HHsearch alignment for GI: 254780383 and conserved domain: TIGR01083
>TIGR01083 nth endonuclease III; InterPro: IPR005759 The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. Escherichia coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. Human hNTH1 protein, a homolog of E. coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs . ; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=100.00 E-value=0 Score=498.54 Aligned_cols=191 Identities=52% Similarity=0.936 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999976799987777868999999999633320356799899873176200010126899999999730037
Q gi|254780383|r 23 KELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYR 102 (227)
Q Consensus 23 ~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~ 102 (227)
T Consensus 2 ~~~~~il~~L~~~yP~p~tEL~~~~PFeLLVAtiLSAQ~TD~~VNkaT~~LF~~Y~tp~~~a~a~~eel~~~Ik~iGlYr 81 (192)
T TIGR01083 2 QKAQEILERLRKLYPHPTTELDYKNPFELLVATILSAQATDKSVNKATKKLFEVYPTPQALAAAGLEELEEYIKSIGLYR 81 (192)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHCCHHHHHCCCCHHHHHCCCHHHHHHHHHCCCCCH
T ss_conf 40789999999738997254333070789999999865313267631678651277868996089313477642258645
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999975235544420010000145677764323588889999875421000121046787765654078889999999
Q gi|254780383|r 103 KKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGKTPNKVEQSL 182 (227)
Q Consensus 103 ~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~~~~~~~~~~~l 182 (227)
T Consensus 82 ~KAk~I~~~~~~LvE~y~GeVP~~~~eL~~LPGVGRKTANVVL~~aFg~P~iAVDTHv~Rv~~Rlgl~~~~dp~~vE~~L 161 (192)
T TIGR01083 82 NKAKNIIALCRKLVERYGGEVPEDREELVKLPGVGRKTANVVLNVAFGIPAIAVDTHVFRVSNRLGLSKGKDPDKVEEEL 161 (192)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 68999999999999981898775537661789987114562433442687057414346554331357778989999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 6218842267899999999665164899894
Q gi|254780383|r 183 LRIIPPKHQYNAHYWLVLHGRYVCKARKPQC 213 (227)
Q Consensus 183 ~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C 213 (227)
T Consensus 162 ~~l~P~~~w~~~hh~lIlHGRy~CkAr~P~C 192 (192)
T TIGR01083 162 LKLIPKEFWTKLHHWLILHGRYTCKARKPRC 192 (192)
T ss_pred HHHCCCCCHHHCCHHHHHHCCCCCCCCCCCC
T ss_conf 8744850012223675431111116888889