HHsearch alignment for GI: 254780383 and conserved domain: PRK00116
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed.
Probab=91.79 E-value=0.33 Score=28.76 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=44.7
Q ss_pred CCCCHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 762000101268999999997-300379999997523--554442001000014567776432358888999987542
Q gi|254780383|r 77 ADTPQKMLAIGEKKLQNYIRT-IGIYRKKSENIISLS--HILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGI 151 (227)
Q Consensus 77 ypt~e~l~~a~~~el~~~ir~-~G~~~~KAk~I~~~a--~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~ 151 (227)
T Consensus 57 ~~~LyGF~~~~Er~~F~~Li~V~GIGpK~AL~ILs~~~~~~l~~---aI~~~D~~~L~~vpGIG~KtA~rIi~ELk~K 131 (198)
T PRK00116 57 AQLLYGFLTKEERELFRLLISVSGVGPKLALAILSGLSPEELAQ---AIANGDIKALTKVPGVGKKTAERIVLELKDK 131 (198)
T ss_pred CCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHH---HHHHCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87578408889999999985668857899998870299999999---9985899997068897889999999999988