RPSBLAST alignment of GI: 254780383 and protein with PDBid: 1pu6
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Length = 218
Score = 142 bits (359), Expect = 6e-35
Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 28/190 (14%)
Query: 47 NHFTLIVAVLLSAQSTDVNVNKATKHLFEI-------ADTPQKMLAIGEKKLQNYIRTIG 99
F ++ +L+ + V K+ ++L +K+ I KL +R G
Sbjct: 29 LKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSG 88
Query: 100 IYRKKSENIISLSHILINEFDN----KIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIG 155
Y +K++ +I LS ++ +F + K T E L GIG++ A+ IL A +
Sbjct: 89 FYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMV 148
Query: 156 VDTHIFRISNRIGLAPGKTPNKVEQSLLRIIPPKHQYNA----------------HYWLV 199
VD + + ++G+ + ++++ + + H +V
Sbjct: 149 VDKYSYLFLKKLGIEI-EDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIV 207
Query: 200 LHGRYVCKAR 209
+ + +
Sbjct: 208 EFSKQKLELK 217