HHSEARCH alignment of GI: 254780383 and SCOP domain: d1nkua_

Alignment

Probab=90.42  E-value=0.53  Score=24.33  Aligned_cols=74  Identities=20%  Similarity=0.205  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCHHHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHC
Q ss_conf             899999999963332035679989987317--62000101268999999997300--3799999975235544---4200
Q gi|254780383|r   48 HFTLIVAVLLSAQSTDVNVNKATKHLFEIA--DTPQKMLAIGEKKLQNYIRTIGI--YRKKSENIISLSHILI---NEFD  120 (227)
Q Consensus        48 p~~~LVa~iLs~qT~d~~v~~~~~~L~~~y--pt~e~l~~a~~~el~~~ir~~G~--~~~KAk~I~~~a~~i~---~~~~  120 (227)
                      -|+.|+-++.-+==+|..|.+--+.+.+.|  -+|+.++..+++++++++.--|.  .+.|-..++.=|+.++   +++|
T Consensus        31 LFE~L~Le~fQaGLsW~~IL~Kr~~fr~aF~~Fd~~~vA~~~e~~ie~Ll~d~~IIRNr~KI~Avi~NAr~~l~i~~e~g  110 (187)
T d1nkua_          31 LFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGE  110 (187)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHTCCHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999975468799999999999999828998999739999999874557712134789999998999999988449


Q ss_pred             C
Q ss_conf             1
Q gi|254780383|r  121 N  121 (227)
Q Consensus       121 g  121 (227)
                      +
T Consensus       111 s  111 (187)
T d1nkua_         111 P  111 (187)
T ss_dssp             C
T ss_pred             C
T ss_conf             8

SCOP domain information

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]