RPSBLAST alignment for GI: 254780382 and conserved domain: KOG0333
>gnl|CDD|35554 KOG0333, KOG0333, KOG0333, U5 snRNP-like RNA helicase subunit [RNA processing and modification]. Length = 673
Score = 288 bits (739), Expect = 2e-78
Identities = 133/380 (35%), Positives = 206/380 (54%), Gaps = 34/380 (8%)
Query: 5 DLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE 64
+ G +++ + GY +PTPIQ + IPL LQ D G+A+TG+GKTA+F++P+L +
Sbjct: 249 ESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308
Query: 65 KGRARVRM------PRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
R+ P +IL PTRELA Q+ + K+GK + +IGG+ FE Q +
Sbjct: 309 SLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQ 368
Query: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT- 177
L G +++I TPGR++D L++N +V+DEADRM+DMGF P +Q I +P +
Sbjct: 369 LSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSN 428
Query: 178 ------------------------RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSST 213
RQT++F+ATM +++++ ++L+ P + + +
Sbjct: 429 AKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKP 488
Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC 273
+E +K L ++L+S IIF N KK L LEK G+ V
Sbjct: 489 TPRVEQ--KVEMVSEDEKRKKLIEILESNFD-PPIIIFVNTKKGADALAKILEKAGYKVT 545
Query: 274 AIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRI 333
+HG Q R L++F+EGT ++VA+D+A RG+DIP+V V N+D+ E+Y HRI
Sbjct: 546 TLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRI 605
Query: 334 GRTGRAGRHGKAFTLVAKED 353
GRTGRAG+ G A + + D
Sbjct: 606 GRTGRAGKSGTAISFLTPAD 625