254780386
Type I secretion membrane fusion protein, HlyD
GeneID in NCBI database: | 8209371 | Locus tag: | CLIBASIA_01355 |
Protein GI in NCBI database: | 254780386 | Protein Accession: | YP_003064799.1 |
Gene range: | +(284258, 285580) | Protein Length: | 440aa |
Gene description: | Type I secretion membrane fusion protein, HlyD | ||
COG prediction: | [M] Membrane-fusion protein | ||
KEGG prediction: | type I secretion membrane fusion protein, HlyD; K02022 | ||
SEED prediction: | Alkaline protease secretion protein AprE | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 440 | Type I secretion membrane fusion protein, HlyD [Candida | |||
315122201 | 441 | Type I secretion membrane fusion protein, HlyD [Candida | 1 | 1e-174 | |
307544060 | 449 | mandelate racemase [Halomonas elongata DSM 2581] Length | 1 | 2e-17 | |
152991144 | 428 | type I secretion system membrane fusion protein [Nitrat | 1 | 2e-16 | |
87198270 | 446 | Type I secretion membrane fusion protein, HlyD [Novosph | 1 | 3e-15 | |
300113968 | 455 | HlyD family type I secretion membrane fusion protein [N | 1 | 1e-14 | |
326388175 | 449 | Type I secretion membrane fusion protein, HlyD [Novosph | 1 | 5e-14 | |
104783706 | 446 | heme acquisition transporter, membrane fusion protein H | 1 | 9e-14 | |
330445560 | 439 | type I secretion membrane fusion, HlyD family protein [ | 1 | 1e-13 | |
190890292 | 481 | protein secretion protein, HlyD family [Rhizobium etli | 1 | 7e-13 | |
327191612 | 481 | putative protein secretion protein, HlyD family [Rhizob | 1 | 8e-13 |
>gi|315122201|ref|YP_004062690.1| Type I secretion membrane fusion protein, HlyD [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 441 | Back alignment and organism information |
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Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust. Identities = 306/441 (69%), Positives = 363/441 (82%), Gaps = 1/441 (0%) Query: 1 MHHFMWKNLKRNHPASLKRMTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIK 60 M++ WKN K++H +L + +LS IGI+GLI WSILLPIEI VSS GEIL ++++VEIK Sbjct: 1 MYNIFWKNFKKHHLTTLAKTIILSTIGIVGLIIWSILLPIEIRVSSLGEILYDNDIVEIK 60 Query: 61 SPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDFL 120 SPFSGII KFQV NG+Q+LQG PLLTFED ET DL++LKK SI +L+C IDT SAL+FL Sbjct: 61 SPFSGIINKFQVNNGAQVLQGDPLLTFEDTETNDLLNLKKSSITDLKCRIDTANSALNFL 120 Query: 121 NNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLD 180 N+KYDV+++AF+ R+EQLLDFL Y TCSKVFNY IS +YRSLK+KLTR ++Y N LD Sbjct: 121 NSKYDVIKRAFDIRDEQLLDFLRNYPPTCSKVFNYEISKLYRSLKLKLTRTHNLYSNYLD 180 Query: 181 LENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNM 240 LE+K SL LL SH+KDLT+ KNLF+ N VS+N+LNQQER+V+KS LEL +++ QK M Sbjct: 181 LEDKISLSNMLLLSHKKDLTITKNLFKDNVVSKNELNQQERVVHKSALELTTDLNAQKAM 240 Query: 241 LRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTI 300 LRHINELYDEAN+EFANYLK+ISRDL+ NQRT DE+SK TILEK Q TILSPI GTI Sbjct: 241 LRHINELYDEANVEFANYLKDISRDLDHNQRTLIDEISKATILEKKISQHTILSPIMGTI 300 Query: 301 VYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIRE 360 VYNQSFSSSNY Q+SQ LMKIVP LT+IRAKV P+QIQ VK G ATVRFPHY DIRE Sbjct: 301 VYNQSFSSSNYIQESQLLMKIVPRCDLTHIRAKVAPQQIQSVKNGQIATVRFPHYPDIRE 360 Query: 361 KKFKAIIEKIDPIISQQDNN-LQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKN 419 KKFKAIIE I+PIISQ++N+ QTQ YYEVILKI D A+ DN IELRNG+ AE+LFTA+ Sbjct: 361 KKFKAIIETINPIISQRNNDSSQTQNYYEVILKIIDPAYFDNKIELRNGYLAEILFTAEY 420 Query: 420 TTLAQEIIHPITDNWPKIFER 440 TTLA+EII PIT+NWPKIFER Sbjct: 421 TTLAKEIIRPITNNWPKIFER 441 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|307544060|ref|YP_003896539.1| mandelate racemase [Halomonas elongata DSM 2581] Length = 449 | Back alignment and organism information |
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>gi|152991144|ref|YP_001356866.1| type I secretion system membrane fusion protein [Nitratiruptor sp. SB155-2] Length = 428 | Back alignment and organism information |
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>gi|87198270|ref|YP_495527.1| Type I secretion membrane fusion protein, HlyD [Novosphingobium aromaticivorans DSM 12444] Length = 446 | Back alignment and organism information |
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>gi|300113968|ref|YP_003760543.1| HlyD family type I secretion membrane fusion protein [Nitrosococcus watsonii C-113] Length = 455 | Back alignment and organism information |
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>gi|326388175|ref|ZP_08209778.1| Type I secretion membrane fusion protein, HlyD [Novosphingobium nitrogenifigens DSM 19370] Length = 449 | Back alignment and organism information |
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>gi|104783706|ref|YP_610204.1| heme acquisition transporter, membrane fusion protein HasE [Pseudomonas entomophila L48] Length = 446 | Back alignment and organism information |
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>gi|330445560|ref|ZP_08309212.1| type I secretion membrane fusion, HlyD family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 439 | Back alignment and organism information |
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>gi|190890292|ref|YP_001976834.1| protein secretion protein, HlyD family [Rhizobium etli CIAT 652] Length = 481 | Back alignment and organism information |
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>gi|327191612|gb|EGE58624.1| putative protein secretion protein, HlyD family [Rhizobium etli CNPAF512] Length = 481 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 440 | Type I secretion membrane fusion protein, HlyD [Candida | ||
TIGR01843 | 423 | TIGR01843, type_I_hlyD, type I secretion membrane fusio | 2e-25 | |
TIGR01730 | 322 | TIGR01730, RND_mfp, RND family efflux transporter, MFP | 5e-05 | |
COG1566 | 352 | COG1566, EmrA, Multidrug resistance efflux pump [Defens | 8e-07 | |
TIGR03794 | 421 | TIGR03794, NHPM_micro_HlyD, NHPM bacteriocin system sec | 2e-04 | |
pfam00529 | 304 | pfam00529, HlyD, HlyD family secretion protein | 3e-04 | |
TIGR02971 | 327 | TIGR02971, heterocyst_DevB, ABC exporter membrane fusio | 0.001 |
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
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>gnl|CDD|162505 TIGR01730, RND_mfp, RND family efflux transporter, MFP subunit | Back alignment and domain information |
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>gnl|CDD|31754 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms] | Back alignment and domain information |
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>gnl|CDD|163506 TIGR03794, NHPM_micro_HlyD, NHPM bacteriocin system secretion protein | Back alignment and domain information |
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>gnl|CDD|109580 pfam00529, HlyD, HlyD family secretion protein | Back alignment and domain information |
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>gnl|CDD|132016 TIGR02971, heterocyst_DevB, ABC exporter membrane fusion protein, DevB family | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 440 | Type I secretion membrane fusion protein, HlyD [Candida | ||
TIGR01843 | 434 | type_I_hlyD type I secretion membrane fusion protein, H | 100.0 | |
PRK03598 | 331 | hypothetical protein; Provisional | 100.0 | |
TIGR01000 | 476 | bacteriocin_acc bacteriocin secretion accessory protein | 100.0 | |
PRK10476 | 348 | multidrug resistance protein MdtN; Provisional | 100.0 | |
TIGR00998 | 379 | 8a0101 efflux pump membrane protein; InterPro: IPR00569 | 100.0 | |
PRK10559 | 310 | p-hydroxybenzoic acid efflux subunit AaeA; Provisional | 100.0 | |
PRK11556 | 415 | multidrug efflux system subunit MdtA; Provisional | 99.98 | |
PRK11578 | 347 | macrolide transporter subunit MacA; Provisional | 99.97 | |
COG1566 | 352 | EmrA Multidrug resistance efflux pump [Defense mechanis | 100.0 | |
PRK09859 | 385 | multidrug efflux system protein MdtE; Provisional | 99.95 | |
PRK09578 | 385 | periplasmic multidrug efflux lipoprotein precursor; Rev | 99.95 | |
TIGR02971 | 363 | heterocyst_DevB ABC exporter membrane fusion protein, D | 99.95 | |
TIGR01730 | 333 | RND_mfp efflux transporter, RND family, MFP subunit; In | 99.38 | |
PRK09783 | 407 | copper/silver efflux system membrane fusion protein Cus | 99.93 | |
TIGR00999 | 284 | 8a0102 Membrane Fusion Protein cluster 2 protein; Inter | 99.75 | |
pfam00529 | 304 | HlyD HlyD family secretion protein. | 95.92 | |
COG0845 | 372 | AcrA Membrane-fusion protein [Cell envelope biogenesis, | 95.1 | |
TIGR00717 | 534 | rpsA ribosomal protein S1; InterPro: IPR000110 Ribosome | 90.04 | |
COG0845 | 372 | AcrA Membrane-fusion protein [Cell envelope biogenesis, | 99.74 | |
pfam00529 | 304 | HlyD HlyD family secretion protein. | 99.59 | |
PRK07051 | 80 | hypothetical protein; Validated | 97.26 | |
PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier protein | 97.09 | |
pfam06898 | 383 | YqfD Putative stage IV sporulation protein YqfD. This f | 96.93 | |
cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carboxyl | 96.88 | |
PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl carrier | 96.86 | |
cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are pre | 96.85 | |
PRK05641 | 148 | putative acetyl-CoA carboxylase biotin carboxyl carrier | 96.83 | |
COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabolism] | 96.83 | |
KOG0559 | 457 | consensus | 96.79 | |
pfam00364 | 73 | Biotin_lipoyl Biotin-requiring enzyme. This family cove | 96.51 | |
PTZ00144 | 430 | dihydrolipoamide succinyltransferase; Provisional | 96.43 | |
PRK06549 | 132 | acetyl-CoA carboxylase biotin carboxyl carrier protein | 96.42 | |
TIGR02876 | 406 | spore_yqfD sporulation protein YqfD; InterPro: IPR01069 | 96.28 | |
cd06849 | 74 | lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltr | 96.25 | |
PTZ00144 | 430 | dihydrolipoamide succinyltransferase; Provisional | 96.18 | |
PRK05704 | 406 | dihydrolipoamide succinyltransferase; Validated | 96.18 | |
TIGR01347 | 435 | sucB 2-oxoglutarate dehydrogenase, E2 component, dihydr | 96.17 | |
PRK11855 | 549 | dihydrolipoamide acetyltransferase; Reviewed | 96.05 | |
COG0508 | 404 | AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dih | 96.03 | |
PRK11856 | 324 | branched-chain alpha-keto acid dehydrogenase subunit E2 | 95.99 | |
PRK11854 | 630 | aceF dihydrolipoamide acetyltransferase; Validated | 95.58 | |
TIGR01348 | 655 | PDHac_trf_long pyruvate dehydrogenase complex dihydroli | 95.52 | |
PRK09783 | 407 | copper/silver efflux system membrane fusion protein Cus | 95.49 | |
PRK10559 | 310 | p-hydroxybenzoic acid efflux subunit AaeA; Provisional | 95.1 | |
PRK11854 | 630 | aceF dihydrolipoamide acetyltransferase; Validated | 95.07 | |
PRK11855 | 549 | dihydrolipoamide acetyltransferase; Reviewed | 94.96 | |
PRK03598 | 331 | hypothetical protein; Provisional | 94.63 | |
TIGR00830 | 129 | PTBA PTS system, glucose subfamily, IIA component; Inte | 93.97 | |
PRK11637 | 404 | hypothetical protein; Provisional | 97.53 | |
COG0539 | 541 | RpsA Ribosomal protein S1 [Translation, ribosomal struc | 90.61 | |
PRK10476 | 348 | multidrug resistance protein MdtN; Provisional | 97.51 | |
TIGR00998 | 379 | 8a0101 efflux pump membrane protein; InterPro: IPR00569 | 95.11 | |
TIGR01843 | 434 | type_I_hlyD type I secretion membrane fusion protein, H | 97.32 | |
PRK05641 | 148 | putative acetyl-CoA carboxylase biotin carboxyl carrier | 97.0 | |
PRK12999 | 1147 | pyruvate carboxylase; Reviewed | 96.99 | |
PRK09282 | 580 | pyruvate carboxylase subunit B; Validated | 96.98 | |
PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier protein | 96.96 | |
PRK06549 | 132 | acetyl-CoA carboxylase biotin carboxyl carrier protein | 96.88 | |
COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabolism] | 96.86 | |
PRK09824 | 625 | beta-glucoside-specific PTS system components IIABC; Pr | 96.84 | |
COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and chro | 96.83 | |
PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl carrier | 96.8 | |
cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carboxyl | 96.6 | |
PRK06302 | 155 | acetyl-CoA carboxylase biotin carboxyl carrier protein | 96.55 | |
TIGR02712 | 1226 | urea_carbox urea carboxylase; InterPro: IPR014084 Membe | 96.48 | |
TIGR01235 | 1169 | pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 | 96.15 | |
COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid | 96.07 | |
PRK10255 | 648 | N-acetyl glucosamine specific PTS system components IIA | 96.0 | |
TIGR01108 | 616 | oadA oxaloacetate decarboxylase alpha subunit; InterPro | 95.98 | |
COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and conver | 95.95 | |
PRK09439 | 169 | glucose-specific PTS system component; Provisional | 95.86 | |
TIGR01995 | 660 | PTS-II-ABC-beta PTS system, beta-glucoside-specific IIA | 95.12 | |
COG3608 | 331 | Predicted deacylase [General function prediction only] | 95.03 | |
KOG0238 | 670 | consensus | 94.71 | |
KOG0369 | 1176 | consensus | 94.66 | |
pfam00358 | 133 | PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphot | 94.56 | |
cd06250 | 359 | M14_PaAOTO_like An uncharacterized subgroup of the Succ | 94.34 | |
PRK07051 | 80 | hypothetical protein; Validated | 93.64 | |
TIGR02712 | 1226 | urea_carbox urea carboxylase; InterPro: IPR014084 Membe | 92.85 | |
cd06252 | 316 | M14_ASTE_ASPA_like_2 A functionally uncharacterized sub | 92.41 | |
cd06254 | 288 | M14_ASTE_ASPA_like_4 A functionally uncharacterized sub | 92.14 | |
cd06253 | 298 | M14_ASTE_ASPA_like_3 A functionally uncharacterized sub | 91.95 | |
cd06255 | 293 | M14_ASTE_ASPA_like_5 A functionally uncharacterized sub | 91.62 | |
cd06251 | 287 | M14_ASTE_ASPA_like_1 A functionally uncharacterized sub | 90.97 | |
TIGR03007 | 510 | pepcterm_ChnLen polysaccharide chain length determinant | 96.69 | |
PRK09510 | 402 | tolA cell envelope integrity inner membrane protein Tol | 94.98 | |
TIGR02169 | 1202 | SMC_prok_A chromosome segregation protein SMC; InterPro | 96.07 | |
PRK11637 | 404 | hypothetical protein; Provisional | 94.95 | |
TIGR02063 | 755 | RNase_R ribonuclease R; InterPro: IPR011805 This family | 91.58 | |
TIGR01348 | 655 | PDHac_trf_long pyruvate dehydrogenase complex dihydroli | 95.45 | |
cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are pre | 95.41 | |
PRK05704 | 406 | dihydrolipoamide succinyltransferase; Validated | 95.29 | |
COG0508 | 404 | AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dih | 95.14 | |
cd06849 | 74 | lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltr | 94.91 | |
COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and conver | 94.81 | |
PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 94.81 | |
cd00210 | 124 | PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specif | 94.7 | |
TIGR01349 | 584 | PDHac_trf_mito pyruvate dehydrogenase complex dihydroli | 94.62 | |
PRK11856 | 324 | branched-chain alpha-keto acid dehydrogenase subunit E2 | 94.55 | |
pfam00364 | 73 | Biotin_lipoyl Biotin-requiring enzyme. This family cove | 92.18 | |
pfam05896 | 257 | NQRA Na(+)-translocating NADH-quinone reductase subunit | 91.83 | |
COG2190 | 156 | NagE Phosphotransferase system IIA components [Carbohyd | 91.6 | |
PRK05352 | 448 | Na(+)-translocating NADH-quinone reductase subunit A; P | 91.54 | |
TIGR01347 | 435 | sucB 2-oxoglutarate dehydrogenase, E2 component, dihydr | 90.37 | |
TIGR02168 | 1191 | SMC_prok_B chromosome segregation protein SMC; InterPro | 94.13 | |
KOG0161 | 1930 | consensus | 91.01 | |
COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid | 94.07 | |
pfam07888 | 546 | CALCOCO1 Calcium binding and coiled-coil domain (CALCOC | 90.49 | |
PRK09039 | 343 | hypothetical protein; Validated | 94.05 | |
pfam09726 | 680 | Macoilin Transmembrane protein. This entry is a highly | 91.55 | |
PRK09039 | 343 | hypothetical protein; Validated | 90.26 | |
COG1566 | 352 | EmrA Multidrug resistance efflux pump [Defense mechanis | 91.98 | |
KOG1029 | 1118 | consensus | 91.24 | |
PRK11642 | 813 | exoribonuclease R; Provisional | 90.98 | |
pfam01551 | 96 | Peptidase_M23 Peptidase family M23. Members of this fam | 90.02 |
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family; InterPro: IPR010129 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
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>PRK03598 hypothetical protein; Provisional | Back alignment and domain information |
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>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein; InterPro: IPR005696 Bacteriocins are antibacterial proteinaceous compounds produced by bacteria | Back alignment and domain information |
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>PRK10476 multidrug resistance protein MdtN; Provisional | Back alignment and domain information |
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>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds | Back alignment and domain information |
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>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional | Back alignment and domain information |
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>PRK11556 multidrug efflux system subunit MdtA; Provisional | Back alignment and domain information |
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>PRK11578 macrolide transporter subunit MacA; Provisional | Back alignment and domain information |
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>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms] | Back alignment and domain information |
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>PRK09859 multidrug efflux system protein MdtE; Provisional | Back alignment and domain information |
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>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed | Back alignment and domain information |
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>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family; InterPro: IPR014315 Members of this protein are found mostly in the Cyanobacteria, but also in the Planctomycetes | Back alignment and domain information |
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>TIGR01730 RND_mfp efflux transporter, RND family, MFP subunit; InterPro: IPR006143 Gram-negative bacteria produce a number of proteins which are secreted into the growth medium by a mechanism that does not require a cleaved N-terminal signal sequence | Back alignment and domain information |
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>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional | Back alignment and domain information |
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>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 protein; InterPro: IPR005695 Gram-negative bacteria have evolved transport complexes that export macromolecules and toxic substances such as heavy metals across the two membranes of the cell envelope in a single energy coupled step | Back alignment and domain information |
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>pfam00529 HlyD HlyD family secretion protein | Back alignment and domain information |
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>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>TIGR00717 rpsA ribosomal protein S1; InterPro: IPR000110 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>pfam00529 HlyD HlyD family secretion protein | Back alignment and domain information |
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>PRK07051 hypothetical protein; Validated | Back alignment and domain information |
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>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
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>pfam06898 YqfD Putative stage IV sporulation protein YqfD | Back alignment and domain information |
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>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
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>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
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>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
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>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
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>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
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>KOG0559 consensus | Back alignment and domain information |
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>pfam00364 Biotin_lipoyl Biotin-requiring enzyme | Back alignment and domain information |
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>PTZ00144 dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
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>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
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>TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins | Back alignment and domain information |
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>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
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>PTZ00144 dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
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>PRK05704 dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
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>TIGR01347 sucB 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR006255 These sequences describe the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
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>PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
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>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
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>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
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>PRK11854 aceF dihydrolipoamide acetyltransferase; Validated | Back alignment and domain information |
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>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256 This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees | Back alignment and domain information |
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>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional | Back alignment and domain information |
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>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional | Back alignment and domain information |
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>PRK11854 aceF dihydrolipoamide acetyltransferase; Validated | Back alignment and domain information |
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>PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
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>PRK03598 hypothetical protein; Provisional | Back alignment and domain information |
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>TIGR00830 PTBA PTS system, glucose subfamily, IIA component; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria | Back alignment and domain information |
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>PRK11637 hypothetical protein; Provisional | Back alignment and domain information |
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>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK10476 multidrug resistance protein MdtN; Provisional | Back alignment and domain information |
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>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds | Back alignment and domain information |
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>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family; InterPro: IPR010129 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
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>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
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>PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
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>PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
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>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
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>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
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>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
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>PRK09824 beta-glucoside-specific PTS system components IIABC; Provisional | Back alignment and domain information |
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>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
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>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
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>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
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>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
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>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
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>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis | Back alignment and domain information |
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>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
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>PRK10255 N-acetyl glucosamine specific PTS system components IIABC; Provisional | Back alignment and domain information |
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>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea | Back alignment and domain information |
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>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
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>PRK09439 glucose-specific PTS system component; Provisional | Back alignment and domain information |
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>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component; InterPro: IPR011297 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria | Back alignment and domain information |
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>COG3608 Predicted deacylase [General function prediction only] | Back alignment and domain information |
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>KOG0238 consensus | Back alignment and domain information |
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>KOG0369 consensus | Back alignment and domain information |
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>pfam00358 PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 | Back alignment and domain information |
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>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases | Back alignment and domain information |
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>PRK07051 hypothetical protein; Validated | Back alignment and domain information |
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>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
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>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
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>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
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>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
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>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
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>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
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>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; InterPro: IPR014345 Members of this entry belong to the family of polysaccharide chain length determinant proteins | Back alignment and domain information |
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>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
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>TIGR02169 SMC_prok_A chromosome segregation protein SMC; InterPro: IPR011891 The SMC (structural maintenance of chromosomes) family of proteins, exist in virtually all organisms including both bacteria and archaea | Back alignment and domain information |
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>PRK11637 hypothetical protein; Provisional | Back alignment and domain information |
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>TIGR02063 RNase_R ribonuclease R; InterPro: IPR011805 This family consists of an exoribonuclease, ribonuclease R, also called VacB | Back alignment and domain information |
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>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256 This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees | Back alignment and domain information |
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>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
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>PRK05704 dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
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>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
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>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
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>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
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>PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
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>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit | Back alignment and domain information |
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>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257 This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex | Back alignment and domain information |
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>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
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>pfam00364 Biotin_lipoyl Biotin-requiring enzyme | Back alignment and domain information |
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>pfam05896 NQRA Na(+)-translocating NADH-quinone reductase subunit A (NQRA) | Back alignment and domain information |
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>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism] | Back alignment and domain information |
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>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional | Back alignment and domain information |
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>TIGR01347 sucB 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR006255 These sequences describe the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
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>TIGR02168 SMC_prok_B chromosome segregation protein SMC; InterPro: IPR011890 The SMC (structural maintenance of chromosomes) family of proteins, exist in virtually all organisms including both bacteria and archaea | Back alignment and domain information |
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>KOG0161 consensus | Back alignment and domain information |
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>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
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>pfam07888 CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
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>PRK09039 hypothetical protein; Validated | Back alignment and domain information |
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>pfam09726 Macoilin Transmembrane protein | Back alignment and domain information |
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>PRK09039 hypothetical protein; Validated | Back alignment and domain information |
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>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms] | Back alignment and domain information |
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>KOG1029 consensus | Back alignment and domain information |
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>PRK11642 exoribonuclease R; Provisional | Back alignment and domain information |
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>pfam01551 Peptidase_M23 Peptidase family M23 | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 440 | Type I secretion membrane fusion protein, HlyD [Candida | ||
3lnn_A | 359 | Crystal Structure Of Zneb From Cupriavidus Metallid | 1e-06 | |
3fpp_A | 341 | Crystal Structure Of E.Coli Maca Length = 341 | 4e-04 |
>gi|299856759|pdb|3LNN|A Chain A, Crystal Structure Of Zneb From Cupriavidus Metallidurans Length = 359 | Back alignment and structure |
Score = 59.0 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 15/104 (14%) Query: 311 YAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKI 370 Y + + V ++ A K + HV G +ATV+F Y D + + + Sbjct: 191 YWNDTTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDDPQ----PGKVRYV 246 Query: 371 DPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVL 414 I+ + + + + + LR G A+ Sbjct: 247 GQILDADTRTTKVRMVF-----------DNPDGRLRPGMFAQAT 279 |
>gi|228312097|pdb|3FPP|A Chain A, Crystal Structure Of E.Coli Maca Length = 341 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 440 | Type I secretion membrane fusion protein, HlyD [Candida | ||
3lnn_A | 359 | Membrane fusion protein (MFP-RND) heavy metal CAT trico | 3e-05 | |
3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric assem | 2e-04 | |
1vf7_A | 369 | Multidrug resistance protein MEXA; alpha hairpin, beta | 3e-04 | |
3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein compl | 6e-04 | |
2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, lipo | 7e-04 |
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans} Length = 359 | Back alignment and structure |
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Score = 45.2 bits (106), Expect = 3e-05 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 39 PIEISVSSSGEI-LNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLID 97 + + I + +V++ P +G I + G ++ G L T I++ DL Sbjct: 39 TVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFT---IDSADLAQ 95 Query: 98 LK 99 Sbjct: 96 AN 97 |
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Length = 341 | Back alignment and structure |
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>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Length = 369 | Back alignment and structure |
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>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 | Back alignment and structure |
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>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} Length = 277 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 440 | Type I secretion membrane fusion protein, HlyD [Candida | ||
3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric assem | 99.92 | |
2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, lipo | 99.91 | |
3h9i_A | 407 | Cation efflux system protein CUSB; three-helix bundle, | 99.92 | |
3lnn_A | 359 | Membrane fusion protein (MFP-RND) heavy metal CAT trico | 99.92 | |
1vf7_A | 369 | Multidrug resistance protein MEXA; alpha hairpin, beta | 99.68 | |
1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, f | 97.24 | |
1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structure, b | 97.21 | |
2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; biotin, do | 97.14 | |
1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehydroge | 97.08 | |
1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structure, b | 97.05 | |
1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component of py | 96.99 | |
1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase compon | 96.79 | |
1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta sheet, | 96.78 | |
2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondrial; l | 96.75 | |
1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, pyru | 96.68 | |
2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; biotin-r | 96.65 | |
2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, trans | 96.27 | |
2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, | 96.19 | |
1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, | 96.06 | |
3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase component | 95.54 | |
1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase component | 95.48 | |
2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic acid | 95.42 | |
2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase component | 95.37 | |
2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 93.72 | |
3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase component | 93.48 | |
3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase component | 93.18 | |
2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase component | 93.03 | |
1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehyd | 91.29 | |
3h9i_A | 407 | Cation efflux system protein CUSB; three-helix bundle, | 90.15 | |
3lnn_A | 359 | Membrane fusion protein (MFP-RND) heavy metal CAT trico | 90.03 | |
2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 99.4 | |
1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta sheet, | 97.07 | |
3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein compl | 97.03 | |
3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; | 96.94 | |
2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, | 96.94 | |
2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; biotin, do | 96.91 | |
2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; biotin-r | 96.89 | |
2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, trans | 96.8 | |
2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondrial; l | 96.68 | |
3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-bi | 96.44 | |
2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi-funct | 96.42 | |
2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase component | 96.4 | |
1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, f | 95.68 | |
1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component of py | 95.57 | |
1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehyd | 94.74 | |
2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic acid | 94.64 | |
1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase component | 94.6 | |
1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase compon | 94.11 | |
1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehydroge | 93.87 | |
1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, | 93.55 | |
1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, pyru | 92.85 | |
1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, myosi | 97.35 | |
2b5u_A | 551 | Colicin E3; high resolution colicin E3, ribosome inacti | 97.02 | |
3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; | 96.41 | |
2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi-funct | 96.35 | |
3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-bi | 96.26 | |
2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, lipo | 93.08 | |
2gpr_A | 154 | Glucose-permease IIA component; phosphotransferase, enz | 95.69 | |
1f3z_A | 161 | EIIA-GLC, glucose-specific phosphocarrier; phosphotrans | 95.38 | |
1ax3_A | 162 | Iiaglc, glucose permease IIA domain; phosphotransferase | 94.22 | |
3c9i_A | 242 | Tail needle protein GP26; xenon, coiled-coil, protein f | 90.41 | |
3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coil, be | 94.94 | |
3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coil, be | 94.88 | |
3iox_A | 497 | AGI/II, PA; alpha helix, PPII helix, supersandwich fold | 94.46 | |
1deq_A | 390 | Fibrinogen (alpha chain); coiled-coil, blood clotting; | 94.01 | |
1m1j_B | 464 | Fibrinogen beta chain; coiled coils, disulfide rings, f | 93.73 | |
1m1j_B | 464 | Fibrinogen beta chain; coiled coils, disulfide rings, f | 93.27 | |
3iox_A | 497 | AGI/II, PA; alpha helix, PPII helix, supersandwich fold | 93.08 | |
2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase component | 94.77 | |
3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase component | 94.71 | |
1zy8_K | 229 | Pyruvate dehydrogenase protein X component, mitochondri | 93.8 | |
1m1j_A | 491 | Fibrinogen alpha subunit; coiled coils, disulfide rings | 94.64 | |
1m1j_A | 491 | Fibrinogen alpha subunit; coiled coils, disulfide rings | 92.72 | |
2i1j_A | 575 | Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin | 92.55 |
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} | Back alignment and structure |
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Probab=99.92 E-value=2.7e-24 Score=178.97 Aligned_cols=259 Identities=15% Similarity=0.236 Sum_probs=164.2 Q ss_pred EEEEEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 06712589997999953873898468886899998578989336978999964899888999874343323321001233 Q gi|254780386|r 37 LLPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSA 116 (440) Q Consensus 37 ~~~~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~~~~~~l~~l~~~l~~~~~~ 116 (440) -..+..++.++|+|.|.... .|.++.+|+|.+++|++||.|++||+|++||+.+....+.+.+..+..++++++..+.. T Consensus 13 ~g~i~~tv~~~G~v~~~~~~-~v~a~~~G~V~~v~v~~G~~V~~G~~L~~id~~~~~~~~~~~~a~~~~~~~~l~~a~~~ 91 (341) T 3fpp_A 13 PGDLQQSVLATGKLDALRKV-DVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAE 91 (341) T ss_dssp CCCCCCEEEEEEEEEESSEE-ECCCSSCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEEEEEEEEEEEEEEEEEEE-EEECCCCEEEEEEECCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98724999999999980899-99844778999999899199889998999881999999999999898876548999878 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHH Q ss_conf 33222114555422356888877655467886543336554200112221122100223210112232222221023333 Q gi|254780386|r 117 LDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQ 196 (440) Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 196 (440) ++. .+ T Consensus 92 l~~---------------------------------------------------------------------------a~ 96 (341) T 3fpp_A 92 LKL---------------------------------------------------------------------------AR 96 (341) T ss_dssp HHH---------------------------------------------------------------------------HT T ss_pred HHH---------------------------------------------------------------------------HH T ss_conf 887---------------------------------------------------------------------------44 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 22210122222211100001110024666531012233222222222221000122333211233222122222222122 Q gi|254780386|r 197 KDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADE 276 (440) Q Consensus 197 ~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~ 276 (440) .++...+.+...+..++.++.............+.. ....+... T Consensus 97 ~~~~r~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~l~~~ 140 (341) T 3fpp_A 97 VTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGT------------------------------------IDAQIKRN 140 (341) T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHH------------------------------------HHHHHHHT T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHH------------------------------------HHHHHHHH T ss_conf 332012344203765266665554321023567888------------------------------------77799876 Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCC---CCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCEEEEEE Q ss_conf 23322122222123455541168731212012221244---455421033556504775326223110158983179998 Q gi|254780386|r 277 MSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQ---SQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFP 353 (440) Q Consensus 277 ~~~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~---G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~i~~~ 353 (440) ..........+.+..+.||++|.+..... ..|..+.+ +.++++|. +.+.+++.+.+++.++.++++|+.|.++++ T Consensus 141 ~~~~~~~~~~~~~~~i~a~~~~~~~~~~~-~~G~~v~~~~~~~~~~~i~-~~~~~~~~~~v~e~~~~~v~~g~~v~i~~~ 218 (341) T 3fpp_A 141 QASLDTAKTNLDYTRIVAPMAGEVTQITT-LQGQTVIAAQQAPNILTLA-DMSAMLVKAQVSEADVIHLKPGQKAWFTVL 218 (341) T ss_dssp HHHHTTTTTTTTSSEEECSSSEEEEEESS-CTTCEECCTTSCCCCEEEE-CCSEEEEEEECCGGGSTTCCTTCCCEECCS T ss_pred HHHHHHHHHCCCCEEEECCCCCEEEEEEE-CCCCEEECCCCCCEEEEEE-CCCCEEEEEEECHHHHHHHHCCCEEEEEEE T ss_conf 66555555113550684686762778982-5798883378761478992-388537998658999997314753789870 Q ss_pred ECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECEEE Q ss_conf 12887544399999997133444677765511899999935011256785152377569999922054 Q gi|254780386|r 354 HYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNTT 421 (440) Q Consensus 354 a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~~~ 421 (440) .++.. .+.|+|..|+|.+..... ...|.+.+.++. .+..++|||++++.|.++.+. T Consensus 219 ~~~~~---~~~g~v~~i~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~G~~v~v~i~~~~~~ 274 (341) T 3fpp_A 219 GDQLT---RYEGQIKDVLPTPEKVND----AIFYYARFEVPN-----PNGLLRLDMTAQVHIQLTDVK 274 (341) T ss_dssp SSSSS---CBCCCEEEECSSCCBSSS----CBCCEEEEEEEC-----SSSCCCTTCEEEEEEESCCCC T ss_pred CCCEE---EEEEEEEEEECCEEECCC----EEEEEEEEEECC-----CCCCCCCCEEEEEEEEECCCC T ss_conf 22101---211599999632230576----199999997259-----765555533899999935758 |
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} | Back alignment and structure |
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>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans} | Back alignment and structure |
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>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A | Back alignment and structure |
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>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A | Back alignment and structure |
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>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* | Back alignment and structure |
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>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A | Back alignment and structure |
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>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A | Back alignment and structure |
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>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* | Back alignment and structure |
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>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A | Back alignment and structure |
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>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A | Back alignment and structure |
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>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A | Back alignment and structure |
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>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens} | Back alignment and structure |
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>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
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>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
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>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} | Back alignment and structure |
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>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 | Back alignment and structure |
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>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* | Back alignment and structure |
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>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A | Back alignment and structure |
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>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} | Back alignment and structure |
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>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* | Back alignment and structure |
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>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A | Back alignment and structure |
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>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A | Back alignment and structure |
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>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} | Back alignment and structure |
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>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
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>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans} | Back alignment and structure |
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>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* | Back alignment and structure |
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>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A | Back alignment and structure |
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>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
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>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* | Back alignment and structure |
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>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} | Back alignment and structure |
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>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A | Back alignment and structure |
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>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
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>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens} | Back alignment and structure |
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>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
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>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} | Back alignment and structure |
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>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} | Back alignment and structure |
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>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A | Back alignment and structure |
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>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A | Back alignment and structure |
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>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
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>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A | Back alignment and structure |
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>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A | Back alignment and structure |
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>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A | Back alignment and structure |
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>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 | Back alignment and structure |
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>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
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>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3dtp_B 3dtp_A | Back alignment and structure |
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>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y* | Back alignment and structure |
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>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* | Back alignment and structure |
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>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} | Back alignment and structure |
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>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
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>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} | Back alignment and structure |
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>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 | Back alignment and structure |
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>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A | Back alignment and structure |
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>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A | Back alignment and structure |
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>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A | Back alignment and structure |
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>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
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>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
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>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A | Back alignment and structure |
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>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* | Back alignment and structure |
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>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* | Back alignment and structure |
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>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A | Back alignment and structure |
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>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} | Back alignment and structure |
---|
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* | Back alignment and structure |
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>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A | Back alignment and structure |
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>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A | Back alignment and structure |
---|
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, merlin, actin binding, masking, regulation, SELF-inhibition cell adhesion; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
440 | Type I secretion membrane fusion protein, HlyD [Candida | |||
d1laba_ | 80 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetylt | 0.002 |
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80 | Back information, alignment and structure |
---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422] Score = 37.8 bits (88), Expect = 0.002 Identities = 14/41 (34%), Positives = 21/41 (51%) Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88 E+ N+ VVEI SP G + + V G+ G L+T + Sbjct: 36 CEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 76 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 440 | Type I secretion membrane fusion protein, HlyD [Candida | ||
d1vf7a_ | 237 | Multidrug resistance protein MexA domain {Pseudomonas a | 99.86 | |
d1bdoa_ | 80 | Biotinyl domain of acetyl-CoA carboxylase {Escherichia | 97.17 | |
d1dcza_ | 77 | Biotin carboxyl carrier domain of transcarboxylase (TC | 97.03 | |
d1iyua_ | 79 | Lipoyl domain of dihydrolipoamide acetyltransferase {Az | 96.96 | |
d1ghja_ | 79 | Lipoyl domain of the 2-oxoglutarate dehydrogenase compl | 96.84 | |
d1qjoa_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferase {Es | 96.68 | |
d1k8ma_ | 87 | Lipoyl domain of the mitochondrial branched-chain alpha | 96.62 | |
d1gjxa_ | 81 | Lipoyl domain of dihydrolipoamide acetyltransferase {Ne | 96.04 | |
d1laba_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferase {Ba | 95.85 | |
d1y8ob1 | 102 | Lipoyl domain of dihydrolipoamide acetyltransferase {Hu | 95.43 | |
d1pmra_ | 80 | Lipoyl domain of the 2-oxoglutarate dehydrogenase compl | 95.05 | |
d1ci3m2 | 62 | Cytochrome f, small domain {Phormidium laminosum [TaxId | 91.52 | |
d1dcza_ | 77 | Biotin carboxyl carrier domain of transcarboxylase (TC | 96.93 | |
d2f3ga_ | 150 | Glucose-specific factor III (glsIII) {Escherichia coli | 95.86 | |
d2gpra_ | 154 | Glucose permease IIa domain, IIa-glc {Mycoplasma capric | 95.78 | |
d1bdoa_ | 80 | Biotinyl domain of acetyl-CoA carboxylase {Escherichia | 95.7 | |
d1iyua_ | 79 | Lipoyl domain of dihydrolipoamide acetyltransferase {Az | 95.6 | |
d1y8ob1 | 102 | Lipoyl domain of dihydrolipoamide acetyltransferase {Hu | 94.93 | |
d1gpra_ | 158 | Glucose permease IIa domain, IIa-glc {Bacillus subtilis | 94.71 | |
d1laba_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferase {Ba | 94.66 | |
d1k8ma_ | 87 | Lipoyl domain of the mitochondrial branched-chain alpha | 94.41 | |
d1ghja_ | 79 | Lipoyl domain of the 2-oxoglutarate dehydrogenase compl | 94.38 | |
d1qjoa_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferase {Es | 93.84 | |
d1gjxa_ | 81 | Lipoyl domain of dihydrolipoamide acetyltransferase {Ne | 93.54 | |
d1pmra_ | 80 | Lipoyl domain of the 2-oxoglutarate dehydrogenase compl | 90.89 | |
d2ix0a1 | 90 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | 94.22 | |
d1vf7a_ | 237 | Multidrug resistance protein MexA domain {Pseudomonas a | 93.38 |
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Membrane and cell surface proteins and peptides fold: HlyD-like secretion proteins superfamily: HlyD-like secretion proteins family: HlyD-like secretion proteins domain: Multidrug resistance protein MexA domain species: Pseudomonas aeruginosa [TaxId: 287] Probab=99.86 E-value=2.4e-22 Score=164.47 Aligned_cols=221 Identities=13% Similarity=0.171 Sum_probs=143.2 Q ss_pred EEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 89997999953873898468886899998578989336978999964899888999874343323321001233332221 Q gi|254780386|r 43 SVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDFLNN 122 (440) Q Consensus 43 ~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~ 122 (440) ++..+|.|.|.. ...|.|+++|+|.+++|++||.|+|||+|++||+.+....+...+.++..++++++..+ T Consensus 3 ~~~~~G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~-------- 73 (237) T d1vf7a_ 3 NTELPGRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYK-------- 73 (237) T ss_dssp EEEEEEECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH-------- T ss_pred EEEEEEEEEEEE-EEEEEEECCEEEEEEECCCCCEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH-------- T ss_conf 799889999637-99998216789999987994998899999998238877665333233333222123454-------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 14555422356888877655467886543336554200112221122100223210112232222221023333222101 Q gi|254780386|r 123 KYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMM 202 (440) Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~el~~~ 202 (440) T Consensus 74 -------------------------------------------------------------------------------- 73 (237) T d1vf7a_ 74 -------------------------------------------------------------------------------- 73 (237) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 22222211100001110024666531012233222222222221000122333211233222122222222122233221 Q gi|254780386|r 203 KNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTI 282 (440) Q Consensus 203 ~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~~~~l~~ 282 (440) .+.......+.++. ..+..+.....++.. T Consensus 74 -~l~~~~~~~~~~~~--------------------------------------------------~~~~~~~~a~~~l~~ 102 (237) T d1vf7a_ 74 -LLVADQAVSKQQYA--------------------------------------------------DANAAYLQSKAAVEQ 102 (237) T ss_dssp -HHHHTTSSCHHHHH--------------------------------------------------HHHHHHHHHHHHHHH T ss_pred -HHHHCCCCCCCHHH--------------------------------------------------HHHHHCCHHHHHHHH T ss_conf -44430543220012--------------------------------------------------222200126889999 Q ss_pred CCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCC-CCCCCEEEEEEECHHHHHHCC-------------CCCCE Q ss_conf 2222212345554116873121201222124445542103-355650477532622311015-------------89831 Q gi|254780386|r 283 LEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIV-PHSKLTYIRAKVTPKQIQHVK-------------KGYTA 348 (440) Q Consensus 283 l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Iv-p~~~~l~v~~~v~~~di~~i~-------------~Gq~v 348 (440) ++..+.++.|+||++|+|..... ..|.++.+|.....+. .+...+++.+..++.++..+. .|..+ T Consensus 103 a~~~l~~~~i~ap~~G~v~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~v 181 (237) T d1vf7a_ 103 ARINLRYTKVLSPISGRIGRSAV-TEGALVTNGQANAMATVQQLDPIYVDVTQPSTALLRLRRELASGQLERAGDNAAKV 181 (237) T ss_dssp HHHHHHTTEEECSSSEEECCCSS-CBTCEECTTCSSCSEEEECCSEEECCEEEEHHHHHHHHHHHHHTSSCEEETTEEEC T ss_pred HHHHHCCCCCCCCHHCEEEEEEE-CCCCEECCCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCEE T ss_conf 75322024210420001125772-04848737863245899338510244150388777776542134200025677347 Q ss_pred EEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEEC Q ss_conf 7999812887544399999997133444677765511899999935011256785152377569999922 Q gi|254780386|r 349 TVRFPHYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAK 418 (440) Q Consensus 349 ~i~~~a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~ 418 (440) .+.++..+ ...+.|+|..|++.....+ ..|.|++.+++ ++..|+|||.++|.|.+| T Consensus 182 ~~~~~~~~---~~~~~g~v~~i~~~vd~~t------~t~~v~~~i~n-----~~~~L~pGm~v~v~i~~g 237 (237) T d1vf7a_ 182 SLKLEDGS---QYPLEGRLEFSEVSVDEGT------GSVTIRAVFPN-----PNNELLPGMFVHAQLQEG 237 (237) T ss_dssp CEECTTSC---EESSCCEEESSCSCCCSSS------SEEEECBEEEC-----SSSCCCTTCEEEEEEECC T ss_pred EEEECCCC---CCEEEEEEEEEECCCCCCC------CEEEEEEEEEC-----CCCCCCCCCEEEEEEECC T ss_conf 88603788---7138899999846384888------48999999989-----999688999899999459 |
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
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>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
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>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]} | Back information, alignment and structure |
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>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
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>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} | Back information, alignment and structure |
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>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
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>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 440 | Type I secretion membrane fusion protein, HlyD [Ca | ||
2ejm_A_ | 99 | (A:) Methylcrotonoyl-COA carboxylase subunit alpha | 5e-05 | |
2ejm_A_ | 99 | (A:) Methylcrotonoyl-COA carboxylase subunit alpha | 0.002 | |
1gjx_A_ | 81 | (A:) Pyruvate dehydrogenase; oxidoreductase, lipoy | 1e-04 | |
1k8m_A_ | 93 | (A:) E2 component of branched-chain ahpha-ketoacid | 1e-04 | |
2k7v_A_ | 85 | (A:) Dihydrolipoyllysine-residue acetyltransferase | 1e-04 | |
2qf7_A_1087-1165 | 79 | (A:1087-1165) Pyruvate carboxylase protein; multi- | 2e-04 | |
1ghj_A_ | 79 | (A:) E2, E2, the dihydrolipoamide succinyltransfer | 2e-04 | |
1iyu_A_ | 79 | (A:) E2P, dihydrolipoamide acetyltransferase compo | 2e-04 | |
1z6h_A_ | 72 | (A:) Biotin/lipoyl attachment protein; solution st | 2e-04 | |
2jku_A_ | 94 | (A:) Propionyl-COA carboxylase alpha chain, mitoch | 2e-04 | |
3hbl_A_1069-1150 | 82 | (A:1069-1150) Pyruvate carboxylase; TIM barrel, li | 2e-04 | |
3bg3_A_644-718 | 75 | (A:644-718) Pyruvate carboxylase, mitochondrial; T | 3e-04 | |
1pmr_A_ | 80 | (A:) Dihydrolipoyl succinyltransferase; 2-oxogluta | 3e-04 | |
1bdo_A_ | 80 | (A:) Acetyl-COA carboxylase; BCCPSC, carboxyl tran | 4e-04 | |
1qjo_A_ | 80 | (A:) Dihydrolipoamide acetyltransferase; lipoyl do | 4e-04 | |