HHSEARCH alignment of GI: 254780383 and SCOP domain: d2i1qa1

Alignment

Probab=90.74  E-value=0.095  Score=29.38  Aligned_cols=46  Identities=20%  Similarity=0.153  Sum_probs=31.9

Q ss_pred             HHHHHHHC-CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98998731-76200010126899999999730037999999752355444
Q gi|254780383|r   69 ATKHLFEI-ADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILIN  117 (227)
Q Consensus        69 ~~~~L~~~-ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~  117 (227)
                      ..++|++. |.|.++++.+++++|.++   -|+...+|..|++.++.+.+
T Consensus        11 ~a~~L~~~G~~tv~~l~~a~~eeL~~i---~Gi~~~~A~~i~~~ar~~~d   57 (60)
T d2i1qa1          11 TAEKLVEAGYIDFMKIATATVGELTDI---EGISEKAAAKMIMGARDLCD   57 (60)
T ss_dssp             HHHHHHHHTCCSHHHHHTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCHHHHHHCCHHHHHHC---CCCCHHHHHHHHHHHHHHCC
T ss_conf             999999836999999985999999877---89899999999999998718

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Methanococcus voltae [TaxId: 2188]