HHSEARCH alignment of GI: 254780383 and SCOP domain: d1mpga1

Alignment
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Probab=99.81  E-value=9.3e-20  Score=150.65  Aligned_cols=143  Identities=22%  Similarity=0.270  Sum_probs=114.0

Q ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             868999999999633320356799899873-------------1762000101268999999997300379999997523
Q gi|254780383|r   46 VNHFTLIVAVLLSAQSTDVNVNKATKHLFE-------------IADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLS  112 (227)
Q Consensus        46 ~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~-------------~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a  112 (227)
                      .|||+.||.+|++||.+.+.....+.+|.+             .||||+.++++++++|    +.+|+.++||++|++++
T Consensus        12 ~dpfe~Lv~~Ii~Qqis~~aA~~i~~rl~~~~g~~~~~~~~~~~FPtp~~l~~~~~~~l----r~~Gls~~Ka~~i~~~a   87 (183)
T d1mpga1          12 VDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIHLA   87 (183)
T ss_dssp             SCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHH----HHCCCCHHHHHHHHHHH
T ss_conf             99999999999805600999999999999986765455643247986999984999899----77599677899999999


Q ss_pred             HHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf             554442-----0010000145677764323588889999875421-0001-21046787765654078889999999621
Q gi|254780383|r  113 HILINE-----FDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIP-TIGV-DTHIFRISNRIGLAPGKTPNKVEQSLLRI  185 (227)
Q Consensus       113 ~~i~~~-----~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p-~~~V-Dthv~Rv~~Rlgl~~~~~~~~~~~~l~~~  185 (227)
                      +.+.+.     .++..++.++.|++|||||++||++||+|++|++ +||+ |.+++|.++.+      ++.+++...+.+
T Consensus        88 ~~~~~g~l~~~~~~~~~e~~~~L~~l~GIGpwTAd~illf~lg~~dvfP~~D~~lr~~~~~l------~~~~~~~~~~~~  161 (183)
T d1mpga1          88 NAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGM------TPAQIRRYAERW  161 (183)
T ss_dssp             HHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHSTTC------CHHHHHHHHGGG
T ss_pred             HHHHCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC------CHHHHHHHHHHC
T ss_conf             99982845543025579999999986453499999999860789984514069999873417------999999999855


Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             8842267899999999
Q gi|254780383|r  186 IPPKHQYNAHYWLVLH  201 (227)
Q Consensus       186 ~p~~~~~~~~~~li~~  201 (227)
                      -|   |..+..+.+.+
T Consensus       162 ~P---yrs~a~~yLW~  174 (183)
T d1mpga1         162 KP---WRSYALLHIWY  174 (183)
T ss_dssp             TT---CHHHHHHHHHT
T ss_pred             CC---HHHHHHHHHHH
T ss_conf             58---99999999998


SCOP domain information

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 3-Methyladenine DNA glycosylase II (gene alkA or aidA)
species: Escherichia coli [TaxId: 562]