HHsearch alignment for GI: 254780386 and conserved domain: TIGR00998
>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=100.00 E-value=2.3e-38 Score=274.36 Aligned_cols=355 Identities=15% Similarity=0.225 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECCCEEEEEC-CCCCEEEEEECCCCCEEECCCEEEEECHHHHHH
Q ss_conf 6899999999999999987640671258999799995387389846-888689999857898933697899996489988
Q gi|254780386|r 16 SLKRMTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIKS-PFSGIIKKFQVENGSQILQGTPLLTFEDIETTD 94 (440)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~v~~~G~i~~~~~~~~I~s-~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~ 94 (440)
T Consensus 4 ~~~l~vv~Li~~a~a~~~y~~~~~~~~~~T~d--AYV~a~~~~v~sF~VsG~v~~v~~~d~d~Vk~GD~Lv~LD~t~a~~ 81 (379)
T TIGR00998 4 FLLLLVVLLIVVALAYAIYWFLVLRDYESTDD--AYVKANQLQVSSFQVSGSVIEVNVDDTDYVKQGDVLVRLDPTDAEL 81 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHCCCCCEEEEEEEEEEEEEEEEECCCCCCEECCEEEEECCCHHHH
T ss_conf 67999999999999999999988740112114--6212773023246573248999743788420311566767716899
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 89998743433233210012333322211455542235688887765546788654333655420011222112210022
Q gi|254780386|r 95 LIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSI 174 (440)
Q Consensus 95 ~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (440)
T Consensus 82 ~~~~Ae~~LAa~~rq~~~l~~~~~~l~~GLHi---sLsak---------------------------------kL~v~s~ 125 (379)
T TIGR00998 82 ALAKAEANLAALVRQTKQLEITVQQLQAGLHI---SLSAK---------------------------------KLKVESL 125 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHH---------------------------------HHHHHHH
T ss_conf 99999999999999888873116776356400---02456---------------------------------7889999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf 321011223222222102333322210122222211100---0011100246665310122332222--22222221000
Q gi|254780386|r 175 YLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQ---NDLNQQERIVYKSTLELRENIHEQK--NMLRHINELYD 249 (440)
Q Consensus 175 ~~~~~~l~~~~~~l~~~~~~~~~el~~~~~l~~~~~~~~---~~l~~~~~~~~~~~~el~~~~~~~~--~~~~~l~~~~~ 249 (440)
T Consensus 126 ~~~~~qar~~l~qae~~~~~~~~dl~Rr~~L~~~G~I~~RkFE~l~~ar~a~~~a~A~L~aa~~~I~evT~~~R~~~G~~ 205 (379)
T TIGR00998 126 KIKLEQAREKLKQAEEKIKLVKLDLRRRVPLLKKGLISRRKFEELDHARKALLSAKAALNAAIQEINEVTEIKRAKKGQL 205 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998767876565321535348898478998754443476899999999878899854334567899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 12233321123322212222222212223322122222123455541168731212012221244455421033556504
Q gi|254780386|r 250 EANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTY 329 (440)
Q Consensus 250 ~~~~~~~~~~~e~~~~l~e~~~~l~~~~~~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~ 329 (440)
T Consensus 206 ~An~Al-~~~~~L~~qpasLeeev~~A~~~~~~A~L~L~rT~iraP~dG~Va~r~v-qvG~~vS~g~p~ma~V-~~~~~y 282 (379)
T TIGR00998 206 NANQAL-VRGTPLKKQPASLEEEVQEAKERLKKAWLALKRTEIRAPFDGYVARRKV-QVGQVVSPGQPLMAVV-PAEQMY 282 (379)
T ss_pred HHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEEC-CCCCEECCCCCEEEEE-CCCCEE
T ss_conf 998741-1244204334107899999999999998740185643672205877630-7886115897257778-454048
Q ss_pred EEEEECHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCC---------CC------CCEEEEEEEEEC
Q ss_conf 775326223110158983179998128875443999999971334446777---------65------511899999935
Q gi|254780386|r 330 IRAKVTPKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDPIISQQDNN---------LQ------TQEYYEVILKIT 394 (440)
Q Consensus 330 v~~~v~~~di~~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is~~~~~~~~~---------~~------~~~~y~v~i~~~ 394 (440)
T Consensus 283 V~ANFkETqL~~vR~G~~v~i~~DlYg~dv--~F~GkV~gi~~GvLPDDtG~~f~llP~qnatGNWiKvVQR~PV~I~lD 360 (379)
T TIGR00998 283 VEANFKETQLKNVRIGQPVTIRSDLYGSDV--VFEGKVTGISMGVLPDDTGSAFSLLPAQNATGNWIKVVQRLPVRIKLD 360 (379)
T ss_pred EEEEEECCCCCCCCCCCCEEEEEEECCCCC--EEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEEEEEEEC
T ss_conf 987520132057457872589985438980--797488422663356740455410443125545289989742688626
Q ss_pred HHHCCCCCCEECCCCEEEEEE
Q ss_conf 011256785152377569999
Q gi|254780386|r 395 DLAFSDNNIELRNGFPAEVLF 415 (440)
Q Consensus 395 ~~~~~~~~~~L~~Gm~~~~~I 415 (440)
T Consensus 361 ~~~L~~~--pLRiGlS~~v~i 379 (379)
T TIGR00998 361 KKELDEH--PLRIGLSAEVEI 379 (379)
T ss_pred HHHHHCC--CCEECCCEEEEC
T ss_conf 2554006--651216326739