HHsearch results for GI: 254780383 and protein with PDBid: 1orn_A

>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00  E-value=0  Score=436.89  Aligned_cols=210  Identities=40%  Similarity=0.717  Sum_probs=204.7

Q ss_pred             HCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf             23998999999999999767999877778689999999996333203567998998731762000101268999999997
Q gi|254780383|r   18 CLYTPKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRT   97 (227)
Q Consensus        18 ~~~~~~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~   97 (227)
                      -|.+++++.+|+++|.++||+++.+|+|+|||++||++||||||+|++|++++++|+++||||++++.++.+|++++|++
T Consensus         3 ~m~~~~~~~~i~~~L~~~y~~~~~~l~~rdP~~vLVs~iLsqqT~~~~v~~~~~~l~~~~p~~~~la~a~~~el~~~i~~   82 (226)
T 1orn_A            3 HMLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRS   82 (226)
T ss_dssp             -CCCHHHHHHHHHHHHHHCTTCCCCSCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTGG
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH
T ss_conf             77889999999999998779999999989979999999998408599999999999871399999863899899898874


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CCCHH
Q ss_conf             30037999999752355444200100001456777643235888899998754210001210467877656540-78889
Q gi|254780383|r   98 IGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAP-GKTPN  176 (227)
Q Consensus        98 ~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~-~~~~~  176 (227)
                      +|||++||++|+++++.|+++|+|.+|.++++|++|||||+|||++||+|+||+|+|+|||||+||++|+|+++ ++++.
T Consensus        83 ~g~y~~ka~~i~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~kTA~~il~~a~~~p~~~VDtnv~RV~~Rlg~~~~~~~~~  162 (226)
T 1orn_A           83 IGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVL  162 (226)
T ss_dssp             GSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHH
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHH
T ss_conf             22199999999999999999929979878999974877536799999999816886778855568998828666554036


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf             999999621884226789999999966516489989472840331768519
Q gi|254780383|r  177 KVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ  227 (227)
Q Consensus       177 ~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~  227 (227)
                      +++..+++++|.+.|.+||++||+||+.||++++|+|+.|||++.|++|++
T Consensus       163 ~~~~~l~~~~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~CPl~~~C~~~~~  213 (226)
T 1orn_A          163 EVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKK  213 (226)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHH
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHHHC
T ss_conf             789999983865330599999999999884589999998988221678771