HHsearch results for GI: 254780383 and protein with PDBid: 3fsp_A
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=0 Score=394.10 Aligned_cols=202 Identities=19% Similarity=0.352 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCC---CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999976799987777---86899999999963332035679989987317620001012689999999973003
Q gi|254780383|r 25 LEEIFYLFSLKWPSPKGELYY---VNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIY 101 (227)
Q Consensus 25 ~~~I~~~L~~~yp~~~~~l~~---~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~ 101 (227)
.+++...|.+||......|+| .|||++|||+||||||+|++|.+++++|+++|||+++|++|+++||+++|+++|||
T Consensus 13 ~~~~~~~ll~wy~~~~r~lpWr~~~~py~vlvseil~qqT~~~~v~~~~~~~~~~~pt~~~la~a~~~ev~~~~~~lGyy 92 (369)
T 3fsp_A 13 AREFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY 92 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCGGGSCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHTTTTSSCT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCHH
T ss_conf 99999999999984698899898998799999999861087889999999999977899999778999999998746889
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-C----HH
Q ss_conf 799999975235544420010000145677764323588889999875421000121046787765654078-8----89
Q gi|254780383|r 102 RKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGK-T----PN 176 (227)
Q Consensus 102 ~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~~~-~----~~ 176 (227)
+ ||++|+++|++|+++|+|.+|.++++|++|||||+|||++||+++||+|+++||+||+||++|+|...+. + ..
T Consensus 93 ~-ra~~l~~~a~~i~~~~~g~~P~~~~~L~~LpGVG~~TA~ail~~a~~~~~~~vD~nv~Rv~~R~~~~~~~~~~~~~~~ 171 (369)
T 3fsp_A 93 S-RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRK 171 (369)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHH
T ss_pred H-HHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 9-999998521227600489999879998524225889999999986148861224851356754304468887511467
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf 999999621884226789999999966516489989472840331768519
Q gi|254780383|r 177 KVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ 227 (227)
Q Consensus 177 ~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~ 227 (227)
.++..+..++|.+.|.++|++||+||+.||++++|+|+.|||++.|.+|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~nqalmdlG~~iC~~~~P~C~~CPl~~~C~~~~~ 222 (369)
T 3fsp_A 172 RFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAE 222 (369)
T ss_dssp HHHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
T ss_conf 788753035876775688999999756415689998988985332776527