RPSBLAST alignment for GI: 254780382 and conserved domain: KOG0339
>gnl|CDD|35560 KOG0339, KOG0339, KOG0339, ATP-dependent RNA helicase [RNA processing and modification]. Length = 731
Score = 261 bits (669), Expect = 2e-70
Identities = 134/355 (37%), Positives = 209/355 (58%), Gaps = 3/355 (0%)
Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
F G +++ A+ + Y KPTPIQ + +P L DV GIA+TG+GKTA+F+ PM+
Sbjct: 225 FEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVH 284
Query: 63 L--EKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
+ + P +IL PTRELA+Q+ +K+GK Y L V + GG Q+K+L+
Sbjct: 285 IMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK 344
Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
GA++++ TPGR++D ++ + LV+DEADRM DMGF P +++I + RQT
Sbjct: 345 EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQT 404
Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
LLFSAT +++K++ + L +P R+ E I ++ K LL+ L++
Sbjct: 405 LLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVE 464
Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
K +IF +K + + +L+ +GF+V +HG+ DQ R ++LS FK+ ++V
Sbjct: 465 FSSEGKV-LIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLV 523
Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355
A+D+AARGLDIP + V N+D + + HRIGRTGRAG G A+TLV ++D +
Sbjct: 524 ATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578