RPSBLAST alignment for GI: 254780384 and conserved domain: cd04278
>gnl|CDD|58578 cd04278, ZnMc_MMP, Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).. Length = 157
Score = 52.9 bits (127), Expect = 3e-07
Identities = 40/154 (25%), Positives = 51/154 (33%), Gaps = 41/154 (26%)
Query: 58 ALGEWSKVVDLTFEETSIHSD----IKFISSN----------NGYVCTPRYDSRYFMEIN 103
A WS V LTF E + + I F N G + + +I+
Sbjct: 30 AFRVWSDVTPLTFREVTSGQEADIRISFARGNHGDGYPFDGPGGTLAHAFFPGGIGGDIH 89
Query: 104 FDKADVWRYG-IGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDSFLTSV 162
FD + W G GT L A HEIGHALGL H + S+
Sbjct: 90 FDDDEQWTLGSDSGGTDLFSVAAHEIGHALGLGHSSDPD-------------------SI 130
Query: 163 MSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYG 196
M P F DI +Q +YG
Sbjct: 131 MY---PYYQGPVPKF----KLSQDDIRGIQALYG 157