HHsearch alignment for GI: 254780383 and conserved domain: pfam00730

>pfam00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein. This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family.
Probab=99.96  E-value=2.2e-29  Score=218.60  Aligned_cols=136  Identities=40%  Similarity=0.677  Sum_probs=125.4

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCC--CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH---
Q ss_conf             9999963332035679989987317--62000101268999999997300379999997523554442001000014---
Q gi|254780383|r   53 VAVLLSAQSTDVNVNKATKHLFEIA--DTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTL---  127 (227)
Q Consensus        53 Va~iLs~qT~d~~v~~~~~~L~~~y--pt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~---  127 (227)
T Consensus         1 V~~IlsQq~s~~~a~~i~~rl~~~~~~pt~~~l~~~~~~~l~~~i~~~G~~~~Ka~~I~~~a~~~~~~~~~~~~~~~~~~   80 (144)
T pfam00730         1 VSAILSQQTSDKAANKITKRLFERYGFPTPEDLAEADEEELRELIKGLGFYRRKAKYIKELARILVEGYLGLVPLDLEEL   80 (144)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             95542012349999999999999828989999985999999999870897699999999999888986289788611569


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHCCCH
Q ss_conf             5677764323588889999875421--000121046787765654078-889999999621884
Q gi|254780383|r  128 EGLTRLPGIGRKGANVILSMAFGIP--TIGVDTHIFRISNRIGLAPGK-TPNKVEQSLLRIIPP  188 (227)
Q Consensus       128 ~~L~~LpGVG~ktA~~il~~~~~~p--~~~VDthv~Rv~~Rlgl~~~~-~~~~~~~~l~~~~p~  188 (227)
T Consensus        81 ~~L~~l~GIG~~ta~~~l~~~~~~~d~~~~~D~~v~r~~~rl~~~~~~~~~~~~~~~l~~~~~p  144 (144)
T pfam00730        81 EALLALPGVGRWTAEAVLLFALGRPDVFPAVDTHVRRVAKRLGLIKEKPTPEEVERELEELWPP  144 (144)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             9986088976999999999986999873264499999999977998999999999998713788