HHsearch results for GI: 254780383 and protein with PDBid: 1pu6_A
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=100.00 E-value=1.1e-43 Score=313.38 Aligned_cols=183 Identities=20% Similarity=0.216 Sum_probs=163.0
Q ss_pred HHHHHHHHHH---CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------CCCHHHCCCCHHHHHHHH
Q ss_conf 9999999997---679998777786899999999963332035679989987317-------620001012689999999
Q gi|254780383|r 26 EEIFYLFSLK---WPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIA-------DTPQKMLAIGEKKLQNYI 95 (227)
Q Consensus 26 ~~I~~~L~~~---yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~y-------pt~e~l~~a~~~el~~~i 95 (227)
.||++.|... ...|..|++.++||++||++||||||++++|.+++.+|+++| |||++++++++++|+++|
T Consensus 5 ~~~~~~l~~~~~~~~~p~~W~p~~~pfe~lv~~IL~Qqt~~~~v~~a~~~L~~~~~~~~~~~~t~~~la~a~~~eL~~~i 84 (218)
T 1pu6_A 5 FEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECV 84 (218)
T ss_dssp HHHHHHHHTTTTTTTSCTTSSTTTTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHH
T ss_conf 99999999989982899999999987999999999466989999999999999875201248999999779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 97300379999997523554442001----00001456777643235888899998754210001210467877656540
Q gi|254780383|r 96 RTIGIYRKKSENIISLSHILINEFDN----KIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAP 171 (227)
Q Consensus 96 r~~G~~~~KAk~I~~~a~~i~~~~~g----~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~ 171 (227)
+++|||++||++|+++|+.++++|++ .+|.++++|++|||||+|||++||+|+|++|+|+||+||+||++|+||.+
T Consensus 85 r~~G~~~~Ka~~l~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~~~~vD~~v~Rv~~Rlg~~~ 164 (218)
T 1pu6_A 85 RPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEI 164 (218)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCCC
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 98799589999999999999986631037994679999984899669999999999879980620425999999908988
Q ss_pred CCCHHHHHHHHHHCCCHH----------------HHHHHHHHHHHHHHHHCCCC
Q ss_conf 788899999996218842----------------26789999999966516489
Q gi|254780383|r 172 GKTPNKVEQSLLRIIPPK----------------HQYNAHYWLVLHGRYVCKAR 209 (227)
Q Consensus 172 ~~~~~~~~~~l~~~~p~~----------------~~~~~~~~li~~G~~iC~~~ 209 (227)
+++++++..+++.+|++ .+.+||.+||.|||++|+++
T Consensus 165 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~efH~~iv~~Gk~~C~ak 217 (218)
T 1pu6_A 165 -EDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELK 217 (218)
T ss_dssp -CSHHHHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -99999999999886898999887750002089999999999999869877898