RPSBLAST alignment for GI: 254780382 and conserved domain: COG0513
>gnl|CDD|30859 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]. Length = 513
Score = 395 bits (1015), Expect = e-110
Identities = 183/464 (39%), Positives = 265/464 (57%), Gaps = 12/464 (2%)
Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
+FA LGLSP+++ A+ D G+ +PTPIQ+ IPL+L DV G AQTGTGKTA+F+LP+L
Sbjct: 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLL 88
Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
+ K + LIL PTRELA Q+A+ K GKN L VA++ GG+ Q + L
Sbjct: 89 QKILK-SVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL 147
Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
+RG D+++ TPGR+LD RGKL ++ +E LV+DEADRMLDMGFI I+ I +P RQ
Sbjct: 148 KRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQ 207
Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQQ 237
TLLFSATM D++++++ +L +P IEV+ T + I+ ++ ++ K LL +
Sbjct: 208 TLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKL-ELLLK 266
Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
LL+ +D I+F K+ V L SL K+GF V A+HG++ Q R + L FK+G ++
Sbjct: 267 LLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR 325
Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
++VA+D+AARGLDIPDV HV N+D+P E+Y+HRIGRTGRAGR G A + V +E++K
Sbjct: 326 VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKK 385
Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
+ IEK +E+K+ + L P E D R + ++ K+
Sbjct: 386 LKRIEKRLERKLPS-----AVLLPLDEPEDAKLLKTTRPGLEEESDISDEIKKLKSSKKA 440
Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
L +E + N
Sbjct: 441 LLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDPELERRSPNSAD 484