HHsearch results for GI: 254780383 and protein with PDBid: 1mpg_A
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A*
Probab=99.72 E-value=8.9e-17 Score=132.19 Aligned_cols=150 Identities=21% Similarity=0.251 Sum_probs=113.4
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------CCCCHHHCCCCHHHHHH
Q ss_conf 99999999767999877778689999999996333203567998998731-------------76200010126899999
Q gi|254780383|r 27 EIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEI-------------ADTPQKMLAIGEKKLQN 93 (227)
Q Consensus 27 ~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~-------------ypt~e~l~~a~~~el~~ 93 (227)
..+..+...+|..+-+-.+ |||+.||.+|++||.+......++.+|.++ ||||+.++.++.++|
T Consensus 93 ~~L~~l~~~~pGlR~p~~~-d~fE~lvraIlgQQvS~~aA~~i~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L-- 169 (282)
T 1mpg_A 93 GALGRLGAARPGLRLPGCV-DAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL-- 169 (282)
T ss_dssp HHHGGGGTTCTTCCCCCCS-CHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH--
T ss_pred HHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHH--
T ss_conf 8988899868997688999-9999999999827451999999999999986887776765457777999974999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC-CCHHHHHHHH
Q ss_conf 99973003799999975235544420-0----10000145677764323588889999875421-0001-2104678776
Q gi|254780383|r 94 YIRTIGIYRKKSENIISLSHILINEF-D----NKIPQTLEGLTRLPGIGRKGANVILSMAFGIP-TIGV-DTHIFRISNR 166 (227)
Q Consensus 94 ~ir~~G~~~~KAk~I~~~a~~i~~~~-~----g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p-~~~V-Dthv~Rv~~R 166 (227)
+.+|+..+|+++|+++|+.+.+.- + ....+.++.|++|||||++||++|+++++|+| +||+ |.++.|-+.+
T Consensus 170 --r~~Gls~~ka~~i~~lA~~~~~g~l~~~~~~~~ee~~~~L~~l~GIGpWTA~~vll~~lg~~D~fp~~Dl~l~~~~~~ 247 (282)
T 1mpg_A 170 --KALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPG 247 (282)
T ss_dssp --HHTTSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHSTT
T ss_pred --HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf --654886047999999999997498421343688999999997679886999999999769988387434999987410
Q ss_pred HHHHCCCCHHHHHHHHHHCCC
Q ss_conf 565407888999999962188
Q gi|254780383|r 167 IGLAPGKTPNKVEQSLLRIIP 187 (227)
Q Consensus 167 lgl~~~~~~~~~~~~l~~~~p 187 (227)
+ ++.+++...+.+-|
T Consensus 248 l------~~~~~~~~ae~w~P 262 (282)
T 1mpg_A 248 M------TPAQIRRYAERWKP 262 (282)
T ss_dssp C------CHHHHHHHHGGGTT
T ss_pred C------CHHHHHHHHHHCCC
T ss_conf 8------99999999985569