HHsearch results for GI: 254780383 and protein with PDBid: 2ihm_A

>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=94.95  E-value=0.22  Score=28.46  Aligned_cols=157  Identities=19%  Similarity=0.188  Sum_probs=73.6

Q ss_pred             CCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHH
Q ss_conf             78600239989999999999997679998777786899999999963332035679989987317620001012689999
Q gi|254780383|r   13 NSPLGCLYTPKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQ   92 (227)
Q Consensus        13 ~~p~~~~~~~~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~   92 (227)
                      ++|+.+  .-+++-+++..|.+.|. ..     .|+|++.     +-       .+|...+ +.+|.+  +.+.  +++.
T Consensus        10 ~~~~~~--~N~~i~~~l~~la~~~~-~~-----g~~fr~~-----aY-------~~Aa~~i-~~l~~~--i~~~--~~~~   64 (360)
T 2ihm_A           10 PSPLTH--HNTLLSEALETLAEAAG-FE-----ANEGRLL-----SF-------SRAASVL-KSLPCP--VASL--SQLH   64 (360)
T ss_dssp             CBCSSC--SCHHHHHHHHHHHHHHH-HT-----TCHHHHH-----HH-------HHHHHHH-HHCSSC--CCSG--GGGT
T ss_pred             CCCCCC--CHHHHHHHHHHHHHHHH-HC-----CCCHHHH-----HH-------HHHHHHH-HHCCCC--CCCH--HHHH
T ss_conf             999989--65999999999999999-75-----9948799-----99-------9999999-859977--8999--9983


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC--HHHHHH
Q ss_conf             9999730037999999752355----444200-10000145677764323588889999875421000-121--046787
Q gi|254780383|r   93 NYIRTIGIYRKKSENIISLSHI----LINEFD-NKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIG-VDT--HIFRIS  164 (227)
Q Consensus        93 ~~ir~~G~~~~KAk~I~~~a~~----i~~~~~-g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~-VDt--hv~Rv~  164 (227)
                      + |.++|  ..=+..|.++.+.    -.++.. ...|....+|.++||||+++|....  ..|...+. +-.  +-.+..
T Consensus        65 ~-i~gIG--~~i~~kI~e~l~tG~~~~le~l~~~~~~~~l~~l~~i~GvGpk~a~~l~--~~Gi~si~dL~~~~~~l~~~  139 (360)
T 2ihm_A           65 G-LPYFG--EHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWY--QEGLRTLDELREQPQRLTQQ  139 (360)
T ss_dssp             T-CTTCC--HHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHH--HTTCCSHHHHHTCCTTCCHH
T ss_pred             C-CCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH--HCCCCCHHHHHHHHHHHHHH
T ss_conf             6-99987--8999999999953868999988622157999999757787899999999--83988799998778750154


Q ss_pred             HHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             765654078889999999621884226789999999966516
Q gi|254780383|r  165 NRIGLAPGKTPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYVC  206 (227)
Q Consensus       165 ~Rlgl~~~~~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~iC  206 (227)
                      .++|+       +...++..-+|.+....+...+...-+.++
T Consensus       140 q~~Gl-------k~~~dl~~~Ipr~e~~~~~~~i~~~l~~~~  174 (360)
T 2ihm_A          140 QKAGL-------QYYQDLSTPVRRADAEALQQLIEAAVRQTL  174 (360)
T ss_dssp             HHHHH-------HTHHHHHSCEEHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             65333-------239999855336566899999999997059