HHsearch alignment of GI: 254780383 and MMDB domain: 1ngn_A_1-129
>1ngn_A (A:1-129) Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus}
Probab=99.89 E-value=3.5e-24 Score=183.06 Aligned_cols=115 Identities=13% Similarity=0.208 Sum_probs=102.6
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997679998777786899999999963332035679989987317620001012689999999973003799999975
Q gi|254780383|r 31 LFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIIS 110 (227)
Q Consensus 31 ~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~ 110 (227)
.+.+.|+ +..+....|||+.||++||||||+++++++++.+|+++|+||++++.++.++++++|+++||+++||++|++
T Consensus 15 ~l~~~~~-~~~~~~~~~pfe~Li~~Il~Qq~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~Ka~~i~~ 93 (129)
T 1ngn_A 15 PPRSPFN-LVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIK 93 (129)
T ss_dssp CCCCTTC-CTHHHHTTSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred CCCCCCC-HHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9998642-146551598589999999986186999999999999988799999716758689898124479999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2355444200100001456777643235888899998754210
Q gi|254780383|r 111 LSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPT 153 (227)
Q Consensus 111 ~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~ 153 (227)
+++.+++ +.+++|++|||||+|||++||+|+||+|-
T Consensus 94 ~a~~~~~-------e~~~~L~~l~GIG~~tA~~vll~~~grP~ 129 (129)
T 1ngn_A 94 FSDEYLT-------KQWRYPIELHGIGKYGNDSYRIFCVNEWK 129 (129)
T ss_dssp HHHHHHH-------SCCSSGGGSTTCCHHHHHHHHHHTSSCGG
T ss_pred HHHHHHH-------HHHHHHHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf 9824666-------34766562799668999999999769988