BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] (465 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 465 Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/465 (100%), Positives = 465/465 (100%) Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML Sbjct: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60 Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE Sbjct: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT Sbjct: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ Sbjct: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV Sbjct: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI Sbjct: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI Sbjct: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420 Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL Sbjct: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 192 bits (488), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 111/344 (32%), Positives = 188/344 (54%), Gaps = 7/344 (2%) Query: 10 PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 P+V+ L + GYV T +Q + L+ DV AQTG+GKT +F L + + L Sbjct: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 Query: 69 R---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 R P L + PTRELA QV E + VA+ IGG+ + + L+ GA + Sbjct: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 ++ TPGR+ DH L +++++ +V+DEAD MLD+GF I+ I P R+ L+FSA Sbjct: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245 T++ + +++N+ ++ R+ + + + I+ + A S + + +L+ Sbjct: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYHGA- 244 Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 KN I+FC+ + +V L + F V A+ G + Q+ R L ++G ++ +A+D+A Sbjct: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 ARG+D+PD+ V + ++ + EN +HR GRTGRAGR G + ++ Sbjct: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/308 (22%), Positives = 137/308 (44%), Gaps = 38/308 (12%) Query: 47 TGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106 G+GKT ++ M +E G + +I+ P LA Q + +KY +N + V ++ Sbjct: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355 Query: 107 IGGIPFEAQNKKLER----GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR----- 157 G +P + K LER A ++I T D KL++ +++DE R Sbjct: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQ 410 Query: 158 ---MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSST 213 + P++ +T+ P R TL+ ++ ++ K++E + P + + + Sbjct: 411 RLKLTQKATAPHVLLMTA-TPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468 Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSV 272 E IE V ++ K + Q+ + +++ ++VV +SL E S+ Sbjct: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKES---------NFRSVVERFNSLHEHFTSSI 518 Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332 IHG + + ++ +FK GT +L++A+ + G+D+ D + + + +H+ Sbjct: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578 Query: 333 I-GRTGRA 339 + GR GR Sbjct: 579 LRGRVGRG 586 >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 K+ +L L ++ V +H + R++I+ + + G ++V +L GLDIP+ Sbjct: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651 Query: 315 GHVFNFDVPNRA--ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369 G V D + I GRA R+ V + I + D I K I+ +D Sbjct: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN------VNSKVILYADTITKSIQLAID 702 >gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter asiaticus str. psy62] Length = 220 Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 26 PIQIKTIPLVLQRHDVCGI-AQTGTGKTASFVLPMLTILEKGRARVRMPR-TLILEPTRE 83 P QI + +L HD C + A G+GKT S + + TI ++ PR LI+ P R Sbjct: 7 PHQIVMVNWLLS-HDRCALWASMGSGKTVSVLFALSTI------KILDPRPVLIIAPLRV 59 Query: 84 LAAQVADNFEKYGKNYNLTVALLIG 108 D E++ ++TV+ LIG Sbjct: 60 AQYVWKDEVERWSAFSDMTVSSLIG 84 >gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62] Length = 296 Score = 29.6 bits (65), Expect = 0.11, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 19/43 (44%) Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 S +TD L + N L+ + + S TIEH A YA Sbjct: 50 SGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYA 92 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 27.7 bits (60), Expect = 0.43, Method: Compositional matrix adjust. Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF--NFDVPNRAENY 329 + HG + ++ ++ F EG +++++ + GLD+P + D+ A+ Y Sbjct: 863 IAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLY 922 Query: 330 IHRIGRTGRA 339 R GR GR+ Sbjct: 923 QLR-GRVGRS 931 >gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 378 Score = 27.3 bits (59), Expect = 0.57, Method: Compositional matrix adjust. Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%) Query: 338 RAGRHGKAFTLVAK---EDIKHIDAIEKL 363 RAGRHG AFT K + +HID + L Sbjct: 273 RAGRHGLAFTRFGKINLRNARHIDDMRPL 301 >gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 292 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 445 FRGNMPAFMLPKNRGKLNDK 464 FRG++PA + P +G L D+ Sbjct: 2 FRGSIPALITPFTKGNLIDE 21 >gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 12/69 (17%) Query: 190 ELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248 E+Q++SE F+ N + + P TI H Q + QQ++Q+ T+KN Sbjct: 27 EMQRLSEIFIVHNTVYLSITVP----HTIAH-------QLQSLRSNAQQIIQNIPTVKNA 75 Query: 249 IIFCNQKKN 257 ++ + KN Sbjct: 76 VVTLTENKN 84 >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust. Identities = 9/16 (56%), Positives = 10/16 (62%) Query: 316 HVFNFDVPNRAENYIH 331 + NFDVP R N IH Sbjct: 120 NAINFDVPERVRNKIH 135 >gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 24.3 bits (51), Expect = 4.9, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 23/49 (46%) Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 G+ K + V +ED + I I + N DLS LNP ++I I Sbjct: 179 GQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMIC 227 >gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83 PTP + P ++ CGI GT T +++GR + +I ++ Sbjct: 198 PTPQRSLDAPFLMHIEGSCGIEGRGTVVTGC--------IKRGRIKAGSDVEIIGMGGKK 249 Query: 84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LERGADVLICTPGRILDH 136 L + D E + K + +A G+ N+ + RG ++C PG I ++ Sbjct: 250 LKVKCTD-VEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGR--VVCAPGSIQEY 300 >gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83 PTP + P ++ CGI GT T +++GR + +I ++ Sbjct: 198 PTPQRSLDAPFLMHIEGSCGIEGRGTVVTGC--------IKRGRIKAGSDVEIIGMGGKK 249 Query: 84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LERGADVLICTPGRILDH 136 L + D E + K + +A G+ N+ + RG ++C PG I ++ Sbjct: 250 LKVKCTD-VEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGR--VVCAPGSIQEY 300 >gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 385 Score = 23.5 bits (49), Expect = 6.9, Method: Compositional matrix adjust. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315 R+ I+S+ + ++L ++SD +D PD+G Sbjct: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305 >gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 Score = 23.5 bits (49), Expect = 8.8, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 12/69 (17%) Query: 190 ELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248 E+Q++SE F+ N + + P TI H Q + A QQ++Q+ T+KN Sbjct: 27 EMQRLSEIFIVHNTVYLSITVP----HTIAHQL-----QSLRSNA--QQIIQNIPTVKNA 75 Query: 249 IIFCNQKKN 257 ++ + KN Sbjct: 76 VVTLTENKN 84 >gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 Score = 23.5 bits (49), Expect = 8.8, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 12/69 (17%) Query: 190 ELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248 E+Q++SE F+ N + + P TI H Q + A QQ++Q+ T+KN Sbjct: 27 EMQRLSEIFIVHNTVYLSITVP----HTIAHQL-----QSLRSNA--QQIIQNIPTVKNA 75 Query: 249 IIFCNQKKN 257 ++ + KN Sbjct: 76 VVTLTENKN 84 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.394 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 304,189 Number of Sequences: 1233 Number of extensions: 13098 Number of successful extensions: 57 Number of sequences better than 100.0: 22 Number of HSP's better than 100.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 23 length of query: 465 length of database: 328,796 effective HSP length: 77 effective length of query: 388 effective length of database: 233,855 effective search space: 90735740 effective search space used: 90735740 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)