RPSBLAST alignment for GI: 254780382 and conserved domain: KOG0334

>gnl|CDD|35555 KOG0334, KOG0334, KOG0334, RNA helicase [RNA processing and modification]. Length = 997
 Score =  248 bits (635), Expect = 2e-66
 Identities = 146/463 (31%), Positives = 235/463 (50%), Gaps = 16/463 (3%)

Query: 4   ADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTIL 63
              GLS K++  +   GY KPTPIQ + IP ++   DV G+A+TG+GKT +F+LPM+  +
Sbjct: 368 TQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHI 427

Query: 64  EKGR--ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121
           +  R       P  LIL PTRELA Q+     K+ K   + V  + GG     Q  +L+R
Sbjct: 428 KDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKR 487

Query: 122 GADVLICTPGRILDHF--NRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
           GA++++CTPGR++D    N G++  +  +  LV+DEADRM DMGF P I  I   +   R
Sbjct: 488 GAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDR 547

Query: 179 QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238
           QT+LFSAT    ++ ++   L+ P  I V   S   + +         +  K   LL+ L
Sbjct: 548 QTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELL 607

Query: 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQL 298
            +  +  K  IIF ++++    L   L+K G++  ++HG +DQ  R   + +FK G + L
Sbjct: 608 GERYEDGKT-IIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNL 666

Query: 299 MVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHID 358
           +VA+ + ARGLD+ ++  V N+D PN  E+Y+HR+GRTGRAGR G A T +  + +K+  
Sbjct: 667 LVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAG 726

Query: 359 AIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQH-NHARKNNPIPQKSTGFDRRKKNYSSQK 417
            + K +E              P L +    +     +          GF  +   +   +
Sbjct: 727 DLCKALELS--------KQPVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGLKFDEVE 778

Query: 418 SHIPLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGK 460
             +  +E ++  +    ++E D +S     N      P+   +
Sbjct: 779 EEL-RQERKEAQRKDLGLKEGDNESDIEVDNSDKASQPRESIQ 820