RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780386|ref|YP_003064799.1| Type I secretion membrane
fusion protein, HlyD [Candidatus Liberibacter asiaticus str. psy62]
(440 letters)
>gnl|CDD|31754 COG1566, EmrA, Multidrug resistance efflux pump [Defense
mechanisms].
Length = 352
Score = 50.7 bits (121), Expect = 8e-07
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 17/190 (8%)
Query: 188 LRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINEL 247
LRA L+S Q + + A QN+L ++ + + + E + +
Sbjct: 110 LRAQLASAQALIAQAEAQDLDQA--QNELERRAELAQRGVVSREELDRARAALQAA---- 163
Query: 248 YDEANLEFANYLKEISRDLEQNQRTFADEM--SKLTILEKTR---EQKTILSPIAGTIVY 302
EA L A ++ + L +++ + A S L++ + E+ I +P+ G +
Sbjct: 164 --EAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAPVDGYVT- 220
Query: 303 NQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIREKK 362
N S Y PLM +VP Y+ A Q+ V+ G A + A
Sbjct: 221 NLSVRVGQYVSAGTPLMALVPLDSF-YVVANFKETQLARVRPGQPAEITL--DAYPGNGV 277
Query: 363 FKAIIEKIDP 372
+ I+E I P
Sbjct: 278 VEGIVEGIAP 287
Score = 34.2 bits (78), Expect = 0.082
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLI-DLKKVSIKNLR 107
I++P G + V G + GTPL+ +++ ++ + K+ + +R
Sbjct: 210 VIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLDSFYVVANFKETQLARVR 260
Score = 31.5 bits (71), Expect = 0.52
Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 13/133 (9%)
Query: 13 HPASLKR----MTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIKSPFSGIIK 68
A KR +TLL ++ + + + S+ + +VV I SG +
Sbjct: 8 AKAKRKRFKLPLTLLVVLAAVLYGGL--IWLYYRNHPSTDDAYVRADVVPIAPQVSGRVT 65
Query: 69 KFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLE 128
+ V++ + +G L + + + +++ + ++ L L + +
Sbjct: 66 EVNVKDNQLVKKGDVLFRIDPRDY-------RAALEQAEAALAAAEAQLRNLRAQLASAQ 118
Query: 129 KAFESREEQLLDF 141
E Q LD
Sbjct: 119 ALIAQAEAQDLDQ 131
>gnl|CDD|109580 pfam00529, HlyD, HlyD family secretion protein.
Length = 304
Score = 42.5 bits (100), Expect = 3e-04
Identities = 47/304 (15%), Positives = 86/304 (28%), Gaps = 77/304 (25%)
Query: 55 NVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEK 114
V E++ SGI+ + V+ G ++ G L+ + +D + + +
Sbjct: 1 RVAEVQPQVSGIVIRILVKEGDRVKAGDVLVRLDPTPYQAALDRAEAELAAAQ-----AD 55
Query: 115 SALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMR-S 173
+ + D L+ Q +L+ L R +
Sbjct: 56 AQARLARAERDRLQALVAQAAIQSEQEADAAR---------------AALREALAASRGA 100
Query: 174 IYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTL-ELRE 232
+L+ R L S L +S + ++TL L
Sbjct: 101 ASKAQLE------AARDNLRSALALLP----------ISLGRIGAS-----QATLGALLN 139
Query: 233 NIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQKTI 292
N+ Q L L E L Q I
Sbjct: 140 NLQAQG--------------LAARAQLDEAYLQLAQTAAELLR---------------LI 170
Query: 293 LSPIAGTIVYNQSFSSS----NYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTA 348
+P G V +++ S PLM +VP + + + A + Q++ V+ G A
Sbjct: 171 RAPAQGERVQSEAQLRSVQVGEEVGVGSPLMGVVPFNDV-EVDANLGETQLRLVRPGPRA 229
Query: 349 TVRF 352
+
Sbjct: 230 PLTG 233
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase,
geranyl-CoA carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing
carboxylation, decarboxylation, or transcarboxylation.
During this process, biotin is covalently attached to a
specific lysine.
Length = 67
Score = 37.0 bits (87), Expect = 0.010
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTF 87
E+ +P +G++K+ V+ G Q+ G L+
Sbjct: 38 EVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67
Score = 30.8 bits (71), Expect = 0.79
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
E+ +P G + K V+ G ++ G PL E
Sbjct: 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLE 31
>gnl|CDD|30854 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 34.2 bits (78), Expect = 0.075
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETT 93
E+ + +E+ +P +G++ K VE G + G + E+
Sbjct: 38 EVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGAD 82
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases. 2-oxo acid dehydrogenase multienzyme
complexes, like pyruvate dehydrogenase (PDH),
2-oxoglutarate dehydrogenase (OGDH) and branched-chain
2-oxo acid dehydrogenase (BCDH), contain at least three
different enzymes, 2-oxo acid dehydrogenase (E1),
dihydrolipoyl acyltransferase (E2) and dihydrolipoamide
dehydrogenase (E3) and play a key role in redox
regulation. E2, the central component of the complex,
catalyzes the transfer of the acyl group of CoA from E1
to E3 via reductive acetylation of a lipoyl group
covalently attached to a lysine residue.
Length = 74
Score = 33.9 bits (79), Expect = 0.086
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTF 87
VE+++P +G++ K VE G + G +
Sbjct: 43 TVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74
>gnl|CDD|144088 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family
covers two Prosite entries, the conserved lysine
residue binds biotin in one group and lipoic acid in
the other. Note that the model may not recognize the
Glycine cleavage system H proteins.
Length = 73
Score = 33.7 bits (78), Expect = 0.11
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTF 87
+EI +P +G++K+ V+ G + G PL
Sbjct: 42 EMEIPAPVAGVVKEILVKEGDTVEVGDPLAKI 73
>gnl|CDD|34842 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 33.5 bits (76), Expect = 0.12
Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 336 PKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITD 395
+ ++ + + P + I + +AI EKID ++ Q++++ Q+ Y+ L+
Sbjct: 1706 TRSLRAIFGYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAI- 1764
Query: 396 LAFSDNNIELRNGFPAEVLFT 416
+ + AE+ F+
Sbjct: 1765 -----REMIAGHIGEAEITFS 1780
>gnl|CDD|34383 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 33.3 bits (76), Expect = 0.15
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 59 IKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
+++P G++ K V G Q+ GT L+ FE+
Sbjct: 615 LRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645
>gnl|CDD|30857 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 33.1 bits (75), Expect = 0.15
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
EI++P G++K+ V+NG + G PL E
Sbjct: 109 EIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139
>gnl|CDD|35779 KOG0559, KOG0559, KOG0559, Dihydrolipoamide succinyltransferase
(2-oxoglutarate dehydrogenase, E2 subunit) [Energy
production and conversion].
Length = 457
Score = 32.7 bits (74), Expect = 0.24
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 48 GEILNEDNVV----------EIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
G+ +NED V E+ SP SG+I + V++G + G L
Sbjct: 97 GDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKIS 147
>gnl|CDD|164623 MTH00052, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 262
Score = 30.5 bits (69), Expect = 0.99
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 348 ATVRFPHYADIREKKFKAIIE-KIDPIISQQDNNLQTQEYYEVILKITD 395
ATV + H+ I K+ +AII + + LQ EYYE I+D
Sbjct: 143 ATVTWAHHGIISGKRKEAIIGLALTVALGLLFTGLQAMEYYEAPFTISD 191
>gnl|CDD|36212 KOG0994, KOG0994, KOG0994, Extracellular matrix glycoprotein Laminin
subunit beta [Extracellular structures].
Length = 1758
Score = 29.7 bits (66), Expect = 1.5
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 207 EKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLR-HINELYDEANLEFANYLKEISRD 265
+ + Q +R++ K + E+ LR +L +AN E + LK++ +
Sbjct: 1661 QGLEILQKYYELVDRLLEKRMEG-SQAARERAEQLRTEAEKLLGQAN-EKLDRLKDLELE 1718
Query: 266 LEQNQRTFADEMSKLTILEKTREQKTILSPIAG-TIVYNQ 304
+N++ D+ ++L LEK E +L I + Y
Sbjct: 1719 YLRNEQALEDKAAELAGLEKRVES--VLDHINERVLYYAT 1756
>gnl|CDD|30431 COG0082, AroC, Chorismate synthase [Amino acid transport and
metabolism].
Length = 369
Score = 29.4 bits (66), Expect = 2.0
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 251 ANLEFANYLKEISRDLEQNQ------RTFADEMSKLTILEKTREQKTILSPIAGTIVYNQ 304
A LE + ++I ++L++ + T E ++ IL E KT +PIA ++ N
Sbjct: 31 AGLELS--EEDIQKELDRRRPGYSRGTTMRKEKDEVEILSGVFEGKTTGTPIA-LLIENT 87
Query: 305 SFSSSNYAQQSQPLMKIVP---HSKLTY 329
S +Y+ +K P H+ TY
Sbjct: 88 DQRSKDYSM-----IKDPPRPGHADYTY 110
>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
ATPase/SMC superfamily [Replication, recombination and
repair].
Length = 1294
Score = 29.1 bits (65), Expect = 2.6
Identities = 36/283 (12%), Positives = 95/283 (33%), Gaps = 20/283 (7%)
Query: 101 VSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSV 160
++ LR ++ +LD L + + L+K +E ++ + + + I
Sbjct: 819 RTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQK--IERS 876
Query: 161 YRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQE 220
L+ + + L++K L + + +L ++ E+ +N+ N E
Sbjct: 877 LARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEE---LKNERNTSE 933
Query: 221 RIVYKSTLELRENIHEQKNMLRHINELYDEANLEFAN--------YLKEISRDLEQNQRT 272
++ K ++ E + + + + +L+E ++ + ++
Sbjct: 934 KLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQK 993
Query: 273 FADEMSK-------LTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHS 325
++ + LT+ R+ K + ++ + ++ L +
Sbjct: 994 IRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKL 1053
Query: 326 KLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIREKKFKAIIE 368
KQ + K +R + D + KA+IE
Sbjct: 1054 SSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIE 1096
>gnl|CDD|36217 KOG0999, KOG0999, KOG0999, Microtubule-associated protein
Bicaudal-D [Intracellular trafficking, secretion, and
vesicular transport].
Length = 772
Score = 28.9 bits (64), Expect = 3.0
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 8/176 (4%)
Query: 113 EKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMR 172
EK L + + + +Q + LG+Y S KV G L+ +
Sbjct: 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEE 103
Query: 173 SIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRE 232
L+LEN+ LR L++ Q++ ++ + S + Q R + EL+E
Sbjct: 104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR---RLRDELKE 160
Query: 233 NIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTRE 288
+ +L +EL +E N+ L++ +L Q+Q + ++ LE+ E
Sbjct: 161 YKFREARLLSEYSEL-EEENIS----LQKQVSNLRQSQVEYEGLKHEIKRLEEETE 211
>gnl|CDD|58071 cd03705, EF1_alpha_III, Domain III of EF-1. Eukaryotic elongation
factor 1 (EF-1) is responsible for the GTP-dependent
binding of aminoacyl-tRNAs to ribosomes. EF-1 is
composed of four subunits: the alpha chain, which binds
GTP and aminoacyl-tRNAs, the gamma chain that probably
plays a role in anchoring the complex to other cellular
components and the beta and delta (or beta') chains.
This family is the alpha subunit, and represents the
counterpart of bacterial EF-Tu for the archaea (aEF-1
alpha) and eukaryotes (eEF-1 alpha)..
Length = 104
Score = 28.6 bits (64), Expect = 3.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 336 PKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDP----IISQQDNNLQTQEYYEVIL 391
P QI K GYT V H A + +F I+ KIDP + + L++ + V +
Sbjct: 16 PGQI---KPGYTP-VLDCHTAHV-ACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKI 70
Query: 392 K 392
Sbjct: 71 V 71
>gnl|CDD|35778 KOG0558, KOG0558, KOG0558, Dihydrolipoamide transacylase
(alpha-keto acid dehydrogenase E2 subunit) [Energy
production and conversion].
Length = 474
Score = 28.5 bits (63), Expect = 3.9
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLID 97
E+ ++ V I S + G +KK G PL+ D+E D D
Sbjct: 100 EVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLV---DLEVEDSQD 145
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 28.2 bits (64), Expect = 4.0
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 168 LTRMRSIYLN-RLDLENKSSL 187
TRMR + RLD +K +
Sbjct: 178 FTRMRFCTPDGRLDFSSKGAP 198
>gnl|CDD|28921 cd00040, CSF2, Granulocyte Macrophage Colony Stimulating Factor
(GM-CSF) is a member of the large family of polypeptide
growth factors called cytokines. It stimulates a wide
variety of hematopoietic and nonhematopoietic cell types
via binding to members of the cytokine receptor family,
mainly the GM-CSF receptor..
Length = 121
Score = 28.0 bits (62), Expect = 5.8
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 109 HIDTEKSALDFLNNKYD----------VLEKAFESREEQLLDFLGKYHSTCSKVFNYGIS 158
H+D K AL LNN D V+ + F+ +E L T K++ G+
Sbjct: 15 HVDAIKEALSLLNNSNDTAAVMNETVEVVSEMFDPQEPTCL-------QTRLKLYKQGLR 67
Query: 159 SVYRSLKMKLTRMRSIY 175
LK LT M S Y
Sbjct: 68 GSLTKLKGPLTMMASHY 84
>gnl|CDD|34333 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 27.7 bits (61), Expect = 6.2
Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 18/194 (9%)
Query: 106 LRCHIDTEKSALDFLNNKYDVLEKAFESRE----------EQLLDFLGKYHSTCSKVFNY 155
+R H + ALD L Y+ LE F + E E+ LD LG S
Sbjct: 555 IRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELG-LSRELSPEQQL 613
Query: 156 GISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQND 215
I S + LK + + +L ++ + LR ++ ++ + + + E + +
Sbjct: 614 DILSTMKDLKKLMQ-------KKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLST 666
Query: 216 LNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFAD 275
L +R+ + L+ E + + EL DE E + KEI + D
Sbjct: 667 LFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTED 726
Query: 276 EMSKLTILEKTREQ 289
+ E+ Q
Sbjct: 727 AFREAAREEQQLTQ 740
>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
[Cytoskeleton].
Length = 1930
Score = 27.5 bits (61), Expect = 6.9
Identities = 36/201 (17%), Positives = 78/201 (38%), Gaps = 21/201 (10%)
Query: 103 IKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHS---TCSKVFNYGISS 159
+KNL I++ + L+ + LE+ ++ L K S +K +
Sbjct: 966 LKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAK-----LEQ 1020
Query: 160 VYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQ----ND 215
L++ L R + I R++LE L L Q+ + +K E+ ++
Sbjct: 1021 QLDDLEVTLEREKRI---RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESE 1077
Query: 216 LNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFA------NYLKEISRDLEQN 269
L+Q + + E+ + + K + I EL +E E A +++S +LE+
Sbjct: 1078 LSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEEL 1137
Query: 270 QRTFADEMSKLTILEKTREQK 290
+ ++ + +++
Sbjct: 1138 KEELEEQGGTTAAQLELNKKR 1158
>gnl|CDD|164597 MTH00024, COX3, cytochrome c oxidase subunit III; Validated.
Length = 261
Score = 27.4 bits (61), Expect = 7.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 348 ATVRFPHYADIREKKFKAIIE-KIDPIISQQDNNLQTQEYYEVILKITD 395
ATV + H+A I K+ +AI+ + + LQ EYYE I+D
Sbjct: 142 ATVTWAHHAIISGKRKEAILGLFLTVFLGVLFTGLQAIEYYEAPFAISD 190
>gnl|CDD|35589 KOG0368, KOG0368, KOG0368, Acetyl-CoA carboxylase [Lipid transport
and metabolism].
Length = 2196
Score = 27.6 bits (61), Expect = 7.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 52 NEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
E++ ++SP G + ++ VE+G + G P E
Sbjct: 681 KENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are
present in biotin-dependent
carboxylases/decarboxylases, the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases, and the H-protein of the glycine
cleavage system (GCS). These domains transport CO2,
acyl, or methylamine, respectively, between components
of the complex/protein via a biotinyl or lipoyl group,
which is covalently attached to a highly conserved
lysine residue.
Length = 73
Score = 27.4 bits (61), Expect = 8.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTF 87
++++P SG +KK V+ G+++ TPL+
Sbjct: 42 TSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.133 0.368
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,049,850
Number of extensions: 263261
Number of successful extensions: 850
Number of sequences better than 10.0: 1
Number of HSP's gapped: 846
Number of HSP's successfully gapped: 62
Length of query: 440
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 343
Effective length of database: 4,167,664
Effective search space: 1429508752
Effective search space used: 1429508752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)