HHsearch alignment for GI: 254780383 and conserved domain: smart00478

>smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

Probab=100.00  E-value=1.8e-39  Score=286.56  Aligned_cols=148  Identities=43%  Similarity=0.733  Sum_probs=143.7

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             96333203567998998731762000101268999999997300379999997523554442001000014567776432
Q gi|254780383|r   57 LSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGI  136 (227)
Q Consensus        57 Ls~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGV  136 (227)
T Consensus         1 LSqqt~~~~v~~~~~~l~~~~pt~~~l~~a~~~~l~~~i~~~g~~~~ka~~i~~~a~~i~~~~~~~~p~~~~~L~~lpGV   80 (149)
T smart00478        1 LSQQTSDEAVNKATERLFEKFPTPEDLAAADEEELEELIRPLGFYRRKAKYLIELARILVEEYGGEVPDDREELLKLPGV   80 (149)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCC
T ss_conf             99865289999999999998859999986899999999998688999999999999999986655588559998758986


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             3588889999875421000121046787765654078-8899999996218842267899999999665
Q gi|254780383|r  137 GRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGK-TPNKVEQSLLRIIPPKHQYNAHYWLVLHGRY  204 (227)
Q Consensus       137 G~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~~~-~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~  204 (227)
T Consensus        81 G~~tA~~vl~~~~~~~~~~vD~~v~Rv~~R~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~l~~~G~~  149 (149)
T smart00478       81 GRKTANAVLSFALGKPFIPVDTHVLRIAKRLGLVDKKSTPEEVEKLLEKLLPKEDWRELNLLLIDFGRT  149 (149)
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf             599999999998799835134139999999847888898999999999878934399999999981899