HHSEARCH alignment of GI: 254780383 and SCOP domain: d1keaa_

Alignment
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=100.00  E-value=0  Score=412.37  Aligned_cols=207  Identities=19%  Similarity=0.406  Sum_probs=192.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCC---CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf             9899999999999976799987777---8689999999996333203567998998731762000101268999999997
Q gi|254780383|r   21 TPKELEEIFYLFSLKWPSPKGELYY---VNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRT   97 (227)
Q Consensus        21 ~~~~~~~I~~~L~~~yp~~~~~l~~---~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~   97 (227)
                      +.++.+.+...|.+||+..+.+|+|   +|||++||++||||||+|++|++++++|+++||||++|+++++++|+++|+|
T Consensus         3 ~~~~~~~~~~~ll~wy~~~~r~lpWr~~~dp~~vLv~~iLsqqT~~~~v~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~   82 (217)
T d1keaa_           3 TNKKRKVFVSTILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKE   82 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCGGGGCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGG
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             46789999999999998769999999899879999999998019689999999999872340999998638999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----
Q ss_conf             3003799999975235544420010000145677764323588889999875421000121046787765654078----
Q gi|254780383|r   98 IGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGK----  173 (227)
Q Consensus        98 ~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~~~----  173 (227)
                      +|||++||++|+++|+.|+++|||.+|.++++|++|||||+|||++||+|+||+|+++||+||+||++|+|+...+    
T Consensus        83 ~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~LpGVG~kTA~~il~~~~~~~~~~vD~~v~Rv~~R~~~~~~~~~~~  162 (217)
T d1keaa_          83 IGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNY  162 (217)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCH
T ss_conf             98646788899999999886126875302588998876424666788987458732000421101222202667543105


Q ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf             889999999621884226789999999966516489989472840331768519
Q gi|254780383|r  174 TPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ  227 (227)
Q Consensus       174 ~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~  227 (227)
                      +..+++..+..++|.+.|.+||++||+||+.||++++|+|+.|||++.|+||+|
T Consensus       163 ~~~~l~~~~~~~~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~y~k  216 (217)
T d1keaa_         163 NHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEK  216 (217)
T ss_dssp             TSHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHT
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             789999999870881559999999999979865798999988988010847458


SCOP domain information

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Thymine-DNA glycosylase
species: Archaeon Methanobacterium thermoformicicum [TaxId: 145262]