HHSEARCH alignment of GI: 254780386 and SCOP domain: d2ix0a1

Alignment

Probab=94.22  E-value=0.022  Score=31.16  Aligned_cols=55  Identities=16%  Similarity=0.105  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCEEEEEEECHHHH--HHCCCCCCEEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf             54210335565047753262231--10158983179998128875443999999971
Q gi|254780386|r  317 PLMKIVPHSKLTYIRAKVTPKQI--QHVKKGYTATVRFPHYADIREKKFKAIIEKID  371 (440)
Q Consensus       317 ~l~~Ivp~~~~l~v~~~v~~~di--~~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is  371 (440)
                      ..+.++|++..+.-..+|+....  ...+.||.|.+.+..||......+.|+|+.|=
T Consensus        13 ~~~fVvPd~~ri~~~I~I~~~~~~~~~ak~Gd~Vvvei~~~P~~~~~~~~g~I~evl   69 (90)
T d2ix0a1          13 DRLAIVPDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYI   69 (90)
T ss_dssp             SSEEEEESCTTCCSCEEEEECTTCCCCCCTTCEEEEEEEECGGGTCSSCEEEEEEEC
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEE
T ss_conf             989998599853664412643244556789979999997688778998658998987

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Exoribonuclease 2, RNB
species: Escherichia coli [TaxId: 562]