HHsearch alignment for GI: 254780386 and conserved domain: PRK11578
>PRK11578 macrolide transporter subunit MacA; Provisional.
Probab=99.97 E-value=2.6e-30 Score=220.63 Aligned_cols=258 Identities=16% Similarity=0.241 Sum_probs=173.6
Q ss_pred EEEEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 67125899979999538738984688868999985789893369789999648998889998743433233210012333
Q gi|254780386|r 38 LPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSAL 117 (440)
Q Consensus 38 ~~~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~~~~~~l~~l~~~l~~~~~~l 117 (440)
T Consensus 21 ~~i~~~v~~~G~v~a~~-~~~i~a~v~G~I~~i~v~~Gd~V~kGqvL~~ld~~~~~~~l~~a~a~l~~~~a~l~~a~~~~ 99 (347)
T PRK11578 21 GDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELNAQRQQAEAEL 99 (347)
T ss_pred EEEEEEEEEEEEEEEEE-EEEEECCCCEEEEEEECCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87259999999999838-99997407789999998993988899999998749999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 32221145554223568888776554678865433365542001122211221002232101122322222210233332
Q gi|254780386|r 118 DFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQK 197 (440)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 197 (440)
T Consensus 100 ~~---------------------------------------------------------------------------a~~ 104 (347)
T PRK11578 100 KL---------------------------------------------------------------------------ARV 104 (347)
T ss_pred HH---------------------------------------------------------------------------HHH
T ss_conf 99---------------------------------------------------------------------------899
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22101222222111000011100246665310122332222222222210001223332112332221222222221222
Q gi|254780386|r 198 DLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEM 277 (440)
Q Consensus 198 el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~~ 277 (440)
T Consensus 105 ~~~r~~~L~~~~~is~~~~d~a~~~~~~~~a~l------------------------------------~~~~a~~~~~~ 148 (347)
T PRK11578 105 TLSRQQRLAKTQAVSQQDLDTAATEMAVKQAQI------------------------------------GTIDAQIKRNQ 148 (347)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHH
T ss_conf 999999998757624788988787999876458------------------------------------89999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCC---CCCCCCCCCCEEEEEEECHHHHHHCCCCCCEEEEEEE
Q ss_conf 3322122222123455541168731212012221244455---4210335565047753262231101589831799981
Q gi|254780386|r 278 SKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQP---LMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPH 354 (440)
Q Consensus 278 ~~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~---l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~i~~~a 354 (440)
T Consensus 149 a~l~~a~~~l~~t~I~AP~~GvV~~~~~-~~G~~v~~~~~~~~l~~i~-~~~~l~v~~~V~e~d~~~i~~G~~v~v~~~~ 226 (347)
T PRK11578 149 ASLDTAKTNLDYTRIVAPMAGEVTQITT-LQGQTVIAAQQAPNILTLA-DMSTMLVKAQVSEADVIHLKPGQKAWFTVLG 226 (347)
T ss_pred HHHHHHHHHHHCCEEECCCCCEEEEEEE-ECCCEEECCCCCCEEEEEC-CCCCEEEECCCCHHHHHHCCCCCEEEEEEEC
T ss_conf 9999998765256998257844867998-3398886378874135731-6861799816667788633579769999976
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECEEE
Q ss_conf 2887544399999997133444677765511899999935011256785152377569999922054
Q gi|254780386|r 355 YADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNTT 421 (440)
Q Consensus 355 ~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~~~ 421 (440)
T Consensus 227 ~~~~---~~~G~v~~I~~~~~~~~----~~~~~~v~i~~~~~-----~~~l~~G~~~~v~i~~~~~~ 281 (347)
T PRK11578 227 DPLT---RYEGVLKDILPTPEKVN----DAIFYYARFEVPNP-----NGLLRLDMTAQVHIQLTDVK 281 (347)
T ss_pred CCCC---EEEEEEEEEECCCCCCC----CEEEEEEEEECCCC-----CCCCCCCCEEEEEEEECCCC
T ss_conf 9995---99999999966103433----30799999852582-----01367895799999966868