HHsearch alignment for GI: 254780383 and conserved domain: PRK00116

>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed.
Probab=91.79  E-value=0.33  Score=28.76  Aligned_cols=72  Identities=24%  Similarity=0.248  Sum_probs=44.7

Q ss_pred             CCCCHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             762000101268999999997-300379999997523--554442001000014567776432358888999987542
Q gi|254780383|r   77 ADTPQKMLAIGEKKLQNYIRT-IGIYRKKSENIISLS--HILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGI  151 (227)
Q Consensus        77 ypt~e~l~~a~~~el~~~ir~-~G~~~~KAk~I~~~a--~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~  151 (227)
T Consensus        57 ~~~LyGF~~~~Er~~F~~Li~V~GIGpK~AL~ILs~~~~~~l~~---aI~~~D~~~L~~vpGIG~KtA~rIi~ELk~K  131 (198)
T PRK00116         57 AQLLYGFLTKEERELFRLLISVSGVGPKLALAILSGLSPEELAQ---AIANGDIKALTKVPGVGKKTAERIVLELKDK  131 (198)
T ss_pred             CCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHH---HHHHCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             87578408889999999985668857899998870299999999---9985899997068897889999999999988