58%), Gaps = 13/364 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 3 NFNLSKELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLIDAFI 62 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K Y + A+LIGG P Q +L++ Sbjct: 63 KNKTTA-----LILVPTRELATQIHSTLNKVTTAYKMNSAVLIGGEPMFKQFMQLKKNPK 117 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 V+I TPGRI++H NR L + +I I+V+DE DRMLDMG ++ I +P RQ L+FS Sbjct: 118 VIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + VS+ +L NP RI V + A I E V+ ++S+ L +QL Sbjct: 178 ATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSE---LTKQL---G 231 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + + IIF K++ L L+ + AIHG++ Q R +++ +F++ ++MVA+ Sbjct: 232 NRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVAT 291 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ AI++ Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAIDR 351 Query: 363 LIEK 366 L+ K Sbjct: 352 LVNK 355 >gi|307204462|gb|EFN83169.1| ATP-dependent RNA helicase DDX42 [Harpegnathos saltator] Length = 770 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 136/355 (38%), Positives = 208/355 (58%), Gaps = 7/355 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F G ++ A+ + +PTPIQ + +P L D+ GIA+TG+GKTA+F+ PML Sbjct: 256 FGHFGFDDALMKAIRKNEFTQPTPIQAQAVPAALNGRDIIGIAKTGSGKTAAFIWPMLVH 315 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P LIL PTREL+ Q+ +K+GK YN+ V GG Q+K LE Sbjct: 316 IMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALE 375 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA++++ TPGR++D + + LV+DEADRM DMGF P +++I + V RQT Sbjct: 376 SGAEIVVATPGRMIDLVKMKATNLIRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 435 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++K++ + L +P RI + + + K LLQ L++ Sbjct: 436 LLFSATFKKRVEKLARDVLMDPVRIVQGDVGEANTDVTQHVIMFHNPGGKWNWLLQNLVE 495 Query: 241 --SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 S ++ +IF +K N L ++L+ + F V +HG++DQ R K+++ FK+ + Sbjct: 496 FLSAGSL---LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVST 552 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +VA+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TLV ++D Sbjct: 553 LVATDVAARGLDIPHIKTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKD 607 >gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25] gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25] Length = 407 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L ++ A+ + GY +PT IQ + IP L D+ A TGTGKTA+FVLP L Sbjct: 5 FAELDLDQNLLEAIEEMGYKRPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA Q+AD KN L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+ ++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239 LFSAT+ + ++ + + L +P I+ +P + I + A A++ K LL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH--KLELLKHII 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F ++ + L LE I G + Q R +S F++GT+ ++ Sbjct: 243 TQQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A ++V D +D Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360 Query: 360 IEKLIEKKV 368 + + +++ + Sbjct: 361 VARYVKEDI 369 >gi|317404068|gb|EFV84523.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54] Length = 462 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 211/367 (57%), Gaps = 12/367 (3%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +++PL+L+ D+ A+TG+GKTA+F L +L L+ R P+ L+L Sbjct: 23 GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQKLDPARL---APQALLLC 79 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N+ + L GG Q + L RGA +++ TPGRI DH Sbjct: 80 PTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAESLARGAHIVVGTPGRIQDHLE 139 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG L ++ + LV+DEADRM+DMGF I I S P RQTLLFSAT D ++K+S F Sbjct: 140 RGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAKRQTLLFSATYPDNIRKLSARF 199 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVAT-YAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257 L+NP ++V A IE F A+ A L + T+ FCN K Sbjct: 200 LRNPAEVKVEA-QHDASRIEQIFYEIDPAERLDAVATLLAHFRPVSTLA----FCNTKIR 254 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 +L L+ G S A++G+++QR R +IL F + ++VA+D+AARGLDI ++G V Sbjct: 255 SHDLVERLQAAGISALALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAV 314 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSS 377 N DV E ++HRIGR+GR + G A +L + ++++ + IE+ + W GDL S Sbjct: 315 INVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLIEQYQGAPLTW--GDLKS 372 Query: 378 LNPPLEK 384 L P ++ Sbjct: 373 LRPKADR 379 >gi|297521198|ref|ZP_06939584.1| ATP-dependent RNA helicase RhlB [Escherichia coli OP50] Length = 425 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 15 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 74 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 75 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 134 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 135 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 194 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 195 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 251 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 252 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 310 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 311 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 370 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 371 NLPAIETYIGHSI 383 >gi|237732562|ref|ZP_04563043.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2] gi|226908101|gb|EEH94019.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2] Length = 442 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 139/354 (39%), Positives = 210/354 (59%), Gaps = 6/354 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ + G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVA++ + KN +L VA + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHMEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + + +E L++DEADRMLDMGF I++I + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239 LFSAT+ D ++ +E L++P +EV+ ST E + H F K A+L LL Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSADPSTRERKKIHQFYYRADDIEHKTAMLIHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++ I+F +++ V L L + G + C + G + Q R + + +G + ++ Sbjct: 244 KQPEATRS-IVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARG+DIPDV HVFNFD+P + Y+HRIGRTGRAGR G A +LV D Sbjct: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHD 356 >gi|313896720|ref|ZP_07830268.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974637|gb|EFR40104.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral taxon 137 str. F0430] Length = 423 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 214/370 (57%), Gaps = 10/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M FA++G+S + + + G PTP+Q + +P + DV AQTGTGKT +F+LP Sbjct: 2 MPFAEIGVSEALCTLLKNRGISVPTPVQERAVPAMRVGRDVIAQAQTGTGKTLAFLLP-- 59 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +LEK + + + + L++ PTRELA Q+A E ++ L+ GG E Q +KL Sbjct: 60 -VLEKIKPQGAVVQALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLR 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 R ++I TPGR+LDH RG L + ++ +V+DEAD ML +GFI ++ + Q Sbjct: 119 RHPQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDYQL 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ--YSKKCALLQQL 238 LFSATM + + ++++ F+ NP RI++ +T E IE ++ + + CA + Sbjct: 179 ALFSATMPERIVQLTKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCASI--- 235 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +++ ++FC K+ L +L +G+ V A+ GN+ Q R +L F+ +Q+ Sbjct: 236 --NEEAPYLAMVFCATKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQI 293 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 + A+D+AARGLDI V HV+N+D+P +YIHRIGRTGRAG G+A TLV + + Sbjct: 294 LCATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLR 353 Query: 359 AIEKLIEKKV 368 IE +++++ Sbjct: 354 KIEAALKERL 363 >gi|156935889|ref|YP_001439805.1| ATP-dependent RNA helicase RhlB [Cronobacter sakazakii ATCC BAA-894] gi|189040029|sp|A7MQI2|RHLB_ENTS8 RecName: Full=ATP-dependent RNA helicase rhlB gi|156534143|gb|ABU78969.1| hypothetical protein ESA_03777 [Cronobacter sakazakii ATCC BAA-894] Length = 421 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/390 (38%), Positives = 218/390 (55%), Gaps = 15/390 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P VV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + + + L GG ++ Q K Sbjct: 71 LLSHPAAENRQVNQPRALIMAPTRELAVQIHSDAEPLAEATGIKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAT 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 R +LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 ERLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKK--VDWLNGD--LSSLNPP 381 ++ AIE I V N D LS L PP Sbjct: 367 NLPAIETYIGHSIPVSKYNPDALLSELPPP 396 >gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01] gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01] Length = 407 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 212/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L ++ A+ + GY +PT IQ + IP L D+ A TGTGKTA+FVLP L Sbjct: 5 FAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA Q+AD KN L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+ ++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239 LFSAT+ + ++ + + L +P I+ +P + I + A A++ K LL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH--KLELLKHII 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F ++ + L LE I G + Q R +S F++GT+ ++ Sbjct: 243 TQQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A ++V D +D Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360 Query: 360 IEKLIEKKV 368 + + +++ + Sbjct: 361 VARYVKEDI 369 >gi|40788370|dbj|BAA34521.2| KIAA0801 protein [Homo sapiens] Length = 1058 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 400 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 459 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 460 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 515 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 516 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 575 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 576 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 635 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 636 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 692 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 693 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 752 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 753 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 805 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 806 FDETEQALA-NERKKLQKAALGLQDSD 831 >gi|269104578|ref|ZP_06157274.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161218|gb|EEZ39715.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] Length = 409 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 139/375 (37%), Positives = 219/375 (58%), Gaps = 9/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L LSP ++ A L PT IQ IP +++ DV +AQTG+GKT ++ LP+L Sbjct: 1 MSFSTLPLSPSLIHA-LPNELNTPTDIQRHAIPALVKHQDVLALAQTGSGKTYAYGLPLL 59 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 ++ + +++ LIL PTREL QV + + + A+L GGI E Q + L Sbjct: 60 QQIDPSQPKIQ---ALILVPTRELTTQVHQSLNTIAEKMAIRTAILCGGISQEQQEETLN 116 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I T GR+LD ++G++ +++I+ V+DEADR+LDMGF P IQ I +P RQT Sbjct: 117 SQPQLVIATTGRLLDALSKGQVSLSHIKSWVLDEADRLLDMGFWPDIQKIIQQLPAKRQT 176 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLL 239 LFSAT+ ++L+ +++ L P RIE +S +TI E ++ SK AL+ L Sbjct: 177 ALFSATLPEQLESLTQEVLFKPVRIEAQKTNSVVDTISEQLYLVNKG--SKPQALIA--L 232 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + ++F + N LC L K G A+HG+ +Q R +IL++FK + ++ Sbjct: 233 LKQYPTQQTLVFIGARDNADALCKRLMKAGVQAAALHGHKEQTEREQILADFKAKKLNVV 292 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+ ARG+ I + V NFD+P+ A Y+HR+GRTGRAG +G A +LV + + + A Sbjct: 293 IATDVLARGIHIEQLPLVINFDLPSNAATYVHRVGRTGRAGNNGLALSLVCHGETEFLTA 352 Query: 360 IEKLIEKKVDWLNGD 374 I +L ++ ++ N D Sbjct: 353 IRQLTQRPLELHNLD 367 >gi|15804370|ref|NP_290410.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 EDL933] gi|15833967|ref|NP_312740.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. Sakai] gi|168764143|ref|ZP_02789150.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4501] gi|217325465|ref|ZP_03441549.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. TW14588] gi|32363366|sp|Q8XAT4|RHLB_ECO57 RecName: Full=ATP-dependent RNA helicase rhlB gi|12518640|gb|AAG58974.1|AE005609_6 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933] gi|13364188|dbj|BAB38136.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai] gi|189365822|gb|EDU84238.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4501] gi|217321686|gb|EEC30110.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. TW14588] gi|326347935|gb|EGD71649.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. 1044] Length = 421 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHC 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG +G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGANGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|320325391|gb|EFW81456.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea str. B076] gi|320327468|gb|EFW83481.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea str. race 4] gi|330877269|gb|EGH11418.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea str. race 4] Length = 445 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 213/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ R +IL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 62 L-IGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+L+ N G L + ++E+LV+DEADRMLDMGF ++ + QT+ Sbjct: 121 VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM 180 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L++P+ ++VN+ S A H + K+ L L Sbjct: 181 LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVL--NWLL 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T + IIF N K L L + +HG+ Q+ R + K+G ++MV Sbjct: 239 ANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKYQKDRKAAIDRLKQGGAKIMV 298 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P ++Y+HR+GRTGRAG G A +L+ D + ++ Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSV 358 Query: 361 EKLIEKKVD 369 E+ +++ + Sbjct: 359 ERYLKQSFE 367 >gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS] gi|118595828|sp|Q1E1N5|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3 Length = 474 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 213/373 (57%), Gaps = 16/373 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ + A GY PT IQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 50 FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 107 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P++ L+L PTRELA Q++ FE G ++ A+++GG+ +Q L Sbjct: 108 ----QALMDKPQSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIAL 163 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + +++ LV+DEADR+LD+ F P + I ++P R Sbjct: 164 GKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKER 223 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +T LFSATM+ +++ + L NP R+ V N + + +++C + + L Sbjct: 224 RTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLL 283 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q IIF L L GF +HG + Q +R+ L F+ + Sbjct: 284 NEFPGQSV----IIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSR 339 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDIP V V N+D+P+ ++ YIHR+GRT RAG+ G+AF+LV + D++ Sbjct: 340 NILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEI 399 Query: 357 IDAIEKLIEKKVD 369 IE + K++D Sbjct: 400 WQRIEAALGKELD 412 >gi|198474199|ref|XP_001356589.2| GA10248 [Drosophila pseudoobscura pseudoobscura] gi|198138291|gb|EAL33653.2| GA10248 [Drosophila pseudoobscura pseudoobscura] Length = 828 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 211/382 (55%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + G P+++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ Sbjct: 402 WNESGFPPEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 461 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 ++ R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q Sbjct: 462 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQG 521 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P Sbjct: 522 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 581 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++++ ++L+ P + + + Sbjct: 582 TNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSMG 641 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E E V + K+ L++ L + D IIF NQKK L LEK G++ Sbjct: 642 KPTERTEQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYN 698 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 C +HG Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y H Sbjct: 699 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTH 758 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG+ G A + V K+D Sbjct: 759 RIGRTGRAGKTGCAISFVTKDD 780 >gi|194758757|ref|XP_001961625.1| GF15062 [Drosophila ananassae] gi|190615322|gb|EDV30846.1| GF15062 [Drosophila ananassae] Length = 819 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 131/382 (34%), Positives = 213/382 (55%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +++ G +++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ Sbjct: 393 WSESGFPREIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 452 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 ++ R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q Sbjct: 453 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQG 512 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P Sbjct: 513 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 572 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 + RQT++F+ATM +++++ ++L+ P + + + Sbjct: 573 SNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 632 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E E V + K+ L++ L +S D IIF NQKK L LEK G++ Sbjct: 633 KPTERTEQ-IVYMMGENDKRKKLMEILSRSIDP--PVIIFVNQKKGADVLAKGLEKLGYN 689 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 C +HG Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y H Sbjct: 690 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTH 749 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG++G A + V K+D Sbjct: 750 RIGRTGRAGKNGVAISFVTKDD 771 >gi|168207624|ref|ZP_02633629.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str. JGS1987] gi|170661029|gb|EDT13712.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str. JGS1987] Length = 478 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 221/364 (60%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ A+ + GY P+ +Q +IP +L+ D+ +QTG+GKTASF +P Sbjct: 1 MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK + + L+L PTRELA QV D G+ + A++ G PF Q ++L+ Sbjct: 59 -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAVIFGKQPFNEQIRELK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR+ DH RG L ++ + +VIDEAD+ML MGFI I++I + + T Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT + E++++ E +++NP +EV + + IE + + +K AL + L Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYA 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+FCN + V ++ L+ +G + +HG+++Q+ R++++ NF++ +++V Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ + + V N++VP E+Y+HRIGRTGRAGR GKA T V + K+++ + Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354 Query: 361 EKLI 364 E+ I Sbjct: 355 EEYI 358 >gi|332305447|ref|YP_004433298.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172776|gb|AEE22030.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 412 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 215/367 (58%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F L L ++ AV D GY +PT IQ IP ++ D+ A TGTGKTA+F+LP+ Sbjct: 2 FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R R LIL PTRELA QV + + + ++ ++ GGI + + LE+ Sbjct: 62 LLDYPRRHPGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDKETLEK 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+L+ TPGR+ +H + +IE L++DEADRMLDMGF + I++ + +Q++ Sbjct: 122 NLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRKQSM 181 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239 LFSAT+ + + +++ L +P +E+ SS E + H ++ K ALL+ +L Sbjct: 182 LFSATLEGAGISRFAKDILNDP--VELEAASSRKEQGKIHQWLHLADDAKHKYALLKHIL 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +++ ++F + + L LE+ GF+VC + G + Q R ++ F+ G ++++ Sbjct: 240 THQ--VESAVVFVKTRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ ++ HV N+D+P A+ Y+HRIGRTGRAG G A +LV DI + Sbjct: 298 IATDVAARGIDVENISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLVEAHDIAIVPK 357 Query: 360 IEKLIEK 366 IE+ E+ Sbjct: 358 IERYTEQ 364 >gi|288556690|ref|YP_003428625.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] gi|288547850|gb|ADC51733.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] Length = 487 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 216/366 (59%), Gaps = 10/366 (2%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML--TI 62 ++ +S +V A+ Y K T +Q K +P+ + DV AQTG+GKTA++ +P+ I Sbjct: 14 EIQISKEVQKALDLLNYKKLTNVQEKVVPVAIAEKDVIVKAQTGSGKTAAYAIPLCEKVI 73 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E+ + P+ L+L PTRELAAQV + G+ + A + G +E Q +L++ Sbjct: 74 WEENK-----PQALVLTPTRELAAQVKEEIINIGRFKRVKAAAVYGKQSYERQKIELKQK 128 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++ TPGR+LDH + L NI LVIDEAD+ML+MGFI ++ I + +P R T+L Sbjct: 129 NHIVTGTPGRVLDHIEKNSLDTTNIRFLVIDEADQMLNMGFIDQVEAIIARIPANRVTML 188 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++++S+ + P+ IE+N+ ++ I H + A +K +L+++L ++ Sbjct: 189 FSATFPYGVEELSKRHMSLPEYIEINSTEASRPNINHAIIEVEA--DEKTDVLKKVLITE 246 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + IIFC + V L SL + + V +HG + Q R ++ FKEG + +VA+ Sbjct: 247 NP-DSCIIFCQTQVEVDKLEKSLLRSQYPVEKLHGGMKQEDRFDVMDRFKEGAFRYLVAT 305 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 +A RG+D+ D+ V N+DVP ENY+HRIGRTGRAG+ GKA TLV + +ID IE Sbjct: 306 GVAGRGIDVADIDLVINYDVPAEKENYVHRIGRTGRAGKKGKARTLVTPSEHGYIDDIED 365 Query: 363 LIEKKV 368 I +++ Sbjct: 366 FIGEQI 371 >gi|260857814|ref|YP_003231705.1| ATP-dependent RNA helicase RhlB [Escherichia coli O26:H11 str. 11368] gi|260870505|ref|YP_003236907.1| ATP-dependent RNA helicase RhlB [Escherichia coli O111:H- str. 11128] gi|257756463|dbj|BAI27965.1| ATP-dependent RNA helicase RhlB [Escherichia coli O26:H11 str. 11368] gi|257766861|dbj|BAI38356.1| ATP-dependent RNA helicase RhlB [Escherichia coli O111:H- str. 11128] gi|323155182|gb|EFZ41366.1| ATP-dependent RNA helicase rhlB [Escherichia coli EPECa14] gi|323177790|gb|EFZ63374.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1180] Length = 421 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKYRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|50122209|ref|YP_051376.1| ATP-dependent RNA helicase SrmB [Pectobacterium atrosepticum SCRI1043] gi|49612735|emb|CAG76185.1| ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 441 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 134/354 (37%), Positives = 200/354 (56%), Gaps = 4/354 (1%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F++L L ++ A+ D GY +PT IQ + IP ++ DV G A TGTGKTA+++LP+L Sbjct: 5 NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64 Query: 62 -ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +++ R + PR LIL PTRELA QVAD + + +L +A + GG+ + + Sbjct: 65 HLIDFPRKKSGPPRVLILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFS 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 DV++ T GR++ + +E L++DEADRMLDMGF I++I + +QT Sbjct: 125 ENQDVVVATTGRLMQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184 Query: 181 LLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSAT+ + ++ +E L P IE + + I + K L QL Sbjct: 185 LLFSATLEGNAIKDFAERLLNEPVEIESDPSRRERKKILQWYYRADDLKHKTTLLCHQLK 244 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q T IIF +++ V L L + G + C + G + Q R + + +G + ++ Sbjct: 245 QPDVT--RSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARG+DI DV HVFNFD+P A+ Y+HRIGRTGRAGR G A + V D Sbjct: 303 VATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHD 356 >gi|10434683|dbj|BAB14343.1| unnamed protein product [Homo sapiens] Length = 765 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 208/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 187 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 246 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 247 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 306 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 307 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 366 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 367 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 426 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 427 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 486 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y HR+GRT RAGR G++ +LV +++ K + Sbjct: 487 VATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKE 546 Query: 360 IEK 362 I K Sbjct: 547 IVK 549 >gi|296118823|ref|ZP_06837399.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM 20306] gi|295968312|gb|EFG81561.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM 20306] Length = 407 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 129/353 (36%), Positives = 207/353 (58%), Gaps = 5/353 (1%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 +G++ ++ A+ G IQ T+P+ L D+ G A+TG GKT F +P+L + Sbjct: 1 MGVAAEICDALAARGITHTFAIQELTLPIALNGTDLIGQARTGMGKTYGFGVPLLDRVFD 60 Query: 66 GRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + PR L++ PTRELA QVA++ + +A ++GG FEAQ + L G Sbjct: 61 AADVPELDGSPRALVVVPTRELAVQVANDLSIAAAQIPVRIATILGGRDFEAQQEALRAG 120 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-TSLVPFTRQTL 181 DV++ TPGRILD + R L ++ + +LV+DEAD MLD+GF+P ++ I +L QT+ Sbjct: 121 VDVVVGTPGRILDLYQRKNLRLDKVSVLVLDEADEMLDLGFLPDVEKILAALKDSPHQTM 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM + +++ F+ P I + SS + A K +L ++LQ Sbjct: 181 LFSATMPGAIVRLARTFMNRPVHIRADAESSAPTHASTQQIIFQAHRMDKLPVLSRILQV 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + ++F K+ + L GF+V A+HG+++Q++R + L+ F++GT+ ++VA Sbjct: 241 PERGRT-LVFTRTKRTAAQVAQDLADLGFTVGAVHGDLNQQAREQALAGFRDGTVPILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +D+A+RG+D+ DV HV N+ VP+ A Y+HRIGRTGRAG G A TLV +++ Sbjct: 300 TDVASRGIDVEDVTHVINYQVPDDAMTYVHRIGRTGRAGHSGTAITLVGYDEL 352 >gi|326335491|ref|ZP_08201678.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692257|gb|EGD34209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 572 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 220/371 (59%), Gaps = 10/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLT 61 F LGLS ++ A+ D G+ +P+ +Q IP++L D+ +AQTGTGKTA+F P+L Sbjct: 4 FETLGLSAPLLEAIDDLGFERPSEVQQAAIPVLLAVPTDMVALAQTGTGKTAAFGFPLLH 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 ++ + + LIL PTREL Q+A ++Y K + + + GG E Q + L+ Sbjct: 64 LINPTE---HITQGLILAPTRELCLQIASELKQYAKYMPQVHIVAIYGGASIEEQARNLK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GA +++ TPGR+ D R + + +I ++DEAD ML+MGF I+ I + P + T Sbjct: 121 KGAHIIVATPGRMQDMMRREFVSITHINYCILDEADEMLNMGFYEDIRAILAETPREKNT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKCALLQQLL 239 LFSATM E+ K+++ F+ +PK I + + ++ + H C++ Q + L++L Sbjct: 181 WLFSATMPTEVAKIAKEFMHHPKEITIGHKNQASDNVLHECYIVNGRQ---RYEALKRLA 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ + ++FC K++ + L + G++ A+HG++ Q R ++ F+ IQ++ Sbjct: 238 DANPSIFS-VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQML 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+D+ D+ HV ++ +P+ E Y HR GRTGRAG+ G + ++ K + K I Sbjct: 297 VATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSETKRIKT 356 Query: 360 IEKLIEKKVDW 370 IE++I+K ++ Sbjct: 357 IERIIQKTFEY 367 >gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Carnobacterium sp. AT7] gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Carnobacterium sp. AT7] Length = 483 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 212/360 (58%), Gaps = 7/360 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + +S ++V A+ Y PT +Q + IPL L+ DV +QTG+GKT S+ +P+ Sbjct: 7 FKEFAISDEIVTALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLCET 66 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ + P+ L+L PTRELA QV ++ G+ + + G F+ Q +L++ Sbjct: 67 VDWEENK---PQVLVLVPTRELAIQVKEDLMNIGRLKRVKATAVYGKASFDTQKSELKQK 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 + +++ TPGR+LDH +G + I+ LV+DEAD ML+MGF ++ I + +P RQTLL Sbjct: 124 SHIVVGTPGRVLDHLQKGTFKVEKIDCLVLDEADEMLNMGFADQVEAIINFLPAERQTLL 183 Query: 183 FSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSATM E+++++ ++ Q+ + I + T + I V Q KK L LL Sbjct: 184 FSATMPKEIERIASFYMKQDKQSIVIETTELSKPKIIQSSVK--VQEDKKEQQLLDLLTV 241 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ + +IFCN ++ V NL L K G + IHG + Q R ++ +F++G + +VA Sbjct: 242 ENA-DSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVA 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI +V HV NFDVP E+++HR GRTGRAG+ G A TLV ++ K + ++ Sbjct: 301 TDVAARGIDIENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNEVK 360 >gi|293605139|ref|ZP_06687530.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC 43553] gi|292816463|gb|EFF75553.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC 43553] Length = 462 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 220/383 (57%), Gaps = 10/383 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P ++ + G+ + TPIQ +++PL+L+ D+ A+TG+GKTA+F L +L Sbjct: 6 FSTLPLLPALLDNLQSLGFEQMTPIQAQSLPLILEGRDIIAQAKTGSGKTAAFGLGVLQK 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L+ R P+ L++ PTRELA QVA + + N+ + L GG P Q + L R Sbjct: 66 LDPARL---APQALLVCPTRELADQVAQELRRLARLIPNVKILTLCGGAPARPQAESLAR 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI DH RG L ++ + LV+DEADRM+DMGF I I S P RQTL Sbjct: 123 GAHLVVGTPGRIQDHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAKRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D ++K+S FL+NP ++V A IE F + + +LL Sbjct: 183 LFSATYPDNIRKLSARFLRNPAEVKVEA-QHDASRIEQIFYEI--DEKDRLDAVARLLAH 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + FCN K +L L+ G S A++G+++QR R +IL F + ++VA Sbjct: 240 FRPVST-LAFCNTKIRSHDLVERLQADGISAQALNGDLEQRERDEILIQFANQSCAVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI ++G V N DV E ++HRIGR+GR + G A +L + ++++ + +E Sbjct: 299 TDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLVE 358 Query: 362 KLIEKKVDWLNGDLSSLNPPLEK 384 + + W GD+ SL P ++ Sbjct: 359 QYQGTPLKW--GDIKSLKPKADR 379 >gi|260809351|ref|XP_002599469.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae] gi|229284748|gb|EEN55481.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae] Length = 623 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 210/373 (56%), Gaps = 15/373 (4%) Query: 12 VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65 V+ + +A + KPTPIQ + P+ LQ D+ GIAQTG+GKT +++LP + LE+ Sbjct: 121 VMEEIRNAQFEKPTPIQAQGWPVALQGRDIVGIAQTGSGKTLAYMLPAIVHINHQPYLER 180 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 G P L+L PTRELA QV K+G++ + + GG P Q + LERG +V Sbjct: 181 GDG----PICLVLTPTRELAQQVQQEASKFGRSSRIKNTCVFGGSPKGPQIRDLERGVEV 236 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 I TPGR++D GK M LV+DEADRMLDMGF P I+ I + RQTL++SA Sbjct: 237 CIATPGRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMYSA 296 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK---CALLQQLLQSQ 242 T E+++++E FL+ +I + +A V ++ K LL++++ + Sbjct: 297 TWPKEVRQLAEEFLKEYTQINIGALQLSANHNILQIVDVVQEHEKDHKLSRLLEEIMGEK 356 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + IIF K+ V +L + + G+ IHG+ Q R +L+ F+ G ++VA+ Sbjct: 357 EN--KTIIFVETKRRVDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNQFRSGKAPILVAT 414 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+A+RGLD+ D+ V NFD PN AE+Y+HRIGRT R+ R G A+T ++K + Sbjct: 415 DVASRGLDVSDIKFVINFDYPNSAEDYVHRIGRTARSDRTGTAYTFFTPSNLKQTKDLVS 474 Query: 363 LIEKKVDWLNGDL 375 ++++ +N L Sbjct: 475 VLQEAQQQVNPRL 487 >gi|158257008|dbj|BAF84477.1| unnamed protein product [Homo sapiens] Length = 1032 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|152996141|ref|YP_001340976.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp. MWYL1] gi|150837065|gb|ABR71041.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1] Length = 452 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 148/380 (38%), Positives = 227/380 (59%), Gaps = 20/380 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L +V+ ++ + G+ + IQ +T+P+ L +D+ G AQTGTGKTA+F++ M+ Sbjct: 71 MRFHDLNLPDRVIKSIAEMGFEYCSEIQAETLPMTLLGYDIIGQAQTGTGKTAAFLIAMI 130 Query: 61 T-----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + LE+ RA R LI+ PTRELA Q+AD K N +L V L+GG+ +E Q Sbjct: 131 SDFLDYPLEEKRAN-NFARGLIIAPTRELAIQIADEAVKLTSNCHLNVVTLVGGLSYEKQ 189 Query: 116 NKKLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 LE D+L+ TPGR+LD K+ + +E LV+DEADRML MGFIP +++I + Sbjct: 190 KIALETENVDILVATPGRLLDFARSRKVQLGKVECLVLDEADRMLSMGFIPDVKSIIRMT 249 Query: 175 PF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 P TRQT+LFSAT ++Q +++ + PK + V +T + I+ A +K Sbjct: 250 PHKETRQTMLFSATFPKDIQALAQQWTYFPKEVSVVPKEATNQNIDQVIYTVEA--DQKW 307 Query: 233 ALLQQLLQSQDTMKNG----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 +LQQL++ KNG IIF N++ +L L K + + G + Q R+K L Sbjct: 308 PVLQQLIE-----KNGGQRTIIFANRRDETRDLYERLRKANINCAILSGEVAQDKRVKTL 362 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 +NFKEG IQ++VA+D+A RG+ + +V V N+ +P E+Y+HRIGRTGR G GK+ + Sbjct: 363 ANFKEGIIQVLVATDVAGRGIHVDNVELVVNYSLPEDPEDYVHRIGRTGRGGETGKSVSF 422 Query: 349 VAKEDIKHIDAIEKLIEKKV 368 +++D I IE+++ + + Sbjct: 423 ASEDDAFMIPEIERVVGESI 442 >gi|88856781|ref|ZP_01131435.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] gi|88813949|gb|EAR23817.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] Length = 499 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/400 (35%), Positives = 225/400 (56%), Gaps = 15/400 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L + +V A+ G ++P PIQ +TIP+ L D+ G A+TGTGKT F LP+L Sbjct: 1 MTFSELNIDQDMVDALATKGILEPFPIQTQTIPMGLAGQDIIGQAKTGTGKTLGFGLPVL 60 Query: 61 TIL----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L E G + LI+ PTREL QVA++ N + +A + GG +E Q Sbjct: 61 QSLGINPEPGV------KALIVVPTRELCVQVAEDLVLAASNRSTKIAAIYGGKAYEGQV 114 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 ++++ GA V++ TPGR+LD ++ L + +I+++V+DEAD+MLD+GF+ I+ + + P Sbjct: 115 EQIKDGAQVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKMLDLGFLADIEKLFAQTPP 174 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCAL 234 TR T+LFSATM + ++ F+ P I P T + I+H V A K + Sbjct: 175 TRHTMLFSATMPGPIVALARRFMNKPIHIRATDPDEGLTQKNIKH--VVYRAHNLDKDEV 232 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + ++LQS+ K ++F K+ L L +GF+ A+HG+++Q R + ++ FK G Sbjct: 233 IARILQSEGRGKT-VVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAG 291 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +++A+D+AARG+D+ DV HV N +P+ + Y+HR GRTGRAG+ G A T V D+ Sbjct: 292 KKDILIATDVAARGIDVNDVTHVINHTIPDDHDTYLHRAGRTGRAGKTGVAVTFVDWADM 351 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR 394 I K ++ + SS ++DI + R Sbjct: 352 LKWTHINKALDMGIPEPTETYSSSPHLYSELDIPEGTKGR 391 >gi|298208330|ref|YP_003716509.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Croceibacter atlanticus HTCC2559] gi|83848251|gb|EAP86121.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Croceibacter atlanticus HTCC2559] Length = 623 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 210/349 (60%), Gaps = 8/349 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL 78 G+ +P+ +Q K IP++L++ D+ +AQTGTGKTA+F P++ ++ G + + LIL Sbjct: 2 GFTEPSEVQEKAIPILLEKDTDIVALAQTGTGKTAAFGFPLIQKIDAGYKKTQ---GLIL 58 Query: 79 EPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHF 137 PTREL Q+ + + Y K L + GG Q K+++RGA +++ TPGR+ D Sbjct: 59 SPTRELCLQITNELQNYSKYVKGLNPVAVYGGASITEQAKQIKRGAQIIVATPGRMQDMI 118 Query: 138 NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 RG + ++ I+ V+DEAD ML+MGF I I S P + T LFSATM E+ +++++ Sbjct: 119 RRGLVDISEIQYCVLDEADEMLNMGFYDDITEILSHSPEDKFTWLFSATMPKEVARIAKD 178 Query: 198 FLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKN 257 F+ NP I V + + E + H + + K L++L + + + +IFC K++ Sbjct: 179 FMNNPVEITVGSKNKGTENVSHEYYLVGGRDRYKA--LKRLCDANPEIFS-VIFCRTKRD 235 Query: 258 VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 + L + G+S AIHG++ Q R ++ +F+ IQ++VA+D+AARG+D+ D+ HV Sbjct: 236 TQKVAEQLIQDGYSAGAIHGDLSQNQRDLVMRSFRTRQIQMLVATDVAARGIDVDDITHV 295 Query: 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 ++ +P+ E Y HR GRTGRAG+ G + T+ K +++ I AIEK I++ Sbjct: 296 IHYTLPDEPEVYTHRSGRTGRAGKSGTSMTIATKSEMRKIKAIEKRIQR 344 >gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Pichia pastoris GS115] gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Pichia pastoris GS115] gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435] Length = 478 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 229/398 (57%), Gaps = 23/398 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F D GL P+++ A Y KPTPIQ ++IP L+ D+ G+AQTG+GKTA+F +P+L + Sbjct: 74 FNDFGLVPEILEACEKLKYTKPTPIQAESIPYALKGRDIIGLAQTGSGKTAAFAIPVLQS 133 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + E+ +L PTRELA Q+ + F+ G L ++GG+ Q K L R Sbjct: 134 LYEQATPFF----CCVLAPTRELAYQIKETFDSLGSGMGLRSVCIVGGMDMIDQAKDLMR 189 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR++DH K + ++ L++DEADR+LD+ F P I + L+P R T Sbjct: 190 KPHVIVATPGRLMDHLENTKGFSLKALKYLIMDEADRLLDLEFGPAIDKVLKLIPRERST 249 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT++++K+ L +P ++ V++ ST +++ + Y K L+ L + Sbjct: 250 YLFSATMTNKIEKLQRASLVDPIKVSVSSKYSTVDSLIQSLMVVPDGY-KNTFLIYLLNK 308 Query: 241 SQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 Q+ K+ IIF C + L ++ FS +HG ++Q R+ L+ FK Sbjct: 309 YQN--KSIIIFTRTCAHAQRTALLARLMD---FSAIPLHGQLNQSQRLGALNKFKARERT 363 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V NFD+P ++ YIHR+GRT RAGR G++ +LV + D++ I Sbjct: 364 ILVATDVAARGLDIPMVDVVINFDIPTDSKAYIHRVGRTARAGRSGRSISLVTQYDLELI 423 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARK 395 +E ++ K L D+ PP ++I ++ HN K Sbjct: 424 LRVESVLGMK---LPKDV----PPRDEI-LSLHNTVEK 453 >gi|62089534|gb|AAH92240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus] Length = 1027 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|156367199|ref|XP_001627306.1| predicted protein [Nematostella vectensis] gi|156214212|gb|EDO35206.1| predicted protein [Nematostella vectensis] Length = 669 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 153/392 (39%), Positives = 222/392 (56%), Gaps = 29/392 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D+ L ++ V AGY KPTP+Q IP+V + D+ AQTG+GKTA+F++P+L+ Sbjct: 194 FEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILSR 253 Query: 62 -----------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 I GR R + P L+L PTRELA Q+ D K+ ++ GG Sbjct: 254 IYMEGPPAPPDIKHAGRRR-QYPICLVLAPTRELAVQIFDEARKFSYRSLCRPCVVYGGA 312 Query: 111 PFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI 170 +Q ++L+R +L+ TPGR++D +RG++ +++I LV+DEADRMLDMGF P I+ I Sbjct: 313 DIGSQLRELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRI 372 Query: 171 TSL--VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 +P T RQTL+FSAT E+Q ++ +FL+N + V ST+E I V Sbjct: 373 VDQDSMPKTGIRQTLMFSATFPKEIQMLARDFLENYIFLAVGKVGSTSENITQKVVWV-D 431 Query: 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMK 286 ++ K+ LL LL + + ++F KK L L K G+ +IHG+ QR R + Sbjct: 432 EFDKRSFLLD-LLNASGPQQLTLVFVETKKGADALEMFLAKDGYYCTSIHGDRSQREREE 490 Query: 287 ILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346 L F+ G ++VA+ +AARGLDIP+V HV NFD+P E Y+HRIGRTGR G G A Sbjct: 491 ALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGRVGHTGLAT 550 Query: 347 TL-------VAKEDIKHIDAIEKLIEKKVDWL 371 + VAKE +D +E+ ++ WL Sbjct: 551 SFFNHKNKNVAKE---LMDILEESKQEIPSWL 579 >gi|253690374|ref|YP_003019564.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259585615|sp|C6DHF5|RHLB_PECCP RecName: Full=ATP-dependent RNA helicase rhlB gi|251756952|gb|ACT15028.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 430 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/417 (36%), Positives = 227/417 (54%), Gaps = 22/417 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + PR LI+ PTRELA Q+ + E L + L GG ++ Q K Sbjct: 71 LLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL F +G Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGN 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG+ G + +L +E Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV-------DWLNGDLSS----LNPPLEKIDIAQHNHARKNNPIPQ 401 ++ AIE I + D L DL + PP +HN+A + + P+ Sbjct: 367 NLPAIETYIGHSIPVSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNNAPRRSGAPR 423 >gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii C735 delta SOWgp] gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii C735 delta SOWgp] Length = 474 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 213/373 (57%), Gaps = 16/373 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ + A GY PT IQ ++IPL LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 50 FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL-- 107 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 +A + P++ L+L PTRELA Q++ FE G ++ A+++GG+ +Q L Sbjct: 108 ----QALMDKPQSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIAL 163 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+LDH K + +++ LV+DEADR+LD+ F P + I ++P R Sbjct: 164 GKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKER 223 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQ 236 +T LFSATM+ +++ + L NP R+ V N + + +++C + + L Sbjct: 224 RTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLL 283 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Q IIF L L GF +HG + Q +R+ L F+ + Sbjct: 284 NEFPGQSV----IIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSR 339 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLDIP V V N+D+P+ ++ YIHR+GRT RAG+ G+AF+LV + D++ Sbjct: 340 NILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEI 399 Query: 357 IDAIEKLIEKKVD 369 IE + K++D Sbjct: 400 WQRIEAALGKELD 412 >gi|227114353|ref|ZP_03828009.1| ATP-dependent RNA helicase RhlB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 429 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 150/412 (36%), Positives = 224/412 (54%), Gaps = 22/412 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + PR LI+ PTRELA Q+ + E L + L GG ++ Q K Sbjct: 71 LLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAA 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL F +G Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGN 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG+ G + +L +E Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV-------DWLNGDLSS----LNPPLEKIDIAQHNHARKN 396 ++ AIE I + D L DL + PP +HN R++ Sbjct: 367 NLPAIETYIGHGIPVSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNAPRRS 418 >gi|195115088|ref|XP_002002099.1| GI14145 [Drosophila mojavensis] gi|193912674|gb|EDW11541.1| GI14145 [Drosophila mojavensis] Length = 837 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 210/382 (54%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 +++ G P+++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ Sbjct: 411 WSESGFPPEIIEIIDSVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 470 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 ++ R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q Sbjct: 471 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQG 530 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P Sbjct: 531 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 590 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++++ ++L+ P + + + Sbjct: 591 TNLKPDTEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 650 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E V + K+ L+Q L S IIF NQKK L LEK G++ Sbjct: 651 KPTERTNQ-IVYMMGENDKRKKLMQIL--SAGIEPPVIIFVNQKKGADVLAKGLEKLGYN 707 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 C +HG Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y H Sbjct: 708 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTH 767 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG+ G A + V K+D Sbjct: 768 RIGRTGRAGKTGVAISFVTKDD 789 >gi|330831669|ref|YP_004394621.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565] gi|328806805|gb|AEB52004.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565] Length = 416 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/388 (37%), Positives = 229/388 (59%), Gaps = 17/388 (4%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL-- 63 +GL P+V+ + G+ TPIQ ++PL+++ HD+ G AQTGTGKT +F+ L Sbjct: 1 MGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNYLLT 60 Query: 64 ---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 K R V PR +I+ PTRELA Q+ ++ + + L + L GG ++ Q LE Sbjct: 61 HPLTKPRL-VNQPRAIIMAPTRELAVQIYNDADSIAASTGLKLGLAYGGEGYDKQLAVLE 119 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTR 178 +G D+LI T GRI+D+F + ++NI+++V+DEADRM D+GFI I+ + +P R Sbjct: 120 QGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPATER 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237 ++LFSAT++ +Q+++ + +P+ ++V T I E F Y K LL Sbjct: 180 LSMLFSATLSLRVQELAYEHMNHPEHVQVEPEQMTGVRIKEELF---YPSNEDKMLLLLS 236 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ + K I+F N K ++ LE G V + G++ Q+ RMKIL +F +G + Sbjct: 237 LMEEEWPEK-AIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGALD 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGL IPDV HVFN+D+P+ AE+Y+HRIGRTGRAG+ G + +L ++ ++ Sbjct: 296 ILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFNL 355 Query: 358 DAIEKLIEKKVDWLNGD----LSSLNPP 381 AIE+ I + D L + PP Sbjct: 356 PAIEEYIHHAIPVSKYDREALLDDVTPP 383 >gi|332234495|ref|XP_003266442.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Nomascus leucogenys] Length = 1031 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|297295088|ref|XP_002804561.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 2 [Macaca mulatta] gi|297295090|ref|XP_001109331.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 1 [Macaca mulatta] Length = 1032 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|221052953|ref|XP_002257851.1| RNA helicase [Plasmodium knowlesi strain H] gi|193807683|emb|CAQ38387.1| RNA helicase, putative [Plasmodium knowlesi strain H] Length = 546 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 134/376 (35%), Positives = 220/376 (58%), Gaps = 18/376 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL + +++ ++ + G+ KPT IQ K +P Q+ D+ G+++TG+GKTA F++P I Sbjct: 141 FRDLNICEEILQSIDELGWKKPTAIQRKMLPCAFQQRDIIGLSETGSGKTACFIIP---I 197 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L++ R + + L++ PTREL Q+A +F+ G N + + + GG+ Q+ L + Sbjct: 198 LQELRQKRQSFFALVISPTRELCIQIAQHFQALGSNLLVNICTIFGGVDIVTQSLNLAKK 257 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++++ TPGRILDH N K + N++ LV DEAD++L + F I + ++P R T Sbjct: 258 PNIIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPQKRTTF 317 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239 LFSATMT + K+ + L+NP +IEV+ STA T+ + F+ +Y+ C+L Sbjct: 318 LFSATMTKSVAKLKKASLKNPIKIEVSNKYSTASTLIENYIFIPLKYKYTYLCSLCFHF- 376 Query: 240 QSQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + + IIF C + + C +L G +HG + Q R+ L++FK Sbjct: 377 ----SSRCIIIFANTCATAQKINFFCRNL---GLKSICLHGKLTQNQRLSSLNSFKSKRY 429 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++++ + ARGLD+ D+ V NFD+ + E YIHR+GRT RAGR GK+ T V + D+++ Sbjct: 430 NILISTQVGARGLDLKDIKIVINFDLCSCKE-YIHRVGRTARAGRTGKSITFVTQYDVEN 488 Query: 357 IDAIEKLIEKKVDWLN 372 AIEK++ KK+D N Sbjct: 489 FLAIEKMLNKKIDKFN 504 >gi|145300503|ref|YP_001143344.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp. salmonicida A449] gi|142853275|gb|ABO91596.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp. salmonicida A449] Length = 407 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 210/368 (57%), Gaps = 4/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D L P + A+ + G+ +PT IQ + L D+ A TGTGKTA+FVLP L Sbjct: 5 FDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFVLPALQH 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + R LIL PTRELA QV + + + NL++ +IGG+ E Q L + Sbjct: 65 LLDFPRRKPGPCRMLILTPTRELALQVTAHAKALAVHTNLSIETIIGGVSHEEQLPALTK 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L++ ++ + ++IE+LV+DEADRMLDMGF+ + I + + + T+ Sbjct: 125 TTDIVVATPGRLLEYIDKEEFESHDIEVLVLDEADRMLDMGFVKDVNRIVAEARYRKHTM 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ L+K + L P + P S I +V + K ALL +L+ Sbjct: 185 LFSATLEGAGLEKFANEILNEPVELHAEPPRSERRPITQ-WVHLADDAAHKLALLIHILK 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +T K I+F ++ + L L+ G I G ++Q R++ + F G + +V Sbjct: 244 DPETQK-AIVFVRTRERLAELSGQLQAAGIPCAWIRGEMEQSKRVESIRKFHAGEVPFLV 302 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+P+V HV N+D+P + Y+HRIGRTGRAG G A +LV D+ + I Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGTDVYVHRIGRTGRAGNRGCAISLVEAHDMGMVAKI 362 Query: 361 EKLIEKKV 368 E+ E+++ Sbjct: 363 ERYTEERL 370 >gi|32363421|sp|Q9PA24|RHLB_XYLFA RecName: Full=ATP-dependent RNA helicase rhlB Length = 543 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 225/375 (60%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F+ L L P ++ + AG+ TPIQ T+P+ L D+ G AQTGTGKT +F++ ++ Sbjct: 9 LNFSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 68 Query: 61 TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L V PR LIL PTRELA Q+ ++ K+G N L AL+ GG+ ++ Q Sbjct: 69 NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +GADV+I TPGR++D+ + +++ + EI V+DEADRM D+GFI I+ I +P Sbjct: 129 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 188 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +RQTLLFSAT++ + +++ ++ P+++ T + T + + +K Sbjct: 189 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIY--FPAEEEKIP 246 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + M+ ++F N K V + +L++ G+ V + G++ QR R +L+ F++ Sbjct: 247 LLLGLLSRSEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 305 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 306 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 365 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 366 AMSLPDIEAYIEQKI 380 >gi|319648379|ref|ZP_08002595.1| DeaD protein [Bacillus sp. BT1B_CT2] gi|317389458|gb|EFV70269.1| DeaD protein [Bacillus sp. BT1B_CT2] Length = 481 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 211/362 (58%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS + A+ GY PT +Q + IP L++ DV ++TG+GKTA+F +P+ + Sbjct: 6 FKEYALSGDITKALDHLGYKHPTAVQSEVIPAALKKRDVVVKSRTGSGKTAAFGIPLCEL 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E + P+ LIL PTRELAAQV ++ G+ + A + G FE Q +L++ Sbjct: 66 TEWEENK---PQALILTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQK 122 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR+LDH +G + ++ LVIDEAD+ML+MGFI + I +P R T+L Sbjct: 123 CHIVVGTPGRVLDHIEKGTFPLEKLKYLVIDEADKMLNMGFIDQVGAIIRHLPEERLTML 182 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++++++S ++++P +IE+ +T IEH + + +LL L+ + Sbjct: 183 FSATFPEDVEQLSLQYMKDPLKIEMKAGGTTTADIEHQLI--IVDENDPFSLLVDLIIVE 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + I+FC ++ V L L G+ IHG + Q R +++ F+ G + ++A+ Sbjct: 241 NP-DSCIVFCRTQEQVNELQRRLAGLGYPCAKIHGGMPQEDRFAVMNRFRRGAFRYLIAT 299 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+DI ++ HV N+++P E+Y+HR GRTGRAG GKA TL + + I IE Sbjct: 300 DVAARGIDIENITHVINYELPLDQESYVHRTGRTGRAGSRGKAITLASPREKGMIADIED 359 Query: 363 LI 364 I Sbjct: 360 YI 361 >gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium dendrobatidis JAM81] Length = 483 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 211/375 (56%), Gaps = 19/375 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+ V+ V G+ PT IQ + P+ L DV G+A+TG+GKT ++ LP + Sbjct: 57 FAEASFPSYVLKEVESLGFSAPTSIQSQGWPMALSGRDVVGVAETGSGKTLAYTLPSIVH 116 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L+ G P LIL PTRELA Q+ K+G + + L GG+P Q Sbjct: 117 INAQPLLKPGDG----PIVLILAPTRELAIQIQVECNKFGSSSRIKNTCLYGGVPKGPQM 172 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + LERG ++ I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 173 RDLERGIEICIATPGRLIDMLESGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 232 Query: 177 TRQTLLFSATMTDELQKVSEN----FLQ-NPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQTL++SAT E+Q ++ + F+Q N +E++ + + +E C ++ + + Sbjct: 233 DRQTLMWSATWPKEVQALARDYQKEFIQVNVGSMELSASHNITQIVEIC--PSHDKRHRL 290 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL+ ++ + D + IIF K+ ++ L GF AIHG+ Q+ R ++ F Sbjct: 291 YKLLEDIMSNAD--QKTIIFTGTKRTADDITRDLRHDGFPALAIHGDKKQQERDWVMQEF 348 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K G +++A+D+AARGLD+ DV V NFD PN E+Y+HRIGRTGRA G A+TL + Sbjct: 349 KSGKTPILIATDVAARGLDVKDVKFVINFDFPNNIEDYVHRIGRTGRANNKGTAYTLFSP 408 Query: 352 EDIKHIDAIEKLIEK 366 ++ K + K++E+ Sbjct: 409 DNFKSARDLVKILEE 423 >gi|296192757|ref|XP_002744211.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Callithrix jacchus] Length = 1032 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|229490988|ref|ZP_04384821.1| dead/deah box helicase [Rhodococcus erythropolis SK121] gi|229322104|gb|EEN87892.1| dead/deah box helicase [Rhodococcus erythropolis SK121] Length = 385 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/343 (40%), Positives = 200/343 (58%), Gaps = 16/343 (4%) Query: 34 LVLQRHDVCGIAQTGTGKTASFVLPML---TILEKGRARVR-MPRTLILEPTRELAAQVA 89 + L D+ G A+TG GKT F +P+L E G A + PR LI+ PTREL QVA Sbjct: 1 MALAGDDLIGQARTGMGKTFGFGVPLLHRIVTAENGTAVLDGTPRALIIVPTRELCIQVA 60 Query: 90 DNFEKYGK-----NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144 + E K + L V + GG P+EAQ L++G DV++ TPGR+LD N+ L++ Sbjct: 61 RDLENASKYLRVGDRGLQVLPIYGGRPYEAQISALQKGVDVVVGTPGRLLDLANQSHLIL 120 Query: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204 + +LV+DEAD MLD+GF+P I+ + +VP RQT+LFSATM + ++ FL P Sbjct: 121 GKVGVLVLDEADEMLDLGFLPDIERLMGMVPDKRQTMLFSATMPGPIITLARTFLTQPTH 180 Query: 205 IEVNTPSSTA---ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL 261 I S+A T +H + A K ++ ++LQ++ +IF K+ + Sbjct: 181 IRAEEAESSAVHDRTSQHIY---RAHALDKAEMVARVLQAEGRGAT-MIFTRTKRTAQKV 236 Query: 262 CHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD 321 L ++GFSV A+HG++ Q +R K L F+ G + ++VA+D+AARG+DI DV HV N+ Sbjct: 237 ADDLAERGFSVGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDDVTHVINYQ 296 Query: 322 VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 P + Y+HRIGRTGRAGR G A TLV +DI I+K + Sbjct: 297 CPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLIDKAL 339 >gi|23336902|tpg|DAA00076.1| TPA_exp: Prp5-like DEAD-box protein [Homo sapiens] Length = 1032 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|283832032|ref|ZP_06351773.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220] gi|291071651|gb|EFE09760.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220] Length = 442 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 139/354 (39%), Positives = 210/354 (59%), Gaps = 6/354 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ + G+ +PT IQ IP L DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVA++ + KN +L VA + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHMEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + + +E L++DEADRMLDMGF I++I + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239 LFSAT+ D ++ +E L++P +EV+ ST E + H F K A+L LL Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSADPSTRERKKIHQFYYRADDIEHKTAMLIHLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + ++ I+F +++ V L L + G + C + G + Q R + + +G + ++ Sbjct: 244 KQPEATRS-IVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 VA+D+AARG+DIPDV HVFNFD+P + Y+HRIGRTGRAGR G A +LV D Sbjct: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHD 356 >gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810] gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810] Length = 407 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 211/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L ++ A+ + GY +PT IQ + IP L D+ A TGTGKTA+FVLP L Sbjct: 5 FAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA QVAD K L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARILILTPTRELAMQVADQARALAKKTKLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+ ++ + + IE LV+DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239 LFSAT+ + ++ + + L P I+ +P + I + A A++ K ALL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEH--KLALLKHII 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F ++ + L LE I G + Q R ++ F++GT+ ++ Sbjct: 243 TEQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A ++V D +D Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR 360 Query: 360 IEKLIEKKV 368 + + +++ + Sbjct: 361 VARYVKEDI 369 >gi|160420299|ref|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus musculus] Length = 1031 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|312371167|gb|EFR19420.1| hypothetical protein AND_22552 [Anopheles darlingi] Length = 1161 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/457 (33%), Positives = 248/457 (54%), Gaps = 36/457 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 +A G+S K + G+ KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 490 WAHCGVSRKEFEVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRH 549 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P +I+ PTREL Q+ + +K+ K+ NL + GG Q Sbjct: 550 ILDQPPLEDGDG----PIAIIMTPTRELCMQIGKDIKKFSKSLNLRTVCVYGGTGISEQI 605 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 606 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDN 665 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA--TYAQYSKK 231 + RQT++FSAT +++ ++ L+ P ++V S + +E V A++ K Sbjct: 666 IRPDRQTVMFSATFPRQMEALARRILKKPIEVQVGGRSVVCKEVEQHVVVLEDEAKFFKL 725 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL L Q Q ++ I+F ++++N L L K ++ ++HG IDQ R +++F Sbjct: 726 LELLG-LYQEQGSI---IVFVDKQENADILLKDLMKASYACMSLHGGIDQFDRDSTMNDF 781 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K+G ++L++A+ +AARGLD+ + V N+D PN E+Y+HR GRTGRAG G A+T + Sbjct: 782 KQGRVKLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTP 841 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-----------P 400 E ++ I + +E + DL L + AQ +K + Sbjct: 842 EQGRYAGDIIRALELSGGTVPEDLRQL---WDTYKSAQEAEGKKVHTGGGFSGKGFKFDA 898 Query: 401 QKSTGFDRRKKNYSSQKSHIPLKESEKISKLQQDIQE 437 Q++ + RKK QK+ + L++S+ L+QDI + Sbjct: 899 QEAAAVNERKK---MQKAALGLQDSDDEEDLEQDIDQ 932 >gi|285019640|ref|YP_003377351.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73] gi|283474858|emb|CBA17357.1| putative atp-dependent rna helicase protein [Xanthomonas albilineans] Length = 570 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/375 (36%), Positives = 222/375 (59%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ L P ++ + AG+ + TPIQ T+P+ L DV G AQTGTGKT +F++ ++ Sbjct: 9 LTFSAFDLQPALLAGLEGAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGKTLAFLVAVM 68 Query: 61 TILEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L A + PR LIL PTRELA Q+ + K+G + L AL+ GG+ ++ Q Sbjct: 69 NRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L++G DV+I TPGR++D+ + K++ ++ EI V+DEADRM D+GFI I+ + +P Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 TRQTLLFSAT++ + +++ + P+++ V T S TA + Y ++ Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRI---YFPADEEKL 245 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 L L S+ ++F N K V + +LE+ G+ V + G++ Q+ R +L+ F++ Sbjct: 246 TLLLGLLSRSEGARTMVFVNTKAFVERVARALERNGYRVGVLSGDVPQKKRETLLNRFQK 305 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++V +D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 306 GQLEILVVTDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 366 AMSLPDIEAYIEQKI 380 >gi|269138721|ref|YP_003295422.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|267984382|gb|ACY84211.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|304558724|gb|ADM41388.1| ATP-dependent RNA helicase DbpA [Edwardsiella tarda FL6-60] Length = 457 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/352 (39%), Positives = 206/352 (58%), Gaps = 8/352 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY TP+Q T+P +L DV A+TG+GKTA+F L +L ++ R + ++L+L Sbjct: 22 GYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDANRF---ITQSLVLC 78 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA K + N+ V L GG+PF AQ L V++ TPGR+LDH Sbjct: 79 PTRELADQVATALRKLARYMPNIKVLTLCGGVPFGAQRDSLIHAPHVIVATPGRLLDHLK 138 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 + + + ++ L++DEADRMLDMGF + + S P RQTLLFSAT E+ +S Sbjct: 139 KETVSLEALQTLILDEADRMLDMGFADALDEVISWAPEKRQTLLFSATWPAEIAAISRRI 198 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 ++P IE++T +E F K LLQ LL SQ + ++FCN KK+ Sbjct: 199 QRDPLTIEIDTHGEL-PAVEQRFYEV--SRGGKVGLLQTLL-SQYQPASCVVFCNTKKDC 254 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 + +LE SV A+HG+++QR R + L F G+ +++VA+D+AARGLDI + V Sbjct: 255 QAVYDALEGSEQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKALEMVI 314 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDW 370 N+++ E ++HRIGRT RAG G A +L A E+ + +A+E+++ ++ W Sbjct: 315 NYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLGARLQW 366 >gi|148709275|gb|EDL41221.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus] Length = 963 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 306 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 365 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 366 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 421 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 422 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 481 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 482 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 541 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 542 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 598 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 599 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 658 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 659 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 711 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 712 FDETEQALA-NERKKLQKAALGLQDSD 737 >gi|197119959|ref|YP_002140386.1| ATP-dependent RNA helicase [Geobacter bemidjiensis Bem] gi|197089319|gb|ACH40590.1| ATP-dependent RNA helicase [Geobacter bemidjiensis Bem] Length = 381 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 223/384 (58%), Gaps = 11/384 (2%) Query: 1 MDFADLGLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM 59 M FA LGL P+++ A+ + Y +P PIQ K IP VL+ DV IA+TG+GKTASF+LP+ Sbjct: 1 MSFASLGLHPELLSAIAEQPEYKRPYPIQSKVIPAVLKGRDVIAIARTGSGKTASFILPL 60 Query: 60 LTILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN--LTVALLIGGIPFEAQN 116 L ++ + R LIL PTRELAAQ+ + ++ G + + + GG+ Q Sbjct: 61 LQLIHCRDAGERRRLSALILVPTRELAAQIEEVAKQLGGHLKPRVKTGAVFGGVAINPQM 120 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 L +G ++LI TPGR+++ + + ++++ LV+DEADR+ F +Q I +L+P Sbjct: 121 ILL-KGIELLIATPGRLIELVAQNSVQLSSVATLVLDEADRLYAEDFQEELQQILALLPS 179 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQ LLFSAT E+++++ + L +P RIE+ ++ A+ I S+K LL+ Sbjct: 180 KRQNLLFSATFPPEVERLAASLLTDPMRIEIEATATEAQLITQQIY--LVDSSRKGPLLR 237 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++S D K ++F + +K N+ L G S H + Q R L+ FK G + Sbjct: 238 YLIKSGD-WKQVLVFASSQKRADNVTRKLVANGISASTFHSGMSQGGRTSALARFKSGEL 296 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++VA+DLA+RG+D+ + HV N+++P +Y HRIGRTGRA G A TL+ ED+ H Sbjct: 297 RVLVATDLASRGIDVQYLPHVVNYELPRSPIDYQHRIGRTGRAETAGVAVTLLCPEDLAH 356 Query: 357 IDAIEKLIEK---KVDWLNGDLSS 377 IEK + + ++D DLS+ Sbjct: 357 FKVIEKRLGQRLPRIDTAELDLSA 380 >gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi] gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi] Length = 518 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 218/369 (59%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGLS + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 57 LTWKDLGLSETLCKACDELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPIL 116 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 117 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLA 173 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH N + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 174 KKPHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 233 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T + ++ ++ +Y K L +L Sbjct: 234 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYLFIPVKY--KDVYLVHIL 291 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 292 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 350 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR G+A T+V++ DI+ Sbjct: 351 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIVSQYDIELYQR 410 Query: 360 IEKLIEKKV 368 IE+L+ K++ Sbjct: 411 IEQLLGKQL 419 >gi|41327773|ref|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo sapiens] gi|332821955|ref|XP_517939.3| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Pan troglodytes] gi|116241326|sp|Q7L014|DDX46_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName: Full=DEAD box protein 46; AltName: Full=PRP5 homolog gi|15126766|gb|AAH12304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapiens] gi|119582645|gb|EAW62241.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_d [Homo sapiens] Length = 1031 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|294893710|ref|XP_002774608.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] gi|239880001|gb|EER06424.1| RNA helicase, putative [Perkinsus marinus ATCC 50983] Length = 520 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/394 (36%), Positives = 216/394 (54%), Gaps = 21/394 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F G ++ + AG+V PTPIQI+ P+ + D+ GIA+TG+GKT +F+LP + Sbjct: 113 FEQAGFPDYILHELAQAGFVAPTPIQIQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIVH 172 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L++G P L++ PTRELA Q+ + K+GK+ + GG+P Q Sbjct: 173 INAQPYLQRGDG----PIVLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQA 228 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L G ++ I TPGR++D + + + LV+DEADRMLDMGF P I+ ITS + Sbjct: 229 RDLSEGVEICIATPGRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRP 288 Query: 177 TRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLL+SAT E+Q ++ + + P I V T + A +V +Y K+ L Sbjct: 289 DRQTLLWSATWPKEVQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLK 348 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + D K +IF + K+ +L +L G+ IHG+ Q R +L FK G Sbjct: 349 VLLERVMDGSKL-LIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGK 407 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +M+A+D+A+RGLD+ D+ HV N+D P + E+Y+HRIGRTGRAG G A+T + IK Sbjct: 408 SPIMIATDVASRGLDVKDIRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTPDKIK 467 Query: 356 HI-DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 D ++ L E +++P LE++ + Sbjct: 468 MARDLVQILREAN--------QTVSPELERLSLT 493 >gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri] Length = 801 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/362 (38%), Positives = 217/362 (59%), Gaps = 17/362 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + G+ + ++ A + KPTP+Q +IP+V+ D+ AQTG+GKTA+F+LP+LT Sbjct: 354 FEEAGIYDGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLTG 413 Query: 63 LEK----GRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 + K G A V+ P+ L++ PTRELA Q+ ++ K+ L +L GG Q Sbjct: 414 MMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTMLRPVVLYGGTSVGYQL 473 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV-- 174 K++E GA +++ TPGR++D N+GK+ + ++ L++DEADRMLDMGF P I+ I + Sbjct: 474 KQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKKIVHELGT 533 Query: 175 --PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKK 231 RQTL+FSAT +E+QK++ +FL + + V + ++ +H F Q +K Sbjct: 534 PEKTERQTLMFSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQKRQK 593 Query: 232 -CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 C +L S+ ++F QK+N L L + GF +IHG+ QR R + L + Sbjct: 594 LCDIL-----SESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRD 648 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 FK+G +++A+ +AARGLDIP+V HV N+D+P + Y+HRIGRTGR G GKA + + Sbjct: 649 FKQGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSFFS 708 Query: 351 KE 352 ++ Sbjct: 709 ED 710 >gi|149039843|gb|EDL93959.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus] Length = 940 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|91206539|sp|Q59LU0|DBP2_CANAL RecName: Full=ATP-dependent RNA helicase DBP2 Length = 562 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 201/360 (55%), Gaps = 11/360 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V D G+ KPTPIQ + P+ L D+ GIA TG+GKT S+ LP + Sbjct: 129 FDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVH 188 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L+ G P L+L PTRELA Q+ K+GK+ + + GG P Q Sbjct: 189 INAQPQLQYGDG----PIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQI 244 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG ++ I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 245 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 304 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL++SAT E+Q+++ ++L +P ++ + + A V ++SK+ L++ Sbjct: 305 DRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVK 364 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + N I +F + K+ + L G+ AIHG+ +Q R +L F++G Sbjct: 365 HLESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGK 424 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+AARG+D+ + HV N+D+P E+Y+HRIGRTGR G G A + + + K Sbjct: 425 TSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSK 484 >gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102] Length = 478 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 148/419 (35%), Positives = 235/419 (56%), Gaps = 14/419 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F LG+ + A Y PTPIQ K+IP+ LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 59 FKQLGIVDSLCEACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPILQA 118 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+K + L+L PTRELA Q+ +FE G + +L A+++GG+ Q L + Sbjct: 119 LLDKPQPLF----GLVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGK 174 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR++DH + K + ++ LV+DEADR+LDM F P I + +P R+T Sbjct: 175 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRT 234 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT++ +++ + L++P R+ V N + + +++ V Q K L+ Sbjct: 235 YLFSATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLV--IPQMRKDTYLI--Y 290 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ T K+ IIF + L GF +HG + Q +R+ L+ F+ GT + Sbjct: 291 LVNEFTGKSTIIFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDI 350 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V V N+D+P ++ YIHR+GRT RAG+ G A +LV + DI+ Sbjct: 351 LVATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEVFQ 410 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHAR-KNNPIPQKSTGFDRRKKNYSSQ 416 IE + KK+D + + +++ AQ HAR + + +K G +R K S + Sbjct: 411 RIEAALGKKLDIYPTEKEEVLAFQHRVEEAQ-RHARIEMKNLSEKRHGKGKRAKGTSKR 468 >gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Ciona intestinalis] Length = 718 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 153/432 (35%), Positives = 227/432 (52%), Gaps = 27/432 (6%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F + +S ++ A+ + YV PTPIQ IP+ L D+C A TGTGKTA+F+LP+L Sbjct: 171 LGFQQMNISRPLLKAISEINYVTPTPIQQAAIPIGLLGRDICACAATGTGKTAAFMLPVL 230 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L L PTRELA QV ++ NL + L GG+ ++Q L Sbjct: 231 ERLLYRTQSTPITRVLCLVPTRELAVQVYSVTHHLAQHSNLRICLAAGGLDMKSQEAALR 290 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D++I TPGR++DH N + +EIL++DEADRMLD F + I L RQ Sbjct: 291 QGPDIVIATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFEDQMNEIIKLCSHHRQ 350 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATM++++Q+++ L+NP +I VN+ + A + F+ + L Sbjct: 351 TMLFSATMSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIRETREGDREAIVAAL 410 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S+ + N ++F KK + L G +HGN+ Q R++ L FK G I ++ Sbjct: 411 CSRSFISNVLVFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQGQRLESLKRFKNGDIDIL 470 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 V +DLAARGLDI +V V N +PN ++Y+HR+GRT RAG+ G++ +LV + + K + Sbjct: 471 VCTDLAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGKSGRSVSLVGETERKLLKE 530 Query: 360 IEK--------------LIEKKVDWLN------GDLSSLNPPLEKIDIAQHNHARKNNPI 399 I K +I K D LN GD+ + EK IA N +K I Sbjct: 531 IVKFAKNPVKSRVVPPDVISKFRDKLNEIESEVGDVMKMEAQ-EKQVIASENQVKKAEKI 589 Query: 400 -----PQKSTGF 406 P+K F Sbjct: 590 IKGEAPEKRAWF 601 >gi|15839285|ref|NP_299973.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa 9a5c] gi|9107937|gb|AAF85493.1|AE004075_8 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c] Length = 544 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 225/375 (60%), Gaps = 10/375 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 ++F+ L L P ++ + AG+ TPIQ T+P+ L D+ G AQTGTGKT +F++ ++ Sbjct: 10 LNFSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVV 69 Query: 61 TILEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L V PR LIL PTRELA Q+ ++ K+G N L AL+ GG+ ++ Q Sbjct: 70 NRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQR 129 Query: 117 KKLERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L +GADV+I TPGR++D+ + +++ + EI V+DEADRM D+GFI I+ I +P Sbjct: 130 EMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLP 189 Query: 176 --FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 +RQTLLFSAT++ + +++ ++ P+++ T + T + + +K Sbjct: 190 ERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIY--FPAEEEKIP 247 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL LL + M+ ++F N K V + +L++ G+ V + G++ QR R +L+ F++ Sbjct: 248 LLLGLLSRSEGMRT-MVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK 306 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++++VA+D+AARGL I V +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 307 GQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERY 366 Query: 354 IKHIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 367 AMSLPDIEAYIEQKI 381 >gi|51473847|ref|YP_067604.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington] gi|51460159|gb|AAU04122.1| probable ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington] Length = 407 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 214/364 (58%), Gaps = 13/364 (3%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 + LS +++ A+ +PT IQ ++IP+ + D+ +QTG+GKT +++LP++ Sbjct: 3 NFNLSEELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLIDAFI 62 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 K + LIL PTRELA Q+ K Y + A+LIGG P Q +L++ Sbjct: 63 KNKTTA-----LILVPTRELATQIHSTLNKVTIAYKINSAVLIGGEPMFKQFMQLKKNPK 117 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 V+I TPGRI++H NR L + +I I+V+DE DRMLDMG +++I +P RQ L+FS Sbjct: 118 VIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEDINKFLPEKRQVLMFS 177 Query: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLLQSQ 242 ATM + VS+ +L NP RI V + A I E V+ ++S+ L +QL Sbjct: 178 ATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSE---LTKQL---G 231 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + + IIF K++ L L+ + AIHG++ Q R +++ +F++ ++MVA+ Sbjct: 232 NRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRARVILSFRKLNHRIMVAT 291 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLDIP HV N+D+P E+Y+HRIGRTGRAG G A + ++ +D+ AI++ Sbjct: 292 DVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAIDR 351 Query: 363 LIEK 366 L+ K Sbjct: 352 LVNK 355 >gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi] Length = 744 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/388 (36%), Positives = 218/388 (56%), Gaps = 11/388 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF D GL ++ + G+ KPT IQ + +P+ L D+ GIAQTG+GKT ++V+P L Sbjct: 118 MDFEDGGLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVVPSL 177 Query: 61 TILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 ++ + R P LIL PTRELA Q+ +G + + GG P Q + Sbjct: 178 VHIQHQESIRRGDGPIALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRD 237 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LERGA+++I TPGR++D RG + LV+DEADRMLDMGF P I+ I + R Sbjct: 238 LERGAEIVIATPGRLIDFLERGITNLKRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDR 297 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCA 233 Q L++SAT E+++++E FL + +I + + + +A + ++ C Y + K Sbjct: 298 QVLMWSATWPKEVRQLAEEFLADYIQINIGSLNLSANHNILQIVDVC--EDYEKDQKLMK 355 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL ++ DT IIF K+ V ++ + + G+ AIHG+ Q+ R +LS F+ Sbjct: 356 LLTEISAEPDTKT--IIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSAFRN 413 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G ++VA+D+AARGLD+ DV V N+D P+ +E+Y+HRIGRTGR+ G A+TL + Sbjct: 414 GRQGILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 473 Query: 354 IKHIDAIEKLIEKKVDWLNGDLSSLNPP 381 + + ++ + +N L L P Sbjct: 474 ANKANDLINVLREANQVINPRLVELAKP 501 >gi|294675271|ref|YP_003575887.1| DEAD/DEAH box helicase [Prevotella ruminicola 23] gi|294472504|gb|ADE81893.1| ATP-dependent RNA helicase, DEAD box family [Prevotella ruminicola 23] Length = 600 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 220/367 (59%), Gaps = 8/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLT 61 F +LG+ ++ A+ + G+V P P+Q IP +L +DV +AQTGTGKTA+F +P+L Sbjct: 4 FEELGVCEQIRKAIEELGFVHPMPVQEAVIPYLLGNENDVIALAQTGTGKTAAFGIPLLE 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 ++ + R + L+L PTREL Q+AD+ + K + + V + GG E Q + L+ Sbjct: 64 RIDTTQ---RYTQALVLSPTRELCLQIADDLRDFAKYMDGVHVEAVYGGAAIEPQMRALK 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G ++++ TPGR++D +RG + + +V+DEAD ML+MGF I I + T Sbjct: 121 KGVEIIVATPGRLVDLMHRGIARLEQVTNIVLDEADEMLNMGFSDSINEIFESLSADHHT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L+FSATM+ E+++V++ +L + K I V + + AE++ H + A+ K L++++ Sbjct: 181 LMFSATMSKEVERVAKKYLHDYKEIVVGSRNEGAESVNHIYYMVNAK--DKYLALKRIVD 238 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + IIFC K + L K G++ ++HG+++Q+ R + + F+ QL+V Sbjct: 239 FYPRI-FAIIFCRTKVETQEVADKLIKDGYNAESLHGDLNQQQRDQTMQKFRNHLTQLLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ D+ HV NF +P+ E+Y HR GRTGRAG+ G + ++V + I I Sbjct: 298 ATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIVHSREKFKIRNI 357 Query: 361 EKLIEKK 367 EK+I K+ Sbjct: 358 EKIIGKE 364 >gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2] gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1] gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2] gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1] gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1] gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1] gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3] gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1] gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1] gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1] gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1] gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1] gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2] gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1] gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2] gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1] gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1] Length = 564 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 55 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114 Query: 63 L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QV+ + V + GG+ +E+Q Sbjct: 115 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 174 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ P Sbjct: 175 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 234 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232 +RQT+LFSATM + ++ + L+ P + +T ++ +T + + A K Sbjct: 235 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 291 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ ++LQ+ D K IIFC K+ L L+ +GF AIHG++ Q +R K L F+ Sbjct: 292 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 350 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV Sbjct: 351 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 410 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 D+ KLI K LN +LS P+E + H Sbjct: 411 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 438 >gi|85540944|sp|Q569Z5|DDX46_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName: Full=DEAD box protein 46 Length = 1032 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|20806137|ref|NP_620798.1| probable ATP-dependent RNA helicase DDX46 [Rattus norvegicus] gi|81890303|sp|Q62780|DDX46_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName: Full=DEAD box protein 46; AltName: Full=Helicase of 117.4 kDa gi|897915|gb|AAC52210.1| RNA helicase [Rattus norvegicus] gi|78174325|gb|AAI07591.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus] Length = 1032 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|124249330|ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus] gi|74140985|dbj|BAE22077.1| unnamed protein product [Mus musculus] gi|74210620|dbj|BAE23664.1| unnamed protein product [Mus musculus] gi|123240386|emb|CAM17306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Mus musculus] gi|148674548|gb|EDL06495.1| mCG14602, isoform CRA_c [Mus musculus] Length = 760 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 214/364 (58%), Gaps = 3/364 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 184 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + ++T L +GG+ ++Q L Sbjct: 244 ERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 304 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 363 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + + A++ L Sbjct: 364 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 423 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L T + ++F KK + L G V +HGN+ Q R++ L FK+ I + Sbjct: 424 LMRTFT-DHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDI 482 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 483 LVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 542 Query: 359 AIEK 362 I K Sbjct: 543 EIVK 546 >gi|168751737|ref|ZP_02776759.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4113] gi|168753673|ref|ZP_02778680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4401] gi|168768057|ref|ZP_02793064.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4486] gi|168775673|ref|ZP_02800680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4196] gi|168780675|ref|ZP_02805682.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4076] gi|168786614|ref|ZP_02811621.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC869] gi|168800996|ref|ZP_02826003.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC508] gi|195938068|ref|ZP_03083450.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4024] gi|208809105|ref|ZP_03251442.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4206] gi|208812626|ref|ZP_03253955.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4045] gi|208819057|ref|ZP_03259377.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4042] gi|209397506|ref|YP_002273298.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4115] gi|254795778|ref|YP_003080615.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. TW14359] gi|261225554|ref|ZP_05939835.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000] gi|261255600|ref|ZP_05948133.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK966] gi|291285195|ref|YP_003502013.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str. CB9615] gi|226739531|sp|B5YY28|RHLB_ECO5E RecName: Full=ATP-dependent RNA helicase rhlB gi|187768819|gb|EDU32663.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4196] gi|188014285|gb|EDU52407.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4113] gi|189001565|gb|EDU70551.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4076] gi|189359231|gb|EDU77650.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4401] gi|189362707|gb|EDU81126.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4486] gi|189373308|gb|EDU91724.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC869] gi|189376769|gb|EDU95185.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC508] gi|208728906|gb|EDZ78507.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4206] gi|208733903|gb|EDZ82590.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4045] gi|208739180|gb|EDZ86862.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4042] gi|209158906|gb|ACI36339.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4115] gi|209753518|gb|ACI75066.1| thioredoxin 1 [Escherichia coli] gi|209753520|gb|ACI75067.1| thioredoxin 1 [Escherichia coli] gi|209753522|gb|ACI75068.1| thioredoxin 1 [Escherichia coli] gi|209753524|gb|ACI75069.1| thioredoxin 1 [Escherichia coli] gi|209753526|gb|ACI75070.1| thioredoxin 1 [Escherichia coli] gi|254595178|gb|ACT74539.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359] gi|290765068|gb|ADD59029.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str. CB9615] gi|320191126|gb|EFW65776.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC1212] gi|320639264|gb|EFX08886.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. G5101] gi|320644649|gb|EFX13699.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str. 493-89] gi|320649974|gb|EFX18477.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str. H 2687] gi|320655320|gb|EFX23262.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660945|gb|EFX28388.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str. USDA 5905] gi|320666069|gb|EFX33083.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. LSU-61] gi|326344238|gb|EGD67998.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. 1125] Length = 421 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHC 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|145611832|ref|XP_001411591.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15] gi|152060562|sp|A4RGD1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3 gi|145019073|gb|EDK03352.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15] Length = 538 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/429 (35%), Positives = 241/429 (56%), Gaps = 22/429 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + A + KPTPIQ + IPL LQ DV GIA+TG+GKTA+F LP+L + Sbjct: 112 FRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQS 171 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +LEK + L+L PTRELAAQ+ FE G + +L A+++GG+ +Q+ L + Sbjct: 172 LLEKPQPLF----GLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGK 227 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR+LDH + K + +++ LV+DEADR+LD+ F P + I +P R+T Sbjct: 228 KPHIVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRT 287 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM+ +++ + L++P ++ V+ SS +T+ K + L Sbjct: 288 FLFSATMSSKVESLQRASLRDPLKVSVS--SSQEKTVSTLIQNPLFIPHKHKDVYLIYLA 345 Query: 241 SQDTMKNGIIF---CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ K I+F N+ + V L +L F +HG + Q R+ L+ FK + Sbjct: 346 NEFAGKTTIVFTRTVNEAQRVSILLRTL---SFGAIPLHGQLSQSMRLGALNKFKARSRD 402 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP+V V NFD+P + YIHR+GRT RAGR G+A +++ + D++ Sbjct: 403 ILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELW 462 Query: 358 DAIEK--LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTG-----FDRRK 410 IEK L +K+ D + E+++ AQ HAR+ + G RK Sbjct: 463 LRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQR-HAREEMKALHEDRGKKGAVLKGRK 521 Query: 411 KNYSSQKSH 419 + ++++ H Sbjct: 522 RGSATKRRH 530 >gi|119582644|gb|EAW62240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_c [Homo sapiens] Length = 1032 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|117617930|ref|YP_855071.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559337|gb|ABK36285.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 458 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/450 (33%), Positives = 241/450 (53%), Gaps = 27/450 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ L LSP + + GY++ TPIQ +++PLVL D+ A+TG+GKTA+F L +L Sbjct: 4 EFSSLNLSPALQDNLASLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLA 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ R V+ L+L PTRELA QVA + + N+ + L GG P Q+ L Sbjct: 64 NLDVNRLEVQ---ALVLCPTRELADQVATEIRRLARTLPNVKLVTLCGGTPTAPQSATLS 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA + + TPGRIL H +G L ++ ++ LV+DEADRMLDMGF I + S P RQT Sbjct: 121 FGAHIAVGTPGRILKHLEQGTLELDGLKTLVLDEADRMLDMGFGEDINRVISHAPRDRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + + ++S +NP + V + + + + Q L Q Sbjct: 181 LLFSATYPEGIAQMSRGVQRNPVEVSVESLHEDSAIEQKLYEVPAGQRLDALGWLLSHYQ 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++FCN K+ ++ L +GFS A++G+++QR R ++L F G+ ++V Sbjct: 241 PSSC----VVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILV 296 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++G V N+++ E ++HRIGRTGRAG+ G A +L + + ++ I Sbjct: 297 ATDVAARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNFI 356 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE---------KIDIAQHNHARKNNPIPQKS-----TGF 406 E+ + + GDL+ + ++ ID + + R + + + G Sbjct: 357 EEYQQAPIP--QGDLAGIGRDIKPIAPQMVTLSIDAGRKSKVRAGDILGALTGEGGIAGA 414 Query: 407 DRRKKNYSSQKSHIPLKE---SEKISKLQQ 433 D K S Q S++ +K S + +LQ+ Sbjct: 415 DVGKIQISEQYSYVAVKRQVASAALKRLQE 444 >gi|53713588|ref|YP_099580.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46] gi|60681868|ref|YP_212012.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343] gi|253565577|ref|ZP_04843032.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5] gi|265763909|ref|ZP_06092477.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16] gi|52216453|dbj|BAD49046.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46] gi|60493302|emb|CAH08086.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343] gi|251945856|gb|EES86263.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5] gi|263256517|gb|EEZ27863.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16] gi|301163360|emb|CBW22910.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R] Length = 418 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 218/371 (58%), Gaps = 7/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F++L L+ V+ A+ + + TPIQ + IP++L+ D+ +AQTGTGKTA+F+LP+L Sbjct: 1 MKFSELQLNDNVLEALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGG---IPFEAQNK 117 L +G +I+ PTRELA Q+ E + ++ + GG I FE Q K Sbjct: 61 NKLSEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKK 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L GADV+I TPGR++ H + G + ++ + ++DEADRMLDMGF I I +P Sbjct: 121 GLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKYLPKE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSATM ++Q+++ L NP +++ + ++ E A Y Y + + + Sbjct: 181 RQTIMFSATMPAKIQQLANTILNNPAEVKL----AVSKPAEKIVQAAYVCYENQKLGIVR 236 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L +++ + IIF + K V + +L+ +V +H +++Q R I+ FK G I Sbjct: 237 SLFAEEVPERVIIFASSKIKVKEVAKALKMMKLNVGEMHSDLEQVQREFIMHEFKSGRIN 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+ +RG+DI D+ V NFDVP+ +E+Y+HRIGRT RA G A T V +++ + Sbjct: 297 ILVATDIVSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356 Query: 358 DAIEKLIEKKV 368 IE +EK++ Sbjct: 357 KNIENFLEKEI 367 >gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1] Length = 564 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/436 (34%), Positives = 238/436 (54%), Gaps = 33/436 (7%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 55 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114 Query: 63 L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QV+ + V + GG+ +E+Q Sbjct: 115 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYESQ 174 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ P Sbjct: 175 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 234 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232 +RQT+LFSATM + ++ + L+ P + +T ++ +T + + A K Sbjct: 235 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 291 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ ++LQ+ D K IIFC K+ L L+ +GF AIHG++ Q +R K L F+ Sbjct: 292 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 350 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV Sbjct: 351 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 410 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP---------IPQKS 403 D+ KLI K LN +LS P+E + H + + P + + + Sbjct: 411 DVTRW----KLINKA---LNLELSE---PVETYSTSPHLYTDLDIPEDAQGQIVDLEKAA 460 Query: 404 TGFDRRKKNYSSQKSH 419 T RR+ + SH Sbjct: 461 TEKKRRQHRHGHDGSH 476 >gi|224370329|ref|YP_002604493.1| predicted ATP-dependent RNA helicase [Desulfobacterium autotrophicum HRM2] gi|223693046|gb|ACN16329.1| predicted ATP-dependent RNA helicase [Desulfobacterium autotrophicum HRM2] Length = 411 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 131/375 (34%), Positives = 221/375 (58%), Gaps = 6/375 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +S + + G+V+PT IQ K IP +L+ DV IAQTGTGKTA+F +P++ Sbjct: 1 MKFEKYHISEDLKKNLAALGFVRPTDIQFKAIPSILKGEDVLAIAQTGTGKTAAFAIPVI 60 Query: 61 TILE--KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + K R R R L++ PTRELA Q+ F+ ++ + L GG+ + Q K+ Sbjct: 61 DRIHSYKTSKRTRGIRCLVMVPTRELAEQIGGVFDTLSRHTKVKTFALYGGVEQDRQIKR 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+ G D+LI TPGR+ D ++G + ++N+ LV+DEAD MLD+GFI I ++ + Sbjct: 121 LQDGIDILIATPGRMFDLISQGHINLDNVNTLVLDEADHMLDLGFITDIHHVKQKLVKRH 180 Query: 179 QTLLFSATMTDELQKVSENFLQNPK-RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTL FSAT+ +++K++ + ++ RI+++ ++ + H FV + + K L+ Sbjct: 181 QTLFFSATINQKIKKLAFSQVKTTAIRIQISPDDPVSKNVSH-FVM-FVEMDDKRFFLEN 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 ++ + K I+F + + ++E+ G IHG DQ R ++ FK I Sbjct: 239 FIKENPSAKI-IVFVRTRVRAERVAKAMERVGIETSTIHGEKDQTLRSLVMQRFKNNEIS 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D++ARG+DIP+V V N+D+P++AENY+HR+GRTGR + G A + ++ + + + Sbjct: 298 ILIATDVSARGIDIPNVDFVINYDLPDQAENYVHRVGRTGRGVKKGSAISYCSRNERERL 357 Query: 358 DAIEKLIEKKVDWLN 372 D I+ I KKV+ ++ Sbjct: 358 DEIQTFINKKVEVVH 372 >gi|312883442|ref|ZP_07743168.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC BAA-2122] gi|309369058|gb|EFP96584.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC BAA-2122] Length = 458 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 211/364 (57%), Gaps = 7/364 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L L+ ++ + G+ + T IQ + +P +L+ DV G +TG+GKT +F L +L Sbjct: 5 FNTLNLASDLLVTLDSLGFSQMTAIQQQALPAILEGKDVIGQGKTGSGKTVTFSLGILNN 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L R R++ TL+L PTRELA QVA + +N+ V L GG+P Q LE Sbjct: 65 LNVERFRIQ---TLVLCPTRELADQVAKEIRTLARGRHNVKVLTLCGGMPMGPQIGSLEH 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRILDH ++G++ ++I V+DEADRMLDMGF I + S +P RQTL Sbjct: 122 GAHIIVGTPGRILDHMSKGRIQFSDINTFVLDEADRMLDMGFEDAIDTLVSELPINRQTL 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++ ++E + I+ T TI+ F +K AL LL Sbjct: 182 LFSATYPKHIEVLAEKVTSEAQMIKTQTHDEKT-TIKQFFYEVDGTEAKDDALETLLLHY 240 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++ ++FCN KK V ++ L++ GF+V +HG+++QR R + L F + ++VA Sbjct: 241 KP--ESSVVFCNTKKEVQDVSDELDRLGFNVAELHGDMEQRERERALITFANKSTSILVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLD+ ++ VFNF++ E ++HRIGRTGRAG G AF+ + + IE Sbjct: 299 TDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGAEGLAFSFFTARESYRVARIE 358 Query: 362 KLIE 365 + ++ Sbjct: 359 EYMD 362 >gi|292493687|ref|YP_003529126.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4] gi|291582282|gb|ADE16739.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus Nc4] Length = 423 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/424 (34%), Positives = 236/424 (55%), Gaps = 13/424 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F L L+ ++ + DAG+ TPIQ T+PL+L DV G AQTGTGKTA+F+L + Sbjct: 9 ISFDALNLAKPLIQGIQDAGFTVCTPIQALTLPLLLAGKDVAGQAQTGTGKTAAFLLATM 68 Query: 61 TILEK--GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + G + + PR LIL PTRELA Q+ + + G++ L ++ GG + Q Sbjct: 69 QYLLRDLGIEQGQQPRALILAPTRELAIQIKKDAQLLGRHTGLRSVVVYGGANYRKQRHL 128 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--F 176 LE+G D+LI TPGR++D++ + ++++V+DEADRM D+GFI I+ I +P Sbjct: 129 LEQGCDILIGTPGRLIDYYKQQIFDFKKVQVVVLDEADRMFDLGFIRDIRYILRRLPPPH 188 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R +LFSAT++ + +++ + NP+ ++ + TA+ I+ Y +++ L Sbjct: 189 KRLGMLFSATLSLRVTELAYEHMNNPRLVQTESQKVTADKIKE---RVYFPANEEKIPLL 245 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L + ++ I+F N K + LE GF + G++ Q R ++L F+EG+ Sbjct: 246 LALLKRLAPQHAIVFVNTKYAAEQVWGYLEGNGFKAALLSGDVPQGKRQRLLKEFQEGSY 305 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P E+Y+HRIGRT RAG G A + ++ Sbjct: 306 PILVATDVAARGLHIPTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAVSFACEDYAFS 365 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416 + IE+ I K+ + D +L+ P + I + R N + + G R+K S+ Sbjct: 366 LPDIEEYIGHKLAPFSVDDEALSIPKQPISLP----PRDNRNL--RKGGHRSRQKKKDSR 419 Query: 417 KSHI 420 K + Sbjct: 420 KGGV 423 >gi|115770281|ref|XP_783077.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Strongylocentrotus purpuratus] Length = 660 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 211/363 (58%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F ++ LS ++ A+ + +PTPIQ TIP+ L D+C A TGTGKTA+F+LP++ Sbjct: 79 MAFTEMNLSRPILRAISGLNFTEPTPIQSATIPVALLGKDICACAATGTGKTAAFMLPVV 138 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L++ PTREL Q+ + + + N+ L +GG+ + Q L Sbjct: 139 ERLLYKPKQAPVTRVLVVTPTRELGVQIFNVSRQLCEFTNIECCLAVGGLDIKLQEAALR 198 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +G D++I TPGR++DH N ++++E+L++DEADRMLD F ++ I + RQ Sbjct: 199 KGPDIVIATPGRLIDHLHNAPTFSLSSVEVLILDEADRMLDEFFEEQMKEIIKMCSVARQ 258 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTD+++ ++ L+NP RI VN + A ++ F+ + L Sbjct: 259 TMLFSATMTDQVKDLALVSLKNPVRIFVNENTDVAYNLQQEFIRIRDNREGDREAIVSAL 318 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK L L G V +HG++ Q RM++L FKE I ++ Sbjct: 319 CCRNFHDHCMVFVQTKKQAHRLHVILGLLGIKVGELHGDLSQTKRMEMLRMFKEDLIDIL 378 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+DLAARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +L +++ + + Sbjct: 379 VATDLAARGLDIEGVKTVINFTMPNSEKHYVHRVGRTARAGRSGRSVSLAGEKERRMLKE 438 Query: 360 IEK 362 + K Sbjct: 439 LVK 441 >gi|206578204|ref|YP_002241152.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae 342] gi|288937791|ref|YP_003441850.1| DEAD/DEAH box helicase [Klebsiella variicola At-22] gi|290513187|ref|ZP_06552549.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. 1_1_55] gi|226739540|sp|B5XYY9|RHLB_KLEP3 RecName: Full=ATP-dependent RNA helicase rhlB gi|206567262|gb|ACI09038.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae 342] gi|288892500|gb|ADC60818.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22] gi|289774398|gb|EFD82404.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. 1_1_55] Length = 421 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P V+ A+ G+ TPIQ +PL L+ DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAT 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLLE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|161505568|ref|YP_001572680.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189040035|sp|A9MJ29|RHLB_SALAR RecName: Full=ATP-dependent RNA helicase rhlB gi|160866915|gb|ABX23538.1| hypothetical protein SARI_03738 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 421 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+VV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQVTGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAA 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIESYIGHSI 379 >gi|15422163|gb|AAK95821.1| RNA helicase-like protein [Homo sapiens] Length = 796 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 208/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y HR+GRT RAGR G++ +LV +++ K + Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKE 577 Query: 360 IEK 362 I K Sbjct: 578 IVK 580 >gi|291615697|ref|YP_003518439.1| RhlB [Pantoea ananatis LMG 20103] gi|291150727|gb|ADD75311.1| RhlB [Pantoea ananatis LMG 20103] gi|327395962|dbj|BAK13384.1| ATP-dependent RNA helicase RhlB [Pantoea ananatis AJ13355] Length = 430 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 148/391 (37%), Positives = 222/391 (56%), Gaps = 17/391 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P VV A+ G+ TPIQ +P L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPLVVEALDKKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +GR +V PR LIL PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAPEGR-QVNQPRALILAPTRELAVQIHADAEPLAASTGLKLGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE G D+L+ T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLENGVDILVGTTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPAA 189 Query: 178 RQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q ++LFSAT++ +++++ + + + +EV T I E F Y +K L Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ L++ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 247 LQTLVE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 306 DIDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYA 365 Query: 355 KHIDAIEKLIEKK--VDWLNGD--LSSLNPP 381 ++ IE+ I V N D L+ L PP Sbjct: 366 LNLPGIEEYIGHSIPVSKYNSDALLTELPPP 396 >gi|262273976|ref|ZP_06051788.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886] gi|262221786|gb|EEY73099.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886] Length = 441 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/422 (33%), Positives = 233/422 (55%), Gaps = 11/422 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL +++ + G+ PT +Q IP+V D+ ++TG+GKT +F+LP L Sbjct: 1 MQFEDLGLDKRLLKTMELWGFDTPTDVQASAIPVVCAGKDLLASSKTGSGKTLAFLLPAL 60 Query: 61 TILEKGRARVRM-PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + + +A R PR ++L PTREL QV K L++GG F Q K+ Sbjct: 61 QRVMRSKAFSRSGPRVVVLAPTRELVKQVYGELRKLLAGTQFKGMLILGGENFNDQAKEF 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 + ++ TPGR+ DH L + +E+L++DEADRMLD+GF P ++ I S R Sbjct: 121 RKNPAFIVATPGRLADHLEHRHLSLEGLELLILDEADRMLDLGFAPQLKAINSAANHRRR 180 Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTL+FSAT+ ++ +++ + L++PKR+ + + + IE F K ALL + Sbjct: 181 QTLMFSATLDHQQVNEIAADMLKDPKRVAIGFVNEEHKDIEQRFFLC-DHLDHKQALLDR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ Q++ + +IF + + L ++G A+ G++ Q +R +I++ F+ G + Sbjct: 240 VME-QESYQQVMIFTATRADTDRLATWFVERGIKAVALSGDLSQSARNRIMNEFERGLHK 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++V +D+A+RGLDI +V HV NFD+P AE Y+HRIGRTGRAG G A + V +D Sbjct: 299 VLVTTDVASRGLDISNVSHVVNFDMPKHAEEYVHRIGRTGRAGNKGIAISFVGPKDWNSF 358 Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPPLEKIDIAQHNHARKNN-PIPQKSTGFDRRKK 411 IE ++K++ + L G L P +K + H +K + P +K+ +R K Sbjct: 359 KNIEGFLDKRMSFQTLEGLEGKFKGLAPKKKKTFSKKPQHKKKGDKPTQKKAAVPKKRNK 418 Query: 412 NY 413 ++ Sbjct: 419 SF 420 >gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio parahaemolyticus AN-5034] gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio parahaemolyticus Peru-466] gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio parahaemolyticus K5030] gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio parahaemolyticus Peru-466] gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio parahaemolyticus AN-5034] gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio parahaemolyticus K5030] Length = 444 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 210/389 (53%), Gaps = 10/389 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL +++ + + KPT IQ + IP+ + D+ ++TG+GKT +FVLPML Sbjct: 1 MQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ + PR +IL PTRELA QV + AL++GG F Q K L Sbjct: 61 HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 R ++ TPGR+ DH L ++ +E L++DEADRMLD+GF P ++ I + R Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRR 180 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTL+FSAT+ E+ ++ L PKRI V + + I F K A+L++ Sbjct: 181 QTLMFSATLDHAEVNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLC-DHLDHKEAILER 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L S+ + IIF + + L L ++ A+ GN++Q R I+S F+ + Sbjct: 240 VL-SEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++V +D+A+RGLDI V HV NFD+P E Y+HR+GRTGRAG G A +LV +D Sbjct: 299 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 358 Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPP 381 IE +++ + + L G L PP Sbjct: 359 KRIETYLQQDLAFSVFEDLKGKFKGLKPP 387 >gi|89075877|ref|ZP_01162256.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34] gi|89048406|gb|EAR53983.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34] Length = 461 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 218/367 (59%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L+P ++ + GY TPIQ +++PL+L+ DV +TG+GKTA+F L +L Sbjct: 6 FSTLNLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQN 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLER 121 L+ R RV+ TL+L PTRELA QVA + + +N+ V L GG PF Q LE Sbjct: 66 LKVKRFRVQ---TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR+ +H +G L ++ + LV+DEADRML+MGF + I + P RQTL Sbjct: 123 GAHIIVGTPGRVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIDVAPSDRQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++ +++ ++NP ++V + + +H F + + A+ +LL S Sbjct: 183 LFSATYPTQIASIAKRIMRNPVEVKVESNHDNSSISQH-FYKVESNDDRLRAV--RLLLS 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q ++ +IFCN K+ + LE GFS A+HG+++QR R + L F + ++VA Sbjct: 240 QHRPESCVIFCNTKREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVA 299 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI ++ V N+ + E ++HRIGRTGRAG G A +L + ++ + +E Sbjct: 300 TDVAARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLE 359 Query: 362 KLIEKKV 368 +++ + Sbjct: 360 DYLDRPI 366 >gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1] Length = 560 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110 Query: 63 L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QV+ + V + GG+ +E+Q Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ P Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 230 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232 +RQT+LFSATM + ++ + L+ P + +T ++ +T + + A K Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ ++LQ+ D K IIFC K+ L L+ +GF AIHG++ Q +R K L F+ Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 346 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 D+ KLI K LN +LS P+E + H Sbjct: 407 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 434 >gi|91206537|sp|Q4X195|DBP2_ASPFU RecName: Full=ATP-dependent RNA helicase dbp2 Length = 547 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 209/374 (55%), Gaps = 12/374 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F + G V+ V G+ +PT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 122 NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 181 Query: 62 ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L G P LIL PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 182 HINAQPLLAPGDG----PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQ 237 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 238 IRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR 297 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT ++SAT E+++++ +FL + ++ + + +A V + + K+ ++ Sbjct: 298 PDRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMI 357 Query: 236 QQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L + + N +IF K+ + L + G+ +IHG+ Q+ R +L+ FK G Sbjct: 358 KHLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 417 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +MVA+D+A+RG+D+ D+ HV N+D PN +E+YIHRIGRTGRAG G A T E+ Sbjct: 418 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENS 477 Query: 355 KHI-DAIEKLIEKK 367 K D + L E K Sbjct: 478 KQARDLVTILTEAK 491 >gi|281212472|gb|EFA86632.1| putative RNA helicase [Polysphondylium pallidum PN500] Length = 728 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 148/397 (37%), Positives = 225/397 (56%), Gaps = 22/397 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F G ++ ++ GY PT IQ + +P+ L D+ IA+TG+GKTASF+ P + Sbjct: 255 FGHYGFDNLLIQSIQKQGYESPTSIQKQAVPIALSGRDLIAIAKTGSGKTASFIWPAIPH 314 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LEKG P L + PTRELA Q+ +K+ K Y + +++ GG+ Q Sbjct: 315 IMDQPYLEKGDG----PIALFVAPTRELAHQIYLETQKFAKPYKIRTSVIYGGVTKLLQC 370 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 ++L+ G ++L+ TPGR++D MN + LV+DEADRM DMGF P +Q+I + Sbjct: 371 RELKAGCEILVTTPGRLIDMIKLKATKMNRVTYLVLDEADRMFDMGFGPQVQSIVGQIRP 430 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEV-NTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT +++++ N L +P RI + NT S+ + ++ V + +K L Sbjct: 431 DRQTLLFSATFPPNIEELARNILIDPIRISIGNTGSANQDITQNVIV--LSSNGEKWNWL 488 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L S + N IIF + K V L +L K GF +HG+ DQ+ R I++ FK+G+ Sbjct: 489 IQRLPSLVSQGNVIIFVSTKVAVDELSMNLVKFGFPSEGLHGDKDQQERTMIINKFKDGS 548 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGLDI + +V NFD +++ HRIGRTGRAG G A+TL+ +DI Sbjct: 549 VPILVATDVAARGLDINLIRNVVNFDPSRDIDSHTHRIGRTGRAGTQGIAYTLITPKDIH 608 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 + K +E+ + + PP E I IA +N+ Sbjct: 609 FSAELVKHLEEA--------NQIVPP-ELISIAMNNN 636 >gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes SK187] gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137] gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes SK187] gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137] gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1] gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1] gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1] gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4] gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1] gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1] gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2] gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1] gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2] gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2] gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3] Length = 560 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110 Query: 63 L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QV+ + V + GG+ +E+Q Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ P Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 230 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232 +RQT+LFSATM + ++ + L+ P + +T ++ +T + + A K Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ ++LQ+ D K IIFC K+ L L+ +GF AIHG++ Q +R K L F+ Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 346 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 D+ KLI K LN +LS P+E + H Sbjct: 407 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 434 >gi|238787599|ref|ZP_04631397.1| DEAD/DEAH box helicase domain protein [Yersinia frederiksenii ATCC 33641] gi|238724386|gb|EEQ16028.1| DEAD/DEAH box helicase domain protein [Yersinia frederiksenii ATCC 33641] Length = 609 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 208/338 (61%), Gaps = 9/338 (2%) Query: 44 IAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLT 102 +AQTG+GKTA+F LP+L ++ ++ P+ L+L PTRELA QVA+ + K+ + Sbjct: 1 MAQTGSGKTAAFGLPLLHNID---PELKAPQVLVLAPTRELAIQVAEALTSFSKDIKGVN 57 Query: 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162 V L GG ++ Q + L +G V++ TPGR+LDH RG L ++N++ LV+DEAD ML MG Sbjct: 58 VVALYGGQRYDVQLRALRQGPQVVVGTPGRLLDHLKRGTLNLSNLKGLVLDEADEMLRMG 117 Query: 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222 FI ++NI + +P QT LFSATM + +++++ F++ P+ + + + +T I + Sbjct: 118 FIEDVENILAQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQVYW 177 Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 Y K AL+ + L+++D IIF K + + +LE+ G+S A++G+++Q Sbjct: 178 KVGGGYRKNEALV-RFLEAED-FDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQA 235 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R + L K+G + +++A+D+AARGLD+ + V N+D+P +E+Y+HRIGRTGRAGR Sbjct: 236 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295 Query: 343 GKAFTLVAKEDIKHIDAIE---KLIEKKVDWLNGDLSS 377 G+A V + + + IE KL +V+ N L S Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVELPNAQLLS 333 >gi|120556818|gb|ABM26902.1| SrmB [Serratia marcescens] Length = 439 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/355 (40%), Positives = 211/355 (59%), Gaps = 8/355 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L +++ A+ D GY +PT IQ IP + DV G A TGTGKTA+F+LP+L Sbjct: 6 FSELELDDRLIDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD + + +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV++ T GR+L + +E L++DEADRMLDMGF I+ I++ + QTL Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQTL 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT+ E +++ +E L+ P +E + PS + ++ + A Q+ K ALL L Sbjct: 186 LFSATLEGEAIREFAERILKEPVEVEAD-PSRRERKKILQWYYRADDVQH--KTALLIHL 242 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L+ D K+ +IF +++ V L L + G + C + G + Q R + + +G + + Sbjct: 243 LKQPDVQKS-VIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNV 301 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +VA+D+AARGLDI D+ HVFNFD+P A+ Y+HRIGRTGRAGR G A +LV D Sbjct: 302 LVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHD 356 >gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A] gi|74662479|sp|Q7RY59|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3 gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A] Length = 515 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/387 (36%), Positives = 223/387 (57%), Gaps = 17/387 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLG+ + A GY PTPIQ ++IPL LQ D+ GIA+TG+GKTA+F LP+L Sbjct: 92 FKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQA 151 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L A + L+L PTRELAAQ+A FE G +L AL++GG+ Q L + Sbjct: 152 LLDKPAPLF---ALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKK 208 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 V++ TPGR+LDH + K + +++ LV+DEADR+LDM F P ++ I +P R+T Sbjct: 209 PHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERRTF 268 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNT-PSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATM+ +++ + L++P ++ V++ +T T++ +V + + K L L Sbjct: 269 LFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYV--FIPHMHKDTYLVYLC- 325 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + IIF + L G +HG + Q +R+ L+ F+ G+ +++V Sbjct: 326 NEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREILV 385 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDIP+V V N D+P ++ Y+HR+GRT RAG+ G A ++V + D++ I Sbjct: 386 ATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRI 445 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDI 387 E + K+D PLEK ++ Sbjct: 446 EAALGHKLDEY---------PLEKDEV 463 >gi|325192175|emb|CCA26630.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14] Length = 627 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 213/363 (58%), Gaps = 15/363 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ L P+V + Y+KPTP+Q +IP+ L D+ AQTG+GKT F+ P L Sbjct: 152 FTEVELGPEVCRNLELCKYMKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAA 211 Query: 63 LEKGRA----------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 + + A R P LIL PTRELA+Q+ D +K+ + +L GG Sbjct: 212 MLREGAKPVDGAGSSQRKSHPAALILAPTRELASQIYDEAKKFCYCTGVAPVVLYGGAEV 271 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q ++LERG D+L+ TPGR++D RG++ ++ I L++DEADRMLDMGF P I+ + Sbjct: 272 GRQVRELERGCDLLVATPGRLVDLMERGRVSLSGIRFLILDEADRMLDMGFEPQIRRLVE 331 Query: 173 L--VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230 +P RQT +FSAT E+Q+++ +FLQ+ + V S ++ ++ + + K Sbjct: 332 QEDMPRERQTFMFSATFPREMQRLAADFLQDYIFLTVGRVGSASKDVKQQ-IEFIEPHDK 390 Query: 231 KCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSN 290 + L++ L Q Q+ + ++F K+ L L ++GF +IHG+ QR R L++ Sbjct: 391 EDYLVRFLNQVQEGLI--LVFVETKRGADYLEQLLCREGFPATSIHGDRTQREREAALNS 448 Query: 291 FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 F+ G ++VA+D+AARGLDI V HV NFD+PN ++Y+HRIGRTGRAG G A +++ Sbjct: 449 FRSGRTPVLVATDVAARGLDINGVTHVINFDLPNNIDDYVHRIGRTGRAGNLGHALSMMT 508 Query: 351 KED 353 ++ Sbjct: 509 DKN 511 >gi|188532351|ref|YP_001906148.1| ATP-dependent RNA helicase RhlB [Erwinia tasmaniensis Et1/99] gi|226739538|sp|B2VG58|RHLB_ERWT9 RecName: Full=ATP-dependent RNA helicase rhlB gi|188027393|emb|CAO95240.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99] Length = 430 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/391 (38%), Positives = 223/391 (57%), Gaps = 17/391 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ G+ TPIQ +P L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHH 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +GR + PR LIL PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAPEGR-QTNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE G DVLI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLENGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAA 189 Query: 178 RQTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q L LFSAT++ +++++ + N + +EV T I E F Y +K L Sbjct: 190 NQRLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELF---YPSNEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ L++ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 247 LQTLIE-EEWPDRTIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG +G + +L +E Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYA 365 Query: 355 KHIDAIEKLIEKK--VDWLNGD--LSSLNPP 381 ++ AIE+ I V N D ++ L PP Sbjct: 366 LNLPAIEEYIGHSITVSRYNSDALMTDLPPP 396 >gi|324517616|gb|ADY46875.1| Eukaryotic initiation factor 4A-III [Ascaris suum] Length = 405 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 214/379 (56%), Gaps = 11/379 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D+GL +++ + G+ KP+ IQ + I +++ DV AQ+GTGKTA+F +++ Sbjct: 34 FDDMGLREELIRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATF---SISV 90 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ +R + LIL PTRELA+Q+ G N+ IGG +KL+ G Sbjct: 91 LQGLNTTIRETQALILSPTRELASQIQKVILALGDYMNVQCHACIGGTNVGEDIRKLDYG 150 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 V+ TPGR+ D R L +I +LV+DEAD ML+ GF + +I +P Q +L Sbjct: 151 QHVVSGTPGRVFDMIRRRNLRTRSIRMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 210 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVAT---YAQYSKKCALLQQLL 239 SAT+ E+ +++ F+ NP RI V T E I+ FVA ++ C L L Sbjct: 211 LSATLPHEILEMTSKFMTNPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLYDTL- 269 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 T+ +IFCN ++ V L L++ F+V A+HG+++Q+ R I+ F+ GT +L+ Sbjct: 270 ----TITQAVIFCNTRRKVDWLAEKLKEANFTVSAMHGDMEQKERDAIVKEFRSGTSRLL 325 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+ ARGLDIP V V N+D+PN E YIHRIGR+GR GR G A V +DI+ + Sbjct: 326 ISTDVFARGLDIPQVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRD 385 Query: 360 IEKLIEKKVDWLNGDLSSL 378 IE+ ++D + +++ L Sbjct: 386 IEQYYATQIDEMPMNVADL 404 >gi|301754307|ref|XP_002912967.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Ailuropoda melanoleuca] Length = 1031 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|119895518|ref|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus] gi|297477226|ref|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus] gi|296485325|gb|DAA27440.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus] Length = 1031 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|73971268|ref|XP_531911.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Canis familiaris] gi|194219918|ref|XP_001918233.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX46 (DEAD box protein 46) (PRP5 homolog) [Equus caballus] Length = 1031 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 243/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ ++ L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|159036117|ref|YP_001535370.1| DEAD/DEAH box helicase domain-containing protein [Salinispora arenicola CNS-205] gi|157914952|gb|ABV96379.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola CNS-205] Length = 548 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 2/363 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+LG + V A+ AG + IQ +P+ L+ D+ G A TGTGKT F +P+L Sbjct: 27 FAELGARQETVDALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLEQ 86 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L P+ L++ PTREL QVA + + G + V + GG+ +E Q + L Sbjct: 87 VLAPAEGGDGTPQALVVVPTRELGIQVAKDLQAAGSTRGVRVLPIYGGVAYEPQIEALRS 146 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G ++L+ TPGR+LD + L ++ + LV+DEADRMLD+GF+ ++ I +++P RQT+ Sbjct: 147 GVEILVGTPGRLLDLAKQKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILPEDRQTM 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATM D + +S FL+ P I + T + + +A K ++ ++LQ+ Sbjct: 207 LFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSLNKIEIVARILQA 266 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + +IF K+ + L+ +GF+V A+HG++ Q +R + L F+ G I +VA Sbjct: 267 RGRGLT-MIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLVA 325 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ V HV N+D P + Y HRIGRTGRAG G A T V +D+ I+ Sbjct: 326 TDVAARGIDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRIID 385 Query: 362 KLI 364 K + Sbjct: 386 KTL 388 >gi|110834781|ref|YP_693640.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2] gi|110647892|emb|CAL17368.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2] Length = 422 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/374 (36%), Positives = 214/374 (57%), Gaps = 10/374 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L ++ + D+G+ TPIQ + + L D G AQTGTGKTA+F++ ++ Sbjct: 25 FHDFDLHLDLMHGIADSGFQYCTPIQAEVLEHTLAGADAIGRAQTGTGKTAAFLITVIND 84 Query: 63 LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K V+ PR LI+ PTRELA Q+ + K +L V ++GG+ F Q ++ Sbjct: 85 LLKHPIDVQRFAGEPRALIVAPTRELAMQIEKDANILTKYTDLQVMSVVGGMNFNRQQER 144 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ + D+L+ TPGR+LD R L ++ +E LV+DEADRMLDMGFIP ++ I + P + Sbjct: 145 LQNKLIDILVATPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKS 204 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT LFSAT D++ +S + Q+ + +E+ T +T+E T K LL Sbjct: 205 QYRQTQLFSATFNDDVMNLSRRWTQDAEIVEIEPTQVTTDTVEQKVYIT--NTDDKFKLL 262 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + M I+F N++ +C L+K+G V I G++ Q R K L F+ G Sbjct: 263 YNLITGMN-MDKVIVFANRRDITRRVCDRLQKRGLKVSLISGDVPQTQRSKTLERFRAGD 321 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q+++A+D+A RG+ I V HV N+++P E+Y+HRIGRTGRAG G + + ++D Sbjct: 322 LQVLIATDVAGRGIHIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAF 381 Query: 356 HIDAIEKLIEKKVD 369 + +E I K++ Sbjct: 382 LLPELENAIGMKLE 395 >gi|110799701|ref|YP_695305.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC 13124] gi|168209167|ref|ZP_02634792.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str. ATCC 3626] gi|110674348|gb|ABG83335.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC 13124] gi|170712632|gb|EDT24814.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str. ATCC 3626] Length = 478 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 220/364 (60%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ A+ + GY P+ +Q +IP +L+ D+ +QTG+GKTASF +P Sbjct: 1 MKFNELNLSDDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK + + L+L PTRELA QV D G+ + A + G PF Q ++L+ Sbjct: 59 -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR+ DH RG L ++ + +VIDEAD+ML MGFI I++I + + T Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT + E++++ E +++NP +EV + + IE + + +K AL + L Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYS 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+FCN + V ++ L+ +G + +HG+++Q+ R++++ NF++ +++V Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ + + V N++VP E+Y+HRIGRTGRAGR GKA T V + K+++ + Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354 Query: 361 EKLI 364 E+ I Sbjct: 355 EEYI 358 >gi|227824325|ref|ZP_03989157.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21] gi|226904824|gb|EEH90742.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21] Length = 444 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 139/410 (33%), Positives = 222/410 (54%), Gaps = 20/410 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA ++P +V + G PTP+Q + IP +LQ DV AQTG GKT SFV+P+ T Sbjct: 35 FAQFAIAPSLVERLHQTGKDIPTPVQERAIPALLQGRDVICRAQTGVGKTLSFVVPLFTK 94 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + + + V+ LIL PTRELA Q A +K + V + GG ++ + +KL Sbjct: 95 ITEVKTFVQ---ALILSPTRELAQQTAGEIKKLADGTPVRVLAVSGGKDYDEERRKLGNK 151 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A+VL+ TPGR+LDH +G + I LV+DE D ML GF I+ + SL+P QT++ Sbjct: 152 ANVLVGTPGRLLDHLRKGNTSLGGITYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMM 211 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SAT+ +E++K+ + +NP+ I+++ +TA TI + + ++ LQ ++ Sbjct: 212 CSATLDEEVRKLGKMITKNPRLIDIDPKEATASTIHQVCIKVSEDHKEEA--LQTIIDRC 269 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + ++FC K+ + + L +GF+ +HG++ Q+ R + + F++ Q++VAS Sbjct: 270 NPFLM-LVFCKSKERAIEVYDWLYGKGFNADVLHGDMSQQKRRQAMERFRKAKTQILVAS 328 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARGLD+ V V NFD+P+ + Y+HRIGRTGRAG G+A T ++ + Sbjct: 329 DIAARGLDVEGVTQVVNFDIPHDPDWYVHRIGRTGRAGNEGEAITFYTADETR------- 381 Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 WL L LE+ ++A R P+ K +R K+ Sbjct: 382 -------WLTHLEDKLGITLERQNLAGEKVRRTVKPVRPKKKRLPKRGKS 424 >gi|224139932|ref|XP_002323346.1| predicted protein [Populus trichocarpa] gi|222867976|gb|EEF05107.1| predicted protein [Populus trichocarpa] Length = 611 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 147/381 (38%), Positives = 213/381 (55%), Gaps = 19/381 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FAD+ L V + YVKPTP+Q IP++L D+ AQTG+GKTA+F P++ Sbjct: 157 FADIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIAG 216 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + + R P LIL PTREL++Q+ D +K+ + V ++ GG P Q Sbjct: 217 IMREQYVQRPHGGRTMYPLALILSPTRELSSQIHDEAKKFSYQTGVKVVVVYGGAPINQQ 276 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG D+L+ TPGR++D R ++ + I L +DEADRMLDMGF P I+ I + Sbjct: 277 LRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMD 336 Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT E+Q+++ +FL N + V S+ + I Y Q K Sbjct: 337 MPPCGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQR--VEYVQEIDK 394 Query: 232 CALLQQLLQSQ-DTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 + L LL +Q +T N ++F KK +L H L GF +IHG+ Q+ R Sbjct: 395 RSHLMDLLHAQRETEVNSKHSLTLVFVETKKGADSLEHLLHVNGFPATSIHGDRTQQERE 454 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG G A Sbjct: 455 MALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGLA 514 Query: 346 FTLVAKEDIKHIDAIEKLIEK 366 + + + L+++ Sbjct: 515 TAFFNENSMSLARPLADLMQE 535 >gi|310764827|gb|ADP09777.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617] Length = 442 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 134/353 (37%), Positives = 204/353 (57%), Gaps = 4/353 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ ++ + G+ +PT IQ + IP L+ DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD + K+ +L +A + GG+ F + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV++ T GR+L + +E L++DEADRMLDMGF I+ I++ + +QTL Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTL 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ E +Q +E L P IE + + I+ + K ALL LL+ Sbjct: 186 LFSATLEGEAIQDFAERILNEPVEIEADPARRERKKIQQWYYRA-DDIKHKTALLLHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + ++F +++ V +C L + G + + G + Q R + + +G + ++V Sbjct: 245 -QPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+AARG+DI DV HV NFD+P ++ Y+HRIGRTGRAG+ G A +LV D Sbjct: 304 ATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHD 356 >gi|307132128|ref|YP_003884144.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] gi|306529657|gb|ADM99587.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] Length = 450 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 138/350 (39%), Positives = 203/350 (58%), Gaps = 10/350 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLIL 78 G+ +PT IQ + IP ++ DV G A TGTGKTA+++LP+L +L+ R + PR LIL Sbjct: 23 GFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKSGPPRILIL 82 Query: 79 EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVAD + +L +A + GG+ + + DV++ T GR+L + Sbjct: 83 TPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIK 142 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSEN 197 +E L++DEADRMLDMGF I++I + +QT+LFSAT+ D +Q +E Sbjct: 143 EENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDFAER 202 Query: 198 FLQNPKRIEVNTPSSTAE---TIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ 254 L +P IEV S E ++ + A Q+ K ALL LL+ D ++ I+F + Sbjct: 203 LLNDP--IEVEAEPSRRERKKILQWYYRADDVQH--KTALLSHLLKQPDVTRS-IVFVRK 257 Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 ++ V L L G C + G + Q R + + EG ++++VA+D+AARGLDI DV Sbjct: 258 RERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDILDV 317 Query: 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364 HVFNFD+P ++ Y+HRIGRTGRAGR G A +LV D ++ I + + Sbjct: 318 SHVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDYLLLEKIGRYL 367 >gi|293399873|ref|ZP_06644019.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306273|gb|EFE47516.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 477 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 211/355 (59%), Gaps = 10/355 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + L ++ A+ Y + PIQ + IP +L+ DV ++TG+GKTASF +P++ Sbjct: 1 MQFKEFALHTDILKALEKLHYEQVLPIQEQVIPEILKGRDVIVRSRTGSGKTASFAIPIV 60 Query: 61 T--ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 I E+ R P+ +IL PTRELA Q+ ++F+ G + + G P++ Q + Sbjct: 61 QELIWEE-----REPQAIILTPTRELALQIKEDFDNIGAYRRIKTVAIFGKQPYKFQIQD 115 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L++ A V++ TPGRILDH R L +I ++IDEAD ML+MGFI +Q+I + P + Sbjct: 116 LKQRAHVVVGTPGRILDHLERETLKTGHIRYVIIDEADEMLNMGFIESVQSIFNYFPGNK 175 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 T LFSATM +Q+++E F++ PK I ++ ++ I H A + +K + L+QL Sbjct: 176 ITCLFSATMPQPIQELAEGFMKEPKLITLSEETTVNAAITH--YAYEVKEKQKLSFLKQL 233 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ + IIF ++ V +C L V +HG + Q R+ + +FK+G I++ Sbjct: 234 L-CKEQPASCIIFARTQEGVKTICEELYALDMCVDKLHGGMLQEDRIGNIRDFKKGKIRI 292 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +VA+D+AARG+D+ D+ H+ N+D+PN+ E Y+HRIGRTGR G A T + + D Sbjct: 293 LVATDVAARGIDVQDISHIINYDMPNQKETYLHRIGRTGRQSASGVAITFINEYD 347 >gi|261188002|ref|XP_002620418.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081] gi|239593429|gb|EEQ76010.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081] Length = 548 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 211/374 (56%), Gaps = 13/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 132 FDEAGFPQYVMSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 191 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 192 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 247 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 248 RDLTRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 307 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT ++++++++FL + ++ + + +A V +++ K+ + + Sbjct: 308 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 367 Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L + + K+ +IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 368 HLDRIMEENKSAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 427 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A TL ++ Sbjct: 428 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 487 Query: 355 KHI-DAIEKLIEKK 367 K D + L E K Sbjct: 488 KQARDLVSILTESK 501 >gi|251787806|ref|YP_003002527.1| ATP-dependent RNA helicase RhlB [Dickeya zeae Ech1591] gi|247536427|gb|ACT05048.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591] Length = 428 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 214/373 (57%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F+D L P+V+ A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR LI+ PTRELA Q+ + E K L + L GG ++ Q K Sbjct: 71 LLTHPASSERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + M I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LEDGVDILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL +F +G Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTQGN 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE ++ Sbjct: 367 NLPAIEDYTGHRI 379 >gi|119481045|ref|XP_001260551.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181] gi|134034066|sp|A1DGZ7|DBP2_NEOFI RecName: Full=ATP-dependent RNA helicase dbp2 gi|119408705|gb|EAW18654.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181] Length = 545 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 209/374 (55%), Gaps = 12/374 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F + G V+ V G+ +PT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 120 NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 179 Query: 62 ------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L G P LIL PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 180 HINAQPLLAPGDG----PIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQ 235 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 236 IRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR 295 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT ++SAT E+++++ +FL + ++ + + +A V + + K+ ++ Sbjct: 296 PDRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMI 355 Query: 236 QQLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L + + N +IF K+ + L + G+ +IHG+ Q+ R +L+ FK G Sbjct: 356 KHLEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 415 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +MVA+D+A+RG+D+ D+ HV N+D PN +E+YIHRIGRTGRAG G A T E+ Sbjct: 416 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENS 475 Query: 355 KHI-DAIEKLIEKK 367 K D + L E K Sbjct: 476 KQARDLVTILTEAK 489 >gi|145632266|ref|ZP_01788001.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655] gi|144987173|gb|EDJ93703.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655] Length = 415 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 216/368 (58%), Gaps = 10/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L P V A+ G+ TPIQ ++P+ L DV G AQTGTGKT +F+ Sbjct: 11 FSDLSLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTIAFLTATFHH 70 Query: 63 L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + PR LIL PTRELA Q++++ E K L AL GG ++ Q + + Sbjct: 71 LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI--TSLVPFT 177 ERG D+LI T GR++D+ +G + ++ I+++V+DEADRM D+GFI I+ + VP + Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVISLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQS 190 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 R T+LFSAT++ ++++++ + +P+ IE+ T I E F Y K ALL Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHCIKEELF---YPSNQDKMALLL 247 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + I+F N K + L G V + G++ Q+ R+ +L F +G + Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL I DV HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E + Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366 Query: 357 IDAIEKLI 364 + AIE+ I Sbjct: 367 LPAIEEYI 374 >gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens] gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens] Length = 538 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 9/371 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F D+ L ++ V Y PTPIQ + +P+ L D+ G A+TG+GKTA+F LPM+ Sbjct: 112 FEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQH 171 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 + + R P L+L PTRELA Q+ + + ++ ++++GG Q +L Sbjct: 172 CLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQRSEL 231 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G ++++ TPGR +DH +G ++ + +V+DEADRMLDMGF P I+ + +P Q Sbjct: 232 RAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQ 291 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALL-- 235 TLLFSATM +E++ +++ +L P R++V SS + + + ALL Sbjct: 292 TLLFSATMPEEIEALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLLALLVD 351 Query: 236 --QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 Q L S I+F +K + +L +QG A+HG Q R L +F++ Sbjct: 352 EHSQSLDSNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRK 411 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 GT ++VA+D+A+RGLD+ V HV N D+P E+Y+HRIGRTGRAG G+A + + D Sbjct: 412 GTTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTERD 471 Query: 354 IKHIDAIEKLI 364 + + I + I Sbjct: 472 VFLVAQIRRAI 482 >gi|148235819|ref|NP_001089455.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Xenopus laevis] gi|66910710|gb|AAH97561.1| MGC114699 protein [Xenopus laevis] Length = 758 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 208/368 (56%), Gaps = 11/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ + +PTPIQ IP+ L D+C A TGTGKTA+F+LP+L Sbjct: 181 LTFQDMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVL 240 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTREL QV + + +T L +GG+ + Q L Sbjct: 241 ERLIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQEAALR 300 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVLI TPGR++DH N +N IE+L++DEADRMLD F ++ I L RQ Sbjct: 301 SGPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQ 360 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-----QYSKKCAL 234 TLLFSATM++E++ ++ L+NP RI VN+ + A + FV + + CAL Sbjct: 361 TLLFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACAL 420 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L + Q + ++F KK + L G V +HGN+ Q R++ L FK+ Sbjct: 421 LTRTFQD-----HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 475 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 I ++VA+D+AARGLDI V V N +P ++Y+HR+GRT RAG+ G++ +LV +E+ Sbjct: 476 QIDILVATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEER 535 Query: 355 KHIDAIEK 362 K + I K Sbjct: 536 KMLKEIVK 543 >gi|294140317|ref|YP_003556295.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea DSS12] gi|293326786|dbj|BAJ01517.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea DSS12] Length = 431 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 217/372 (58%), Gaps = 10/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL P+++ + Y+ PT +Q K IP VL D+ A TG+GKTA+F LPML Sbjct: 15 FEQLGLIPELLKRLTLLEYLNPTLVQGKAIPAVLLGRDLLAGAITGSGKTAAFALPMLQK 74 Query: 63 LEKGRARVRMPRT---LILEPTRELAAQVADNFEKYGK--NYNLTVALLIGGIPFEAQNK 117 L K A+V L+L PTRELA QVAD+F+ YG+ L + + GG+ Q Sbjct: 75 LAKSSAKVSKGNQVCGLVLVPTRELAQQVADSFKSYGQLIKPRLKIEAVFGGVSANTQML 134 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 + GADVL+ TPGR+LD + + +++++ LV+DEADRML +GF + + +L+P Sbjct: 135 AMRGGADVLVATPGRLLDLISSNAIKLDDVKTLVLDEADRMLSLGFTEELNQVLALLPKH 194 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +QTLLFSAT +E++ +++ L +P +E+ S T++ ++K ALL Sbjct: 195 KQTLLFSATFPEEVKTLTDKLLSSP--VEIQIQSEEQSTLKQQVYTV--NRTRKTALLAH 250 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ ++ + ++F + K L L K G + H + Q +R K+L FK G Sbjct: 251 LIK-ENNWRQVLVFASAKNTCNRLEQKLAKAGIAAQIFHSDKSQGARTKVLEAFKNGETH 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +++A+D+AARG+DI + V N+++P +Y+HRIGR+GRAG G A +L++ ++ +H Sbjct: 310 VLIATDIAARGIDIEKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQHF 369 Query: 358 DAIEKLIEKKVD 369 IEK + K+D Sbjct: 370 KLIEKKNKIKLD 381 >gi|302308420|ref|NP_985329.2| AFL221Cp [Ashbya gossypii ATCC 10895] gi|299790624|gb|AAS53153.2| AFL221Cp [Ashbya gossypii ATCC 10895] Length = 557 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 129/356 (36%), Positives = 202/356 (56%), Gaps = 11/356 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V + G+ KPT IQ + P+ L D+ G+A TG+GKT S+ LP + Sbjct: 116 FDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 175 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+G++ + + GG+P Q Sbjct: 176 INAQPLLSPGDG----PVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQI 231 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L+RG ++LI TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 232 RDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 291 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL++SAT E+Q+++ ++L +P ++ + + A V + + K+ L++ Sbjct: 292 DRQTLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVK 351 Query: 237 QL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + S+D IIF + K+ + L + G+ AIHG+ Q+ R +L+ F+ G Sbjct: 352 HLEIASKDKDSKIIIFASTKRTCDEITSYLRQDGWPALAIHGDKQQQERDWVLNEFRTGR 411 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 +MVA+D+AARG+D+ + V N+D+P E+Y+HRIGRTGRAG G A + + Sbjct: 412 SPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE 467 >gi|170679910|ref|YP_001746099.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5] gi|226739537|sp|B1LLV3|RHLB_ECOSM RecName: Full=ATP-dependent RNA helicase rhlB gi|170517628|gb|ACB15806.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5] Length = 421 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLCAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|21222498|ref|NP_628277.1| ATP-dependent RNA helicase [Streptomyces coelicolor A3(2)] gi|5918498|emb|CAB56376.1| ATP-dependent RNA helicase [Streptomyces coelicolor A3(2)] Length = 740 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 190/346 (54%), Gaps = 5/346 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL VV + G P PIQ TIP L D+ G +TG+GKT SF LP L Sbjct: 63 FADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAT 122 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L GR PR +IL PTRELA QVAD + YG L + ++ GG Q LERG Sbjct: 123 LAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 182 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVL+ TPGR+ D NRG + N++I V+DEAD+M D+GF+P + + VP Q +L Sbjct: 183 VDVLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRML 242 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +E++ + + +L++P EV+ T+ H + K A + + S+ Sbjct: 243 FSATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVV---KPKDKAPVTAAIASR 299 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 IIF + + L G A+HG + Q +R + L++FK+G + ++VA+ Sbjct: 300 KGRT--IIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVAT 357 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 D+AARG+ + + V N D ++Y+HR GRT RAGR G +L Sbjct: 358 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSL 403 >gi|119475746|ref|ZP_01616099.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143] gi|119451949|gb|EAW33182.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143] Length = 451 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 214/365 (58%), Gaps = 6/365 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 ++L L +++ A+ G+ + T +Q + IP L+R D+ AQTG+GKTA+F+LP+L Sbjct: 4 LSELALHKQLLKALDKLGFSEATEVQAQAIPEALKRRDLMVSAQTGSGKTAAFLLPILHQ 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + R LIL PTRELA Q NFE + L+IGG F+ Q L + Sbjct: 64 ILTEEVSTSGTRVLILLPTRELALQTQKNFEMLAAFTYIKSGLIIGGEAFKHQVATLRKD 123 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +VLI TPGR++DH +G +E+LV+DEADRMLDMGF + I S RQ LL Sbjct: 124 PEVLIATPGRLVDHIEKGTPDFRQLEVLVLDEADRMLDMGFAIDMNTIASSCNPERQNLL 183 Query: 183 FSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQLLQ 240 FSA++ E L K+S++F ++P I V +P + I + +A ++ +K L++ L+ Sbjct: 184 FSASLKHEGLGKISKSF-RDPVAIAVGSPDHQHQDICQQLVLADTIKHKEK--LVEALID 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + K ++FCN + L H L + V IHG+I Q R ++++ F++G I ++V Sbjct: 241 EEQAQKT-LVFCNTRVQCQQLSHLLRYKKMKVGYIHGDISQNDRKQVMNQFRQGGIAVLV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI V V NF++ ++++HR+GRTGRAG GKA TL+ + + +I Sbjct: 300 ATDVAARGLDIKGVDLVVNFNIAQSGDDHLHRVGRTGRAGEQGKAITLIDSNEWNQMSSI 359 Query: 361 EKLIE 365 E+ ++ Sbjct: 360 ERYLK 364 >gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae] gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae] Length = 614 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 222/393 (56%), Gaps = 24/393 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F DL L + + + Y+KPTP+Q IP+ D+ AQTG+GKTA+F++P+L+ Sbjct: 139 EFTDLDLGEIISNNIKLSNYMKPTPVQKYAIPIARANRDLMACAQTGSGKTAAFLIPILS 198 Query: 62 IL---------EKGR------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106 ++ + GR +R R P L+L PTRELA+Q+ D +K+ ++ ++ Sbjct: 199 LIYENGPQGLPQHGRQYGGSGSRKRYPLALVLAPTRELASQIYDESKKFAYRSHVRPCVV 258 Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166 GG Q + LERG +L+ TPGR++D RG++ ++ I+ L++DEADRMLDMGF P Sbjct: 259 YGGADIGGQMRDLERGCHLLVGTPGRLVDMMERGRIGLDYIKYLILDEADRMLDMGFEPQ 318 Query: 167 IQNITS--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222 I+ I +P T R+T++FSAT E+Q ++ +FL N + V ST++ I V Sbjct: 319 IRRIVEQDTMPGTGKRRTMMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSDNITQKVV 378 Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 Q K+ LL L + + F KK +L L +G+ V +IHG+ QR Sbjct: 379 WVDEQ-DKRSFLLDLLNATGKEDSLTLTFVETKKGADSLEAFLYSEGYPVSSIHGDRSQR 437 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R L F+ G ++VA+ +AARGLDIP+V HV NFD+P+ + Y+HRIGRTGR G Sbjct: 438 EREDALMTFRTGVTPILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNL 497 Query: 343 GKAFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371 G A + ++ + D ++ LIE K + WL Sbjct: 498 GLATSFFNDKNRNVVRDLVDILIESKQELPPWL 530 >gi|332662776|ref|YP_004445564.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332331590|gb|AEE48691.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 442 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 218/369 (59%), Gaps = 4/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F+DL L+ ++ A+ D G PT IQ K +V+ DVCGIAQTGTGKT +++LP L Sbjct: 1 MNFSDLNLNKPLLNALQDIGISTPTTIQAKVFSVVMSGKDVCGIAQTGTGKTFAYLLPCL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + + P+ LI+ PTREL QV + EK K +L V + GG+ + Q +L Sbjct: 61 RQYEYSKKKT--PQVLIIVPTRELVTQVVEAVEKLSKYLSLVVVGVYGGVNLKPQAAQLA 118 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +GADV++ TPGR++D + G L +++ LVIDE D ML++GF ++ I +P RQ Sbjct: 119 QGADVVVGTPGRLVDLLSNGVLKTKDLKKLVIDEFDEMLNLGFRAQLKVIFDSIPERRQN 178 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT+ ++++ + ++ N RIE + E I+ + Y+ K +LL+ LL Sbjct: 179 LLFSATLNEDVELLIADYFDNLIRIEATPVGTPLENIDQSYYPVPNFYT-KVSLLKLLLT 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S M ++F + K + +L E+ G + IH N Q R ++ F G +++ Sbjct: 238 SNPEMSKVLVFVSTKSLADRVFEALDEEWGIKIQVIHSNKSQPFRFAAVNAFHAGESRVL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+ ARG+D+ +V HV NFD+P+ ENYIHRIGRTGR R G A + V +++ +++ Sbjct: 298 IATDIIARGIDVAEVTHVINFDMPSVPENYIHRIGRTGRVERKGIAISFVTEKEQEYLTE 357 Query: 360 IEKLIEKKV 368 IEKL+ V Sbjct: 358 IEKLMNYSV 366 >gi|256786437|ref|ZP_05524868.1| ATP-dependent RNA helicase [Streptomyces lividans TK24] gi|289770328|ref|ZP_06529706.1| ATP-dependent RNA helicase [Streptomyces lividans TK24] gi|289700527|gb|EFD67956.1| ATP-dependent RNA helicase [Streptomyces lividans TK24] Length = 728 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 190/346 (54%), Gaps = 5/346 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLGL VV + G P PIQ TIP L D+ G +TG+GKT SF LP L Sbjct: 51 FADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAT 110 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L GR PR +IL PTRELA QVAD + YG L + ++ GG Q LERG Sbjct: 111 LAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 170 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVL+ TPGR+ D NRG + N++I V+DEAD+M D+GF+P + + VP Q +L Sbjct: 171 VDVLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRML 230 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +E++ + + +L++P EV+ T+ H + K A + + S+ Sbjct: 231 FSATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVV---KPKDKAPVTAAIASR 287 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 IIF + + L G A+HG + Q +R + L++FK+G + ++VA+ Sbjct: 288 KGRT--IIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVAT 345 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 D+AARG+ + + V N D ++Y+HR GRT RAGR G +L Sbjct: 346 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSL 391 >gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis] Length = 764 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 208/363 (57%), Gaps = 1/363 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PT IQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 186 LSFQDMNLSRPLLKAITAMGFKQPTSIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 245 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV + + N+T L +GG+ ++Q L Sbjct: 246 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 305 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 306 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 365 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + L Sbjct: 366 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 425 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + ++F KK + L G V +HGN+ Q R++ L FK+ I ++ Sbjct: 426 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 485 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +++ K + Sbjct: 486 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 545 Query: 360 IEK 362 I K Sbjct: 546 IVK 548 >gi|120599366|ref|YP_963940.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|146292637|ref|YP_001183061.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|120559459|gb|ABM25386.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145564327|gb|ABP75262.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 449 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L +++ ++ G PT IQ +T+P+ L D+ ++TG+GKT +F+LP L Sbjct: 1 MQFTDFSLDQRLLQSLKHMGITAPTAIQEQTLPIALAGKDLMASSKTGSGKTLAFLLPAL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + R+ R PR LIL PTRELA QV N ++GG F Q K L Sbjct: 61 QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 + ++ TPGRI DH + L +N +E+L++DEADRMLD+GF P ++ I R Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHKRR 180 Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QTL+FSAT+ E+ ++ L+NP + ++ S I + F+ + + K ALL Sbjct: 181 QTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDH--KEALLT 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +LLQ + T K I+F + + L L QGF+ A+ G++ Q +R +I+ F G Sbjct: 239 RLLQDE-THKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQ 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++V +D+A+RGLD+ +V V NFD+P AE Y+HRIGRTGRAG G A +LV +D + Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357 Query: 357 IDAIEKLIEK 366 ++ + K Sbjct: 358 FKKVQIFLRK 367 >gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae] Length = 722 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 147/407 (36%), Positives = 227/407 (55%), Gaps = 23/407 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L LS V+ + GYVKP+PIQ TIP+ L D+ A TG+GKTA+F++P++ Sbjct: 202 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 261 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L A++ R ++L PTRELA QVAD ++ + + +T L +GG+ Q + L+ Sbjct: 262 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 321 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D++I TPGR +DH N ++++EILV+DEADRML+ GF + I L+P RQ Sbjct: 322 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 381 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM +++ + L+ P RI ++ P A + FV + K ALL L+ Sbjct: 382 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 441 Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D K ++F +K+ L + G SV +HG++ Q R+ ++ FK + Sbjct: 442 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 501 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353 +++ +DLA+RGLDIP + V N+D+P E Y+HR+GRT RAGR G++ T V + Sbjct: 502 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 561 Query: 354 -----IKHIDAIEKLIEKK-----VDWL-----NGDLSSLNPPLEKI 385 IK ++ + L + K VDW+ N + S+N +E I Sbjct: 562 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDI 608 >gi|283787538|ref|YP_003367403.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168] gi|282950992|emb|CBG90669.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168] Length = 421 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAT 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|222109707|ref|YP_002551971.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus TPSY] gi|221729151|gb|ACM31971.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY] Length = 469 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/392 (36%), Positives = 218/392 (55%), Gaps = 14/392 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L LSP+++ + GY + TPIQ ++P LQ D+ A TG+GKTA+F L M+ Sbjct: 16 FSSLPLSPEMLANLQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMVDR 75 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLER 121 L R + L+L PTRELA QVA + + N+ V + GG+P Q LE Sbjct: 76 LNP---RWFAVQGLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIASLEN 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGR++D RGKL + ++ LV+DEADRMLDMGF+ I+ + P RQTL Sbjct: 133 GAHIVVGTPGRVMDLMERGKLDIAKLKTLVLDEADRMLDMGFLADIETVVRQCPAERQTL 192 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D + +++ F++ P+ ++V + + + +K ++ ++L + Sbjct: 193 LFSATYPDGIAGLAQRFMRAPQMVKVAAQHGAGKIAQRWY---EVDAREKVDVVARML-A 248 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + I FCN K+ N+ +L+ QGFS A+ G ++QR R ++L F + ++VA Sbjct: 249 HFRPASSIAFCNTKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+DI D+ V N DV E +IHRIGRTGR G A LV+ +++ + IE Sbjct: 309 TDVAARGIDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIE 368 Query: 362 KLIEKKVDWLNGDL------SSLNPPLEKIDI 387 L + ++ D L PP+ I I Sbjct: 369 LLQGRACEFFPVDELTPTAGGELQPPMCTIQI 400 >gi|254430075|ref|ZP_05043782.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881] gi|196196244|gb|EDX91203.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881] Length = 428 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/412 (35%), Positives = 224/412 (54%), Gaps = 24/412 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L ++ + D+G+ TPIQ + + L D G AQTGTGKTA+F++ ++ Sbjct: 25 FHDFDLHLDLMHGIADSGFQYCTPIQAEVLTHTLAGADAIGRAQTGTGKTAAFLITVIND 84 Query: 63 LEKGRARVRM----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L K V+ PR LI+ PTRELA Q+ + + K+ +L V ++GG+ F Q ++ Sbjct: 85 LLKHPIDVQRFAGEPRALIVAPTRELAMQIEKDAKVLAKHTDLQVMSVVGGMNFNRQQER 144 Query: 119 LE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ + D+L+ TPGR+LD R L ++ +E LV+DEADRMLDMGFIP ++ I + P + Sbjct: 145 LQNKLIDILVATPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKS 204 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQT LFSAT D++ +S + Q+ + +E+ T +T+E T K LL Sbjct: 205 QYRQTQLFSATFNDDVMNLSRRWTQDAEVVEIEPTQVTTDTVEQKVYIT--NTDDKFKLL 262 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L+ + M I+F N++ + L K+G V I G++ Q R K L F+ G Sbjct: 263 YNLITGMN-MDKVIVFANRRDITRRVSDRLHKKGLKVSLISGDVPQTQRSKTLERFRAGD 321 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +Q+++A+D+A RG+ I V HV N+++P E+Y+HRIGRTGRAG G + + ++D Sbjct: 322 LQVLIATDVAGRGIHIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAF 381 Query: 356 HIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFD 407 + +E I K L PP + + A K P K+ G D Sbjct: 382 LLPELENAIGMK-------LECEYPPADLL-------AEKETAAPMKAPGHD 419 >gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB] Length = 755 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 147/407 (36%), Positives = 227/407 (55%), Gaps = 23/407 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L LS V+ + GYVKP+PIQ TIP+ L D+ A TG+GKTA+F++P++ Sbjct: 235 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 294 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L A++ R ++L PTRELA QVAD ++ + + +T L +GG+ Q + L+ Sbjct: 295 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 354 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D++I TPGR +DH N ++++EILV+DEADRML+ GF + I L+P RQ Sbjct: 355 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 414 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM +++ + L+ P RI ++ P A + FV + K ALL L+ Sbjct: 415 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 474 Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D K ++F +K+ L + G SV +HG++ Q R+ ++ FK + Sbjct: 475 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 534 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353 +++ +DLA+RGLDIP + V N+D+P E Y+HR+GRT RAGR G++ T V + Sbjct: 535 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 594 Query: 354 -----IKHIDAIEKLIEKK-----VDWL-----NGDLSSLNPPLEKI 385 IK ++ + L + K VDW+ N + S+N +E I Sbjct: 595 IVRAAIKSVEENKSLTQGKALGXNVDWVQIEETNKLVESMNDTIEDI 641 >gi|313771958|gb|EFS37924.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1] Length = 564 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 55 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114 Query: 63 L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QV+ + V + GG+ +E+Q Sbjct: 115 ITLPGDEGWGELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLAVYGGVGYESQ 174 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ P Sbjct: 175 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 234 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232 +RQT+LFSATM + ++ + L+ P + +T ++ +T + + A K Sbjct: 235 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 291 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ ++LQ+ D K IIFC K+ L L+ +GF AIHG++ Q +R K L F+ Sbjct: 292 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDARGFKPRAIHGDLTQVAREKALKKFR 350 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV Sbjct: 351 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 410 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 D+ KLI K LN +LS P+E + H Sbjct: 411 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 438 >gi|260800277|ref|XP_002595060.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae] gi|229280302|gb|EEN51071.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae] Length = 875 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 133/344 (38%), Positives = 198/344 (57%), Gaps = 11/344 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA G +++ + + Y +PTPIQ + IP+ L D+ GIA+TG+GKTA+FV PML Sbjct: 238 FAHFGFDEQLLHQIRKSEYSQPTPIQAQGIPVALSGRDIIGIAKTGSGKTAAFVWPMLVH 297 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P LI PTREL+ Q+ +++GK Y L+V GG Q Sbjct: 298 IMDQKELEPGDG----PIGLICAPTRELSQQIYAEAKRFGKCYGLSVVAAYGGGSMWEQT 353 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 K L+ GA++++CTPGR++D + + + LV DEADRM DMGF P +++I + V Sbjct: 354 KALQLGAEIVVCTPGRLIDLVKKKATNLQRVTYLVFDEADRMFDMGFEPQVRSIANHVRP 413 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTLLFSAT ++++ + L +P ++ E ++ V + K L Sbjct: 414 DRQTLLFSATFKKRIERLCRDILMDPIKVVQGDLGEANEDVQQ-IVEIFPAGPPKWQWLT 472 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 + L ++ + +IF +K N L +L+ Q F +HG++DQ R K++S+FK+ TI Sbjct: 473 RRLVEFTSVGSVLIFVTKKANSEELASNLKAQDFEAGLLHGDMDQSERNKVISDFKKKTI 532 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 +MVA+D+AARGLDIP + V N+DV + + HRIGRTGRAG Sbjct: 533 PVMVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAG 576 >gi|257466549|ref|ZP_05630860.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC 25563] gi|315917704|ref|ZP_07913944.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC 25563] gi|313691579|gb|EFS28414.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC 25563] Length = 528 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 215/368 (58%), Gaps = 8/368 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60 +F +LG+ K++ A+ GY PTPIQ TIP +L D+ G AQTGTGKTA+F LP+L Sbjct: 9 EFRELGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPIL 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +E + ++L PTRELA QVA+ G + + + + GG + Q K L Sbjct: 69 ENIEHQDK----IQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLR 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+++ TPGR++D R L + +++ ++DEAD ML+MGF+ ++ I ++ Sbjct: 125 NGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM +E+ KV++ +++ + + V T + + + + K AL + + Sbjct: 185 LFFSATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEV-NERDKFEALCRIIDL 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D GI+FC K +V + L +G+ +HG+I Q R L FK I ++V Sbjct: 244 AEDFY--GIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P AE+Y+HRIGRTGRAG+ G A T + ++ + + I Sbjct: 302 ATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361 Query: 361 EKLIEKKV 368 +K+++ ++ Sbjct: 362 QKIVKTEI 369 >gi|168212498|ref|ZP_02638123.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str. F4969] gi|170715966|gb|EDT28148.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str. F4969] Length = 478 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 220/364 (60%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ A+ + GY P+ +Q +IP +L+ D+ +QTG+GKTASF +P+ Sbjct: 1 MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPLC 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK + + L+L PTRELA QV D G+ + A + G PF Q ++L+ Sbjct: 61 ---EKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR+ DH RG L ++ + +VIDEAD+ML MGFI I++I + + T Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT + E++++ E +++NP +EV + + IE + + +K AL + L Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYA 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+FCN + V ++ L+ +G + +HG+++Q+ R++++ NF++ +++V Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ + + V N++VP E+Y+HRIGRTGRAGR GKA T V + K+++ + Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354 Query: 361 EKLI 364 E+ I Sbjct: 355 EEYI 358 >gi|195498992|ref|XP_002096759.1| GE25850 [Drosophila yakuba] gi|194182860|gb|EDW96471.1| GE25850 [Drosophila yakuba] Length = 688 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 131/352 (37%), Positives = 203/352 (57%), Gaps = 14/352 (3%) Query: 10 PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE----- 64 P ++ + G+ KP+PIQ + P++LQ HD+ GIAQTGTGKT +F+LP + E Sbjct: 277 PDLLGEITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 336 Query: 65 ---KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +G A V L+L PTRELA Q+ +KY N+ + GG Q LER Sbjct: 337 RGTRGGANV-----LVLAPTRELALQIEMEVKKYSFR-NMKAVCVYGGGDRRMQISDLER 390 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA+++ICTPGR+ D + ++ I LV+DEADRMLDMGF P I+ + + RQT+ Sbjct: 391 GAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTI 450 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 + SAT ++++++++++NP ++ V + A + +K + ++ +++ Sbjct: 451 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDREKFSTIKSFVRN 510 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 IIFC +K +L L GF IHGN DQ R + +++ K G + ++VA Sbjct: 511 MSNTDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQSDREQAIADIKSGAVHILVA 570 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +D+A+RGLDI D+ HV N+D P E Y+HR+GRTGRAGR G + + + +ED Sbjct: 571 TDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITRED 622 >gi|145632667|ref|ZP_01788401.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655] gi|229846508|ref|ZP_04466616.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1] gi|144986862|gb|EDJ93414.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655] gi|229810601|gb|EEP46319.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1] Length = 439 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 135/383 (35%), Positives = 212/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + P LIL PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + GI+F ++++ + +L K+G + G + Q R + K G + ++V Sbjct: 245 TEKVTR-GIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|118082784|ref|XP_416260.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Gallus gallus] Length = 655 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 214/378 (56%), Gaps = 19/378 (5%) Query: 12 VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65 V+ A++D + +PTPIQ + PL L D+ GIAQTG+GKT +++LP + LE+ Sbjct: 101 VMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 160 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 G P L+L PTRELA QV + YGK L + GG P Q + LERG ++ Sbjct: 161 GDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEI 216 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 I TPGR++D GK + LV+DEADRMLDMGF P I+ I + RQTL++SA Sbjct: 217 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 276 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQ 240 T E+++++E+FLQ+ +I V +A + ++ C + + K L+++++ Sbjct: 277 TWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEEIMA 334 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ IIF K+ +L + + G+ IHG+ Q R +L+ F+ G +++ Sbjct: 335 EKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILI 392 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLD+ DV V N+D PN +E+Y+HRIGRT R+ G A+T ++K + Sbjct: 393 ATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 452 Query: 361 EKLIEKKVDWLNGDLSSL 378 K++E+ +N L L Sbjct: 453 IKVLEEANQAINPKLMQL 470 >gi|257463152|ref|ZP_05627553.1| ATP-dependent RNA helicase [Fusobacterium sp. D12] gi|317060745|ref|ZP_07925230.1| ATP-dependent RNA helicase [Fusobacterium sp. D12] gi|313686421|gb|EFS23256.1| ATP-dependent RNA helicase [Fusobacterium sp. D12] Length = 528 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 215/368 (58%), Gaps = 8/368 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60 +F DLG+ K++ A+ GY PTPIQ TIP +L D+ G AQTGTGKTA+F LP+L Sbjct: 9 EFRDLGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPIL 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +E + ++L PTRELA QVA+ G + + + + GG + Q K L Sbjct: 69 ENIEHQDK----IQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLR 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+++ TPGR++D R L + +++ ++DEAD ML+MGF+ ++ I ++ Sbjct: 125 TGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM +E+ KV++ +++ + + V T + + + + K AL + + Sbjct: 185 LFFSATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEV-NERDKFEALCRIIDL 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D GI+FC K +V + L +G+ +HG+I Q R L FK I ++V Sbjct: 244 AEDFY--GIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKARKINILV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P AE+Y+HRIGRTGRAG+ G A T + ++ + + I Sbjct: 302 ATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361 Query: 361 EKLIEKKV 368 +++++ ++ Sbjct: 362 QRIVKTEI 369 >gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121] gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121] Length = 461 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 208/371 (56%), Gaps = 7/371 (1%) Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64 D+ L K+ + D G+ TPIQ +T+P +L +D+ AQTG+GKT +F + ML Sbjct: 9 DIQLPTKLTALLSDLGFETFTPIQAQTLPSILSDNDILAQAQTGSGKTLAFAIGMLM--- 65 Query: 65 KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGA 123 K R + L++ PTRELA QV K + N+ V L GG+PF Q LE GA Sbjct: 66 KINPRYFGVQGLVMCPTRELADQVCKEIRKTARFLENIKVLSLCGGMPFGPQIGSLEHGA 125 Query: 124 DVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLF 183 +++ TPGR+L+H +G L ++++ LV+DEADRMLDMGF+ I+ + P RQTL+F Sbjct: 126 HIVVGTPGRLLEHVRKGTLRLDSLNTLVLDEADRMLDMGFVDSIRTLVESTPKKRQTLMF 185 Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243 SAT + + K+S F NPK I+V + I+ FV + K L ++ Q+ Sbjct: 186 SATYPETIGKISAEFQHNPKTIKVEATQESKPDIKQFFVKS--NKDDKPYALMSAVRYQN 243 Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 + I+FCN K + L S AIHG+++QR R ++L F + +++VA+D Sbjct: 244 P-EQAIVFCNTKIECQTIADFLVDHKISAKAIHGDLEQRDRDQVLVQFSNASCRILVATD 302 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 +AARG+D+ +V V N+D + + HRIGRTGRAG G A LV +D + IE Sbjct: 303 VAARGIDVKEVDTVINYDTTRDIDVHTHRIGRTGRAGNKGVAINLVTDKDTYKVKDIEDR 362 Query: 364 IEKKVDWLNGD 374 E + D+L D Sbjct: 363 FEIQADYLELD 373 >gi|323453625|gb|EGB09496.1| hypothetical protein AURANDRAFT_10388 [Aureococcus anophagefferens] Length = 589 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 212/379 (55%), Gaps = 32/379 (8%) Query: 4 ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63 ADLG ++ A+ DAGY +P+PIQ + IP+ L+ D+ G+A+TG+GKTA+F +PM+ + Sbjct: 181 ADLG--EPLLMAIRDAGYKEPSPIQRQAIPVGLELRDIIGVAETGSGKTAAFCIPMIRYI 238 Query: 64 EK-GRARVRM-----PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 K AR+ P L++ PTRELA Q+A +K + ++ V ++GG+ E Q Sbjct: 239 SKLPAARIASLADDGPLALVMAPTRELATQIAGECKKLTAHMDMNVTTVVGGMSIEDQAF 298 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV--- 174 L G ++++ TPGRI D + L++N +V+DEADRM+DMGF P + +I + Sbjct: 299 VLREGVEIIVGTPGRIQDCLDTQYLVLNQANYVVLDEADRMIDMGFEPQVHSILEEMGGL 358 Query: 175 --------------------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTA 214 R T +FSATM ++K+++ FL++P + + S Sbjct: 359 LLSEDDIEMEQQRLAVQRGEACYRITAMFSATMPSAVEKLAKKFLRHPAIVCIGDEDSGK 418 Query: 215 ETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCA 274 V A+ +KK A++ +L+ + ++FCN+KK L L G Sbjct: 419 NKRIAQHVLYIAEAAKKNAVV-DILRKKKAQDKYLVFCNEKKGCDALAKVLSTAGLRSSV 477 Query: 275 IHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIG 334 +HG Q R L+ +K G++ ++VA+D+A RGLDIPDV HV N+D+P + ENY HRIG Sbjct: 478 LHGGKTQEHRDATLAAYKAGSVTVLVATDVAGRGLDIPDVAHVVNYDMPLKIENYSHRIG 537 Query: 335 RTGRAGRHGKAFTLVAKED 353 RTGRAG+ G A TL+ D Sbjct: 538 RTGRAGKDGVATTLLTDSD 556 >gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae] Length = 449 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 134/353 (37%), Positives = 200/353 (56%), Gaps = 4/353 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ D GY +PT IQ+ TIP ++ D+ G + TGTGKTA+++LP++ Sbjct: 13 FSELELDQSLLNALDDKGYERPTAIQLATIPAAMEGRDILGSSPTGTGKTAAYLLPVIQH 72 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R R PR LIL PTRELA QVA+ + K +L +A + GG+ + + Sbjct: 73 LLDFPRKRSGPPRILILTPTRELAMQVAEQAKALAKYTHLDIATITGGVSYVNHAEIFSE 132 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + IE L++DEADRMLDMGF I+ I + +QT+ Sbjct: 133 NQDIVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFANDIETIAGETRWRKQTM 192 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ E + +E L NP I+ + + I+ + K ALL LL+ Sbjct: 193 LFSATLAGEAIHDFAERLLNNPHEIDADPSRRERKKIQQYYYRA-DNLEHKTALLCHLLK 251 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D K+ IIF +++ L L++ + G + Q R + + G I ++V Sbjct: 252 QPDASKS-IIFVRKRERAHELVQWLQQANIKTWLLEGEMVQAKRTEAVKRLNSGQINVLV 310 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+A+RGLDI D+ HVFNFD+P A+ Y+HRIGRT RAGR G A +LV D Sbjct: 311 ATDVASRGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGIAISLVEAHD 363 >gi|329297879|ref|ZP_08255215.1| ATP-dependent RNA helicase RhlB [Plautia stali symbiont] Length = 431 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 147/391 (37%), Positives = 223/391 (57%), Gaps = 17/391 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+VV A+ + + TPIQ +P L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVVEALDEKDFHNCTPIQALALPFALSGRDVAGQAQTGTGKTLAFLTSTFHY 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L +GR +V PR LI+ PTRELA Q+ + E + L + L GG +E Q K Sbjct: 71 LLSHPAAEGR-QVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYEKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L G D+L+ T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLADGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA 189 Query: 178 RQ--TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCAL 234 Q ++LFSAT++ +++++ + N + +EV T I E F Y +K L Sbjct: 190 TQRLSMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRL 246 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 LQ LL+ ++ I+F N K ++ L G V ++G++ Q+ R++IL + +G Sbjct: 247 LQTLLE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLNGDVAQKKRLRILDDVTKG 305 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 306 DVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYA 365 Query: 355 KHIDAIEKLIEKK--VDWLNGD--LSSLNPP 381 ++ AIE+ I V N D LS L PP Sbjct: 366 LNLPAIEEYIGHGIPVSKYNSDALLSDLPPP 396 >gi|254482117|ref|ZP_05095359.1| DbpA RNA binding domain family protein [marine gamma proteobacterium HTCC2148] gi|214037807|gb|EEB78472.1| DbpA RNA binding domain family protein [marine gamma proteobacterium HTCC2148] Length = 459 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/385 (36%), Positives = 221/385 (57%), Gaps = 13/385 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L + ++ GY T IQ ++PL + D+ A+TG+GKTA+F LP+L Sbjct: 6 FSSLPLPKDQLDNLISLGYASMTGIQAASLPLAFKGKDLIAQAKTGSGKTAAFSLPLL-- 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 +K R + L+L PTRELA QV+ + + N+ V L GG Q LE Sbjct: 64 -DKLNPRDFGTQALVLCPTRELATQVSGEIRRLARYRQNIKVVTLCGGQSIGPQIGSLEH 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 GA +++ TPGRI DH + L + ++ LV+DEADRML+MGF+ I +I P RQTL Sbjct: 123 GAHIVVGTPGRISDHLRKKTLNLTRVDTLVLDEADRMLEMGFVEDISSIIEQTPAARQTL 182 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT D+++ +S F + P+RI V T + + + FV Q S + L LL + Sbjct: 183 LFSATYPDDIEALSARFQKQPERISVETMHNDQQIDQQFFVC---QKSARLDGLVTLL-N 238 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + ++FCN K+ V ++ L++ G A+HG+++QR R ++L F++ + ++VA Sbjct: 239 HFAPQTAVVFCNTKQLVRDVTAHLDESGIRALALHGDMEQRDRDQVLIQFRQQSCSVLVA 298 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI D+ V NF++P E Y+HR+GRTGRAG+ G A +L A + ++ I Sbjct: 299 TDVAARGLDIDDLPVVVNFELPRETEVYVHRVGRTGRAGKAGLALSLFADSEQYKLEKIR 358 Query: 362 KLIE-----KKVDWLNGDLSSLNPP 381 +L++ K +D ++ + PP Sbjct: 359 QLLQQEPETKPIDSISVRGERMPPP 383 >gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus] gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus] Length = 761 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 214/364 (58%), Gaps = 3/364 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 184 LTFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + ++T L +GG+ ++Q L Sbjct: 244 ERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEADRMLD F ++ I + RQ Sbjct: 304 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 363 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + + A++ L Sbjct: 364 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 423 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L T + ++F KK + L G V +HGN+ Q R++ L FK+ I + Sbjct: 424 LMRTFT-DHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDI 482 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 483 LVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 542 Query: 359 AIEK 362 I K Sbjct: 543 EIVK 546 >gi|110803350|ref|YP_698172.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101] gi|110683851|gb|ABG87221.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101] Length = 478 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 220/364 (60%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ A+ + GY P+ +Q +IP +L+ D+ +QTG+GKTASF +P Sbjct: 1 MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK + + L+L PTRELA QV D G+ + A + G PF Q ++L+ Sbjct: 59 -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR+ DH RG L ++ + +VIDEAD+ML MGFI I++I + + T Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT + E++++ E +++NP +EV + + IE + + +K AL + L Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYA 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+FCN + V ++ L+ +G + +HG+++Q+ R++++ NF++ +++V Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ + + V N++VP E+Y+HRIGRTGRAGR GKA T V + K+++ + Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354 Query: 361 EKLI 364 E+ I Sbjct: 355 EEYI 358 >gi|127512383|ref|YP_001093580.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126637678|gb|ABO23321.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 441 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 211/364 (57%), Gaps = 8/364 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ L L + + GY + TPIQ K IP +L D+ A+TG+GKTA+F LP+L Sbjct: 25 DFSQLNLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGAKTGSGKTAAFALPLLQ 84 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNY--NLTVALLIGGIPFEAQNKK 118 L RA L+L PTRELA QVAD+F YG V + GG+ +Q Sbjct: 85 KLVGQRAGGGNHVGALVLVPTRELAQQVADSFISYGAELAPRAKVIAVFGGVSVNSQMLA 144 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L GAD+L+ TPGR+LD + ++ ++ LV+DEADRML++GF + I +P + Sbjct: 145 LRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQLPDQK 204 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTLLFSAT +E+ ++ L +P I++ S A+ + + S K ALL +L Sbjct: 205 QTLLFSATFPEEVLSLTAKLLTDPVEIQMQEAQS-ADIEQRVYTVNR---SNKTALLAEL 260 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ + + ++F + K++ +L LEK+G S HG+ Q +R ++L FK G I + Sbjct: 261 IKVRQ-WRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEITV 319 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+AARG+DI + V NF++P +Y+HRIGR+GRAG G+A +L++ ++ H Sbjct: 320 LIATDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHFK 379 Query: 359 AIEK 362 IEK Sbjct: 380 VIEK 383 >gi|168216267|ref|ZP_02641892.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239] gi|182381904|gb|EDT79383.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239] Length = 478 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 220/364 (60%), Gaps = 6/364 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS ++ A+ + GY P+ +Q +IP +L+ D+ +QTG+GKTASF +P Sbjct: 1 MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + EK + + L+L PTRELA QV D G+ + A + G PF Q ++L+ Sbjct: 59 -VCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 + +++ TPGR+ DH RG L ++ + +VIDEAD+ML MGFI I++I + + T Sbjct: 118 QRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT + E++++ E +++NP +EV + + IE + + +K AL + L Sbjct: 178 ALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEK-NKGKALWKCLYA 236 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ I+FCN + V ++ L+ +G + +HG+++Q+ R++++ NF++ +++V Sbjct: 237 YHP--ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 +D+AARG+ + + V N++VP E+Y+HRIGRTGRAGR GKA T V + K+++ + Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354 Query: 361 EKLI 364 E+ I Sbjct: 355 EEYI 358 >gi|121715524|ref|XP_001275371.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1] gi|134034064|sp|A1C6C4|DBP2_ASPCL RecName: Full=ATP-dependent RNA helicase dbp2 gi|119403528|gb|EAW13945.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1] Length = 549 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ +PT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 127 FDEAGFPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 187 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 242 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 243 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 302 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E+++++ +FL + ++ + + +A V + + K+ +++ Sbjct: 303 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 362 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + N I IF K+ + L + G+ +IHG+ Q+ R +L+ FK G Sbjct: 363 HLEKIMEDRSNKILIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKAGK 422 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N+D PN +E+YIHRIGRTGRAG G A T ++ K Sbjct: 423 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSK 482 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 483 QARDLVTILTEAK 495 >gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group] gi|113649278|dbj|BAF29790.1| Os12g0481100 [Oryza sativa Japonica Group] Length = 832 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/366 (39%), Positives = 206/366 (56%), Gaps = 11/366 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS ++ A GY KPTPIQ IPL L D+CG A TG+GKTA+F LP+L Sbjct: 226 FLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 285 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RV R LIL PTRELAAQV EK + ++ L++GG+ + Q L Sbjct: 286 LLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSM 345 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGRI+DH N + + ++ IL++DEADR+L++GF IQ + + P RQT+ Sbjct: 346 PDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTM 405 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQ 237 LFSATMT+E+ ++ L P R+E + P++ E + A A +++ LL Sbjct: 406 LFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREA--NQEAVLLAL 463 Query: 238 LLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ T K+ IIF K + L G +HGN+ Q R++ L FK+ + Sbjct: 464 CLK---TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEV 520 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++A+D+AARG+DI V V NF P A Y+HR+GRT RAGR G A T V +D Sbjct: 521 DFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSL 580 Query: 357 IDAIEK 362 + AI K Sbjct: 581 LKAIAK 586 >gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like [Saccoglossus kowalevskii] Length = 694 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 153/452 (33%), Positives = 244/452 (53%), Gaps = 31/452 (6%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+D+ L + + ++ Y +PTP+Q +P++ + D+ AQTG+GKTA+F+LP+L+ Sbjct: 231 EFSDIDLGEIIQSNIKNSTYARPTPVQKYALPIIRLKRDLMACAQTGSGKTAAFLLPILS 290 Query: 62 -ILEKGRARV---------RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP 111 I E G ++ P L+L PTRELA+Q+ D K+ ++ ++ GG Sbjct: 291 QIYENGPGKIPESRYARRKHFPLGLVLAPTRELASQIYDEARKFSYRSHVRPCVVYGGAD 350 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 Q ++L+RG +L+ TPGR++D RGK+ ++ I+ +V+DEADRMLDMGF P I+ I Sbjct: 351 VGGQMRELDRGCHLLVATPGRLVDMMERGKIGLDQIKWVVLDEADRMLDMGFEPQIRRIV 410 Query: 172 S--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQ 227 +P T RQ L+FSAT E+Q ++ +FL N + V ST+ I V + Sbjct: 411 EQDTMPKTGERQMLMFSATFPKEIQILARDFLDNYIFLAVGRVGSTSVNITQKVV--WVD 468 Query: 228 YSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKI 287 + K + L LL + + ++F KK +L L + G +IHG+ QR R + Sbjct: 469 ENDKRSFLLDLLSATGSDSLTLVFVETKKGADSLEDFLYRDGHRATSIHGDRSQREREEA 528 Query: 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFT 347 L +F+ G ++VA+ +AARGLDIP+V HV NFD+P+ E Y+HRIGRTGR G G A + Sbjct: 529 LRSFRTGQTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGNLGLATS 588 Query: 348 LVAKEDIKHI-DAIEKLIEKKVD---WLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403 ++ + D +E ++E K + W L S+ + Q R+ P + Sbjct: 589 FFNDKNRNVVRDLLELIMETKQEVPSW----LESM-----AYEAKQSGGGRRGAPRNRYY 639 Query: 404 TGFDRR--KKNYSSQKSHIPLKESEKISKLQQ 433 GF R ++ + S P+ + + QQ Sbjct: 640 GGFGSRDYRQGNRGRGSGTPVYGNAAFTGYQQ 671 >gi|238897336|ref|YP_002923013.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259585614|sp|C4K8M8|RHLB_HAMD5 RecName: Full=ATP-dependent RNA helicase rhlB gi|229465091|gb|ACQ66865.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 422 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 139/365 (38%), Positives = 210/365 (57%), Gaps = 9/365 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P V+ A+ + G+ TPIQ + P+ L DV AQTGTGKT +F+ + Sbjct: 11 FSDFALHPLVIKAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFNY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A + PR LI+ PTRELA Q+ + E + +L + L GG ++ Q K Sbjct: 71 LLTNAADETRQCEQPRALIMVPTRELAIQIYTDAETLSQFTSLKMGLAYGGDGYDKQLKI 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 LE G D+LI TPGRI+D+ + + +N ++++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTPGRIIDYAKQNFIHLNALQVIVLDEADRMYDLGFIKDIRWLFRRMPPAE 190 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 R +LFSAT++ ++++S + +P+ IEV I+ Y K LLQ Sbjct: 191 KRLNMLFSATLSYRVRELSFEQMNHPEYIEVEPLQKIGSQIQEELF--YPSNEDKMRLLQ 248 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ ++ IIF N K+ ++ L G V + G++ QR R++IL +F +G + Sbjct: 249 TLIE-EEWPDRCIIFANTKQRCEDIWGHLVADGHRVGLLTGDVAQRKRIQILDDFSKGYL 307 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL IP V HVFN+D+P E+YIHRIGRTGRAG G + +L + H Sbjct: 308 DILVATDVAARGLHIPKVTHVFNYDLPENVEDYIHRIGRTGRAGEKGYSISLACEAFASH 367 Query: 357 IDAIE 361 + IE Sbjct: 368 LSTIE 372 >gi|257457389|ref|ZP_05622560.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580] gi|257445311|gb|EEV20383.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580] Length = 646 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/411 (35%), Positives = 225/411 (54%), Gaps = 33/411 (8%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 + F DLGL V+ AV G+ +PTPIQ+ IP +L +V A+TGTGKTA++ LP+ Sbjct: 18 ISFRDLGLDESVLNAVAAKGFEEPTPIQVLAIPRLLNGDANVIAKARTGTGKTAAYGLPL 77 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + L + R + PR L+L PTRELA QVA E + + + + + GG Q + L Sbjct: 78 VQELREPREK---PRALVLVPTRELALQVASEIESFKEGTHPRITTVYGGASIVEQLRNL 134 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG +++ TPGR++DH RG L +++IE ++DEAD ML+MGFI I+ I + Sbjct: 135 KRGCEIVAGTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSR 194 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM ++ K++ +F+ + +E E F + K AL++ + Sbjct: 195 VLMFSATMPKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREE-DKSEALVRLI- 252 Query: 240 QSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 DT +N G++FC K + + L+++ + A+HG+I Q R KILS F+ G + Sbjct: 253 ---DTAENFYGLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTR 309 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARG+DI + HV N+ +P Y HRIGRTGRAG G A + + + + I Sbjct: 310 ILVATDVAARGIDIEGITHVVNYSIPYDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRI 369 Query: 358 D----------------AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH 392 D +IEK++ +K D L DL ++D Q H Sbjct: 370 DYLRRHARGELLEGKIPSIEKVLAQKQDRLFSDLR------RQLDTVQAEH 414 >gi|154504732|ref|ZP_02041470.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149] gi|153794906|gb|EDN77326.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149] Length = 550 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 214/360 (59%), Gaps = 7/360 (1%) Query: 10 PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR 69 P+++ AV G+ + +PIQ K IP+++ DV G AQTGTGKTA+F +P+L EK + Sbjct: 36 PEILKAVKHMGFEEASPIQSKAIPVIMSGKDVIGQAQTGTGKTAAFGIPLL---EKIDPK 92 Query: 70 VRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLERGADVLIC 128 + + ++L PTRELA QVA+ K + + V + GG Q + L+ G ++I Sbjct: 93 NKKLQAIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLVIG 152 Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188 TPGR++DH R + M+++ +V+DEAD ML+MGF I+ I +P QT+LFSATM Sbjct: 153 TPGRVMDHMRRKTMKMDHVHTIVLDEADEMLNMGFREDIETILEGIPQEHQTVLFSATMP 212 Query: 189 DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248 + ++++ F N + ++V T IE + + K +L +LL T K Sbjct: 213 KAILEITKQFQTNAELVKVTKKELTVPNIEQFYYEVKPK--NKEEVLSRLLDIY-TPKLS 269 Query: 249 IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308 ++FCN KK V L + L +G+ +HG++ Q R +++ F+ G ++V +D+AARG Sbjct: 270 VVFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVCTDVAARG 329 Query: 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 +D+ DV VFN+D+P E Y+HRIGRTGRAGR G++F+ V+ ++ + I++ + K+ Sbjct: 330 IDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGREVYKLKEIQRYCKTKI 389 >gi|152972774|ref|YP_001337920.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262040904|ref|ZP_06014130.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012120|ref|ZP_08307282.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. MS 92-3] gi|189040033|sp|A6TGG9|RHLB_KLEP7 RecName: Full=ATP-dependent RNA helicase rhlB gi|150957623|gb|ABR79653.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259041793|gb|EEW42838.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533935|gb|EGF60594.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. MS 92-3] Length = 421 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 212/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P V+ A+ G+ TPIQ +PL L+ DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAT 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ I+F N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLLE-EEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|261340877|ref|ZP_05968735.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC 35316] gi|288317308|gb|EFC56246.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC 35316] Length = 442 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 144/388 (37%), Positives = 222/388 (57%), Gaps = 8/388 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ G+ +PT IQ IP L+ DV G A TGTGKTA+++LP+L Sbjct: 6 FSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD+ + N +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E L++DEADRMLDMGF I++I + QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRNQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVN-TPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LFSAT+ D ++ +E L++P +EV+ TPS+ H + K LL+QLL Sbjct: 186 LFSATLEGDAIKDFAERLLEDP--VEVSATPSTRERKKIHQWYYRADNLEHKIELLKQLL 243 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + +D + I+F +++ V L L G + C + G + Q R + + +G + ++ Sbjct: 244 KQEDATRT-IVFVRKRERVHELAEILRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVNVL 302 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DIPDV HV NFD+P + Y+HRIGRTGRAGR G A +LV D + Sbjct: 303 VATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDHLLLQK 362 Query: 360 IEKLIEK--KVDWLNGDLSSLNPPLEKI 385 I + +++ K ++G + P EK+ Sbjct: 363 IGRYVDEPLKSRVIDGLRPTTRAPSEKM 390 >gi|153000172|ref|YP_001365853.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|160874799|ref|YP_001554115.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|151364790|gb|ABS07790.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|160860321|gb|ABX48855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|315267037|gb|ADT93890.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 451 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 208/370 (56%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L +++ ++ G +PT IQ + +P+ L D+ ++TG+GKT +F+LP L Sbjct: 1 MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + R+ R PR LIL PTRELA QV N ++GG F Q K L Sbjct: 61 QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 + ++ TPGRI DH + L +N +E+LV+DEADRMLD+GF P ++ I R Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180 Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QTL+FSAT+ DE+ ++ L+NP + + S I + F+ + + K ALL Sbjct: 181 QTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDH--KEALLA 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +LL+ + T K IIF + + L L QGF+ A+ G++ Q +R +I+ F G Sbjct: 239 RLLKDE-THKQVIIFTATRPDTERLAAKLTAQGFATAALSGDLKQAARNQIMDQFARGQQ 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++V +D+A+RGLD+ +V V NFD+P AE Y+HRIGRTGRAG G A +LV +D + Sbjct: 298 QVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357 Query: 357 IDAIEKLIEK 366 ++ + K Sbjct: 358 FKKVQVFLRK 367 >gi|163803377|ref|ZP_02197253.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4] gi|159172839|gb|EDP57681.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4] Length = 407 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 211/369 (57%), Gaps = 7/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+L L ++ A+ GY +PT +Q + IP L D+ A TGTGKTA+FVLP L Sbjct: 5 FAELDLDQNLLEAIEQMGYERPTNVQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQY 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA QVAD KN L + + GG+ ++ L Sbjct: 65 LQDFPRRKPGPARILILTPTRELAMQVADQARAMAKNTKLNIFTITGGVQYQEHADILAT 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+ ++ + + IE L++DEADRMLDMGF P + +++ + +QTL Sbjct: 125 TQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTL 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCF-VATYAQYSKKCALLQQLL 239 LFSAT+ + ++ + + L P +I+ +P + I + A A++ K ALL+ ++ Sbjct: 185 LFSATLEGKGVEGFTADLLNEPAKIDAKSPLRERKKIAQWYHRADDAEH--KLALLKHII 242 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q + I+F ++ + L LE I G + Q R +S F+EG + ++ Sbjct: 243 TEQ--AERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGAVNVL 300 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A ++V D ++ Sbjct: 301 LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMLER 360 Query: 360 IEKLIEKKV 368 + + +++ + Sbjct: 361 VARYVKEDI 369 >gi|319788359|ref|YP_004147834.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1] gi|317466871|gb|ADV28603.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 579 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 221/373 (59%), Gaps = 10/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---- 58 F+ L P+++ + AG+ + TPIQ T+P+ L+ DV G AQTGTGKT +F++ Sbjct: 12 FSSFDLHPELLAGLESAGFTRCTPIQALTLPVALRGGDVAGQAQTGTGKTLAFLVAVMNR 71 Query: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 +LT + PR LIL PTRELA Q+ + K+G L AL+ GG+ ++ Q + Sbjct: 72 LLTRPALAERKPEDPRALILAPTRELAIQIHKDAVKFGSQLGLRFALVYGGVDYDKQREL 131 Query: 119 LERGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPF- 176 L++G DV+I TPGR++D+ + K++ ++ E+ V+DEADRM D+GFI I+ + +P Sbjct: 132 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEMCVLDEADRMFDLGFIKDIRFLLRRMPVR 191 Query: 177 -TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 RQTLLFSAT++ + +++ + P+++ V T + TA + Y ++ L Sbjct: 192 TERQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRL---YYPSDEEKLPL 248 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L S+ ++F N K V + +LEK G+ V + G++ Q+ R +L+ F++G Sbjct: 249 LLGLLSRSEGARTMVFVNTKVFVERVARALEKAGYRVGVLSGDVPQKKRETLLNRFQKGQ 308 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 ++++VA+D+AARGL I + +V+N+D+P AE+Y+HRIGRT R G G A + + Sbjct: 309 LEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAM 368 Query: 356 HIDAIEKLIEKKV 368 + IE IE+K+ Sbjct: 369 SLPDIEAYIEQKI 381 >gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio] gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio] Length = 776 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 213/365 (58%), Gaps = 5/365 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ +P+ L D+C A TGTGKTA+F+LP+L Sbjct: 201 LTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVL 260 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L ++ R L+L PTREL QV + + ++ L +GG+ ++Q L Sbjct: 261 ERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALR 320 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 G DVLI TPGR++DH N ++ IEIL++DEADRMLD F ++ I + + RQ Sbjct: 321 AGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQ 380 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238 T+LFSATM++E++ ++ L+ P RI VN+ + A + FV + + A++ L Sbjct: 381 TMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAAL 440 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L T ++ ++ Q K + H L G V +HGN+ Q R++ L FK+ I Sbjct: 441 LTR--TFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQID 498 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAG+ G++ +LV + + K + Sbjct: 499 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKML 558 Query: 358 DAIEK 362 I K Sbjct: 559 KEIVK 563 >gi|325970668|ref|YP_004246859.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy] gi|324025906|gb|ADY12665.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy] Length = 546 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 219/372 (58%), Gaps = 7/372 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L LS +V+ + AG+ T +Q K +P+ L DV ++TG+GKTA +VL +L Sbjct: 1 MKFIELPLSEQVLKGIEAAGFTDCTEVQEKVLPISLSHRDVMAQSKTGSGKTAVYVLTIL 60 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKK 118 + +E P+ LI+ PTRELA Q+ ++ K + ++V GG+ + Q++ Sbjct: 61 QSFVEAQNQGKSKPKALIVAPTRELAVQIEEDTLKLASGMDDVSVGCFFGGVGYGKQDEI 120 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177 LE+G D+ +CTPGRILD+ K+ +I ++DEADR+ DMGF P IQ + SL+ Sbjct: 121 LEKGCDIFVCTPGRILDYQKMHKIDFRQFDIFIVDEADRLFDMGFYPDIQKMFSLLRACT 180 Query: 178 -RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT+LFSAT+ +++ ++ +F+ P +EV T + I + +K L Sbjct: 181 DRQTMLFSATLGTKVRNLAWSFMNEPVELEVQPEEITVKAITQELF--HISKDQKFGLFL 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +L++ ++ +N +IF N K + + L G+ + G++ Q R++ + K+G I Sbjct: 239 KLMKKENP-ENCLIFTNTKARCIEVAKRLSLNGYPTKYLMGDLPQTKRLQTIERMKDGKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 + +VA+D+AARGL I D+ V N+D+P+ E+Y+HRIGRT RAG+ GK+ TL +E + + Sbjct: 298 KFLVATDVAARGLQIDDLQLVVNYDIPDDFESYVHRIGRTARAGKSGKSITLADEEYVFN 357 Query: 357 IDAIEKLIEKKV 368 ++ IE I+ K+ Sbjct: 358 LEPIENYIQMKI 369 >gi|302812625|ref|XP_002987999.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii] gi|300144105|gb|EFJ10791.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii] Length = 505 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 210/387 (54%), Gaps = 21/387 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+ V+ VL AG+ +PT IQ + P+ L+ D+ G+A+TG+GKT +++LP + Sbjct: 87 FAEASFPDYVLQEVLKAGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAYLLPAIVH 146 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L G P L+L PTRELA Q+ K+G + + + GG P Q Sbjct: 147 VNAQPYLAPGDG----PIVLVLAPTRELAVQIQQESAKFGSSSKIKSTCIYGGAPKGPQI 202 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L+RG +++I TPGR++D + + LV+DEADRMLDMGF P I+ I + Sbjct: 203 RDLQRGVEIVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRP 262 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-----STAETIEHCFVATYAQYSKK 231 RQTL +SAT ++++++ FL +P ++ + + S S A+ +E V Y +Y K Sbjct: 263 DRQTLYWSATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVE--VVNDYEKYQKL 320 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL + + + IF K+ + L +G+ +IHG+ Q R +LS F Sbjct: 321 IKLLDEFMDGGKIL----IFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEF 376 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K G +M A+D+AARGLD+ D+ +V N+D P E+Y+HRIGRTGRAG G A+T Sbjct: 377 KTGKSPIMTATDVAARGLDVKDIRYVINYDFPGSCEDYVHRIGRTGRAGAKGTAYTFFTV 436 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378 + KH + ++ + + +L S+ Sbjct: 437 SNAKHARELVSILSEAGQRITPELQSM 463 >gi|66357446|ref|XP_625901.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc) [Cryptosporidium parvum Iowa II] gi|46226956|gb|EAK87922.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc) [Cryptosporidium parvum Iowa II] Length = 446 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 213/370 (57%), Gaps = 11/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++ A G+ PT IQ KTIP+ L+ D+ G+A+TG+GKT SF++P+L Sbjct: 35 FASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQR 94 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + +IL PTREL Q+++ F +G +L +A L+GG+ Q+ L + Sbjct: 95 LLDDQVPMY---AVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKK 151 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ +PGR++DH K + I+ LV+DEADR+L M F + I P R T Sbjct: 152 PHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPRNRTTY 211 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239 LFSATMT ++ K+ + L NP +I VNT TA + + F+ ++S +LQ L Sbjct: 212 LFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGMLQNLG 271 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q GIIFCN N ++ GF+ ++HG + Q R+ L+ FK +L+ Sbjct: 272 Q-----YTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLL 326 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++ +RGLDIP V V NFD+P +++Y+HR+GRT RAGR G+A ++V + D++ Sbjct: 327 FTTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQR 386 Query: 360 IEKLIEKKVD 369 IE + +K+D Sbjct: 387 IEFALNRKLD 396 >gi|326911972|ref|XP_003202329.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Meleagris gallopavo] Length = 645 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 214/378 (56%), Gaps = 19/378 (5%) Query: 12 VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65 V+ A++D + +PTPIQ + PL L D+ GIAQTG+GKT +++LP + LE+ Sbjct: 91 VMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 150 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 G P L+L PTRELA QV + YGK L + GG P Q + LERG ++ Sbjct: 151 GDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEI 206 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 I TPGR++D GK + LV+DEADRMLDMGF P I+ I + RQTL++SA Sbjct: 207 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 266 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQ 240 T E+++++E+FLQ+ +I V +A + ++ C + + K L+++++ Sbjct: 267 TWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEEIMA 324 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ IIF K+ +L + + G+ IHG+ Q R +L+ F+ G +++ Sbjct: 325 EKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILI 382 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLD+ DV V N+D PN +E+Y+HRIGRT R+ G A+T ++K + Sbjct: 383 ATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 442 Query: 361 EKLIEKKVDWLNGDLSSL 378 K++E+ +N L L Sbjct: 443 IKVLEEANQAINPKLMQL 460 >gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980] gi|160380609|sp|A7E449|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2 gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980 UF-70] Length = 572 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 209/373 (56%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ PTPIQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 151 FDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 210 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 211 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQI 266 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L +G +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 267 RDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRP 326 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E++ ++ ++L + ++ + + +A V +++ K+ + + Sbjct: 327 DRQTCMWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTK 386 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + N I IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 387 HLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 446 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ ++ HVFN+D PN +E+YIHRIGRTGRAG+ G A TL ++ K Sbjct: 447 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQK 506 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 507 QARDLVNVLTEAK 519 >gi|160380652|sp|A7A0P8|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName: Full=Deficiency of ribosomal subunits protein 1 gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789] gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a] gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 754 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 147/407 (36%), Positives = 227/407 (55%), Gaps = 23/407 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L LS V+ + GYVKP+PIQ TIP+ L D+ A TG+GKTA+F++P++ Sbjct: 234 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L A++ R ++L PTRELA QVAD ++ + + +T L +GG+ Q + L+ Sbjct: 294 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 353 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D++I TPGR +DH N ++++EILV+DEADRML+ GF + I L+P RQ Sbjct: 354 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 413 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM +++ + L+ P RI ++ P A + FV + K ALL L+ Sbjct: 414 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 473 Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D K ++F +K+ L + G SV +HG++ Q R+ ++ FK + Sbjct: 474 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 533 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353 +++ +DLA+RGLDIP + V N+D+P E Y+HR+GRT RAGR G++ T V + Sbjct: 534 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593 Query: 354 -----IKHIDAIEKLIEKK-----VDWL-----NGDLSSLNPPLEKI 385 IK ++ + L + K VDW+ N + S+N +E I Sbjct: 594 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDI 640 >gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c] gi|1706521|sp|P32892|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName: Full=Deficiency of ribosomal subunits protein 1 gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae] gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae] gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c] Length = 752 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 147/407 (36%), Positives = 227/407 (55%), Gaps = 23/407 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L LS V+ + GYVKP+PIQ TIP+ L D+ A TG+GKTA+F++P++ Sbjct: 232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 291 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L A++ R ++L PTRELA QVAD ++ + + +T L +GG+ Q + L+ Sbjct: 292 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 351 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D++I TPGR +DH N ++++EILV+DEADRML+ GF + I L+P RQ Sbjct: 352 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 411 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM +++ + L+ P RI ++ P A + FV + K ALL L+ Sbjct: 412 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 471 Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D K ++F +K+ L + G SV +HG++ Q R+ ++ FK + Sbjct: 472 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 531 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353 +++ +DLA+RGLDIP + V N+D+P E Y+HR+GRT RAGR G++ T V + Sbjct: 532 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 591 Query: 354 -----IKHIDAIEKLIEKK-----VDWL-----NGDLSSLNPPLEKI 385 IK ++ + L + K VDW+ N + S+N +E I Sbjct: 592 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDI 638 >gi|150017632|ref|YP_001309886.1| DEAD/DEAH box helicase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904097|gb|ABR34930.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 481 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 133/402 (33%), Positives = 233/402 (57%), Gaps = 16/402 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F D LS +++ A+ + + T +Q + IP+ L+ D+ ++TG+GKTAS+ +P+ Sbjct: 5 NFNDYKLSSELLKAISMLNFKELTKVQEQVIPIALEEKDIVVKSKTGSGKTASYAIPICQ 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +++ + P+ L++ PTRELA QV ++F G+ + A + G F Q K+L++ Sbjct: 65 LVDWEENK---PQALVITPTRELAIQVKEDFFNIGRFKRIKAAAIYGKSSFYDQEKELKQ 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGRI+DH +G ++ I+ L+IDEAD ML+MGF+ I+ I + R T+ Sbjct: 122 KTHIVVGTPGRIIDHIEKGTFDLSKIKYLIIDEADEMLNMGFVEQIETIIKSLSKERVTM 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL--L 239 L SATM +++ + ++++P IE+ + A+ I C K LL+ + L Sbjct: 182 LLSATMPKDIETLCNKYMKDPIHIEIEEQNKAADNI--CQERYNVNELNKIDLLRDITIL 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ D+ +IFCN K+ V + L K + IHG ++Q R+++++NFK G + + Sbjct: 240 ENPDSC---MIFCNTKQKVDEVYKELAKLQYDCRKIHGGMEQSDRLRVMNNFKLGYFRYL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+DI ++ HV N+D+P E+Y+HRIGRTGRAG+ G+A T V + + K ++ Sbjct: 297 IATDVAARGIDIDNITHVINYDIPEDKESYVHRIGRTGRAGKMGRAITFVTQNESKFLND 356 Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQ 401 I + I K++ P +E ++ + A K N P+ Sbjct: 357 IHEYIGKEIPL------KERPKVETVNNLKEEFALKMNTRPE 392 >gi|154271069|ref|XP_001536388.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1] gi|160380608|sp|A6RGE3|DBP2_AJECN RecName: Full=ATP-dependent RNA helicase DBP2 gi|150409611|gb|EDN05055.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1] Length = 542 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 211/374 (56%), Gaps = 13/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ +PT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 127 FDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 187 INAQPLLAPGDG----PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 242 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 243 RDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 302 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT ++++++++FL + ++ + + +A V +++ K+ + + Sbjct: 303 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 362 Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L + + K+ +IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 363 HLDRIMEANKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 422 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A TL ++ Sbjct: 423 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 482 Query: 355 KHI-DAIEKLIEKK 367 K D + L E K Sbjct: 483 KQARDLVAILSESK 496 >gi|323508819|dbj|BAJ77303.1| cgd4_3180 [Cryptosporidium parvum] gi|323510507|dbj|BAJ78147.1| cgd4_3180 [Cryptosporidium parvum] Length = 441 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 213/370 (57%), Gaps = 11/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LG+ ++ A G+ PT IQ KTIP+ L+ D+ G+A+TG+GKT SF++P+L Sbjct: 30 FASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQR 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + +IL PTREL Q+++ F +G +L +A L+GG+ Q+ L + Sbjct: 90 LLDDQVPMY---AVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKK 146 Query: 123 ADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ +PGR++DH K + I+ LV+DEADR+L M F + I P R T Sbjct: 147 PHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPRNRTTY 206 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI--EHCFVATYAQYSKKCALLQQLL 239 LFSATMT ++ K+ + L NP +I VNT TA + + F+ ++S +LQ L Sbjct: 207 LFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGMLQNLG 266 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q GIIFCN N ++ GF+ ++HG + Q R+ L+ FK +L+ Sbjct: 267 Q-----YTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLL 321 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++ +RGLDIP V V NFD+P +++Y+HR+GRT RAGR G+A ++V + D++ Sbjct: 322 FTTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQR 381 Query: 360 IEKLIEKKVD 369 IE + +K+D Sbjct: 382 IEFALNRKLD 391 >gi|170767442|ref|ZP_02901895.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627] gi|170123776|gb|EDS92707.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627] Length = 444 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|143454043|sp|Q0INC5|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28 gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa Japonica Group] gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group] gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group] Length = 802 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 146/366 (39%), Positives = 206/366 (56%), Gaps = 11/366 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L LS ++ A GY KPTPIQ IPL L D+CG A TG+GKTA+F LP+L Sbjct: 196 FLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 255 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L RV R LIL PTRELAAQV EK + ++ L++GG+ + Q L Sbjct: 256 LLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSM 315 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGRI+DH N + + ++ IL++DEADR+L++GF IQ + + P RQT+ Sbjct: 316 PDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTM 375 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVN----TPSSTAETIEHCFVATYAQYSKKCALLQQ 237 LFSATMT+E+ ++ L P R+E + P++ E + A A +++ LL Sbjct: 376 LFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREA--NQEAVLLAL 433 Query: 238 LLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L+ T K+ IIF K + L G +HGN+ Q R++ L FK+ + Sbjct: 434 CLK---TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEV 490 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++A+D+AARG+DI V V NF P A Y+HR+GRT RAGR G A T V +D Sbjct: 491 DFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSL 550 Query: 357 IDAIEK 362 + AI K Sbjct: 551 LKAIAK 556 >gi|262403204|ref|ZP_06079764.1| ATP-dependent RNA helicase [Vibrio sp. RC586] gi|262350703|gb|EEY99836.1| ATP-dependent RNA helicase [Vibrio sp. RC586] Length = 448 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 213/389 (54%), Gaps = 12/389 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL +++ + + + T IQ + IPL + D+ ++TG+GKT +FVLPML Sbjct: 1 MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 K +A + PR +IL PTRELA QV + T ++ GG F Q K L Sbjct: 61 HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATVITGGENFNDQVKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 RG ++ TPGR+ DH + L ++ +E LV+DEADRMLD+GF ++ I + R Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QTL+FSAT+ ++ ++ L +PKRI + S + I +H ++ + + K ALL Sbjct: 181 QTLMFSATLDHADVNDMAMEMLNDPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++L D + IIF + + L L K A+ GN++Q R I+ F+ Sbjct: 239 RILADAD-YRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERTVF 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++V +D+A+RGLDIP V HV NFD+P E Y+HRIGRTGRAG G A +LV +D Sbjct: 298 KILVTTDVASRGLDIPSVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDS 357 Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380 +E +++++ + L G L P Sbjct: 358 FKRVEAFLQQEIQFDVMEGLEGKFKGLKP 386 >gi|91206542|sp|Q4PHU9|DBP2_USTMA RecName: Full=ATP-dependent RNA helicase DBP2 Length = 552 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 204/361 (56%), Gaps = 14/361 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G ++ + G+ +P+ IQ + P+ L D+ IA+TG+GKT F LP + Sbjct: 132 FDEAGFPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPAMVH 191 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L+ G P LIL PTRELA Q+ ++G + L + GG+P Q Sbjct: 192 INAQPLLKPGDG----PIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQI 247 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L+RGA++ I TPGR++D + GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 248 RDLQRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRP 307 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL+FSAT E+Q+++ +FL N ++ + + A + ++ KK L+ Sbjct: 308 DRQTLMFSATWPKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIG 367 Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L + +NG IIF + K+ +L L + G+ AIHG+ Q+ R +L+ FK G Sbjct: 368 HL--ETISAENGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSG 425 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +MVA+ +A+RGLD+ D+ +V N+D P E+Y+H+IGRTGRAGR G A+T E+ Sbjct: 426 RSPIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENS 485 Query: 355 K 355 K Sbjct: 486 K 486 >gi|256073063|ref|XP_002572852.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni] gi|238658018|emb|CAZ29084.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni] Length = 769 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 147/425 (34%), Positives = 237/425 (55%), Gaps = 7/425 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59 + F +L + ++ + G+ PTPIQ + P+ L DV GIAQTG+GKTASF+LP + Sbjct: 92 LSFNELNVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASFLLPAV 151 Query: 60 LTILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + I+ + R R P LIL PTRELA QV +++ +L GG Q ++ Sbjct: 152 IHIMAQPRLLRNEGPICLILVPTRELAQQVLVVAKEFADAASLRAMCFYGGSAKGTQLRE 211 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 +++G ++ I TPGR++D + L++ + LV+DEADRMLDMGF P I+ I R Sbjct: 212 MQKGGEICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRPDR 271 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL++SAT E+Q ++ FL + ++ + + S A V +SK+ L++ L Sbjct: 272 QTLMWSATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIE-L 330 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L S + ++F K+ L +SL ++GF V A+HG QR R L+NFK G + + Sbjct: 331 LTSFGRART-LVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNI 389 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+A+RGLDI ++ +V NFD PN+ E+YIHRIGRT R+ + G AFT ++++ Sbjct: 390 LVATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQAR 449 Query: 359 AIEKLIEKKVDWLNGD---LSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSS 415 + ++++ ++ + L+ ++ L K + N P + TGF ++ + Sbjct: 450 DLIDILDEANQEISAELVQLAGMSNYLRKSSTLKKNPPAFQQKPPGRITGFGNSSSSFPT 509 Query: 416 QKSHI 420 Q I Sbjct: 510 QDIRI 514 >gi|224095173|ref|XP_002195734.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Taeniopygia guttata] Length = 842 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 214/378 (56%), Gaps = 19/378 (5%) Query: 12 VVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEK 65 V+ A++D + +PTPIQ + PL L D+ GIAQTG+GKT +++LP + LE+ Sbjct: 289 VMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER 348 Query: 66 GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 G P L+L PTRELA QV + YGK L + GG P Q + LERG ++ Sbjct: 349 GDG----PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEI 404 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 I TPGR++D GK + LV+DEADRMLDMGF P I+ I + RQTL++SA Sbjct: 405 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 464 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQ 240 T E+++++E+FLQ+ +I V +A + ++ C + + K L+++++ Sbjct: 465 TWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESE--KDHKLIQLMEEIMA 522 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ IIF K+ +L + + G+ IHG+ Q R +L+ F+ G +++ Sbjct: 523 EKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILI 580 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLD+ DV V N+D PN +E+Y+HRIGRT R+ G A+T ++K + Sbjct: 581 ATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 640 Query: 361 EKLIEKKVDWLNGDLSSL 378 K++E+ +N L L Sbjct: 641 IKVLEEANQAINPKLMQL 658 >gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group] Length = 639 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/383 (36%), Positives = 212/383 (55%), Gaps = 23/383 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP+ + D+ AQTG+GKTA+F P+++ Sbjct: 172 FAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISG 231 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + R +R P LIL PTREL+ Q+ + K+ + V + GG P Q Sbjct: 232 IMRSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQ 291 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG ++L+ TPGR++D R ++ + I+ L +DEADRMLDMGF P I+ I + Sbjct: 292 LRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMD 351 Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT E+Q+++ +FL + + V S+ + I + + K Sbjct: 352 MPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQR--VEFVLDADK 409 Query: 232 CALLQQLLQSQDTMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 + L LL +Q NG ++F K+ L + L GF +IHG+ Q+ Sbjct: 410 RSYLMDLLHAQRA--NGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQE 467 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G Sbjct: 468 REYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSG 527 Query: 344 KAFTLVAKEDIKHIDAIEKLIEK 366 A + + + +L+++ Sbjct: 528 LATAFFNESNTPLARPLSELMQE 550 >gi|331664144|ref|ZP_08365054.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143] gi|331059943|gb|EGI31920.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143] Length = 444 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1] gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1] gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1] gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1] Length = 560 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 214/372 (57%), Gaps = 14/372 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110 Query: 63 L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QV+ + V + GG+ +E+Q Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ P Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 230 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232 +RQT+LFSATM + ++ + L+ P + +T ++ +T + + A K Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ ++LQ+ D K IIFC K+ L L+ +GF AIHG++ Q +R K L F+ Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 346 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406 Query: 353 DIKHIDAIEKLI 364 D+ I K + Sbjct: 407 DVTRWKLINKAL 418 >gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group] gi|75325411|sp|Q6Z4K6|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName: Full=OsPL10b gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group] gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group] gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group] Length = 638 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/383 (36%), Positives = 212/383 (55%), Gaps = 23/383 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP+ + D+ AQTG+GKTA+F P+++ Sbjct: 171 FAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISG 230 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + R +R P LIL PTREL+ Q+ + K+ + V + GG P Q Sbjct: 231 IMRSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQ 290 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG ++L+ TPGR++D R ++ + I+ L +DEADRMLDMGF P I+ I + Sbjct: 291 LRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMD 350 Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT E+Q+++ +FL + + V S+ + I + + K Sbjct: 351 MPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQR--VEFVLDADK 408 Query: 232 CALLQQLLQSQDTMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 + L LL +Q NG ++F K+ L + L GF +IHG+ Q+ Sbjct: 409 RSYLMDLLHAQRA--NGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQE 466 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G Sbjct: 467 REYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSG 526 Query: 344 KAFTLVAKEDIKHIDAIEKLIEK 366 A + + + +L+++ Sbjct: 527 LATAFFNESNTPLARPLSELMQE 549 >gi|86132787|ref|ZP_01051379.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] gi|85816741|gb|EAQ37927.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] Length = 454 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 210/370 (56%), Gaps = 6/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DL L + A+ D GY +PTPIQ+ + V+ DV GIAQTGTGKT +++LP+L Sbjct: 3 MTFKDLNLDKFLWNALDDMGYTQPTPIQVDALAPVMSGSDVVGIAQTGTGKTFAYLLPIL 62 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L R PR LIL PTREL QV + EK K ++ +A + GG Q + Sbjct: 63 RTLPYSRQE--NPRVLILVPTRELVLQVVNELEKLTKYIDVRIAGVYGGSNINTQKALIA 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +G D+++ TPGR+ D L + +I+ +VIDE D MLD+GF P + NI ++P RQ Sbjct: 121 QGQDIVVATPGRLYDLAVSRVLQLKSIQKVVIDEVDVMLDLGFRPQLMNIFDILPKRRQH 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 ++FSATMT+++ + +++ PK I+V + E I+ Y+K +L++L Sbjct: 181 IMFSATMTEDVDALIKDYFNKPKFIKVARSGTPLENIKQVGYKIPNFYTKVNFILEELAS 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQL 298 ++ K ++F K+ L LE + F V IH N Q R+ ++ F EG +++ Sbjct: 241 AKAYPKT-LLFVRDKRMADRLYLKLE-EAFPGQVDLIHSNKTQNYRINSINAFSEGKVRM 298 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 MVA+D+ ARGLDI D+ HV N + P ENY+HRIGRTGRA + G + L + ++ Sbjct: 299 MVATDVMARGLDIDDITHVINVNTPRFPENYLHRIGRTGRAQKEGTSIVLSTPAEDAFLE 358 Query: 359 AIEKLIEKKV 368 IE L+ KV Sbjct: 359 EIEALMGVKV 368 >gi|313246316|emb|CBY35237.1| unnamed protein product [Oikopleura dioica] Length = 653 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 12/372 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF L P + V A Y PTP+Q +P++ D+ AQTG+GKTA+F++PML+ Sbjct: 198 DFVSAELGPIITENVKLAHYTVPTPVQKYAVPIIHAGRDIMSCAQTGSGKTAAFLMPMLS 257 Query: 62 -------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + + ++R P L+L PTREL Q+ K+ + ++ GG Sbjct: 258 NIFHNPGKIPRHQSRKAYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGE 317 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L RG +L+ TPGR+ D RGK+ + L +DEADRMLDMGF P I+ I V Sbjct: 318 QLRDLSRGCHLLVATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKV 377 Query: 175 --PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 P RQTL+FSAT ++Q ++ +FL+N + V ST+ I F Y Q ++K Sbjct: 378 IFPSDRQTLMFSATFPKQIQALASDFLENYIFLAVGRVGSTSANITQRF--EYVQETEKV 435 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L +LL++ M I+F KK L H L ++G+ IHG+ +Q+ R + + FK Sbjct: 436 RKLCELLENGQEMLT-IVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFK 494 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+ +AARGLDIP+V HV NFD+P+ + Y+HRIGRTGRAG G A ++ Sbjct: 495 SGQTPILVATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWATAFYNEK 554 Query: 353 DIKHIDAIEKLI 364 + K D + +L+ Sbjct: 555 NAKISDDLLQLL 566 >gi|323173106|gb|EFZ58737.1| ATP-dependent RNA helicase srmB [Escherichia coli LT-68] Length = 442 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|68249023|ref|YP_248135.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP] gi|68057222|gb|AAX87475.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP] Length = 439 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 135/383 (35%), Positives = 212/383 (55%), Gaps = 6/383 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F LSP+++ A+ GY +PT IQ++ IP ++ DV G A TGTGKTA+F+LP L Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + P LIL PTRELA QVA+ E+ + +L +A + GG+ ++ Sbjct: 66 LLDYPRRKPGPPCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+L + ++E+L+ DEADRML MGF + I + + +QTL Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +++ + I + + K LL + ++ Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSN-EHKIKLLARFIE 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++ + GI+F ++++ + +L K+G + G + Q R + K G + ++V Sbjct: 245 TEKVTR-GIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV HV NFD+P A+ Y+HRIGRT RAG+ G A + V D K + I Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363 Query: 361 EKLIEK--KVDWLNGDLSSLNPP 381 ++ E+ K L G PP Sbjct: 364 KRYTEEILKARILAGLEPRTKPP 386 >gi|15832696|ref|NP_311469.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. Sakai] gi|24113917|ref|NP_708427.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 301] gi|26248941|ref|NP_754981.1| ATP-dependent RNA helicase SrmB [Escherichia coli CFT073] gi|30063977|ref|NP_838148.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 2457T] gi|74313139|ref|YP_311558.1| ATP-dependent RNA helicase SrmB [Shigella sonnei Ss046] gi|91211903|ref|YP_541889.1| ATP-dependent RNA helicase SrmB [Escherichia coli UTI89] gi|110642738|ref|YP_670468.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536] gi|110806520|ref|YP_690040.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 5 str. 8401] gi|117624797|ref|YP_853710.1| ATP-dependent RNA helicase SrmB [Escherichia coli APEC O1] gi|157162056|ref|YP_001459374.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS] gi|168748352|ref|ZP_02773374.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4113] gi|168757760|ref|ZP_02782767.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4401] gi|168765031|ref|ZP_02790038.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4501] gi|168768681|ref|ZP_02793688.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4486] gi|168773496|ref|ZP_02798503.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4196] gi|168778555|ref|ZP_02803562.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4076] gi|168790377|ref|ZP_02815384.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC869] gi|170019141|ref|YP_001724095.1| ATP-dependent RNA helicase SrmB [Escherichia coli ATCC 8739] gi|170684258|ref|YP_001744765.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5] gi|188494838|ref|ZP_03002108.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638] gi|191174027|ref|ZP_03035544.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11] gi|193064108|ref|ZP_03045193.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22] gi|194429273|ref|ZP_03061800.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171] gi|194432156|ref|ZP_03064445.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012] gi|194437565|ref|ZP_03069661.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1] gi|195936724|ref|ZP_03082106.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4024] gi|208805922|ref|ZP_03248259.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4206] gi|208813312|ref|ZP_03254641.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4045] gi|208820708|ref|ZP_03261028.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4042] gi|209397789|ref|YP_002272051.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4115] gi|209920055|ref|YP_002294139.1| ATP-dependent RNA helicase SrmB [Escherichia coli SE11] gi|215487920|ref|YP_002330351.1| ATP-dependent RNA helicase SrmB [Escherichia coli O127:H6 str. E2348/69] gi|217327593|ref|ZP_03443676.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. TW14588] gi|218547896|ref|YP_002381687.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ATCC 35469] gi|218555158|ref|YP_002388071.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI1] gi|218559497|ref|YP_002392410.1| ATP-dependent RNA helicase SrmB [Escherichia coli S88] gi|218696204|ref|YP_002403871.1| ATP-dependent RNA helicase SrmB [Escherichia coli 55989] gi|218701090|ref|YP_002408719.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI39] gi|218706079|ref|YP_002413598.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMN026] gi|227887612|ref|ZP_04005417.1| ATP-dependent RNA helicase [Escherichia coli 83972] gi|237705086|ref|ZP_04535567.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA] gi|253772524|ref|YP_003035355.1| ATP-dependent RNA helicase SrmB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162551|ref|YP_003045659.1| ATP-dependent RNA helicase SrmB [Escherichia coli B str. REL606] gi|254794527|ref|YP_003079364.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. TW14359] gi|256017274|ref|ZP_05431139.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9] gi|256021737|ref|ZP_05435602.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 4_1_40B] gi|260845261|ref|YP_003223039.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str. 12009] gi|260856670|ref|YP_003230561.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str. 11368] gi|260869263|ref|YP_003235665.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str. 11128] gi|261222988|ref|ZP_05937269.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000] gi|261259462|ref|ZP_05951995.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. FRIK966] gi|291283852|ref|YP_003500670.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str. CB9615] gi|293406018|ref|ZP_06650010.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412] gi|293410992|ref|ZP_06654568.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354] gi|293415845|ref|ZP_06658488.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185] gi|293446931|ref|ZP_06663353.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088] gi|298381818|ref|ZP_06991417.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302] gi|300820745|ref|ZP_07100895.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7] gi|300898309|ref|ZP_07116657.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1] gi|300904240|ref|ZP_07122099.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1] gi|300920744|ref|ZP_07137150.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1] gi|300927702|ref|ZP_07143270.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1] gi|300935710|ref|ZP_07150679.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1] gi|300951705|ref|ZP_07165525.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1] gi|300958783|ref|ZP_07170895.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1] gi|300974119|ref|ZP_07172469.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1] gi|300982280|ref|ZP_07175991.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1] gi|301021938|ref|ZP_07185897.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1] gi|301024863|ref|ZP_07188500.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1] gi|301047215|ref|ZP_07194307.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1] gi|301302943|ref|ZP_07209071.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1] gi|301648340|ref|ZP_07248080.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1] gi|306814360|ref|ZP_07448522.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101] gi|307139213|ref|ZP_07498569.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736] gi|312965492|ref|ZP_07779724.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75] gi|312973178|ref|ZP_07787350.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70] gi|331643200|ref|ZP_08344335.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736] gi|331648323|ref|ZP_08349412.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605] gi|331654039|ref|ZP_08355040.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718] gi|331658721|ref|ZP_08359665.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206] gi|331669327|ref|ZP_08370175.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271] gi|331674026|ref|ZP_08374789.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280] gi|331678573|ref|ZP_08379248.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591] gi|331684226|ref|ZP_08384822.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299] gi|332278266|ref|ZP_08390679.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9] gi|26109347|gb|AAN81549.1|AE016764_231 ATP-dependent RNA helicase srmB [Escherichia coli CFT073] gi|13362913|dbj|BAB36865.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai] gi|24053020|gb|AAN44134.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301] gi|30042233|gb|AAP17958.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T] gi|73856616|gb|AAZ89323.1| ATP-dependent RNA helicase [Shigella sonnei Ss046] gi|91073477|gb|ABE08358.1| ATP-dependent RNA helicase [Escherichia coli UTI89] gi|110344330|gb|ABG70567.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536] gi|110616068|gb|ABF04735.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401] gi|115513921|gb|ABJ01996.1| putative transcriptional regulator YfiE [Escherichia coli APEC O1] gi|157067736|gb|ABV06991.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS] gi|169754069|gb|ACA76768.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739] gi|170521976|gb|ACB20154.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5] gi|187770668|gb|EDU34512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4196] gi|188017076|gb|EDU55198.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4113] gi|188490037|gb|EDU65140.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638] gi|189003613|gb|EDU72599.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4076] gi|189355321|gb|EDU73740.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4401] gi|189362179|gb|EDU80598.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4486] gi|189365096|gb|EDU83512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4501] gi|189370150|gb|EDU88566.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC869] gi|190905718|gb|EDV65340.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11] gi|192929343|gb|EDV82952.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22] gi|194412681|gb|EDX28976.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171] gi|194419685|gb|EDX35765.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012] gi|194423371|gb|EDX39362.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1] gi|208725723|gb|EDZ75324.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4206] gi|208734589|gb|EDZ83276.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4045] gi|208740831|gb|EDZ88513.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4042] gi|209159189|gb|ACI36622.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC4115] gi|209762790|gb|ACI79707.1| ATP-dependent RNA helicase [Escherichia coli] gi|209762792|gb|ACI79708.1| ATP-dependent RNA helicase [Escherichia coli] gi|209762796|gb|ACI79710.1| ATP-dependent RNA helicase [Escherichia coli] gi|209913314|dbj|BAG78388.1| ATP-dependent RNA helicase [Escherichia coli SE11] gi|215265992|emb|CAS10401.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69] gi|217319960|gb|EEC28385.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. TW14588] gi|218352936|emb|CAU98735.1| ATP-dependent RNA helicase [Escherichia coli 55989] gi|218355437|emb|CAQ88046.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469] gi|218361926|emb|CAQ99526.1| ATP-dependent RNA helicase [Escherichia coli IAI1] gi|218366266|emb|CAR04013.1| ATP-dependent RNA helicase [Escherichia coli S88] gi|218371076|emb|CAR18903.1| ATP-dependent RNA helicase [Escherichia coli IAI39] gi|218433176|emb|CAR14074.1| ATP-dependent RNA helicase [Escherichia coli UMN026] gi|222034281|emb|CAP77022.1| ATP-dependent RNA helicase srmB [Escherichia coli LF82] gi|226901452|gb|EEH87711.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA] gi|227835962|gb|EEJ46428.1| ATP-dependent RNA helicase [Escherichia coli 83972] gi|242378176|emb|CAQ32951.1| SrmB, DEAD-box RNA helicase [Escherichia coli BL21(DE3)] gi|253323568|gb|ACT28170.1| DEAD/DEAH box helicase domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974452|gb|ACT40123.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606] gi|253978619|gb|ACT44289.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)] gi|254593927|gb|ACT73288.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359] gi|257755319|dbj|BAI26821.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str. 11368] gi|257760408|dbj|BAI31905.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str. 12009] gi|257765619|dbj|BAI37114.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str. 11128] gi|281179625|dbj|BAI55955.1| ATP-dependent RNA helicase [Escherichia coli SE15] gi|281601988|gb|ADA74972.1| ATP-dependent RNA helicase [Shigella flexneri 2002017] gi|284922526|emb|CBG35613.1| ATP-dependent RNA helicase [Escherichia coli 042] gi|290763725|gb|ADD57686.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str. CB9615] gi|291323761|gb|EFE63189.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088] gi|291428226|gb|EFF01253.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412] gi|291433493|gb|EFF06472.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185] gi|291471460|gb|EFF13944.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354] gi|294490578|gb|ADE89334.1| ATP-dependent RNA helicase SrmB [Escherichia coli IHE3034] gi|298279260|gb|EFI20774.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302] gi|299881405|gb|EFI89616.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1] gi|300300892|gb|EFJ57277.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1] gi|300308942|gb|EFJ63462.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1] gi|300314531|gb|EFJ64315.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1] gi|300357971|gb|EFJ73841.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1] gi|300396394|gb|EFJ79932.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1] gi|300403773|gb|EFJ87311.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1] gi|300408834|gb|EFJ92372.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1] gi|300412315|gb|EFJ95625.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1] gi|300449067|gb|EFK12687.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1] gi|300459099|gb|EFK22592.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1] gi|300464255|gb|EFK27748.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1] gi|300526498|gb|EFK47567.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7] gi|300841878|gb|EFK69638.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1] gi|301073616|gb|EFK88422.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1] gi|305851754|gb|EFM52206.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101] gi|307554595|gb|ADN47370.1| ATP-dependent RNA helicase SrmB [Escherichia coli ABU 83972] gi|307625875|gb|ADN70179.1| ATP-dependent RNA helicase SrmB [Escherichia coli UM146] gi|309702962|emb|CBJ02293.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407] gi|310331773|gb|EFP99008.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70] gi|312289912|gb|EFR17800.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75] gi|312947148|gb|ADR27975.1| ATP-dependent RNA helicase SrmB [Escherichia coli O83:H1 str. NRG 857C] gi|313648255|gb|EFS12699.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2a str. 2457T] gi|315256604|gb|EFU36572.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1] gi|315287992|gb|EFU47394.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3] gi|315294533|gb|EFU53881.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1] gi|315300543|gb|EFU59772.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3] gi|315615838|gb|EFU96470.1| ATP-dependent RNA helicase srmB [Escherichia coli 3431] gi|320188917|gb|EFW63576.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. EC1212] gi|320196412|gb|EFW71036.1| ATP-dependent RNA helicase SrmB [Escherichia coli WV_060327] gi|320200140|gb|EFW74729.1| ATP-dependent RNA helicase SrmB [Escherichia coli EC4100B] gi|320640825|gb|EFX10319.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. G5101] gi|320657068|gb|EFX24887.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662733|gb|EFX30072.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str. USDA 5905] gi|320667553|gb|EFX34473.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. LSU-61] gi|323156234|gb|EFZ42393.1| ATP-dependent RNA helicase srmB [Escherichia coli EPECa14] gi|323159233|gb|EFZ45223.1| ATP-dependent RNA helicase srmB [Escherichia coli E128010] gi|323167785|gb|EFZ53480.1| ATP-dependent RNA helicase srmB [Shigella sonnei 53G] gi|323177294|gb|EFZ62882.1| ATP-dependent RNA helicase srmB [Escherichia coli 1180] gi|323184544|gb|EFZ69918.1| ATP-dependent RNA helicase srmB [Escherichia coli 1357] gi|323188309|gb|EFZ73601.1| ATP-dependent RNA helicase srmB [Escherichia coli RN587/1] gi|323936316|gb|EGB32607.1| DEAD/DEAH box helicase [Escherichia coli E1520] gi|323941161|gb|EGB37346.1| DEAD/DEAH box helicase [Escherichia coli E482] gi|323944576|gb|EGB40645.1| DEAD/DEAH box helicase [Escherichia coli H120] gi|323949230|gb|EGB45121.1| DEAD/DEAH box helicase [Escherichia coli H252] gi|323955812|gb|EGB51570.1| DEAD/DEAH box helicase [Escherichia coli H263] gi|323961191|gb|EGB56804.1| DEAD/DEAH box helicase [Escherichia coli H489] gi|323968024|gb|EGB63436.1| DEAD/DEAH box helicase [Escherichia coli M863] gi|323978394|gb|EGB73479.1| DEAD/DEAH box helicase [Escherichia coli TW10509] gi|324008433|gb|EGB77652.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2] gi|324014379|gb|EGB83598.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1] gi|324020034|gb|EGB89253.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3] gi|324118214|gb|EGC12110.1| DEAD/DEAH box helicase [Escherichia coli E1167] gi|326340382|gb|EGD64186.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. 1125] gi|326345065|gb|EGD68809.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str. 1044] gi|327252286|gb|EGE63958.1| ATP-dependent RNA helicase srmB [Escherichia coli STEC_7v] gi|330912344|gb|EGH40854.1| ATP-dependent RNA helicase SrmB [Escherichia coli AA86] gi|331039998|gb|EGI12218.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736] gi|331042872|gb|EGI15013.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605] gi|331048888|gb|EGI20964.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718] gi|331054386|gb|EGI26413.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206] gi|331064521|gb|EGI36432.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271] gi|331069299|gb|EGI40691.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280] gi|331075033|gb|EGI46353.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591] gi|331079178|gb|EGI50380.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299] gi|332089185|gb|EGI94292.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 155-74] gi|332100618|gb|EGJ03964.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9] gi|332344451|gb|AEE57785.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMNK88] gi|332753986|gb|EGJ84360.1| ATP-dependent RNA helicase srmB [Shigella flexneri 4343-70] gi|332755796|gb|EGJ86154.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2747-71] gi|332761970|gb|EGJ92243.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-671] gi|332766578|gb|EGJ96783.1| srmB, DEAD-box RNA helicase [Shigella flexneri 2930-71] gi|333000838|gb|EGK20410.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-218] gi|333001669|gb|EGK21236.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-272] gi|333015945|gb|EGK35280.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-227] gi|333016831|gb|EGK36157.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-304] Length = 444 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|288921374|ref|ZP_06415654.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] gi|288347226|gb|EFC81523.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] Length = 569 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 206/366 (56%), Gaps = 8/366 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++G+ P+ V A+ + G V+P IQ T+PL L R D+ G A+TGTGKT +F +P++ + Sbjct: 2 FAEIGVRPETVAALAEVGIVRPFAIQELTLPLALARTDIIGQARTGTGKTLAFGIPVVQV 61 Query: 63 LE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ++ + P+ L++ PTREL QV + + G L V + GG +E Q L Sbjct: 62 VQAQDEGADGHPQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLSALRS 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 G D+++ TPGR+LD + L + + LV+DEAD MLD+GF+P ++ I + +P R T+ Sbjct: 122 GVDIVVGTPGRLLDLARQKALDLARVRTLVLDEADEMLDLGFLPDVERIIAFLPEQRHTM 181 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPS---STAETIEHCFVATYAQYSKKCALLQQL 238 LFSATM + ++ F+ P + P + T +H F A K +L ++ Sbjct: 182 LFSATMPGPVIGLARRFMSRPVHVRAEQPDEGRTVPNTQQHVF---RAHALDKMEVLARV 238 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 LQ+ D ++F ++ + L ++GF+ A+HG++ Q R + L F+ G + + Sbjct: 239 LQATD-RGLAMVFVRTRRTADKVADDLARRGFAAAAVHGDLGQGQREQALRAFRGGKVDV 297 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+D+ V HV N+ P Y+HRIGRTGRAG G A T V +D+ Sbjct: 298 LVATDVAARGIDVGGVTHVVNYQCPEDENVYLHRIGRTGRAGGSGVAITFVDWDDLPRWT 357 Query: 359 AIEKLI 364 + K + Sbjct: 358 LVNKAL 363 >gi|78048143|ref|YP_364318.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036573|emb|CAJ24264.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 458 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 213/381 (55%), Gaps = 9/381 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ L LSP + + GY TPIQ +++P +LQ DV A TG+GKTA+F L +L Sbjct: 3 EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ R + L+L PTRELA QV K N+ + +L GG+P Q LE Sbjct: 63 KLDPAVTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119 Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 V++ TPGRI + + L + + LV+DEADRMLDMGF I+ I S RQ Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT D ++ ++ L+ P I V S E I+ F Y +K A+ LL Sbjct: 180 SLLFSATFPDSIRTLARELLKEPVEITVEGADSAPE-IDQQFFEVDPTYRQK-AVAGLLL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN +K V + SL++ GFS A+HG+++QR R ++L F + ++ Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLD+ D+ V N+++P E Y HRIGRT RAG+HG A +LVA + A Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355 Query: 360 IEKLIEKKVDWLNGDLSSLNP 380 +E + + W L++ P Sbjct: 356 LEAEQGQPLKWSRAPLATARP 376 >gi|297200725|ref|ZP_06918122.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083] gi|197712294|gb|EDY56328.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083] Length = 721 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 135/346 (39%), Positives = 188/346 (54%), Gaps = 5/346 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL VV + G P PIQ TIP L D+ G +TG+GKT SF LP L Sbjct: 30 FASLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAR 89 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L GR PR +IL PTRELA QVAD + YG L + ++ GG Q LERG Sbjct: 90 LSGGRTEKHRPRAVILTPTRELAMQVADALQPYGDQLGLKMKVVCGGTSMSNQIYALERG 149 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 DVL+ TPGR+ D NRG + +IE+ VIDEAD+M D+GF+P + + VP Q +L Sbjct: 150 VDVLVATPGRLRDLINRGACSLQDIEVAVIDEADQMSDLGFLPEVTELLDQVPAGGQRML 209 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +E+ + + +L NP EV++ T+ H + K A + + S+ Sbjct: 210 FSATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIV---KPKDKAPVTAAIASR 266 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 IIF + + L + G A+HG + Q +R + L++FK+G + +VA+ Sbjct: 267 KGRT--IIFVRTQLGADRIAEQLRESGVKADALHGGMTQGARTRTLADFKDGYVNALVAT 324 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 D+AARG+ + + V N D ++Y+HR GRT RAGR G +L Sbjct: 325 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSL 370 >gi|156547765|ref|XP_001605842.1| PREDICTED: similar to CG9748-PA [Nasonia vitripennis] Length = 708 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 151/391 (38%), Positives = 215/391 (54%), Gaps = 23/391 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F ++ L+ + ++ AGY KPTP+Q IP+++ R DV AQTG+GKTA+F++P+L Sbjct: 228 FDEVKLTEIIKNSINLAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQ 287 Query: 62 ILEKGRA---------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 I E G R + P L+L PTRELA Q+ D K+ + A++ GG Sbjct: 288 IYESGPPPLPPNASGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNM 347 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q ++L+RG +L+ TPGR++D RGK+ ++N LV+DEADRMLDMGF P I+ I Sbjct: 348 VEQLRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRRIVE 407 Query: 173 --LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228 +P T RQTL+FSAT E+Q ++ +FL N + V ST+E I V ++ Sbjct: 408 QDTMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWV-EEH 466 Query: 229 SKKCALLQQL----LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSR 284 K+ LL L Q ++F KK L L Q + V +IHG+ Q R Sbjct: 467 EKRSYLLDLLGACNFQEPTQESLTLVFVETKKGADMLEEFLHNQHYPVTSIHGDRSQHER 526 Query: 285 MKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGK 344 L F+ G ++VA+ +AARGLDIP V HV NFD+P E Y+HRIGRTGR G G Sbjct: 527 EDALRRFRSGHTPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGL 586 Query: 345 AFTLVAKEDIKHI-DAIEKLIEKKVD---WL 371 A + ++ + D + L+E + WL Sbjct: 587 ATSFFNSKNQNLVRDLVSLLVEANQELPHWL 617 >gi|324113103|gb|EGC07079.1| DEAD/DEAH box helicase [Escherichia fergusonii B253] gi|325496344|gb|EGC94203.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ECD227] Length = 444 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|319442814|ref|ZP_07991970.1| putative ATP-dependent RNA helicase [Corynebacterium variabile DSM 44702] Length = 456 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 212/379 (55%), Gaps = 20/379 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG++ ++V A+ D G + IQ +T+PL L D+ G A+TG GKT F +PML Sbjct: 8 FRSLGVAAEIVDALTDQGIDRAFAIQERTLPLALTGKDLIGQARTGMGKTLGFGVPMLDR 67 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLT--------------VAL 105 L + R L++ PTREL QVA++ G + LT V Sbjct: 68 LFDDADITELDGTVRGLVVVPTRELCLQVAEDLT--GASTRLTAPVGPGKDATRPFRVTA 125 Query: 106 LIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP 165 + GG+PFE Q L+ G DV++ TPGR+LD + L + ++E+LV+DEAD MLD GF+ Sbjct: 126 IYGGVPFEKQTAALDAGTDVVVGTPGRLLDLSRQNLLDLTHVEVLVLDEADEMLDQGFLD 185 Query: 166 YIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225 ++ I + RQT+LFSATM + ++ +F+ P R+ + S+ A + Sbjct: 186 DVKAIMAQTSPNRQTMLFSATMPGPIVALTRSFMHRPVRVRADNSSAQATHATTTQIVFQ 245 Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 + + ++L ++LQ+ + I+F K++ + L GF V A+HG++ Q R Sbjct: 246 SHRLDRVSVLARILQTPGRGRT-IVFARTKRSAAMVAEDLAGLGFRVGAVHGDMRQNDRE 304 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 + L F++G++ +MVA+D+AARG+D+ DV HV N+ VP + Y+HRIGRTGRAG G A Sbjct: 305 RSLDAFRDGSVDIMVATDVAARGIDVEDVTHVINYQVPEDDKTYVHRIGRTGRAGHSGVA 364 Query: 346 FTLVAKEDIKHIDAIEKLI 364 TLV +D+ AI+ + Sbjct: 365 VTLVDWDDLTRWQAIDDTL 383 >gi|251788689|ref|YP_003003410.1| ATP-dependent RNA helicase SrmB [Dickeya zeae Ech1591] gi|247537310|gb|ACT05931.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591] Length = 450 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 207/362 (57%), Gaps = 15/362 (4%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTLIL 78 G+ +PT IQ + IP ++ DV G A TGTGKTA+++LP+L +L+ R + PR LIL Sbjct: 23 GFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKSGPPRILIL 82 Query: 79 EPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVAD + +L +A + GG+ + + DV++ T GR+L + Sbjct: 83 TPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIK 142 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSEN 197 +E L++DEADRMLDMGF I++I + +QT+LFSAT+ D +Q +E Sbjct: 143 EENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDFAER 202 Query: 198 FLQNPKRIEVNTPS--STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255 L +P IE PS + ++ + A Q+ K ALL LL+ D ++ I+F ++ Sbjct: 203 LLNDPITIEAE-PSRRERKKILQWYYRADDIQH--KTALLSHLLKQPDVTRS-IVFVRKR 258 Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315 + V L L G C + G + Q R + + EG ++++VA+D+AARGLDI DV Sbjct: 259 ERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDIQDVS 318 Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375 HVFNFD+P ++ Y+HRIGRTGRAGR G A +LV D L+EK +LN L Sbjct: 319 HVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDY-------LLLEKVGRYLNEPL 371 Query: 376 SS 377 + Sbjct: 372 KA 373 >gi|229591936|ref|YP_002874055.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] gi|229363802|emb|CAY51237.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] Length = 456 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 213/369 (57%), Gaps = 5/369 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L +++ AV + +V+PTP+Q IPL L+ D+ AQTG+GKTA+FVLP+L Sbjct: 10 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNR 69 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L G A+VR+ +TLIL PTRELA Q E++ + + L+ GG F+ Q L + Sbjct: 70 L-IGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 128 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+LI TPGR+++ N G L + +E+LV+DEADRMLDMGF +Q + + +QT+ Sbjct: 129 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVAECINRQQTM 188 Query: 182 LFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT L+++ L NP+ ++VN S T V T K +L LL Sbjct: 189 LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIV-TADHNVHKEQILNWLL- 246 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + +T + I+F N + + L Q + +HG DQ+ R + K G ++++V Sbjct: 247 ANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILV 306 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLD+ + V NFD+P + Y+HRIGRTGRAG G A +L+ D + +I Sbjct: 307 ATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 366 Query: 361 EKLIEKKVD 369 E+ +++ + Sbjct: 367 ERYLKQSFE 375 >gi|296116226|ref|ZP_06834844.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295977332|gb|EFG84092.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 406 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 215/383 (56%), Gaps = 17/383 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + GL+ V + G P+PIQI+ IP +L DV GIA TGTGKT +F P+ Sbjct: 36 FVETGLTAPVRDNLSRMGVRIPSPIQIQAIPPILSGRDVEGIAPTGTGKTIAFAAPLTQR 95 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L G R+P R + L PTRELA Q + K L V + IGG+P Q + L Sbjct: 96 L-LGAPHERIPHVARIICLSPTRELANQTGGAWRGCAKGTGLKVVVTIGGVPRARQVRDL 154 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 E GAD+L+ TPGR++D + G ++ + LV+DEADRMLD+GFI + +I S +P T Q Sbjct: 155 EAGADILVATPGRLVDLLSDGAVVADATTALVVDEADRMLDLGFIDDMMSIASRLPVTHQ 214 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSATM E+ + L P R++V+T + I + + K L L Sbjct: 215 TLLFSATMPAEIVDLGRRLLHRPVRVKVDTADAPPPRIRQQVM--FIPPRHKLGALVSFL 272 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + + + +IF ++ +L ++L ++ + +HG Q R + L +F++ + ++ Sbjct: 273 STHPS-RRVLIFTETRRQADDLANALGRE-MTCGVMHGEHTQARRERTLRDFRDHKLHVL 330 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+ ARG+D+ DV V N+D+P +AE Y+HRIGRT RAGR G A +L A E Sbjct: 331 IATDVMARGIDVEDVMLVVNYDIPRQAEAYVHRIGRTARAGRQGSALSLCAPE------- 383 Query: 360 IEKLIEKKVDWLNGD-LSSLNPP 381 E+L+ K ++ + G L +++PP Sbjct: 384 -ERLLLKDIERVTGARLKAIDPP 405 >gi|75061689|sp|Q5R6D8|DDX46_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName: Full=DEAD box protein 46 gi|55731939|emb|CAH92678.1| hypothetical protein [Pongo abelii] Length = 1032 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 242/447 (54%), Gaps = 25/447 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 + G+S K++ ++ GY KPTPIQ + IP ++ D+ GIA+TG+GKT +F+LPM Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRH 433 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE+G P +I+ PTRELA Q+ +K+ K L V + GG Q Sbjct: 434 IMDQRSLEEGEG----PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 489 Query: 117 KKLERGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSL 173 +L+RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I Sbjct: 490 AELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 549 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEH-CFVATYAQYSKKC 232 V RQT++FSAT ++ + L P ++V S +E V + K Sbjct: 550 VRPDRQTVMFSATFPRAMEALVRRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKL 609 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L Q ++ IIF +++++ L L + + ++HG IDQ R I+++FK Sbjct: 610 LELLGHYQESGSV---IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 GT +L+VA+ +AARGLD+ + V N+ PN E+Y+HR GRTGRAG G A+T + ++ Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKN 412 ++ I K +E L+G +++ P LEK+ + + I +KS+GF + Sbjct: 727 QARYAGDIIKALE-----LSG--TAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK 779 Query: 413 YSSQKSHIPLKESEKISKLQQDIQEND 439 + + + E +K+ K +Q++D Sbjct: 780 FDETEQALA-NERKKLQKAALGLQDSD 805 >gi|33603341|ref|NP_890901.1| ATP-dependent RNA helicase DbpA [Bordetella bronchiseptica RB50] gi|33577465|emb|CAE34730.1| probable ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] Length = 462 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 143/362 (39%), Positives = 205/362 (56%), Gaps = 10/362 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +++PL+L+ D+ A+TG+GKTA+F L +L L+ R P+ L+L Sbjct: 23 GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNRL---APQALVLC 79 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N+ V L GG Q + L RG +++ TPGRI DH Sbjct: 80 PTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLA 139 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG L ++ + LV+DEADRM+DMGF I I S P RQTLLFSAT D ++K+S F Sbjct: 140 RGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARF 199 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 L+NP I+V + + F Q A L + T+ FCN K Sbjct: 200 LRNPAEIKVEAQHDASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLA----FCNTKIRS 255 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +L L QG S A++G+++QR R +IL F + ++VA+D+AARGLDI ++G V Sbjct: 256 HDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 N DV E ++HRIGR+GR + G A +L + E+++ + IE+ + W DL SL Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKW--ADLGSL 373 Query: 379 NP 380 P Sbjct: 374 RP 375 >gi|257452688|ref|ZP_05617987.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R] gi|317059228|ref|ZP_07923713.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R] gi|313684904|gb|EFS21739.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R] Length = 528 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 8/368 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPML 60 +F +LG+ K++ A+ GY PTPIQ TIP +L D+ G AQTGTGKTA+F LP+L Sbjct: 9 EFRELGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPIL 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 +E + ++L PTRELA QVA+ G + + + + GG + Q K L Sbjct: 69 ENIEHQDK----IQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLR 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GAD+++ TPGR++D R L + +++ ++DEAD ML+MGF+ ++ I ++ Sbjct: 125 NGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSATM E+ KV++ +++ + + V T + + + + K AL + + Sbjct: 185 LFFSATMPSEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEV-NERDKFEALCRIIDL 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++D GI+FC K +V + L +G+ +HG+I Q R L FK I ++V Sbjct: 244 AEDFY--GIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILV 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ D+ HV N+ +P AE+Y+HRIGRTGRAG+ G A T + ++ + + I Sbjct: 302 ATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQI 361 Query: 361 EKLIEKKV 368 +K+++ ++ Sbjct: 362 QKIVKTEI 369 >gi|209762794|gb|ACI79709.1| ATP-dependent RNA helicase [Escherichia coli] Length = 444 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|195484183|ref|XP_002090584.1| GE13195 [Drosophila yakuba] gi|194176685|gb|EDW90296.1| GE13195 [Drosophila yakuba] Length = 821 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%) Query: 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 PK + ++D GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ ++ Sbjct: 401 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 460 Query: 69 RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q +L G Sbjct: 461 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 520 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P T Sbjct: 521 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 580 Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217 RQT++F+ATM +++++ +L+ P + + + E Sbjct: 581 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 640 Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 E V + K+ L++ L + D IIF NQKK L LEK G++ C +HG Sbjct: 641 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 697 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y HRIGRTG Sbjct: 698 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 757 Query: 338 RAGRHGKAFTLVAKED 353 RAG+ G A + V K+D Sbjct: 758 RAGKTGCAISFVTKDD 773 >gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Penicillium marneffei ATCC 18224] gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Penicillium marneffei ATCC 18224] Length = 826 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 142/359 (39%), Positives = 202/359 (56%), Gaps = 3/359 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++ + G+ KPTPIQ K IP+ L DV G A TG+GKT +F++P+L Sbjct: 306 FQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILER 365 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + +V R IL PTRELA Q + K ++T LIGG Q L++ Sbjct: 366 LLYRQRKVPTSRVAILMPTRELAVQCFNVATKLATYTDITFCQLIGGFSLREQENILKKR 425 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D++I TPGR +DH N ++ +EILV+DEADRML+ GF + I + +P +RQT+ Sbjct: 426 PDIIIATPGRFIDHMRNSSSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 485 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240 LFSATMTD + K+ L P R+ V+ TA T+ FV + K+ A L L Q Sbjct: 486 LFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLCQ 545 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 T + IIF QKK + G +HG++ Q R+K + +F++G + ++ Sbjct: 546 QVYTSRV-IIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLL 604 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 A+D+A+RGLDI V V N++ P E Y+HR+GRT RAGR G+A TL A D K + A Sbjct: 605 ATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKVVRA 663 >gi|33598402|ref|NP_886045.1| ATP-dependent RNA helicase DbpA [Bordetella parapertussis 12822] gi|33574531|emb|CAE39177.1| probable ATP-dependent RNA helicase [Bordetella parapertussis] Length = 462 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 143/362 (39%), Positives = 205/362 (56%), Gaps = 10/362 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +++PL+L+ D+ A+TG+GKTA+F L +L L+ R P+ L+L Sbjct: 23 GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNRL---APQALVLC 79 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N+ V L GG Q + L RG +++ TPGRI DH Sbjct: 80 PTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLA 139 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG L ++ + LV+DEADRM+DMGF I I S P RQTLLFSAT D ++K+S F Sbjct: 140 RGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARF 199 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 L+NP I+V + + F Q A L + T+ FCN K Sbjct: 200 LRNPAEIKVEAQHDASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLA----FCNTKIRS 255 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +L L QG S A++G+++QR R +IL F + ++VA+D+AARGLDI ++G V Sbjct: 256 HDLVERLRAQGISAEALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 N DV E ++HRIGR+GR + G A +L + E+++ + IE+ + W DL SL Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKW--ADLGSL 373 Query: 379 NP 380 P Sbjct: 374 RP 375 >gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio parahaemolyticus RIMD 2210633] gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329] Length = 448 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 210/389 (53%), Gaps = 10/389 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F DLGL +++ + + KPT IQ + IP+ + D+ ++TG+GKT +FVLPML Sbjct: 5 LQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ + PR +IL PTRELA QV + AL++GG F Q K L Sbjct: 65 HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKAL 124 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 R ++ TPGR+ DH L ++ +E L++DEADRMLD+GF P ++ I + R Sbjct: 125 RRYPKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRR 184 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTL+FSAT+ E+ ++ L PKRI V + + I F K A+L++ Sbjct: 185 QTLMFSATLDHAEVNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLC-DHLDHKEAILER 243 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L S+ + IIF + + L L ++ A+ GN++Q R I+S F+ + Sbjct: 244 VL-SEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 302 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++V +D+A+RGLDI V HV NFD+P E Y+HR+GRTGRAG G A +LV +D Sbjct: 303 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 362 Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPP 381 IE +++ + + L G L PP Sbjct: 363 KRIETYLQQDLAFSVFEDLKGKFKGLKPP 391 >gi|82546134|ref|YP_410081.1| ATP-dependent RNA helicase RhlB [Shigella boydii Sb227] gi|187732305|ref|YP_001882395.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94] gi|123558220|sp|Q31UK5|RHLB_SHIBS RecName: Full=ATP-dependent RNA helicase rhlB gi|226739553|sp|B2TU12|RHLB_SHIB3 RecName: Full=ATP-dependent RNA helicase rhlB gi|81247545|gb|ABB68253.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227] gi|187429297|gb|ACD08571.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94] Length = 421 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|313497676|gb|ADR59042.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida BIRD-1] Length = 440 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 11/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F+ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 2 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ GR +R +LIL PTRELA Q + + + + L+ GG F+ Q L Sbjct: 62 LVDLKGGRVEIR---SLILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAML 118 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + DVLI TPGR+L+ N G L ++++++L++DEADRMLDMGF ++ + Q Sbjct: 119 RKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQ 178 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQ 237 TLLFSAT L+ + L++P+ + +N+ S AE T + A + Q+ ++ A Q Sbjct: 179 TLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIA---Q 235 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + +T IIF N + + L + +HG DQ+ R + FK+G+ + Sbjct: 236 WLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 295 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + V NFD+P + Y+HR+GRTGRAG G A +L+ D + Sbjct: 296 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLM 355 Query: 358 DAIEKLIEKKVD 369 +IE+ ++++ + Sbjct: 356 SSIERYLKQQFE 367 >gi|157155812|ref|YP_001463900.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A] gi|191167986|ref|ZP_03029788.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A] gi|300817647|ref|ZP_07097862.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1] gi|300927047|ref|ZP_07142799.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1] gi|301330322|ref|ZP_07222969.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1] gi|307313853|ref|ZP_07593469.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|309794370|ref|ZP_07688793.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7] gi|157077842|gb|ABV17550.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A] gi|190901993|gb|EDV61740.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A] gi|300416931|gb|EFK00242.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1] gi|300529635|gb|EFK50697.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1] gi|300843656|gb|EFK71416.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1] gi|306906354|gb|EFN36869.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|308121826|gb|EFO59088.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7] gi|315061895|gb|ADT76222.1| ATP-dependent RNA helicase [Escherichia coli W] gi|323377524|gb|ADX49792.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11] Length = 444 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|82545029|ref|YP_408976.1| ATP-dependent RNA helicase SrmB [Shigella boydii Sb227] gi|187731766|ref|YP_001881357.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94] gi|81246440|gb|ABB67148.1| ATP-dependent RNA helicase [Shigella boydii Sb227] gi|187428758|gb|ACD08032.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94] gi|320175854|gb|EFW50935.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae CDC 74-1112] gi|320186377|gb|EFW61111.1| ATP-dependent RNA helicase SrmB [Shigella flexneri CDC 796-83] gi|332092586|gb|EGI97658.1| ATP-dependent RNA helicase srmB [Shigella boydii 3594-74] Length = 444 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|195147728|ref|XP_002014827.1| GL19380 [Drosophila persimilis] gi|194106780|gb|EDW28823.1| GL19380 [Drosophila persimilis] Length = 437 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 211/382 (55%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + G P+++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ Sbjct: 11 WNESGFPPEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 70 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 ++ R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q Sbjct: 71 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQG 130 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P Sbjct: 131 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 190 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++++ ++L+ P + + + Sbjct: 191 TNLKPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSMG 250 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E E V + K+ L++ L + D IIF NQKK L LEK G++ Sbjct: 251 KPTERTEQ-IVYMMGENDKRKKLMEILSRKIDPPV--IIFVNQKKGADVLAKGLEKLGYN 307 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 C +HG Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y H Sbjct: 308 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTH 367 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG+ G A + V K+D Sbjct: 368 RIGRTGRAGKTGCAISFVTKDD 389 >gi|320176023|gb|EFW51092.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae CDC 74-1112] Length = 421 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEVLEKKGFHDCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|198427069|ref|XP_002129152.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Ciona intestinalis] Length = 452 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 149/394 (37%), Positives = 228/394 (57%), Gaps = 12/394 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +FADLGL+ ++ + + G+ KPTPIQ IP +LQ D G ++TG+GKTA+F LP+L Sbjct: 6 NFADLGLNEWIIQHLGNLGFNKPTPIQYNCIPPILQGKDCFGCSKTGSGKTAAFALPVLQ 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + + L+L PTRELA Q+++ F GK N+ ++++GG+ Q +L++ Sbjct: 66 KLSEDPYGIF---CLVLTPTRELAYQISEQFTLIGKPINIRTSVIVGGMDIIQQAYELQK 122 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM---GFIPYIQNITSLVPFTR 178 ++I TPGR+ D + NN++ LV+DEADR+LD F + I S +P R Sbjct: 123 KPHIVIATPGRLADLLRSNE---NNVKFLVLDEADRLLDKLDGDFTNDLNLIFSSLPKER 179 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV--ATYAQYSKKCALLQ 236 QTLLFSAT+TD L +V E ++P + + ST + ++ ++ + + + + Sbjct: 180 QTLLFSATLTDTLNEVKELSTKSPFFWQSDNKVSTVDNLDQRYILLPEHIRDGYLVYICK 239 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 LL+ Q T ++ +IF KN L L+K GF +H + QR R+ LS FK Sbjct: 240 DLLEKQPT-RSIMIFTKTCKNCQVLGMLLQKAGFQCVVLHSLMKQRERLTALSRFKSSNT 298 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +L+VA+D+AARGLDIP V V N +VP A+NYIHR+GRT RAGR G + TLV + DI Sbjct: 299 RLLVATDVAARGLDIPVVQVVINHNVPGLAKNYIHRVGRTARAGRSGISITLVTQFDIHR 358 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 + +IE+ I K+ D + L K+++ + Sbjct: 359 VQSIEEHINTKLKEYEVDEREVLKILTKVNVMKR 392 >gi|331655464|ref|ZP_08356457.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718] gi|331046785|gb|EGI18869.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718] Length = 421 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTCGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|307105200|gb|EFN53450.1| hypothetical protein CHLNCDRAFT_36420 [Chlorella variabilis] Length = 421 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 134/337 (39%), Positives = 193/337 (57%), Gaps = 13/337 (3%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL----EKGRARVRMPRTL 76 + P+PIQ + +PL L D+ GIA TG+GKT +F LP L + E G A + P L Sbjct: 23 FQHPSPIQAQCLPLALSGRDLVGIAATGSGKTLAFGLPALRHIRAQSEAGVATGKKPVAL 82 Query: 77 ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136 ++ PTRELA Q+ E+ G ++ + GG+P Q L +GA +++ TPGR+ D Sbjct: 83 VIAPTRELALQICAVLEEAGSQCGISTVCVYGGVPKREQVAALRKGAAIVVATPGRLEDL 142 Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSE 196 G ++ + LV+DEADRMLD+GF P+I+ I RQTL+FSAT ++K++ Sbjct: 143 LEDGACRLDEVSYLVLDEADRMLDLGFEPHIRAIAGKTRADRQTLMFSATWPPAIRKLAS 202 Query: 197 NFLQNPKRIEVNT-----PSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251 FL +P R+ + + S + IE + A+ + LLQ+ S+ IIF Sbjct: 203 EFLCHPVRVTIGSQDLAASHSVTQVIE--VIEDRARDGRLHELLQRYHASRSN--RVIIF 258 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 KK V + L+++G+ AIHG+I Q R + FK G + L+VA+D+AARGLDI Sbjct: 259 VLYKKEAVRVEQLLQRKGWKAAAIHGDISQVQRSSAVEQFKSGAVPLLVATDVAARGLDI 318 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 PDV V N+ P E+Y+HRIGRTGRAG+ GKA T Sbjct: 319 PDVEAVLNYSFPLTTEDYVHRIGRTGRAGKTGKAHTF 355 >gi|292489103|ref|YP_003531990.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430] gi|292900225|ref|YP_003539594.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946] gi|291200073|emb|CBJ47199.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946] gi|291554537|emb|CBA22120.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430] gi|312173260|emb|CBX81515.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158] Length = 442 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 133/353 (37%), Positives = 203/353 (57%), Gaps = 4/353 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ ++ + G+ +PT IQ + IP L+ DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD + K+ L +A + GG+ F + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTRLDIATITGGVAFMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV++ T GR+L + +E L++DEADRMLDMGF I+ I++ + +QTL Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTL 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ E ++ +E L P IE + + I+ + K ALL LL+ Sbjct: 186 LFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRA-DDIKHKTALLLHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + ++F +++ V +C L + G + + G + Q R + + +G + ++V Sbjct: 245 -QPEVTRAVVFVRKRERVHEVCGWLREAGINSSYLEGELVQAKRNEAIKRVVDGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+AARG+DI DV HV NFD+P ++ Y+HRIGRTGRAG+ G A +LV D Sbjct: 304 ATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHD 356 >gi|71145379|gb|AAZ25852.1| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H] Length = 430 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 213/368 (57%), Gaps = 4/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F L +++ ++ GY KPT IQ IP + DV A TGTGKTA+F+LP+ Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA Q+ ++ E+ + + ++ GG+ + + L Sbjct: 75 LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTS 134 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+L+ TPGR+L++ + IEILV+DEADRMLD+GF I I + + +QT+ Sbjct: 135 TTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTM 194 Query: 182 LFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ + +Q +E L P +E + PS + + H ++ + K LL L+ Sbjct: 195 LFSATLESPGVQLFAEEVLNEPVFLE-SKPSRKEKAVIHQWLHLADDANHKLNLLVNTLK 253 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ ++ ++F N+++ V L L + + G + Q R K + FK+G ++++V Sbjct: 254 -QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVLV 312 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI D+ HV NFD+P + + YIHRIGRTGRAG+ G A +LV D+ I I Sbjct: 313 ATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGKI 372 Query: 361 EKLIEKKV 368 E+ ++++ Sbjct: 373 ERYTKERL 380 >gi|327443709|gb|EGE90363.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2] Length = 560 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADLG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110 Query: 63 L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QV+ + V + GG+ +E+Q Sbjct: 111 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 170 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ P Sbjct: 171 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 230 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232 +RQT+LFSATM + ++ + L+ P + +T ++ +T + + A K Sbjct: 231 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 287 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ ++LQ+ D K IIFC K+ L L+ +GF AIHG++ Q +R K L F+ Sbjct: 288 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKPRAIHGDLTQVAREKALKKFR 346 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV Sbjct: 347 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 406 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 D+ KLI K LN +LS P+E + H Sbjct: 407 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 434 >gi|33593906|ref|NP_881550.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis Tohama I] gi|33563980|emb|CAE43244.1| probable ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|332383325|gb|AEE68172.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis CS] Length = 462 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 143/362 (39%), Positives = 205/362 (56%), Gaps = 10/362 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 G+ + TPIQ +++PL+L+ D+ A+TG+GKTA+F L +L L+ R P+ L+L Sbjct: 23 GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNRL---APQALVLC 79 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA + + N+ V L GG Q + L RG +++ TPGRI DH Sbjct: 80 PTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLA 139 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG L ++ + LV+DEADRM+DMGF I I S P RQTLLFSAT D ++K+S F Sbjct: 140 RGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARF 199 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 L+NP I+V + + F Q A L + T+ FCN K Sbjct: 200 LRNPAEIKVEAQHDASRIEQLFFEIDEGQRLDAVATLLAHFRPASTLA----FCNTKIRS 255 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 +L L QG S A++G+++QR R +IL F + ++VA+D+AARGLDI ++G V Sbjct: 256 HDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSL 378 N DV E ++HRIGR+GR + G A +L + E+++ + IE+ + W DL SL Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKW--ADLGSL 373 Query: 379 NP 380 P Sbjct: 374 RP 375 >gi|242808610|ref|XP_002485202.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus ATCC 10500] gi|218715827|gb|EED15249.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus ATCC 10500] Length = 680 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 204/363 (56%), Gaps = 22/363 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + L ++ + A Y PTP+Q +IP+V+ D+ AQTG+GKT F+ P+L+ Sbjct: 191 FTNPPLDDHLIANIALARYTTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 250 Query: 63 LEK----------------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106 + GR R P +LIL PTREL +Q+ D K+ + ++ Sbjct: 251 AFQTGPSAAPAPAAGGNFYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVV 310 Query: 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166 GG +Q +++ERG D+L+ TPGR++D RG++ + NI+ LV+DEADRMLDMGF P Sbjct: 311 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 370 Query: 167 IQNITSLVPFT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV 222 I+ I RQTL+FSAT ++Q ++ +FL++ + V ST+E I Sbjct: 371 IRRIVEGEDMPQVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQRI- 429 Query: 223 ATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 Y + K ++L +L + T +IF K+ +LC L Q F AIHG+ QR Sbjct: 430 -EYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQR 488 Query: 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH 342 R + L F+ G ++VA+ +AARGLDIP+V HV N+D+P ++Y+HRIGRTGRAG Sbjct: 489 ERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 548 Query: 343 GKA 345 G A Sbjct: 549 GIA 551 >gi|210623599|ref|ZP_03293925.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275] gi|210153469|gb|EEA84475.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275] Length = 371 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDF DL + ++ + +G KPTP+Q + I ++ DV +QTGTGKT +F++P L Sbjct: 1 MDFKDLNIKEDIIDILKKSGITKPTPVQEECIGIIKDGRDVIAQSQTGTGKTLAFLIPTL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + K + V LIL PTRELA Q+++ EK + L + GG ++Q KL+ Sbjct: 61 EKINKNKKDVS---ALILTPTRELALQISNEAEKLAEPLGLNILSAYGGKDIKSQVNKLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++I TPGR+LDH +R + + N++I ++DEAD+ML MGF I I RQ+ Sbjct: 118 GNIHLVIATPGRLLDHLDRKTISLKNLDIFILDEADQMLLMGFKNEIDAILKETNKKRQS 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY--AQYSKKCALLQQL 238 L FSATM +++K++ + +P IE+ + T E I V T ++ C +L Sbjct: 178 LFFSATMDSQVKKLAYRYTNDPAFIEIKSQEVTLEKINQSIVKTTDRRKFDSLCKVL--- 234 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 D IIFC K+ L + +G++ IH +I Q R +I+ NF+ Q Sbjct: 235 --DGDNPFMAIIFCRTKRRADKLEEDMGSRGYNCEKIHSDISQAKRERIMKNFRNMKTQY 292 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 ++A+D+A+RGLDI V H++N+D P AE+YIHRIGRTGRAG +G V ++ K ++ Sbjct: 293 LIATDVASRGLDITGVTHIYNYDFPETAEDYIHRIGRTGRAGENGDTCAFVTDKNTKILE 352 Query: 359 AIE 361 +E Sbjct: 353 DVE 355 >gi|150020730|ref|YP_001306084.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho melanesiensis BI429] gi|149793251|gb|ABR30699.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis BI429] Length = 514 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 218/370 (58%), Gaps = 11/370 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59 M+F D LS K + A+ + G+ KPTP+Q + IP++L + ++ A+TGTGKTA+F +P+ Sbjct: 1 MNFEDFNLSEKTLYAINEKGFEKPTPVQKRVIPILLNKEKNLIVQAKTGTGKTAAFGIPL 60 Query: 60 LTILE-KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + +LE KG + +IL PTRELA QV++ K L + + GG Q + Sbjct: 61 IELLESKGYVQ-----AIILTPTRELALQVSEEINSL-KRKRLKILPVYGGQSISRQIEH 114 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 L+RG D+++ TPGRILDH R + ++ +E ++DEAD MLDMGFI ++ I + Sbjct: 115 LKRGVDIVVGTPGRILDHLERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKSTSDEK 174 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 L+FSAT+ + +++ +++N + I++ T E ++ + K L ++ Sbjct: 175 IFLMFSATIPRRIIDLAKKYIKNYEVIKIADKQLTTNLTEQIYIEL--NENDKFEALCRI 232 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + +D G++FC K V N+ L ++G+ A+HG+ Q R ++L FKE I + Sbjct: 233 IDVEDDF-YGMVFCRTKVEVDNVSSKLIERGYDAEALHGDFSQYQRERVLKKFKEKRINI 291 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARG+DI + HV N+ +P E+Y+HR+GRTGRAGR G A T V ++ + + Sbjct: 292 LVATDVAARGIDISGLTHVINYSIPLNPEHYVHRVGRTGRAGREGVAITFVTPKEYRQLF 351 Query: 359 AIEKLIEKKV 368 I+K + K+ Sbjct: 352 RIKKFSKAKI 361 >gi|66800707|ref|XP_629279.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4] gi|74896763|sp|Q54CE0|DDX17_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx17; AltName: Full=DEAD box protein 17 gi|60462734|gb|EAL60936.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4] Length = 785 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 141/406 (34%), Positives = 227/406 (55%), Gaps = 10/406 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F ++ ++ AG+ PTPIQ + P+ L+ D+ G+A+TG+GKT +F+LP + Sbjct: 384 MQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSI 443 Query: 61 TILEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 + + +R P L+L PTRELA Q+ + K+G ++ + GG Q Sbjct: 444 VHIN-AQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVA 502 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L++G +++I TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 503 ALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPD 562 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTL+FSAT E+Q ++ +FL + ++ + + TA V + KK +L Sbjct: 563 RQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERML-S 621 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L S + I+F +K V +L L+ GF IHGN Q R +LS FK G + Sbjct: 622 FLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVP 681 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 +M+A+D+A+RGLDI D+ +V N+D PN E YIHRIGRT RAG G +++L+ ++ + Sbjct: 682 IMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLA 741 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKS 403 + + K++ + + +LS+L+ + + ++ +K +P P S Sbjct: 742 NELIKVLTEAKQKIPIELSNLS-----VTPSTSSNTKKFSPYPTYS 782 >gi|170039965|ref|XP_001847786.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167863566|gb|EDS26949.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 942 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 147/452 (32%), Positives = 242/452 (53%), Gaps = 24/452 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 +A G++ K + G+ KPTPIQ + IP V+ D+ GIA+TG+GKT +F+LPM Sbjct: 283 WAHCGVTRKEFEVLRKLGFEKPTPIQCQAIPAVMSGRDLIGIAKTGSGKTLAFILPMFRH 342 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + + P +I+ PTREL Q+ + +K+ K+ NL + GG Q +L+ Sbjct: 343 VLDQPPLEEAEGPIAIIMSPTRELCMQIGKDIKKFAKSLNLRAVCVYGGTGISEQIAELK 402 Query: 121 RGADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 RGA++++CTPGR++D N G++ + + +V+DEADRM DMGF P + I + Sbjct: 403 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRPD 462 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQT++FSAT +++ ++ L+ P I+V S + +E V + K L + Sbjct: 463 RQTVMFSATFPRQMEALARRILKKPVEIQVGGRSVVCKEVEQHVVVL--EEDAKFFKLLE 520 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 LL + + I+F ++++N L L K + ++HG IDQ R + +FK+G ++ Sbjct: 521 LLGLYQELGSIIVFVDKQENADILLKDLMKASYPCMSLHGGIDQFDRDSTIIDFKQGRVK 580 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 L++A+ +AARGLD+ + V N+D PN E+Y+HR GRTGRAG G A+T + E ++ Sbjct: 581 LLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTHEQGRYS 640 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-----------PQKSTGF 406 I + +E + DL L E Q +K + Q++ Sbjct: 641 GDIIRALELSGGTIPDDLRQL---WETYKTTQEEQGKKVHTGGGFSGKGFKFDEQEAAAV 697 Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQEN 438 + RKK QK+ + L++S+ L+QDI ++ Sbjct: 698 NERKK---MQKAALGLQDSDDDEDLEQDIDQH 726 >gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO] Length = 605 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68 A + KPTP+Q ++P+V D+ AQTG+GKT F+ P+L+ + G + Sbjct: 161 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 220 Query: 69 --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R P +I+ PTRELA Q+ D +K+ + ++ GG P Q +++ERG D+L Sbjct: 221 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 280 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182 + TPGR+ D RGK+ + N++ LV+DEADRMLDMGF P I++I T RQTL+ Sbjct: 281 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 340 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++Q ++ +FL + + V ST+E I + Q KK ALL L S Sbjct: 341 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 399 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + +IF K+ L L Q F AIHG+ Q R + L+ F+ G L+VA+ Sbjct: 400 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 457 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 +AARGLDIP+V HV N+D+P+ ++Y+HRIGRTGRAG G A E+ + + + Sbjct: 458 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 517 Query: 363 LI 364 ++ Sbjct: 518 IL 519 >gi|296121937|ref|YP_003629715.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM 3776] gi|296014277|gb|ADG67516.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM 3776] Length = 395 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 215/369 (58%), Gaps = 8/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DLGLS + AV G+ P+PIQ +PL L DV G A+TG+GKTA+FVLP I Sbjct: 8 FEDLGLSETTLAAVNKMGFATPSPIQAAFVPLALSGKDVIGQARTGSGKTAAFVLP---I 64 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 LE+ A P+ L+L PTREL+ Q+A+ + + L +GG Q L++G Sbjct: 65 LERVDAEKGYPQALVLTPTRELSQQIAEEASRLSLKHPLRSVCCVGGRNIRPQITDLKKG 124 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 A ++I TPGRI+D RG+L + ++++V+DEADRMLD+GF P I+ I P RQTLL Sbjct: 125 AQLVIGTPGRIIDLMQRGELDTSRLKMVVLDEADRMLDIGFRPDIERILRKCPTERQTLL 184 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SAT+ + ++++ ++ +P+R++V+ + ++ F Q K L++ L SQ Sbjct: 185 LSATLPAPVARLAQKYMNDPERVDVSHIGADSQNSITQFYVPVDQDRKFRTLIRVL--SQ 242 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + ++F K+ + + + IHG++ Q R +LS F++G ++L++A+ Sbjct: 243 EKPQQVLVFTRTKRGAEEVYRKFSGRLPRIGFIHGDLSQNLREGVLSRFRDGRLRLLIAT 302 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG---RHGKAFTLVAKEDIKHIDA 359 D+ RG+DI + H+ N+DVP ++Y+HRIGRTGR + G A T V +E+ + Sbjct: 303 DVMGRGIDISGISHIVNYDVPMDCDDYVHRIGRTGRLSSTEKIGSAITFVTREEGDQLTN 362 Query: 360 IEKLIEKKV 368 IE + K++ Sbjct: 363 IEIRVNKEL 371 >gi|212543663|ref|XP_002151986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224] gi|210066893|gb|EEA20986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224] Length = 554 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 207/373 (55%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ KPT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 127 FDEAGFPNYVLSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P LIL PTRELA Q+ K+G++ + + GG+P Q Sbjct: 187 INAQPLLSPGDG----PIVLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQI 242 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 243 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 302 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E+++++ +FL + ++ + + +A V + + K+ +++ Sbjct: 303 DRQTCMWSATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 362 Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + KN +IF K+ ++ L + G+ +IHG+ Q R +L FK G Sbjct: 363 HLEKIMEDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGK 422 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A T ++ K Sbjct: 423 SPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 482 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 483 QARDLVTILSEAK 495 >gi|160380641|sp|A6ZP47|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1 gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789] gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a] gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291] gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13] gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3] Length = 604 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68 A + KPTP+Q ++P+V D+ AQTG+GKT F+ P+L+ + G + Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219 Query: 69 --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R P +I+ PTRELA Q+ D +K+ + ++ GG P Q +++ERG D+L Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182 + TPGR+ D RGK+ + N++ LV+DEADRMLDMGF P I++I T RQTL+ Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++Q ++ +FL + + V ST+E I + Q KK ALL L S Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 398 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + +IF K+ L L Q F AIHG+ Q R + L+ F+ G L+VA+ Sbjct: 399 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 +AARGLDIP+V HV N+D+P+ ++Y+HRIGRTGRAG G A E+ + + + Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516 Query: 363 LI 364 ++ Sbjct: 517 IL 518 >gi|6324778|ref|NP_014847.1| Ded1p [Saccharomyces cerevisiae S288c] gi|118411|sp|P06634|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD box protein 1 gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae] gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae] gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c] Length = 604 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68 A + KPTP+Q ++P+V D+ AQTG+GKT F+ P+L+ + G + Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219 Query: 69 --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R P +I+ PTRELA Q+ D +K+ + ++ GG P Q +++ERG D+L Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182 + TPGR+ D RGK+ + N++ LV+DEADRMLDMGF P I++I T RQTL+ Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++Q ++ +FL + + V ST+E I + Q KK ALL L S Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 398 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + +IF K+ L L Q F AIHG+ Q R + L+ F+ G L+VA+ Sbjct: 399 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 +AARGLDIP+V HV N+D+P+ ++Y+HRIGRTGRAG G A E+ + + + Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516 Query: 363 LI 364 ++ Sbjct: 517 IL 518 >gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group] gi|75326432|sp|Q75HJ0|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName: Full=OsPL10a gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group] gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa Japonica Group] gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group] gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group] Length = 637 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 203/362 (56%), Gaps = 23/362 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L + + YVKPTP+Q IP+ + D+ AQTG+GKTA+F P+++ Sbjct: 176 FAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISG 235 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + R +R P LIL PTREL+ Q+ + K+ + V + GG P Q Sbjct: 236 IMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQ 295 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG ++L+ TPGR++D R ++ + ++ L +DEADRMLDMGF P I+ I + Sbjct: 296 LRELERGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMD 355 Query: 176 F----TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT E+Q+++ +FL + + V S+ + I + + K Sbjct: 356 MPPRGVRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRV--EFVLEADK 413 Query: 232 CALLQQLLQSQDTMKNG--------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 + L LL +Q NG ++F K+ L + L GF +IHG+ Q+ Sbjct: 414 RSYLMDLLHAQKA--NGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQE 471 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G Sbjct: 472 REYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSG 531 Query: 344 KA 345 A Sbjct: 532 LA 533 >gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16] gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16] Length = 403 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 210/365 (57%), Gaps = 5/365 (1%) Query: 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK 65 + L P ++ A+ + GY +PT IQ + IP L D+ A TGTGKTA+FVLP L L+ Sbjct: 1 MELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQYLQD 60 Query: 66 GRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124 R P R LIL PTRELA QVAD K+ L + + GG+ ++ L + D Sbjct: 61 FPRRKPGPARILILTPTRELAMQVADQARALAKHTKLNIFTITGGVQYQEHADILGKTQD 120 Query: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 +++ TPGR++++ N + IE LV+DEADRMLDMGF P + +++ + +QTLLFS Sbjct: 121 IVVATPGRLMEYINAERFDCRAIEWLVLDEADRMLDMGFGPTVDRLSNECRWRKQTLLFS 180 Query: 185 ATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQD 243 AT+ + ++ + + L++P I+ + I + + K LL++++ Q Sbjct: 181 ATLEGKGVEGFTADLLKDPADIDAEPSRRERKKIAQWY-HRADDMNHKLELLKKIITDQ- 238 Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 + I+F ++ + L LEK I G + Q R ++ F++GT+ +++A+D Sbjct: 239 -AERSIVFLKTRERLGELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATD 297 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 +AARG+D+PDV HV N+D+P A+ Y+HRIGRT RAG+ G A +LV D +D + + Sbjct: 298 VAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMLDRVARY 357 Query: 364 IEKKV 368 +++ + Sbjct: 358 VKEDI 362 >gi|161407972|ref|YP_270752.2| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H] Length = 417 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 213/368 (57%), Gaps = 4/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F L +++ ++ GY KPT IQ IP + DV A TGTGKTA+F+LP+ Sbjct: 2 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 61 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA Q+ ++ E+ + + ++ GG+ + + L Sbjct: 62 LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTS 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+L+ TPGR+L++ + IEILV+DEADRMLD+GF I I + + +QT+ Sbjct: 122 TTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTM 181 Query: 182 LFSATM-TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ + +Q +E L P +E + PS + + H ++ + K LL L+ Sbjct: 182 LFSATLESPGVQLFAEEVLNEPVFLE-SKPSRKEKAVIHQWLHLADDANHKLNLLVNTLK 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+ ++ ++F N+++ V L L + + G + Q R K + FK+G ++++V Sbjct: 241 -QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVLV 299 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI D+ HV NFD+P + + YIHRIGRTGRAG+ G A +LV D+ I I Sbjct: 300 ATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGKI 359 Query: 361 EKLIEKKV 368 E+ ++++ Sbjct: 360 ERYTKERL 367 >gi|24584994|ref|NP_609888.2| CG10333 [Drosophila melanogaster] gi|22946759|gb|AAF53680.2| CG10333 [Drosophila melanogaster] gi|60677727|gb|AAX33370.1| RH55640p [Drosophila melanogaster] Length = 822 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%) Query: 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 PK + ++D GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ ++ Sbjct: 402 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 461 Query: 69 RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q +L G Sbjct: 462 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 521 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P T Sbjct: 522 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 581 Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217 RQT++F+ATM +++++ +L+ P + + + E Sbjct: 582 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 641 Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 E V + K+ L++ L + D IIF NQKK L LEK G++ C +HG Sbjct: 642 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 698 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y HRIGRTG Sbjct: 699 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 758 Query: 338 RAGRHGKAFTLVAKED 353 RAG+ G A + V K+D Sbjct: 759 RAGKTGCAISFVTKDD 774 >gi|195344854|ref|XP_002038991.1| GM17282 [Drosophila sechellia] gi|194134121|gb|EDW55637.1| GM17282 [Drosophila sechellia] Length = 822 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%) Query: 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 PK + ++D GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ ++ Sbjct: 402 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 461 Query: 69 RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q +L G Sbjct: 462 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 521 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P T Sbjct: 522 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 581 Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217 RQT++F+ATM +++++ +L+ P + + + E Sbjct: 582 TEEAEDETKLMENFYSKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 641 Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 E V + K+ L++ L + D IIF NQKK L LEK G++ C +HG Sbjct: 642 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 698 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y HRIGRTG Sbjct: 699 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 758 Query: 338 RAGRHGKAFTLVAKED 353 RAG+ G A + V K+D Sbjct: 759 RAGKTGCAISFVTKDD 774 >gi|317480121|ref|ZP_07939231.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] gi|316903668|gb|EFV25512.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] Length = 405 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 210/346 (60%), Gaps = 7/346 (2%) Query: 26 PIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELA 85 PIQ K+IP++L+ D+ +AQTGTGKTA+++LP+L L +G +++ PTRELA Sbjct: 3 PIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKLSEGGHPADAINCIVMAPTRELA 62 Query: 86 AQVADNFEKYGKNYNLTVALLIGG---IPFEAQNKKLERGADVLICTPGRILDHFNRGKL 142 Q+ E + ++ + GG + FE Q + L GADV+I TPGR++ H + G + Sbjct: 63 QQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLGADVVIATPGRLIAHLSLGYV 122 Query: 143 LMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNP 202 ++ + ++DEADRMLDMGF I I +P RQT++FSATM ++Q+++ N L NP Sbjct: 123 DLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSATMPAKIQQLAGNILNNP 182 Query: 203 KRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLC 262 +++ + ++ +V Q K +++ L +++T + IIF + K V + Sbjct: 183 AEVKLAVSKPAEKIVQAAYVCYENQ---KLGIIRSLF-AEETPERVIIFASSKLKVKEVT 238 Query: 263 HSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDV 322 +L++ +V +H +++Q R +++ FK G I ++VA+D+ ARG+DI D+ V N+DV Sbjct: 239 KALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINYDV 298 Query: 323 PNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 P+ +E+Y+HRIGRT RA G A T V++++ + IEK +++ + Sbjct: 299 PHDSEDYVHRIGRTARANNDGVAITFVSEKEQGNFKNIEKFLDRDI 344 >gi|296107675|ref|YP_003619376.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99 Alcoy] gi|295649577|gb|ADG25424.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99 Alcoy] Length = 435 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 138/349 (39%), Positives = 212/349 (60%), Gaps = 7/349 (2%) Query: 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84 TPIQ++++P++L+ D+ A+TG+GKTA+F L +L L+ V+ L+L PTREL Sbjct: 2 TPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLLNNLKISFFAVQ---ALVLCPTREL 58 Query: 85 AAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLL 143 A QV+ + N+ + L GGIP + Q L GA +++ TPGRIL H L Sbjct: 59 AEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGSLRHGAHIIVGTPGRILKHLKNASLD 118 Query: 144 MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPK 203 ++ ++ LV+DEADRMLDMGF I+NI S+ P RQTLLFSAT +E++++S+ F+++PK Sbjct: 119 LSQVKALVLDEADRMLDMGFFDDIKNIISICPKQRQTLLFSATYPEEIKRLSKQFMKDPK 178 Query: 204 RIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCH 263 + V TP + +H + ++ ++K LL+ LL + + +IFCN K+ V + Sbjct: 179 EVHVVTPPEEIDIEQHFY--EVSRQAQKFPLLKSLLLHYRPV-SVLIFCNTKQQTVEVTD 235 Query: 264 SLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP 323 L +GFS A++G+++Q R + F + ++VA+D+AARGLDI ++ V NFD+ Sbjct: 236 QLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSAVINFDLA 295 Query: 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372 + +IHRIGRTGRAG G A ++V D + I AIE + W N Sbjct: 296 FDHDIHIHRIGRTGRAGSKGIALSIVTPADAQRICAIEDNYPHPIHWGN 344 >gi|262196937|ref|YP_003268146.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365] gi|262080284|gb|ACY16253.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM 14365] Length = 908 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 205/354 (57%), Gaps = 8/354 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LGL P+++ A+ + GY +P P+Q ++ DV ++TG+GKTA F +P++ Sbjct: 64 FAELGLQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVVQH 123 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 ++ A + + LIL PTRELA QV+ + K L + + GG P + Q L G Sbjct: 124 ID---AASKGAQALILAPTRELALQVSREIAQLAKPKGLHIEPIYGGAPIKPQMDALAAG 180 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--TRQT 180 A V+ TPGR+LDH R L NI +L++DE D ML MGF I+ I +P RQT Sbjct: 181 AQVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQT 240 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSAT+ DE+Q+++ + +P+ I ++T + + + I+H + + L + Sbjct: 241 VLFSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLRAE 300 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S D+ IIFCN +++ + L+ QG+ AI ++ QR R +++ ++ + +V Sbjct: 301 SPDS---AIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLV 357 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 A+D+AARG+DI D+ HV N+ P+ E Y+HR GRTGRAG+ G A +LV ++ Sbjct: 358 ATDVAARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLVGPREL 411 >gi|262168988|ref|ZP_06036682.1| ATP-dependent RNA helicase [Vibrio cholerae RC27] gi|262022687|gb|EEY41394.1| ATP-dependent RNA helicase [Vibrio cholerae RC27] Length = 448 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 212/389 (54%), Gaps = 12/389 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL +++ + + + T IQ + IPL + D+ ++TG+GKT +FVLPML Sbjct: 1 MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 K +A + PR LIL PTRELA QV + T L+ GG F Q K L Sbjct: 61 HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 RG ++ TPGR+ DH + L + +E LV+DEADRMLD+GF ++ I + R Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QTL+FSAT+ ++ ++ L PKRI + S + I +H ++ + + K ALL Sbjct: 181 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDH--KEALLD 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++L + + IIF + + L L K A+ GN++Q R I+ F+ Sbjct: 239 RILADAE-YRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERAVF 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++V +D+A+RGLDIP V HV NFD+P E Y+HR+GRTGRAG G A +LV +D + Sbjct: 298 KILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWES 357 Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380 +E +++++ + L G L P Sbjct: 358 FKRVEAFLQQEIQFEVLAGLEGKFKGLKP 386 >gi|255950466|ref|XP_002566000.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255] gi|211593017|emb|CAP99391.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255] Length = 552 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 207/373 (55%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ PT IQ + P+ L DV GIA+TG+GKT S+ LP + Sbjct: 128 FDEAGFPAYVLSEVKAQGFDAPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVH 187 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 188 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 244 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 303 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT ++++++ +FL + ++ V + +A V A + K+ +++ Sbjct: 304 DRQTCMWSATWPKDVRQLASDFLSDYIQVNVGSTDLSANHRITQIVEVVADFEKRDKMIK 363 Query: 237 QLLQ-SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + +D IIF K+ ++ L + G+ +IHG+ Q R +L+ FK+G Sbjct: 364 HLEKIMEDRSNKCIIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKQGK 423 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRT RAG G A T ++ K Sbjct: 424 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTARAGAKGTAITFFTTDNSK 483 Query: 356 HI-DAIEKLIEKK 367 D I L E K Sbjct: 484 QARDLITILTEAK 496 >gi|284921218|emb|CBG34284.1| ATP-independent RNA helicase [Escherichia coli 042] Length = 457 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 L P + + + GY+ TP+Q +P +L DV A+TG+GKTA+F L +L ++ Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126 A + + L+L PTRELA QVA + + N + L GG PF Q L+ ++ Sbjct: 67 ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 + TPGR+LDH +G + ++ + LV+DEADRMLDMGF I ++ P +RQTLLFSAT Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246 + + +S ++P IE+++ + IE F T ++ K LLQ+LL S Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242 Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306 + ++FCN KK+ +C +L + G S ++HGN++QR R + L F G+ +++VA+D+AA Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAA 302 Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 RGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + I +++ Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 Query: 367 KVDWLNGDLSSLNPPLE 383 K++W ++S PLE Sbjct: 363 KLNWQTPPVNSSIVPLE 379 >gi|219872069|ref|YP_002476444.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165] gi|219692273|gb|ACL33496.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165] Length = 441 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 212/366 (57%), Gaps = 4/366 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F +L LSP+++ A+ GY +PT IQ +TIP ++ DV G A TGTGKTA+F+LP L Sbjct: 7 FEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPALQH 66 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVA+ E+ + +L +A + GG+ ++ + Sbjct: 67 LLDHPRRKPGPPRILILTPTRELAMQVAEQAEELTQFTSLKIATITGGVAYQNHGEVFNT 126 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR+ + ++EIL+ DEADRML MGF + I + + + T Sbjct: 127 NQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKYTW 186 Query: 182 LFSATMTDEL-QKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ EL +E L +P +I+ + I+ + K LL +L+ Sbjct: 187 LFSATLEGELLVDFAERILNDPVQIDAEPSRRERKKIQQWYYHA-DNLEHKTKLLARLI- 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+ ++ I+F ++++V L +L K+G + G + Q R + ++ K+G + ++V Sbjct: 245 SEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVNVLV 304 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+DI DV V NFD+P A+ Y+HRIGRT RAG+ G A +LV D K + I Sbjct: 305 ATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLVEAHDYKLLGKI 364 Query: 361 EKLIEK 366 ++ E+ Sbjct: 365 KRYTEE 370 >gi|110834947|ref|YP_693806.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2] gi|110648058|emb|CAL17534.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2] Length = 459 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 222/380 (58%), Gaps = 12/380 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 FA L L+P+++ A LDA GYV TP+Q +++PL+L+ HDV A TG+GKTA+F L +L Sbjct: 6 FASLPLTPEML-ANLDALGYVTMTPVQAQSLPLLLKGHDVIAQASTGSGKTAAFGLGLLH 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKLE 120 L R + L+L PTRELA QVA + + N+ V L GG P Q LE Sbjct: 65 PLNP---RYYGCQALVLCPTRELADQVAVEIRRLARGPGNIKVLTLCGGQPIGPQIGSLE 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA +++ TPGR+L H ++G L ++ + LV+DEADRMLDMGF I + P RQT Sbjct: 122 HGAQIVVGTPGRVLKHLSKGTLSLDGLNTLVLDEADRMLDMGFYDSIAEVIRQTPPRRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +++++E F+ NP+ +EV T ++ + + Q + A + Sbjct: 182 LLFSATYPPGIKQLAETFMSNPQHVEVETLHDNSQIEQRYYEVEPFQREEAVASAIACFR 241 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 ++FC K+ ++ + L +QG S ++ +++QR R ++L+ F ++ ++V Sbjct: 242 PVSC----VVFCVTKQQCQDVVNQLCRQGLSAMVLNSDLEQRERDEVLTLFANRSLSVLV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++ V N ++ + + +IHR+GRTGRAG G A LVA + + AI Sbjct: 298 ATDVAARGLDIDNLDMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAIAI 357 Query: 361 EKLIEKKVDWLNGDLSSLNP 380 E+L ++W L+SL P Sbjct: 358 EQLQGAPLNW--HPLNSLKP 375 >gi|331662753|ref|ZP_08363676.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143] gi|331061175|gb|EGI33139.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143] Length = 457 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 L P + + + GY+ TP+Q +P +L DV A+TG+GKTA+F L +L ++ Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126 A + + L+L PTRELA QVA + + N + L GG PF Q L+ ++ Sbjct: 67 ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 + TPGR+LDH +G + ++ + LV+DEADRMLDMGF I ++ P +RQTLLFSAT Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246 + + +S ++P IE+++ + IE F T ++ K LLQ+LL S Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242 Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306 + ++FCN KK+ +C +L + G S ++HGN++QR R + L F G+ +++VA+D+AA Sbjct: 243 SCVVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAA 302 Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 RGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + I +++ Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 Query: 367 KVDWLNGDLSSLNPPLE 383 K++W ++S PLE Sbjct: 363 KLNWQTPPVNSSIVPLE 379 >gi|302782315|ref|XP_002972931.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii] gi|300159532|gb|EFJ26152.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii] Length = 534 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 210/387 (54%), Gaps = 21/387 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+ V+ VL AG+ +PT IQ + P+ L+ D+ G+A+TG+GKT +++LP + Sbjct: 92 FAEASFPDYVLQEVLKAGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAYLLPAIVH 151 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L G P L+L PTRELA Q+ K+G + + + GG P Q Sbjct: 152 VNAQPYLAPGDG----PIVLVLAPTRELAVQIQQESAKFGSSSKIKSTCIYGGAPKGPQI 207 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L+RG +++I TPGR++D + + LV+DEADRMLDMGF P I+ I + Sbjct: 208 RDLQRGVEIVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRP 267 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS-----STAETIEHCFVATYAQYSKK 231 RQTL +SAT ++++++ FL +P ++ + + S S A+ +E V Y +Y K Sbjct: 268 DRQTLYWSATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVE--VVNDYEKYQKL 325 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 LL + + + IF K+ + L +G+ +IHG+ Q R +LS F Sbjct: 326 IKLLDEFMDGGKIL----IFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEF 381 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 K G +M A+D+AARGLD+ D+ +V N+D P E+Y+HRIGRTGRAG G A+T Sbjct: 382 KTGKSPIMTATDVAARGLDVKDIRYVINYDFPGSCEDYVHRIGRTGRAGAKGTAYTFFTV 441 Query: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSL 378 + KH + ++ + + +L S+ Sbjct: 442 SNAKHARELVSILSEAGQRITPELQSM 468 >gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis] gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis] Length = 523 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 217/369 (58%), Gaps = 7/369 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + + DLGL+ + A + + P+ IQ + IP+ LQ DV G+A+TG+GKT +F LP+L Sbjct: 64 LTWKDLGLNDTLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPIL 123 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L Sbjct: 124 HALLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLA 180 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + ++I TPGR++DH N + I+ LV+DEADR+L+M F + I ++P R+ Sbjct: 181 KKPHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERR 240 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 T LFSATMT +++K+ L++P ++EV+ T + ++ ++ +Y K L +L Sbjct: 241 TFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKY--KDVYLVHIL 298 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + +IFC+ N V L G + +HG + Q R+ L+ FK ++ Sbjct: 299 -NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSIL 357 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +++D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR G+A T+V + DI+ Sbjct: 358 ISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQR 417 Query: 360 IEKLIEKKV 368 IE+L+ K++ Sbjct: 418 IEQLLGKQL 426 >gi|262066543|ref|ZP_06026155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium periodonticum ATCC 33693] gi|291379777|gb|EFE87295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium periodonticum ATCC 33693] Length = 528 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 212/372 (56%), Gaps = 16/372 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPML 60 +F +LGL K++ + GY PTPIQ TIP +L+ D+ G AQTGTGKTA+F LP++ Sbjct: 9 EFRELGLGEKILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII 68 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 E + ++L PTRELA QVA+ + + V + GG + Q K ++ Sbjct: 69 ENFEHSDH----IQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIK 124 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G DV++ TPGR++D R L +N+++ V+DEAD ML+MGF+ I+ I + ++ Sbjct: 125 TGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFVEDIEKILTFTNDDKRM 184 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL 238 L FSATM E+ K+++ ++ + + V + T + E + V ++ C ++ Sbjct: 185 LFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRII--- 241 Query: 239 LQSQDTMKN--GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 D K GIIFC K +V + L +G+ +HG+I Q R L FK I Sbjct: 242 ----DLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKI 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARG+DI D+ HV N+ +P E+Y+HRIGRTGRAG+ G A T + ++ + Sbjct: 298 NILVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRR 357 Query: 357 IDAIEKLIEKKV 368 + I+K ++K++ Sbjct: 358 LLQIQKAVKKEI 369 >gi|78485292|ref|YP_391217.1| ATP-dependent RNA helicase DbpA [Thiomicrospira crunogena XCL-2] gi|78363578|gb|ABB41543.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2] Length = 468 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 223/386 (57%), Gaps = 9/386 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F+ LGL P ++ + Y T IQ +++P +L+ DV +TG+GKTA+F L +L Sbjct: 10 LAFSTLGLHPDLLSNLKTLDYHFLTDIQAQSLPPILEGKDVIAQGKTGSGKTAAFGLGVL 69 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKL 119 L+ V+ L+L PTRELA QVA+ + + N+ V L GG+P Q L Sbjct: 70 QKLDVKNFNVQ---ALVLCPTRELADQVANEIRRLARQLQNIKVLTLCGGMPMGPQISSL 126 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++GA +++ TPGRI DH + +L + ++ILV+DEADRML+MGF P + I +P RQ Sbjct: 127 QQGAHIVVGTPGRIEDHLKKARLTLAEVKILVLDEADRMLEMGFQPSLDTIIDQLPQQRQ 186 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TLLFSAT +++ +S+ + P R+EV + + +H F + + AL LL Sbjct: 187 TLLFSATFPKQIEHISQRIMHQPVRVEVASRHDDSTITQH-FYQVDSTEQRLQALRLVLL 245 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q++ ++ ++FCN KK V + +L GFS A+HG+++QR R + L F +I ++ Sbjct: 246 QAKP--ESSVVFCNTKKEVQMVADTLRDAGFSALALHGDLEQRDRDQTLIQFANKSISIL 303 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKHID 358 VA+D+AARGLDI + V NF + + E ++HRIGRTGRAG G A + ++ KE K Sbjct: 304 VATDVAARGLDIEALDAVVNFHLAHDPEVHVHRIGRTGRAGSQGVACSFISDKESYKVAT 363 Query: 359 AIEKLIEKKVDWLNGDLSSLN-PPLE 383 E L + D S LN PPL+ Sbjct: 364 LAEYLGQDIQTEPLPDASLLNQPPLQ 389 >gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB] Length = 604 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68 A + KPTP+Q ++P+V D+ AQTG+GKT F+ P+L+ + G + Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219 Query: 69 --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R P +I+ PTRELA Q+ D +K+ + ++ GG P Q +++ERG D+L Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182 + TPGR+ D RGK+ + N++ LV+DEADRMLDMGF P I++I T RQTL+ Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++Q ++ +FL + + V ST+E I + Q KK ALL L S Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 398 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + +IF K+ L L Q F AIHG+ Q R + L+ F+ G L+VA+ Sbjct: 399 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 +AARGLDIP+V HV N+D+P+ ++Y+HRIGRTGRAG G A E+ + + + Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516 Query: 363 LI 364 ++ Sbjct: 517 IL 518 >gi|304409763|ref|ZP_07391383.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307304119|ref|ZP_07583872.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304352281|gb|EFM16679.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306913017|gb|EFN43440.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 451 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 209/370 (56%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L +++ ++ G +PT IQ + +P+ L D+ ++TG+GKT +F+LP L Sbjct: 1 MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + R+ R PR LIL PTRELA QV N ++GG F Q K L Sbjct: 61 QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 + ++ TPGRI DH + L +N +E+LV+DEADRMLD+GF P ++ I R Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180 Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QTL+FSAT+ DE+ ++ L+NP + + S I + F+ + + K ALL Sbjct: 181 QTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDH--KEALLA 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +LL+ + T K IIF + + L L +QGF+ A+ G++ Q +R +I+ F G Sbjct: 239 RLLKDE-THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQ 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++V +D+A+RGLD+ +V V NFD+P AE Y+HRIGRTGRAG G A +LV +D + Sbjct: 298 QVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357 Query: 357 IDAIEKLIEK 366 ++ + K Sbjct: 358 FKKVQVFLRK 367 >gi|285017902|ref|YP_003375613.1| ATP-independent RNA helicase [Xanthomonas albilineans GPE PC73] gi|283473120|emb|CBA15626.1| probable atp-independent rna helicase protein [Xanthomonas albilineans] Length = 458 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 144/381 (37%), Positives = 213/381 (55%), Gaps = 9/381 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF L LSP + + GY TP+Q +++P +L HDV A TG+GKTA+F L +L Sbjct: 3 DFDILSLSPALAPGIDALGYTTMTPVQAQSLPPILAGHDVIVQAPTGSGKTAAFGLGLLH 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ R + L+L PTRELA QV K N+ + +L GG+P Q LE Sbjct: 63 KLDPALVRAQ---ALVLCPTRELADQVGKQVRKLATGIANMKLVVLTGGMPLAPQLASLE 119 Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 V++ TPGRI + + L + + LV+DEADRMLDMGF I+ I RQ Sbjct: 120 AHDPQVVVGTPGRIQELARKRVLHLGGVRTLVLDEADRMLDMGFEEPIREIAGRCDKHRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT + ++ ++ L++P I V S E I+ F Y +K A+ LL Sbjct: 180 SLLFSATFPETIRALARELLKDPTEITVAGAESAPE-IDQQFFEVDPSYRQK-AVAGLLL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN +K V + SL++ GFS A+HG+++QR R ++L F + ++ Sbjct: 238 RFAP--ESSVVFCNTRKEVDEVASSLQQFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLD+ D+ V N+++P E Y HRIGRT RAG+HG A +LVA +++ A Sbjct: 296 VASDVAARGLDVEDLAAVLNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRELQRAQA 355 Query: 360 IEKLIEKKVDWLNGDLSSLNP 380 +E + W L++ P Sbjct: 356 LETEQSLPLRWSRAPLATARP 376 >gi|325091997|gb|EGC45307.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H88] Length = 544 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 211/374 (56%), Gaps = 13/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ +PT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 128 FDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 187 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 188 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 244 RDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 303 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT ++++++++FL + ++ + + +A V +++ K+ + + Sbjct: 304 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 363 Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L + + K+ +IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 364 HLDRIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 423 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A TL ++ Sbjct: 424 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 483 Query: 355 KHI-DAIEKLIEKK 367 K D + L E K Sbjct: 484 KQARDLVAILSESK 497 >gi|109899589|ref|YP_662844.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas atlantica T6c] gi|109701870|gb|ABG41790.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica T6c] Length = 412 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 140/406 (34%), Positives = 225/406 (55%), Gaps = 15/406 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F L L ++ AV D GY +PT IQ IP ++ D+ A TGTGKTA+F+LP+ Sbjct: 2 FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R R LIL PTRELA QV + + + ++ ++ GGI + E+ Sbjct: 62 LLDYPRRHPGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDRDTFEK 121 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+L+ TPGR+ +H + +IE L++DEADRMLDMGF + I++ + +Q++ Sbjct: 122 NLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRKQSM 181 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIE-HCFVATYAQYSKKCALLQQLL 239 LFSAT+ + + +++ L +P +E+ SS E + H ++ K ALL+ +L Sbjct: 182 LFSATLEGTGISRFAKDILNDP--VELEAASSRKEQGKIHQWLHIADDAKHKYALLKHIL 239 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 Q +++ ++F + + L LE+ GF+VC + G + Q R ++ F+ G ++++ Sbjct: 240 THQ--VESAVVFVKTRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKIL 297 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 +A+D+AARG+D+ + HV N+D+P A+ Y+HRIGRTGRAG G A +LV DI + Sbjct: 298 IATDVAARGIDVESISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLVEAHDIGIVPK 357 Query: 360 IEKLIE-----KKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIP 400 IE+ E + +D L PP ++ N A+K IP Sbjct: 358 IERYTEQPLKRRVIDELRPKNKEAKPPAKR---KISNKAKKAAGIP 400 >gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens AG86] gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens AG86] Length = 362 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 220/367 (59%), Gaps = 22/367 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH-DVCGIAQTGTGKTASFVLPM 59 M F++L LS V+ A+ + G+ KPT IQ+K +PL L ++ A+TG+GKTASF +P+ Sbjct: 1 MSFSELNLSENVLNAIKNKGFEKPTDIQMKVVPLFLNESCNIVAQARTGSGKTASFAIPL 60 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++++ +IL PTRELA QVAD + N NL + + GG Q K L Sbjct: 61 IELIDEDSG----IEAIILTPTRELAIQVADEIDSLKGNKNLKITKVYGGKAIHPQIKAL 116 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++ A++++ TPGR+LDH NRG L + N++ ++DEAD ML+MGFI ++ I + ++ Sbjct: 117 KK-ANIVVGTPGRVLDHINRGTLNLKNVKYFILDEADEMLNMGFIEDVEKILNACNKNKR 175 Query: 180 TLLFSATMTDELQKVSENFLQNPK----RIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 LLFSATM E+ +++ ++ + + +I N S E E+ ++ C +L Sbjct: 176 ILLFSATMPKEILNLAKKYMGDYEFVKAKINANIEQSYIEINEN------ERFETLCRIL 229 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 + D G++FC KK+ +L + L GF AIHG+++Q R K++ FK+ Sbjct: 230 K------DREFYGLVFCKTKKDTKDLANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKK 283 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 I++++A+D+ +RG+D+ D+ V N+ +P E+Y+HRIGRTGRAG+ G A +++ + + + Sbjct: 284 IKILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGMAISIINRREYR 343 Query: 356 HIDAIEK 362 + IE+ Sbjct: 344 KLKHIER 350 >gi|242019547|ref|XP_002430222.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212515318|gb|EEB17484.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] Length = 763 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 135/355 (38%), Positives = 208/355 (58%), Gaps = 7/355 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA G ++ + + Y PTPIQ + +P L D+ GIA+TG+GKTA+FV PML Sbjct: 271 FAYFGFDEALMKVIRKSEYTTPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFVWPMLIH 330 Query: 62 ILEKGRARV-RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I+++ + P LIL PTREL+ Q+ +K+GK YN+ V GG Q+K LE Sbjct: 331 IMDQKELKPGDGPIGLILAPTRELSQQIYSEAKKFGKVYNIQVICCYGGGSKWEQSKALE 390 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA++++ TPGR++D + + LV+DEADRM DMGF P +++I + V RQT Sbjct: 391 NGAEIVVATPGRMIDLIKMKATNLKRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQT 450 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT ++++++ L +P RI E + + Q +K L +++ Sbjct: 451 LLFSATFKKKVERLARVVLTDPIRIVQGDVGEANEDVIQNVLILPNQAAKFMWLTSHIVE 510 Query: 241 SQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 + NG +IF +K N + ++L+ + F V +HG++DQ R K+++ FK+ + + Sbjct: 511 ---FLSNGSLLIFVTKKVNAEEVANNLKLKEFDVLLLHGDMDQIERNKVITQFKKKEVSI 567 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 +VA+D+AARGLDIP + V N+D+ + + HRIGRTGRAG G A+TLV +D Sbjct: 568 LVATDVAARGLDIPHIKTVVNYDIARDIDTHTHRIGRTGRAGERGYAYTLVLNQD 622 >gi|126173892|ref|YP_001050041.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|125997097|gb|ABN61172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 451 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 209/370 (56%), Gaps = 7/370 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F D L +++ ++ G +PT IQ + +P+ L D+ ++TG+GKT +F+LP L Sbjct: 1 MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + R+ R PR LIL PTRELA QV N ++GG F Q K L Sbjct: 61 QRVISTRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 + ++ TPGRI DH + L +N +E+LV+DEADRMLD+GF P ++ I R Sbjct: 121 AKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRR 180 Query: 179 QTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QTL+FSAT+ DE+ ++ L+NP + + S I + F+ + + K ALL Sbjct: 181 QTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDH--KEALLA 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 +LL+ + T K IIF + + L L +QGF+ A+ G++ Q +R +I+ F G Sbjct: 239 RLLKDE-THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQ 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++V +D+A+RGLD+ +V V NFD+P AE Y+HRIGRTGRAG G A +LV +D + Sbjct: 298 QVLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDN 357 Query: 357 IDAIEKLIEK 366 ++ + K Sbjct: 358 FKKVQVFLRK 367 >gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23] Length = 608 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68 A + KPTP+Q ++P+V D+ AQTG+GKT F+ P+L+ + G + Sbjct: 164 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 223 Query: 69 --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R P +I+ PTRELA Q+ D +K+ + ++ GG P Q +++ERG D+L Sbjct: 224 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 283 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182 + TPGR+ D RGK+ + N++ LV+DEADRMLDMGF P I++I T RQTL+ Sbjct: 284 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 343 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++Q ++ +FL + + V ST+E I + Q KK ALL L S Sbjct: 344 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 402 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + +IF K+ L L Q F AIHG+ Q R + L+ F+ G L+VA+ Sbjct: 403 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 460 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 +AARGLDIP+V HV N+D+P+ ++Y+HRIGRTGRAG G A E+ + + + Sbjct: 461 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 520 Query: 363 LI 364 ++ Sbjct: 521 IL 522 >gi|289671300|ref|ZP_06492375.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 458 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 145/381 (38%), Positives = 215/381 (56%), Gaps = 9/381 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ L LSP + + GY TPIQ +++P +LQ DV A TG+GKTA+F L +L Sbjct: 3 EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ R + L+L PTRELA QV K N+ + +L GG+P Q LE Sbjct: 63 KLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119 Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 V++ TPGRI + + L + + LV+DEADRMLDMGF I+ I S RQ Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT D ++ ++ L++P I V + E I+ F Y +K A+ LL Sbjct: 180 SLLFSATFPDIIRTLAREILKDPVEITVEGADNAPE-IDQQFFEVDPTYRQK-AVAGLLL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN +K V + SL++ GFS A+HG+++QR R ++L F + ++ Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLD+ D+ V N+++P E Y HRIGRT RAG+HG A +LVA + + A Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARVQA 355 Query: 360 IEKLIEKKVDWLNGDLSSLNP 380 +E + + W L++ P Sbjct: 356 LEAAQGQPLKWSRAPLATARP 376 >gi|310657448|ref|YP_003935169.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium sticklandii DSM 519] gi|308824226|emb|CBH20264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium sticklandii] Length = 411 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 212/362 (58%), Gaps = 9/362 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF +LG++ ++ +L PT +Q+K+IP +L+ DV AQTGTGKT +F+LP Sbjct: 4 DFIELGITNELSERLLKLRIDTPTQVQVKSIPYILEGRDVIAQAQTGTGKTLAFLLP--- 60 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 ILEK + LI+ PTRELA Q+++ +K + + GG E Q KL++ Sbjct: 61 ILEKIDVDSEDTQALIISPTRELAIQISEEAQKLISVKGINILSAYGGQDVEKQLNKLKK 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGRILD R L ++ +++LV+DEAD+ML MGF+ + I S P +Q + Sbjct: 121 NIPLVVGTPGRILDLIRRESLNLSKLKMLVLDEADQMLHMGFLDEVDAIFSYTPSEKQVM 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 FSAT E++K+++ ++ P + V + T + I+ V T K+ AL + + Sbjct: 181 CFSATFNKEVKKLAKTYMNEPHYVSVKGQNVTLDEIDQIIVHT-TDRKKQEALCEMIDTQ 239 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 Q M I+FC K+ V L L ++G++ +HG++ Q R K++ +F+ IQL++A Sbjct: 240 QPFM--AIVFCRTKRRVTALYEDLSQKGYNCDQLHGDLSQAKREKVMKDFRNAKIQLLIA 297 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARG+D+ + H++N+D+ + YIHRIGRTGRAG G A T V KH ++E Sbjct: 298 TDVAARGIDVDGITHIYNYDMVLDTDTYIHRIGRTGRAGEKGTAVTFVTP---KHNASLE 354 Query: 362 KL 363 KL Sbjct: 355 KL 356 >gi|50419477|ref|XP_458265.1| DEHA2C13486p [Debaryomyces hansenii CBS767] gi|74659403|sp|Q6BU54|DED1_DEBHA RecName: Full=ATP-dependent RNA helicase DED1 gi|49653931|emb|CAG86342.1| DEHA2C13486p [Debaryomyces hansenii] Length = 630 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 143/356 (40%), Positives = 206/356 (57%), Gaps = 23/356 (6%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKG 66 L P +V V + + KPTP+Q ++P+V D+ AQTG+GKT F+ P+L+ G Sbjct: 163 LDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNG 222 Query: 67 RARVR-----------MPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 A V P L++ PTREL +Q+ D +K+ + +++ GG Q Sbjct: 223 PAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPSVVYGGADIGGQ 282 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 + LERG D+L+ TPGR+ D RG++ + +I+ LV+DEADRMLDMGF P I++I Sbjct: 283 IRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECD 342 Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQTL+FSAT E+Q ++ +FL+ + V ST+E I + Y + +K Sbjct: 343 MPGVEDRQTLMFSATFPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKIL--YVEDEEK 400 Query: 232 CALLQQLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 ++L LL + D NG IIF K+ NL L QGF AIHG+ Q R K L+ Sbjct: 401 KSVLLDLLSAND---NGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALA 457 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 FK GT ++VA+ +AARGLDIP+V H+ N+D+P+ ++Y+HRIGRTGRAG G A Sbjct: 458 AFKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIA 513 >gi|332088088|gb|EGI93213.1| ATP-dependent RNA helicase srmB [Shigella boydii 5216-82] Length = 442 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEAPRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|29427914|sp|Q921N6|DDX27_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName: Full=DEAD box protein 27 Length = 760 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 214/364 (58%), Gaps = 3/364 (0%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + F D+ LS ++ A+ G+ +PTPIQ IP+ L D+C A TGTGKTA+F LP+L Sbjct: 184 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 243 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + + R L+L PTREL QV ++ + ++T L +GG+ ++Q L Sbjct: 244 ERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D+LI TPGR++DH N +++IE+L++DEAD+MLD F ++ I + RQ Sbjct: 304 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQ 363 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA-QYSKKCALLQQL 238 T+LFSATMTDE++ ++ L+NP RI VN+ + A + F+ + + A++ L Sbjct: 364 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 423 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L T + ++F KK + L G V +HGN+ Q R++ L FK+ I + Sbjct: 424 LMRTFT-DHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDI 482 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V V NF +PN ++Y+HR+GRT RAGR G++ +LV +E+ K + Sbjct: 483 LVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 542 Query: 359 AIEK 362 I K Sbjct: 543 EIVK 546 >gi|194880138|ref|XP_001974373.1| GG21122 [Drosophila erecta] gi|190657560|gb|EDV54773.1| GG21122 [Drosophila erecta] Length = 816 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%) Query: 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 PK + ++D GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ ++ Sbjct: 396 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 455 Query: 69 RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q +L G Sbjct: 456 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 515 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P T Sbjct: 516 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 575 Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217 RQT++F+ATM +++++ +L+ P + + + E Sbjct: 576 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 635 Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 E V + K+ L++ L + D IIF NQKK L LEK G++ C +HG Sbjct: 636 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 692 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y HRIGRTG Sbjct: 693 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 752 Query: 338 RAGRHGKAFTLVAKED 353 RAG+ G A + V K+D Sbjct: 753 RAGKTGCAISFVTKDD 768 >gi|171685610|ref|XP_001907746.1| hypothetical protein [Podospora anserina S mat+] gi|170942766|emb|CAP68419.1| unnamed protein product [Podospora anserina S mat+] Length = 798 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 140/359 (38%), Positives = 203/359 (56%), Gaps = 3/359 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F ++ LS ++ + G+ KPTPIQ KTIP+ L DV G A TG+GKT +F++P+L Sbjct: 275 FLEMSLSRPILKGLNSVGFTKPTPIQSKTIPIALMGKDVVGGAVTGSGKTGAFLVPILER 334 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +V R +IL PTRELA Q K + ++ L +GG+ + Q ++L Sbjct: 335 LLYRSKKVATTRVVILAPTRELAIQCHAVGVKLASHTDIKFCLAVGGLSLKVQEQELRLR 394 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV+I TPGR +DH N + +EILV+DEADRML+ GF + I + +P +RQT+ Sbjct: 395 PDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTM 454 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240 LFSATMT + ++ L P RI+V++ TA + FV + K+ L + + Sbjct: 455 LFSATMTSSVDRLIRAGLNKPVRIQVDSQKKTASNLRQEFVRLRPGREKKRMGYLVHICK 514 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 + T + IIF QKK G S +HG+++Q R+ + F++G + ++ Sbjct: 515 TLYTERV-IIFFRQKKIAHETRIIFGLLGMSCAELHGSMNQAQRIASVEAFRDGKVNFLL 573 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 A+DLA+RGLDI V V N++ P E YIHRIGRT RAGR G A TL A+ D K + A Sbjct: 574 ATDLASRGLDIKGVDTVINYEAPQNLEIYIHRIGRTARAGRSGVALTLAAEPDRKVVKA 632 >gi|260581720|ref|ZP_05849517.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127] gi|260095313|gb|EEW79204.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127] Length = 415 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 214/368 (58%), Gaps = 10/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+DL L P V A+ G+ TPIQ ++P+ L DV G AQTGTGKT +F+ Sbjct: 11 FSDLSLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70 Query: 63 L---EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + PR LIL PTRELA Q++++ E K L AL GG ++ Q + + Sbjct: 71 LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177 ERG D+LI T GR++D+ +G + ++ I+++V+DEADRM D+GFI I+ + P Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 R T+LFSAT++ ++++++ + +P+ IE+ T I E F Y K ALL Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + I+F N K + L G V + G++ Q+ R+ +L F +G + Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNL 306 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL I DV HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E + Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366 Query: 357 IDAIEKLI 364 + AIE+ I Sbjct: 367 LPAIEEYI 374 >gi|225555683|gb|EEH03974.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus G186AR] Length = 544 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 211/374 (56%), Gaps = 13/374 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ +PT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 128 FDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 187 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 188 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 244 RDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 303 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT ++++++++FL + ++ + + +A V +++ K+ + + Sbjct: 304 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 363 Query: 237 QLLQSQDTMKNG--IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L + + K+ +IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 364 HLDRIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 423 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A TL ++ Sbjct: 424 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 483 Query: 355 KHI-DAIEKLIEKK 367 K D + L E K Sbjct: 484 KQARDLVAILSESK 497 >gi|320536466|ref|ZP_08036500.1| DEAD/DEAH box helicase [Treponema phagedenis F0421] gi|320146675|gb|EFW38257.1| DEAD/DEAH box helicase [Treponema phagedenis F0421] Length = 618 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 136/363 (37%), Positives = 208/363 (57%), Gaps = 7/363 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQ-RHDVCGIAQTGTGKTASFVLPM 59 + F D+GL V+ A+ G+ PTPIQI IP +L ++ A+TGTGKT +F LP+ Sbjct: 3 LSFKDIGLEDIVLQAIEAKGFETPTPIQILAIPRLLSGETNIIAKARTGTGKTGAFGLPL 62 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + L RA + PR L+L PTRELA QVA E + +A++ GG Q + L Sbjct: 63 IQEL---RADLGHPRALVLVPTRELAMQVAAEIESFRIETYPRIAVVYGGSSMSEQLRAL 119 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 ++GA++++ TPGRI+DH RG L + IE ++DEAD ML+MGFI I+ I S + Sbjct: 120 KKGAEIIVGTPGRIIDHIERGSLDLTQIEYFILDEADEMLNMGFISDIETIFSKANSNAR 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 L+FSATM + ++ +F+ + + I S ++ F + K AL++ + Sbjct: 180 ILMFSATMPKPILSIASDFMGDYE-IVAEELSEEPVSLTEQFYWFVREEDKIEALIRLID 238 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + D G++FC K + ++ LE++G+ A+HG+I Q R KILS F+ I+ + Sbjct: 239 ITPDFY--GLVFCQTKLDADSVAKELEERGYEAAALHGDIPQNQREKILSRFRSKKIRTL 296 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARG+DI + HV N+ +P Y HRIGRTGRAG G A + + + + ID Sbjct: 297 VATDVAARGIDIEGITHVVNYAIPYDGPTYTHRIGRTGRAGSTGTAVSFIRPNESRKIDY 356 Query: 360 IEK 362 + + Sbjct: 357 LAR 359 >gi|298704856|emb|CBJ28373.1| DEAD box helicase [Ectocarpus siliculosus] Length = 519 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 201/359 (55%), Gaps = 11/359 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + + V+ V+ G+ PTPIQ + P+ L D+ GI+ TG+GKT +F+LP + Sbjct: 126 MTFEEASMPEYVLREVMKQGFSAPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAM 185 Query: 61 T------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 LE+G P L++ PTRELA Q+ + +K+G++ + + GG+P Sbjct: 186 IHINAQPYLEQGDG----PIVLVVAPTRELAVQIKEECDKFGRSSEIKNTCVYGGVPKRI 241 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q L RG +++I TPGR++D GK + + LV+DEADRMLDMGF P I+ I S + Sbjct: 242 QVNDLNRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI 301 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 RQTL++SAT E+Q ++ +FL + ++ V + A + ++K +L Sbjct: 302 RPDRQTLMWSATWPKEVQALARDFLHHYYQVTVGSLELAANKDIKQIIECTEDFNKYRSL 361 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 + L Q K ++F KK L SL + G+ IHG+ Q R +L +FK G Sbjct: 362 SKHLQQHGHNGKV-LVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGG 420 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 Q++VA+D+AARGLD+ D+ V NFD PN E+YIHRIGR GRAG G A + ++ Sbjct: 421 NFQVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGVAVSFFGSKN 479 >gi|239930343|ref|ZP_04687296.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 612 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 133/349 (38%), Positives = 190/349 (54%), Gaps = 5/349 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 + FADLGL VV + G P PIQ TIP L D+ G +TG+GKT SF LP L Sbjct: 28 LTFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 87 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L GR PR +IL PTRELA QVAD + YG L + ++ GG Q LE Sbjct: 88 ATLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALE 147 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RG D+L+ TPGR+ D NRG + N++I V+DEAD+M D+GF+P + + VP Q Sbjct: 148 RGVDILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 207 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +LFSATM +E++ + + +L +P EV+ T+ H + K A + + Sbjct: 208 MLFSATMENEIKTLVDRYLNDPVSHEVDAAQGAVTTMSHHILVV---KPKDKAPVTAAIA 264 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S+ IIF + + L G A+HG + Q +R + L++FK+G + ++V Sbjct: 265 SRKGRT--IIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLV 322 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 A+D+AARG+ + + V N D ++Y+HR GRT RAGR G +L Sbjct: 323 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLA 371 >gi|241958200|ref|XP_002421819.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36] gi|223645164|emb|CAX39763.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36] Length = 557 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 198/353 (56%), Gaps = 11/353 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V D G+ KPT IQ + P+ L D+ GIA TG+GKT S+ LP + Sbjct: 119 FDEAGFPDYVLQEVKDQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVH 178 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L+ G P L+L PTRELA Q+ K+GK+ + + GG P Q Sbjct: 179 INAQPQLQYGDG----PIVLVLAPTRELAVQIQTECAKFGKSSRIRNTCVYGGAPKGPQI 234 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG ++ I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 235 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 294 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL++SAT E+Q+++ ++L +P ++ + + A V ++SK+ L++ Sbjct: 295 DRQTLMWSATWPKEVQQLARDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVK 354 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + +N I +F + K+ + L G+ AIHG+ DQ R +L F++G Sbjct: 355 HLESALNERENKILVFASTKRTCDEITTYLRSDGWPALAIHGDKDQSERDWVLDEFRKGK 414 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 +MVA+D+AARG+D+ + HV N+D+P E+Y+HRIGRTGR G G A + Sbjct: 415 TSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISF 467 >gi|290989782|ref|XP_002677516.1| DEAD/DEAH box helicase [Naegleria gruberi] gi|284091124|gb|EFC44772.1| DEAD/DEAH box helicase [Naegleria gruberi] Length = 535 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 143/357 (40%), Positives = 206/357 (57%), Gaps = 15/357 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIP-LVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F + L ++ V +GY KPTPIQ ++P +V + D+ AQTG+GKTA+F+LP++ Sbjct: 107 FEEADLHELLMTNVKKSGYTKPTPIQKHSMPAIVTSKRDMMACAQTGSGKTAAFLLPIIN 166 Query: 62 ILEKG---RARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPF 112 L K + + R P+ +IL PTREL Q+ D K+ L ++ GG Sbjct: 167 ALLKSGIHKDKRRFAPNKGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGASS 226 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT- 171 Q K+LERG D+L+ TPGR+ D R KL M+ ++ LV+DEADRMLDMGF P I++I Sbjct: 227 GYQMKQLERGVDILVGTPGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEPQIRSIVE 286 Query: 172 -SLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228 S +P R TLL+SAT E QK++ +FL + ++V T + I F + Sbjct: 287 GSGMPPKGDRLTLLYSATFPKETQKLALDFLHDELFVQVGIIGGTTDNITQSFYQV-DRR 345 Query: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288 K+ L++ L + ++ + ++F QK + L GF IHG+ DQRSR + L Sbjct: 346 GKQDKLVEVLTEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRERSL 405 Query: 289 SNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 FK+G ++VA+D+AARGLDI V HV N+D+P ++YIHRIGRTGR G G A Sbjct: 406 RQFKDGYTNILVATDVAARGLDIEKVAHVINYDLPKEIDSYIHRIGRTGRVGNLGIA 462 >gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii] Length = 771 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 148/384 (38%), Positives = 223/384 (58%), Gaps = 22/384 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+L L V ++ + Y KPTP+Q +P++ ++ D+ AQTG+GKTASF++P+L+ Sbjct: 291 FAELELGEIVDSNIVLSKYTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQ 350 Query: 62 ---------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 I E+ R + P L+L PTRELA+Q+ + K+ ++ ++ GG Sbjct: 351 MFLDGQPEFIREQNNRNNRKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGA 410 Query: 111 PFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 AQ + L ERG +L+ TPGR++D RGK+ +++I +V+DEADRMLDMGF P I+ Sbjct: 411 DIGAQMRDLPERGCHLLVATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRR 470 Query: 170 ITS--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225 I +P T R+TL+FSAT E+Q ++ +FL N + V ST+E I V + Sbjct: 471 IVEKDTMPPTGDRRTLMFSATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVV--W 528 Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 + K + L LL + ++F KK L + L +G+ IHG+ Q+ R Sbjct: 529 VEEPDKRSFLLDLLNASGPDSLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKERE 588 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 + L NF+ G ++VA+ +AARGLDIP+V HV NFD+P+ E Y+HRIGRTGR G G A Sbjct: 589 EALRNFRSGKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 648 Query: 346 FTLVAKEDIKHI--DAIEKLIEKK 367 + ++ K+I D ++ LIE K Sbjct: 649 TSFFNDKN-KNIVRDMVDLLIEAK 671 >gi|301762406|ref|XP_002916625.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Ailuropoda melanoleuca] Length = 706 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 219/373 (58%), Gaps = 7/373 (1%) Query: 10 PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--- 66 P+V+ + AG+ KPTPIQ ++ P+VLQ D+ G+AQTGTGKT S+++P L+ Sbjct: 251 PEVMENIKKAGFQKPTPIQSQSWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPVI 310 Query: 67 RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R + P L+L PTRELA QV KY L + GG Q + L++G D++ Sbjct: 311 RGQRNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCIYGGGDRNGQIQDLKKGVDII 369 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 I TPGR+ D + + ++ LV+DEAD+MLDMGF P I I V RQT++ SAT Sbjct: 370 IATPGRLNDLQMNNFVNLRSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 429 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245 ++++++++L+ P + V T A T++ + T + +KC+ +Q L+S Sbjct: 430 WPYAVRRLAQSYLKEPMIVYVGTLDLMAVSTVKQNIIVTTEE--EKCSHIQTFLESMSPK 487 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 I+F ++K +L L + SV ++HGN +Q R + L NFK G +++++A+DLA Sbjct: 488 DKVIVFVSRKATADHLSSDLILRHVSVESLHGNREQSDRERALENFKTGKVRILIATDLA 547 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 +RGLD+ D+ HV+N+D P E Y+HR+GRTGRAGR G + TL+ + D + + ++E Sbjct: 548 SRGLDVLDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLLTRNDWRVAGELINILE 607 Query: 366 KKVDWLNGDLSSL 378 + + DL ++ Sbjct: 608 RAQQSIPEDLVAM 620 >gi|219119587|ref|XP_002180550.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408023|gb|EEC47958.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 552 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 218/369 (59%), Gaps = 19/369 (5%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM-LTILEKG------RARVRM 72 GY +PTP+Q ++P+ Q D+ AQTG+GKTA F+ P+ ++++++G AR R+ Sbjct: 141 GYSRPTPVQKYSVPICTQGRDLMACAQTGSGKTAGFLFPIIMSMIKRGGSDPPENARRRI 200 Query: 73 -PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPG 131 P L+L PTRELA Q+ + +++ + ++ GG Q +++ERG D+L+ TPG Sbjct: 201 YPEALVLAPTRELAQQIHEEAKRFTYATGIASVVIYGGANVGDQLREMERGCDLLVATPG 260 Query: 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT--SLVP--FTRQTLLFSATM 187 R++D RG+L M ++ LV+DEADRMLDMGF P I+ I S +P RQT++FSAT Sbjct: 261 RLVDLIERGRLGMESVSFLVLDEADRMLDMGFEPQIRRIVEESGMPGGIDRQTMMFSATF 320 Query: 188 TDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKN 247 +Q+++ +F+++ + V S ++ + V + K AL++ LL QD + Sbjct: 321 PANIQRLASDFMRDYVFLTVGRVGSASKDVTQT-VEFVEERDKVDALMKFLLTIQDGLI- 378 Query: 248 GIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307 +IF K++ + L QGF C+IHG+ QR R L FK G ++ A+ +AAR Sbjct: 379 -LIFVETKRSCDYVEDVLCGQGFPACSIHGDKSQREREDALRYFKNGNTPILCATSVAAR 437 Query: 308 GLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKK 367 GLDIP+V V N+D+P+ ++Y+HRIGRTGRAG G A + + + + + + L+++ Sbjct: 438 GLDIPNVTQVVNYDLPSNIDDYVHRIGRTGRAGNTGAALSFINESNSGVVRELRDLLDEN 497 Query: 368 VD----WLN 372 WLN Sbjct: 498 EQDVPPWLN 506 >gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238] gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238] Length = 416 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 208/367 (56%), Gaps = 5/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FADL LSP ++ A+ + GY +PT +Q IP L+ D+ A TGTGK+A+F+LP L Sbjct: 5 FADLDLSPNLLRALEEIGYQRPTQVQAMAIPEALEGKDILASAPTGTGKSAAFLLPALQH 64 Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ R P R LIL PTRELA QVAD + K + V + GGI ++ L R Sbjct: 65 LDDFPRRDPGPARVLILTPTRELAIQVADEARELAKYTHHKVFTITGGISYQEHADILAR 124 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR++++ + IE L++DEADRMLDMGF P + ++ + +QT Sbjct: 125 TQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTF 184 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ + + + L P +I V PS + K LL+ +L Sbjct: 185 LFSATLEGRGVDGFTADLLNEPAKI-VAEPSRRERKKITQWYHRADSLPHKIELLKSILT 243 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +Q + I+F ++ + L LE S + G + Q SR +S F++G + +++ Sbjct: 244 NQ--TERAIVFVKTRERLAELRGHLETAKISCAWLQGEMPQESRNNAISRFRDGKVNVLI 301 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+PDV HV NFD+P A+ Y+HRIGRT RAG+ G A +L+ D K ++ + Sbjct: 302 ATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQKMMERV 361 Query: 361 EKLIEKK 367 + ++++ Sbjct: 362 GRYVKEE 368 >gi|167855638|ref|ZP_02478397.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755] gi|167853265|gb|EDS24520.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755] Length = 406 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 214/367 (58%), Gaps = 9/367 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D + V+ A+ G+ TPIQ KT+P L R D+ G AQTGTGKT +F++ Sbjct: 10 FIDFPIHDSVLAALDSKGFEFCTPIQAKTLPYTLIRQDIAGQAQTGTGKTLAFLVATFHH 69 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 L + PR LIL PTRELA Q+A + + +L +AL GG ++ Q K++E Sbjct: 70 LLNHDIPTKHNQPRALILAPTRELAVQIASDASILTQYADLRLALAYGGDGYDKQLKEIE 129 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP--FTR 178 RG D+LI T GR++D+ +G + ++ I+++V+DEADRM D+GFI I+ + P R Sbjct: 130 RGVDILIGTTGRVIDYVKQGIIDLDKIQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEER 189 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237 T+LFSAT++ +++++ + N + +E+ T I E F Y K ALL Sbjct: 190 FTMLFSATLSHRVRELAFEDMHNAEYVEIEPLQRTGHRIKEELF---YPSNEDKMALLLT 246 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ ++ I+F N K + L G V + G+I Q+ R+ +L +F +G + Sbjct: 247 LME-EEWPDRCIVFANTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELD 305 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGL IPDV HVFN+D+P+ E+Y+HRIGRTGRAG G + + + ++ Sbjct: 306 ILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACERYAVNL 365 Query: 358 DAIEKLI 364 AIE+ I Sbjct: 366 PAIEEYI 372 >gi|289665687|ref|ZP_06487268.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 458 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 145/381 (38%), Positives = 215/381 (56%), Gaps = 9/381 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ L LSP + + GY TPIQ +++P +LQ DV A TG+GKTA+F L +L Sbjct: 3 EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ R + L+L PTRELA QV K N+ + +L GG+P Q LE Sbjct: 63 QLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119 Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 V++ TPGRI + + L + + LV+DEADRMLDMGF I+ I S RQ Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT D ++ ++ L++P I V + E I+ F Y +K A+ LL Sbjct: 180 SLLFSATFPDIIRTLAREILKDPVEITVEGADNAPE-IDQQFFEVDPTYRQK-AVAGLLL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN +K V + SL++ GFS A+HG+++QR R ++L F + ++ Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLD+ D+ V N+++P E Y HRIGRT RAG+HG A +LVA + + A Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARVQA 355 Query: 360 IEKLIEKKVDWLNGDLSSLNP 380 +E + + W L++ P Sbjct: 356 LEAAQGQPLKWSRAPLATARP 376 >gi|67598709|ref|XP_666233.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54657185|gb|EAL36001.1| hypothetical protein Chro.30274 [Cryptosporidium hominis] Length = 868 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 203/355 (57%), Gaps = 3/355 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F G SPK++ ++ GY PTPIQ K P +L DV +A+TG+GKTA FVLPM+ Sbjct: 6 FQSFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIER 65 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +++ R ++L PTRELA Q K NL V L GG + Q + L Sbjct: 66 LGCSHSQIVGIRGVVLSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSGN 125 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+++ TPGR+ H L + ++I+++DEADR+ +MG I+ I +P RQ +L Sbjct: 126 PDIVVATPGRLFHHIIEAGLSLIAVKIIILDEADRLFEMGLASQIEKILESIPKNRQCVL 185 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 SATM L S+ L P+ I++++ +ET++ F+ + + +K A L LL++ Sbjct: 186 VSATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFL--FVREDEKLASLLYLLRNT 243 Query: 243 -DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + IIFC K +V + LE V I+GN+DQ +R LS F++ + +V Sbjct: 244 IPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLSTFRKNKSRALVV 303 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +D+AARG+DIP + +V NFD P + ++HR GRT RAG+HG+AF+L+ D+ + Sbjct: 304 TDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPY 358 >gi|195579916|ref|XP_002079802.1| GD24145 [Drosophila simulans] gi|194191811|gb|EDX05387.1| GD24145 [Drosophila simulans] Length = 641 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%) Query: 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 PK + ++D GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ ++ Sbjct: 221 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 280 Query: 69 RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q +L G Sbjct: 281 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 340 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P T Sbjct: 341 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 400 Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217 RQT++F+ATM +++++ +L+ P + + + E Sbjct: 401 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 460 Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 E V + K+ L++ L + D IIF NQKK L LEK G++ C +HG Sbjct: 461 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 517 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y HRIGRTG Sbjct: 518 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 577 Query: 338 RAGRHGKAFTLVAKED 353 RAG+ G A + V K+D Sbjct: 578 RAGKTGCAISFVTKDD 593 >gi|16768302|gb|AAL28370.1| GM01081p [Drosophila melanogaster] Length = 641 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 208/376 (55%), Gaps = 35/376 (9%) Query: 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 PK + ++D GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ ++ Sbjct: 221 PKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 280 Query: 69 RVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q +L G Sbjct: 281 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 340 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----- 177 +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P T Sbjct: 341 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 400 Query: 178 --------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217 RQT++F+ATM +++++ +L+ P + + + E Sbjct: 401 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 460 Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 E V + K+ L++ L + D IIF NQKK L LEK G++ C +HG Sbjct: 461 EQ-IVYMMGENDKRKKLMEILSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 517 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y HRIGRTG Sbjct: 518 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 577 Query: 338 RAGRHGKAFTLVAKED 353 RAG+ G A + V K+D Sbjct: 578 RAGKTGCAISFVTKDD 593 >gi|194434617|ref|ZP_03066873.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012] gi|194417136|gb|EDX33249.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012] gi|332084943|gb|EGI90125.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 155-74] Length = 421 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PT ELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|319792321|ref|YP_004153961.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS] gi|315594784|gb|ADU35850.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS] Length = 667 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 149/448 (33%), Positives = 241/448 (53%), Gaps = 57/448 (12%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRH----------DVCGIAQTGTGKT 52 F LGL+P+++ AV D G+ +PT +Q K IPL + D+ +QTG+GKT Sbjct: 79 FIRLGLAPELIAAVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKT 138 Query: 53 ASFVLPMLTILEKGRA---------------------------------------RVRMP 73 A+F+LP+L L K +A + P Sbjct: 139 AAFLLPVLHTLLKRQAEAEAEAKAEFQRLAAEAAARGEAAPKKPKRKDPTNTRHFKAATP 198 Query: 74 RTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGR 132 LIL PTRELA QVA D E L +A ++GG+P++ Q KL+ AD+++ TPGR Sbjct: 199 GALILCPTRELAQQVAHDAIELVRHCRGLRIANVVGGMPYQLQIAKLQ-NADLVVATPGR 257 Query: 133 ILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQ 192 +LD +L ++ ++ LV+DEADRMLD+GF + + L +QT++FSAT +Q Sbjct: 258 LLDLQRSQQLKLDQVKFLVVDEADRMLDLGFSDDLAEVNQLTIERQQTMMFSATFAPRIQ 317 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHC-FVATYAQYSKKCALLQQLLQSQDTMKNGIIF 251 ++++ ++ P+R+ +++P I+ + A +Q+ +K LL L+ ++ I+F Sbjct: 318 QLAQRVMREPQRVTIDSPQEKHANIKQSLYWADNSQHKRK--LLDHWLRD-TSINQAIVF 374 Query: 252 CNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 + + L + L+++GFS A+HG + Q R + L ++G +Q++VA+D+AARG+D+ Sbjct: 375 ASTQVECDGLANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDV 434 Query: 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK--KVD 369 P + HVFNF +P +AE+Y HRIGRTGRAGR G A T D + I IE+ + K + Sbjct: 435 PTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEQYSRQQFKAE 494 Query: 370 WLNGDLSSLNPPLEKIDIAQHNHARKNN 397 + G P + + ++ R +N Sbjct: 495 VVAGLEPQQRMPQSRPPMGEYRGGRGDN 522 >gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue; AFUA_1G14990) [Aspergillus nidulans FGSC A4] Length = 814 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 140/359 (38%), Positives = 203/359 (56%), Gaps = 3/359 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++ + + PTPIQ KTIP+ L D+ G A TG+GKTA+FV+P+L Sbjct: 300 FQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 359 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +V R IL PTRELA Q + K ++T L+GG Q L++ Sbjct: 360 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKR 419 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV+I TPGR +DH N ++ +EILV+DEADRML+ GF + I + +P +RQT+ Sbjct: 420 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 479 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240 LFSATMTD + K+ L P R+ V+T +TA T+ FV + K+ L L + Sbjct: 480 LFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCK 539 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 T + I+F QKK + G +HG++ Q R+K + +F++G + ++ Sbjct: 540 EVYTGRV-IVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLL 598 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 A+DLA+RGLDI V V N++ P E Y+HR+GRT RAGR G+A T+ A+ D K + A Sbjct: 599 ATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKA 657 >gi|239980958|ref|ZP_04703482.1| ATP-dependent RNA helicase [Streptomyces albus J1074] gi|291452821|ref|ZP_06592211.1| ATP-dependent RNA helicase [Streptomyces albus J1074] gi|291355770|gb|EFE82672.1| ATP-dependent RNA helicase [Streptomyces albus J1074] Length = 789 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 190/346 (54%), Gaps = 5/346 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA LGL VV + G KP PIQ TIP L D+ G +TG+GKT SF LP+L Sbjct: 74 FASLGLPEGVVRKLAQNGVTKPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAS 133 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L G + PR +IL PTRELA QVAD + YG L + ++ GG Q LERG Sbjct: 134 LAGGHTEKKKPRGVILTPTRELAMQVADALQPYGDVLGLRMKVVCGGTSMGNQIYALERG 193 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+L+ TPGR+ D NRG + NIEI ++DEAD+M D+GF+P + + VP Q +L Sbjct: 194 VDILVATPGRLRDIINRGACSLENIEIAILDEADQMSDLGFMPEVTELLDQVPEGGQRML 253 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATM +E+ + + +L+NP EV+ T+ H + + K + + + Sbjct: 254 FSATMENEISSLVKRYLKNPVSHEVDAAQGAVTTMSHHIL--IVKPRDKAPVTGAIAARK 311 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 IIF + + L + G A+HG + Q +R + L++FK+G + ++VA+ Sbjct: 312 GRT---IIFVRTQLGADRVAEQLRESGVKADALHGGMTQGARTRTLADFKDGHVNVLVAT 368 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 D+AARG+ + + V N D ++Y+HR GRT RAGR G +L Sbjct: 369 DVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSL 414 >gi|224048550|ref|XP_002190979.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Taeniopygia guttata] Length = 729 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 138/361 (38%), Positives = 209/361 (57%), Gaps = 7/361 (1%) Query: 10 PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP---MLTILEKG 66 P ++ ++ G+ KPTPIQ + P++LQ D+ GIAQTGTGKT ++++P LT Sbjct: 334 PDIMASIRKVGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLTSQPIS 393 Query: 67 RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 + + P L+L PTRELA QV KY + + GG + Q + +G D++ Sbjct: 394 KDQRGGPGMLVLAPTRELALQVEAECSKYAYK-GIKSICVYGGGDRKGQIDMVTKGVDIV 452 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 I TPGR+ D + + +I LV+DEADRMLDMGF P I I V RQT++ SAT Sbjct: 453 IATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMTSAT 512 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245 D ++++++++L+NP + V T A T++ + + KK A + ++S Sbjct: 513 WPDGVRRLAKSYLKNPMIVYVGTLDLAAVSTVQQKVIVIPEE--KKRAFMHSFIKSMKPK 570 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 IIF +K +L QG V ++HGN +Q R + L +FK+G ++++VA+DLA Sbjct: 571 DKVIIFVGKKLTADDLASDFGIQGIPVQSLHGNREQCDREQALDDFKKGKVRILVATDLA 630 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365 +RGLD+ D+ HVFNFD P E Y+HR+GRTGRAGR G+A TLV D + + ++E Sbjct: 631 SRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRSGEAVTLVTSNDWRFASELIDILE 690 Query: 366 K 366 + Sbjct: 691 R 691 >gi|332084705|gb|EGI89893.1| ATP-dependent RNA helicase rhlB [Shigella boydii 5216-82] Length = 421 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PT ELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYTKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|303271399|ref|XP_003055061.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463035|gb|EEH60313.1| predicted protein [Micromonas pusilla CCMP1545] Length = 733 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 213/387 (55%), Gaps = 33/387 (8%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILE-- 64 L K++ A+ GY KP+PIQ+ +IP+ L + DV GIA+TG+GKT +FV+PML I+E Sbjct: 304 LPEKILRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAYIMELP 363 Query: 65 --KGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 P L++ PTRELA Q+ + K+ N V ++GG E Q KL RG Sbjct: 364 VMTDEVAAHGPYALVMAPTRELAQQIEEETTKFAHFLNYRVTSVVGGQSIEDQGFKLRRG 423 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT------SLVPF 176 +++I TPGR++D R ++ +V+DEADRM+DMGF P + ++ +L P Sbjct: 424 CEIVIGTPGRVIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVMSVMDSMSADNLKPI 483 Query: 177 T-------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI 217 R T +FSATM +++++ +L+NP + + + T++ I Sbjct: 484 DEAETIDAGGLEAGAAGTRYRMTYMFSATMPPSVERLARKYLRNPAVVNIGSAGKTSDLI 543 Query: 218 EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHG 277 + V + +K+ L L + DT I+F N K+ V ++ KQG+SV +IHG Sbjct: 544 KQV-VMWMTRGAKETQLELVLSRYPDT--QAIVFVNTKRAVDHVQSLCVKQGYSVASIHG 600 Query: 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 Q R L FK G ++VA+D+A RG+D+ D+ V N+++P ENY HRIGRTG Sbjct: 601 GKSQDQREDSLKGFKAGEYDILVATDVAGRGIDVKDIDLVVNYEMPLVIENYTHRIGRTG 660 Query: 338 RAGRHGKAFTLVAKEDIKHIDAIEKLI 364 RAGR G A + + ED + +++L+ Sbjct: 661 RAGRQGTAVSFITSEDTDVMYDLKELL 687 >gi|313233924|emb|CBY10092.1| unnamed protein product [Oikopleura dioica] Length = 611 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 218/392 (55%), Gaps = 26/392 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+ L + A+ A Y PTP+Q IP++ + D+ AQTG+GKTA+F+LPML+ Sbjct: 142 FAECELGDIINEAIKLANYTVPTPVQKNAIPIINKGRDLMSCAQTGSGKTAAFLLPMLSS 201 Query: 63 L---------------EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLI 107 + +GR ++ P L+L PTRELA+Q+ + K+ + ++ Sbjct: 202 IFHSGPGESANQNSSGYRGRRKI-YPLALVLSPTRELASQIYEESRKFAYRSQVRPCVIY 260 Query: 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYI 167 GG AQ + L+RG +L+ TPGR+ D +RGK+ ++ L +DEADRMLDMGF P I Sbjct: 261 GGADVGAQMRDLDRGCHLLVATPGRLADFLDRGKIGLDYCRYLCLDEADRMLDMGFEPQI 320 Query: 168 QNIT---SLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA 223 + I ++ P RQTL+FSAT E+Q ++ +FL N + V ST++ I V Sbjct: 321 RRIVEKDAMPPKGDRQTLMFSATFPKEIQHLARDFLDNYIFLTVGRVGSTSQNITQKVV- 379 Query: 224 TYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRS 283 + + K L LL + D ++F KK L + L +GF IHG+ +QR Sbjct: 380 -WVDENDKINFLTDLLTATDQNTCFVVFTETKKGADYLDNYLYDRGFRSTCIHGDRNQRE 438 Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343 R L +F+E ++VA+ +AARGLDIP+V HV NFD+P+ + Y+HRIGRTGR G G Sbjct: 439 REGALKSFREAVTPVLVATAVAARGLDIPNVRHVINFDLPSDIDEYVHRIGRTGRVGNIG 498 Query: 344 KAFTLVAKEDIKHI-DAIEKLIEKKV---DWL 371 A + ++ + D +E LIE K +WL Sbjct: 499 LATSFFNDKNSNIVRDLLELLIEAKQEVPEWL 530 >gi|14548160|gb|AAA93186.2| DEAD family RNA helicase [uncultured crenarchaeote 4B7] Length = 451 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 215/370 (58%), Gaps = 8/370 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F +L ++ ++ ++ + G+ P PIQ ++IP +L+ +DV G A TGTGKTA+F +PML Sbjct: 4 FDELKINEDIMRSIKELGFTTPFPIQTQSIPELLRGNDVIGQAHTGTGKTAAFGIPMLQN 63 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 + G + L++ PTRELA Q+ + +K GK + V + GG Q L R Sbjct: 64 IIHGGG----IQGLVIAPTRELAMQITEEIKKVGKYTKIKVVTVYGGQGIGIQLDALRRK 119 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 ++++ TPGR++DH + G + +NI+ +V+DEAD MLDMGFI I+ + +P R T L Sbjct: 120 PEIVVATPGRLIDHLDNGSIRTDNIKHVVLDEADVMLDMGFIEDIEYVLQKIPGNRITSL 179 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 +SATM E+ ++S+ +L N K I +++ + E I+ F+ + K L + Q++ Sbjct: 180 WSATMPPEILRLSDKYLNNAKNILIDSDDLSGEGIDQAFLVIKDREKHKY-LTDFINQNK 238 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + I+FC+ K N+ L K + V I G++ Q R + F++ ++VA+ Sbjct: 239 GQV---IVFCSTKIRTRNVARDLIKSRYKVVPIEGDMSQNKREYSMMKFRKNQADILVAT 295 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+D+P VG V N+DVPN+ Y HRIGRT RAG GKA TLV+ I I+K Sbjct: 296 DVAARGIDVPRVGLVVNYDVPNQDMVYFHRIGRTARAGAKGKAITLVSYSSIGDWKFIKK 355 Query: 363 LIEKKVDWLN 372 I+ + LN Sbjct: 356 QIKSDLTDLN 365 >gi|320185441|gb|EFW60210.1| ATP-dependent RNA helicase RhlB [Shigella flexneri CDC 796-83] Length = 421 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEILEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118] Length = 604 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68 A + KPTP+Q ++P+V D+ AQTG+GKT F+ P+L+ + G + Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219 Query: 69 --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R P +I+ PTRELA Q+ D +K+ + ++ GG P Q +++ERG D+L Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182 + TPGR+ D RGK+ + N++ LV+DEADRMLDMGF P I++I T RQTL+ Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++Q ++ +FL + + V ST+E I + Q KK ALL L S Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 398 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + +IF K+ L L Q F AIHG+ Q R + L+ F+ G L+VA+ Sbjct: 399 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 +AARGLDIP+V HV N+D+P+ ++Y+HRIGRTGRAG G A E+ + + + Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516 Query: 363 LI 364 ++ Sbjct: 517 IL 518 >gi|226487070|emb|CAX75400.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum] gi|226487074|emb|CAX75402.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum] gi|226487078|emb|CAX75404.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum] Length = 768 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 150/430 (34%), Positives = 238/430 (55%), Gaps = 25/430 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-M 59 + F +L + ++ + G+ PTPIQ + P+ L DV GIAQTG+GKTA+F+LP + Sbjct: 89 LSFNELSVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTATFLLPAV 148 Query: 60 LTILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 + I+ + R R P L+L PTRELA QV +++ +L GG Q ++ Sbjct: 149 IHIMAQPRLLRNEGPICLVLVPTRELAQQVLSVAKEFADAASLRAICFYGGSAKGTQLRE 208 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 +++G ++ I TPGR++D + L++ + LV+DEADRMLDMGF P I+ I S V R Sbjct: 209 MQKGGEICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKILSHVRPDR 268 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 QTL++SAT E+Q ++ FL + ++ + + S A V + K+ L++ L Sbjct: 269 QTLMWSATWPKEVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWRKEQRLIE-L 327 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L S + ++F K+ L +SL ++GF V A+HG QR R L++FK G + + Sbjct: 328 LSSFGRSRT-LVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRMNI 386 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI- 357 ++A+D+A+RGLDI ++ +V NFD PN+ E+YIHRIGRT R+ + G AFT ++ + Sbjct: 387 LIATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKRGTAFTFFTYKNARQAR 446 Query: 358 DAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPI-----------PQKSTGF 406 D IE L E + + P L ++ ++ RK+ P+ P + TGF Sbjct: 447 DLIEILDEANQE--------ITPELIQL-AGMSSYLRKSGPLKKNPPAFQQKPPGRITGF 497 Query: 407 DRRKKNYSSQ 416 ++ SQ Sbjct: 498 GNSSSSFPSQ 507 >gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] Length = 443 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 145/413 (35%), Positives = 221/413 (53%), Gaps = 13/413 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL +++ + + KPT IQ + IP+ + D+ ++TG+GKT +FVLPML Sbjct: 1 MQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 K ++ + PR +IL PTRELA QV + AL++GG F Q K L Sbjct: 61 HKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 R ++ TPGR+ DH L + +E L++DEADRMLD+GF P ++ I R Sbjct: 121 RRYPKFIVATPGRLADHLEHRSLYLEGLETLILDEADRMLDLGFAPELRRIHKAAKHRRR 180 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 QTL+FSAT+ ++ ++ L +PKRI + + + I F K A+L + Sbjct: 181 QTLMFSATLDHADVNDIAAEMLNSPKRIAIGVSNEEHKDITQKFYLC-DHLDHKEAILDR 239 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L S+ + IIF + + L L ++ A+ GN++Q R I+S F+ + Sbjct: 240 VL-SEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFK 298 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++V +D+A+RGLDI V HV NFD+P E Y+HR+GRTGRAG G A +LV +D Sbjct: 299 ILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSF 358 Query: 358 DAIEKLIEKKVDW-----LNGDLSSLNPPLEKIDIA-QHNHARKNNPIPQKST 404 +E +++ +++ L G L PP K D + A+K+ P +KS Sbjct: 359 KRVEAYLQQDLEFSVFEDLKGKFKGLKPP--KPDFRNKKATAKKSRPQAKKSA 409 >gi|238879720|gb|EEQ43358.1| hypothetical protein CAWG_01593 [Candida albicans WO-1] Length = 562 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 200/360 (55%), Gaps = 11/360 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V D G+ KPTPIQ + P+ L D+ GIA TG+GKT S+ LP + Sbjct: 130 FDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVH 189 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 L+ G P L+L PTREL Q+ K+GK+ + + GG P Q Sbjct: 190 INAQPQLQYGDG----PIVLVLAPTRELTVQIQTECSKFGKSSRIRNTCVYGGAPKGPQI 245 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG ++ I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 246 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 305 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL++SAT E+Q+++ ++L +P ++ + + A V ++SK+ L++ Sbjct: 306 DRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVK 365 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + N I +F + K+ + L G+ AIHG+ +Q R +L F++G Sbjct: 366 HLESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGK 425 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+AARG+D+ + HV N+D+P E+Y+HRIGRTGR G G A + + + K Sbjct: 426 TSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSK 485 >gi|147904603|ref|NP_001080569.1| ATP-dependent RNA helicase DDX42 [Xenopus laevis] gi|82209788|sp|Q7ZY47|DDX42_XENLA RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD box protein 42 gi|27696431|gb|AAH43977.1| Ddx42-prov protein [Xenopus laevis] Length = 947 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 130/353 (36%), Positives = 207/353 (58%), Gaps = 3/353 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G +++ + + Y +PTPIQ + IP+ L D+ GIA+TG+GKTA+F+ P+L Sbjct: 252 FAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVH 311 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + +K P +I+ PTREL Q+ +++GK YNL + GG Q K L+ Sbjct: 312 IMDQKELQPADGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 371 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA++++CTPGR++DH + + + LV DEADRM DMGF +++I + V RQT Sbjct: 372 EGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQT 431 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +++K++ + L +P R+ E I + K L ++L++ Sbjct: 432 LLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVE 491 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 T + ++F +K N L +L + + +HG++DQ R K++S+FK+ +I ++V Sbjct: 492 FTST-GSVLVFVTKKANAEELAANLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLV 550 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A+TL+ ++ Sbjct: 551 ATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKE 603 >gi|226357411|ref|YP_002787150.1| ATP-independent RNA helicase [Deinococcus deserti VCD115] gi|226319401|gb|ACO47396.1| putative ATP-independent RNA helicase [Deinococcus deserti VCD115] Length = 469 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 205/356 (57%), Gaps = 8/356 (2%) Query: 20 GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 GY + T IQ +++P VL+ D+ A+TG+GKT +F + +L L+ R +V+ L+L Sbjct: 23 GYREMTTIQQRSLPHVLKGRDLLAQAETGSGKTVAFGIGILHRLDPARLKVQ---GLVLC 79 Query: 80 PTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN 138 PTRELA QVA+ + + N+ V L GG+P Q LE G +++ TPGRI DH Sbjct: 80 PTRELADQVANELRRLARGEGNIKVLTLTGGVPLRHQVTSLEHGVHIVVGTPGRIRDHLA 139 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 RG + + ++ LV+DEADRM DMGF + +I P TRQTLLFSAT D +++ + F Sbjct: 140 RGSINLEDVHTLVLDEADRMTDMGFYDEMASIVCACPRTRQTLLFSATYPDNIKQTTAEF 199 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 L +P + V+ TA I+ F + ++ A + +LL + ++FCN + + Sbjct: 200 LNDPVEVVVDA-QHTATQIKQLFYEI--GFDERDAAIGRLLNHFKPLST-LVFCNTRVHC 255 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 L L+ QGFS +HG+++QR R +IL F + ++VA+D+AARGLDI + V Sbjct: 256 RELAEELQAQGFSALGLHGDLEQRERDEILVLFSNRSCSVLVATDVAARGLDISRLDAVM 315 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374 N DV E ++HR+GRTGRAG G A TL + + K + IE + V W N D Sbjct: 316 NADVSRDTEVHVHRVGRTGRAGEAGLALTLCSPNEKKWVSLIEDYQKTTVQWANLD 371 >gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503] gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503] Length = 426 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 219/378 (57%), Gaps = 19/378 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L V+ + D + + TP+Q TIP++L+ D+ AQTGTGKTA++VLP++ Sbjct: 1 MRFDELDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 L KG +I+ PTRELA Q+ + G Y + VA+ G GI +E Sbjct: 61 NELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQ--GFTYFIPSVSAVAVYGGTDGIAWEQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LE GAD++I TPGR+L H G + ++ + V+DEADRMLDMGF I + + Sbjct: 119 QKRGLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231 P QT++FSATM +++ +++ L++P+ +++ P S +T C+ +K Sbjct: 179 PPYCQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICY------DPQK 232 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 +LQ L +Q + IIF + K V L +L++ F+V A+H +++Q R +++ F Sbjct: 233 LKILQDLF-TQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEF 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVA 350 K G I ++VA+D+ ARG+DI D+ V NFD+P+ E+Y+HRIGRT R G A T V+ Sbjct: 292 KSGHIDILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVS 351 Query: 351 KEDIKHIDAIEKLIEKKV 368 ++ IE +EK+V Sbjct: 352 IDEQAQFKRIEDFLEKEV 369 >gi|21243124|ref|NP_642706.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv. citri str. 306] gi|21108643|gb|AAM37242.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 458 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 212/381 (55%), Gaps = 9/381 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ L LSP + + GY TPIQ ++P +LQ DV A TG+GKTA+F L +L Sbjct: 3 EFSALPLSPALAPGIDALGYTVLTPIQAHSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ R + L+L PTRELA QV K N+ + +L GG+P Q LE Sbjct: 63 KLDPALTRAQ---ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLE 119 Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 V++ TPGRI + + L + + LV+DEADRMLDMGF I+ I S RQ Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT D ++ ++ L+ P I V S E I+ F Y +K A+ LL Sbjct: 180 SLLFSATFPDSIRTLARELLKEPVEITVEGADSAPE-IDQQFFEVDPTYRQK-AVAGLLL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN +K V + SL++ GFS A+HG+++QR R ++L F + ++ Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLD+ D+ V N+++P E Y HRIGRT RAG+HG A +LVA + A Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQA 355 Query: 360 IEKLIEKKVDWLNGDLSSLNP 380 +E + + W L++ P Sbjct: 356 LETEQGQPLKWSRAPLATARP 376 >gi|160380700|sp|A6SFW7|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2 Length = 514 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ PTPIQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 104 FDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 163 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 164 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQI 219 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L +G +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 220 RDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRP 279 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E++ ++ ++L ++ + + +A V +++ K+ + + Sbjct: 280 DRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTK 339 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + N I IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 340 HLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 399 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ ++ HVFN+D PN +E+YIHRIGRTGRAG+ G A TL ++ K Sbjct: 400 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQK 459 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 460 QARDLVNVLTEAK 472 >gi|261823430|ref|YP_003261536.1| ATP-dependent RNA helicase RhlB [Pectobacterium wasabiae WPP163] gi|261607443|gb|ACX89929.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae WPP163] Length = 430 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 210/369 (56%), Gaps = 11/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 63 L----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L + PR LI+ PTRELA Q+ + E L + L GG ++ Q K Sbjct: 71 LLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+L+ T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAA 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL F +G Sbjct: 248 QTLLE-EEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGN 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG+ G + +L +E Sbjct: 307 LDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYAL 366 Query: 356 HIDAIEKLI 364 ++ AIE I Sbjct: 367 NLPAIETYI 375 >gi|47459115|ref|YP_015977.1| DEAD-box ATP-dependent RNA helicase [Mycoplasma mobile 163K] gi|47458444|gb|AAT27766.1| DEAD-box ATP-dependent RNA helicase [Mycoplasma mobile 163K] Length = 557 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 221/371 (59%), Gaps = 6/371 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L + K++ + G+ PT IQ I + ++ G AQTGTGKTA+F + ++ Sbjct: 1 MKFQELDIDDKIINNLKKIGFEAPTQIQELVISTANKNQNILGCAQTGTGKTAAFGVSII 60 Query: 61 TILEKGRARVRMPR--TLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIP-FEAQNK 117 + K + TLIL PTREL+ QV +N + + N +T + GG+ E+ Sbjct: 61 NKILKNKKNNAKSSLTTLILVPTRELSVQVNENIKLFSSNLPITSLAIYGGMRNRESHFS 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 +RG D+++ TPGR+LD+ GKL ++ ++ +V+DEAD M+DMGFI ++ I Sbjct: 121 IFKRGLDIIVATPGRLLDYIKSGKLSLSQVDTVVLDEADLMVDMGFIDDVKEILKRTKEE 180 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 +Q +LFSATM + + E+F+ + I+ + + + IEH +A + SK LLQQ Sbjct: 181 KQVMLFSATMPKAIMNLVEDFMGKFELIQTESFAKPLQNIEH--LAYFYTSSKPVELLQQ 238 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L+ ++ + + I+F K++ N+ + L K + ++HG+ Q SR +IL +FKEG IQ Sbjct: 239 MLK-EEKIYSAIVFVKTKRDADNVENLLSKMKLKIDSLHGDKTQASRSRILRSFKEGKIQ 297 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+A+RG+DI D+ HVFN ++P E Y HR+GRTGRA + GKA + +K D + Sbjct: 298 ILVATDVASRGIDIDDISHVFNLNIPEDPEIYTHRVGRTGRASKVGKAISFFSKRDFFLL 357 Query: 358 DAIEKLIEKKV 368 +EK I+ ++ Sbjct: 358 AKVEKEIKMEI 368 >gi|284029039|ref|YP_003378970.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida DSM 17836] gi|283808332|gb|ADB30171.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836] Length = 715 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 132/347 (38%), Positives = 192/347 (55%), Gaps = 5/347 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ LGL+P++V + G P PIQ TIP L DV G QTG+GKT F LP L Sbjct: 270 FSALGLAPRLVQRLARDGITAPFPIQTATIPDALAGKDVLGRGQTGSGKTLGFGLPTLMR 329 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L G R PR +IL PTRELA QV D E ++V L+ GG+P+ Q L RG Sbjct: 330 LAGGHTESRRPRGMILVPTRELAMQVHDALEPLAHVMGVSVKLIAGGLPYPKQIDALRRG 389 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+LI TPGR++D +G + +E+ V+DEAD M DMGF+P + + + P Q LL Sbjct: 390 VDLLIATPGRLIDLCEQGAADLGAVEVAVLDEADHMCDMGFMPAVTTLLDMTPKEGQRLL 449 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ +++ + + +L++P + ++ T+EH + + + L L S+ Sbjct: 450 FSATLDNDVDTIVKTYLKDPVTHSTESGQASVTTMEHHLLVIEPGHKQS---LTAELASR 506 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D IIF K + L +G A+HG + Q +R + L FK+G++ ++VA+ Sbjct: 507 DGRT--IIFVRTKLGADRVATQLRDRGVMAAALHGGLTQGARNRTLDQFKDGSVPVLVAT 564 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 D+AARG+ + DVG V D P ++Y+HR GRT RAG G TL+ Sbjct: 565 DVAARGIHVDDVGLVVQADPPAEHKDYLHRAGRTARAGGKGAVVTLL 611 >gi|313235130|emb|CBY25002.1| unnamed protein product [Oikopleura dioica] Length = 653 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 207/372 (55%), Gaps = 12/372 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF L P + V A Y PTP+Q +P++ D+ AQTG+GKTA+F++PML+ Sbjct: 198 DFVSAELGPIITENVKLAHYTVPTPVQKYAVPIIHAGRDIMSCAQTGSGKTAAFLMPMLS 257 Query: 62 -------ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 + + ++R P L+L PTREL Q+ K+ + ++ GG Sbjct: 258 NIFHNPGKIPRHQSRKAYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGE 317 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + L RG +L+ TPGR+ D RGK+ + L +DEADRMLDMGF P I+ I V Sbjct: 318 QLRDLSRGCHLLVATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKV 377 Query: 175 --PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 P RQTL+FSAT ++Q ++ +FL N + V ST+ I F Y Q ++K Sbjct: 378 IFPSDRQTLMFSATFPKQIQALASDFLDNYIFLAVGRVGSTSANITQRF--EYVQETEKV 435 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 L +LL++ M I+F KK L H L ++G+ IHG+ +Q+ R + + FK Sbjct: 436 RKLCELLENGQEMLT-IVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFK 494 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+ +AARGLDIP+V HV NFD+P+ + Y+HRIGRTGRAG G A ++ Sbjct: 495 SGQTPILVATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWATAFYNEK 554 Query: 353 DIKHIDAIEKLI 364 + K D + +L+ Sbjct: 555 NAKISDDLLQLL 566 >gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii] gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii] Length = 494 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 218/377 (57%), Gaps = 14/377 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F DL L P+++ A + + KPTPIQ + IP L+ D+ G+AQTG+GKTA+F +P+L Sbjct: 74 FNDLNLVPELIEACKNLNFDKPTPIQARAIPPALEGRDIIGLAQTGSGKTAAFAIPILNR 133 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + + +L PTRELA Q + F+ G + ++GG+ Q ++L R Sbjct: 134 LWEDKQPYY---ACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMRK 190 Query: 123 ADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT-RQT 180 ++I TPGR++DH K + + LV+DEADR+LDM F P + I ++P R T Sbjct: 191 PHIIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVIPTQDRTT 250 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSATMT ++ K+ L P + V+ T +T+ + + K L LL Sbjct: 251 YLFSATMTSKIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGL--KNTYLIYLL- 307 Query: 241 SQDTMKNGIIFCNQKKN---VVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +++ K IIF K N + LC+ LE F+ A+HG+++Q R L FK G Sbjct: 308 NENIGKTVIIFTRTKANAERLSALCNLLE---FNATALHGDLNQNQRTGALDLFKAGRRS 364 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ +LV++ D++ I Sbjct: 365 ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 424 Query: 358 DAIEKLIEKKVDWLNGD 374 IE+++ KK+ N D Sbjct: 425 LRIEEVLGKKLPKENCD 441 >gi|238759816|ref|ZP_04620973.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236] gi|238701959|gb|EEP94519.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236] Length = 428 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 139/366 (37%), Positives = 213/366 (58%), Gaps = 11/366 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P+V+ A+ + G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPQVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHY 70 Query: 63 L-----EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 L E+GR + PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAEEGR-QTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLK 129 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSV 189 Query: 178 --RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 R +LFSAT++ +++++ + N + +EV T I+ Y +K LL Sbjct: 190 DKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELF--YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL +F +G Sbjct: 248 QTLIE-EEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYAL 366 Query: 356 HIDAIE 361 ++ AIE Sbjct: 367 NLPAIE 372 >gi|261213074|ref|ZP_05927358.1| ATP-dependent RNA helicase [Vibrio sp. RC341] gi|260838139|gb|EEX64816.1| ATP-dependent RNA helicase [Vibrio sp. RC341] Length = 448 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 142/389 (36%), Positives = 211/389 (54%), Gaps = 12/389 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F DLGL +++ + + + T IQ + IPL + D+ ++TG+GKT +FVLPML Sbjct: 1 MQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 K +A + PR +IL PTRELA QV + T L+ GG F Q K L Sbjct: 61 HKSLKTKAFSAKDPRGVILVPTRELAKQVYGELRSMLAGLSYTATLITGGENFNDQVKAL 120 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR- 178 RG ++ TPGR+ DH + L + +E LV+DEADRMLD+GF ++ I + R Sbjct: 121 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 180 Query: 179 QTLLFSATMTD-ELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 QTL+FSAT+ ++ ++ L PKRI + S + I +H ++ + + K ALL Sbjct: 181 QTLMFSATLDHADVNDMAMEMLNEPKRIAIGIGSEEHKDITQHFYLCDHLDH--KEALLD 238 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 ++L + + IIF + + L L K A+ GN++Q R I+S F+ Sbjct: 239 RILADAE-YRQVIIFTATRADTDRLTEKLNKSNLKAVALSGNLNQTQRNTIMSQFERTVF 297 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 +++V +D+A+RGLDIP V HV NFD+P E Y+HRIGRTGRAG G A +LV +D Sbjct: 298 KILVTTDVASRGLDIPSVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDS 357 Query: 357 IDAIEKLIEKKVDW-----LNGDLSSLNP 380 +E +++ + + L G L P Sbjct: 358 FKRVEAFLQQDIQFEVLEGLQGKFKGLKP 386 >gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii] Length = 816 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 148/384 (38%), Positives = 223/384 (58%), Gaps = 22/384 (5%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 FA+L L V ++ + Y KPTP+Q +P++ ++ D+ AQTG+GKTASF++P+L+ Sbjct: 336 FAELELGEIVDSNIVLSKYTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQ 395 Query: 62 ---------ILEKGRA--RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 I E+ R + P L+L PTRELA+Q+ + K+ ++ ++ GG Sbjct: 396 MFLDGQPEFIREQNNRNNRKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGA 455 Query: 111 PFEAQNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 AQ + L ERG +L+ TPGR++D RGK+ +++I +V+DEADRMLDMGF P I+ Sbjct: 456 DIGAQMRDLPERGCHLLVATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRR 515 Query: 170 ITS--LVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY 225 I +P T R+TL+FSAT E+Q ++ +FL N + V ST+E I V + Sbjct: 516 IVEKDTMPPTGDRRTLMFSATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVV--W 573 Query: 226 AQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 + K + L LL + ++F KK L + L +G+ IHG+ Q+ R Sbjct: 574 VEEPDKRSFLLDLLNASGPDSLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKERE 633 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 + L NF+ G ++VA+ +AARGLDIP+V HV NFD+P+ E Y+HRIGRTGR G G A Sbjct: 634 EALRNFRSGKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 693 Query: 346 FTLVAKEDIKHI--DAIEKLIEKK 367 + ++ K+I D ++ LIE K Sbjct: 694 TSFFNDKN-KNIVRDMVDLLIEAK 716 >gi|195388290|ref|XP_002052813.1| GJ17767 [Drosophila virilis] gi|194149270|gb|EDW64968.1| GJ17767 [Drosophila virilis] Length = 835 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + G P+++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ Sbjct: 409 WNESGFPPEIIEIIDTVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 468 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 ++ R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q Sbjct: 469 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQG 528 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P Sbjct: 529 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 588 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++++ ++L+ P + + + Sbjct: 589 TNLKPDSEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 648 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E V + K+ L+Q L S IIF NQKK L LEK G++ Sbjct: 649 KPTERTNQ-IVYMMGENDKRKKLMQIL--SAGIEPPVIIFVNQKKGADVLAKGLEKLGYN 705 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 C +HG Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y H Sbjct: 706 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTH 765 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG+ G A + V K+D Sbjct: 766 RIGRTGRAGKTGVAISFVTKDD 787 >gi|195032613|ref|XP_001988529.1| GH11216 [Drosophila grimshawi] gi|193904529|gb|EDW03396.1| GH11216 [Drosophila grimshawi] Length = 864 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 208/382 (54%), Gaps = 34/382 (8%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + + G P+++ + GY +PTPIQ + IP+ LQ D+ G+A+TG+GKT +F++P+L+ Sbjct: 438 WNESGFPPEIIEIIDTVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSW 497 Query: 63 LEKGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 ++ R+ P +I+ PTRELA Q+ + K+G+ + +++GG+ E Q Sbjct: 498 IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQG 557 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L G +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P Sbjct: 558 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 617 Query: 177 T-------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 T RQT++F+ATM +++++ +L+ P + + + Sbjct: 618 TNLKPDTEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVG 677 Query: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 E V + K+ L+Q L S IIF NQKK L LEK G++ Sbjct: 678 KPTERTNQ-IVYMMGENDKRKKLMQIL--SAGIEPPVIIFVNQKKGADVLAKGLEKLGYN 734 Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIH 331 C +HG Q R L+ K G ++VA+D+A RG+DI DV V N+D+ E+Y H Sbjct: 735 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTH 794 Query: 332 RIGRTGRAGRHGKAFTLVAKED 353 RIGRTGRAG+ G A + V K+D Sbjct: 795 RIGRTGRAGKTGVAISFVTKDD 816 >gi|294673582|ref|YP_003574198.1| DEAD/DEAH box helicase [Prevotella ruminicola 23] gi|294472821|gb|ADE82210.1| ATP-dependent helicase, DEAD/DEAH box family [Prevotella ruminicola 23] Length = 446 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 219/377 (58%), Gaps = 12/377 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F + L+ ++ A+ D + TPIQ + IP +L +DV G+AQTGTGKTA+++LP+L Sbjct: 1 MKFEETYLNDNILDALYDMHFEDMTPIQEQCIPEILDGYDVLGVAQTGTGKTAAYLLPIL 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 + L+ G +I+ PTRELA Q+ + +G Y L +VA+ G G ++ Sbjct: 61 SELDDGDYPKDAINAVIMSPTRELAQQIDQAMQGFG--YYLDDVSSVAVYGGNDGNRYDQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 + + + GADVLI TPGR+L H G L ++ V+DEADRMLDMGFI I I + Sbjct: 119 ELRSMRMGADVLIATPGRLLSHLKVGNLDLSRCSFFVLDEADRMLDMGFIEDIMKIVKEL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 P + Q ++FSATM ++++++ L NP I++ S AE I Y +K + Sbjct: 179 PASCQRIMFSATMPKKIRELAVQLLHNPVEIQIAV-SKPAEKIHQMAYVCYE--PQKLKI 235 Query: 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 +Q + + D ++ IIF +K+ V + L+ + +H ++ Q R + + FK G Sbjct: 236 IQDIFKKGD-LQRVIIFSGKKERVKEVTRKLKSMHINCDQMHSDLSQAERDEAMYRFKAG 294 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++VA+D+ ARG+DI D+ V N+DVP+ +E+Y+HRIGRT RA R G+A T V+ +D+ Sbjct: 295 QTDVLVATDIVARGIDIDDIRLVINYDVPSDSEDYVHRIGRTARADRDGEAITFVSDDDM 354 Query: 355 KHIDAIEKLIEKKVDWL 371 +IE + K+V+ L Sbjct: 355 YRFQSIEHFLGKEVEKL 371 >gi|256074311|ref|XP_002573469.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni] gi|238658649|emb|CAZ29701.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni] Length = 879 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 138/351 (39%), Positives = 203/351 (57%), Gaps = 6/351 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F++ G ++ + + + PTPIQ + P+ L D+ GIAQTG+GKTASF+LP + + Sbjct: 79 FSEAGFPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAI-V 137 Query: 63 LEKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 K + ++ P LIL PTRELA QV E + + A L GG Q + L Sbjct: 138 HAKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEAL 197 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + +V+I TPGR+LD M LV+DEADRMLDMGF P I+ + S V RQ Sbjct: 198 GQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQ 257 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL++SAT E++ ++E+FL + +I V + +A V + S+K L LL Sbjct: 258 TLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNE-SEKFKRLLSLL 316 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 S D + ++F KK LC L+ +GF A+HG+ Q+ R + L F+EG I ++ Sbjct: 317 NSFDNAR-VLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREGHISVL 375 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA 350 VA+D+A+RGLDI DV ++ N+D P++ E+YIHRIGRTGR+ + G A+T + Sbjct: 376 VATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFS 426 >gi|224088162|ref|XP_002308349.1| predicted protein [Populus trichocarpa] gi|222854325|gb|EEE91872.1| predicted protein [Populus trichocarpa] Length = 509 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 214/381 (56%), Gaps = 19/381 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA++ L V + YVKPTP+Q IP++L D+ AQTG+GKTA+F P++ Sbjct: 54 FAEIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIAG 113 Query: 63 LEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + + + R P LIL PTREL+ Q+ D +K+ + V ++ GG P Q Sbjct: 114 IMREQYVQRPHGGRTVYPLALILSPTRELSCQIHDEAKKFAYQTGVKVVVVYGGAPVNQQ 173 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 ++LERG DVL+ TPGR++D R ++ + I L +DEADRMLDMGF P I+ I + Sbjct: 174 LRELERGVDVLVATPGRLVDLVERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMD 233 Query: 176 FT----RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 RQT+LFSAT E+Q+++ +FL N + V S+ + I Y + K Sbjct: 234 MPPCGRRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQ--RVEYVHETDK 291 Query: 232 CALLQQLLQSQ-DTMKNG-----IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 + L LL +Q +T NG ++F KK +L H L F +IHG+ Q+ R Sbjct: 292 RSHLMDLLHAQRETEVNGKHSLTLVFVETKKGADSLEHWLYVNKFPATSIHGDRSQQERE 351 Query: 286 KILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA 345 L +FK G ++VA+D+AARGLDIP V HV NFD+PN ++Y+HRIGRTGRAG+ G A Sbjct: 352 MALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLA 411 Query: 346 FTLVAKEDIKHIDAIEKLIEK 366 + ++ + L+++ Sbjct: 412 TAFFNENNLSLARPLADLMQE 432 >gi|150864621|ref|XP_001383517.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS 6054] gi|149385877|gb|ABN65488.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS 6054] Length = 396 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 135/352 (38%), Positives = 206/352 (58%), Gaps = 13/352 (3%) Query: 21 YVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80 + KPTPIQ + IP L+ D+ G+AQTG+GKTA+F +P+L L + + L+L P Sbjct: 3 FSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYF---GLVLAP 59 Query: 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG 140 RELA Q+ + F+ G + L+GG+ Q + L R ++I TPGRI+DH Sbjct: 60 ARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHT 119 Query: 141 K-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL 199 K + ++ V+DEAD++LD+ F P + I +P R T LFSATMT++++K+ L Sbjct: 120 KGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLFSATMTNKIEKLQRASL 179 Query: 200 QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVV 259 NP R+ V++ TA+ + + Y K L LL ++ K+ IIF + + Sbjct: 180 HNPVRVAVSSKYQTADNLIQSMMLVSDGY--KNTYLIHLL-NEFVGKSIIIFARTRAHTQ 236 Query: 260 N---LCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGH 316 LC L GFS +HG++ Q R+ L+ FK GT +++A+D+AARGLDIP V Sbjct: 237 RTSILCRIL---GFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDV 293 Query: 317 VFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 V N+D+P ++ Y+HR+GRT RAGR GK+ +LV + D++ IE+ I+KK+ Sbjct: 294 VINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKL 345 >gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13] gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_19] gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 20_3] gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13] gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_19] gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 20_3] Length = 426 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 219/378 (57%), Gaps = 19/378 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L V+ + D + + TP+Q TIP++L+ D+ AQTGTGKTA++VLP++ Sbjct: 1 MRFDELDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 L KG +I+ PTRELA Q+ + G Y + VA+ G GI +E Sbjct: 61 NELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQ--GFTYFIPSVSAVAVYGGTDGIAWEQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LE GAD++I TPGR+L H G + ++ + V+DEADRMLDMGF I + + Sbjct: 119 QKRGLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231 P QT++FSATM +++ +++ L++P+ +++ P S +T C+ +K Sbjct: 179 PPYCQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICY------DPQK 232 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 +LQ L +Q + IIF + K V L +L++ F+V A+H +++Q R +++ F Sbjct: 233 LKILQDLF-TQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEF 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVA 350 K G I ++VA+D+ ARG+DI D+ V NFD+P+ E+Y+HRIGRT R G A T V+ Sbjct: 292 KSGHIDILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVS 351 Query: 351 KEDIKHIDAIEKLIEKKV 368 ++ IE +EK+V Sbjct: 352 IDEQAQFKRIEDFLEKEV 369 >gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R] gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R] Length = 389 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 210/374 (56%), Gaps = 16/374 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LGL ++ A+ + PT IQ++ +P LQ D+ G+A TG+GKTA+F LP+L Sbjct: 21 FKSLGLIDPLLEALEQLNFKIPTEIQVQALPHALQGRDIIGVASTGSGKTAAFALPILQK 80 Query: 63 LEKGRARVRMPRTL---ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + P+ L I+ PTRELA Q++ E G + L+GG+ AQ L Sbjct: 81 LWEE------PKGLFACIMAPTRELAYQISQQIEALGSAMGVRCVTLVGGMDKMAQAVAL 134 Query: 120 ERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 + +++ TPGR+ DH K + ++ LV+DEADR+LDM F P I I +P R Sbjct: 135 AKRPHIVVATPGRLNDHLEDTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKAIPRER 194 Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQQ 237 T LFSATMT ++ K+ L NP R+EV+ ST T+ ++ Q L Sbjct: 195 TTYLFSATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPLVQKDVHLIYLAN 254 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 +L +Q+++ IIF + L L GF +HG + Q +R+ L FK G + Sbjct: 255 IL-AQNSI---IIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRK 310 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR GK+ TLV + D++ I Sbjct: 311 VLVATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELI 370 Query: 358 DAIEKLIEKKVD-W 370 IE I KK++ W Sbjct: 371 QRIETTIGKKMELW 384 >gi|172040180|ref|YP_001799893.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109] gi|171851484|emb|CAQ04460.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109] Length = 497 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 142/375 (37%), Positives = 210/375 (56%), Gaps = 17/375 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F LG++ ++ A+ AG IQ T+P+ L+ D+ G A+TG GKT F +P+L Sbjct: 20 FRSLGVAAEIAEALEQAGMPTAFAIQELTLPIALRGDDLIGQARTGMGKTLGFGVPLLDR 79 Query: 63 LEKGRARVRMP---RTLILEPTRELAAQVADNFEKYGKN-------YNLTVALLIGGIPF 112 + + R L++ PTREL QVA++ N + +TV + GG+ F Sbjct: 80 IFDDAGITELDGSVRGLVVVPTRELCLQVAEDLTLATANLVIPANDHRVTVTPIYGGVGF 139 Query: 113 EAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITS 172 Q + L RG DV++ TPGR+LD RG+L ++ +E+LV+DEAD MLD GF+ I+ I S Sbjct: 140 NQQIRALSRGTDVVVGTPGRLLDLHRRGELELSGVEVLVLDEADEMLDQGFLDDIRQIMS 199 Query: 173 LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC 232 L RQT+LFSATM + +S F++ P I+ + STA H V A S K Sbjct: 200 LTSPDRQTMLFSATMPGPVLSLSREFMKQPVMIQAD---STAAADTHERVTQIAFQSHKL 256 Query: 233 ---ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 + L ++LQS + I+F K+ + L GF V A+HG++ Q R + L Sbjct: 257 DRMSTLSRILQSPGRGRT-IVFTPTKRQAAMVAEDLAAWGFRVGAVHGDMRQADREQSLQ 315 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 F++G + +MVA+D+AARG+D+ DV HV N+ VP Y+HRIGRT RAG+ G A TLV Sbjct: 316 LFRDGAVDVMVATDVAARGIDVTDVTHVVNYQVPEDERTYVHRIGRTARAGKDGTAITLV 375 Query: 350 AKEDIKHIDAIEKLI 364 +++ D I + + Sbjct: 376 GWDEVPRWDHISEAL 390 >gi|227524|prf||1705300A ATP dependent RNA helicase Length = 604 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 139/362 (38%), Positives = 205/362 (56%), Gaps = 19/362 (5%) Query: 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRA--------- 68 A + KPTP+Q ++P+V D+ AQTG+GKT F+ P+L+ + G + Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLKACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219 Query: 69 --RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126 R P +I+ PTRELA Q+ D +K+ + ++ GG P Q +++ERG D+L Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT----RQTLL 182 + TPGR+ D RGK+ + N++ LV+DEADRMLDMGF P I++I T RQTL+ Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT ++Q ++ +FL + + V ST+E I + Q KK ALL L S Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQ-DKKSALLDLLSAST 398 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 D + +IF K+ L L Q F AIHG+ Q R + L+ F+ G L+VA+ Sbjct: 399 DGLT--LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 +AARGLDIP+V HV N+D+P+ ++Y+HRIGRTGRAG G A E+ + + + Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516 Query: 363 LI 364 ++ Sbjct: 517 IL 518 >gi|261251704|ref|ZP_05944278.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891] gi|260938577|gb|EEX94565.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891] Length = 412 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 217/368 (58%), Gaps = 9/368 (2%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ L S +++ A L G+ KPT IQ IP ++ DV +A TG+GKT ++ LP+L Sbjct: 1 MSFSTLSFSSELIHA-LPQGFQKPTDIQALAIPELMAGKDVLALANTGSGKTLAYGLPLL 59 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 EK +A + + L+L PTRELA QV++ + G+ L L GG+ E Q + L Sbjct: 60 ---EKLKADTKQ-QALVLVPTRELAIQVSEALNQVGQTLGLNAVCLCGGVDKELQQQALA 115 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 ++L+ T GR++D N G L ++ ++ LV+DEADR+LDMGF P +Q I S V RQT Sbjct: 116 DSPNILVATTGRLVDLANNG-LDLSQVDYLVLDEADRLLDMGFWPDVQTIASQVSAKRQT 174 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 +FSAT +D+L++ ++ + PK++ + +ST + I + SK AL++ L Sbjct: 175 AMFSATFSDDLKQKAQQLMLAPKQVAAHQENSTNQDIAETLYLVN-KGSKTKALIE--LI 231 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q+T ++F K+N L L K G + A+HGN Q R + L+ FK G +++ Sbjct: 232 KQNTWSQVLVFIGAKENADGLAKKLNKAGITTNALHGNKSQVEREEALTLFKSGKTNVLI 291 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+DL ARG+ I + V NF++P AE Y+HR+GRT RAG+ G A +LV + + ++AI Sbjct: 292 ATDLLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGKQGVAMSLVCHGETEALNAI 351 Query: 361 EKLIEKKV 368 +L ++++ Sbjct: 352 RQLTQREL 359 >gi|323964518|gb|EGB59993.1| DEAD/DEAH box helicase [Escherichia coli M863] Length = 398 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 L P + + + GY+ TP+Q +P +L DV A+TG+GKTA+F L +L+K Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAF---GLGLLQKID 66 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126 A + + L+L PTRELA QVA + + N + L GG PF Q L+ ++ Sbjct: 67 ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 + TPGR+LDH +G + ++ + +LV+DEADRMLDMGF I ++ P +RQTLLFSAT Sbjct: 127 VATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246 + + +S ++P IE+++ + IE F T ++ K LLQ+LL S Sbjct: 187 WPEAITAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242 Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306 + ++FCN KK+ +C +L G S ++HG+++QR R + L F G+ +++VA+D+AA Sbjct: 243 SCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 RGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + I +++ Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 Query: 367 KVDWLNGDLSSLNPPLE 383 K++W ++S PLE Sbjct: 363 KLNWQTPPVNSSIVPLE 379 >gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23] Length = 478 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 149/420 (35%), Positives = 231/420 (55%), Gaps = 27/420 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F +LG+ + A Y PTPIQ K+IP+ LQ D+ G+A+TG+GKTA+F LP+L Sbjct: 59 FKELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPILQA 118 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+K + L+L PTRELA Q+ FE G + +L A+++GG+ Q L + Sbjct: 119 LLDKPQPLF----GLVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGK 174 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +++ TPGR++DH + K + ++ LV+DEADR+LDM F P I + +P R+T Sbjct: 175 KPHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRT 234 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 LFSAT++ +++ + L++P R+ V N + + +++ V Q K L+ Sbjct: 235 YLFSATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVV--PQKRKDTYLI--Y 290 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 L ++ T K+ I+F + L GF +HG + Q +R+ L+ F+ GT + Sbjct: 291 LVNEFTGKSTIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDI 350 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI V V N+D+P ++ YIHR+GRT RAG+ G A +LV + DI+ Sbjct: 351 LVATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEIFQ 410 Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNH----ARKNNPIPQKSTGF--DRRKKN 412 IE + KK+D P EK ++ H A++ I KS DRR K Sbjct: 411 RIEAALGKKLDIY---------PTEKEEVLAFQHRVEEAQREARIEMKSLSEKKDRRGKG 461 >gi|160940589|ref|ZP_02087933.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC BAA-613] gi|158436549|gb|EDP14316.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC BAA-613] Length = 490 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 210/362 (58%), Gaps = 6/362 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F GLS ++ + GY PT +Q + +P VL +V +QTGTGKTA+F +P + Sbjct: 13 FGGYGLSGEITETLALLGYEHPTRVQEEVLPHVLAGRNVVVRSQTGTGKTAAFAIP---V 69 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E+ +P+ L+LEP+RELA QV+ + G+ L V + GG P + Q + L + Sbjct: 70 CEQIVWEENLPQALVLEPSRELAVQVSQEIFRIGRKKRLKVPAVFGGFPIDKQIQTLRQK 129 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 +++ TPGR++DH RG L + + LVIDEAD MLDMGF+ ++ I L+P RQTLL Sbjct: 130 THIVVGTPGRVMDHVRRGSLKLTGVRYLVIDEADLMLDMGFMDEVRQIVGLLPEKRQTLL 189 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSAT+ ++++ ++E +++ + + T I V AQ K A + L+ + Sbjct: 190 FSATLDEDVKNLAEETVKDAVSVFLEQEGETPLPIRQS-VYGVAQDQKYTAFKRVLM--K 246 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + + +IFC ++ V L L + IHG+++Q+ R+K + F+ G + ++A+ Sbjct: 247 ENPERAMIFCGTREMVQVLFQKLRRDRIFCGMIHGDMEQKERLKNVDAFRRGGFRYLIAT 306 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 D+AARG+D DVG V N+D P E Y+HRIGRTGR G+ G+A +LV +++I+ + E Sbjct: 307 DVAARGIDFEDVGLVVNYDFPMGRETYVHRIGRTGRNGKAGRAASLVTEDEIRTLHKAEA 366 Query: 363 LI 364 + Sbjct: 367 YV 368 >gi|148184|gb|AAA67581.1| unknown [Escherichia coli str. K-12 substr. MG1655] Length = 421 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L PKVV A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E + L + L GG ++ Q K Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + IEV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELF---YPSNEEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q L++ ++ IIF N K + L G V + G++ Q+ R++IL F G Sbjct: 248 QTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AA GL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAAXGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|15803103|ref|NP_289134.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 EDL933] gi|12516997|gb|AAG57692.1|AE005488_3 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933] Length = 444 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 138/356 (38%), Positives = 205/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L+ DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLIXDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51] gi|118595827|sp|Q2H1Q8|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3 gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51] Length = 493 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 215/369 (58%), Gaps = 10/369 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-T 61 F DLG+ + A + G+ KPTPIQ ++IPL LQ D+ G+A+TG+GKT +F LP+L Sbjct: 67 FQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQA 126 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+K + L+L PTRELAAQ+A +FE G +L AL++GG+ Q L + Sbjct: 127 LLDKPQPLF----ALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGK 182 Query: 122 GADVLICTPGRILDHFNRGK-LLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 V++ TPGR+LDH + K + N+ LV+DEADR+LDM F P + I +P R+T Sbjct: 183 KPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLPRERRT 242 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPS-STAETIEHCFVATYAQYSKKCALLQQLL 239 LFSATM+ +++ + L++P ++ +++ T T+ +V + ++ K L L Sbjct: 243 FLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYV--FIPHTHKDTYLIYLC 300 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 ++ + IIF + L G +HG + Q +R+ L+ F+ G+ ++ Sbjct: 301 -NEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDIL 359 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VA+D+AARGLDIP+V V N D+P ++ Y+HR+GRT RAGR G A + V + D++ Sbjct: 360 VATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDLELWLR 419 Query: 360 IEKLIEKKV 368 IE + K+ Sbjct: 420 IEAALGTKL 428 >gi|259907666|ref|YP_002648022.1| ATP-dependent RNA helicase SrmB [Erwinia pyrifoliae Ep1/96] gi|224963288|emb|CAX54773.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96] gi|283477516|emb|CAY73432.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163] Length = 442 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 133/353 (37%), Positives = 204/353 (57%), Gaps = 4/353 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ ++ + G+ +PT IQ + IP L+ DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LIL PTRELA QVAD + K+ +L +A + GG+ F + Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV++ T GR+L + +E L++DEADRMLDMGF I+ I++ + +QTL Sbjct: 126 NQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTL 185 Query: 182 LFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ E ++ +E L P IE + + I+ + K ALL LL+ Sbjct: 186 LFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRA-DDIKHKTALLLHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Q + ++F +++ V +C L + G + + G + Q R + + +G + ++V Sbjct: 245 -QPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+AARG+DI DV HV NFD+P ++ Y+HRIGRTGRAG+ G A +LV D Sbjct: 304 ATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHD 356 >gi|325274041|ref|ZP_08140194.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp. TJI-51] gi|324100824|gb|EGB98517.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp. TJI-51] Length = 504 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 121/319 (37%), Positives = 199/319 (62%), Gaps = 7/319 (2%) Query: 51 KTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGG 109 KTA+F LP+L ++ + R P+ LIL PTRELA QVA FE Y K + V + GG Sbjct: 1 KTAAFALPILNKIDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGG 57 Query: 110 IPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQN 169 P Q + + GA +++ TPGR+ DH R + +++ ++ LV+DEAD ML +GF+ ++ Sbjct: 58 APMGPQLRAIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEV 117 Query: 170 ITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYS 229 I +P TRQT+LFSAT+ ++ ++E L+ PK +++ + + T I+ + +A Sbjct: 118 IFDAIPATRQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHA--D 175 Query: 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILS 289 +K + +LL+ ++ I F K+ ++L +LE +G+ A++G+I Q R +++ Sbjct: 176 QKIPAVLRLLEVEE-FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVID 234 Query: 290 NFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 + K+G + ++VA+D+AARGLD+P + HVFN D+P E+Y+HRIGRTGRAGR G+A LV Sbjct: 235 SLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLV 294 Query: 350 AKEDIKHIDAIEKLIEKKV 368 + + + IE++ +KV Sbjct: 295 TPRERRMLQVIERVTGQKV 313 >gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] Length = 375 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 212/368 (57%), Gaps = 6/368 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+F LG+S +V + + G +PTP+Q ++I L+ DV +QTGTGKT +F+LP Sbjct: 1 MNFNQLGISEDIVKILKNNGITEPTPVQAESISLIKNGRDVIVESQTGTGKTLAFLLP-- 58 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 I E +V + LIL PTRELA Q+ + K + ++ + GG +Q KKL+ Sbjct: 59 -IFENISTKVDAVQALILTPTRELALQITEEALKLKQAKDINILAAYGGKDIGSQLKKLK 117 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 G ++I TPGR+LDH R + ++ ++ V+DEAD+ML MGF ++ I RQT Sbjct: 118 TGIHLIIATPGRLLDHLERKTIDLSKLKTFVLDEADQMLLMGFKNDVETIIKETSKKRQT 177 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 L FSAT+ ++++++ + + P + +N T + I+ V T K+ AL L Sbjct: 178 LCFSATINSDVKRLAYRYTKEPLAVTINKEEVTLDAIKQQVVET-TDRRKQDALCTVL-- 234 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 +QD IIFC K+ V L SL K+G +H +I Q R +I+ F+ G Q ++ Sbjct: 235 NQDNPYMAIIFCRTKRRVDELEVSLYKRGCDCKKLHSDILQSKRERIMKAFRNGDFQYLI 294 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+A+RGLDI V H++N+D+P AE+YIHRIGRTGRAG G + +D ++ I Sbjct: 295 ATDVASRGLDISGVSHIYNYDIPESAESYIHRIGRTGRAGEEGYTCLFIDPKDRLRLEEI 354 Query: 361 EKLIEKKV 368 EK I+ K+ Sbjct: 355 EKAIKFKI 362 >gi|238749573|ref|ZP_04611078.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380] gi|238712228|gb|EEQ04441.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380] Length = 504 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 218/373 (58%), Gaps = 8/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L + + + + GY + TP+Q +P +L DV A+TG+GKTA+F + +L Sbjct: 50 FSSLTLPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGVLDK 109 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLER 121 + G + + L+L PTRELA QV+ + + N+ + L GG P Q L Sbjct: 110 IAVGEF---VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVH 166 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 +++ TPGRI +H + L++++++ILV+DEADRMLDMGF I ++ S P RQTL Sbjct: 167 APHIVVGTPGRIQEHLRKKTLILDDLKILVLDEADRMLDMGFADAIDDVISYTPPQRQTL 226 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSAT ++++S + P +EV+ A IE F T + K+ LL +L S Sbjct: 227 LFSATYPQGIEQISARVQRQPVNVEVDD-GDEAPAIEQVFFETTRE--KRLPLLISVL-S 282 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 ++ ++FCN KK+ N+ +LE +G SV A+HG+++QR R ++L F + +++VA Sbjct: 283 HYQPESCVVFCNTKKDCQNVYEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVA 342 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+AARGLDI D+ V NF++ E ++HRIGRTGRAG G A +L +++ AIE Sbjct: 343 TDVAARGLDIKDLALVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIE 402 Query: 362 KLIEKKVDWLNGD 374 ++ K+ W D Sbjct: 403 DYLQMKLKWTPAD 415 >gi|149276646|ref|ZP_01882789.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39] gi|149232315|gb|EDM37691.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39] Length = 376 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 134/377 (35%), Positives = 225/377 (59%), Gaps = 7/377 (1%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F+ LGL+P ++ A+ D + +PT IQ IP +L + DV GIA+TG+GKTA +VLP+L Sbjct: 1 MPFSSLGLTPALLIALADQQFNEPTAIQQTVIPAILAKKDVLGIAKTGSGKTAGYVLPVL 60 Query: 61 TILEKGRA-RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL--IGGIPFEAQNK 117 T L++ + R L+L PTRELA QV + F+ + + V L GG+ Q Sbjct: 61 TNLQQSLGPKNRHANVLVLVPTRELAEQVKEVFKTFSTSLPEAVKTLAVYGGVSINTQMM 120 Query: 118 KLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 L+ G +VL+ TPGR+L+ + ++++E L++DEAD+ML++GF + I +L+P Sbjct: 121 ALQ-GVNVLVGTPGRLLELVAANSVNLSSVETLILDEADKMLNLGFKEEVNKIIALLPAK 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQ +LFSAT++ +++ + + L +P +++ + E I A KK L+ Sbjct: 180 RQNVLFSATLSKDIEHIHQLLLHDPVVVKIEEGEDSLELITQT--AYIVSEDKKGPFLRS 237 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L++ + MK ++F + V + + L+K A H Q +R L++FK G I+ Sbjct: 238 LIK-KHRMKQVLVFASSIHQVEAIVNKLQKNKIDAKAFHSKKSQGNRTDSLAHFKFGRIK 296 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+DL ARG+DI + +V N+++P ++Y+HRIGRTGRAG G+A +LV+ ++ H Sbjct: 297 VLVATDLMARGIDIDGLPYVINYELPRSPKDYVHRIGRTGRAGNTGEAISLVSHNELHHF 356 Query: 358 DAIEKLIEKKVDWLNGD 374 + I+K + K+V ++ + Sbjct: 357 EVIQKKMGKQVPLIDSE 373 >gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4] gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4] Length = 1676 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 141/362 (38%), Positives = 204/362 (56%), Gaps = 3/362 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + LS ++ + + PTPIQ KTIP+ L D+ G A TG+GKTA+FV+P+L Sbjct: 792 FQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 851 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L +V R IL PTRELA Q + K ++T L+GG Q L++ Sbjct: 852 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKR 911 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 DV+I TPGR +DH N ++ +EILV+DEADRML+ GF + I + +P +RQT+ Sbjct: 912 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTM 971 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATY-AQYSKKCALLQQLLQ 240 LFSATMTD + K+ L P R+ V+T +TA T+ FV + K+ L L + Sbjct: 972 LFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCK 1031 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 T + I+F QKK + G +HG++ Q R+K + +F++G + ++ Sbjct: 1032 EVYTGRV-IVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLL 1090 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+DLA+RGLDI V V N++ P E Y+HR+GRT RAGR G+A T+ A+ D K + A Sbjct: 1091 ATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAA 1150 Query: 361 EK 362 K Sbjct: 1151 VK 1152 >gi|149927779|ref|ZP_01916031.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105] gi|149823605|gb|EDM82835.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105] Length = 617 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 218/375 (58%), Gaps = 12/375 (3%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP-- 58 M F D+GL+ ++ A+ PT +Q + +PL D+ +QTG+GKT F+LP Sbjct: 1 MSFDDMGLAAPLLQALNALNITAPTLVQQEVVPLGKDGGDLMVSSQTGSGKTFGFLLPVM 60 Query: 59 --MLTILEKGRARVRMPRTLILEPTRELAAQVAD---NFEKYGKNYNLTVALLIGGIPFE 113 M+T + + P L+L PTRELA QV+ N K+ K + VA ++GG+P+ Sbjct: 61 HRMMTGEQSPMEMLAGPECLVLCPTRELAQQVSQDAINLVKFTKG--VRVATVVGGMPYG 118 Query: 114 AQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q L RGA +++ TPGR+LD +GKL ++ + L++DEADRMLD+GF ++ I L Sbjct: 119 KQMASL-RGARIVVGTPGRLLDLAQQGKLNLSTVTTLIVDEADRMLDLGFSEDLEAIDQL 177 Query: 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 QTL+FSAT + ++EN + NPKRIE+ + I + + K+ Sbjct: 178 CGNRIQTLMFSATFAKRIIGLAENIMNNPKRIEMAAQNEANTDIAQKLMWADNRGHKR-K 236 Query: 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKE 293 LL L+ D M ++F + + + NL L +G CA+HG + Q R + L++ ++ Sbjct: 237 LLNHWLEHPD-MVQAVVFTSTQIDAENLARDLADEGVRACALHGGMPQVVRNRRLASVRK 295 Query: 294 GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 G I+++VA+D+AARGLD+P + HV N+ +P ++E+Y+HRIGRTGRAGR G A TL D Sbjct: 296 GDIKVLVATDVAARGLDVPAISHVINYGMPMKSEDYVHRIGRTGRAGRSGVAVTLAEACD 355 Query: 354 IKHIDAIEKLIEKKV 368 I + IE+ I ++ Sbjct: 356 IISVRGIERFINSRI 370 >gi|257455420|ref|ZP_05620655.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60] gi|257447382|gb|EEV22390.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60] Length = 391 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 224/384 (58%), Gaps = 18/384 (4%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+ L L P + A+ GY TPIQ + +P L D G AQTGTGKTA+F+L ++ Sbjct: 5 FSQLPLHPALKQAIDQLGYQTLTPIQAQILPNTLAGQDAIGQAQTGTGKTATFLLTIINE 64 Query: 63 LEK--------GRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114 L G + R L+L PTRELA Q+ + + K L L+GG +E Sbjct: 65 LLNNPLNPEIDGDRFLGETRALVLAPTRELAQQIYQDCLELTKFTELHTVCLLGGTDYET 124 Query: 115 QNKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL 173 Q+K+L ++ D++I TPGR++D + + ++ +EILV+DEADRMLDMGFIP I+ + + Sbjct: 125 QSKQLHQKFVDIIIATPGRLIDFCFQHHVYLDRLEILVLDEADRMLDMGFIPDIKRLIRM 184 Query: 174 VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 +P RQTLLFSAT ++ ++ +L P +E+ T++TIE F S K Sbjct: 185 MPANTHRQTLLFSATFNQDVMNLAYRWLYQPIFVEIAPEQKTSQTIEQLFFTLME--SDK 242 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 A LQQ+++ + + K I+F N+K V L L +Q + V + G++ Q R K L+ F Sbjct: 243 LAALQQIIE-KISPKKMIVFANRKDQVKRLYDKLNRQ-YKVVILSGDVIQAKREKYLAQF 300 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 ++G ++VA+D+A RG+ + DV V N+ +P+ ++Y+HRIGRTGRAG G + + +++ Sbjct: 301 RQGDANILVATDVAGRGIHVDDVACVVNYTLPDSPDDYVHRIGRTGRAGNKGMSISFISE 360 Query: 352 EDIKHIDAIEKLIEKKV---DWLN 372 D ++ AIE+ +++ + W N Sbjct: 361 NDGFNLPAIEQYLDESIKMQQWSN 384 >gi|213402583|ref|XP_002172064.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus yFS275] gi|212000111|gb|EEB05771.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus yFS275] Length = 854 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 138/391 (35%), Positives = 219/391 (56%), Gaps = 36/391 (9%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F +GLS ++ A+ G+ PTPIQ KTIP VL DV G+A+TG+GKTA+FV+PM+ Sbjct: 66 NFQSMGLSTTMLRAITKKGFKAPTPIQRKTIPFVLDGRDVVGMARTGSGKTAAFVIPMIE 125 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L+ RA+ R +IL P+RELA Q + + K+ NL A+++GG E Q L Sbjct: 126 KLKASRAQ-SGSRAIILSPSRELALQTMKVVKDFSKDTNLRTAVIVGGEGLEEQFSILTN 184 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ TPGR L KL + +IE +V DEADR+ +MGF + I +P +RQTL Sbjct: 185 KPDIIVATPGRFLHLKVEMKLELGSIEYVVFDEADRLFEMGFAAQLTEILHGLPSSRQTL 244 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF--VATYAQYSKKCALLQQL- 238 LFSAT+ L + ++ LQ P + ++ S + ++ F V T + + +LQ++ Sbjct: 245 LFSATLPKNLVEFAKAGLQEPILVRLDVESKVSSDLQSAFFSVKTAEREAALLYVLQEVI 304 Query: 239 -LQSQDTMK-------------------------------NGIIFCNQKKNVVNLCHSLE 266 L+ Q+ +K + I+F K +V + L+ Sbjct: 305 HLRLQEELKPAELPSQAENPKKRKRLLEHTLKKPETAASDSTIVFVPTKHHVEYITEMLK 364 Query: 267 KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRA 326 + G+ V I+G++DQ +R ++NF+ G ++V +D+AARG+DIP + +V N+D P + Sbjct: 365 QAGYGVSRIYGSLDQTARKNEITNFRLGVSNVLVVTDVAARGIDIPLLSNVVNYDFPAQP 424 Query: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 + ++HR+GRT RAGR G A+T V ED ++ Sbjct: 425 KIFVHRVGRTARAGRTGWAYTFVRAEDAGYL 455 >gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str. F0039] gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str. F0039] Length = 445 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 147/405 (36%), Positives = 231/405 (57%), Gaps = 20/405 (4%) Query: 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84 TPIQ IP +L + D+ G+AQTGTGKTA+++LP+L++L+ G +I+ PTREL Sbjct: 7 TPIQEACIPAILNKKDILGVAQTGTGKTAAYLLPVLSLLDNGGYPKDKINCIIMSPTREL 66 Query: 85 AAQVADNFEKYGKNYNL----TVALLIG--GIPFEAQNKKLERGADVLICTPGRILDHFN 138 A Q+ + G +Y L +VA+ G G ++ + K L+ GADV+I TPGR + H + Sbjct: 67 AQQIDQAMQ--GFSYYLQEVSSVAVYGGNDGNRYDQEIKSLKLGADVIIATPGRFISHLS 124 Query: 139 RGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENF 198 G + + + ++DEADRMLDMGF I I +P Q ++FSATM +++ ++ Sbjct: 125 LGNIDTSGVSFFILDEADRMLDMGFYDDIMTIAKELPPHCQNIMFSATMPPKIETLARTI 184 Query: 199 LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNV 258 L+NP+ I++ S AE I+ Y +K ++ L + D ++ IIF +K V Sbjct: 185 LKNPETIKLAV-SKPAEKIKQSAYVCYE--PQKLKIVTSLFNA-DNLQRVIIFSGKKDKV 240 Query: 259 VNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 ++ +L + + A+H ++ Q R +++ FK G I ++VA+D+ +RG+DI D+ V Sbjct: 241 KDINKALLSKKINSGAMHSDLSQAERDEVMFKFKAGQIDVLVATDIVSRGIDIDDIRMVI 300 Query: 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL-NGDLSS 377 N+DVP+ E+YIHRIGRT RA R GKA TLV+ ED+ + IE+ +EK +D N D Sbjct: 301 NYDVPHDVEDYIHRIGRTARADRDGKAITLVSDEDMFYFQQIEQFLEKTIDKTPNPDNIG 360 Query: 378 LNPPLEKIDIAQHNHARKNNPIPQKSTG---FDRRKKNYSSQKSH 419 P +K+ ARK + S+G F +R + + H Sbjct: 361 EGPEYKKV----QKFARKKGVKSRNSSGKASFKQRHYKETKNQQH 401 >gi|167035034|ref|YP_001670265.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida GB-1] gi|166861522|gb|ABY99929.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1] Length = 453 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 216/372 (58%), Gaps = 11/372 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML-- 60 F+ L +++ AV + +V+PTP+Q IPL LQ D+ AQTG+GKTA+FVLP+L Sbjct: 15 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 74 Query: 61 -TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L+ GR +R +LIL PTRELA Q + + + + L+ GG F+ Q L Sbjct: 75 LVDLKGGRVEIR---SLILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAML 131 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 + DVLI TPGR+L+ N G L ++++++L++DEADRMLDMGF ++ + Q Sbjct: 132 RKVPDVLIGTPGRLLEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQ 191 Query: 180 TLLFSATMTDE-LQKVSENFLQNPKRIEVNTPSSTAE-TIEHCFVATYAQYSKKCALLQQ 237 TLLFSAT L+ + L++P+ + +N+ S AE T + A + Q+ ++ A Q Sbjct: 192 TLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIA---Q 248 Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 L + +T IIF N + + L + +HG DQ+ R + FK+G+ + Sbjct: 249 WLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSK 308 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 ++VA+D+AARGLDI + V NFD+P + Y+HR+GRTGRAG G A +L+ D + Sbjct: 309 VLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLM 368 Query: 358 DAIEKLIEKKVD 369 +IE+ ++++ + Sbjct: 369 SSIERYLKQQFE 380 >gi|160897857|ref|YP_001563439.1| DEAD/DEAH box helicase domain-containing protein [Delftia acidovorans SPH-1] gi|160363441|gb|ABX35054.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1] Length = 438 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 139/382 (36%), Positives = 210/382 (54%), Gaps = 22/382 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M+FA LGLSP +V ++ D G V PTPIQ ++I VL D+ A TG+GKTA+++LP+L Sbjct: 1 MNFASLGLSPALVSSLQDLGLVDPTPIQTQSIAPVLAGRDLWACAPTGSGKTAAYLLPLL 60 Query: 61 -------TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT--VALLIGGIP 111 VR TLI+ PTRELA QV + G+ + ++ GG+ Sbjct: 61 QRWMDGGKAQGAQGGFVRTLTTLIVVPTRELAQQVGETLSDLGRALKQPPRIGVVYGGVS 120 Query: 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 Q L AD L+ TPGR+LD + ++ + LV+DEADR+LD+GF +Q + Sbjct: 121 INPQMMMLRGSADFLVATPGRLLDLVEHNAVRLSAVRHLVLDEADRLLDLGFQDELQRVL 180 Query: 172 SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTP----SSTAETIEHCFVATYAQ 227 +L+P RQTLLFSAT D +Q ++ L +P + V+ +++ ++I +A Sbjct: 181 ALLPKQRQTLLFSATYPDAVQSLATGLLHDPVQARVDAAEGQDAASPQSITQRAIAV--D 238 Query: 228 YSKKCALLQQLLQSQD-------TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNID 280 +++ LL+QL+Q T++ ++F + + L K G A HG++ Sbjct: 239 RARRTQLLRQLVQGDTAAGTDPVTLERALVFVATRHTAELVAEKLYKAGIFATAFHGDLS 298 Query: 281 QRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAG 340 Q +R + L++FK Q+M+ +DLAARG+DI + V N+D+P A +Y+HRIGRTGRAG Sbjct: 299 QGARKEALADFKAKRWQVMITTDLAARGIDITQLPLVVNYDLPRSATDYVHRIGRTGRAG 358 Query: 341 RHGKAFTLVAKEDIKHIDAIEK 362 G A + V D H I K Sbjct: 359 EDGTAISFVTPADQAHWALICK 380 >gi|319955577|ref|YP_004166844.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM 14237] gi|319424237|gb|ADV51346.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM 14237] Length = 449 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 210/370 (56%), Gaps = 4/370 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F D L ++ A+ D + PTPIQ +V+ D+ GIAQTGTGKT +++LP+L Sbjct: 4 FEDFNLKKQLNYAIEDLKFSAPTPIQEAAFSVVMSGKDIVGIAQTGTGKTMAYMLPILQ- 62 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 E ++ PR L+L PTREL QV +N E + K N+ V + GG Q ++ +G Sbjct: 63 -EITFSKQIHPRVLVLVPTRELVLQVVENIESFAKYINIRVLGVYGGTNINTQKQQCAQG 121 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 D+L+ TPGR+ D + + ++ LVIDE D MLD+GF + N+ L+P RQ ++ Sbjct: 122 TDILVATPGRLYDLALSKAVKLKEVKKLVIDEVDVMLDLGFRFQLINLFDLLPARRQNIM 181 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATMTD++ + ++F P+++ + + + I+ A Y+ K LL +LL+ + Sbjct: 182 FSATMTDDVDALIDDFFTAPEKVSIAVSGTPLDNIKQVCYAVPNFYT-KINLLIRLLKDK 240 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 DT + ++F + K+ + +E G C IH N Q RM+ + F EG +++V Sbjct: 241 DTYQKVLVFVSNKRFADKVFEEMEVAFGNESCVIHSNKTQNYRMRSIRQFDEGKNRILVT 300 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+ ARGLD+ + HV NFD PN ENY+HRIGR+GRA G + +++ +AIE Sbjct: 301 TDVMARGLDLDKITHVINFDTPNYPENYMHRIGRSGRAEHQGNSVLFYTEKEEPLKEAIE 360 Query: 362 KLIEKKVDWL 371 L++ ++ + Sbjct: 361 ALMDYEIPLM 370 >gi|50547049|ref|XP_500994.1| YALI0B16896p [Yarrowia lipolytica] gi|74660102|sp|Q6CEB8|DRS1_YARLI RecName: Full=ATP-dependent RNA helicase DRS1 gi|49646860|emb|CAG83247.1| YALI0B16896p [Yarrowia lipolytica] Length = 753 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 216/381 (56%), Gaps = 13/381 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F L LS V+ + GY PTPIQ +TIP+ L D+ A TG+GKTA++++P+L Sbjct: 254 FQTLNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLER 313 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLER 121 L ++V + ++L PTREL+ QVAD +K + + + L +GG+ Q ++L+ Sbjct: 314 LLYKSSKVAATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKT 373 Query: 122 GADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 +V+I TPGR +DH N ++++EILVIDEADRML+ GF + I +L+P RQT Sbjct: 374 RPEVVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLPKKRQT 433 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATM + + + L P R+ +N P A + FV + K ALL +L+ Sbjct: 434 LLFSATMNSSISSLIQLSLSRPVRVMINPPKQAASGLVQEFVRIRKRDHLKPALLASILK 493 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + IIF +K+ L L G + +HG + Q R++ ++ FK+ + ++V Sbjct: 494 KMDKEQRTIIFVARKETAHRLRIMLGLLGVRIGELHGALSQEQRLQSITAFKKLEVPILV 553 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA---------K 351 +DLA+RGLDIP + V N+D+P Y+HR+GRT RAGR G++ TLV + Sbjct: 554 CTDLASRGLDIPKIECVVNYDMPQTHAVYLHRVGRTARAGREGRSITLVGEAAADRAIVR 613 Query: 352 EDIKHIDAIE--KLIEKKVDW 370 E IK + + K + + VDW Sbjct: 614 EAIKSVSESKQGKAVGRNVDW 634 >gi|294626035|ref|ZP_06704645.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599705|gb|EFF43832.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 458 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 145/381 (38%), Positives = 213/381 (55%), Gaps = 9/381 (2%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ L LSP + + GY TPIQ +++P +LQ DV A TG+GKTA+F L +L Sbjct: 3 EFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGLLQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L+ R + L+L PTRELA QV + N+ + +L GG+P Q LE Sbjct: 63 KLDPALTRAQ---ALVLCPTRELADQVGKQLRRLATGIPNMKLVVLTGGMPLGPQLASLE 119 Query: 121 -RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 V++ TPGRI + + L + + LV+DEADRMLDMGF I+ I S RQ Sbjct: 120 AHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQ 179 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 +LLFSAT D ++ ++ L+ P I V S E I+ F Y +K A+ LL Sbjct: 180 SLLFSATFPDSIRALARELLKEPVEITVEGADSAPE-IDQQFFEVDPTYRQK-AVAGLLL 237 Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299 + ++ ++FCN +K V + SL++ GFS A+HG+++QR R ++L F + ++ Sbjct: 238 RFNP--ESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVL 295 Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359 VASD+AARGLD+ D+ V N+++P E Y HRIGRT RAG+HG A +LVA + A Sbjct: 296 VASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETTRAQA 355 Query: 360 IEKLIEKKVDWLNGDLSSLNP 380 +E + + W L++ P Sbjct: 356 LETEQGQPLKWSRAPLATARP 376 >gi|225011120|ref|ZP_03701583.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium MS024-3C] gi|225004754|gb|EEG42713.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium MS024-3C] Length = 455 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 209/367 (56%), Gaps = 4/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + L+ + + + GY PTPIQ T VL DV G+AQTGTGKT +++LP+L Sbjct: 9 FEEFNLNTPLKNNLSEVGYEVPTPIQGATYASVLSGQDVLGLAQTGTGKTLAYLLPILND 68 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L+ A+ + R L++ PTREL +QV + EK +N + V + GG + L + Sbjct: 69 LK--FAKEKTVRALVIVPTRELVSQVVEEAEKICQNTFIRVCGVHGGNSMKKDRDALAQS 126 Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 AD+++ TPGR+ D F + I+ +VIDE D MLD+GF + NI L+P RQ ++ Sbjct: 127 ADIIVATPGRLYDLFLARVIKYAAIKKVVIDEVDVMLDLGFRFQLTNIFDLLPKKRQHIM 186 Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242 FSATMTDE++ + +F PKRI + + + I A Y K LLQ LL+ + Sbjct: 187 FSATMTDEIESLISDFFIAPKRIYIAMSGTPLKNIAQTAYAV-PNYYTKVNLLQHLLEQE 245 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQ-GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 +T K ++F + KK + LE ++ +H N Q R ++LS F G I++++A Sbjct: 246 ETFKKVLVFVSNKKIADRIYEQLEPVFEKNIGIVHANKTQNHRNRVLSAFDAGRIRIVIA 305 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +DL ARGLDI + HV NFD P ENY+HRIGRTGRA G + L E++ + +AIE Sbjct: 306 TDLVARGLDIDQISHVINFDTPKYPENYMHRIGRTGRANADGNSILLHNPEELAYKEAIE 365 Query: 362 KLIEKKV 368 L++ V Sbjct: 366 TLMQIAV 372 >gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10] gi|150857630|gb|EDN32822.1| p68 RNA helicase [Botryotinia fuckeliana B05.10] Length = 473 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ PTPIQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 63 FDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 122 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 123 INAQPLLAPGDG----PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQI 178 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L +G +V I TPGR++D GK + + LV+DEADRMLDMGF P I+ I + Sbjct: 179 RDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRP 238 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E++ ++ ++L ++ + + +A V +++ K+ + + Sbjct: 239 DRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTK 298 Query: 237 QLLQSQDTMKNGI-IFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + N I IF K+ ++ L + G+ +IHG+ Q R +L+ FK G Sbjct: 299 HLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 358 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ ++ HVFN+D PN +E+YIHRIGRTGRAG+ G A TL ++ K Sbjct: 359 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQK 418 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 419 QARDLVNVLTEAK 431 >gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7] Length = 426 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 219/378 (57%), Gaps = 19/378 (5%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 M F +L L V+ + D + + TP+Q TIP++L+ D+ AQTGTGKTA++VLP++ Sbjct: 1 MRFDELDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVI 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNL----TVALLIG--GIPFEA 114 L KG +I+ PTRELA Q+ + G Y + VA+ G GI +E Sbjct: 61 NELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQ--GFTYFIPSVSAVAVYGGTDGIAWEQ 118 Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 Q + LE GAD++I TPGR+L H G + ++ + V+DEADRMLDMGF I + + Sbjct: 119 QKRGLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQL 178 Query: 175 PFTRQTLLFSATMTDELQKVSENFLQNPKRIEV---NTPSSTAETIEHCFVATYAQYSKK 231 P QT++FSATM +++ +++ L++P+ +++ P S +T C+ +K Sbjct: 179 PPYCQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICY------DPQK 232 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 +LQ L +Q + IIF + K V L +L++ F+V A+H +++Q R +++ F Sbjct: 233 LKILQDLF-TQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEF 291 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVA 350 K G I ++VA+D+ ARG+DI D+ V NFD+P+ E+Y+HRIGRT R G A T V+ Sbjct: 292 KSGHIDILVATDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVS 351 Query: 351 KEDIKHIDAIEKLIEKKV 368 ++ IE +EK+V Sbjct: 352 IDEQAQFKRIEDFLEKEV 369 >gi|195399942|ref|XP_002058578.1| GJ14499 [Drosophila virilis] gi|194142138|gb|EDW58546.1| GJ14499 [Drosophila virilis] Length = 733 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 143/389 (36%), Positives = 212/389 (54%), Gaps = 12/389 (3%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DFA+ L VV + GY PTPIQ + P+ + + GIA+TG+GKT ++LP + Sbjct: 283 DFAEAYLPDYVVKEIRRQGYKSPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIV 342 Query: 62 IL--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 + ++ R P L+L PTRELA Q+ ++G + + + GG P Q + L Sbjct: 343 HINNQQPLQRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 402 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 +RG +++I TPGR++D + G + LV+DEADRMLDMGF P I+ I S + RQ Sbjct: 403 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 462 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 TL++SAT E+++++E+FL N +I + + +A V ++SK+ L L Sbjct: 463 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLS 522 Query: 240 QSQDTMKNG---IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 DT +N IIF K+ V NL + G AIHG+ Q R +L F+ G Sbjct: 523 DIYDTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 582 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGLD+ + +V NFD P +E+YIHRIGRTGR+ G +F K + K Sbjct: 583 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 642 Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385 A+ VD L +NP LE + Sbjct: 643 AKAL-------VDVLREANQEINPALENL 664 >gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis] gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis] Length = 515 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 216/367 (58%), Gaps = 7/367 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 + DLGL+ + A + + P+ IQ + IP+ LQ D+ G+A+TG+GKT +F LP+L Sbjct: 61 WKDLGLNETLCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILHA 120 Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122 L + R L+L PTRELA Q+ + FE G + +++GG+ AQ +L + Sbjct: 121 LLENPQRYF---ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKK 177 Query: 123 ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR++DH N + I+ LV+DEADR+L+M F + I ++P R+T Sbjct: 178 PHIIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTF 237 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQS 241 LFSATMT +++K+ L++P ++EV+ T + ++ ++ +Y K L +L + Sbjct: 238 LFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKY--KDVYLVHIL-N 294 Query: 242 QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 + + +IFC+ N V L G + +HG + Q R+ L+ FK ++++ Sbjct: 295 ELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIS 354 Query: 302 SDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIE 361 +D+A+RGLDIP V V NFD+P +++YIHR+GRT RAGR G+A T+V + DI+ IE Sbjct: 355 TDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRIE 414 Query: 362 KLIEKKV 368 +L+ K++ Sbjct: 415 QLLGKQL 421 >gi|134034065|sp|A2QC74|DBP2_ASPNC RecName: Full=ATP-dependent RNA helicase dbp2 gi|134056301|emb|CAK37534.1| unnamed protein product [Aspergillus niger] Length = 565 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ +PT IQ + P+ L DV GIA+TG+GKT ++ LP + Sbjct: 139 FDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 198 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P LIL PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 199 INAQPLLAPGDG----PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 254 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 255 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 314 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E+++++ +FL + ++ + + +A V + + K+ +++ Sbjct: 315 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 374 Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + N +IF K+ + L + G+ +IHG+ Q+ R +L+ FK G Sbjct: 375 HLEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 434 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A T ++ K Sbjct: 435 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 494 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 495 QARDLVTILTEAK 507 >gi|218689333|ref|YP_002397545.1| ATP-dependent RNA helicase DbpA [Escherichia coli ED1a] gi|218426897|emb|CAR07752.2| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli ED1a] Length = 457 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 L P + + + GY+ TP+Q +P +L DV A+TG+GKTA+F L +L ++ Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126 A + + L+L PTRELA QVA + + N + L GG PF Q L+ ++ Sbjct: 67 ASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHII 126 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 + TPGR+LDH +G + ++ + LV+DEADRMLDMGF I ++ P +RQTLLFSAT Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246 + + +S ++P IE+N+ + IE F T ++ K LLQ+LL S Sbjct: 187 WPEAIAAISGRVQRDPLAIEINS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242 Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306 + ++FCN KK+ ++C +L + G S ++HG+++QR R + L F G+ +++VA+D+AA Sbjct: 243 SCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 RGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + I +++ Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 Query: 367 KVDWLNGDLSSLNPPLE 383 K++W +S PLE Sbjct: 363 KLNWQTLPANSSIVPLE 379 >gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2] Length = 564 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 145/398 (36%), Positives = 225/398 (56%), Gaps = 24/398 (6%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA+LG+ + A+ G V P PIQ +IP+ ++ D+ G A+TGTGKT +F + +L Sbjct: 55 FANLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114 Query: 63 L----EKGRARVRM---PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 + ++G + P+ L++ PTRELA QV+ + V + GG+ +E+Q Sbjct: 115 ITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQ 174 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP 175 L+ G DV++ TPGR+LD R L ++++ I+V+DEAD MLD+GF+P ++N+ P Sbjct: 175 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 234 Query: 176 FTRQTLLFSATMTDELQKVSENFLQNPKRIE---VNTPSSTAETIEHCFVATYAQYSKKC 232 +RQT+LFSATM + ++ + L+ P + +T ++ +T + + A K Sbjct: 235 ASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY---QAHPLDKI 291 Query: 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFK 292 ++ ++LQ+ D K IIFC K+ L L+ +GF AIHG++ Q +R K L F+ Sbjct: 292 EIIGRILQANDVEKV-IIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFR 350 Query: 293 EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE 352 G ++VA+D+AARG+D+ V HV N + P + Y+HRIGRTGRAG G A TLV Sbjct: 351 HGEATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWA 410 Query: 353 DIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH 390 D+ KLI K LN +LS P+E + H Sbjct: 411 DVTRW----KLINKA---LNLELSE---PVETYSTSPH 438 >gi|325183171|emb|CCA17628.1| putative RNA helicase [Albugo laibachii Nc14] Length = 1157 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 139/382 (36%), Positives = 211/382 (55%), Gaps = 11/382 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F + V+ V+ G+ KPTPIQ + P+ L D+ GI+ TG+GKT +F+LP + Sbjct: 755 FEEASFPAYVLEEVMRLGFQKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIVH 814 Query: 63 ------LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 LE G P LI+ PTRELA Q+ K+G + + + GG+P Q Sbjct: 815 INAQPHLEPGDG----PIVLIIAPTRELAVQIQQEANKFGASSKIKNTCVYGGVPKYNQI 870 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 +L +G ++ ICTPGR++D ++GK + + LV+DEADRMLDMGF P ++ I S + Sbjct: 871 MELRQGVEICICTPGRMIDLLSQGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRP 930 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQTL++SAT E+ ++ +FL + ++ V + TA V + K AL+ Sbjct: 931 DRQTLMWSATWPKEIVSLAHDFLTDYIQVTVGSLELTANKKIEQIVEVMDDHQKYNALVA 990 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L D + I+FC K+ L +L + AIHGN Q R +L +FK+G Sbjct: 991 HLRVIYDGGRI-ILFCETKRGADELSRNLRNSRYICKAIHGNKSQEERDYVLKDFKQGKT 1049 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 Q++VA+D+A+RGLDI D+ +V NFD+P E+YIHRIGRT RAG G A + ++ + Sbjct: 1050 QILVATDVASRGLDIKDIRYVINFDMPKNVEDYIHRIGRTARAGSKGTAISFFTSDNGRL 1109 Query: 357 IDAIEKLIEKKVDWLNGDLSSL 378 + +++E+ + L SL Sbjct: 1110 ASPLIRVLEEANQQVPAALRSL 1131 >gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii] Length = 679 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 137/346 (39%), Positives = 207/346 (59%), Gaps = 13/346 (3%) Query: 16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR------AR 69 V A Y+KPTP+Q +IP++L+ D+ AQTG+GKTA+F+LP+LT + K + Sbjct: 315 VAKAKYLKPTPVQKYSIPIILRGRDLMSCAQTGSGKTAAFLLPVLTGMIKSGLSGSSFSE 374 Query: 70 VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICT 129 P+ L++ PTRELA Q+ K+ + L + GG + Q ++L RG ++L+ T Sbjct: 375 AVEPQALVITPTRELALQIHHEALKFAYSTILRPVVCYGGTSVQHQLRELSRGCNLLVAT 434 Query: 130 PGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL--VPFT--RQTLLFSA 185 PGR+LD +GK+ + ++ L++DEADRMLDMGF P I+ + + +P RQTL+FSA Sbjct: 435 PGRLLDFVGKGKVGLGKLKYLILDEADRMLDMGFEPEIRRLVASPNMPSKEDRQTLMFSA 494 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL---QSQ 242 T +E+QK++ +FL + + V T IE V +Q+ KK L++ L+ S Sbjct: 495 TFPEEIQKLAGDFLNDYIFLTVGRVGGTTPDIEQSVVQMESQFQKKEKLMEILIDVISSF 554 Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302 + ++F K++ + L + GF +IHG+ QR R + LS FK G ++VA+ Sbjct: 555 PGTEKVVVFVETKRSADFVASYLSQSGFPTTSIHGDRLQREREEALSCFKRGETPVLVAT 614 Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTL 348 +AARGLDIP V HV NFD+P+ + Y+HRIGRTGR G GKA + Sbjct: 615 SVAARGLDIPGVKHVVNFDLPDNIDEYVHRIGRTGRVGNIGKAVSF 660 >gi|311281534|ref|YP_003943765.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter cloacae SCF1] gi|308750729|gb|ADO50481.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1] Length = 421 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 143/373 (38%), Positives = 210/373 (56%), Gaps = 11/373 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 F+D L P V+ A+ G+ TPIQ +PL L DV G AQTGTGKT +F+ Sbjct: 11 FSDFALHPTVIEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70 Query: 63 LEKGRA----RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 L A +V PR LI+ PTRELA Q+ + E L + L GG ++ Q K Sbjct: 71 LLSHPAMENRQVNQPRALIMAPTRELAVQIHADAEPLASASGLKLGLAYGGDGYDKQLKV 130 Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178 LE G D+LI T GR++D+ + + + I+++V+DEADRM D+GFI I+ + +P Sbjct: 131 LENGVDILIGTTGRLIDYARQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190 Query: 179 QTL--LFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALL 235 Q L LFSAT++ +++++ + N + +EV T I E F Y +K LL Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELF---YPSNDEKMRLL 247 Query: 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 Q LL+ ++ IIF N K ++ L G V + G++ Q+ R++IL F G Sbjct: 248 QTLLE-EEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 306 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 + ++VA+D+AARGL IP V HVFN+D+P+ E+Y+HRIGRTGRAG G + +L +E Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSVSLACEEYAL 366 Query: 356 HIDAIEKLIEKKV 368 ++ AIE I + Sbjct: 367 NLPAIETYIGHSI 379 >gi|16130501|ref|NP_417071.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|89109382|ref|AP_003162.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. W3110] gi|170082185|ref|YP_001731505.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|238901741|ref|YP_002927537.1| ATP-dependent RNA helicase [Escherichia coli BW2952] gi|134878|sp|P21507|SRMB_ECOLI RecName: Full=ATP-dependent RNA helicase srmB gi|42996|emb|CAA32364.1| SrmB protein [Escherichia coli] gi|285777|dbj|BAA02447.1| putative ATP dependent RNA helicase [Escherichia coli] gi|987650|dbj|BAA10922.1| putative ATP dependent RNA helicase [Escherichia coli K-12] gi|1788930|gb|AAC75629.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|85675467|dbj|BAE76752.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr. W3110] gi|169890020|gb|ACB03727.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|238860047|gb|ACR62045.1| ATP-dependent RNA helicase [Escherichia coli BW2952] gi|260448344|gb|ACX38766.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1] gi|315137200|dbj|BAJ44359.1| ATP-dependent RNA helicase SrmB [Escherichia coli DH1] Length = 444 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 137/356 (38%), Positives = 206/356 (57%), Gaps = 4/356 (1%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMP 73 A+ D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + P Sbjct: 18 ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPP 77 Query: 74 RTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 R LIL PTRELA QV+D+ + K+ +L +A + GG+ + + D+++ T GR+ Sbjct: 78 RILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137 Query: 134 LDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQ 192 L + +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197 Query: 193 KVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFC 252 +E L++P + N PS+ H + K ALL LL+ + ++ I+F Sbjct: 198 DFAERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFV 255 Query: 253 NQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIP 312 +++ V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIP Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315 Query: 313 DVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 DV HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291] Length = 751 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 145/403 (35%), Positives = 225/403 (55%), Gaps = 20/403 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L LS V+ + GYVKP+PIQ TIP+ L D+ A TG+GKTA+F++P++ Sbjct: 231 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 290 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L A++ R ++L PTRELA QVAD ++ + + +T L +GG+ Q + L+ Sbjct: 291 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 350 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D++I TPGR +DH N ++++EILV+DEADRML+ GF + I L+P RQ Sbjct: 351 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 410 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM +++ + L+ P RI ++ P A + FV + K ALL L+ Sbjct: 411 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 470 Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D K ++F +K+ L + G SV +HG++ Q R+ ++ FK + Sbjct: 471 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 530 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353 +++ +DLA+RGLDIP + V N+D+P E Y+HR+GRT RAGR G++ T V + Sbjct: 531 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 590 Query: 354 -----IKHIDAIEKLIEKK-----VDWLNGDLSSLNPPLEKID 386 IK ++ + L + K VDW+ + N +E +D Sbjct: 591 IVRAAIKSVEENKSLTQGKALGRNVDWVQ--IEETNKLVESMD 631 >gi|218690692|ref|YP_002398904.1| ATP-dependent RNA helicase SrmB [Escherichia coli ED1a] gi|218428256|emb|CAR09175.2| ATP-dependent RNA helicase [Escherichia coli ED1a] Length = 444 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 137/353 (38%), Positives = 204/353 (57%), Gaps = 4/353 (1%) Query: 18 DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT-ILEKGRARVRMPRTL 76 D G+ +PT IQ IP L DV G A TGTGKTA+++LP L +L+ R + PR L Sbjct: 21 DKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRIL 80 Query: 77 ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDH 136 IL PTRELA QVAD+ + K+ +L +A + GG+ + + D+++ T GR+L + Sbjct: 81 ILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQY 140 Query: 137 FNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVS 195 +E L++DEADRMLDMGF I++I + +QTLLFSAT+ D +Q + Sbjct: 141 IKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFA 200 Query: 196 ENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQK 255 E L++P + N PS+ H + K ALL LL+ + ++ I+F ++ Sbjct: 201 ERLLEDPVEVSAN-PSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRS-IVFVRKR 258 Query: 256 KNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315 + V L + L + G + C + G + Q R + + EG + ++VA+D+AARG+DIPDV Sbjct: 259 ERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVS 318 Query: 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKV 368 HVFNFD+P + Y+HRIGRT RAGR G A +LV D + + + IE+ + Sbjct: 319 HVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 371 >gi|145300612|ref|YP_001143453.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp. salmonicida A449] gi|142853384|gb|ABO91705.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp. salmonicida A449] Length = 459 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 154/460 (33%), Positives = 246/460 (53%), Gaps = 25/460 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F+ L LSP + + GY++ TPIQ +++PLVL D+ A+TG+GKTA+F L +L Sbjct: 5 EFSSLNLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFALGLLA 64 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLE 120 L R V+ L+L PTRELA QVA + + N+ + L GG Q+ L Sbjct: 65 KLNVNRLEVQ---ALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTQTAPQSATLG 121 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA + + TPGRIL H +G L ++ ++ LV+DEADRMLDMGF I + S P RQT Sbjct: 122 FGAHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEEINRVISYAPEQRQT 181 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT + + ++S +NP + V + + + + Q + L LL Sbjct: 182 LLFSATYPEGIAQMSRGVQRNPVEVSVESLHEGSAIEQKLYEVPAGQ---RLDALTWLL- 237 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 S + ++FCN K+ ++ L +GFS A++G+++QR R ++L F G+ ++V Sbjct: 238 SHYQPASCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILV 297 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARGLDI ++G V N+++ E ++HRIGRTGRAG+ G A +L + + ++ I Sbjct: 298 ATDVAARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNLI 357 Query: 361 EKLIEKKVDWLNGDLSSLNPPLE---------KIDIAQHNHARKNNPIPQKS-----TGF 406 E+ ++ GDL+ + ++ ID + R + + + G Sbjct: 358 EEY--QQAPMPQGDLAEIGREIKPIAPQMVTLSIDAGRKTKVRAGDILGALTGEGGIAGA 415 Query: 407 DRRKKNYSSQKSHIPLKESEKISKLQQDIQENDADSLGFR 446 D K S Q S++ +K S + L++ +QE +R Sbjct: 416 DVGKIQISEQYSYVAVKRSVGSAALKR-LQEGKIKGRTYR 454 >gi|328876634|gb|EGG24997.1| putative RNA helicase [Dictyostelium fasciculatum] Length = 806 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 142/395 (35%), Positives = 220/395 (55%), Gaps = 24/395 (6%) Query: 15 AVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT------ILEKGRA 68 AVL G+ PT IQ ++ P+ L+ D+ G+A+TG+GKT +F+LP + LE G Sbjct: 418 AVL--GFTAPTSIQCQSWPIALKGRDMIGLAETGSGKTLAFLLPAIVHINAQPYLETGDG 475 Query: 69 RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLIC 128 P L+L PTRELA Q+ + +K+G + + + GG+P Q + L G ++++ Sbjct: 476 ----PIVLVLTPTRELAMQIQNECDKFGSSSKIKNCCIYGGVPKYQQAQALRSGVEIVVA 531 Query: 129 TPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMT 188 TPGR++D RG + + LV+DEADRMLDMGF I+ I + +QTL+FSAT Sbjct: 532 TPGRLIDFLERGGTNLRRVTYLVLDEADRMLDMGFEDQIRKILGQIRPDKQTLMFSATWP 591 Query: 189 DELQKVSENFLQNPKRIEVNTPSSTA-----ETIEHCFVATYAQYSKKCALLQQLLQSQD 243 +Q ++ +FL +P ++++ + +A + IE C + K+ L Q L+S + Sbjct: 592 KSVQSLAADFLVDPIQVKIGSAELSANHKVTQHIEIC-----EKMDKQTKLF-QYLKSIE 645 Query: 244 TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD 303 IIF K V L ++ GF AIHG+ Q R LS FK+G IQ ++A+D Sbjct: 646 PGAKCIIFLETKSGVGMLARNMSYAGFKCEAIHGDKTQGERDFALSQFKDGKIQCLIATD 705 Query: 304 LAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363 +A+RGLD+ D+ +V N+D PN E+YIHRIGRTGRAG G A+TL +D++ + + Sbjct: 706 VASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAYTLFTLDDMRLASDLVTV 765 Query: 364 IEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNP 398 + + ++ L + P K I + + NP Sbjct: 766 LAEASQYVPPQLEQMVPNKFK-SITDYKSQNRYNP 799 >gi|303288181|ref|XP_003063379.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455211|gb|EEH52515.1| predicted protein [Micromonas pusilla CCMP1545] Length = 513 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 207/362 (57%), Gaps = 14/362 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F D+ V + + PTP+Q IP+ L R D+ AQTG+GKTA+F P++ Sbjct: 55 FQDVDFGAAVNKNIARCKFKNPTPVQKYAIPISLARRDLMACAQTGSGKTAAFCFPIIYG 114 Query: 62 ILEKGRA------RVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQ 115 +L++G A R P L++ PTRELA Q+ + K+ + ++ GG P Q Sbjct: 115 LLDRGLAGSQRGGRKTFPLALVIAPTRELAIQIHEESRKFAYQTGVASCVIYGGAPAAQQ 174 Query: 116 NKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSL-- 173 +++ERG D+L+ TPGR++D +R K+ ++ + L +DEADRMLDMGF P I+ I Sbjct: 175 FREMERGCDILVATPGRLIDLVDRAKISLSEVRYLALDEADRMLDMGFEPQIRQIVEQRD 234 Query: 174 VPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 +P T RQT+LFSAT E+Q+++ +FL++ + V S+ I + Y K Sbjct: 235 MPPTGERQTMLFSATFPREIQRMASDFLKDYIFLTVGRVGSSHTLITQQ-IEYLRSYEDK 293 Query: 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF 291 ++L L+ + + ++F K+ L L ++GF +IHG+ Q+ R L +F Sbjct: 294 KSMLMDLVHAVKGLT--LVFVETKRGADQLEDWLSREGFPSTSIHGDRTQQEREYALKSF 351 Query: 292 KEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 + G ++VA+D+AARGLDIP V HV NFD+P+ ++Y+HRIGRTGRAG+ G A Sbjct: 352 RSGRTPILVATDVAARGLDIPHVTHVINFDLPSDIDDYVHRIGRTGRAGKKGLATAFFTD 411 Query: 352 ED 353 +D Sbjct: 412 KD 413 >gi|304398629|ref|ZP_07380501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] gi|304353840|gb|EFM18215.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] Length = 442 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 208/368 (56%), Gaps = 4/368 (1%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F++L L ++ A+ + G+ +PT IQ IP L+ DV G A TGTGKTA+++LP L Sbjct: 6 FSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQH 65 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 +L+ R + PR LI+ PTRELA QVAD+ + K+ +L +A + GG+ + + Sbjct: 66 LLDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 D+++ T GR+L + +E LV+DEADRMLDMGF I+ I + + +QT+ Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRWRKQTM 185 Query: 182 LFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LFSAT+ D ++ +E L +P +E + + I+ + K LL LL+ Sbjct: 186 LFSATLEGDNIRDFAERLLNDPVELEADPSRRERKKIQQWYYRA-DDLQHKTKLLIHLLK 244 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 D + I+F +++ + L L + G + G + Q R + + EG + ++V Sbjct: 245 QPDVTR-CIVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVLV 303 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 A+D+AARG+D+ DV HVFN+D+P A+ Y+HRIGRTGRAGR G A +LV D + I Sbjct: 304 ATDIAARGIDVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDFVLLGKI 363 Query: 361 EKLIEKKV 368 + + + + Sbjct: 364 TRYVNEPI 371 >gi|238493219|ref|XP_002377846.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357] gi|317157028|ref|XP_001826178.2| ATP-dependent RNA helicase dbp2 [Aspergillus oryzae RIB40] gi|220696340|gb|EED52682.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357] Length = 556 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 12/373 (3%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT- 61 F + G V+ V G+ +PT IQ + P+ L DV GIA+TG+GKT S+ LP + Sbjct: 134 FDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVH 193 Query: 62 -----ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 +L G P L+L PTRELA Q+ K+GK+ + + GG+P Q Sbjct: 194 INAQPLLAPGDG----PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 249 Query: 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF 176 + L RG +V I TPGR++D G+ + + LV+DEADRMLDMGF P I+ I S + Sbjct: 250 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 309 Query: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 RQT ++SAT E+++++ +FL + ++ + + +A V + + K+ +++ Sbjct: 310 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 369 Query: 237 QLLQSQDTMKNG-IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 L + + N +IF K+ + L + G+ +IHG+ Q+ R +L+ FK G Sbjct: 370 HLEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 429 Query: 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 +MVA+D+A+RG+D+ D+ HV N+D PN +E+Y+HRIGRTGRAG G A T ++ K Sbjct: 430 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 489 Query: 356 HI-DAIEKLIEKK 367 D + L E K Sbjct: 490 QARDLVTILTEAK 502 >gi|323977024|gb|EGB72111.1| DEAD/DEAH box helicase [Escherichia coli TW10509] Length = 457 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 8/377 (2%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 L P + + + GY+ TP+Q +P +L DV A+TG+GKTA+F L +L+K Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAF---GLGLLQKID 66 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126 A + + L+L PTRELA QVA + + N + L GG PF Q L+ ++ Sbjct: 67 ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 + TPGR+LDH +G + ++ + +LV+DEADRMLDMGF I ++ P +RQTLLFSAT Sbjct: 127 VATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246 + + +S ++P IE+++ + IE F T ++ K LLQ+LL S Sbjct: 187 WPEAITAISGRVQRDPLAIEIDS-TDALPPIEQQFYETSSK--GKIPLLQRLL-SLHQPS 242 Query: 247 NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAA 306 + ++FCN KK+ +C +L G S ++HG+++QR R + L F G+ +++VA+D+AA Sbjct: 243 SCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAA 302 Query: 307 RGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEK 366 RGLDI + V NF++ E ++HRIGRT RAG G A + A E+ + + I +++ Sbjct: 303 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQI 362 Query: 367 KVDWLNGDLSSLNPPLE 383 K++W ++S PLE Sbjct: 363 KLNWQTPPVNSSIVPLE 379 >gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118] Length = 754 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 142/388 (36%), Positives = 219/388 (56%), Gaps = 18/388 (4%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 +F L LS V+ + GYVKP+PIQ TIP+ L D+ A TG+GKTA+F++P++ Sbjct: 234 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN-LTVALLIGGIPFEAQNKKLE 120 L A++ R ++L PTRELA QVAD ++ + + +T L +GG+ Q + L+ Sbjct: 294 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 353 Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179 D++I TPGR +DH N ++++EILV+DEADRML+ GF + I L+P RQ Sbjct: 354 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 413 Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 LLFSATM +++ + L+ P RI ++ P A + FV + K ALL L+ Sbjct: 414 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 473 Query: 240 QSQD--TMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 + D K ++F +K+ L + G SV +HG++ Q R+ ++ FK + Sbjct: 474 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 533 Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED---- 353 +++ +DLA+RGLDIP + V N+D+P E Y+HR+GRT RAGR G++ T V + Sbjct: 534 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593 Query: 354 -----IKHIDAIEKLIEKK-----VDWL 371 IK ++ + L + K VDW+ Sbjct: 594 IVRAAIKSVEENKSLTQGKALGRNVDWV 621 >gi|290968690|ref|ZP_06560228.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L] gi|290781343|gb|EFD93933.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L] Length = 420 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 208/370 (56%), Gaps = 13/370 (3%) Query: 3 FADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 F LG+SP ++C +L G PT +Q K +P + Q D+ G AQTGTGKT +F+LP L Sbjct: 5 FQTLGVSP-ILCELLKKQGIAVPTQVQEKALPALFQGRDILGQAQTGTGKTLAFLLPALQ 63 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 + + + LIL PTRELA Q+ ++ + +IGG E Q +KL+R Sbjct: 64 QIHPDQ---HQEQVLILAPTRELAKQITAVATDLAAALHIDILNIIGGQTIENQLQKLQR 120 Query: 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTL 181 ++I TPGR+LDH R L + + +++DEAD++L GF+ + + + P RQ L Sbjct: 121 HPQMIIGTPGRLLDHCRRHSLNLTGVGRIIVDEADQLLQTGFLEDVDTLLGMTPKRRQLL 180 Query: 182 LFSATMTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEH--CFVATYAQYSKKCALLQQL 238 FSAT+ D+++ +++ + NP V SS A ETIE + ++S C LL ++ Sbjct: 181 FFSATVPDKIKSLAKKHMHNPFVFHVLEGSSIALETIEQRIYMIKEEQKFSFLCKLLHEM 240 Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298 +IFCN K+ L L + GF+V +HG++ Q R ++L +F + QL Sbjct: 241 -----NPYLSVIFCNTKERTSILAGQLIRAGFAVSELHGDLSQGRRTQVLRDFSKAKTQL 295 Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358 +VA+D+AARGLDI + HVFN+DVP+ + YIHRIGRTGRAG G A TL D + Sbjct: 296 LVATDIAARGLDIAGITHVFNYDVPHDIDYYIHRIGRTGRAGNEGLAVTLATAADEDWVR 355 Query: 359 AIEKLIEKKV 368 IE I + Sbjct: 356 RIEHAIRATI 365 >gi|163915660|gb|AAI57684.1| LOC100135374 protein [Xenopus (Silurana) tropicalis] Length = 898 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 207/353 (58%), Gaps = 3/353 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ P+L Sbjct: 208 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPILVH 267 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + +K P +I+ PTREL Q+ +++GK YNL + GG Q K L+ Sbjct: 268 IMDQKELQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 327 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA++++CTPGR++DH + + + LV DEADRM DMGF +++I + V RQT Sbjct: 328 EGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQT 387 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +++K++ + L +P R+ E I + K L ++L++ Sbjct: 388 LLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVE 447 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 T + +IF +K N L ++L + + +HG++DQ R K++S+FK+ +I ++V Sbjct: 448 FTST-GSVLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLV 506 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A TL+ +D Sbjct: 507 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKD 559 >gi|301612200|ref|XP_002935570.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Xenopus (Silurana) tropicalis] Length = 943 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 207/353 (58%), Gaps = 3/353 (0%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62 FA G +++ + + Y +PTPIQ + +P+ L D+ GIA+TG+GKTA+F+ P+L Sbjct: 253 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPILVH 312 Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 + +K P +I+ PTREL Q+ +++GK YNL + GG Q K L+ Sbjct: 313 IMDQKELQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 372 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 GA++++CTPGR++DH + + + LV DEADRM DMGF +++I + V RQT Sbjct: 373 EGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQT 432 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSAT +++K++ + L +P R+ E I + K L ++L++ Sbjct: 433 LLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVE 492 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 T + +IF +K N L ++L + + +HG++DQ R K++S+FK+ +I ++V Sbjct: 493 FTST-GSVLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLV 551 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKED 353 A+D+AARGLDIP + V N+DV + + HRIGRTGRAG G A TL+ +D Sbjct: 552 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKD 604 >gi|47217410|emb|CAG00770.1| unnamed protein product [Tetraodon nigroviridis] Length = 456 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 153/421 (36%), Positives = 232/421 (55%), Gaps = 25/421 (5%) Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61 DF+ LGLS +V G KPTP+Q +P +LQ D G A+TG+GKTA+FVLP+L Sbjct: 3 DFSSLGLSDWLVKQCKQLGIHKPTPVQENCVPAILQGRDCMGCAKTGSGKTAAFVLPVLQ 62 Query: 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 L + + L+L PTRELA Q+A+ F GK L +++GG+ +Q +L Sbjct: 63 KLSEDPYGIF---CLVLTPTRELAYQIAEQFRVLGKPLGLRDCIVVGGMDMVSQASELSN 119 Query: 122 GADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFT 177 V++ TPGR+ DH M+ I+ L++DEADR+L+ G F ++ I +P Sbjct: 120 QPHVVVATPGRLADHIRSSSTFSMSKIQFLIMDEADRLLEQGCTDFTKDLETIMPALPAK 179 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 RQTLLFSAT+TD LQ++ + P E + + T + ++ ++ T + K A L Sbjct: 180 RQTLLFSATLTDTLQELKNIAMNKPFFWESKSETRTVDELDQRYILTPEKV--KDAYLVH 237 Query: 238 LLQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG 294 L+Q+ Q + IIF N KN L L++ F ++H + Q+ R L+ FK Sbjct: 238 LIQTFTDQHDDWSIIIFTNTCKNCQILTMMLQQFNFPTISLHSMMKQKQRFANLAKFKAS 297 Query: 295 TIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 ++++A+D+AARGLDIP V V N + P + YIHR+GRT RAGR+G + TLV + DI Sbjct: 298 VYKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDI 357 Query: 355 KHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDI----AQHNHARKNNPIPQKSTGFDRRK 410 + +IE+ I+ K+ P+E+ ++ Q N R+ I +ST FD +K Sbjct: 358 HLVHSIEEQIQTKLKEF---------PVEEKEVLKILTQVNVTRRECEIRLESTDFDEKK 408 Query: 411 K 411 + Sbjct: 409 E 409 >gi|319897620|ref|YP_004135817.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031] gi|317433126|emb|CBY81500.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031] Length = 415 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 214/368 (58%), Gaps = 10/368 (2%) Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPM--- 59 F+DL L P V A+ G+ TPIQ ++P+ L DV G AQTGTGKT +F+ Sbjct: 11 FSDLPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70 Query: 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL 119 L + PR LIL PTRELA Q++++ E K L AL GG ++ Q + + Sbjct: 71 LLTYQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130 Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPF--T 177 ERG D+LI T GR++D+ +G + ++ I+++V+DEADRM D+GFI I+ + P Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190 Query: 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETI-EHCFVATYAQYSKKCALLQ 236 R T+LFSAT++ ++++++ + +P+ IE+ T I E F Y K ALL Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELF---YPSNQDKMALLL 247 Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 L++ + + I+F N K + L G V + G++ Q+ R+ +L F +G + Sbjct: 248 TLMEDE-WPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 306 Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 ++VA+D+AARGL I DV HVFN+D+P+ E+Y+HRIGRTGRAG G + + +E + Sbjct: 307 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMN 366 Query: 357 IDAIEKLI 364 + AIE+ I Sbjct: 367 LPAIEEYI 374 >gi|170681328|ref|YP_001743833.1| ATP-dependent RNA helicase DbpA [Escherichia coli SMS-3-5] gi|170519046|gb|ACB17224.1| ATP-independent RNA helicase DbpA [Escherichia coli SMS-3-5] Length = 457 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 219/377 (58%), Gaps = 8/377 (2%) Query: 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 L P + + + GY+ TP+Q +P +L DV A+TG+GKTA+F L +L ++ Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID--- 66 Query: 68 ARVRMPRTLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVL 126 A + + L+L PTRELA QVA + + N + L GG PF Q L+ ++ Sbjct: 67 ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHII 126 Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186 + TPGR+LDH +G + ++ + LV+DEADRMLDMGF I ++ P +RQTLLFSAT Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186 Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMK 246 + + +S ++P IE+++ + IE F T+++ K LLQ+LL S Sbjct: 187 WPEAIAAISGRVQRDPLAIEIDS-TDALPPIEQQFYETF