Query gi|254780386|ref|YP_003064799.1| Type I secretion membrane fusion protein, HlyD [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 440
No_of_seqs 809 out of 6523
Neff 10.7
Searched_HMMs 23785
Date Mon May 30 11:16:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780386.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fpp_A Macrolide-specific effl 99.9 2.7E-24 1.2E-28 179.0 14.2 259 37-421 13-274 (341)
2 3h9i_A Cation efflux system pr 99.9 1.3E-24 5.5E-29 181.1 11.8 120 286-421 204-323 (407)
3 3lnn_A Membrane fusion protein 99.9 5.5E-24 2.3E-28 177.0 14.6 117 288-421 169-286 (359)
4 2f1m_A Acriflavine resistance 99.9 3E-24 1.2E-28 178.7 11.5 251 38-430 5-267 (277)
5 1vf7_A Multidrug resistance pr 99.7 4.1E-17 1.7E-21 131.1 6.6 74 37-111 25-98 (369)
6 2k32_A A; NMR {Campylobacter j 99.4 1.1E-13 4.6E-18 108.2 4.1 46 286-333 64-110 (116)
7 1i84_S Smooth muscle myosin he 97.4 8.7E-05 3.7E-09 48.8 3.0 202 90-291 916-1122(1184)
8 1bdo_A Acetyl-COA carboxylase; 97.2 0.00058 2.4E-08 43.3 6.2 42 47-88 39-80 (80)
9 1z6h_A Biotin/lipoyl attachmen 97.2 0.00063 2.6E-08 43.1 6.1 41 49-89 29-69 (72)
10 2d5d_A Methylmalonyl-COA decar 97.1 0.00084 3.5E-08 42.2 6.1 39 49-87 35-73 (74)
11 1k8m_A E2 component of branche 97.1 0.00075 3.1E-08 42.6 5.4 42 48-89 39-80 (93)
12 1dcz_A Transcarboxylase 1.3S s 97.1 0.00048 2E-08 43.8 4.4 32 289-321 8-39 (77)
13 1z6h_A Biotin/lipoyl attachmen 97.1 0.0004 1.7E-08 44.4 3.8 29 59-87 2-30 (72)
14 3n6r_A Propionyl-COA carboxyla 97.0 0.00053 2.2E-08 43.6 4.3 33 288-321 611-643 (681)
15 2b5u_A Colicin E3; high resolu 97.0 0.00011 4.7E-09 48.1 0.7 198 90-288 331-528 (551)
16 1iyu_A E2P, dihydrolipoamide a 97.0 0.0015 6.1E-08 40.6 6.2 43 48-90 33-75 (79)
17 3hbl_A Pyruvate carboxylase; T 96.9 0.0015 6.3E-08 40.6 5.9 32 289-321 1077-1108(1150)
18 2kcc_A Acetyl-COA carboxylase 96.9 0.00043 1.8E-08 44.2 3.1 31 290-321 6-36 (84)
19 2d5d_A Methylmalonyl-COA decar 96.9 0.00083 3.5E-08 42.3 4.4 31 290-321 6-36 (74)
20 2ejm_A Methylcrotonoyl-COA car 96.9 0.00098 4.1E-08 41.8 4.6 31 290-321 15-45 (99)
21 2dn8_A Acetyl-COA carboxylase 96.8 0.00077 3.2E-08 42.5 3.5 34 288-322 16-49 (100)
22 1ghj_A E2, E2, the dihydrolipo 96.8 0.0022 9.1E-08 39.5 5.7 42 48-89 36-77 (79)
23 1dcz_A Transcarboxylase 1.3S s 96.8 0.002 8.3E-08 39.8 5.5 34 56-89 8-41 (77)
24 2jku_A Propionyl-COA carboxyla 96.7 0.00028 1.2E-08 45.5 0.9 30 59-88 28-57 (94)
25 1qjo_A Dihydrolipoamide acetyl 96.7 0.0013 5.4E-08 41.0 4.0 41 49-89 36-76 (80)
26 2jku_A Propionyl-COA carboxyla 96.7 0.00044 1.9E-08 44.1 1.6 35 287-322 23-57 (94)
27 2ejm_A Methylcrotonoyl-COA car 96.6 0.0011 4.4E-08 41.6 3.3 42 48-89 43-84 (99)
28 3bg3_A Pyruvate carboxylase, m 96.4 0.0012 5E-08 41.3 2.5 32 289-321 649-680 (718)
29 2qf7_A Pyruvate carboxylase pr 96.4 0.0019 8E-08 39.9 3.4 32 289-321 1095-1126(1165)
30 3hbl_A Pyruvate carboxylase; T 96.4 0.0027 1.1E-07 38.8 4.2 37 334-371 1091-1129(1150)
31 2k7v_A Dihydrolipoyllysine-res 96.4 0.0011 4.6E-08 41.5 2.1 30 291-321 4-33 (85)
32 2qf7_A Pyruvate carboxylase pr 96.4 0.002 8.6E-08 39.7 3.3 13 338-350 1113-1125(1165)
33 2dn8_A Acetyl-COA carboxylase 96.3 0.0082 3.5E-07 35.6 6.0 31 57-87 18-48 (100)
34 3bg3_A Pyruvate carboxylase, m 96.3 0.001 4.3E-08 41.7 1.3 25 342-371 582-606 (718)
35 2kcc_A Acetyl-COA carboxylase 96.2 0.0038 1.6E-07 37.9 3.9 31 58-88 7-37 (84)
36 1gjx_A Pyruvate dehydrogenase; 96.1 0.0019 8E-08 39.9 1.9 39 50-88 38-76 (81)
37 2gpr_A Glucose-permease IIA co 95.7 0.03 1.3E-06 31.9 6.7 14 291-304 9-22 (154)
38 1bdo_A Acetyl-COA carboxylase; 95.7 0.0046 1.9E-07 37.3 2.5 34 288-321 3-42 (80)
39 1iyu_A E2P, dihydrolipoamide a 95.6 0.0086 3.6E-07 35.5 3.6 25 296-321 11-35 (79)
40 3crk_C Dihydrolipoyllysine-res 95.5 0.02 8.3E-07 33.1 5.3 41 49-89 41-82 (87)
41 1y8o_B Dihydrolipoyllysine-res 95.5 0.019 8.2E-07 33.1 5.1 40 49-88 63-103 (128)
42 2dnc_A Pyruvate dehydrogenase 95.4 0.016 6.8E-07 33.7 4.5 40 49-88 43-83 (98)
43 1f3z_A EIIA-GLC, glucose-speci 95.4 0.046 1.9E-06 30.7 6.7 17 289-305 12-28 (161)
44 2dne_A Dihydrolipoyllysine-res 95.4 0.019 8.2E-07 33.1 4.8 43 48-90 42-85 (108)
45 3ghg_A Fibrinogen alpha chain; 94.9 0.0054 2.3E-07 36.9 0.9 10 91-100 50-59 (562)
46 3ghg_A Fibrinogen alpha chain; 94.9 0.012 5.1E-07 34.5 2.6 16 93-108 63-78 (562)
47 2dne_A Dihydrolipoyllysine-res 94.8 0.014 5.8E-07 34.2 2.6 25 64-88 21-45 (108)
48 1pmr_A Dihydrolipoyl succinylt 94.7 0.0023 9.5E-08 39.4 -1.4 31 290-321 46-76 (80)
49 3crk_C Dihydrolipoyllysine-res 94.7 0.02 8.3E-07 33.1 3.3 25 64-88 19-43 (87)
50 2dnc_A Pyruvate dehydrogenase 94.6 0.016 6.9E-07 33.6 2.8 23 298-321 22-44 (98)
51 1m1j_A Fibrinogen alpha subuni 94.6 0.045 1.9E-06 30.7 5.0 32 169-200 132-163 (491)
52 1y8o_B Dihydrolipoyllysine-res 94.6 0.022 9.2E-07 32.8 3.3 25 297-322 41-65 (128)
53 3iox_A AGI/II, PA; alpha helix 94.5 0.16 6.6E-06 27.1 7.4 34 92-125 7-40 (497)
54 1ax3_A Iiaglc, glucose permeas 94.2 0.084 3.5E-06 28.9 5.6 21 285-305 8-28 (162)
55 1ghj_A E2, E2, the dihydrolipo 94.1 0.017 7E-07 33.6 1.9 30 291-321 46-75 (79)
56 1deq_A Fibrinogen (alpha chain 94.0 0.017 7.1E-07 33.5 1.7 12 91-102 53-64 (390)
57 1k8m_A E2 component of branche 93.9 0.025 1.1E-06 32.4 2.4 31 290-321 48-78 (93)
58 1zy8_K Pyruvate dehydrogenase 93.8 0.0089 3.8E-07 35.4 0.0 29 63-91 16-44 (229)
59 1m1j_B Fibrinogen beta chain; 93.7 0.03 1.3E-06 31.9 2.6 14 91-104 86-99 (464)
60 2k32_A A; NMR {Campylobacter j 93.7 0.018 7.4E-07 33.4 1.4 40 57-96 2-41 (116)
61 1gjx_A Pyruvate dehydrogenase; 93.5 0.022 9.1E-07 32.8 1.6 35 289-324 44-78 (81)
62 3dva_I Dihydrolipoyllysine-res 93.5 0.011 4.6E-07 34.8 0.0 42 49-90 38-79 (428)
63 1m1j_B Fibrinogen beta chain; 93.3 0.03 1.3E-06 31.9 2.0 18 97-114 96-113 (464)
64 3dva_I Dihydrolipoyllysine-res 93.2 0.013 5.5E-07 34.3 0.0 34 62-95 14-47 (428)
65 3iox_A AGI/II, PA; alpha helix 93.1 0.023 9.9E-07 32.6 1.2 25 93-117 15-39 (497)
66 2f1m_A Acriflavine resistance 93.1 0.029 1.2E-06 31.9 1.7 33 323-356 226-258 (277)
67 2k7v_A Dihydrolipoyllysine-res 93.0 0.061 2.6E-06 29.8 3.2 39 51-89 34-72 (85)
68 1qjo_A Dihydrolipoamide acetyl 92.9 0.036 1.5E-06 31.3 1.9 38 284-322 38-75 (80)
69 1m1j_A Fibrinogen alpha subuni 92.7 0.045 1.9E-06 30.7 2.2 29 174-202 130-158 (491)
70 2i1j_A Moesin; FERM, coiled-co 92.5 0.012 5.1E-07 34.5 -0.9 13 40-52 216-228 (575)
71 1pmr_A Dihydrolipoyl succinylt 91.3 0.056 2.4E-06 30.0 1.4 33 56-88 45-77 (80)
72 3c9i_A Tail needle protein GP2 90.4 0.02 8.5E-07 33.0 -1.6 21 266-286 214-234 (242)
73 3h9i_A Cation efflux system pr 90.2 0.11 4.4E-06 28.2 1.9 56 38-93 102-159 (407)
74 3lnn_A Membrane fusion protein 90.0 0.088 3.7E-06 28.8 1.4 55 37-91 37-92 (359)
75 3fpp_A Macrolide-specific effl 89.9 0.1 4.2E-06 28.4 1.6 49 71-119 52-101 (341)
76 1vf7_A Multidrug resistance pr 89.6 0.098 4.1E-06 28.5 1.4 120 284-419 132-266 (369)
77 2auk_A DNA-directed RNA polyme 89.1 0.15 6.4E-06 27.2 2.1 14 308-321 68-81 (190)
78 3ghg_B Fibrinogen beta chain; 88.8 0.11 4.6E-06 28.1 1.2 12 331-342 291-302 (461)
79 3cdx_A Succinylglutamatedesucc 88.5 0.51 2.1E-05 23.7 4.4 30 291-322 269-298 (354)
80 1bg1_A Protein (transcription 88.5 0.23 9.8E-06 25.9 2.7 14 421-435 434-447 (596)
81 3h5q_A PYNP, pyrimidine-nucleo 88.0 0.68 2.9E-05 22.8 4.8 23 287-309 336-358 (436)
82 2dsj_A Pyrimidine-nucleoside ( 87.7 0.71 3E-05 22.7 4.7 21 289-309 327-347 (423)
83 2qj8_A MLR6093 protein; NP_106 87.6 0.56 2.3E-05 23.4 4.2 31 291-323 259-289 (332)
84 2gu1_A Zinc peptidase; alpha/b 86.6 0.47 2E-05 23.9 3.3 51 290-349 243-293 (361)
85 3fmc_A Putative succinylglutam 86.3 0.92 3.9E-05 22.0 4.7 31 290-322 291-321 (368)
86 1zy8_K Pyruvate dehydrogenase 86.1 0.12 4.9E-06 28.0 0.0 42 48-89 38-80 (229)
87 2hsi_A Putative peptidase M23; 85.6 0.42 1.7E-05 24.3 2.6 53 288-349 189-241 (282)
88 1ci3_M Protein (cytochrome F); 85.3 0.35 1.5E-05 24.8 2.1 54 288-348 168-221 (249)
89 1m1j_C Fibrinogen gamma chain; 85.1 0.094 3.9E-06 28.6 -0.9 108 89-197 33-140 (409)
90 2efr_A General control protein 84.3 0.12 5.2E-06 27.8 -0.6 20 96-115 9-28 (155)
91 2jxm_B Cytochrome F; copper, e 83.8 0.24 1E-05 25.8 0.8 53 288-348 169-221 (249)
92 3m9b_A Proteasome-associated A 83.4 0.8 3.4E-05 22.4 3.3 74 278-364 82-162 (251)
93 1y1u_A Signal transducer and a 83.3 0.24 1E-05 25.9 0.6 13 421-434 442-454 (585)
94 3ghg_C Fibrinogen gamma chain; 82.4 0.12 5.2E-06 27.8 -1.2 10 333-342 227-236 (411)
95 1bf5_A Signal transducer and a 82.3 0.018 7.6E-07 33.4 -5.5 13 421-434 418-430 (575)
96 2efr_A General control protein 82.2 0.072 3E-06 29.3 -2.4 10 101-110 21-30 (155)
97 2fxo_A Myosin heavy chain, car 81.8 0.41 1.7E-05 24.3 1.3 24 92-115 11-34 (129)
98 3nyy_A Putative glycyl-glycine 80.1 1.4 6E-05 20.7 3.6 50 291-348 141-190 (252)
99 1cii_A Colicin IA; bacteriocin 79.8 0.01 4.4E-07 34.9 -7.4 201 88-288 47-250 (602)
100 2dfs_A Myosin-5A; myosin-V, in 79.3 0.02 8.4E-07 33.0 -6.1 199 91-289 850-1048(1080)
101 1uou_A Thymidine phosphorylase 77.3 1.3 5.7E-05 20.9 2.8 26 286-311 369-394 (474)
102 2tpt_A Thymidine phosphorylase 77.3 0.82 3.4E-05 22.3 1.7 19 287-305 338-356 (440)
103 2b9c_A Striated-muscle alpha t 77.0 0.3 1.3E-05 25.2 -0.6 145 99-243 1-147 (147)
104 3na7_A HP0958; flagellar bioge 76.9 0.15 6.5E-06 27.1 -2.1 20 330-349 204-223 (256)
105 1yvl_A Signal transducer and a 76.4 1.3 5.5E-05 21.0 2.5 13 421-434 553-565 (683)
106 1qwy_A Peptidoglycan hydrolase 75.4 1.1 4.8E-05 21.3 2.0 54 288-349 194-248 (291)
107 1brw_A PYNP, protein (pyrimidi 75.0 1.6 6.7E-05 20.4 2.6 28 283-310 329-356 (433)
108 3na7_A HP0958; flagellar bioge 74.3 0.28 1.2E-05 25.4 -1.4 37 97-133 14-50 (256)
109 3mmp_A Elongation factor TU 2, 73.3 3.5 0.00015 18.1 5.0 117 297-419 508-649 (678)
110 1h9m_A MODG, molybdenum-bindin 68.5 4.4 0.00019 17.4 7.3 104 295-418 11-137 (145)
111 1gut_A Mopii, molybdate bindin 66.3 3.5 0.00015 18.0 2.8 54 361-418 7-62 (68)
112 3paj_A Nicotinate-nucleotide p 63.6 5 0.00021 17.1 3.2 52 37-90 72-132 (320)
113 3l4q_C Phosphatidylinositol 3- 61.8 0.68 2.8E-05 22.8 -1.5 48 94-141 10-57 (170)
114 2id0_A Exoribonuclease 2; RNAs 59.6 6.4 0.00027 16.3 4.5 16 296-313 564-579 (644)
115 3e1y_E Eukaryotic peptide chai 59.2 6.5 0.00028 16.3 5.3 45 309-354 28-73 (204)
116 1g8x_A Myosin II heavy chain f 59.0 5 0.00021 17.1 2.5 10 68-77 742-751 (1010)
117 3csq_A Morphogenesis protein 1 58.5 2.6 0.00011 18.9 1.0 58 289-349 202-260 (334)
118 3d4r_A Domain of unknown funct 58.1 6.8 0.00029 16.2 3.9 38 307-348 91-128 (169)
119 1o4u_A Type II quinolic acid p 57.5 6.3 0.00026 16.4 2.8 26 65-90 70-95 (285)
120 1x1o_A Nicotinate-nucleotide p 57.5 5.5 0.00023 16.8 2.5 25 66-90 72-96 (286)
121 3it5_A Protease LASA; metallop 56.6 4.3 0.00018 17.5 1.9 14 289-302 48-61 (182)
122 2wps_A Trimeric autotransporte 56.1 1.8 7.6E-05 20.0 -0.2 37 94-130 6-42 (107)
123 3gnn_A Nicotinate-nucleotide p 55.9 7.4 0.00031 15.9 3.0 26 65-90 85-110 (298)
124 1fr3_A MOP, molybdate/tungstat 55.6 7.5 0.00031 15.9 3.4 54 361-418 7-61 (67)
125 1e2w_A Cytochrome F; electron 53.7 4.5 0.00019 17.3 1.6 10 363-372 175-184 (251)
126 1q90_A Apocytochrome F; membra 53.7 8 0.00034 15.7 3.9 16 289-304 168-183 (292)
127 1qap_A Quinolinic acid phospho 53.4 7.4 0.00031 15.9 2.6 23 68-90 87-109 (296)
128 1qpo_A Quinolinate acid phosph 52.9 8.2 0.00035 15.6 4.3 47 44-90 38-95 (284)
129 1sjj_A Actinin; 3-helix bundle 52.2 0.21 8.8E-06 26.3 -5.5 196 90-285 460-666 (863)
130 1c1g_A Tropomyosin; contractIl 51.6 0.26 1.1E-05 25.7 -5.1 181 90-270 100-282 (284)
131 2b7n_A Probable nicotinate-nuc 51.2 8.8 0.00037 15.4 3.1 22 69-90 61-82 (273)
132 2k52_A Uncharacterized protein 50.2 9.1 0.00038 15.3 3.7 49 294-356 7-60 (80)
133 2wg5_A General control protein 49.7 1.9 8E-05 19.8 -0.9 72 270-351 13-84 (109)
134 2jbm_A Nicotinate-nucleotide p 48.8 9.5 0.0004 15.2 2.7 27 63-90 69-95 (299)
135 2vb2_X Copper protein, cation 46.4 10 0.00044 14.9 4.7 57 295-354 17-74 (88)
136 2wad_A Penicillin-binding prot 45.0 6.9 0.00029 16.1 1.4 15 61-78 57-71 (680)
137 2jz2_A SSL0352 protein; SH3-li 43.3 11 0.00048 14.7 2.3 29 342-373 2-30 (66)
138 3l0g_A Nicotinate-nucleotide p 43.3 12 0.00048 14.6 3.6 27 64-90 82-108 (300)
139 3i00_A HIP-I, huntingtin-inter 42.4 7.1 0.0003 16.0 1.1 19 94-112 15-33 (120)
140 1ixd_A Cylindromatosis tumour- 39.9 13 0.00054 14.3 4.9 49 333-396 9-57 (104)
141 2qcp_X Cation efflux system pr 39.4 13 0.00055 14.2 4.7 68 296-372 10-78 (80)
142 2cp6_A Restin; microtubule bin 38.5 14 0.00057 14.1 4.9 27 340-375 37-63 (172)
143 3bz1_I Photosystem II reaction 35.3 15 0.00064 13.8 2.7 23 16-38 3-25 (38)
144 3e0e_A Replication protein A; 34.5 16 0.00066 13.7 4.8 11 338-348 4-14 (97)
145 1z56_A Ligase interacting fact 34.0 16 0.00067 13.7 1.9 16 64-79 47-62 (246)
146 1wi5_A RRP5 protein homolog; S 33.1 17 0.00069 13.6 2.1 52 294-358 23-84 (119)
147 1x79_B RAB GTPase binding effe 32.5 17 0.00071 13.5 2.5 17 96-112 8-24 (112)
148 2pms_C Pneumococcal surface pr 30.5 18 0.00077 13.3 3.2 15 96-110 15-29 (125)
149 2jwy_A Uncharacterized lipopro 28.2 20 0.00083 13.1 7.1 46 330-375 62-107 (168)
150 3mk7_C Cytochrome C oxidase, C 27.6 20 0.00086 13.0 3.9 24 8-31 49-72 (311)
151 3mxu_A Glycine cleavage system 27.1 21 0.00087 12.9 3.9 16 289-304 83-98 (143)
152 2bsg_A Fibritin; viral protein 25.7 5.4 0.00023 16.8 -1.8 19 94-112 54-72 (487)
153 1z1n_X Sixteen heme cytochrome 25.5 12 0.0005 14.5 0.0 25 15-39 6-30 (560)
154 1lpl_A Hypothetical 25.4 kDa p 24.7 23 0.00096 12.6 5.7 49 336-397 6-54 (95)
155 3dm3_A Replication factor A; p 24.4 23 0.00098 12.6 4.6 29 341-370 66-94 (105)
156 3a7l_A H-protein, glycine clea 23.9 24 0.001 12.5 3.9 13 363-375 73-85 (128)
157 1onl_A Glycine cleavage system 23.7 24 0.001 12.5 3.9 12 363-374 72-83 (128)
158 3hgb_A Glycine cleavage system 23.0 25 0.001 12.4 3.9 10 363-372 95-104 (155)
159 3klr_A Glycine cleavage system 23.0 25 0.001 12.4 3.9 16 362-377 67-82 (125)
160 1q8k_A Eukaryotic translation 22.9 25 0.001 12.4 3.5 16 72-89 60-75 (308)
161 1hpc_A H protein of the glycin 22.8 25 0.001 12.4 3.9 13 362-374 71-83 (131)
162 2khj_A 30S ribosomal protein S 22.7 25 0.0011 12.4 4.0 58 294-356 33-90 (109)
163 2hd9_A UPF0310 protein PH1033; 22.1 26 0.0011 12.3 3.4 19 337-355 30-48 (145)
164 1r5b_A Eukaryotic peptide chai 21.2 27 0.0011 12.2 3.8 56 297-355 285-342 (467)
165 2elf_A Protein translation elo 20.8 27 0.0011 12.1 6.0 40 312-352 219-259 (370)
166 2j01_T 50S ribosomal protein L 20.2 28 0.0012 12.0 1.5 36 336-371 16-53 (146)
167 2f23_A Anti-cleavage anti-GREA 20.1 23 0.00098 12.6 0.6 27 272-298 54-80 (156)
No 1
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=99.92 E-value=2.7e-24 Score=178.97 Aligned_cols=259 Identities=15% Similarity=0.236 Sum_probs=164.2
Q ss_pred EEEEEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 06712589997999953873898468886899998578989336978999964899888999874343323321001233
Q gi|254780386|r 37 LLPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSA 116 (440)
Q Consensus 37 ~~~~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~~~~~~l~~l~~~l~~~~~~ 116 (440)
-..+..++.++|+|.|.... .|.++.+|+|.+++|++||.|++||+|++||+.+....+.+.+..+..++++++..+..
T Consensus 13 ~g~i~~tv~~~G~v~~~~~~-~v~a~~~G~V~~v~v~~G~~V~~G~~L~~id~~~~~~~~~~~~a~~~~~~~~l~~a~~~ 91 (341)
T 3fpp_A 13 PGDLQQSVLATGKLDALRKV-DVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAE 91 (341)
T ss_dssp CCCCCCEEEEEEEEEESSEE-ECCCSSCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEEEEEEEEE-EEECCCCEEEEEEECCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98724999999999980899-99844778999999899199889998999881999999999999898876548999878
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 33222114555422356888877655467886543336554200112221122100223210112232222221023333
Q gi|254780386|r 117 LDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQ 196 (440)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 196 (440)
++. .+
T Consensus 92 l~~---------------------------------------------------------------------------a~ 96 (341)
T 3fpp_A 92 LKL---------------------------------------------------------------------------AR 96 (341)
T ss_dssp HHH---------------------------------------------------------------------------HT
T ss_pred HHH---------------------------------------------------------------------------HH
T ss_conf 887---------------------------------------------------------------------------44
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22210122222211100001110024666531012233222222222221000122333211233222122222222122
Q gi|254780386|r 197 KDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADE 276 (440)
Q Consensus 197 ~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~ 276 (440)
.++...+.+...+..++.++.............+.. ....+...
T Consensus 97 ~~~~r~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~l~~~ 140 (341)
T 3fpp_A 97 VTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGT------------------------------------IDAQIKRN 140 (341)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHH------------------------------------HHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHH------------------------------------HHHHHHHH
T ss_conf 332012344203765266665554321023567888------------------------------------77799876
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCC---CCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCEEEEEE
Q ss_conf 23322122222123455541168731212012221244---455421033556504775326223110158983179998
Q gi|254780386|r 277 MSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQ---SQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFP 353 (440)
Q Consensus 277 ~~~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~---G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~i~~~ 353 (440)
..........+.+..+.||++|.+..... ..|..+.+ +.++++|. +.+.+++.+.+++.++.++++|+.|.++++
T Consensus 141 ~~~~~~~~~~~~~~~i~a~~~~~~~~~~~-~~G~~v~~~~~~~~~~~i~-~~~~~~~~~~v~e~~~~~v~~g~~v~i~~~ 218 (341)
T 3fpp_A 141 QASLDTAKTNLDYTRIVAPMAGEVTQITT-LQGQTVIAAQQAPNILTLA-DMSAMLVKAQVSEADVIHLKPGQKAWFTVL 218 (341)
T ss_dssp HHHHTTTTTTTTSSEEECSSSEEEEEESS-CTTCEECCTTSCCCCEEEE-CCSEEEEEEECCGGGSTTCCTTCCCEECCS
T ss_pred HHHHHHHHHCCCCEEEECCCCCEEEEEEE-CCCCEEECCCCCCEEEEEE-CCCCEEEEEEECHHHHHHHHCCCEEEEEEE
T ss_conf 66555555113550684686762778982-5798883378761478992-388537998658999997314753789870
Q ss_pred ECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECEEE
Q ss_conf 12887544399999997133444677765511899999935011256785152377569999922054
Q gi|254780386|r 354 HYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNTT 421 (440)
Q Consensus 354 a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~~~ 421 (440)
.++.. .+.|+|..|+|.+..... ...|.+.+.++. .+..++|||++++.|.++.+.
T Consensus 219 ~~~~~---~~~g~v~~i~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~G~~v~v~i~~~~~~ 274 (341)
T 3fpp_A 219 GDQLT---RYEGQIKDVLPTPEKVND----AIFYYARFEVPN-----PNGLLRLDMTAQVHIQLTDVK 274 (341)
T ss_dssp SSSSS---CBCCCEEEECSSCCBSSS----CBCCEEEEEEEC-----SSSCCCTTCEEEEEEESCCCC
T ss_pred CCCEE---EEEEEEEEEECCEEECCC----EEEEEEEEEECC-----CCCCCCCCEEEEEEEEECCCC
T ss_conf 22101---211599999632230576----199999997259-----765555533899999935758
No 2
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=99.92 E-value=1.3e-24 Score=181.10 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=102.1
Q ss_pred CCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCEEEEEEECCCCCCCEEEE
Q ss_conf 22123455541168731212012221244455421033556504775326223110158983179998128875443999
Q gi|254780386|r 286 TREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIREKKFKA 365 (440)
Q Consensus 286 ~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~i~~~a~~~~~~~~~~G 365 (440)
.+.++.|+||+||+|..+++ ..|++|.+|++|++|+ +.+.+++++.||+.++..|++|++|.++++++|.. .|.|
T Consensus 204 ~~~~~~i~AP~~G~V~~~~v-~~G~~v~~g~~l~~i~-d~~~l~v~~~v~e~~~~~l~~G~~v~v~~~~~~~~---~~~g 278 (407)
T 3h9i_A 204 IQTRFTLKAPIDGVITAFDL-RAGMNIAKDNVVAKIQ-GMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDK---TLTI 278 (407)
T ss_dssp CCCEEEECCSSSEEEECCCC-CSSCCCCTEEEEEEEE-CCSCEEEECEEEHHHHHHCCCTTSEEEECSSSCCS---CCCE
T ss_pred HHCCCEEECCCCCEEEEEEE-ECCCCCCCCCCCCEEE-CCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCC---CCCE
T ss_conf 74283896783550147754-1365258997412010-01220112445277643203584699997578853---1221
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECEEE
Q ss_conf 99997133444677765511899999935011256785152377569999922054
Q gi|254780386|r 366 IIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNTT 421 (440)
Q Consensus 366 ~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~~~ 421 (440)
+|.+|+|.....+ ..|.|++.+++. +..|+|||.+++.|.++.++
T Consensus 279 ~v~~i~p~~d~~t------~t~~vr~~~~n~-----~~~L~pG~~v~v~i~~~~~~ 323 (407)
T 3h9i_A 279 RKWTLLPGVDAAT------RTLQLRLEVDNA-----DEALKPGMNAWLQLNTASEP 323 (407)
T ss_dssp EEEEEEEEEETTT------TEEEEEEEECTT-----SSCCCTTCEEEEEEEEECSC
T ss_pred EEEEECCCEECCC------CEEEEEEEECCC-----CCCCCCCCEEEEEEEECCCC
T ss_conf 5899714033033------206899850377-----77779998899999967755
No 3
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans}
Probab=99.92 E-value=5.5e-24 Score=176.95 Aligned_cols=117 Identities=22% Similarity=0.359 Sum_probs=93.5
Q ss_pred CCCCCCCCCEEEEECCEEECCCCCCCCCCC-CCCCCCCCCCEEEEEEECHHHHHHCCCCCCEEEEEEECCCCCCCEEEEE
Q ss_conf 123455541168731212012221244455-4210335565047753262231101589831799981288754439999
Q gi|254780386|r 288 EQKTILSPIAGTIVYNQSFSSSNYAQQSQP-LMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIREKKFKAI 366 (440)
Q Consensus 288 ~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~-l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~i~~~a~~~~~~~~~~G~ 366 (440)
..+.|+||++|+|...+. ..|+.+.+|.+ |+.+. +.+.+++.+.|++.++.++++|+++.+++++++. ...|+
T Consensus 169 ~~~~i~AP~~G~V~~~~~-~~g~~v~~~~~~l~~i~-d~~~~~~~~~v~~~~~~~i~~G~~v~i~~~~~~~----~~~~~ 242 (359)
T 3lnn_A 169 HILAVRSPINGRVVDLNA-ATGAYWNDTTASLMTVA-DLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDD----PQPGK 242 (359)
T ss_dssp SEEEEECSSCEEEEECCC-CBTCEECCSSCCSEEEE-CCSEEEEEEEECGGGSTTCCTTCEEEEBCSSCSS----CEEEE
T ss_pred CEEEEECCCCCCCEEEEC-CCCCEEEECCCEEEEEE-CCCCCCEEEECCHHHHHHHCCCCEEEEEEECCCC----CCEEE
T ss_conf 349998565775214200-13835763142036874-1555312450579998751069848999956798----51359
Q ss_pred EEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECEEE
Q ss_conf 9997133444677765511899999935011256785152377569999922054
Q gi|254780386|r 367 IEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNTT 421 (440)
Q Consensus 367 V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~~~ 421 (440)
+..|+|.....+ ..|.|++.++. ++..|+|||++++.|..+.+.
T Consensus 243 ~~~i~~~~~~~t------~~~~v~~~~~~-----~~~~l~~G~~v~v~i~~~~~~ 286 (359)
T 3lnn_A 243 VRYVGQILDADT------RTTKVRMVFDN-----PDGRLRPGMFAQATFLSQPHE 286 (359)
T ss_dssp EEECCCCCCTTS------CCEEEEEEEEC-----SSCCCCTTCEEEEEEECCCEE
T ss_pred EEEEEEEEECCC------CEEEEEEEECC-----CCCCCCCCCEEEEEEECCCCC
T ss_conf 999911660565------14899996018-----732114697899998506656
No 4
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli}
Probab=99.91 E-value=3e-24 Score=178.74 Aligned_cols=251 Identities=15% Similarity=0.202 Sum_probs=161.8
Q ss_pred EEEEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 67125899979999538738984688868999985789893369789999648998889998743433233210012333
Q gi|254780386|r 38 LPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSAL 117 (440)
Q Consensus 38 ~~~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~~~~~~l~~l~~~l~~~~~~l 117 (440)
-|+..++...|+|.|.. ...|.|+++|+|.+++|++||.|++||+|++||+...+..+...+.++...+.++...+.
T Consensus 5 ~~~~~~~~~~G~v~~~~-~v~I~a~v~G~V~~i~v~~G~~VkkG~~L~~ld~~~~~~~l~~~~a~l~~a~~~l~~a~~-- 81 (277)
T 2f1m_A 5 EPLQITTELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQL-- 81 (277)
T ss_dssp -----CCEEEEEEECSE-EEEECCSSCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EEEEEEEEEEEEEEEEE-EEEEEEECCEEEEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 46528999889999849-999995457899999879939988999999988589998999999999999865554100--
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 32221145554223568888776554678865433365542001122211221002232101122322222210233332
Q gi|254780386|r 118 DFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQK 197 (440)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 197 (440)
T Consensus 82 -------------------------------------------------------------------------------- 81 (277)
T 2f1m_A 82 -------------------------------------------------------------------------------- 81 (277)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22101222222111000011100246665310122332222222222210001223332112332221222222221222
Q gi|254780386|r 198 DLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEM 277 (440)
Q Consensus 198 el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~~ 277 (440)
++++.+.+...+.....++......+...... +....
T Consensus 82 ~~~r~~~l~~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------l~~a~ 118 (277)
T 2f1m_A 82 TVNRYQKLLGTQYISKQEYDQALADAQQANAA-------------------------------------------VTAAK 118 (277)
T ss_dssp HHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHH-------------------------------------------HHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-------------------------------------------HHHHH
T ss_conf 46788776443653210157777667765657-------------------------------------------99999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCC--CCCCCCCCCCCEEEEEEECHHHHHHCCCCCC--------
Q ss_conf 332212222212345554116873121201222124445--5421033556504775326223110158983--------
Q gi|254780386|r 278 SKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQ--PLMKIVPHSKLTYIRAKVTPKQIQHVKKGYT-------- 347 (440)
Q Consensus 278 ~~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~--~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~-------- 347 (440)
.++..++..++++.|+||++|+|...+. ..|+++.+|. +++.+. +...++|++.+++.++..++.|+.
T Consensus 119 a~l~~~~~~l~~~~i~ap~~g~v~~~~~-~~g~~~~~~~~~~l~~i~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (277)
T 2f1m_A 119 AAVETARINLAYTKVTSPISGRIGKSNV-TEGALVQNGQATALATVQ-QLDPIYVDVTQSSNDMMRLKQELANGTLKQEN 196 (277)
T ss_dssp HHHHHHHHHHHTTEECCSSCEEECCCSS-CBTCEECTTCSSCSEEEE-ECSSEEEEEEEETTTC----------------
T ss_pred HHHHHHHHHHCCEEEECCCCCEEEEEEC-CCCCEECCCCCEEEEEEE-CCCEEEEEEEECHHHHHHHHHHHCCCCCCCCC
T ss_conf 9987776520224997053417988751-469777678860799994-48569999998889999875301122000147
Q ss_pred --EEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECEEEHHHH
Q ss_conf --179998128875443999999971334446777655118999999350112567851523775699999220547999
Q gi|254780386|r 348 --ATVRFPHYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNTTLAQE 425 (440)
Q Consensus 348 --v~i~~~a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~~~~~~~ 425 (440)
+.+.+.+.+... ..++|+|..|++.....+ ..|.|++.+++ ++..|+|||++++.|.++.++- .
T Consensus 197 ~~~~v~~~~~~~~~-~~~~g~v~~i~~~~~~~t------~~~~v~i~~~~-----~~~~L~~G~~~~v~i~~~~~~~--~ 262 (277)
T 2f1m_A 197 GKAKVSLITSDGIK-FPQDGTLEFSDVTVDQTT------GSITLRAIFPN-----PDHTMMPGMFVRARLEEGLNPN--A 262 (277)
T ss_dssp -CCCEEEECSSSCB-CSSCBEESSSCCEECSSS------CEEEEEEEECC-----TTCCCCSSCEEEEEEC---------
T ss_pred CCCEEEEECCCCCC-EEEEEEEEEEECEECCCC------EEEEEEEEEEC-----CCCCCCCCCEEEEEEEECCCCC--E
T ss_conf 86169999468772-025799999705083684------69999999839-----9885689999999999678499--4
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780386|r 426 IIHPI 430 (440)
Q Consensus 426 ~~~p~ 430 (440)
|+-|.
T Consensus 263 l~VP~ 267 (277)
T 2f1m_A 263 ILVPQ 267 (277)
T ss_dssp -----
T ss_pred EEECH
T ss_conf 99897
No 5
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=99.68 E-value=4.1e-17 Score=131.11 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=61.0
Q ss_pred EEEEEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 067125899979999538738984688868999985789893369789999648998889998743433233210
Q gi|254780386|r 37 LLPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHID 111 (440)
Q Consensus 37 ~~~~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~~~~~~l~~l~~~l~ 111 (440)
-.++..++..+|+|.|. ....|.++++|+|.+++|++||.|++||+|++||+.+.+..+...+.++...+.+++
T Consensus 25 ~~~~~~~~~~~G~v~~~-~~~~v~~~v~G~V~~v~V~~Gd~VkkGd~L~~ld~~~~~~~l~~a~~~l~~a~~~~~ 98 (369)
T 1vf7_A 25 AQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQ 98 (369)
T ss_dssp ----CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEEEEEE-EEEEEEEECCEEEEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86214799999999970-899999545789999988995998899989998868999899999999998664234
No 6
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=99.40 E-value=1.1e-13 Score=108.24 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCEEEEECCEEECCCCCCCCCC-CCCCCCCCCCCEEEEEE
Q ss_conf 2212345554116873121201222124445-54210335565047753
Q gi|254780386|r 286 TREQKTILSPIAGTIVYNQSFSSSNYAQQSQ-PLMKIVPHSKLTYIRAK 333 (440)
Q Consensus 286 ~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~-~l~~Ivp~~~~l~v~~~ 333 (440)
+|+++.|+||+||+|...++ .+|++|.+|+ +|++|+ +.+++||++.
T Consensus 64 ~L~~~~I~AP~~G~V~~~~~-~~G~~V~~g~~~l~~I~-~~d~l~ve~s 110 (116)
T 2k32_A 64 TLDHTEIKAPFDGTIGDALV-NIGDYVSASTTELVRVT-NLNPIYADGS 110 (116)
T ss_dssp TTTEEEEECSSSEEECCCSC-CTTCEECTTTSCCEEEE-CSCTHHHHSS
T ss_pred HHCCCEEECCCCEEEEEEEC-CCCCEECCCCCEEEEEE-CCCEEEEEEE
T ss_conf 55178998898879998987-99998889995489997-7980999997
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3dtp_B 3dtp_A
Probab=97.35 E-value=8.7e-05 Score=48.81 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCC
Q ss_conf 899888999874343323321001233332221145554223568888776554678865433--365542001122211
Q gi|254780386|r 90 IETTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKV--FNYGISSVYRSLKMK 167 (440)
Q Consensus 90 ~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 167 (440)
.+........+..+..+..++.........+..+...++..+.....++............+. ....+..+...+...
T Consensus 916 ~~~~~~~~ele~~l~~l~~~l~~~~~~~~eL~~e~~~Le~ei~eLk~qlee~e~~~~~Le~e~~~~e~~l~~L~~el~~l 995 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------------------HHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999975666557888998744799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 22100223210112232222221023333222101222222111000011100246665310122332222222222210
Q gi|254780386|r 168 LTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINEL 247 (440)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~ 247 (440)
......+......++.....+...+...+.....+.....+......++............++......+......+.+.
T Consensus 996 e~~~~~L~~e~~~Lee~l~~l~~~l~~~ee~~~~L~~~~~kle~~i~eLe~~le~~e~~~~ele~~~~~Le~el~~lqe~ 1075 (1184)
T 1i84_S 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075 (1184)
T ss_dssp ---------HC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00122333211233---222122222222122233221222221234
Q gi|254780386|r 248 YDEANLEFANYLKE---ISRDLEQNQRTFADEMSKLTILEKTREQKT 291 (440)
Q Consensus 248 ~~~~~~~~~~~~~e---~~~~l~e~~~~l~~~~~~l~~l~~~l~~~~ 291 (440)
..++..++.....+ ...++......+.+...+...+..++....
T Consensus 1076 l~ele~ei~~l~~~l~~~e~El~~l~~~lee~~~~~~~l~kei~eLe 1122 (1184)
T 1i84_S 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122 (1184)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999
No 8
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=97.24 E-value=0.00058 Score=43.31 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=33.9
Q ss_pred EEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEEC
Q ss_conf 799995387389846888689999857898933697899996
Q gi|254780386|r 47 SGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88 (440)
Q Consensus 47 ~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld 88 (440)
-+.+....-...|.|+.+|+|.+++|++||.|..||+|+.++
T Consensus 39 l~~iEamK~~~~i~a~~~G~V~~i~v~~G~~V~~G~~L~~ie 80 (80)
T 1bdo_A 39 LCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred EEEEEECCCHHHCCCCCCEEEEEEEECCCCEECCCCEEEEEC
T ss_conf 999997620120659999899899868979989999999979
No 9
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=97.21 E-value=0.00063 Score=43.08 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=23.8
Q ss_pred EEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECH
Q ss_conf 99953873898468886899998578989336978999964
Q gi|254780386|r 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89 (440)
Q Consensus 49 ~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~ 89 (440)
.+........|.||.+|+|.++++++||.|+.||+|+.|.+
T Consensus 29 ~ie~~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 29 ILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp EEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred EEECCCCCCCEECCCCEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 99817655305889798999997789799899999999947
No 10
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=97.14 E-value=0.00084 Score=42.23 Aligned_cols=39 Identities=28% Similarity=0.482 Sum_probs=17.0
Q ss_pred EEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEE
Q ss_conf 999538738984688868999985789893369789999
Q gi|254780386|r 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTF 87 (440)
Q Consensus 49 ~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~l 87 (440)
.+........|.||.+|+|.+++|++||.|+.||+|+++
T Consensus 35 ~iE~~K~~~~i~ap~~G~I~~i~v~~G~~V~~G~~L~~I 73 (74)
T 2d5d_A 35 VLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73 (74)
T ss_dssp EEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEE
T ss_pred EEEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEE
T ss_conf 999356126998799989989994895998999999993
No 11
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=97.08 E-value=0.00075 Score=42.58 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=34.9
Q ss_pred EEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECH
Q ss_conf 999953873898468886899998578989336978999964
Q gi|254780386|r 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89 (440)
Q Consensus 48 G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~ 89 (440)
..+....-...|.||.+|+|.+++|++||.|+.|++|+.++.
T Consensus 39 ~~iEt~K~~~ei~a~~~G~I~~i~v~eG~~V~~G~~L~~Ie~ 80 (93)
T 1k8m_A 39 CEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp EEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred EEEECCCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 999837728978838899999995389999889999999977
No 12
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=97.07 E-value=0.00048 Score=43.84 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=19.9
Q ss_pred CCCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 234555411687312120122212444554210
Q gi|254780386|r 289 QKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 289 ~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
...|+||+.|+|+.+.+ ..|+.|..|++|+.|
T Consensus 8 ~~~i~ap~~G~i~~~~V-~~Gd~V~~Gq~l~~i 39 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILV-KEGDTVKAGQTVLVL 39 (77)
T ss_dssp SSEEEBSSSCEEEEECC-CTTCEECTTSEEEEE
T ss_pred CCEEECCCCEEEEEEEC-CCCCEECCCCEEEEE
T ss_conf 99698999959999983-898998699989999
No 13
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=97.05 E-value=0.0004 Score=44.37 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=13.7
Q ss_pred EECCCCCEEEEEECCCCCEEECCCEEEEE
Q ss_conf 84688868999985789893369789999
Q gi|254780386|r 59 IKSPFSGIIKKFQVENGSQILQGTPLLTF 87 (440)
Q Consensus 59 I~s~~~G~V~~i~VkeGd~VkkGq~L~~l 87 (440)
|.+|.+|.|.+++|++||.|++||+|+.+
T Consensus 2 v~~~m~G~i~~~~v~~Gd~V~~g~~l~~i 30 (72)
T 1z6h_A 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAIL 30 (72)
T ss_dssp EECCSSEEEEEECCCTTCEECTTCEEEEE
T ss_pred EECCCCEEEEEEECCCCCEECCCCEEEEE
T ss_conf 80538789999992798999079899999
No 14
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=97.03 E-value=0.00053 Score=43.59 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.4
Q ss_pred CCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 1234555411687312120122212444554210
Q gi|254780386|r 288 EQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 288 ~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
....|+||+.|+|..+.+ ..|+.|.+|++|+.|
T Consensus 611 ~~g~l~APMPG~Vv~v~V-~~Gd~V~aGq~L~VL 643 (681)
T 3n6r_A 611 TSKMLLCPMPGLIVKVDV-EVGQEVQEGQALCTI 643 (681)
T ss_dssp CCSEEECCSCEEEEEECC-CTTCEECTTCEEEEE
T ss_pred CCCEEECCCCCEEEEEEC-CCCCEECCCCEEEEE
T ss_conf 899897899975999945-994998898989999
No 15
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=97.02 E-value=0.00011 Score=48.10 Aligned_cols=198 Identities=7% Similarity=-0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89988899987434332332100123333222114555422356888877655467886543336554200112221122
Q gi|254780386|r 90 IETTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLT 169 (440)
Q Consensus 90 ~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (440)
.+....+.....++..+...+...+..++.+...+......+......+............. ....+......+.....
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 409 (551)
T 2b5u_A 331 NQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQM-AGLKAQRAQTDVNNKQA 409 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 99988789999999999999999999999999999999999999999999999999999999-99999999999999999
Q ss_pred CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10022321011223222222102333322210122222211100001110024666531012233222222222221000
Q gi|254780386|r 170 RMRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYD 249 (440)
Q Consensus 170 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~ 249 (440)
.+.........+......+...+...+.++......+++......+.............+....................
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~e~~k~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (551)
T 2b5u_A 410 AFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKGFKDYGHDYHPAPKTENIKGLGDLKPGIPKTPKQ 489 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHTTTSCCCCCGGGCCSSCCCEEECCCSBCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 122333211233222122222222122233221222221
Q gi|254780386|r 250 EANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTRE 288 (440)
Q Consensus 250 ~~~~~~~~~~~e~~~~l~e~~~~l~~~~~~l~~l~~~l~ 288 (440)
....++.....+....+.+.+.+..+++.........+.
T Consensus 490 ~~~~~~~~~~~e~~~~~~ele~~~~eLE~~~~~~~~~l~ 528 (551)
T 2b5u_A 490 NGGGKRKRWTGDKGRKIYEWDSQHGELEGYRASDGQHLG 528 (551)
T ss_dssp SSSCBCCEEEETTTTEEEEEETTTTEEEEEETTTCBEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999988
No 16
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=96.99 E-value=0.0015 Score=40.64 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=35.5
Q ss_pred EEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHH
Q ss_conf 9999538738984688868999985789893369789999648
Q gi|254780386|r 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 48 G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
..+....-...|.|+.+|+|.+++|++||.|..||+|+.++..
T Consensus 33 ~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~ 75 (79)
T 1iyu_A 33 VVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred EEEEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECC
T ss_conf 9999567158998798999999935896998999999999478
No 17
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=96.94 E-value=0.0015 Score=40.56 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=27.9
Q ss_pred CCCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 234555411687312120122212444554210
Q gi|254780386|r 289 QKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 289 ~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
-..|.||++|.||.+.+ ++|+.|.+|++|+-|
T Consensus 1077 ~~~V~Ap~~GnVwkv~V-~~Gd~V~~Gd~l~Il 1108 (1150)
T 3hbl_A 1077 PSHIGAQMPGSVTEVKV-SVGETVKANQPLLIT 1108 (1150)
T ss_dssp SSEEECSSSEEEEEECC-CTTCEECTTCEEEEE
T ss_pred CCEEECCCCEEEEEEEE-CCCCEECCCCEEEEE
T ss_conf 97770689847899980-899997999989999
No 18
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.94 E-value=0.00043 Score=44.22 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=20.7
Q ss_pred CCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 34555411687312120122212444554210
Q gi|254780386|r 290 KTILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 290 ~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
+.|+||+.|.|..+.+ +.|+.|.+|++|+.|
T Consensus 6 ~~v~ap~~G~i~~~~V-~~Gd~V~~G~~l~~i 36 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTV-EDGGHVEAGSSYAEM 36 (84)
T ss_dssp TEECCSSSCCEEEESS-CTTEEECTTCEEEEE
T ss_pred CEEECCCCEEEEEEEE-CCCCEECCCCEEEEE
T ss_conf 8798898859999995-798999179869999
No 19
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.91 E-value=0.00083 Score=42.29 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=15.7
Q ss_pred CCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 34555411687312120122212444554210
Q gi|254780386|r 290 KTILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 290 ~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
..|+||+.|+|..+.+ ..|+.|..|++|+.|
T Consensus 6 ~~v~ap~~G~v~~~~v-~~Gd~V~~g~~l~~i 36 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLV-RVGDRVRVGQGLLVL 36 (74)
T ss_dssp CEEECSSCEEEEEECC-CTTCEECTTCEEEEE
T ss_pred CEEECCCCCEEEEEEC-CCCCEEECCCEEEEE
T ss_conf 9997999979999994-899999389889999
No 20
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=96.89 E-value=0.00098 Score=41.79 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 34555411687312120122212444554210
Q gi|254780386|r 290 KTILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 290 ~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
-.+.||+.|+|..+.+ ..|+.|..|++|+.|
T Consensus 15 ~~~~aPm~G~i~~~~v-~~Gd~V~~g~~l~~v 45 (99)
T 2ejm_A 15 GGPLAPMTGTIEKVFV-KAGDKVKAGDSLMVM 45 (99)
T ss_dssp SSCBCSSSEEEEEECC-CTTEEECSSCEEEEE
T ss_pred CCEECCCCEEEEEEEC-CCCCEECCCCEEEEE
T ss_conf 9233889969999982-898998689989999
No 21
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.00077 Score=42.50 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=26.9
Q ss_pred CCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCC
Q ss_conf 12345554116873121201222124445542103
Q gi|254780386|r 288 EQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIV 322 (440)
Q Consensus 288 ~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Iv 322 (440)
+-+.|+||+.|.|..+.+ ..|+.|..|++|+.|-
T Consensus 16 dp~~v~ap~~G~i~~~~V-~~Gd~V~~Gd~l~~iE 49 (100)
T 2dn8_A 16 DPTVLRSPSAGKLTQYTV-EDGGHVEAGSSYAEME 49 (100)
T ss_dssp CTTEEECSSCEEEEEESS-CTTEEECTTCEEEEEE
T ss_pred CCCEEECCCCEEEEEEEE-CCCCEECCCCEEEEEE
T ss_conf 998887899869999993-7989985899799998
No 22
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=96.79 E-value=0.0022 Score=39.51 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=36.5
Q ss_pred EEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECH
Q ss_conf 999953873898468886899998578989336978999964
Q gi|254780386|r 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89 (440)
Q Consensus 48 G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~ 89 (440)
..+....-...|.||.+|+|.++++++||.|+.|++|+.++.
T Consensus 36 ~~vEtdK~~~ei~ap~~G~v~~i~v~~G~~v~~G~~l~~i~~ 77 (79)
T 1ghj_A 36 VDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred EEEECCCEEEEEEECCCEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 999958658999834689999998489999789999999947
No 23
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.78 E-value=0.002 Score=39.77 Aligned_cols=34 Identities=29% Similarity=0.556 Sum_probs=25.9
Q ss_pred EEEEECCCCCEEEEEECCCCCEEECCCEEEEECH
Q ss_conf 3898468886899998578989336978999964
Q gi|254780386|r 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89 (440)
Q Consensus 56 ~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~ 89 (440)
...|.||.+|+|.+++|++||.|++||+|+.++.
T Consensus 8 ~~~i~ap~~G~i~~~~V~~Gd~V~~Gq~l~~iEa 41 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEA 41 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEE
T ss_pred CCEEECCCCEEEEEEECCCCCEECCCCEEEEEEE
T ss_conf 9969899995999998389899869998999994
No 24
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens}
Probab=96.75 E-value=0.00028 Score=45.47 Aligned_cols=30 Identities=23% Similarity=0.606 Sum_probs=14.4
Q ss_pred EECCCCCEEEEEECCCCCEEECCCEEEEEC
Q ss_conf 846888689999857898933697899996
Q gi|254780386|r 59 IKSPFSGIIKKFQVENGSQILQGTPLLTFE 88 (440)
Q Consensus 59 I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld 88 (440)
|.+|.+|.|.+++|++||.|++||+|+.++
T Consensus 28 i~aP~~G~V~~i~V~~Gd~V~~G~~l~~iE 57 (94)
T 2jku_A 28 LRSPMPGVVVAVSVKPGDAVAEGQEICVIE 57 (94)
T ss_dssp CCCSSSCEEEEECCCTTCCCCTTCCCEEEE
T ss_pred EECCCCCEEEEEECCCCCEECCCCEEEEEE
T ss_conf 989999689899818999995898799998
No 25
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=96.68 E-value=0.0013 Score=41.01 Aligned_cols=41 Identities=24% Similarity=0.634 Sum_probs=34.5
Q ss_pred EEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECH
Q ss_conf 99953873898468886899998578989336978999964
Q gi|254780386|r 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89 (440)
Q Consensus 49 ~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~ 89 (440)
.+....-...|.|+.+|+|.+++|++||.|+.|++|+.++.
T Consensus 36 ~iEt~K~~~~i~a~~~G~v~~i~v~~G~~v~~G~~l~~ie~ 76 (80)
T 1qjo_A 36 TVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp EEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred EEEECCCCEEEECCCCEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 99907545199846527999999589899589999999964
No 26
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens}
Probab=96.68 E-value=0.00044 Score=44.10 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=29.0
Q ss_pred CCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCC
Q ss_conf 212345554116873121201222124445542103
Q gi|254780386|r 287 REQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIV 322 (440)
Q Consensus 287 l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Iv 322 (440)
.....|+||+.|+|..+.+ .+|+.|..|++|+.|-
T Consensus 23 ~~~~~i~aP~~G~V~~i~V-~~Gd~V~~G~~l~~iE 57 (94)
T 2jku_A 23 MTSSVLRSPMPGVVVAVSV-KPGDAVAEGQEICVIE 57 (94)
T ss_dssp -CCCCCCCSSSCEEEEECC-CTTCCCCTTCCCEEEE
T ss_pred CCCCEEECCCCCEEEEEEC-CCCCEECCCCEEEEEE
T ss_conf 8689898999968989981-8999995898799998
No 27
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=41.59 Aligned_cols=42 Identities=33% Similarity=0.438 Sum_probs=30.5
Q ss_pred EEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECH
Q ss_conf 999953873898468886899998578989336978999964
Q gi|254780386|r 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89 (440)
Q Consensus 48 G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~ 89 (440)
..|....-...|.++.+|+|.+++|++||.|..|++|+.|+.
T Consensus 43 ~~vEt~K~~~~i~a~~~G~V~~i~v~~Gd~V~~G~~L~~i~~ 84 (99)
T 2ejm_A 43 MVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE 84 (99)
T ss_dssp EEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred EEEECCCCCEEEECCCCCEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 999737623799847578087997289899689998999963
No 28
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=96.44 E-value=0.0012 Score=41.25 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=24.9
Q ss_pred CCCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 234555411687312120122212444554210
Q gi|254780386|r 289 QKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 289 ~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
-..|.||+.|.|+.+.+ ++|+.|..|++|+.|
T Consensus 649 ~~~V~APmpG~V~~v~V-~~Gd~V~~G~~l~vl 680 (718)
T 3bg3_A 649 KGQIGAPMPGKVIDIKV-VAGAKVAKGQPLCVL 680 (718)
T ss_dssp SSCEECSSCEEEEEECS-CTTCCBCTTCCCEEE
T ss_pred CCEECCCCCCEEEEEEE-CCCCEECCCCEEEEE
T ss_conf 88433899943799996-999987999999999
No 29
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=96.42 E-value=0.0019 Score=39.86 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=28.1
Q ss_pred CCCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 234555411687312120122212444554210
Q gi|254780386|r 289 QKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 289 ~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
-..|.||++|.||.+.+ ++|+.|.+|++|+-|
T Consensus 1095 ~~~V~AP~~GnVWKV~V-k~GD~VkaGq~L~IL 1126 (1165)
T 2qf7_A 1095 AAHVGAPMPGVISRVFV-SSGQAVNAGDVLVSI 1126 (1165)
T ss_dssp TTEEECSSCEEEEEECC-SSCCCC---CEEEEE
T ss_pred CCEECCCCCEEEEEEEE-CCCCEECCCCEEEEE
T ss_conf 88776899968999997-999997999989999
No 30
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=96.41 E-value=0.0027 Score=38.83 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=16.3
Q ss_pred ECHHHHHHCCCCCCEEEEEEECCCCC--CCEEEEEEEEEE
Q ss_conf 26223110158983179998128875--443999999971
Q gi|254780386|r 334 VTPKQIQHVKKGYTATVRFPHYADIR--EKKFKAIIEKID 371 (440)
Q Consensus 334 v~~~di~~i~~Gq~v~i~~~a~~~~~--~~~~~G~V~~Is 371 (440)
|....-..|+.||.+-| +.|..-.. .-...|+|..|-
T Consensus 1091 v~V~~Gd~V~~Gd~l~I-lEAMKME~~V~Ap~~G~V~~I~ 1129 (1150)
T 3hbl_A 1091 VKVSVGETVKANQPLLI-TEAMKMETTIQAPFDGVIKQVT 1129 (1150)
T ss_dssp ECCCTTCEECTTCEEEE-EESSSCEEEEECSSSEEEEEEC
T ss_pred EEECCCCEECCCCEEEE-EEHHCCCCCCCCCCCEEEEEEE
T ss_conf 98089999799998999-9652086715389991897998
No 31
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=96.40 E-value=0.0011 Score=41.49 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=17.2
Q ss_pred CCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 4555411687312120122212444554210
Q gi|254780386|r 291 TILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 291 ~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
+|++|..|.|..+.+ ..|+.|..|++|+.|
T Consensus 4 ~v~~P~~~~I~~~~v-~~Gd~V~~gd~l~~i 33 (85)
T 2k7v_A 4 EVNVPDIVEVTEVMV-KVGDKVAAEQSLITV 33 (85)
T ss_dssp CCCCCSCCCCCSCCC-SSSCCCCCSSSCCCC
T ss_pred EEECCCCEEEEEEEE-CCCCEECCCCEEEEE
T ss_conf 797999788989992-799999179989999
No 32
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=96.35 E-value=0.002 Score=39.66 Aligned_cols=13 Identities=23% Similarity=0.079 Sum_probs=5.1
Q ss_pred HHHHCCCCCCEEE
Q ss_conf 3110158983179
Q gi|254780386|r 338 QIQHVKKGYTATV 350 (440)
Q Consensus 338 di~~i~~Gq~v~i 350 (440)
.-..|+.||.+-|
T Consensus 1113 ~GD~VkaGq~L~I 1125 (1165)
T 2qf7_A 1113 SGQAVNAGDVLVS 1125 (1165)
T ss_dssp SCCCC---CEEEE
T ss_pred CCCEECCCCEEEE
T ss_conf 9999799998999
No 33
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.0082 Score=35.63 Aligned_cols=31 Identities=23% Similarity=0.560 Sum_probs=19.7
Q ss_pred EEEECCCCCEEEEEECCCCCEEECCCEEEEE
Q ss_conf 8984688868999985789893369789999
Q gi|254780386|r 57 VEIKSPFSGIIKKFQVENGSQILQGTPLLTF 87 (440)
Q Consensus 57 ~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~l 87 (440)
..|.+|..|+|.+++|++||.|++||+|+.+
T Consensus 18 ~~v~ap~~G~i~~~~V~~Gd~V~~Gd~l~~i 48 (100)
T 2dn8_A 18 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEM 48 (100)
T ss_dssp TEEECSSCEEEEEESSCTTEEECTTCEEEEE
T ss_pred CEEECCCCEEEEEEEECCCCEECCCCEEEEE
T ss_conf 8887899869999993798998589979999
No 34
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=96.26 E-value=0.001 Score=41.65 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=10.7
Q ss_pred CCCCCCEEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 158983179998128875443999999971
Q gi|254780386|r 342 VKKGYTATVRFPHYADIREKKFKAIIEKID 371 (440)
Q Consensus 342 i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is 371 (440)
.++|..+.|.++ ....+.-+...|+
T Consensus 582 ~~~gee~~v~i~-----~Gk~~~i~~~~i~ 606 (718)
T 3bg3_A 582 PKIAEEFEVELE-----RGKTLHIKALAVS 606 (718)
T ss_dssp CCBTCEEEEECT-----TSCEEEEEEEEEE
T ss_pred CCCCCEEEEEEC-----CCCEEEEEEECCC
T ss_conf 887845899824-----8936899852136
No 35
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.19 E-value=0.0038 Score=37.90 Aligned_cols=31 Identities=26% Similarity=0.598 Sum_probs=18.9
Q ss_pred EEECCCCCEEEEEECCCCCEEECCCEEEEEC
Q ss_conf 9846888689999857898933697899996
Q gi|254780386|r 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88 (440)
Q Consensus 58 ~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld 88 (440)
.|.||.+|+|.+++|++||.|++||+|+.++
T Consensus 7 ~v~ap~~G~i~~~~V~~Gd~V~~G~~l~~iE 37 (84)
T 2kcc_A 7 VLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 37 (84)
T ss_dssp EECCSSSCCEEEESSCTTEEECTTCEEEEEE
T ss_pred EEECCCCEEEEEEEECCCCEECCCCEEEEEE
T ss_conf 7988988599999957989991798699998
No 36
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=96.06 E-value=0.0019 Score=39.88 Aligned_cols=39 Identities=18% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEEC
Q ss_conf 995387389846888689999857898933697899996
Q gi|254780386|r 50 ILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88 (440)
Q Consensus 50 i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld 88 (440)
+....-...|.|+.+|+|.+++|++||.|..|++|+.++
T Consensus 38 iEt~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie 76 (81)
T 1gjx_A 38 LETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVE 76 (81)
T ss_dssp EECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEEC
T ss_pred EEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEE
T ss_conf 993883799980554799999828989988999999994
No 37
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=95.69 E-value=0.03 Score=31.88 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=6.3
Q ss_pred CCCCCCEEEEECCE
Q ss_conf 45554116873121
Q gi|254780386|r 291 TILSPIAGTIVYNQ 304 (440)
Q Consensus 291 ~I~AP~~G~V~~l~ 304 (440)
.|.||++|.+..+.
T Consensus 9 ~i~APv~G~vi~l~ 22 (154)
T 2gpr_A 9 KVLAPCDGTIITLD 22 (154)
T ss_dssp EEECSSSEEEECGG
T ss_pred EEEECCCCEEEECC
T ss_conf 99964773898813
No 38
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.68 E-value=0.0046 Score=37.31 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=23.7
Q ss_pred CCCCCCCCCEEEEECC------EEECCCCCCCCCCCCCCC
Q ss_conf 1234555411687312------120122212444554210
Q gi|254780386|r 288 EQKTILSPIAGTIVYN------QSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 288 ~~~~I~AP~~G~V~~l------~~~~~G~~v~~G~~l~~I 321 (440)
.-..|+||..|+++.. .+...|+.|..|++|+.|
T Consensus 3 sg~~V~aPm~G~~~~~~~p~~~~~V~~Gd~V~~g~~l~~i 42 (80)
T 1bdo_A 3 SGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIV 42 (80)
T ss_dssp CSEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEE
T ss_pred CCCEEECCCCEEEEECCCCCCCCEECCCCEEECCCEEEEE
T ss_conf 8999858987799814699998532689999668789999
No 39
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=95.57 E-value=0.0086 Score=35.50 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=12.5
Q ss_pred CEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 11687312120122212444554210
Q gi|254780386|r 296 IAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 296 ~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
.+|+|....+ ..|+.|..|++|+.|
T Consensus 11 ~~g~i~~~~v-~~Gd~V~~G~~l~~i 35 (79)
T 1iyu_A 11 GDGEVIELLV-KTGDLIEVEQGLVVL 35 (79)
T ss_dssp SEEEEEEECC-CTTCBCCSSSEEEEE
T ss_pred CCEEEEEEEC-CCCCEECCCCEEEEE
T ss_conf 9689999982-797999089989999
No 40
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=95.54 E-value=0.02 Score=33.08 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=27.6
Q ss_pred EEEECCCEEEEECCCCCEEEEEECCCCC-EEECCCEEEEECH
Q ss_conf 9995387389846888689999857898-9336978999964
Q gi|254780386|r 49 EILNEDNVVEIKSPFSGIIKKFQVENGS-QILQGTPLLTFED 89 (440)
Q Consensus 49 ~i~~~~~~~~I~s~~~G~V~~i~VkeGd-~VkkGq~L~~ld~ 89 (440)
.+........|.|+.+|+|.+++|.+|| .|.-|++|+.+.+
T Consensus 41 evEtdK~~~ev~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~ 82 (87)
T 3crk_C 41 EIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred EEEECCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEEC
T ss_conf 999077888687189999999997789829759998999956
No 41
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=95.48 E-value=0.019 Score=33.14 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=20.2
Q ss_pred EEEECCCEEEEECCCCCEEEEEECCCCC-EEECCCEEEEEC
Q ss_conf 9995387389846888689999857898-933697899996
Q gi|254780386|r 49 EILNEDNVVEIKSPFSGIIKKFQVENGS-QILQGTPLLTFE 88 (440)
Q Consensus 49 ~i~~~~~~~~I~s~~~G~V~~i~VkeGd-~VkkGq~L~~ld 88 (440)
.|....-...|.|+.+|+|.+++|++|| .|+-|++|+.+.
T Consensus 63 evETDKa~~EI~A~~~G~l~~i~v~eGd~~v~vG~~Ia~I~ 103 (128)
T 1y8o_B 63 EIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 103 (128)
T ss_dssp EEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred EEECCCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEE
T ss_conf 99828657988426787999999667983881899899993
No 42
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.42 E-value=0.016 Score=33.69 Aligned_cols=40 Identities=33% Similarity=0.426 Sum_probs=23.0
Q ss_pred EEEECCCEEEEECCCCCEEEEEECCCCC-EEECCCEEEEEC
Q ss_conf 9995387389846888689999857898-933697899996
Q gi|254780386|r 49 EILNEDNVVEIKSPFSGIIKKFQVENGS-QILQGTPLLTFE 88 (440)
Q Consensus 49 ~i~~~~~~~~I~s~~~G~V~~i~VkeGd-~VkkGq~L~~ld 88 (440)
.|....-...|.|+.+|+|.+++|++|| .|+-|++|+.+.
T Consensus 43 evEtdK~~~ev~a~~~G~l~~i~v~~Gd~~v~vG~~i~~i~ 83 (98)
T 2dnc_A 43 EIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83 (98)
T ss_dssp EEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred EEECCCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEE
T ss_conf 99858389999748998999999768982977999899990
No 43
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.38 E-value=0.046 Score=30.67 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=10.9
Q ss_pred CCCCCCCCEEEEECCEE
Q ss_conf 23455541168731212
Q gi|254780386|r 289 QKTILSPIAGTIVYNQS 305 (440)
Q Consensus 289 ~~~I~AP~~G~V~~l~~ 305 (440)
...|.||++|.+..+..
T Consensus 12 ~i~v~APv~G~vi~L~~ 28 (161)
T 1f3z_A 12 TIEIIAPLSGEIVNIED 28 (161)
T ss_dssp CEEEECSSCEEEEEGGG
T ss_pred CEEEEECCCCEEEECCC
T ss_conf 68999636727988330
No 44
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=95.37 E-value=0.019 Score=33.13 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=33.0
Q ss_pred EEEEECCCEEEEECCCCCEEEEEECCCCCE-EECCCEEEEECHH
Q ss_conf 999953873898468886899998578989-3369789999648
Q gi|254780386|r 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQ-ILQGTPLLTFEDI 90 (440)
Q Consensus 48 G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~-VkkGq~L~~ld~~ 90 (440)
..|....-...|.|+.+|+|.+++|++||. |+-|++|+.+...
T Consensus 42 ~evETdKa~~ev~a~~~G~l~~ilv~eGd~~v~vG~~ia~i~~~ 85 (108)
T 2dne_A 42 AEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGK 85 (108)
T ss_dssp EEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred EEEECCCEEEEEEECCCEEEEEEEECCCCCEECCCCEEEEEECC
T ss_conf 99983857689860789699999966798487699989999248
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.94 E-value=0.0054 Score=36.86 Aligned_cols=10 Identities=30% Similarity=0.302 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q ss_conf 9988899987
Q gi|254780386|r 91 ETTDLIDLKK 100 (440)
Q Consensus 91 ~~~~~l~~~~ 100 (440)
+.+..+++.+
T Consensus 50 ~~~~~~~~~~ 59 (562)
T 3ghg_A 50 RMKGLIDEVN 59 (562)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 1567898865
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.88 E-value=0.012 Score=34.48 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8889998743433233
Q gi|254780386|r 93 TDLIDLKKVSIKNLRC 108 (440)
Q Consensus 93 ~~~l~~~~~~l~~l~~ 108 (440)
...++.++..+.++..
T Consensus 63 ~~~i~~l~~~~~~~~~ 78 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999999999998
No 47
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=94.77 E-value=0.014 Score=34.15 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=13.4
Q ss_pred CCEEEEEECCCCCEEECCCEEEEEC
Q ss_conf 8689999857898933697899996
Q gi|254780386|r 64 SGIIKKFQVENGSQILQGTPLLTFE 88 (440)
Q Consensus 64 ~G~V~~i~VkeGd~VkkGq~L~~ld 88 (440)
.|.|.+|+|++||.|++||+|+.++
T Consensus 21 eg~i~~W~v~~Gd~V~~gd~l~evE 45 (108)
T 2dne_A 21 AGTIARWEKKEGDKINEGDLIAEVE 45 (108)
T ss_dssp EEEEEECSSCTTCEECTTSEEEEEE
T ss_pred EEEEEEEEECCCCEEECCCEEEEEE
T ss_conf 6999899936999980799899998
No 48
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=94.74 E-value=0.0023 Score=39.37 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=12.4
Q ss_pred CCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 34555411687312120122212444554210
Q gi|254780386|r 290 KTILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 290 ~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
..|.||.+|+|..+.+ ..|+.|.+|++|+.|
T Consensus 46 ~ei~a~~~G~l~~i~v-~~G~~v~vG~~l~~i 76 (80)
T 1pmr_A 46 LEVPASADGILDAVLE-DEGTTVTSRQILGRL 76 (80)
T ss_dssp CCCBCCSBCCCCBCTT-CTTCEECSSSEEEBC
T ss_pred EEEEECCCEEEEEEEE-CCCCEECCCCEEEEE
T ss_conf 9987036899999986-899998799999999
No 49
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=94.71 E-value=0.02 Score=33.11 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=14.5
Q ss_pred CCEEEEEECCCCCEEECCCEEEEEC
Q ss_conf 8689999857898933697899996
Q gi|254780386|r 64 SGIIKKFQVENGSQILQGTPLLTFE 88 (440)
Q Consensus 64 ~G~V~~i~VkeGd~VkkGq~L~~ld 88 (440)
.|.|.+++|++||.|++||+|+.++
T Consensus 19 eg~i~~W~v~~Gd~V~~gd~l~evE 43 (87)
T 3crk_C 19 MGTVQRWEKKVGEKLSEGDLLAEIE 43 (87)
T ss_dssp EEEEEEECSCTTCEECTTCEEEEEE
T ss_pred EEEEEEEECCCCCEEECCCEEEEEE
T ss_conf 7999998639999997899799999
No 50
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.64 E-value=0.016 Score=33.63 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=10.0
Q ss_pred EEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 687312120122212444554210
Q gi|254780386|r 298 GTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 298 G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
|+|....+ ..|+.|..|++|+.|
T Consensus 22 g~i~~W~v-~~Gd~V~~gd~l~ev 44 (98)
T 2dnc_A 22 GNIVKWLK-KEGEAVSAGDALCEI 44 (98)
T ss_dssp ECEEEESS-CTTCEECTTSEEEEE
T ss_pred EEEEEEEE-CCCCEEECCCEEEEE
T ss_conf 99999990-899999389989999
No 51
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=94.64 E-value=0.045 Score=30.72 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=11.3
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 21002232101122322222210233332221
Q gi|254780386|r 169 TRMRSIYLNRLDLENKSSLLRALLSSHQKDLT 200 (440)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~el~ 200 (440)
..+..+...+..+..++..++..+......+.
T Consensus 132 ~~i~~Lq~~ie~~~~~ik~Le~~i~~~~~~l~ 163 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDIKIRACK 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999998
No 52
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=94.60 E-value=0.022 Score=32.80 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=14.5
Q ss_pred EEEEECCEEECCCCCCCCCCCCCCCC
Q ss_conf 16873121201222124445542103
Q gi|254780386|r 297 AGTIVYNQSFSSSNYAQQSQPLMKIV 322 (440)
Q Consensus 297 ~G~V~~l~~~~~G~~v~~G~~l~~Iv 322 (440)
.|+|..... ..|+.|..|++|+.|-
T Consensus 41 Eg~I~~W~v-k~GD~V~~gd~L~evE 65 (128)
T 1y8o_B 41 MGTVQRWEK-KVGEKLSEGDLLAEIE 65 (128)
T ss_dssp EEEEEEECS-CTTCEECTTCEEEEEE
T ss_pred EEEEEEEEE-CCCCEEECCCEEEEEE
T ss_conf 799989995-7999980899799998
No 53
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=94.46 E-value=0.16 Score=27.10 Aligned_cols=34 Identities=6% Similarity=0.003 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 9888999874343323321001233332221145
Q gi|254780386|r 92 TTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYD 125 (440)
Q Consensus 92 ~~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~ 125 (440)
.+..+..++.++..++.++...+..++.....+.
T Consensus 7 ~~~~l~~~~~el~~~~~~~~~~~~~~~~~~~~~~ 40 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANN 40 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999
No 54
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=94.22 E-value=0.084 Score=28.89 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCEEEEECCEE
Q ss_conf 222123455541168731212
Q gi|254780386|r 285 KTREQKTILSPIAGTIVYNQS 305 (440)
Q Consensus 285 ~~l~~~~I~AP~~G~V~~l~~ 305 (440)
.+.....|.||++|.+..+..
T Consensus 8 ~~~~~~~i~aPv~G~vi~L~~ 28 (162)
T 1ax3_A 8 NEIGEEVFVSPITGEIHPITD 28 (162)
T ss_dssp CTTCCSSCCCCCSEEEEEGGG
T ss_pred CCCCCEEEEECCCCEEEECCC
T ss_conf 025975999348868988231
No 55
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=94.11 E-value=0.017 Score=33.59 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=11.5
Q ss_pred CCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 4555411687312120122212444554210
Q gi|254780386|r 291 TILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 291 ~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
.|.||.+|+|..+.+ ..|+.|..|++|+.|
T Consensus 46 ei~ap~~G~v~~i~v-~~G~~v~~G~~l~~i 75 (79)
T 1ghj_A 46 EVLAEADGVIAEIVK-NEGDTVLSGELLGKL 75 (79)
T ss_dssp EEECSSCEEEEEESS-CTTCEECTTCEEEEE
T ss_pred EEEECCCEEEEEEEE-CCCCEECCCCEEEEE
T ss_conf 998346899999984-899997899999999
No 56
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=94.01 E-value=0.017 Score=33.54 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 998889998743
Q gi|254780386|r 91 ETTDLIDLKKVS 102 (440)
Q Consensus 91 ~~~~~l~~~~~~ 102 (440)
+.+..+++....
T Consensus 53 r~q~~ie~~~~~ 64 (390)
T 1deq_A 53 RMKGLIDEVDQD 64 (390)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999
No 57
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=93.87 E-value=0.025 Score=32.38 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=19.7
Q ss_pred CCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 34555411687312120122212444554210
Q gi|254780386|r 290 KTILSPIAGTIVYNQSFSSSNYAQQSQPLMKI 321 (440)
Q Consensus 290 ~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~I 321 (440)
..|.||.+|+|..+.+ ..|+.|..|++|+.|
T Consensus 48 ~ei~a~~~G~I~~i~v-~eG~~V~~G~~L~~I 78 (93)
T 1k8m_A 48 VTITSRYDGVIKKLYY-NLDDIAYVGKPLVDI 78 (93)
T ss_dssp EECCCSSCEEEEEECC-CSSCEECTTSEEEEE
T ss_pred EEEECCCCEEEEEEEE-CCCCEECCCCEEEEE
T ss_conf 9788388999999953-899998899999999
No 58
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=93.80 E-value=0.0089 Score=35.39 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=21.2
Q ss_pred CCCEEEEEECCCCCEEECCCEEEEECHHH
Q ss_conf 88689999857898933697899996489
Q gi|254780386|r 63 FSGIIKKFQVENGSQILQGTPLLTFEDIE 91 (440)
Q Consensus 63 ~~G~V~~i~VkeGd~VkkGq~L~~ld~~~ 91 (440)
..|.|.+|+|++||.|++||+|+++....
T Consensus 16 ~eg~I~~Wlvk~GD~V~~gd~L~evETDK 44 (229)
T 1zy8_K 16 EEGNIVKWLKKEGEAVSAGDALCEIETDK 44 (229)
T ss_dssp -----------------------------
T ss_pred CEEEEEEEEECCCCEECCCCEEEEEEECC
T ss_conf 26999899818999977999799999286
No 59
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=93.73 E-value=0.03 Score=31.87 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99888999874343
Q gi|254780386|r 91 ETTDLIDLKKVSIK 104 (440)
Q Consensus 91 ~~~~~l~~~~~~l~ 104 (440)
+.+..+...+..++
T Consensus 86 eLqd~L~kQe~~lk 99 (464)
T 1m1j_B 86 ELQTTLLKQEKTVK 99 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999999
No 60
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=93.72 E-value=0.018 Score=33.42 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=34.0
Q ss_pred EEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHH
Q ss_conf 8984688868999985789893369789999648998889
Q gi|254780386|r 57 VEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLI 96 (440)
Q Consensus 57 ~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l 96 (440)
..|.|.++|+|.+++|++||.|++||+|++||+.+++.++
T Consensus 2 V~i~~~v~G~V~~i~v~eG~~V~kGq~L~~ld~~~a~~~~ 41 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDF 41 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECTTTSHHH
T ss_pred CEEECCCCEEEEEEECCCCCEECCCCEEEEEECHHHHHHH
T ss_conf 3896757889999988898998899899987621113355
No 61
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=93.55 E-value=0.022 Score=32.84 Aligned_cols=35 Identities=6% Similarity=0.112 Sum_probs=22.2
Q ss_pred CCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 234555411687312120122212444554210335
Q gi|254780386|r 289 QKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPH 324 (440)
Q Consensus 289 ~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~ 324 (440)
...+.||.+|+|..+.+ ..|+.|.+|++|+.|-++
T Consensus 44 ~~~i~a~~~G~v~~i~v-~~G~~V~~G~~l~~ie~~ 78 (81)
T 1gjx_A 44 TMDVPAEVAGVVKEVKV-KVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp EEEECCCCSSBBCCCCC-CSSCEECSSSCCCEECCS
T ss_pred EEEEECCCCEEEEEEEE-CCCCEECCCCEEEEEECC
T ss_conf 79998055479999982-898998899999999456
No 62
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=93.48 E-value=0.011 Score=34.79 Aligned_cols=42 Identities=33% Similarity=0.527 Sum_probs=35.6
Q ss_pred EEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHH
Q ss_conf 999538738984688868999985789893369789999648
Q gi|254780386|r 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 49 ~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
+|..+.-...|.|+.+|+|.+|++++||.|.-|++|+.++..
T Consensus 38 evETDKa~~ev~s~~~G~l~~i~~~~G~~v~vG~~i~~i~~~ 79 (428)
T 3dva_I 38 EVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp ------------------------------------------
T ss_pred EEECCCEEEEECCCCCEEEEEEEECCCCEEECCCEEEEEECC
T ss_conf 998487607974689979999984899998079989999557
No 63
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=93.27 E-value=0.03 Score=31.87 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 998743433233210012
Q gi|254780386|r 97 DLKKVSIKNLRCHIDTEK 114 (440)
Q Consensus 97 ~~~~~~l~~l~~~l~~~~ 114 (440)
...+.++..++.+++...
T Consensus 96 ~~lkeqi~eLeq~ieqLq 113 (464)
T 1m1j_B 96 KTVKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 64
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=93.18 E-value=0.013 Score=34.29 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=27.4
Q ss_pred CCCCEEEEEECCCCCEEECCCEEEEECHHHHHHH
Q ss_conf 8886899998578989336978999964899888
Q gi|254780386|r 62 PFSGIIKKFQVENGSQILQGTPLLTFEDIETTDL 95 (440)
Q Consensus 62 ~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~ 95 (440)
...|.|.+|+|++||.|++||+|++++...+.-+
T Consensus 14 ~~eg~i~~W~~~~Gd~V~~gd~l~evETDKa~~e 47 (428)
T 3dva_I 14 IHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVE 47 (428)
T ss_dssp ----------------------------------
T ss_pred CEEEEEEEEEECCCCEECCCCEEEEEECCCEEEE
T ss_conf 4069999999289998589991999984876079
No 65
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=93.08 E-value=0.023 Score=32.59 Aligned_cols=25 Identities=4% Similarity=-0.020 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8889998743433233210012333
Q gi|254780386|r 93 TDLIDLKKVSIKNLRCHIDTEKSAL 117 (440)
Q Consensus 93 ~~~l~~~~~~l~~l~~~l~~~~~~l 117 (440)
+.++..++.++..++.+++.....+
T Consensus 15 ~~el~~~~~~~~~~~~~~~~~~~~~ 39 (497)
T 3iox_A 15 QTELARVQKANADAKAAYEAAVAAN 39 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999
No 66
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli}
Probab=93.08 E-value=0.029 Score=31.95 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=25.3
Q ss_pred CCCCCEEEEEEECHHHHHHCCCCCCEEEEEEECC
Q ss_conf 3556504775326223110158983179998128
Q gi|254780386|r 323 PHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYA 356 (440)
Q Consensus 323 p~~~~l~v~~~v~~~di~~i~~Gq~v~i~~~a~~ 356 (440)
|.+..+.|.+.+|..| +.+++||.++++++..+
T Consensus 226 ~~t~~~~v~i~~~~~~-~~L~~G~~~~v~i~~~~ 258 (277)
T 2f1m_A 226 QTTGSITLRAIFPNPD-HTMMPGMFVRARLEEGL 258 (277)
T ss_dssp SSSCEEEEEEEECCTT-CCCCSSCEEEEEEC---
T ss_pred CCCEEEEEEEEEECCC-CCCCCCCEEEEEEEECC
T ss_conf 6846999999983998-85689999999999678
No 67
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=93.03 E-value=0.061 Score=29.83 Aligned_cols=39 Identities=26% Similarity=0.641 Sum_probs=30.9
Q ss_pred EECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECH
Q ss_conf 953873898468886899998578989336978999964
Q gi|254780386|r 51 LNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89 (440)
Q Consensus 51 ~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~ 89 (440)
....-...|.|+.+|+|.+++|++||.|..|++|+.++.
T Consensus 34 E~~K~~~~v~a~~~G~v~~i~v~~Gd~V~~G~~l~~ie~ 72 (85)
T 2k7v_A 34 EGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 72 (85)
T ss_dssp SCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEEC
T ss_pred ECCCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 818837998637898998999689899799999999974
No 68
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=92.85 E-value=0.036 Score=31.32 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCC
Q ss_conf 222212345554116873121201222124445542103
Q gi|254780386|r 284 EKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIV 322 (440)
Q Consensus 284 ~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Iv 322 (440)
+..--...|.||.+|+|..+.+ ..|+.|.+|++|+.|-
T Consensus 38 Et~K~~~~i~a~~~G~v~~i~v-~~G~~v~~G~~l~~ie 75 (80)
T 1qjo_A 38 EGDKASMEVPAPFAGVVKELKV-NVGDKVKTGSLIMIFE 75 (80)
T ss_dssp ESSSSCEEEEBSSCEEEEECCC-CTTCEECTTCCCEEEE
T ss_pred EECCCCEEEECCCCEEEEEEEE-CCCCEECCCCEEEEEE
T ss_conf 9075451998465279999995-8989958999999996
No 69
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=92.72 E-value=0.045 Score=30.69 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=10.9
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 23210112232222221023333222101
Q gi|254780386|r 174 IYLNRLDLENKSSLLRALLSSHQKDLTMM 202 (440)
Q Consensus 174 ~~~~~~~l~~~~~~l~~~~~~~~~el~~~ 202 (440)
....+..|+..+..+..++..++.+++.+
T Consensus 130 ~~~~i~~Lq~~ie~~~~~ik~Le~~i~~~ 158 (491)
T 1m1j_A 130 QVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999
No 70
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, merlin, actin binding, masking, regulation, SELF-inhibition cell adhesion; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=92.55 E-value=0.012 Score=34.53 Aligned_cols=13 Identities=15% Similarity=0.182 Sum_probs=6.6
Q ss_pred EEEEEEEEEEEEE
Q ss_conf 1258999799995
Q gi|254780386|r 40 IEISVSSSGEILN 52 (440)
Q Consensus 40 ~~~~v~~~G~i~~ 52 (440)
+-..|...|..+-
T Consensus 216 ~~lgi~~~Gi~i~ 228 (575)
T 2i1j_A 216 LWLGVDALGLNIY 228 (575)
T ss_dssp EEEEECSSEEEEE
T ss_pred EEEEEECCCEEEE
T ss_conf 7999916956996
No 71
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=91.29 E-value=0.056 Score=30.04 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=16.2
Q ss_pred EEEEECCCCCEEEEEECCCCCEEECCCEEEEEC
Q ss_conf 389846888689999857898933697899996
Q gi|254780386|r 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88 (440)
Q Consensus 56 ~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld 88 (440)
...|.||.+|+|.++++++||.|..|++|+.++
T Consensus 45 ~~ei~a~~~G~l~~i~v~~G~~v~vG~~l~~i~ 77 (80)
T 1pmr_A 45 VLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp CCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred EEEEEECCCEEEEEEEECCCCEECCCCEEEEEE
T ss_conf 899870368999999868999987999999997
No 72
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=90.41 E-value=0.02 Score=33.04 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222222221222332212222
Q gi|254780386|r 266 LEQNQRTFADEMSKLTILEKT 286 (440)
Q Consensus 266 l~e~~~~l~~~~~~l~~l~~~ 286 (440)
+......+.....++..++..
T Consensus 214 l~~l~~~l~~~~~~i~~LE~~ 234 (242)
T 3c9i_A 214 IQAIANALITERRRTKAMEDA 234 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999
No 73
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=90.15 E-value=0.11 Score=28.24 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=45.3
Q ss_pred EEEEEEEEEEEEEEEC-CCEEEEECCCCCEEEEEEC-CCCCEEECCCEEEEECHHHHH
Q ss_conf 6712589997999953-8738984688868999985-789893369789999648998
Q gi|254780386|r 38 LPIEISVSSSGEILNE-DNVVEIKSPFSGIIKKFQV-ENGSQILQGTPLLTFEDIETT 93 (440)
Q Consensus 38 ~~~~~~v~~~G~i~~~-~~~~~I~s~~~G~V~~i~V-keGd~VkkGq~L~~ld~~~~~ 93 (440)
..+..++.+.|+|.+. .....|.++.+|.|++++| .+||.|+|||+|++||..+..
T Consensus 102 ~~~~~~~~~~G~V~~d~~~~~~v~a~~~G~I~~l~v~~~Gd~VkkGq~L~~lds~~l~ 159 (407)
T 3h9i_A 102 GPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWV 159 (407)
T ss_dssp ECCEEEEEEEEEEEECGGGCEEEEEESCCCCBCCCSCCSSCEESTTCCCEEEECHHHH
T ss_pred EEEEEEEEEEEEEEECCCEEEEEECCCCEEEEEEEECCCCCEECCCCEEEEECCHHHH
T ss_conf 6310599998999988760899965667799999506899988589889998786799
No 74
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans}
Probab=90.03 E-value=0.088 Score=28.77 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=47.0
Q ss_pred EEEEEEEEEEEEEEEEC-CCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHH
Q ss_conf 06712589997999953-87389846888689999857898933697899996489
Q gi|254780386|r 37 LLPIEISVSSSGEILNE-DNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIE 91 (440)
Q Consensus 37 ~~~~~~~v~~~G~i~~~-~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~ 91 (440)
-..+..++.+.|++.+. .....|.++++|+|.+++|++||.|++||+|++||+.+
T Consensus 37 ~~~~~~~~~~~G~v~~~p~~~~~l~~~v~G~V~~i~v~~G~~V~kGq~L~~id~~e 92 (359)
T 3lnn_A 37 RETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD 92 (359)
T ss_dssp EEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred EEECCEEEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEECCCCEEEEECHHH
T ss_conf 87232699999999977557999967777899999989919988999899998599
No 75
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=89.86 E-value=0.1 Score=28.37 Aligned_cols=49 Identities=6% Similarity=-0.020 Sum_probs=27.7
Q ss_pred ECCCCCEEECCCE-EEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8578989336978-999964899888999874343323321001233332
Q gi|254780386|r 71 QVENGSQILQGTP-LLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDF 119 (440)
Q Consensus 71 ~VkeGd~VkkGq~-L~~ld~~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~ 119 (440)
.|+.||.+-.=|. -+...-.++.+.+...+.+++..+++++..+..++.
T Consensus 52 ~V~~G~~L~~id~~~~~~~~~~~~a~~~~~~~~l~~a~~~l~~a~~~~~r 101 (341)
T 3fpp_A 52 KVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSR 101 (341)
T ss_dssp EECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred EECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899989998819999999999998988765489998788874433201
No 76
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=89.64 E-value=0.098 Score=28.46 Aligned_cols=120 Identities=11% Similarity=0.164 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCC--CCCCCCCCCCEEEEEEECHHHHHHCC-------------CCCCE
Q ss_conf 2222123455541168731212012221244455--42103355650477532622311015-------------89831
Q gi|254780386|r 284 EKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQP--LMKIVPHSKLTYIRAKVTPKQIQHVK-------------KGYTA 348 (440)
Q Consensus 284 ~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~--l~~Ivp~~~~l~v~~~v~~~di~~i~-------------~Gq~v 348 (440)
+..+.+..+.+|++|.+...+. ..|..+..+.. .+.+. +.+.+.+.+.+++.++..++ .|..+
T Consensus 132 ~~~l~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 209 (369)
T 1vf7_A 132 RINLRYTKVLSPISGRIGRSAV-TEGALVTNGQANAMATVQ-QLDPIYVDVTQPSTALLRLRRELASGQLERAGDNAAKV 209 (369)
T ss_dssp HHHHHTTEEECSSSEEECCCSS-CBTCEECTTCSSCSEEEE-CCSEEECCEEEEHHHHHHHHHHHHHTSSCEEETTEEEC
T ss_pred HHHHHHHHHCCCCHHCCCCCCE-EECCEECCCCCCEEEEEE-CCCCEEEEEECCHHHHHHHHHHHCCCHHHHCCCCCEEE
T ss_conf 8888776642860010320002-203140377651158995-27715999933187899986421010122124675069
Q ss_pred EEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECE
Q ss_conf 79998128875443999999971334446777655118999999350112567851523775699999220
Q gi|254780386|r 349 TVRFPHYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKN 419 (440)
Q Consensus 349 ~i~~~a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~ 419 (440)
.+.++.++ ...+.|+|..|++.....+ ..|.+.+.+++ .+..|+|||.+++.|.+..
T Consensus 210 ~~~~~~~~---~~~~~g~i~~i~~~~~~~t------~~~~v~~~v~~-----~~~~l~~G~~v~v~i~~~~ 266 (369)
T 1vf7_A 210 SLKLEDGS---QYPLEGRLEFSEVSVDEGT------GSVTIRAVFPN-----PNNELLPGMFVHAQLQEGV 266 (369)
T ss_dssp CEECTTSC---EESSCCEEESSCSCCCSSS------SEEEECBEEEC-----SSSCCCTTCEEEEEEECC-
T ss_pred EEEECCCC---CEEEEEEEEEECCCCCCCC------CEEEEEEECCC-----CCCCCCCCEEEEEEEECCC
T ss_conf 99961688---6058899998603336775------16999997479-----8765568718999998155
No 77
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=89.12 E-value=0.15 Score=27.19 Aligned_cols=14 Identities=0% Similarity=0.033 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 22212444554210
Q gi|254780386|r 308 SSNYAQQSQPLMKI 321 (440)
Q Consensus 308 ~G~~v~~G~~l~~I 321 (440)
.|+.|.+|+.|++-
T Consensus 68 dG~~Vk~g~~la~W 81 (190)
T 2auk_A 68 DGEQVAGGETVANW 81 (190)
T ss_dssp TTCEECTTCEEEEC
T ss_pred CCCEECCCCEEEEE
T ss_conf 98997389899986
No 78
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=88.77 E-value=0.11 Score=28.11 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=4.2
Q ss_pred EEEECHHHHHHC
Q ss_conf 753262231101
Q gi|254780386|r 331 RAKVTPKQIQHV 342 (440)
Q Consensus 331 ~~~v~~~di~~i 342 (440)
+.++--..|-.+
T Consensus 291 EfWlGle~ih~l 302 (461)
T 3ghg_B 291 EYWLGNDKISQL 302 (461)
T ss_dssp CEEECHHHHHHH
T ss_pred CEECCHHHHHHH
T ss_conf 745155899997
No 79
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=88.55 E-value=0.51 Score=23.67 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=25.2
Q ss_pred CCCCCCEEEEECCEEECCCCCCCCCCCCCCCC
Q ss_conf 45554116873121201222124445542103
Q gi|254780386|r 291 TILSPIAGTIVYNQSFSSSNYAQQSQPLMKIV 322 (440)
Q Consensus 291 ~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Iv 322 (440)
-++||.+|.+.. . ...|+.|.+|+.|++|.
T Consensus 269 ~v~A~~~Gl~~~-~-v~lG~~V~kGq~ig~I~ 298 (354)
T 3cdx_A 269 YVMAPRTGLFEP-T-HYVGEEVRTGETAGWIH 298 (354)
T ss_dssp EEECSSCEEEEE-S-CCTTCEECTTSEEEEEE
T ss_pred EEECCCCEEEEE-C-CCCCCEECCCCEEEEEE
T ss_conf 222799879998-0-78799948999999995
No 80
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=88.50 E-value=0.23 Score=25.95 Aligned_cols=14 Identities=14% Similarity=-0.137 Sum_probs=6.8
Q ss_pred EHHHHHHHHHHHHHH
Q ss_conf 479999999998998
Q gi|254780386|r 421 TLAQEIIHPITDNWP 435 (440)
Q Consensus 421 ~~~~~~~~p~~~~~~ 435 (440)
|+|.||. .|++-..
T Consensus 434 ~fw~w~~-~~~~~~~ 447 (596)
T 1bg1_A 434 SFWVWLD-NIIDLVK 447 (596)
T ss_dssp BHHHHHH-HHHHHHH
T ss_pred CHHHHHH-HHHHHHH
T ss_conf 5799999-9999999
No 81
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=88.00 E-value=0.68 Score=22.82 Aligned_cols=23 Identities=13% Similarity=-0.073 Sum_probs=15.5
Q ss_pred CCCCCCCCCCEEEEECCEEECCC
Q ss_conf 21234555411687312120122
Q gi|254780386|r 287 REQKTILSPIAGTIVYNQSFSSS 309 (440)
Q Consensus 287 l~~~~I~AP~~G~V~~l~~~~~G 309 (440)
....+|+||.+|+|..++....|
T Consensus 336 ~~~~~i~a~~~G~i~~id~~~ig 358 (436)
T 3h5q_A 336 QYQIEYKAKKSGYVTELVSNDIG 358 (436)
T ss_dssp SEEEEEECSSCEEEEEECHHHHH
T ss_pred CEEEEEECCCCEEEEEEEHHHHH
T ss_conf 76899955887899995079999
No 82
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus HB8}
Probab=87.73 E-value=0.71 Score=22.71 Aligned_cols=21 Identities=5% Similarity=0.170 Sum_probs=14.6
Q ss_pred CCCCCCCCEEEEECCEEECCC
Q ss_conf 234555411687312120122
Q gi|254780386|r 289 QKTILSPIAGTIVYNQSFSSS 309 (440)
Q Consensus 289 ~~~I~AP~~G~V~~l~~~~~G 309 (440)
...|+||.+|+|..++....|
T Consensus 327 ~~~i~a~~~G~v~~id~~~ig 347 (423)
T 2dsj_A 327 EHPLRAEREGVVREVDAYKVG 347 (423)
T ss_dssp EEEEECSSCEEEEEECHHHHH
T ss_pred EEEEECCCCEEEEEEEHHHHH
T ss_conf 467844887399872079999
No 83
>2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099}
Probab=87.64 E-value=0.56 Score=23.42 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=25.3
Q ss_pred CCCCCCEEEEECCEEECCCCCCCCCCCCCCCCC
Q ss_conf 455541168731212012221244455421033
Q gi|254780386|r 291 TILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVP 323 (440)
Q Consensus 291 ~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp 323 (440)
.++||.+|.+.. . ...|+.|.+|++|..|.+
T Consensus 259 ~l~a~~~G~~~~-~-~~~G~~V~kGq~lg~i~~ 289 (332)
T 2qj8_A 259 QLKSPSPGIFEP-R-CSVMDEVEQGDVVGVLHP 289 (332)
T ss_dssp EEECSSSEEEEE-C-SCTTCEECTTCEEEEEEC
T ss_pred EEECCCCCEEEE-C-CCCCCEECCCCEEEEEEC
T ss_conf 622798877987-5-898999889999999817
No 84
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=86.59 E-value=0.47 Score=23.88 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=27.3
Q ss_pred CCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCEE
Q ss_conf 345554116873121201222124445542103355650477532622311015898317
Q gi|254780386|r 290 KTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTAT 349 (440)
Q Consensus 290 ~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~ 349 (440)
+.|+|..||+|..... . |++ |..| .| +-..-++++|-.-..+. |++||.|+
T Consensus 243 tpV~Aa~~G~V~~ag~-~-~gy---Gn~V-~I--~H~~g~~T~YaHls~~~-V~~G~~V~ 293 (361)
T 2gu1_A 243 APVYSTGDGKVIVVRK-H-PYA---GNYL-VI--EHNSVYKTRYLHLDKIL-VKKGQLVK 293 (361)
T ss_dssp CEEECSSSEEEEEEEE-E-TTT---EEEE-EE--ECSSSEEEEEEEESEEC-CCTTCEEC
T ss_pred CCEEEEEEEEEEEEEE-C-CCC---CCEE-EE--ECCCCEEEEEECCCCCC-CCCCCEEC
T ss_conf 7202130368999986-4-788---8758-99--87998599984451113-38899999
No 85
>3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B} PDB: 3lwu_A*
Probab=86.31 E-value=0.92 Score=21.95 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=25.9
Q ss_pred CCCCCCCEEEEECCEEECCCCCCCCCCCCCCCC
Q ss_conf 345554116873121201222124445542103
Q gi|254780386|r 290 KTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIV 322 (440)
Q Consensus 290 ~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Iv 322 (440)
..++||.+|.+.. . ...|+.|..|++|++|+
T Consensus 291 ~~v~a~~~Gl~~~-~-~~~G~~V~~G~~lg~i~ 321 (368)
T 3fmc_A 291 RKFHAPKAGMVEY-L-GKVGVPMKATDPLVNLL 321 (368)
T ss_dssp EEEECSSCEEEEE-C-SCTTCCBCTTCEEEEEE
T ss_pred EEEECCCCEEEEE-C-CCCCCEECCCCEEEEEE
T ss_conf 7995899858887-7-99979978998899997
No 86
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=86.15 E-value=0.12 Score=27.97 Aligned_cols=42 Identities=31% Similarity=0.412 Sum_probs=32.8
Q ss_pred EEEEECCCEEEEECCCCCEEEEEECCCCC-EEECCCEEEEECH
Q ss_conf 99995387389846888689999857898-9336978999964
Q gi|254780386|r 48 GEILNEDNVVEIKSPFSGIIKKFQVENGS-QILQGTPLLTFED 89 (440)
Q Consensus 48 G~i~~~~~~~~I~s~~~G~V~~i~VkeGd-~VkkGq~L~~ld~ 89 (440)
..|..+.-...|-|+.+|+|.+|+|++|| .|.-|+++..+..
T Consensus 38 ~evETDKa~~Ev~ap~~G~l~~i~v~eG~~~v~vg~~i~~i~~ 80 (229)
T 1zy8_K 38 CEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp -------------------------------------------
T ss_pred EEEEECCEEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEC
T ss_conf 9999286689998726717988776237521245641023202
No 87
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=85.56 E-value=0.42 Score=24.26 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCEE
Q ss_conf 12345554116873121201222124445542103355650477532622311015898317
Q gi|254780386|r 288 EQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTAT 349 (440)
Q Consensus 288 ~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~ 349 (440)
..+.|+||.||+|...... -.-|..+ ++...+. +...|..-..+ .|+.||.|+
T Consensus 189 ~gt~V~A~~~G~V~~~~~~-----~~~G~~v--~i~hg~g-~~t~Y~hls~i-~V~~G~~V~ 241 (282)
T 2hsi_A 189 AGTPIKAPAAGKVILIGDY-----FFNGKTV--FVDHGQG-FISMFCHLSKI-DVKLGQQVP 241 (282)
T ss_dssp TTCEEECSSCEEEEEEEEE-----TTTEEEE--EEEEETT-EEEEEEEESEE-CSCTTCEEC
T ss_pred CCCCEEEEEEEEEEECCCC-----CCCCCEE--EEECCCC-EEEEECCCCCC-CCCCCCEEC
T ss_conf 9972740571274741356-----8798099--9986997-79996363603-538799999
No 88
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transport; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=85.29 E-value=0.35 Score=24.80 Aligned_cols=54 Identities=19% Similarity=0.100 Sum_probs=24.0
Q ss_pred CCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCE
Q ss_conf 1234555411687312120122212444554210335565047753262231101589831
Q gi|254780386|r 288 EQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTA 348 (440)
Q Consensus 288 ~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v 348 (440)
+++.+.|+++|+|..+.....| ...++|.. ++.-.++-.||.----.|+.|+.|
T Consensus 168 NN~a~~AevsG~Vs~I~~~ekG------~~~I~I~t-~dGe~v~y~IP~G~~L~V~eGd~V 221 (249)
T 1ci3_M 168 NNAVYNASAAGVITAIAKADDG------SAEVKIRT-EDGTTIVDKIPAGPELIVSEGEEV 221 (249)
T ss_dssp SSSCCBCSSCEEEEEEEECTTS------CEEEEEEC-TTSCEEEEEECSSSCBCCCTTCEE
T ss_pred CCCEEECCCCEEEEEEEECCCC------CEEEEEEC-CCCCEEEEECCCCCEEEECCCCEE
T ss_conf 8850764367599884872799------88999989-999799997699981577789998
No 89
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=85.11 E-value=0.094 Score=28.58 Aligned_cols=108 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 48998889998743433233210012333322211455542235688887765546788654333655420011222112
Q gi|254780386|r 89 DIETTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKL 168 (440)
Q Consensus 89 ~~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (440)
......++..++.++.++..++...+..+..+..++...+..++....++.....++.....+ ....+.....++....
T Consensus 33 e~~ld~eI~~Le~~l~el~~~l~ele~~Iq~Lq~ql~~~~~~Lqq~~e~l~q~~~el~eei~~-lk~~I~~~e~qI~eLq 111 (409)
T 1m1j_C 33 RLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIR-YENTILAHENTIQQLT 111 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 988899999999999999999999999999999999999999999999999999999999999-9999999998999999
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 21002232101122322222210233332
Q gi|254780386|r 169 TRMRSIYLNRLDLENKSSLLRALLSSHQK 197 (440)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 197 (440)
..+.........++.+...++.+......
T Consensus 112 ~~l~~~~~~I~~LkqkI~qLeqq~qe~~~ 140 (409)
T 1m1j_C 112 DMHIMNSNKITQLKQKIAQLESHCQEPCK 140 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99987776556799999999987501124
No 90
>2efr_A General control protein GCN4 and tropomyosin 1 alpha chain; coiled coil, destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=84.33 E-value=0.12 Score=27.79 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99987434332332100123
Q gi|254780386|r 96 IDLKKVSIKNLRCHIDTEKS 115 (440)
Q Consensus 96 l~~~~~~l~~l~~~l~~~~~ 115 (440)
+..+...+..+...+.....
T Consensus 9 ~~~l~~~~~~l~~~~~~l~~ 28 (155)
T 2efr_A 9 VEELLSKNYHLENEVARLKK 28 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999
No 91
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=83.78 E-value=0.24 Score=25.80 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCE
Q ss_conf 1234555411687312120122212444554210335565047753262231101589831
Q gi|254780386|r 288 EQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTA 348 (440)
Q Consensus 288 ~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v 348 (440)
+++.+.|+++|+|..+.. +.|. .-++|.+++. -.++-.||.----.|+.|+.|
T Consensus 169 nN~a~~Ae~aG~Vs~I~~-~kgg------~~I~I~~~dG-e~v~y~IP~G~~L~V~eGD~V 221 (249)
T 2jxm_B 169 NNNAFSASIAGTIAAIED-NGFG------FDVTIQPEDG-DAVVTSILPGPELIVAVGDTV 221 (249)
T ss_dssp SSSCCBCSSCEEEEEECC-SSSE------EEEEEECTTS-CCEEEEECSSSCBCCCTTCEE
T ss_pred CCCEEECCCCEEEEEEEE-CCCC------EEEEEECCCC-CEEEEECCCCCEEEECCCCEE
T ss_conf 887377425749999797-7997------6999989999-889997489981477899998
No 92
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=83.38 E-value=0.8 Score=22.35 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCCCCCCCC--CEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCEEEE----
Q ss_conf 332212222212345554--11687312120122212444554210335565047753262231101589831799----
Q gi|254780386|r 278 SKLTILEKTREQKTILSP--IAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVR---- 351 (440)
Q Consensus 278 ~~l~~l~~~l~~~~I~AP--~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~i~---- 351 (440)
.++..++.++++. +.| .-|++.... .. |+ +.+......|.|. -=|..|...+++|+.|.+-
T Consensus 82 ~ei~~Lr~el~~L--~~PP~~~Gt~l~~~--dd------~t--a~V~s~GrkmrV~-vsp~Vd~~~L~pG~~V~LNE~l~ 148 (251)
T 3m9b_A 82 QQLLALREEVDRL--GQPPSGYGVLLATH--DD------DT--VDVFTSGRKMRLT-CSPNIDAASLKKGQTVRLNEALT 148 (251)
T ss_dssp HHHHHHHHHHHHH--HSCCEEEEEEEEEC--SS------SC--EEEECSSSCCEEC-BCTTSCTTTSCSSCEEEECTTCC
T ss_pred HHHHHHHHHHHHH--CCCCCEEEEEEEEC--CC------CE--EEEEECCCEEEEE-ECCCCCHHHCCCCCEEEECCCCE
T ss_conf 9999999999974--59995389999863--99------85--9999389879998-27988988889899999688527
Q ss_pred -EEECCCCCCCEEE
Q ss_conf -9812887544399
Q gi|254780386|r 352 -FPHYADIREKKFK 364 (440)
Q Consensus 352 -~~a~~~~~~~~~~ 364 (440)
+.+.++...|.+-
T Consensus 149 VVe~~~~e~~Gevv 162 (251)
T 3m9b_A 149 VVEAGTFEAVGEIS 162 (251)
T ss_dssp BCCCCCCCCCSEEE
T ss_pred EEEECCCCCCCCEE
T ss_conf 88845888867759
No 93
>1y1u_A Signal transducer and activator of transcription 5A; STAT, DNA-binding, SH2 domain, transcription regulation, signaling protein; 3.21A {Mus musculus}
Probab=83.33 E-value=0.24 Score=25.85 Aligned_cols=13 Identities=15% Similarity=-0.064 Sum_probs=6.7
Q ss_pred EHHHHHHHHHHHHH
Q ss_conf 47999999999899
Q gi|254780386|r 421 TLAQEIIHPITDNW 434 (440)
Q Consensus 421 ~~~~~~~~p~~~~~ 434 (440)
|+|.||.. |++-+
T Consensus 442 ~fw~w~~~-~~~~~ 454 (585)
T 1y1u_A 442 TFWQWFDG-VMEVL 454 (585)
T ss_dssp BHHHHHHH-HHHHH
T ss_pred CHHHHHHH-HHHHH
T ss_conf 46999999-99999
No 94
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=82.43 E-value=0.12 Score=27.76 Aligned_cols=10 Identities=10% Similarity=0.182 Sum_probs=3.2
Q ss_pred EECHHHHHHC
Q ss_conf 3262231101
Q gi|254780386|r 333 KVTPKQIQHV 342 (440)
Q Consensus 333 ~v~~~di~~i 342 (440)
++.-..|-.+
T Consensus 227 wlGle~ih~l 236 (411)
T 3ghg_C 227 WLGNEKIHLI 236 (411)
T ss_dssp ECCHHHHHHH
T ss_pred EECHHHHHHH
T ss_conf 3256999998
No 95
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=82.31 E-value=0.018 Score=33.35 Aligned_cols=13 Identities=15% Similarity=-0.128 Sum_probs=6.7
Q ss_pred EHHHHHHHHHHHHH
Q ss_conf 47999999999899
Q gi|254780386|r 421 TLAQEIIHPITDNW 434 (440)
Q Consensus 421 ~~~~~~~~p~~~~~ 434 (440)
|+|.||. +|++-.
T Consensus 418 ~fw~w~~-~~~~~~ 430 (575)
T 1bf5_A 418 PFWLWIE-SILELI 430 (575)
T ss_dssp CHHHHHH-HHHHHH
T ss_pred CHHHHHH-HHHHHH
T ss_conf 6699999-999999
No 96
>2efr_A General control protein GCN4 and tropomyosin 1 alpha chain; coiled coil, destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=82.16 E-value=0.072 Score=29.33 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=3.1
Q ss_pred HHHHHHHHHH
Q ss_conf 4343323321
Q gi|254780386|r 101 VSIKNLRCHI 110 (440)
Q Consensus 101 ~~l~~l~~~l 110 (440)
..+..+...+
T Consensus 21 ~~~~~l~~~~ 30 (155)
T 2efr_A 21 NEVARLKKLL 30 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 97
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=81.79 E-value=0.41 Score=24.30 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 988899987434332332100123
Q gi|254780386|r 92 TTDLIDLKKVSIKNLRCHIDTEKS 115 (440)
Q Consensus 92 ~~~~l~~~~~~l~~l~~~l~~~~~ 115 (440)
....+.....++..++..+.....
T Consensus 11 ~e~el~~l~~e~~~~~~~~~~~~~ 34 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEA 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 98
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=80.13 E-value=1.4 Score=20.67 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=26.9
Q ss_pred CCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCE
Q ss_conf 4555411687312120122212444554210335565047753262231101589831
Q gi|254780386|r 291 TILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTA 348 (440)
Q Consensus 291 ~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v 348 (440)
-|+|+.||+|........+ |.. +.|--.+....+-+.+ ..+..|++|+.|
T Consensus 141 PV~A~~dG~V~~~g~~~~~-----G~~-V~I~h~~g~~t~Y~HL--~~~~~V~~G~~V 190 (252)
T 3nyy_A 141 PVVSMTDGVVTEKGWLEKG-----GWR-IGITAPTGAYFYYAHL--DSYAELEKGDPV 190 (252)
T ss_dssp EEECSSCEEEEEEEEETTT-----EEE-EEEECTTSCEEEEEEE--SEECSCCTTCEE
T ss_pred EEEEEECEEEEEEEECCCC-----CEE-EEEEECCCCEEEEEEC--CCCCCCCCCCEE
T ss_conf 4899656799985574999-----809-9999689888985135--655556889999
No 99
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=79.80 E-value=0.01 Score=34.93 Aligned_cols=201 Identities=6% Similarity=-0.067 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCC
Q ss_conf 64899888999874343323321001233332221145554223568888776554678865433---365542001122
Q gi|254780386|r 88 EDIETTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKV---FNYGISSVYRSL 164 (440)
Q Consensus 88 d~~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 164 (440)
|-.....++...+..+.....+++.....+....................+.............. +...........
T Consensus 47 ele~~~~El~~~k~~L~~~~~e~e~~~~el~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 126 (602)
T 1cii_A 47 DIEKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADITRQEFRLLQAELREYGFRT 126 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999899999999999999999889
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 21122100223210112232222221023333222101222222111000011100246665310122332222222222
Q gi|254780386|r 165 KMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHI 244 (440)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l 244 (440)
.........+......+......+.......+..+..+.............+.............+.....+........
T Consensus 127 ~~~~~~~~~l~~e~~~l~~~~~~l~~~~~el~~~~e~l~~~~~~le~~~~~l~~~~~~~e~~~~~l~~~~~el~~~~~~~ 206 (602)
T 1cii_A 127 EIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSELEKNGGAA 206 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999999999999999999999999999999999999999999999999999999998877767999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21000122333211233222122222222122233221222221
Q gi|254780386|r 245 NELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTRE 288 (440)
Q Consensus 245 ~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~~~~l~~l~~~l~ 288 (440)
..........+......+...+.+.+..+..+...+..+...+.
T Consensus 207 ~~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~~l~ 250 (602)
T 1cii_A 207 LAVLDAQQARLLGQQTRNDRAISEARNKLSSVTESLNTARNALT 250 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998999999999899999999999999999
No 100
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography, contractIle protein/transport protein complex; 24.00A {Gallus gallus}
Probab=79.29 E-value=0.02 Score=33.04 Aligned_cols=199 Identities=8% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99888999874343323321001233332221145554223568888776554678865433365542001122211221
Q gi|254780386|r 91 ETTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTR 170 (440)
Q Consensus 91 ~~~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (440)
+........+..+....+..........................+........+......+........+.........+
T Consensus 850 R~~~aRke~~~~~~e~~a~~iQ~~~R~~~~r~~~~~~~k~~i~lQ~~~r~~~ar~el~~Lk~e~~~~e~lq~~~~~LE~k 929 (1080)
T 2dfs_A 850 RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENK 929 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77776321789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00223210112232222221023333222101222222111000011100246665310122332222222222210001
Q gi|254780386|r 171 MRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDE 250 (440)
Q Consensus 171 ~~~~~~~~~~l~~~~~~l~~~~~~~~~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~ 250 (440)
...+.....+.+.+...+...+...+.++......++......................++..++.....+..+......
T Consensus 930 l~eLq~klee~e~e~~~L~~kl~~le~~~~~e~e~L~~~~e~le~~~~e~~~~~~~~~~lqeEl~~l~~el~~~~~e~~~ 1009 (1080)
T 2dfs_A 930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009 (1080)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 223332112332221222222221222332212222212
Q gi|254780386|r 251 ANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQ 289 (440)
Q Consensus 251 ~~~~~~~~~~e~~~~l~e~~~~l~~~~~~l~~l~~~l~~ 289 (440)
++.+......+......+.+.....+......++.++..
T Consensus 1010 Lee~~~~~~~ele~l~~eL~e~~~~L~~e~eeL~~~l~e 1048 (1080)
T 2dfs_A 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999
No 101
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=77.34 E-value=1.3 Score=20.85 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCEEEEECCEEECCCCC
Q ss_conf 22123455541168731212012221
Q gi|254780386|r 286 TREQKTILSPIAGTIVYNQSFSSSNY 311 (440)
Q Consensus 286 ~l~~~~I~AP~~G~V~~l~~~~~G~~ 311 (440)
.....+|+||.+|+|..++....|..
T Consensus 369 a~~~~~i~a~~~G~i~~id~~~lg~~ 394 (474)
T 1uou_A 369 AREQEELLAPADGTVELVRALPLALV 394 (474)
T ss_dssp CSEEEEEECSSCEEEEEECHHHHHHH
T ss_pred CCEEEEEECCCCEEEEEEEHHHHHHH
T ss_conf 77368997489869998536999999
No 102
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli K12} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=77.27 E-value=0.82 Score=22.30 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=14.0
Q ss_pred CCCCCCCCCCEEEEECCEE
Q ss_conf 2123455541168731212
Q gi|254780386|r 287 REQKTILSPIAGTIVYNQS 305 (440)
Q Consensus 287 l~~~~I~AP~~G~V~~l~~ 305 (440)
.....|+||.+|+|..++.
T Consensus 338 ~~~~~i~a~~~G~i~~i~~ 356 (440)
T 2tpt_A 338 MLTKAVYADTEGFVSEMDT 356 (440)
T ss_dssp SEEEEECCSSCEEEEEECH
T ss_pred CEEEEEEECCCEEEEEECH
T ss_conf 6369998568858988518
No 103
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=76.98 E-value=0.3 Score=25.21 Aligned_cols=145 Identities=9% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 874343323321001233332221145554223568888776554678865433--365542001122211221002232
Q gi|254780386|r 99 KKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKV--FNYGISSVYRSLKMKLTRMRSIYL 176 (440)
Q Consensus 99 ~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 176 (440)
+..++..+..++......+..+......+..........+.............. .....................+..
T Consensus 1 L~~~i~~le~el~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 80 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97879999999999999999999999999999999999999999999988999999999999999999999999999998
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 1011223222222102333322210122222211100001110024666531012233222222222
Q gi|254780386|r 177 NRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRH 243 (440)
Q Consensus 177 ~~~~l~~~~~~l~~~~~~~~~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~ 243 (440)
....+......+...+......+..+.............+......+......+...+..+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~le~ei~~L~k~l~E 147 (147)
T 2b9c_A 81 KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVGE 147 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9988888899999999999998999999999999779999999999999999999999999966673
No 104
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.90 E-value=0.15 Score=27.12 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=13.5
Q ss_pred EEEEECHHHHHHCCCCCCEE
Q ss_conf 77532622311015898317
Q gi|254780386|r 330 IRAKVTPKQIQHVKKGYTAT 349 (440)
Q Consensus 330 v~~~v~~~di~~i~~Gq~v~ 349 (440)
.-+.||+..+..|+.|..+.
T Consensus 204 C~~~l~~~~~~~~~~~~~i~ 223 (256)
T 3na7_A 204 CFIRLNDKIYTEVLTSGDMI 223 (256)
T ss_dssp TCCBCCHHHHHHHHHSSSCE
T ss_pred CCCCCCHHHHHHHHCCCCEE
T ss_conf 78243899999988599904
No 105
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=76.35 E-value=1.3 Score=20.96 Aligned_cols=13 Identities=15% Similarity=-0.128 Sum_probs=6.3
Q ss_pred EHHHHHHHHHHHHH
Q ss_conf 47999999999899
Q gi|254780386|r 421 TLAQEIIHPITDNW 434 (440)
Q Consensus 421 ~~~~~~~~p~~~~~ 434 (440)
|+|.|+. .|++-.
T Consensus 553 ~fw~w~~-~~~~~~ 565 (683)
T 1yvl_A 553 PFWLWIE-SILELI 565 (683)
T ss_dssp CHHHHHH-HHHHHH
T ss_pred CHHHHHH-HHHHHH
T ss_conf 7799999-999999
No 106
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=75.37 E-value=1.1 Score=21.34 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=26.4
Q ss_pred CCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCE-EEEEEECHHHHHHCCCCCCEE
Q ss_conf 12345554116873121201222124445542103355650-477532622311015898317
Q gi|254780386|r 288 EQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLT-YIRAKVTPKQIQHVKKGYTAT 349 (440)
Q Consensus 288 ~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l-~v~~~v~~~di~~i~~Gq~v~ 349 (440)
..+.|+|+.||+|........| -|..| .|.-.+..+ .+-+.+.. + .|++||.|.
T Consensus 194 ~GtpV~A~~dG~Vv~~g~~~~g----~G~~V-iI~h~~g~~~t~Y~HL~~--i-~Vk~Gq~V~ 248 (291)
T 1qwy_A 194 ENSPVYSLTDGTVVQAGWSNYG----GGNQV-TIKEANSNNYQWYMHNNR--L-TVSAGDKVK 248 (291)
T ss_dssp TTCEEECSSSEEEEEEEEETTT----TEEEE-EEEETTSSEEEEEEEESE--E-CCCTTCEEC
T ss_pred CCCEEEECCCEEEEEEEECCCC----CCEEE-EEEECCCCEEEEEEECCC--C-CCCCCCEEC
T ss_conf 9996980128799998874678----98699-998489988999787882--5-668889999
No 107
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=74.98 E-value=1.6 Score=20.37 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEECCCC
Q ss_conf 2222212345554116873121201222
Q gi|254780386|r 283 LEKTREQKTILSPIAGTIVYNQSFSSSN 310 (440)
Q Consensus 283 l~~~l~~~~I~AP~~G~V~~l~~~~~G~ 310 (440)
+-.......|+||.+|+|..++....|.
T Consensus 329 ~~~~~~~~~i~a~~~G~i~~id~~~ig~ 356 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGT 356 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHH
T ss_pred CCCCCEEEEEECCCCEEEEEECHHHHHH
T ss_conf 5888756999738997998754999999
No 108
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.33 E-value=0.28 Score=25.41 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9987434332332100123333222114555422356
Q gi|254780386|r 97 DLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFES 133 (440)
Q Consensus 97 ~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~ 133 (440)
.....++..+...+......++.+..+.......+..
T Consensus 14 q~ld~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 50 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILN 50 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999
No 109
>3mmp_A Elongation factor TU 2, elongation factor TS; RDRP,HOST-factor complex, translation, transferase; HET: PXN; 2.50A {Escherichia coli}
Probab=73.27 E-value=3.5 Score=18.08 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=53.3
Q ss_pred EEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEE---EEEECHHHHHHCCCCCCEEEEEEECCC---------------C
Q ss_conf 1687312120122212444554210335565047---753262231101589831799981288---------------7
Q gi|254780386|r 297 AGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYI---RAKVTPKQIQHVKKGYTATVRFPHYAD---------------I 358 (440)
Q Consensus 297 ~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v---~~~v~~~di~~i~~Gq~v~i~~~a~~~---------------~ 358 (440)
.|+|....+ ..+.+..|+.+. |+|......+ ..++...++.....|+.|.+.+...+. .
T Consensus 508 ~G~Vv~G~V--~sG~lk~Gd~v~-i~p~~~~~~~~V~sI~~~~~~v~~a~aGd~v~l~L~gi~~~di~rGdvL~~~~~~~ 584 (678)
T 3mmp_A 508 RGTVVTGRV--ERGIIKVGEEVE-IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIK 584 (678)
T ss_dssp TEEEEEEEC--CBSEEETTCEEE-EESSSCCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEECTTSCC
T ss_pred CCEEEEEEE--EEEEEECCCEEE-EECCCCCEEEEEEEEEECCCCCCEECCCCEEEEEECCCCHHHCCCCCEEEECCCCC
T ss_conf 628999999--862795199999-94189842899999995882057854898899998799788679853999799988
Q ss_pred CCCEEEEEEEEEECCCCCCCCC-CCCC--EEE----EEEEEECHHHCCCCCCEECCCCEEEEEEEECE
Q ss_conf 5443999999971334446777-6551--189----99999350112567851523775699999220
Q gi|254780386|r 359 REKKFKAIIEKIDPIISQQDNN-LQTQ--EYY----EVILKITDLAFSDNNIELRNGFPAEVLFTAKN 419 (440)
Q Consensus 359 ~~~~~~G~V~~Is~~~~~~~~~-~~~~--~~y----~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~ 419 (440)
....|.++|...+......... ..+. .+| .+...+. ...+...+++|-.+.+.+.+.+
T Consensus 585 p~~~F~a~i~vL~~~~~~~~~pl~~G~~~~l~~gt~~~~~~I~---~~~~~~~l~~gd~a~V~~~l~~ 649 (678)
T 3mmp_A 585 PHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE---LPEGVEMVMPGDNIKMVVTLIH 649 (678)
T ss_dssp EEEEEEEEEEECCTTTTSCSSCBCTTCCCEEEETTEEEEEEEE---CCTTCCCBCTTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCEEEEEEE---ECCCCCCCCCCCEEEEEEEECC
T ss_conf 7238999999952776667775358967999998789999999---0688111389997999999896
No 110
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=68.55 E-value=4.4 Score=17.40 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=52.1
Q ss_pred CCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHH--HHHHCCCCCCEEEEEEEC--------CC---CCCC
Q ss_conf 4116873121201222124445542103355650477532622--311015898317999812--------88---7544
Q gi|254780386|r 295 PIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPK--QIQHVKKGYTATVRFPHY--------AD---IREK 361 (440)
Q Consensus 295 P~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~--di~~i~~Gq~v~i~~~a~--------~~---~~~~ 361 (440)
.+.|+|..+.. |... ..+.+. ......+.+-|... +-..+.+|+.|.+.+.+- +. .--.
T Consensus 11 ~~~G~V~~i~~---~~~~----~~V~~~-~~~g~~i~a~it~~s~~~l~L~~G~~V~~~ika~~v~l~~~~~~~~~S~~N 82 (145)
T 1h9m_A 11 VFKGTVSALKE---GAVN----AEVDIL-LGGGDKLAAVVTLESARSLQLAAGKEVVAVVKAPWVLLMTDSSGYRLSARN 82 (145)
T ss_dssp EEEEEEEEEEE---CSSE----EEEEEE-ESSSCEEEEEEEHHHHHHTTCCTTCEEEEEECGGGCEEESCCTTCCCSCSE
T ss_pred CEEEEEEEEEE---CCCE----EEEEEE-ECCCCEEEEEECHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 01789999981---8836----899999-799969999952566554168889889999742642100247768768788
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEC----------HHHCCCCCCEECCCCEEEEEEEEC
Q ss_conf 399999997133444677765511899999935----------011256785152377569999922
Q gi|254780386|r 362 KFKAIIEKIDPIISQQDNNLQTQEYYEVILKIT----------DLAFSDNNIELRNGFPAEVLFTAK 418 (440)
Q Consensus 362 ~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~----------~~~~~~~~~~L~~Gm~~~~~I~~~ 418 (440)
.|+|+|..|.+.... +.|.+.++ ...+ .+..|.+|+.+.+.|+.-
T Consensus 83 ~l~g~V~~i~~~~~~----------~~V~v~~~~g~~l~a~it~~s~--~~L~L~~G~~V~a~~Kas 137 (145)
T 1h9m_A 83 ILTGTVKTIETGAVN----------AEVTLALQGGTEITSMVTKEAV--AELGLKPGASASAVIKAS 137 (145)
T ss_dssp EEEEEEEEEEECSSE----------EEEEEEETTSCEEEEEEEHHHH--HHTTCCTTCEEEEEECGG
T ss_pred EEEEEEEEEEECCCC----------EEEEEEECCCCEEEEEECHHHH--HHCCCCCCCEEEEEEECC
T ss_conf 989999999979987----------8999994899899999899999--776999999999999710
No 111
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=66.29 E-value=3.5 Score=18.04 Aligned_cols=54 Identities=6% Similarity=0.189 Sum_probs=29.1
Q ss_pred CEEEEEEEEEECCCCCCCC--CCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEEC
Q ss_conf 4399999997133444677--765511899999935011256785152377569999922
Q gi|254780386|r 361 KKFKAIIEKIDPIISQQDN--NLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAK 418 (440)
Q Consensus 361 ~~~~G~V~~Is~~~~~~~~--~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~ 418 (440)
..|+|+|+.|.+......- .-.++..+.+.|+... . .+..|.||+.+-+.|+.-
T Consensus 7 N~l~g~V~~i~~~~~~~~V~~~~~~g~~l~a~IT~~s--~--~~L~L~~G~~V~a~iKA~ 62 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDS--V--EELGVKEGAELTAVVKST 62 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHH--H--HHHTCCTTCEEEEECCGG
T ss_pred CEEEEEEEEEEECCCCEEEEEEECCCCEEEEECCHHH--H--HHCCCCCCCEEEEEEEHH
T ss_conf 3888999999989985899999599999999939899--9--776999999999999844
No 112
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=63.56 E-value=5 Score=17.07 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=31.2
Q ss_pred EEEEEEEEEEEEEEEECCCEEE--------EECCC-CCEEEEEECCCCCEEECCCEEEEECHH
Q ss_conf 0671258999799995387389--------84688-868999985789893369789999648
Q gi|254780386|r 37 LLPIEISVSSSGEILNEDNVVE--------IKSPF-SGIIKKFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 37 ~~~~~~~v~~~G~i~~~~~~~~--------I~s~~-~G~V~~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
+.+.+. .++++|+...+-.. |-... +..--.+++++|+.|++|++++++...
T Consensus 72 li~~~~--~~~a~iiare~gV~~G~~~~~~vf~~l~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 132 (320)
T 3paj_A 72 LIPADR--ISTATIITREAGVFCGQLWADEVFKQLGGQVSIEWHVQDGDTLTPNQTLCTLTGP 132 (320)
T ss_dssp GSCTTC--EEEEEEEESSCEECCCHHHHHHHHHHTTSCCEEEESSCTTCEECTTCEEEEEEEE
T ss_pred CCCCCC--EEEEEEEECCCEEEECHHHHHHHHHHHCCCCEEEEECCCCCEEECCCEEEEEECC
T ss_conf 068897--7999999789999985899999999839974698881899987389689998131
No 113
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=61.78 E-value=0.68 Score=22.84 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 889998743433233210012333322211455542235688887765
Q gi|254780386|r 94 DLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDF 141 (440)
Q Consensus 94 ~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 141 (440)
..++....++..+..++......++.+...+......+......+...
T Consensus 10 ~~l~~~~~~l~~l~~q~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 57 (170)
T 3l4q_C 10 DSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAF 57 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999888767889
No 114
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=59.62 E-value=6.4 Score=16.32 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=8.1
Q ss_pred CEEEEECCEEECCCCCCC
Q ss_conf 116873121201222124
Q gi|254780386|r 296 IAGTIVYNQSFSSSNYAQ 313 (440)
Q Consensus 296 ~~G~V~~l~~~~~G~~v~ 313 (440)
++|+|+.+. .-|=+|.
T Consensus 564 f~g~I~~v~--~~G~fV~ 579 (644)
T 2id0_A 564 FAAEIVDIS--RGGMRVR 579 (644)
T ss_dssp EEEEEEEEE--TTEEEEE
T ss_pred EEEEEEEEE--CCEEEEE
T ss_conf 889999887--0609999
No 115
>3e1y_E Eukaryotic peptide chain release factor GTP- binding subunit ERF3A; translation termination, peptide release, PTC, acetylation, cytoplasm; HET: ATP; 3.80A {Homo sapiens}
Probab=59.17 E-value=6.5 Score=16.27 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEE-EEECHHHHHHCCCCCCEEEEEEE
Q ss_conf 22124445542103355650477-53262231101589831799981
Q gi|254780386|r 309 SNYAQQSQPLMKIVPHSKLTYIR-AKVTPKQIQHVKKGYTATVRFPH 354 (440)
Q Consensus 309 G~~v~~G~~l~~Ivp~~~~l~v~-~~v~~~di~~i~~Gq~v~i~~~a 354 (440)
++.+..|+.+. |.|++....|. ..+...++.....|+.|.+.+..
T Consensus 28 sG~v~~Gd~v~-i~Ps~~~~~VksI~~~~~~~~~a~aG~~v~l~L~~ 73 (204)
T 3e1y_E 28 SGSICKGQQLV-MMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKG 73 (204)
T ss_dssp BSCEESSCCEE-ETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEE
T ss_pred ECEEECCCEEE-ECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECC
T ss_conf 68592799999-96899679999999848500201688667788638
No 116
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=59.01 E-value=5 Score=17.08 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=4.7
Q ss_pred EEEECCCCCE
Q ss_conf 9998578989
Q gi|254780386|r 68 KKFQVENGSQ 77 (440)
Q Consensus 68 ~~i~VkeGd~ 77 (440)
++|+.+.|..
T Consensus 742 tkvFlr~~~~ 751 (1010)
T 1g8x_A 742 TKIFFRAGQL 751 (1010)
T ss_dssp SEEEECTTHH
T ss_pred CEEEEECHHH
T ss_conf 6388841089
No 117
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=58.45 E-value=2.6 Score=18.95 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=27.8
Q ss_pred CCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCE-EEEEEECHHHHHHCCCCCCEE
Q ss_conf 2345554116873121201222124445542103355650-477532622311015898317
Q gi|254780386|r 289 QKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLT-YIRAKVTPKQIQHVKKGYTAT 349 (440)
Q Consensus 289 ~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l-~v~~~v~~~di~~i~~Gq~v~ 349 (440)
.+-|.||.||+|..... .+.+..-|.-+.-+..+.... ....+.....+ .|++||.|+
T Consensus 202 ~~pv~A~~~G~V~~~~~--~~~~~~~~~~~~i~~~~g~~~~~~y~~~~~~~~-~v~~G~~V~ 260 (334)
T 3csq_A 202 KYPYYAPCDCTCVWRGD--ASAYLAWTSDKEVMCADGSVRYITWVNVHESPL-PFDVGKKLK 260 (334)
T ss_dssp SCEEECSSSEEEEEEET--TTTEEEEEESSCEECTTSCEECEEEEEECCSSC-CCCTTCEEC
T ss_pred CCCEEECCCEEEEEEEE--CCCCCCCCCEEEEEECCCCEEEEEEEEECCCCC-CCCCCCEEC
T ss_conf 98589789989999972--687553178699997899805999997344645-688898976
No 118
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=58.14 E-value=6.8 Score=16.16 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCE
Q ss_conf 122212444554210335565047753262231101589831
Q gi|254780386|r 307 SSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTA 348 (440)
Q Consensus 307 ~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v 348 (440)
..|-++.+|+.|+-+ | -..+.| ++-...-..|..|...
T Consensus 91 ~~~~~l~kGt~L~lv-p-aeG~~v--~~i~~~G~rV~~gd~l 128 (169)
T 3d4r_A 91 HTLTYLKAGTKLISV-P-AEGYKV--YPIMDFGFRVLKGYRL 128 (169)
T ss_dssp SEEEEECTTCBCEEE-E-ECSSEE--EECCCCSEEECTTCEE
T ss_pred CEEEEECCCCEEEEE-E-CCCEEE--EEECCCCCEECCCCEE
T ss_conf 168998699999999-8-085699--9975755376148727
No 119
>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=57.53 E-value=6.3 Score=16.40 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCEEECCCEEEEECHH
Q ss_conf 68999985789893369789999648
Q gi|254780386|r 65 GIIKKFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 65 G~V~~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
|.-.++++++|+.|++|++++++...
T Consensus 70 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 95 (285)
T 1o4u_A 70 GLLSKFNVEDGEYLEGTGVIGEIEGN 95 (285)
T ss_dssp TCEEEESCCTTCEEESCEEEEEEEEE
T ss_pred CCEEEEEECCCCEECCCCEEEEEEEC
T ss_conf 98799992799882178378999966
No 120
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8}
Probab=57.46 E-value=5.5 Score=16.78 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.1
Q ss_pred EEEEEECCCCCEEECCCEEEEECHH
Q ss_conf 8999985789893369789999648
Q gi|254780386|r 66 IIKKFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 66 ~V~~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
.--.+++++|+.|++|++++++...
T Consensus 72 ~~v~~~~~dG~~v~~g~~i~~i~G~ 96 (286)
T 1x1o_A 72 TAFTPLVAEGARVAEGTEVARVRGP 96 (286)
T ss_dssp CEEEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEEECCCCCEECCCCEEEEEEEC
T ss_conf 4898784899886589899999977
No 121
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A*
Probab=56.56 E-value=4.3 Score=17.46 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=8.5
Q ss_pred CCCCCCCCEEEEEC
Q ss_conf 23455541168731
Q gi|254780386|r 289 QKTILSPIAGTIVY 302 (440)
Q Consensus 289 ~~~I~AP~~G~V~~ 302 (440)
-..|+|+.+|+|..
T Consensus 48 g~~V~a~~~G~V~~ 61 (182)
T 3it5_A 48 TYSVVAAHAGTVRV 61 (182)
T ss_dssp CCEEECSSSEEEEE
T ss_pred CCEEEEEECCCEEE
T ss_conf 99799974687799
No 122
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=56.09 E-value=1.8 Score=20.01 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 8899987434332332100123333222114555422
Q gi|254780386|r 94 DLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKA 130 (440)
Q Consensus 94 ~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~ 130 (440)
..+++....+..+...++.....+.........+...
T Consensus 6 ~k~eE~~~kl~~~e~ele~~e~~~e~~e~~~~eleee 42 (107)
T 2wps_A 6 DKIEEILSKIYHIENEIARIKKLIEKVDQNTADITTN 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999989999999
No 123
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=55.89 E-value=7.4 Score=15.91 Aligned_cols=26 Identities=8% Similarity=0.201 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCEEECCCEEEEECHH
Q ss_conf 68999985789893369789999648
Q gi|254780386|r 65 GIIKKFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 65 G~V~~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
+.--.+++++|+.|++|++++++...
T Consensus 85 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 110 (298)
T 3gnn_A 85 SIEVDWRHREGDRMSADSTVCELRGP 110 (298)
T ss_dssp TCEEEESSCTTCEECTTCEEEEEEEE
T ss_pred CCEEEEECCCCCEEECCCEEEEEEEC
T ss_conf 62687664889896379889999967
No 124
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=55.62 E-value=7.5 Score=15.89 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=26.6
Q ss_pred CEEEEEEEEEECCCCCCCCC-CCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEEC
Q ss_conf 43999999971334446777-65511899999935011256785152377569999922
Q gi|254780386|r 361 KKFKAIIEKIDPIISQQDNN-LQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAK 418 (440)
Q Consensus 361 ~~~~G~V~~Is~~~~~~~~~-~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~ 418 (440)
..|+|+|+.|.+......-. .-++..+.+.|+.. +. .+..|.||+.+-+.|+.-
T Consensus 7 N~l~g~V~~i~~~~~~~~V~l~~g~~~l~a~IT~~--s~--~~L~L~~G~~V~a~iKA~ 61 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITID--SV--ADLDLVPGDKVTALVKAT 61 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHH--HH--HHHTCCTTCEEEEEECGG
T ss_pred CEEEEEEEEEEECCCEEEEEEECCCCEEEEEECHH--HH--HHCCCCCCCEEEEEEECC
T ss_conf 48999999999899839999992897999994989--99--767999999999999923
No 125
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=53.75 E-value=4.5 Score=17.35 Aligned_cols=10 Identities=20% Similarity=0.059 Sum_probs=4.7
Q ss_pred EEEEEEEEEC
Q ss_conf 9999999713
Q gi|254780386|r 363 FKAIIEKIDP 372 (440)
Q Consensus 363 ~~G~V~~Is~ 372 (440)
..|+|+.|.+
T Consensus 175 ~~G~I~~I~~ 184 (251)
T 1e2w_A 175 AAGKIVAITA 184 (251)
T ss_dssp SCEEEEEEEE
T ss_pred CCEEEEEEEE
T ss_conf 7758888776
No 126
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=53.68 E-value=8 Score=15.68 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=7.5
Q ss_pred CCCCCCCCEEEEECCE
Q ss_conf 2345554116873121
Q gi|254780386|r 289 QKTILSPIAGTIVYNQ 304 (440)
Q Consensus 289 ~~~I~AP~~G~V~~l~ 304 (440)
++.+.||.+|+|..+.
T Consensus 168 N~a~~As~aGtIs~I~ 183 (292)
T 1q90_A 168 NTIYNASAAGKIVAIT 183 (292)
T ss_dssp TSCCBCSSSEEEEEEE
T ss_pred CCEEECCCCEEEEEEE
T ss_conf 8668167875998854
No 127
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=53.37 E-value=7.4 Score=15.91 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEECCCCCEEECCCEEEEECHH
Q ss_conf 99985789893369789999648
Q gi|254780386|r 68 KKFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 68 ~~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
-.+++++|+.|++|++++++...
T Consensus 87 v~~~~~dG~~v~~g~~i~~i~G~ 109 (296)
T 1qap_A 87 LTWHVDDGDAIHANQTVFELQGP 109 (296)
T ss_dssp EEESCCTTCEECTTCEEEEEEEE
T ss_pred EEEECCCCCEEECCCEEEEEEEC
T ss_conf 99964898588718657999955
No 128
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=52.88 E-value=8.2 Score=15.60 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=29.4
Q ss_pred EEEEEEEEECCCEEEEE-----------CCCCCEEEEEECCCCCEEECCCEEEEECHH
Q ss_conf 99979999538738984-----------688868999985789893369789999648
Q gi|254780386|r 44 VSSSGEILNEDNVVEIK-----------SPFSGIIKKFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 44 v~~~G~i~~~~~~~~I~-----------s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
..+++.+.+..+-..-- .+..|.=-.+++++|+.|++|++++++...
T Consensus 38 ~~~~a~i~are~gV~~G~~~a~~~f~~l~~~~~~~v~~~~~dG~~v~~g~~il~i~G~ 95 (284)
T 1qpo_A 38 ATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPGEALMTLEAQ 95 (284)
T ss_dssp CEEEEEEEESSCEECCCHHHHHHHHHHHHCTTSEEEEEECCTTCEECTTCEEEEEEEE
T ss_pred CEEEEEEEECCCEEEECHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCEEEEEEEC
T ss_conf 7599999968998998099999999985566673798882889998648679999988
No 129
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=52.16 E-value=0.21 Score=26.25 Aligned_cols=196 Identities=9% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89988899987434332332100123333222114555422356888877655467886543336554200112221122
Q gi|254780386|r 90 IETTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLT 169 (440)
Q Consensus 90 ~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (440)
..........+..+......+....................+......+............+.+..........+.....
T Consensus 460 ~~L~~~~~~~~~~Le~~~~~~~~l~~~~~e~~~~~~~l~~~le~~~~~l~~~~~~~~~~ei~~L~~~~e~~~~~l~e~~~ 539 (863)
T 1sjj_A 460 DNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADK 539 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHCCCCCSSSGGGHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98735778999989999999999999999999988889999999887877888886799988789999999999999999
Q ss_pred CCHHHHHHCCCCCCCCCCCCCHH-----------HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 10022321011223222222102-----------3333222101222222111000011100246665310122332222
Q gi|254780386|r 170 RMRSIYLNRLDLENKSSLLRALL-----------SSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQK 238 (440)
Q Consensus 170 ~~~~~~~~~~~l~~~~~~l~~~~-----------~~~~~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~ 238 (440)
....+.....++......+.... .........+..+..+....................++........
T Consensus 540 e~~~l~~~~~el~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~l~~~~~e~~~~l~~e~~~~~~~e~l~~~~~~~~~~~~ 619 (863)
T 1sjj_A 540 ERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIG 619 (863)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998888877566675799999999999999999999999999998999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222221000122333211233222122222222122233221222
Q gi|254780386|r 239 NMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEK 285 (440)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~~~~l~~l~~ 285 (440)
..+............+......+....+...+..+..+..++..++.
T Consensus 620 ~~Le~~~~~l~~~~~e~~~~le~~~e~lk~le~el~~lk~~l~~LE~ 666 (863)
T 1sjj_A 620 PWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEG 666 (863)
T ss_dssp HHHHHHHHHTTSCTTCTTTSSHHHHHHHHHHHHHHHTTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999899998857999999999999999999999999999
No 130
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=51.59 E-value=0.26 Score=25.68 Aligned_cols=181 Identities=10% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCC
Q ss_conf 899888999874343323321001233332221145554223568888776554678865433--365542001122211
Q gi|254780386|r 90 IETTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKV--FNYGISSVYRSLKMK 167 (440)
Q Consensus 90 ~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 167 (440)
......+......+..+...+......+..+..........+......+.............. ....+..+.......
T Consensus 100 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (284)
T 1c1g_A 100 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERA 179 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88765799999887643545899988888888888778999998887799999999988875899999998676579999
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 22100223210112232222221023333222101222222111000011100246665310122332222222222210
Q gi|254780386|r 168 LTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINEL 247 (440)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~ 247 (440)
.............+......+...+......+................+.............+......+...+..+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 259 (284)
T 1c1g_A 180 EERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 259 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999888754999999999987899999999865788999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00122333211233222122222
Q gi|254780386|r 248 YDEANLEFANYLKEISRDLEQNQ 270 (440)
Q Consensus 248 ~~~~~~~~~~~~~e~~~~l~e~~ 270 (440)
+............++...+.+..
T Consensus 260 l~~~~~~~~~l~~eL~~~~~el~ 282 (284)
T 1c1g_A 260 LYAQKLKYKAISEELDHALNDMT 282 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999876
No 131
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=51.21 E-value=8.8 Score=15.43 Aligned_cols=22 Identities=5% Similarity=0.080 Sum_probs=19.7
Q ss_pred EEECCCCCEEECCCEEEEECHH
Q ss_conf 9985789893369789999648
Q gi|254780386|r 69 KFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 69 ~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
.+++++|+.|++|++++++...
T Consensus 61 ~~~~~dG~~v~~g~~Il~i~G~ 82 (273)
T 2b7n_A 61 VQTIKDKERFKPKDALMEIRGD 82 (273)
T ss_dssp EEECCTTCEECTTCEEEEEEEE
T ss_pred EEEECCCCEEECCCEEEEEEEH
T ss_conf 8973376375089899999860
No 132
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=50.18 E-value=9.1 Score=15.32 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHH-----HHCCCCCCEEEEEEECC
Q ss_conf 5411687312120122212444554210335565047753262231-----10158983179998128
Q gi|254780386|r 294 SPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQI-----QHVKKGYTATVRFPHYA 356 (440)
Q Consensus 294 AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di-----~~i~~Gq~v~i~~~a~~ 356 (440)
.-+.|+|..+. .-|.+|.-+.. +++.+|.+++ ..+++|+.+.+++...+
T Consensus 7 ~iv~G~V~~i~--~~G~fV~l~~~------------i~Glv~~sels~~~~~~~~~Gd~v~vkV~~vd 60 (80)
T 2k52_A 7 KFYKGVVTRIE--KYGAFINLNEQ------------VRGLLRPRDMISLRLENLNVGDEIIVQAIDVR 60 (80)
T ss_dssp CEEEEEEEEEE--TTEEEEEEETT------------EEEEECGGGCSSCCGGGCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEE--CCEEEEECCCC------------EEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 99999999996--75799992999------------89999979938851216889998999999998
No 133
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=49.70 E-value=1.9 Score=19.84 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCEE
Q ss_conf 22221222332212222212345554116873121201222124445542103355650477532622311015898317
Q gi|254780386|r 270 QRTFADEMSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTAT 349 (440)
Q Consensus 270 ~~~l~~~~~~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~ 349 (440)
+.++.+++.++..+++++++..--.-.=|+|.... ..+.-++.. ..+..++|. --|..|...+++|+.|-
T Consensus 13 e~~~~~l~~ei~~Lk~el~~l~~pP~~ig~v~e~~--------dd~~~iV~~-s~g~~~~V~-v~~~id~~~L~pG~rVa 82 (109)
T 2wg5_A 13 EDKVEELLSKNYHLENEVARLRSPPLLVGVVSDIL--------EDGRVVVKS-STGPKFVVN-TSQYINEEELKPGARVA 82 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEEC--------TTSCEEEEE-TTSCEEEEC-BCTTSCTTTCCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE--------CCCEEEEEE-CCCCEEEEE-ECCCCCHHHCCCCCEEE
T ss_conf 99999999999999999998549995799999996--------798189996-799889998-20651889989999999
Q ss_pred EE
Q ss_conf 99
Q gi|254780386|r 350 VR 351 (440)
Q Consensus 350 i~ 351 (440)
+.
T Consensus 83 Ln 84 (109)
T 2wg5_A 83 LN 84 (109)
T ss_dssp EE
T ss_pred EC
T ss_conf 98
No 134
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
Probab=48.76 E-value=9.5 Score=15.18 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=21.7
Q ss_pred CCCEEEEEECCCCCEEECCCEEEEECHH
Q ss_conf 8868999985789893369789999648
Q gi|254780386|r 63 FSGIIKKFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 63 ~~G~V~~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
.+-.| ++++++|+.|++|++++++...
T Consensus 69 ~~~~v-~~~~~dG~~v~~g~~I~~i~G~ 95 (299)
T 2jbm_A 69 LNCQV-SWFLPEGSKLVPVARVAEVRGP 95 (299)
T ss_dssp TTCEE-EESSCTTCEECSSEEEEEEEEE
T ss_pred CCCEE-EEEECCCCEEECCCEEEEEEEC
T ss_conf 69789-9996679988538579999707
No 135
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, periplasm, metal-binding, metal transport, copper tolerance, copper transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=46.39 E-value=10 Score=14.94 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=36.1
Q ss_pred CCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE-CHHHHHHCCCCCCEEEEEEE
Q ss_conf 4116873121201222124445542103355650477532-62231101589831799981
Q gi|254780386|r 295 PIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKV-TPKQIQHVKKGYTATVRFPH 354 (440)
Q Consensus 295 P~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v-~~~di~~i~~Gq~v~i~~~a 354 (440)
...|+|..++. ..|.+.=.=.||-.+ .-..+.....+ +..++..+++|+.|.+.|.-
T Consensus 17 ~~~G~V~~vd~-~~~~iti~H~pIp~l--~wPaMTM~F~v~~~~~l~~l~~Gd~V~f~~~~ 74 (88)
T 2vb2_X 17 SATGVVKGIDL-ESKKITIHHDPIAAV--NWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp EEEEEEEEEET-TTTEEEEEECCBGGG--TBCSEEEEEECCTTCEECCCCTTCEEEEEEEE
T ss_pred EEEEEEEEECC-CCCEEEEECCCCCCC--CCCCEEEEEECCCHHHHHCCCCCCEEEEEEEE
T ss_conf 88899999837-899899967774617--99861888787895476349999999999998
No 136
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=44.98 E-value=6.9 Score=16.12 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=7.0
Q ss_pred CCCCCEEEEEECCCCCEE
Q ss_conf 688868999985789893
Q gi|254780386|r 61 SPFSGIIKKFQVENGSQI 78 (440)
Q Consensus 61 s~~~G~V~~i~VkeGd~V 78 (440)
++.-|. |+=+.|...
T Consensus 57 ~~~RG~---IyDrnG~~L 71 (680)
T 2wad_A 57 SSARGE---IYDASGKPL 71 (680)
T ss_dssp CCCCCC---EECTTSCBS
T ss_pred CCCCCE---EECCCCCEE
T ss_conf 388983---991899998
No 137
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, target SGR42, PSI, protein structure initiative; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=43.28 E-value=11 Score=14.65 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCCCCCEEEEEEECCCCCCCEEEEEEEEEECC
Q ss_conf 15898317999812887544399999997133
Q gi|254780386|r 342 VKKGYTATVRFPHYADIREKKFKAIIEKIDPI 373 (440)
Q Consensus 342 i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is~~ 373 (440)
|-||+.|+|+ -|.+.|-.|.|-|.+|+..
T Consensus 2 ILPG~~V~V~---n~~~~Y~gy~G~VQRvsdg 30 (66)
T 2jz2_A 2 IFPGATVRVT---NVDDTYYRFEGLVQRVSDG 30 (66)
T ss_dssp CCTTCEEEEC---CTTSTTBTCEEEEEEEETT
T ss_pred CCCCCEEEEE---CCCCCEEHEEEEEEEECCC
T ss_conf 3599889986---8988600105899994199
No 138
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=43.27 E-value=12 Score=14.63 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCEEECCCEEEEECHH
Q ss_conf 868999985789893369789999648
Q gi|254780386|r 64 SGIIKKFQVENGSQILQGTPLLTFEDI 90 (440)
Q Consensus 64 ~G~V~~i~VkeGd~VkkGq~L~~ld~~ 90 (440)
.+.--.+++++|+.|++|++++++...
T Consensus 82 ~~~~~~~~~~dG~~v~~g~~i~~i~G~ 108 (300)
T 3l0g_A 82 EHVKYEIHKKDGDITGKNSTLVSGEAL 108 (300)
T ss_dssp TTEEEEECCCTTCEECSSCEEEEEEEE
T ss_pred CCEEEEEEECCCCEEECCCEEEEEEEH
T ss_conf 967999981799962124008999407
No 139
>3i00_A HIP-I, huntingtin-interacting protein 1; coiled coil, transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=42.37 E-value=7.1 Score=16.02 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 8899987434332332100
Q gi|254780386|r 94 DLIDLKKVSIKNLRCHIDT 112 (440)
Q Consensus 94 ~~l~~~~~~l~~l~~~l~~ 112 (440)
..++.++..+..++.++..
T Consensus 15 ~~ie~l~~~~~~l~~e~e~ 33 (120)
T 3i00_A 15 HLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 140
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=39.90 E-value=13 Score=14.29 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=31.0
Q ss_pred EECHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHH
Q ss_conf 3262231101589831799981288754439999999713344467776551189999993501
Q gi|254780386|r 333 KVTPKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDL 396 (440)
Q Consensus 333 ~v~~~di~~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~ 396 (440)
.+|+.+-..+++|+.|.|. . .+.+.|+|.+|.+..... +.+ |=|++++.
T Consensus 9 ~~pp~~~~~l~vG~rV~V~----~---~~~~~G~VryvG~~~~~~------g~~--vGVeldd~ 57 (104)
T 1ixd_A 9 AMPPGNSHGLEVGSLAEVK----E---NPPFYGVIRWIGQPPGLN------EVL--AGLELEDE 57 (104)
T ss_dssp CCTTTSSSCCCTTSEEEEC----S---SSCCCEEEEEEECCSSSC------CCE--EEEEESSC
T ss_pred CCCCCCCCCCCCCCEEEEC----C---CCCEEEEEEEEECCCCCC------CEE--EEEEECCC
T ss_conf 5899887788268988989----9---896079998974079989------709--99997688
No 141
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metalloprotein, metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=39.45 E-value=13 Score=14.24 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=39.5
Q ss_pred CEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEC-HHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEEEC
Q ss_conf 1168731212012221244455421033556504775326-2231101589831799981288754439999999713
Q gi|254780386|r 296 IAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVT-PKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDP 372 (440)
Q Consensus 296 ~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~-~~di~~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is~ 372 (440)
..|+|..++. ..|.+.=.-.+|-.+ .-..+.-...+. ..+...+++|+.|.+.|.- . .+.+ .|+.|-|
T Consensus 10 ~~G~V~~vd~-~~~~iti~H~~Ip~l--~wPaMTM~F~v~~~~~l~~l~~Gd~V~F~~~~-~---~~~~--~i~~i~~ 78 (80)
T 2qcp_X 10 ATGVVKGIDL-ESKKITIHHDPIAAV--NWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQ-Q---GNLS--LLQDIKV 78 (80)
T ss_dssp EEEEEEEEET-TTTEEEEEECCBGGG--TBCSEEEEEECCTTCEECCCCTTCEEEEEEEE-E---TTEE--EEEEEEE
T ss_pred EEEEEEEECC-CCCEEEEECCCCCCC--CCCCEEEEEECCCHHHHHCCCCCCEEEEEEEE-C---CCEE--EEEEEEE
T ss_conf 8899999857-899899977771307--99864888685896787369999999999998-0---9939--9999997
No 142
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=38.50 E-value=14 Score=14.15 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=20.4
Q ss_pred HHCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCC
Q ss_conf 101589831799981288754439999999713344
Q gi|254780386|r 340 QHVKKGYTATVRFPHYADIREKKFKAIIEKIDPIIS 375 (440)
Q Consensus 340 ~~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is~~~~ 375 (440)
..+++|+.|.| + |...|+|.+|+++..
T Consensus 37 ~~~~vG~rV~v-----~----g~~~G~VrfiG~~~f 63 (172)
T 2cp6_A 37 RELKIGDRVLV-----G----GTKAGVVRFLGETDF 63 (172)
T ss_dssp SCCCSSCEEEE-----T----TTEEEEEEEEEECSS
T ss_pred CCCEECCEEEE-----C----CCCEEEEEEECCCCC
T ss_conf 78610898898-----9----984599988167689
No 143
>3bz1_I Photosystem II reaction center protein I; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_I* 2axt_I* 3bz2_I* 3kzi_I* 3a0b_I* 3a0h_I*
Probab=35.27 E-value=15 Score=13.82 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHEE
Q ss_conf 68999999999999999876406
Q gi|254780386|r 16 SLKRMTLLSIIGIIGLITWSILL 38 (440)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~w~~~~ 38 (440)
..+++.|.++++|+++.++.+++
T Consensus 3 tLKi~Vy~vV~fFv~lFiFGFLS 25 (38)
T 3bz1_I 3 TLKITVYIVVTFFVLLFVFGFLS 25 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEHHHHHHHHHHHHHHHHCC
T ss_conf 38864267899999999885305
No 144
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=34.53 E-value=16 Score=13.74 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=4.6
Q ss_pred HHHHCCCCCCE
Q ss_conf 31101589831
Q gi|254780386|r 338 QIQHVKKGYTA 348 (440)
Q Consensus 338 di~~i~~Gq~v 348 (440)
+|+.+.+|+.|
T Consensus 4 kI~~L~~g~~v 14 (97)
T 3e0e_A 4 KISELMPNLSG 14 (97)
T ss_dssp CGGGCCTTEEE
T ss_pred CHHHCCCCCEE
T ss_conf 58998999838
No 145
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=33.99 E-value=16 Score=13.68 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=9.8
Q ss_pred CCEEEEEECCCCCEEE
Q ss_conf 8689999857898933
Q gi|254780386|r 64 SGIIKKFQVENGSQIL 79 (440)
Q Consensus 64 ~G~V~~i~VkeGd~Vk 79 (440)
+=.|.++.+.||...-
T Consensus 47 ~~~i~~lv~SEG~~if 62 (246)
T 1z56_A 47 GLRIEKMLVSEGTGIF 62 (246)
T ss_dssp ----------------
T ss_pred HHHHHHHHHCCCCCCC
T ss_conf 1203544414774532
No 146
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=33.10 E-value=17 Score=13.59 Aligned_cols=52 Identities=12% Similarity=0.016 Sum_probs=31.0
Q ss_pred CCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHH----------HHCCCCCCEEEEEEECCCC
Q ss_conf 5411687312120122212444554210335565047753262231----------1015898317999812887
Q gi|254780386|r 294 SPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQI----------QHVKKGYTATVRFPHYADI 358 (440)
Q Consensus 294 AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di----------~~i~~Gq~v~i~~~a~~~~ 358 (440)
.=+.|+|..+. .-|-+|.-|. .. +.+++|..++ ..+++||.|.+++-..+..
T Consensus 23 ~iv~G~V~~i~--~~G~~V~~g~---------~~--~~G~l~~~e~~~~~~~~~~~~~~~vGq~v~~~V~~vd~~ 84 (119)
T 1wi5_A 23 MLLTGTVSSLE--DHGYLVDIGV---------DG--TRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGN 84 (119)
T ss_dssp CEEEEEEEEEC--SSEEEEECCC---------SS--CEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTT
T ss_pred CEEEEEEEEEC--CCEEEEEECC---------CC--CCCEECHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECC
T ss_conf 89999999833--9879998067---------54--323012556412344457432325899999999999899
No 147
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=32.51 E-value=17 Score=13.52 Aligned_cols=17 Identities=0% Similarity=0.202 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99987434332332100
Q gi|254780386|r 96 IDLKKVSIKNLRCHIDT 112 (440)
Q Consensus 96 l~~~~~~l~~l~~~l~~ 112 (440)
+...+..+..+..++..
T Consensus 8 ~~~lq~~l~~~~~~l~~ 24 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEK 24 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 148
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein- protein complex, metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=30.48 E-value=18 Score=13.30 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999874343323321
Q gi|254780386|r 96 IDLKKVSIKNLRCHI 110 (440)
Q Consensus 96 l~~~~~~l~~l~~~l 110 (440)
+..+...+..+...+
T Consensus 15 i~~L~~~~~~Le~~~ 29 (125)
T 2pms_C 15 IAELENQVHRLEQEL 29 (125)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999889
No 149
>2jwy_A Uncharacterized lipoprotein YAJI; structural genomics, GFT northeast structural genomics consortium, NESG, membrane, palmitate, PSI-2; NMR {Escherichia coli K12}
Probab=28.23 E-value=20 Score=13.05 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=36.0
Q ss_pred EEEEECHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCC
Q ss_conf 7753262231101589831799981288754439999999713344
Q gi|254780386|r 330 IRAKVTPKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDPIIS 375 (440)
Q Consensus 330 v~~~v~~~di~~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is~~~~ 375 (440)
+...+.-.+|.-..-|..+.+++-........-|.|+|+|=+-+++
T Consensus 62 G~L~~sl~~I~p~anGs~a~L~i~~~~s~plpa~~~~veWG~~dpt 107 (168)
T 2jwy_A 62 GTLRMSLVNITPDADGTTLTLRIQGESNDPLPAFSGTVEYGQIQGT 107 (168)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEESSSSCCCCEEEEEEEEEECSC
T ss_pred EEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCC
T ss_conf 4899999647755896389999836888855660579985355899
No 150
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=27.61 E-value=20 Score=12.98 Aligned_cols=24 Identities=8% Similarity=-0.099 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 633568616899999999999999
Q gi|254780386|r 8 NLKRNHPASLKRMTLLSIIGIIGL 31 (440)
Q Consensus 8 ~~~~~~p~~~~~~~~~~~~~~~~~ 31 (440)
.+..|.|+|+.++.|..|++.+++
T Consensus 49 E~~np~P~ww~~~f~~tiv~~~~Y 72 (311)
T 3mk7_C 49 EYDNPLPRWWFLLFIGTLVFGILY 72 (311)
T ss_dssp BCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 103899789999999999999999
No 151
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=27.15 E-value=21 Score=12.93 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=8.0
Q ss_pred CCCCCCCCEEEEECCE
Q ss_conf 2345554116873121
Q gi|254780386|r 289 QKTILSPIAGTIVYNQ 304 (440)
Q Consensus 289 ~~~I~AP~~G~V~~l~ 304 (440)
-..|.||++|+|..+|
T Consensus 83 v~~i~sPvsG~VvevN 98 (143)
T 3mxu_A 83 ASDVYAPLDGEVVEIN 98 (143)
T ss_dssp EEEEECSSSEEEEEEC
T ss_pred EEEEECCCCEEEEEEC
T ss_conf 8864303546999860
No 152
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=25.70 E-value=5.4 Score=16.84 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 8899987434332332100
Q gi|254780386|r 94 DLIDLKKVSIKNLRCHIDT 112 (440)
Q Consensus 94 ~~l~~~~~~l~~l~~~l~~ 112 (440)
..++.+...+..+...+..
T Consensus 54 ~~i~~L~~~~~~l~~~i~~ 72 (487)
T 2bsg_A 54 RNVEVLDKNIGILKTSLET 72 (487)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 153
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC; 2.10A {Desulfovibrio gigas}
Probab=25.48 E-value=12 Score=14.51 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHEEE
Q ss_conf 1689999999999999998764067
Q gi|254780386|r 15 ASLKRMTLLSIIGIIGLITWSILLP 39 (440)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~w~~~~~ 39 (440)
|.++|+.+++++.|+++.+|++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (560)
T 1z1n_X 6 RAARWVGIPCAILFLTVPFISATAS 30 (560)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7899999999999999998887447
No 154
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=24.67 E-value=23 Score=12.63 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=30.9
Q ss_pred HHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHH
Q ss_conf 22311015898317999812887544399999997133444677765511899999935011
Q gi|254780386|r 336 PKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLA 397 (440)
Q Consensus 336 ~~di~~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~ 397 (440)
..-...|++|+.|.|... . ...-.|+|.+|.+..... +. -|=|+++++.
T Consensus 6 ~~~~~~i~VG~Rv~V~~~---~--~~~r~G~vryvG~~~~~~------g~--wvGVelD~p~ 54 (95)
T 1lpl_A 6 EEAAKNIMVGNRCEVTVG---A--QMARRGEVAYVGATKFKE------GV--WVGVKYDEPV 54 (95)
T ss_dssp HHHHHTCCTTCEEEECCT---T--SCCEEEEEEEEECCSSSS------SC--EEEEEESSSC
T ss_pred HHHCCCCCCCCEEEEECC---C--CCCEEEEEEEEEECCCCC------CC--EEEEEECCCC
T ss_conf 343138967999999579---9--763459999976248988------71--9999931899
No 155
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=24.36 E-value=23 Score=12.59 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=13.9
Q ss_pred HCCCCCCEEEEEEECCCCCCCEEEEEEEEE
Q ss_conf 015898317999812887544399999997
Q gi|254780386|r 341 HVKKGYTATVRFPHYADIREKKFKAIIEKI 370 (440)
Q Consensus 341 ~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~I 370 (440)
.+++|+-|.|+= ++-...+|.+.-++.+.
T Consensus 66 ~~~~G~vv~i~g-~~v~~~~g~~~l~~~~~ 94 (105)
T 3dm3_A 66 DVGRGDYVRVRG-YIREGYYGGLECTANYV 94 (105)
T ss_dssp CCCTTCEEEEEE-EEEECTTSSEEEEEEEE
T ss_pred CCCCCCEEEEEE-EEEECCCCCEEEEECCC
T ss_conf 589999999986-99714589089997996
No 156
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=23.94 E-value=24 Score=12.54 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=7.7
Q ss_pred EEEEEEEEECCCC
Q ss_conf 9999999713344
Q gi|254780386|r 363 FKAIIEKIDPIIS 375 (440)
Q Consensus 363 ~~G~V~~Is~~~~ 375 (440)
+.|+|..+-+...
T Consensus 73 vsG~Vv~vN~~l~ 85 (128)
T 3a7l_A 73 VSGEIVAVNDALS 85 (128)
T ss_dssp SSEEEEEECGGGG
T ss_pred CCCEEEEECHHHH
T ss_conf 5625887525455
No 157
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=23.72 E-value=24 Score=12.51 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=7.1
Q ss_pred EEEEEEEEECCC
Q ss_conf 999999971334
Q gi|254780386|r 363 FKAIIEKIDPII 374 (440)
Q Consensus 363 ~~G~V~~Is~~~ 374 (440)
+.|+|..+-...
T Consensus 72 vsG~Vv~vN~~l 83 (128)
T 1onl_A 72 VAGEIVEVNLAL 83 (128)
T ss_dssp SSEEEEEECTHH
T ss_pred CCCEEEEEHHHH
T ss_conf 772589870555
No 158
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=22.99 E-value=25 Score=12.42 Aligned_cols=10 Identities=0% Similarity=0.325 Sum_probs=5.1
Q ss_pred EEEEEEEEEC
Q ss_conf 9999999713
Q gi|254780386|r 363 FKAIIEKIDP 372 (440)
Q Consensus 363 ~~G~V~~Is~ 372 (440)
+.|+|..+-.
T Consensus 95 vsG~Vv~vN~ 104 (155)
T 3hgb_A 95 ISGKVSEVNS 104 (155)
T ss_dssp SSEEEEEECT
T ss_pred CCCEEEEECH
T ss_conf 3635788525
No 159
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} PDB: 2edg_A
Probab=22.96 E-value=25 Score=12.42 Aligned_cols=16 Identities=6% Similarity=0.306 Sum_probs=9.1
Q ss_pred EEEEEEEEEECCCCCC
Q ss_conf 3999999971334446
Q gi|254780386|r 362 KFKAIIEKIDPIISQQ 377 (440)
Q Consensus 362 ~~~G~V~~Is~~~~~~ 377 (440)
++.|+|..+-+....+
T Consensus 67 PvsG~Vv~~N~~l~~~ 82 (125)
T 3klr_A 67 PLSGEVTEINKALAEN 82 (125)
T ss_dssp SSSEEEEEECGGGTTC
T ss_pred CCCEEEEEEHHHHHHC
T ss_conf 3442566750435429
No 160
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=22.89 E-value=25 Score=12.41 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=8.2
Q ss_pred CCCCCEEECCCEEEEECH
Q ss_conf 578989336978999964
Q gi|254780386|r 72 VENGSQILQGTPLLTFED 89 (440)
Q Consensus 72 VkeGd~VkkGq~L~~ld~ 89 (440)
++.||.|+. .++++|.
T Consensus 60 ~kvGq~v~v--kVl~vd~ 75 (308)
T 1q8k_A 60 IRIGRNECV--KVIRVDK 75 (308)
T ss_dssp CSSSCEEEE--EEEEEET
T ss_pred CCCCCEEEE--EEEEECC
T ss_conf 679999999--9967507
No 161
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=22.84 E-value=25 Score=12.40 Aligned_cols=13 Identities=0% Similarity=0.094 Sum_probs=8.0
Q ss_pred EEEEEEEEEECCC
Q ss_conf 3999999971334
Q gi|254780386|r 362 KFKAIIEKIDPII 374 (440)
Q Consensus 362 ~~~G~V~~Is~~~ 374 (440)
++.|+|..+-...
T Consensus 71 PvsG~vv~vN~~l 83 (131)
T 1hpc_A 71 PISGEVIEVNTGL 83 (131)
T ss_dssp SSCEEEEEECTHH
T ss_pred CCCEEEEEECHHH
T ss_conf 2434999851544
No 162
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=22.70 E-value=25 Score=12.38 Aligned_cols=58 Identities=7% Similarity=0.088 Sum_probs=26.5
Q ss_pred CCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCEEEEEEECC
Q ss_conf 541168731212012221244455421033556504775326223110158983179998128
Q gi|254780386|r 294 SPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYA 356 (440)
Q Consensus 294 AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~i~~~a~~ 356 (440)
.-+.|+|..+. ..|-+|.-+..+--++|-.+ + .-.-...--..+++|+.+.+++..++
T Consensus 33 ~iv~G~V~~I~--~~Gv~V~l~~~i~G~i~~~e-l--s~~~~~~~~~~~~vG~~v~vkVi~id 90 (109)
T 2khj_A 33 AIVTGKVTAVD--AKGATVELADGVEGYLRASE-A--SRDRVEDATLVLSVGDEVEAKFTGVD 90 (109)
T ss_dssp SEEEEEEEEEC--SSCEEEECSTTCBCCBCTTC-C--CSSSSSSGGGSCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEE--CCEEEEEECCCCEEEEEHHH-C--CCCCCCCCCCEECCCCEEEEEEEEEE
T ss_conf 99999999998--97799997999789986899-2--75531260207689999999999998
No 163
>2hd9_A UPF0310 protein PH1033; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii OT3} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=22.06 E-value=26 Score=12.30 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=14.1
Q ss_pred HHHHHCCCCCCEEEEEEEC
Q ss_conf 2311015898317999812
Q gi|254780386|r 337 KQIQHVKKGYTATVRFPHY 355 (440)
Q Consensus 337 ~di~~i~~Gq~v~i~~~a~ 355 (440)
.-+.+|++|+.+-+.+...
T Consensus 30 ~~l~rikpGD~li~Y~~~~ 48 (145)
T 2hd9_A 30 NTLSRVKPGDKLVIYVRQE 48 (145)
T ss_dssp HHHTTCCTTCEEEEEECCE
T ss_pred CHHHHCCCCCEEEEEECCC
T ss_conf 2775378998899996651
No 164
>1r5b_A Eukaryotic peptide chain release factor GTP- binding subunit; translation termination, peptide release, GTPase; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=21.23 E-value=27 Score=12.19 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=34.5
Q ss_pred EEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEE--ECHHHHHHCCCCCCEEEEEEEC
Q ss_conf 1687312120122212444554210335565047753--2622311015898317999812
Q gi|254780386|r 297 AGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAK--VTPKQIQHVKKGYTATVRFPHY 355 (440)
Q Consensus 297 ~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~--v~~~di~~i~~Gq~v~i~~~a~ 355 (440)
.|+|..-.+ ..+.+..|+.+. |.|.+....|..- .....+.....|+.|.+.+...
T Consensus 285 ~GtVvtG~V--~sG~i~~Gd~v~-i~p~~~~~~VksI~~~~~~~v~~a~aG~~v~l~l~~~ 342 (467)
T 1r5b_A 285 LGTILEGKI--EAGSIKKNSNVL-VMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGD 342 (467)
T ss_dssp SSEEEEEEC--CBSEEETTEEEE-EETTTEEEEEEEEECTTCCEESEEETTCEEEEEEESC
T ss_pred CCCEEEEEE--EEEEEECCCEEE-EECCCCEEEEEEEEECCCCEEEECCCCCEEEEEEECC
T ss_conf 872689999--311680599999-9559987999999743783742717998699998242
No 165
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=20.76 E-value=27 Score=12.13 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCCCCCCEEEE-EEECHHHHHHCCCCCCEEEEE
Q ss_conf 24445542103355650477-532622311015898317999
Q gi|254780386|r 312 AQQSQPLMKIVPHSKLTYIR-AKVTPKQIQHVKKGYTATVRF 352 (440)
Q Consensus 312 v~~G~~l~~Ivp~~~~l~v~-~~v~~~di~~i~~Gq~v~i~~ 352 (440)
+..|+.+. +.|.+....|. ..+...++.....|+.|.+.+
T Consensus 219 lk~Gd~v~-i~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~L 259 (370)
T 2elf_A 219 SKDKDKTK-IFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRL 259 (370)
T ss_dssp EETTCEEE-EETTTEEEEEEEEEETTEEESEEETTCEEEEEE
T ss_pred CCCCCEEE-EECCCCEEEEEEEEECCCEECCCCCCCEEEEEE
T ss_conf 42898999-937997899989999982747728998899997
No 166
>2j01_T 50S ribosomal protein L19; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.6 PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=20.18 E-value=28 Score=12.05 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=22.5
Q ss_pred HHHHHHCCCCCCEEEEEEECC--CCCCCEEEEEEEEEE
Q ss_conf 223110158983179998128--875443999999971
Q gi|254780386|r 336 PKQIQHVKKGYTATVRFPHYA--DIREKKFKAIIEKID 371 (440)
Q Consensus 336 ~~di~~i~~Gq~v~i~~~a~~--~~~~~~~~G~V~~Is 371 (440)
-.|++.+++|+.|.|++.-.. ..+.-.|.|.|..+.
T Consensus 16 k~~~P~f~~GDtV~V~~~i~eg~k~Riq~F~GvvI~~~ 53 (146)
T 2j01_T 16 RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIR 53 (146)
T ss_dssp CSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEEEE
T ss_conf 15799708988999999970588631456668899873
No 167
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus HB27} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 2etn_A
Probab=20.07 E-value=23 Score=12.58 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 221222332212222212345554116
Q gi|254780386|r 272 TFADEMSKLTILEKTREQKTILSPIAG 298 (440)
Q Consensus 272 ~l~~~~~~l~~l~~~l~~~~I~AP~~G 298 (440)
+...+..++..++..|.++.|.-|.++
T Consensus 54 ~q~~~e~rI~~Le~~L~~A~iie~~~~ 80 (156)
T 2f23_A 54 EKARIEARIDSLEDILSRAVILEEGSG 80 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHEEECCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999999999986130567876
Done!