HHsearch alignment for GI: 254780383 and conserved domain: smart00483
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=93.17 E-value=0.57 Score=27.20 Aligned_cols=147 Identities=17% Similarity=0.270 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999976799987777868999999999633320356799899873176200010126899999999730037
Q gi|254780383|r 23 KELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYR 102 (227)
Q Consensus 23 ~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~ 102 (227)
T Consensus 4 ~~i~~~L~~la~~~e-----~~Gen~~k~~------ay------~~Aa-~~i~~l~~~--i~--~~~~l~~-ipGIG--~ 58 (334)
T smart00483 4 RGIIDALEILAENYE-----VFGENKRKCS------YF------RKAA-SVLKSLPFP--IN--SMKDLKG-LPGIG--D 58 (334)
T ss_pred HHHHHHHHHHHHHHH-----HCCCCHHHHH------HH------HHHH-HHHHHCCCC--CC--CHHHHCC-CCCCC--H
T ss_conf 999999999999999-----8599777899------99------9999-999859835--58--9999727-99987--8
Q ss_pred HHHHHHHHHHHH--H--HHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHH--HHHHHHCC
Q ss_conf 999999752355--4--442-001000014567776432358888999987542100012104---6787--76565407
Q gi|254780383|r 103 KKSENIISLSHI--L--INE-FDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHI---FRIS--NRIGLAPG 172 (227)
Q Consensus 103 ~KAk~I~~~a~~--i--~~~-~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv---~Rv~--~Rlgl~~~ 172 (227)
T Consensus 59 ~ia~kI~Eil~TG~~~~~e~~~~~~~~~~l~el~~I~GvGpk~a~~l--~~~Gi~tl~-dL~~a~~~~l~~~q~~G---- 131 (334)
T smart00483 59 KIKKKIEEIIETGKSSKVLEILNDEVYKSLKLFTNVFGVGPKTAAKW--YRKGIRTLE-ELKKNKELKLTKQQKAG---- 131 (334)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHH--HHCCCCCHH-HHHHHHHHHHHHHHHHH----
T ss_conf 99999999998499489999872865168999853888778999999--984988799-99987887678898876----
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88899999996218842267899999999665
Q gi|254780383|r 173 KTPNKVEQSLLRIIPPKHQYNAHYWLVLHGRY 204 (227)
Q Consensus 173 ~~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~ 204 (227)
T Consensus 132 ---lk~~ed~~~rIpr~e~~~~~~~i~~~l~~ 160 (334)
T smart00483 132 ---LKYYEDILKKVSRAEAFAVEYIVKRAVRK 160 (334)
T ss_pred ---HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf ---99999997268199999999999999985