RPSBLAST alignment for GI: 254780382 and conserved domain: KOG0336
>gnl|CDD|35557 KOG0336, KOG0336, KOG0336, ATP-dependent RNA helicase [RNA processing and modification]. Length = 629
Score = 265 bits (678), Expect = 2e-71
Identities = 132/361 (36%), Positives = 218/361 (60%), Gaps = 7/361 (1%)
Query: 10 PKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILE---KG 66
P+V+ + G+ KPTPIQ + P++LQ D+ G+AQTGTGKT +F+LP ++ K
Sbjct: 229 PEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR 288
Query: 67 RARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVL 126
R + P L+L PTRELA Q+ +KY N +V + GG E Q + L+RG +++
Sbjct: 289 REQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE-QIEDLKRGVEII 347
Query: 127 ICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSAT 186
I TPGR+ D + + +I LV+DEADRMLDMGF P I+ I + RQT++ SAT
Sbjct: 348 IATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSAT 407
Query: 187 MTDELQKVSENFLQNPKRIEVNTPSSTA-ETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
+ ++++++++L+ P + V + A ++++ + T S+K ++Q + + +
Sbjct: 408 WPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTD--SEKLEIVQFFVANMSSN 465
Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
IIF ++K +L +G S ++HGN +Q R L +FK G ++++VA+DLA
Sbjct: 466 DKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLA 525
Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIE 365
+RGLD+PD+ HV+N+D P E Y+HR+GRTGRAGR G + + + + D + + +++E
Sbjct: 526 SRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILE 585
Query: 366 K 366
+
Sbjct: 586 R 586