HHsearch alignment for GI: 254780386 and conserved domain: TIGR01730
>TIGR01730 RND_mfp efflux transporter, RND family, MFP subunit; InterPro: IPR006143 Gram-negative bacteria produce a number of proteins which are secreted into the growth medium by a mechanism that does not require a cleaved N-terminal signal sequence. These proteins, while having different functions, require the help of two or more proteins for their secretion across the cell envelope. These secretion proteins include members belonging to the ABC transporter family (see the relevant entry IPR003439 from INTERPRO) and a protein belonging to a family which includes the following members , , , , : Hemolysin secretion protein D from Escherichia coli. Lactococcin A secretion protein lcnD from Lactococcus lactis. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) cyaD from Bordetella pertussis. Colicin Vsecretion protein cvaA from Escherichia coli. Proteases secretion protein prtE from Erwinia chrysanthemi. Alkaline protease secretion protein aprE from Pseudomonas aeruginosa. Multidrug resistance protein A from Escherichia coli. The secretion proteins are evolutionary related and consist of from 390 to 480 amino acid residues. They seem to be anchored in the inner membrane by a N-terminal transmembrane region. Their exact role in the secretion process is not yet known.; GO: 0008565 protein transporter activity, 0009306 protein secretion, 0016020 membrane.
Probab=99.38 E-value=7.6e-12 Score=97.39 Aligned_cols=242 Identities=19% Similarity=0.287 Sum_probs=163.5
Q ss_pred EEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 12589997999953873898468886899998578989336978999964899888999874343323321001233332
Q gi|254780386|r 40 IEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDF 119 (440)
Q Consensus 40 ~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~ 119 (440)
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 87 (333)
T TIGR01730 11 LALSLTFPGSLEALDEA-ELAPEVAGKLTKLLVREGQKVKKGQLLARLDDDDYRLALDAALAQLAAAEAQLELAEVSL-- 87 (333)
T ss_pred CCCCCEEEEEECCCCHH-HHHHHCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 12220000332010001-001110440022110036420136245765545788888877777888888998888888--
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22114555422356888877655467886543336554200112221122100223210112232222221023333222
Q gi|254780386|r 120 LNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDL 199 (440)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~el 199 (440)
T Consensus 88 -------------------------------------------------------------------------------- 87 (333)
T TIGR01730 88 -------------------------------------------------------------------------------- 87 (333)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10122222211100001110024666531012233222222222221000122333211233222122222222122233
Q gi|254780386|r 200 TMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSK 279 (440)
Q Consensus 200 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~~~~ 279 (440)
T Consensus 88 ~~~~~l~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~ 124 (333)
T TIGR01730 88 ERAERLLKRSAVSQADLDDAKAA-------------------------------------------LEAARADLEAAKAS 124 (333)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHHHHH
T ss_conf 88888775301105677778888-------------------------------------------88777666666667
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCC--CCCCCCCCCCCCEEEEEEECHHHHHHCCCC-----CCEEEEE
Q ss_conf 221222221234555411687312120122212444--554210335565047753262231101589-----8317999
Q gi|254780386|r 280 LTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQS--QPLMKIVPHSKLTYIRAKVTPKQIQHVKKG-----YTATVRF 352 (440)
Q Consensus 280 l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G--~~l~~Ivp~~~~l~v~~~v~~~di~~i~~G-----q~v~i~~ 352 (440)
T Consensus 125 ~~~~~~~~~~~~~~~p~~g~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (333)
T TIGR01730 125 LASARLNLSYTEIRAPFDGTIGRRLV-EVGEYVSAGQATPLLTLV-DLDPLEADFSVPERDLPQLRRGAPGGWQKLTVVL 202 (333)
T ss_pred HHHHHHHHHHCEEECCCCCEEEEEEC-CCCCCCCCCCCCEEEEEE-ECCEEEEEEECCHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 88888754301552343430111110-223311355541146764-1441689985133455444124444543311465
Q ss_pred EECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECEEE
Q ss_conf 812887544399999997133444677765511899999935011256785152377569999922054
Q gi|254780386|r 353 PHYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNTT 421 (440)
Q Consensus 353 ~a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~~~ 421 (440)
T Consensus 203 ~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~ 259 (333)
T TIGR01730 203 DALPGT-GEEFKGKLRFIDPRVDAGTG------TLRVRALFPN-----PDGALLPGMFGRVTLLLGERS 259 (333)
T ss_pred ECCCCC-CEEEEEEEEEECCCCCCCCC------EEEEEEEECC-----CCCCCCCCCEEEEEEEECCCC
T ss_conf 136765-21445544431123465542------3799998537-----654201562478998403566