HHSEARCH alignment of GI: 254780383 and SCOP domain: d2abka_

Alignment
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=435.60  Aligned_cols=207  Identities=48%  Similarity=0.867  Sum_probs=202.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHH
Q ss_conf             98999999999999767999877778689999999996333203567998998731762000101268999999997300
Q gi|254780383|r   21 TPKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGI  100 (227)
Q Consensus        21 ~~~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~  100 (227)
                      .+++..+|+.+|.+.||+++.||+++|||++||++||||||+|++|++++++|+++||||+++++++.++|+++|+|+||
T Consensus         2 ~~~~~~~i~~~l~~~~~~~~~~l~~~~p~~vli~~iLsqqT~~~~v~~~~~~l~~~~~t~~~la~a~~~~l~~~i~~~G~   81 (211)
T d2abka_           2 NKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGL   81 (211)
T ss_dssp             CHHHHHHHHHHHHHHCSSCCCSSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999999789999977789879999999995626399999999988874147278876557676777777544


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             37999999752355444200100001456777643235888899998754210001210467877656540788899999
Q gi|254780383|r  101 YRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGKTPNKVEQ  180 (227)
Q Consensus       101 ~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~~~~~~~~~~  180 (227)
                      |++||++|+++++.|+++|||.+|.++++|++|||||+|||++||+|+||+|+|+||+||+||++|+|+.+++++.+++.
T Consensus        82 y~~Ka~~l~~~a~~i~~~~~g~~p~~~~~L~~LpGVG~~TA~~Il~~a~~~p~~~vD~nv~Rv~~R~g~~~~~~~~~~~~  161 (211)
T d2abka_          82 YNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEE  161 (211)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             11578899999888998714860477999999986051789999999856803225679999999706675420467888


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf             99621884226789999999966516489989472840331768519
Q gi|254780383|r  181 SLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ  227 (227)
Q Consensus       181 ~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~  227 (227)
                      .+.+++|.+.|.++|++||+||+.||++++|+|+.|||++.|+||+|
T Consensus       162 ~~~~~~p~~~~~~~~~~l~~~G~~vC~~~~P~C~~Cpl~~~C~~~~k  208 (211)
T d2abka_         162 KLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEK  208 (211)
T ss_dssp             HHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88604860348999999999855552599989999979055898676


SCOP domain information

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]