HHsearch results for GI: 254780383 and protein with PDBid: 2abk_A
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=0 Score=436.94 Aligned_cols=206 Identities=48% Similarity=0.870 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 89999999999997679998777786899999999963332035679989987317620001012689999999973003
Q gi|254780383|r 22 PKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIY 101 (227)
Q Consensus 22 ~~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~ 101 (227)
+++..+|+.+|.+.||+++.+|+++|||++||++||||||+|++|++++++|+++||||++++++++++|+++|+++|||
T Consensus 3 ~~~~~ei~~~L~~~~~~~~~~l~~~~p~~ili~~iLsqqT~~~~v~~~~~~L~~~~~t~~~la~a~~~~l~~~i~~~G~y 82 (211)
T 2abk_A 3 KAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLY 82 (211)
T ss_dssp HHHHHHHHHHHHHHCSSCCCSSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCHH
T ss_conf 89999999999997899999888998699999999974086899999999999875899998627999999999862179
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 79999997523554442001000014567776432358888999987542100012104678776565407888999999
Q gi|254780383|r 102 RKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGKTPNKVEQS 181 (227)
Q Consensus 102 ~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~~~~~~~~~~~ 181 (227)
++||++|+++|+.|+++|||.+|.++++|++|||||+|||++||+|+||+|+|+|||||+||++|+|+++++++++++..
T Consensus 83 ~~Ka~~l~~~a~~i~~~~~g~~p~~~~~L~~LpGVG~kTA~~il~~a~~~~~~~VDtnv~Rv~~R~g~~~~~~~~~~~~~ 162 (211)
T 2abk_A 83 NSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEK 162 (211)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999999999999998489998329998717887369999999987358862146227789998576789988999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf 9621884226789999999966516489989472840331768519
Q gi|254780383|r 182 LLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ 227 (227)
Q Consensus 182 l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~ 227 (227)
+.+++|.+.|.++|++||+||+.+|++++|+|+.|||++.|+||+|
T Consensus 163 ~~~~~p~~~~~~~~~~l~~~G~~vC~~r~P~C~~Cpl~~~C~y~~k 208 (211)
T 2abk_A 163 LLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEK 208 (211)
T ss_dssp HHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred HHHCCCCCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8721760127999999999700132599999999989054988677