HHsearch results for GI: 254780383 and protein with PDBid: 2ihm_A
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=94.95 E-value=0.22 Score=28.46 Aligned_cols=157 Identities=19% Similarity=0.188 Sum_probs=73.6
Q ss_pred CCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHH
Q ss_conf 78600239989999999999997679998777786899999999963332035679989987317620001012689999
Q gi|254780383|r 13 NSPLGCLYTPKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQ 92 (227)
Q Consensus 13 ~~p~~~~~~~~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~ 92 (227)
++|+.+ .-+++-+++..|.+.|. .. .|+|++. +- .+|...+ +.+|.+ +.+. +++.
T Consensus 10 ~~~~~~--~N~~i~~~l~~la~~~~-~~-----g~~fr~~-----aY-------~~Aa~~i-~~l~~~--i~~~--~~~~ 64 (360)
T 2ihm_A 10 PSPLTH--HNTLLSEALETLAEAAG-FE-----ANEGRLL-----SF-------SRAASVL-KSLPCP--VASL--SQLH 64 (360)
T ss_dssp CBCSSC--SCHHHHHHHHHHHHHHH-HT-----TCHHHHH-----HH-------HHHHHHH-HHCSSC--CCSG--GGGT
T ss_pred CCCCCC--CHHHHHHHHHHHHHHHH-HC-----CCCHHHH-----HH-------HHHHHHH-HHCCCC--CCCH--HHHH
T ss_conf 999989--65999999999999999-75-----9948799-----99-------9999999-859977--8999--9983
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC--HHHHHH
Q ss_conf 9999730037999999752355----444200-10000145677764323588889999875421000-121--046787
Q gi|254780383|r 93 NYIRTIGIYRKKSENIISLSHI----LINEFD-NKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIG-VDT--HIFRIS 164 (227)
Q Consensus 93 ~~ir~~G~~~~KAk~I~~~a~~----i~~~~~-g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~-VDt--hv~Rv~ 164 (227)
+ |.++| ..=+..|.++.+. -.++.. ...|....+|.++||||+++|.... ..|...+. +-. +-.+..
T Consensus 65 ~-i~gIG--~~i~~kI~e~l~tG~~~~le~l~~~~~~~~l~~l~~i~GvGpk~a~~l~--~~Gi~si~dL~~~~~~l~~~ 139 (360)
T 2ihm_A 65 G-LPYFG--EHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWY--QEGLRTLDELREQPQRLTQQ 139 (360)
T ss_dssp T-CTTCC--HHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHH--HTTCCSHHHHHTCCTTCCHH
T ss_pred C-CCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH--HCCCCCHHHHHHHHHHHHHH
T ss_conf 6-99987--8999999999953868999988622157999999757787899999999--83988799998778750154
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 765654078889999999621884226789999999966516
Q gi|254780383|r 165 NRIGLAPGKTPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYVC 206 (227)
Q Consensus 165 ~Rlgl~~~~~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~iC 206 (227)
.++|+ +...++..-+|.+....+...+...-+.++
T Consensus 140 q~~Gl-------k~~~dl~~~Ipr~e~~~~~~~i~~~l~~~~ 174 (360)
T 2ihm_A 140 QKAGL-------QYYQDLSTPVRRADAEALQQLIEAAVRQTL 174 (360)
T ss_dssp HHHHH-------HTHHHHHSCEEHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 65333-------239999855336566899999999997059