HHsearch results for GI: 254780383 and protein with PDBid: 2fmp_A
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=91.32 E-value=0.28 Score=27.86 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 89999999999997679998777786899999999963332035679989987317620001012689999999973003
Q gi|254780383|r 22 PKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIY 101 (227)
Q Consensus 22 ~~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~ 101 (227)
-+++-+++..|...|. .. ..|+|++.= =.+|...+ +.+|. .+. +.+++.+ |.++|
T Consensus 12 N~~i~~~l~~la~~~~-~~----ge~~fk~~A------------Y~rAa~~i-~~l~~--~i~--~~~~l~~-i~GiG-- 66 (335)
T 2fmp_A 12 NGGITDMLTELANFEK-NV----SQAIHKYNA------------YRKAASVI-AKYPH--KIK--SGAEAKK-LPGVG-- 66 (335)
T ss_dssp THHHHHHHHHHHHHHH-HT----TCCHHHHHH------------HHHHHHHH-HHCSS--CCC--CHHHHHT-STTCC--
T ss_pred CHHHHHHHHHHHHHHH-HC----CCCCHHHHH------------HHHHHHHH-HHCCC--CCC--CHHHHHC-CCCCC--
T ss_conf 0999999999999999-74----898278999------------99999999-85995--667--8898836-99974--
Q ss_pred HHHHHHHHHHHHH----HHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHH--HHHHHHHCC
Q ss_conf 7999999752355----444200100-00145677764323588889999875421000121--04678--776565407
Q gi|254780383|r 102 RKKSENIISLSHI----LINEFDNKI-PQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDT--HIFRI--SNRIGLAPG 172 (227)
Q Consensus 102 ~~KAk~I~~~a~~----i~~~~~g~v-P~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDt--hv~Rv--~~Rlgl~~~ 172 (227)
..=+..|.++.+. -.++..... |...+.|.++||||+++|.... ..|...+- |- +-..+ ..++|+
T Consensus 67 ~~i~~kI~Eil~tG~~~~le~l~~~~~~~~l~~l~~I~GvGpk~a~~l~--~~Gi~ti~-dL~~~~~kl~~~q~~gl--- 140 (335)
T 2fmp_A 67 TKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFV--DEGIKTLE-DLRKNEDKLNHHQRIGL--- 140 (335)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHH--HTTCCSHH-HHHTCGGGSCHHHHHHH---
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHH--HCCCCCHH-HHHHHHHHHHHHHHHHH---
T ss_conf 8999999999982977899998717964678998745687989999999--81887599-99877887688999889---
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 888999999962188422678999999996651
Q gi|254780383|r 173 KTPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYV 205 (227)
Q Consensus 173 ~~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~i 205 (227)
+...++.+.+|.+....+...+..+-+.+
T Consensus 141 ----~~~~d~~~ripr~e~~~~~~~i~~~l~~~ 169 (335)
T 2fmp_A 141 ----KYFGDFEKRIPREEMLQMQDIVLNEVKKV 169 (335)
T ss_dssp ----HTHHHHTSCEEHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf ----99998874315999998778899999745