HHSEARCH alignment of GI: 254780383 and SCOP domain: d1orna_

Alignment
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=432.10  Aligned_cols=209  Identities=41%  Similarity=0.716  Sum_probs=203.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHH
Q ss_conf             39989999999999997679998777786899999999963332035679989987317620001012689999999973
Q gi|254780383|r   19 LYTPKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTI   98 (227)
Q Consensus        19 ~~~~~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~   98 (227)
                      |.+++++++|+++|.++||+++.+|+|+|||++||++||||||+|++|++++++|+++|||+++++.++.++++++|+++
T Consensus         1 M~~~~~~~~~~~~l~~~y~~~~~~l~~~dp~~vLVs~iLsqqT~~~~v~~~~~~l~~~~pt~~~la~~~~~e~~~~i~~~   80 (214)
T d1orna_           1 MLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSI   80 (214)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCCCCSCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTGGG
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHH
T ss_conf             98889999999999997799999888899799999999985191999988875221035754655205577765332103


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCHHH
Q ss_conf             00379999997523554442001000014567776432358888999987542100012104678776565407-88899
Q gi|254780383|r   99 GIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPG-KTPNK  177 (227)
Q Consensus        99 G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~~-~~~~~  177 (227)
                      |||++||++|++++++|+++|+|++|.++++|++|||||+|||++||+|+||+|+|+|||||+||++|+|+++. .++.+
T Consensus        81 g~y~~ka~~l~~~a~~i~~~~~g~vp~~~~~L~~LpGVG~kTA~~il~~a~~~~~~~VDtnv~RV~~Rlg~~~~~~~~~~  160 (214)
T d1orna_          81 GLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLE  160 (214)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             24108889999985547998399788889999718686632677899987058755555238889999887403551044


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf             99999621884226789999999966516489989472840331768519
Q gi|254780383|r  178 VEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ  227 (227)
Q Consensus       178 ~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~  227 (227)
                      ++..+++++|.+.|.++|++||+||+.||++++|+|+.|||++.|++|++
T Consensus       161 ~~~~l~~~~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~k  210 (214)
T d1orna_         161 VEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKK  210 (214)
T ss_dssp             HHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCC
T ss_conf             45556530765667899999999999877699999988979300854333


SCOP domain information

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]