HHsearch results for GI: 254780384 and protein with PDBid: 1rm8_A
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=99.88 E-value=5.3e-23 Score=154.95 Aligned_cols=143 Identities=30% Similarity=0.446 Sum_probs=88.0
Q ss_pred CEEECCCEEEEECCCCCCCEEEEEEEEC-CHHHHHHHHHHHHHHHHHHCCEEEEECCC--------CCEEEECCCC----
Q ss_conf 8354043467505765675026887507-99999999999998865747568982478--------7168961585----
Q gi|254780384|r 20 DQYWSNYFIRYKPDVLTTHRLSFDITEL-NPNAQEVARWALGEWSKVVDLTFEETSIH--------SDIKFISSNN---- 86 (665)
Q Consensus 20 ~~~~~~~~~~~~~d~~~~~~~t~~it~l-~~~~~~~~R~Al~~ws~va~ItF~Ev~~~--------~d~~f~~~~~---- 86 (665)
|..|+...+++++..+.+ .+ .+.+++++|.||+.|++|++|+|+||... .++.+.....
T Consensus 1 G~kW~~~~iTy~~~~~~~--------~~~~~~~~~~i~~A~~~W~~~~~i~F~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (169)
T 1rm8_A 1 GQKWQHKHITYSIKNVTP--------KVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGD 72 (169)
T ss_dssp CCCCSSSEEEEEECCCCT--------TTCHHHHHHHHHHHHHHHHTTSSCEEEECCTTCCCSSSCCCSEEEEEESSCCSS
T ss_pred CCCCCCCEEEEEEECCCC--------CCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 987999868999814799--------999899999999999999863585089944655546664455787425466533
Q ss_pred -----------EEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----------35663146775312244335443336--66667346630032346551878888766676666777541
Q gi|254780384|r 87 -----------GYVCTPRYDSRYFMEINFDKADVWRY--GIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDY 153 (665)
Q Consensus 87 -----------g~a~~p~~~~~~~~~~~~~~~~~~~~--~~~~g~y~~~t~iHEIGHALGL~Hp~~~~~g~~~~~~~~~~ 153 (665)
+.+..|. ........++....+.. ......+.+.+++|||||||||+||.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~HEiGHaLGL~H~~~~------------- 137 (169)
T 1rm8_A 73 SSPFDGEGGFLAHAYFPG--PGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDP------------- 137 (169)
T ss_dssp SCCCCSSSSCCEEECCSC--STTTTCEEEETTSCEESSCCSSSSEEHHHHHHHHHHHHHTCCCCSCT-------------
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-------------
T ss_conf 455466765101233787--66455356502221233455787621767777777765167889999-------------
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHHHCCC
Q ss_conf 01420244675235677666655200021122148999986087
Q gi|254780384|r 154 ENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGA 197 (665)
Q Consensus 154 ~~d~~~~TvMSY~~~~~~~~~~~~~~~~tpm~~DI~Alq~lYGa 197 (665)
.+||+|..... .....+||..||+|||+|||+
T Consensus 138 ------~svM~~~~~~~------~~~~~~l~~~Di~~iq~LYGp 169 (169)
T 1rm8_A 138 ------TAIMAPFYQYM------ETDNFKLPNDDLQGIQKIYGP 169 (169)
T ss_dssp ------TSTTSSSCCCC------CCTTCCCCHHHHHHHHHHHCC
T ss_pred ------CCCCCCCCCCC------CCCCCCCCHHHHHHHHHHHCC
T ss_conf ------86254412578------788789899999999986194