PSIBLAST alignment of GI: 254780384 and protein with PDB id: 1gkd

>gi|21465444|pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex Length = 163
>gi|21465445|pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex Length = 163
 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 44/134 (32%), Gaps = 25/134 (18%)

Query: 20  DQYWSNYFIRYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEET-SIHSD 78
           D  W ++ I Y     +       I        +    A   WS V  LTF    S  +D
Sbjct: 8   DLKWHHHNITYWIQNYSEDLPRAVID-------DAFARAFALWSAVTPLTFTRVYSRDAD 60

Query: 79  IKFISSNN---------------GYVCTPRYDSRYFMEINFDKADVWRYGIGKGTILSHN 123
           I                       +   P        + +FD  ++W  G G+G  L   
Sbjct: 61  IVIQFGVAEHGDGYPFDGKDGLLAHAFPP--GPGIQGDAHFDDDELWSLGKGQGYSLFLV 118

Query: 124 ALHEIGHALGLMHP 137
           A H+ GHALGL H 
Sbjct: 119 AAHQFGHALGLDHS 132