HHsearch alignment for GI: 254780386 and conserved domain: TIGR01730

>TIGR01730 RND_mfp efflux transporter, RND family, MFP subunit; InterPro: IPR006143 Gram-negative bacteria produce a number of proteins which are secreted into the growth medium by a mechanism that does not require a cleaved N-terminal signal sequence. These proteins, while having different functions, require the help of two or more proteins for their secretion across the cell envelope. These secretion proteins include members belonging to the ABC transporter family (see the relevant entry IPR003439 from INTERPRO) and a protein belonging to a family which includes the following members , , , , : Hemolysin secretion protein D from Escherichia coli. Lactococcin A secretion protein lcnD from Lactococcus lactis. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) cyaD from Bordetella pertussis. Colicin Vsecretion protein cvaA from Escherichia coli. Proteases secretion protein prtE from Erwinia chrysanthemi. Alkaline protease secretion protein aprE from Pseudomonas aeruginosa. Multidrug resistance protein A from Escherichia coli. The secretion proteins are evolutionary related and consist of from 390 to 480 amino acid residues. They seem to be anchored in the inner membrane by a N-terminal transmembrane region. Their exact role in the secretion process is not yet known.; GO: 0008565 protein transporter activity, 0009306 protein secretion, 0016020 membrane.
Probab=99.38  E-value=7.6e-12  Score=97.39  Aligned_cols=242  Identities=19%  Similarity=0.287  Sum_probs=163.5

Q ss_pred             EEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             12589997999953873898468886899998578989336978999964899888999874343323321001233332
Q gi|254780386|r   40 IEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDF  119 (440)
Q Consensus        40 ~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~  119 (440)
T Consensus        11 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   87 (333)
T TIGR01730        11 LALSLTFPGSLEALDEA-ELAPEVAGKLTKLLVREGQKVKKGQLLARLDDDDYRLALDAALAQLAAAEAQLELAEVSL--   87 (333)
T ss_pred             CCCCCEEEEEECCCCHH-HHHHHCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf             12220000332010001-001110440022110036420136245765545788888877777888888998888888--


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             22114555422356888877655467886543336554200112221122100223210112232222221023333222
Q gi|254780386|r  120 LNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDL  199 (440)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~el  199 (440)
                                                                                                      
T Consensus        88 --------------------------------------------------------------------------------   87 (333)
T TIGR01730        88 --------------------------------------------------------------------------------   87 (333)
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10122222211100001110024666531012233222222222221000122333211233222122222222122233
Q gi|254780386|r  200 TMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSK  279 (440)
Q Consensus       200 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~~~~  279 (440)
T Consensus        88 ~~~~~l~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~  124 (333)
T TIGR01730        88 ERAERLLKRSAVSQADLDDAKAA-------------------------------------------LEAARADLEAAKAS  124 (333)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHHHHH
T ss_conf             88888775301105677778888-------------------------------------------88777666666667


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCC--CCCCCCCCCCCCEEEEEEECHHHHHHCCCC-----CCEEEEE
Q ss_conf             221222221234555411687312120122212444--554210335565047753262231101589-----8317999
Q gi|254780386|r  280 LTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQS--QPLMKIVPHSKLTYIRAKVTPKQIQHVKKG-----YTATVRF  352 (440)
Q Consensus       280 l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G--~~l~~Ivp~~~~l~v~~~v~~~di~~i~~G-----q~v~i~~  352 (440)
T Consensus       125 ~~~~~~~~~~~~~~~p~~g~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (333)
T TIGR01730       125 LASARLNLSYTEIRAPFDGTIGRRLV-EVGEYVSAGQATPLLTLV-DLDPLEADFSVPERDLPQLRRGAPGGWQKLTVVL  202 (333)
T ss_pred             HHHHHHHHHHCEEECCCCCEEEEEEC-CCCCCCCCCCCCEEEEEE-ECCEEEEEEECCHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             88888754301552343430111110-223311355541146764-1441689985133455444124444543311465


Q ss_pred             EECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECEEE
Q ss_conf             812887544399999997133444677765511899999935011256785152377569999922054
Q gi|254780386|r  353 PHYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNTT  421 (440)
Q Consensus       353 ~a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~~~  421 (440)
T Consensus       203 ~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~  259 (333)
T TIGR01730       203 DALPGT-GEEFKGKLRFIDPRVDAGTG------TLRVRALFPN-----PDGALLPGMFGRVTLLLGERS  259 (333)
T ss_pred             ECCCCC-CEEEEEEEEEECCCCCCCCC------EEEEEEEECC-----CCCCCCCCCEEEEEEEECCCC
T ss_conf             136765-21445544431123465542------3799998537-----654201562478998403566