HHsearch results for GI: 254780383 and protein with PDBid: 1kea_A
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation, base twisting, hydrolase; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.96.1.2
Probab=100.00 E-value=0 Score=414.37 Aligned_cols=207 Identities=19% Similarity=0.406 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCC---CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf 9899999999999976799987777---8689999999996333203567998998731762000101268999999997
Q gi|254780383|r 21 TPKELEEIFYLFSLKWPSPKGELYY---VNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRT 97 (227)
Q Consensus 21 ~~~~~~~I~~~L~~~yp~~~~~l~~---~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~ 97 (227)
+.++.+.+...|.+||+..+.+|+| +|||++||++||||||+|++|++++++|+++||||++|+++++++|+++|++
T Consensus 5 ~~~~~~~~~~~ll~wy~~~~r~lpWr~~~dp~~vlv~~iLsqqT~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~ 84 (221)
T 1kea_A 5 TNKKRKVFVSTILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKE 84 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCGGGGCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH
T ss_conf 07789999999999999669999999899879999999998219599999999999997889999982999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----
Q ss_conf 3003799999975235544420010000145677764323588889999875421000121046787765654078----
Q gi|254780383|r 98 IGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGK---- 173 (227)
Q Consensus 98 ~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~~~---- 173 (227)
+|||++||++|++++++|.++|||.+|.++++|++|||||+|||++||+|+||+|+|+||+||+||++|+|+...+
T Consensus 85 ~G~~~~KA~~l~~~a~~i~~~~~g~vp~~~~eL~~LPGVG~ktA~~vl~~a~~~~~~~VD~~v~Rv~~R~~~~~~~~~~~ 164 (221)
T 1kea_A 85 IGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNY 164 (221)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCCCCCCCCH
T ss_conf 78999999999999999988605873012888744898765679999998538874010449999999980678899426
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf 889999999621884226789999999966516489989472840331768519
Q gi|254780383|r 174 TPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ 227 (227)
Q Consensus 174 ~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~ 227 (227)
+..++...+..++|++.|.+||++||+||+.||++++|+|+.|||++.|+||+|
T Consensus 165 ~~~~l~~~~~~l~p~~~~~~~~~~l~~~G~~vC~~~~P~C~~Cpl~~~C~~y~k 218 (221)
T 1kea_A 165 NHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEK 218 (221)
T ss_dssp TSHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 799999999862880329999999999968870388999988988010847277