HHSEARCH alignment of GI: 254780383 and SCOP domain: d1ngna_

Alignment
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.96  E-value=1.4e-30  Score=223.58  Aligned_cols=116  Identities=13%  Similarity=0.244  Sum_probs=107.4

Q ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             78689999999996333203567998998731762000101268999999997300379999997523554442001000
Q gi|254780383|r   45 YVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIP  124 (227)
Q Consensus        45 ~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP  124 (227)
                      |+|||++||++||||||+|++|++++++||++||||+++++++.++|+++|+++|||++||++|+++|+.+       +|
T Consensus        17 ~~dPf~~LV~~ILsqqT~~~~v~~v~~~L~~~~pt~e~la~a~~~el~~~Ir~~G~~~~KAk~I~~~a~~~-------ip   89 (144)
T d1ngna_          17 FHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEY-------LT   89 (144)
T ss_dssp             TTSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHH-------HH
T ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_conf             49979999999998609799999999999986771021102688999999875424878999999998557-------65


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHH
Q ss_conf             014567776432358888999987542--1000121046787765
Q gi|254780383|r  125 QTLEGLTRLPGIGRKGANVILSMAFGI--PTIGVDTHIFRISNRI  167 (227)
Q Consensus       125 ~~~~~L~~LpGVG~ktA~~il~~~~~~--p~~~VDthv~Rv~~Rl  167 (227)
                      +++++|++|||||+|||+++++|++|.  .+++.|.++.|.+.++
T Consensus        90 ~~~~~l~~LpGVG~~tad~~~if~~~~~~~v~~~D~~l~r~~~~~  134 (144)
T d1ngna_          90 KQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWL  134 (144)
T ss_dssp             SCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             215667866985689999999998599888898773999999999


SCOP domain information

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4
species: Mouse (Mus musculus) [TaxId: 10090]