RPSBLAST alignment of GI: 254780384 and protein with PDBid: 2pff

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 113/565 (20%), Positives = 202/565 (35%), Gaps = 160/565 (28%)

Query: 149  VDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKGSLGNNIYK 208
            V ND   +SF+ ++ ++    + ++ +S G   TP+               G+   ++  
Sbjct: 1071 VQNDILQESFINTMSAWV---NMLLISSSGPIKTPV---------------GACATSVES 1112

Query: 209  IEVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYE-KNMTIAQHTV 267
            +++       ++TI  SG      + ++GG   Y D   E     G +E  NM    +T+
Sbjct: 1113 VDIG------VETIL-SGK---ARICIVGG---YDDFQEE-----GSFEFGNMKATSNTL 1154

Query: 268  IESVVGSSGNDVV-IGNSANNVFFESSGNDV-----FDGSSGLDTFFY----YAPSYLYK 317
             E   G +  ++     +  N F E+ G  +      D +  +    Y     A +   K
Sbjct: 1155 EEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDK 1214

Query: 318  IYRFENAI---IVYDANEHKQDFLSDVERLRFADQCIDSVNVKQRSILEYTASYEDLIQV 374
            I R   A    I+  A EH          +++A   ++ +  ++R ++   A  +D ++ 
Sbjct: 1215 IGRSVPAPGKGILTTAREHHSS-------VKYASPNLN-MKYRKRQLVTREAQIKDWVE- 1265

Query: 375  IGQDVFESMK---------HFYEFGLSEGRDITFDSYLYLGSYDDLRNVFGSD------- 418
               +  E++K            EF L   R+I  ++   L +    +  +G+D       
Sbjct: 1266 ---NELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRA---AQQQWGNDFYKRDPR 1319

Query: 419  ----RGAAARHYIT---------HGVKEGRNPDAFKALEYIASHEDLINAFADAPDLVQV 465
                RGA A + +T         HG     N                 N  A   ++++ 
Sbjct: 1320 IAPLRGALATYGLTIDDLGVASFHGTSTKANDK---------------NESATINEMMK- 1363

Query: 466  GKDHFSNFGCEEGRFV--TFDSYLYLGSYDDLRNVFGSDRGAA-------ARHYITHGVK 516
                  + G  EG  V   F  +L            G  +GAA       A   +  G+ 
Sbjct: 1364 ------HLGRSEGNPVIGVFQKFLT-----------GHPKGAAGAWMMNGALQILNSGII 1406

Query: 517  EG-RNPD----AFKALEYIASHEDLINAFADAPDLVQAGKDHFSNFGYEEGRSITFNPD- 570
             G RN D      +  EY+      +       D V+A       FG + G++I  +PD 
Sbjct: 1407 PGNRNADNVDKILEQFEYVLYPSKTLKT-----DGVRAVSITSFGFGQKGGQAIVVHPDY 1461

Query: 571  LYLTSYDDLWNVFG---SDRSAAAQHYITHGMKEGRALGISGMQFKSVMNLSEK------ 621
            LY    +D +N +    S R  +A  +  +GM   + L +S         L E       
Sbjct: 1462 LYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYNK-LFVSKEHAPYTDELEEDVYLDPL 1520

Query: 622  ---SRDKADLSLSFDHKKVDLYTDY 643
               S+DK   SL+F+ K +     Y
Sbjct: 1521 ARVSKDKKSGSLTFNSKNIQSKDSY 1545