RPSBLAST alignment for GI: 254780382 and conserved domain: COG0513

>gnl|CDD|30859 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]. Length = 513
 Score =  395 bits (1015), Expect = e-110
 Identities = 183/464 (39%), Positives = 265/464 (57%), Gaps = 12/464 (2%)

Query: 1   MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
            +FA LGLSP+++ A+ D G+ +PTPIQ+  IPL+L   DV G AQTGTGKTA+F+LP+L
Sbjct: 29  PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLL 88

Query: 61  TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN-YNLTVALLIGGIPFEAQNKKL 119
             + K     +    LIL PTRELA Q+A+   K GKN   L VA++ GG+    Q + L
Sbjct: 89  QKILK-SVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL 147

Query: 120 ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +RG D+++ TPGR+LD   RGKL ++ +E LV+DEADRMLDMGFI  I+ I   +P  RQ
Sbjct: 148 KRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQ 207

Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTP--SSTAETIEHCFVATYAQYSKKCALLQQ 237
           TLLFSATM D++++++  +L +P  IEV+      T + I+  ++   ++  K   LL +
Sbjct: 208 TLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKL-ELLLK 266

Query: 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297
           LL+ +D     I+F   K+ V  L  SL K+GF V A+HG++ Q  R + L  FK+G ++
Sbjct: 267 LLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR 325

Query: 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVA-KEDIKH 356
           ++VA+D+AARGLDIPDV HV N+D+P   E+Y+HRIGRTGRAGR G A + V  +E++K 
Sbjct: 326 VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKK 385

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQ 416
           +  IEK +E+K+       + L P  E  D       R         +   ++ K+    
Sbjct: 386 LKRIEKRLERKLPS-----AVLLPLDEPEDAKLLKTTRPGLEEESDISDEIKKLKSSKKA 440

Query: 417 KSHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
                         L    +E          +        N   
Sbjct: 441 LLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDPELERRSPNSAD 484