PSIBLAST alignment of GI: 254780384 and protein with PDB id: 3ayk
>gi|5542534|pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase Complexed With Cgs-27023a, Nmr, Minimized Average Structure Length = 169
>gi|5542566|pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase Complexed With Cgs-27023a, Nmr, 30 Structures Length = 169
Score = 55.2 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 50/171 (29%), Gaps = 29/171 (16%)
Query: 22 YWSNYFIRYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSIH-SDIK 80
W + Y+ + T D+ A WS V LTF + S +DI
Sbjct: 8 RWEQTHLTYRIENYTPDLPRADVD-------HAIEKAFQLWSNVTPLTFTKVSEGQADIM 60
Query: 81 FIS---------------SNNGYVCTPRYDSRYFMEINFDKADVWRYGIGKGTILSHNAL 125
N + P + +FD+ + W + L A
Sbjct: 61 ISFVRGDHRDNSPFDGPGGNLAHAFQP--GPGIGGDAHFDEDERWTNNF-REYNLHRVAA 117
Query: 126 HEIGHALGLMHPGSYN---GGYPVYGVDNDYENDSFLTSVMSYFMPQDSMM 173
HE+GH+LGL H + D D Y Q+ +
Sbjct: 118 HELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQ 168