HHsearch results for GI: 254780383 and protein with PDBid: 1orn_A
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=0 Score=436.89 Aligned_cols=210 Identities=40% Similarity=0.717 Sum_probs=204.7
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf 23998999999999999767999877778689999999996333203567998998731762000101268999999997
Q gi|254780383|r 18 CLYTPKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRT 97 (227)
Q Consensus 18 ~~~~~~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~ 97 (227)
-|.+++++.+|+++|.++||+++.+|+|+|||++||++||||||+|++|++++++|+++||||++++.++.+|++++|++
T Consensus 3 ~m~~~~~~~~i~~~L~~~y~~~~~~l~~rdP~~vLVs~iLsqqT~~~~v~~~~~~l~~~~p~~~~la~a~~~el~~~i~~ 82 (226)
T 1orn_A 3 HMLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRS 82 (226)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCCCCSCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH
T ss_conf 77889999999999998779999999989979999999998408599999999999871399999863899899898874
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CCCHH
Q ss_conf 30037999999752355444200100001456777643235888899998754210001210467877656540-78889
Q gi|254780383|r 98 IGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAP-GKTPN 176 (227)
Q Consensus 98 ~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~-~~~~~ 176 (227)
+|||++||++|+++++.|+++|+|.+|.++++|++|||||+|||++||+|+||+|+|+|||||+||++|+|+++ ++++.
T Consensus 83 ~g~y~~ka~~i~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~kTA~~il~~a~~~p~~~VDtnv~RV~~Rlg~~~~~~~~~ 162 (226)
T 1orn_A 83 IGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVL 162 (226)
T ss_dssp GSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHH
T ss_conf 22199999999999999999929979878999974877536799999999816886778855568998828666554036
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf 999999621884226789999999966516489989472840331768519
Q gi|254780383|r 177 KVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ 227 (227)
Q Consensus 177 ~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~ 227 (227)
+++..+++++|.+.|.+||++||+||+.||++++|+|+.|||++.|++|++
T Consensus 163 ~~~~~l~~~~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~CPl~~~C~~~~~ 213 (226)
T 1orn_A 163 EVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKK 213 (226)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHHHC
T ss_conf 789999983865330599999999999884589999998988221678771