RPSBLAST alignment of GI: 254780384 and protein with PDBid: 1l6j
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 Length = 425
Score = 42.7 bits (100), Expect = 2e-04
Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 30/147 (20%)
Query: 37 THRLSFDITELNPNAQE-VARWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTP 92
T+ + +L + A WS V LTF I+F + +G
Sbjct: 103 TYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHG--DGY 160
Query: 93 RYDSR-------YFME------INFDKADVWRYGIGKGTILSHN-----ALHEIGHALGL 134
+D + + +FD ++W G G A H G
Sbjct: 161 PFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACHFPFIFEGR 220
Query: 135 MH-----PGSYNGGYPVYGVDNDYEND 156
+ G G P +Y+ D
Sbjct: 221 SYSACTTDGRS-DGLPWCSTTANYDTD 246