RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780386|ref|YP_003064799.1| Type I secretion membrane
fusion protein, HlyD [Candidatus Liberibacter asiaticus str. psy62]
(440 letters)
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins.
Length = 423
Score = 112 bits (282), Expect = 2e-25
Identities = 79/432 (18%), Positives = 169/432 (39%), Gaps = 29/432 (6%)
Query: 14 PASLKRMTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVE 73
+ +T L ++ W+ P+++ +++G+++ NV ++ GI+++ V
Sbjct: 1 SRFARLITWLIAGLVVIFFLWAYFAPLDVVATATGKVVPSGNVKVVQHLEGGIVREILVR 60
Query: 74 NGSQILQGTPLLTFEDIET---TDLIDLKKVSIKNLRCHIDTEKSALDF-------LNNK 123
G ++ G L+ + + ++ + + ++ + E + L+ +
Sbjct: 61 EGDRVKAGQVLVELDATDVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAE 120
Query: 124 YDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLDLEN 183
+ + + ++ + I + + L+ +L +++ L+
Sbjct: 121 DPAVPELIKGQQSLFESRKSTLRAQL-----ELILAQIKQLEAELAGLQA------QLQA 169
Query: 184 KSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRH 243
L + ++L + L EK VS+ +L + ER ++ EL E + + R
Sbjct: 170 LRQQLEVI----SEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQ 225
Query: 244 INELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTIVYN 303
I+EL E + +E+ +L + Q A+ +L ++ I SP+ GT+
Sbjct: 226 IDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTVQSL 285
Query: 304 QSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIREKKF 363
+ + Q + LM+IVP I AK++PK I V G A ++F + R
Sbjct: 286 KVHTVGGVVQPGETLMEIVPEDDPLEIEAKLSPKDIGFVHVGQPAEIKFSAFPYRRYGIL 345
Query: 364 KAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDN--NIELRNGFPAEVLFTAKNTT 421
++ I P + YY V + I +EL G P T
Sbjct: 346 NGKVKSISPDTFTDERGGGP--YYRVRISIDQNTLGIGPKGLELSPGMPVTADIKTGERT 403
Query: 422 LAQEIIHPITDN 433
+ + ++ PITD+
Sbjct: 404 VIEYLLKPITDS 415
>gnl|CDD|162505 TIGR01730, RND_mfp, RND family efflux transporter, MFP subunit.
This model represents the MFP (membrane fusion protein)
component of the RND family of transporters. RND refers
to Resistance, Nodulation, and cell Division. It is, in
part, a subfamily of pfam00529 (Pfam release 7.5) but
hits substantial numbers of proteins missed by that
model. The related HlyD secretion protein, for which
pfam00529 is named, is outside the scope of this model.
Attributed functions imply outward transport. These
functions include nodulation, acriflavin resistance,
heavy metal efflux, and multidrug resistance proteins.
Most members of this family are found in Gram-negative
bacteria. The proposed function of MFP proteins is to
bring the inner and outer membranes together and enable
transport to the outside of the outer membrane. Note,
however, that a few members of this family are found in
Gram-positive bacteria, where there is no outer
membrane.
Length = 322
Score = 44.6 bits (106), Expect = 5e-05
Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 213 QNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISR-DLEQNQR 271
Q L Q ++ LEL + E+ L + A+ + ++ +E Q
Sbjct: 67 QAALAQLAAA--EAQLELAQRSFER------AERLVKRNAVSQADL--DDAKAAVEAAQA 116
Query: 272 TFADEMSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIR 331
+ L + I +P GTI + Y Q L IV L
Sbjct: 117 DLEAAKASLASAQLNLRYTEIRAPFDGTIG-RRLVEVGAYVTAGQTLATIVDLDPL-EAD 174
Query: 332 AKVTPKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDPII 374
V + + +++G T TV ++FK + IDP +
Sbjct: 175 FSVPERDLPQLRRGQTLTVELDALPG---EEFKGKLRFIDPRV 214
Score = 35.0 bits (81), Expect = 0.040
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTD 94
EI++PF G I + VE G+ + G L T D++ +
Sbjct: 136 EIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLDPLE 172
Score = 30.7 bits (70), Expect = 0.73
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 22/100 (22%)
Query: 39 PIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDL 98
+ +++ G L + ++ + +G I K V G ++ +G L +D
Sbjct: 10 TLANTLTFPGS-LEAVDEADLAAEVAGKITKISVREGQKVKKGQVLARLDD--------- 59
Query: 99 KKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQL 138
D + AL + E E +
Sbjct: 60 ------------DDYQLALQAALAQLAAAEAQLELAQRSF 87
>gnl|CDD|163506 TIGR03794, NHPM_micro_HlyD, NHPM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a propeptide region
related to nitrile hydratase. We designate the class of
bacteriocin as Nitrile Hydratase Propeptide Microcin, or
NHPM. This family, therefore, is designated as NHPM
bacteriocin system secretion protein. Some but not all
NHPM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters.
Length = 421
Score = 42.9 bits (101), Expect = 2e-04
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 22 LLSIIGII-GLITWSILLPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQ 80
L ++ I+ + W I I I VS +G ++ V I+SP SG++ VE G Q+ +
Sbjct: 23 LAALGVIVVAALAWGIFGSIPIRVSGNGILILSSGVDTIQSPGSGVVIDLDVEVGDQVKK 82
Query: 81 GTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLD 140
G + E + + + L+ + + ++ + E+ F+ +E L +
Sbjct: 83 GQVVARLFQPELRERLQESYQKLTQLQ---EQLEEVRNYTGRLKEGRERHFQKSKEALEE 139
Query: 141 FLGK 144
+G+
Sbjct: 140 TIGR 143
>gnl|CDD|132016 TIGR02971, heterocyst_DevB, ABC exporter membrane fusion protein,
DevB family. Members of this protein family are found
mostly in the Cyanobacteria, but also in the
Planctomycetes. DevB from Anabaena sp. strain PCC 7120
is partially characterized as a membrane fusion protein
of the DevBCA ABC exporter, probably a glycolipid
exporter, required for heterocyst formation. Most
Cyanobacteria have one member only, but Nostoc sp. PCC
7120 has seven members.
Length = 327
Score = 40.2 bits (94), Expect = 0.001
Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 36/210 (17%)
Query: 176 LNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELREN-- 233
LNRL+ E L + Q+++ ++LF AVS +DL+ + + + EL E
Sbjct: 106 LNRLEAE---------LETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALA 156
Query: 234 -----IHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTRE 288
I + L + E E +++ A E+ LE Q+ A+ + +LT ++
Sbjct: 157 SRSEQIDGARAALASLAEEVRETDVDLAQ--AEVKSALEAVQQ--AEALLELTYVK---- 208
Query: 289 QKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTA 348
+PI G ++ + + S+ ++++ S++ Y A+V I V+ G A
Sbjct: 209 -----APIDGRVL--KIHAREGEVIGSEGILEMGDTSQM-YAVAEVYETDINRVRVGQRA 260
Query: 349 TVRFPHYADIREKKFKAIIEKIDPIISQQD 378
T+ + + + +I +I++ D
Sbjct: 261 TITSTALS----GPLRGTVRRIGSLIAKND 286
>gnl|CDD|183339 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 36.7 bits (86), Expect = 0.011
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
VEI SP +G + K VE G + G+ + E+
Sbjct: 45 TVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEE 78
>gnl|CDD|183338 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 35.2 bits (82), Expect = 0.033
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 40 IEISVSSSGEILNEDN----------VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
IE V G+ + ED +EI SP +G++K+ +V+ G ++ G+ L+ E
Sbjct: 136 IEWLVKV-GDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEV 194
Score = 35.2 bits (82), Expect = 0.035
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
+EI SP +G++K+ +V+ G + G L E
Sbjct: 44 TMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEA 77
>gnl|CDD|117187 pfam08614, ATG16, Autophagy protein 16 (ATG16). Autophagy is a
ubiquitous intracellular degradation system for
eukaryotic cells. During autophagy, cytoplasmic
components are enclosed in autophagosomes and delivered
to lysosomes/vacuoles. ATG16 (also known as Apg16) has
been shown to be bind to Apg5 and is required for the
function of the Apg12p-Apg5p conjugate in the yeast
autophagy pathway.
Length = 194
Score = 34.8 bits (80), Expect = 0.046
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 188 LRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINEL 247
+ L+ +++LT + + A LN + + E+++ + I L
Sbjct: 72 MEQKLAKLREELTELHKKRGELAQRLLLLNDELE---QLRREIQQLEKTIAELRSEITSL 128
Query: 248 YDEANLEFANYLKEISRDLEQNQRTFADEMSKLTI 282
E L+E ++ E++ T DE+ L I
Sbjct: 129 ETEIRD-----LREELQEKEKDNETLQDELISLNI 158
>gnl|CDD|185477 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 34.3 bits (79), Expect = 0.068
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 48 GEILNEDNV----------VEIKSPFSGIIKKFQVENGSQILQGTPLLT 86
G+ + ED V V+I++P SG+I K E G + G PL
Sbjct: 69 GDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSE 117
>gnl|CDD|162310 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model.
Length = 546
Score = 32.9 bits (75), Expect = 0.15
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETT 93
+E+ +P SG++K +V+ G + G +LT +T
Sbjct: 158 SMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGST 195
Score = 29.8 bits (67), Expect = 1.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
+E+ S +GIIK+ +V+ G + G + T E
Sbjct: 42 SMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE 74
>gnl|CDD|162152 TIGR00998, 8a0101, efflux pump membrane protein (multidrug
resistance protein A).
Length = 334
Score = 33.2 bits (76), Expect = 0.15
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLI-DLKKVSIKNLR 107
I++PF G + + V+ G + G PL+ E + + K+ +KN+R
Sbjct: 206 VIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQMYVEANFKETQLKNVR 256
>gnl|CDD|183337 PRK11854, aceF, pyruvate dehydrogenase
dihydrolipoyltransacetylase; Validated.
Length = 633
Score = 33.1 bits (76), Expect = 0.16
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
E+ SP +G++K+ +V+ G ++ G ++ FE
Sbjct: 45 EVPSPQAGVVKEIKVKVGDKVETGALIMIFES 76
Score = 29.6 bits (67), Expect = 1.5
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
E+ +PF+G +K+ +V G ++ G+ ++ FE
Sbjct: 148 EVPAPFAGTVKEIKVNVGDKVSTGSLIMVFEV 179
Score = 29.6 bits (67), Expect = 1.7
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
E+ +PF+G +K+ +V G ++ G+ ++ FE
Sbjct: 249 EVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEV 280
>gnl|CDD|162058 TIGR00834, ae, anion exchange protein. They preferentially
catalyze anion exchange (antiport) reactions, typically
acting as HCO3-:Cl- antiporters, but also transporting a
range of other inorganic and organic anions.
Additionally, renal Na+:HCO3- cotransporters have been
found to be members of the AE family. They catalyze the
reabsorption of HCO3- in the renal proximal tubule.
Length = 900
Score = 30.5 bits (69), Expect = 0.96
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 174 IYLNRLDLENKSSLLRALL--SSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELR 231
IY ++ E++ +LRALL SHQ D K A SQ+ + +
Sbjct: 83 IYSGQIRPEDRDEVLRALLLKHSHQSDAK--KLGGLSRARSQSSIGKT----LSHDASEM 136
Query: 232 ENIHEQKNMLRHINEL 247
N +L H
Sbjct: 137 PNPDNGAPLLPHQPLT 152
>gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase. Members of this family are
ATP-dependent urea carboxylase, including characterized
members from Oleomonas sagaranensis (alpha class
Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the yeast
enzyme is not included in this model and is represented
by an adjacent gene in Oleomonas sagaranensis. The fusion
of urea carboxylase and allophanate hydrolase is
designated urea amidolyase. The enzyme from Oleomonas
sagaranensis was shown to be highly active on acetamide
and formamide as well as urea.
Length = 1201
Score = 29.6 bits (67), Expect = 1.6
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
+ +P +G + K + G + G + E
Sbjct: 1171 PVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201
>gnl|CDD|181754 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 29.4 bits (67), Expect = 1.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
EI++P G +K+ V+ G ++ G L+ E
Sbjct: 561 EIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591
>gnl|CDD|185090 PRK15136, PRK15136, multidrug efflux system protein EmrA;
Provisional.
Length = 390
Score = 29.3 bits (66), Expect = 1.9
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 289 QKT-ILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYT 347
Q+T I+SP+ G V +S + PLM +VP + L ++ A Q+ +++ G
Sbjct: 214 QRTKIVSPMTG-YVSRRSVQVGAQISPTTPLMAVVPATNL-WVDANFKETQLANMRIGQP 271
Query: 348 ATVRFPHYAD 357
AT+ Y D
Sbjct: 272 ATITSDIYGD 281
Score = 28.5 bits (64), Expect = 3.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLL 85
+I SP +G + + V+ G+QI TPL+
Sbjct: 217 KIVSPMTGYVSRRSVQVGAQISPTTPLM 244
>gnl|CDD|168146 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 29.4 bits (66), Expect = 2.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLL 85
EI +P G++KK V+ G + G PL+
Sbjct: 123 EIPAPKDGVVKKILVKEGDTVDTGQPLI 150
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis.
Length = 1143
Score = 29.0 bits (65), Expect = 2.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 59 IKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
I++P G IK+ V+ G QI LL E
Sbjct: 1114 IQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143
>gnl|CDD|178910 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 28.2 bits (64), Expect = 4.8
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 168 LTRMRSIYLN-RLDLENKSSL 187
TRMR + RLD + K
Sbjct: 180 FTRMRFCTPDGRLDFKCKGPP 200
>gnl|CDD|178052 PLN02433, PLN02433, uroporphyrinogen decarboxylase.
Length = 345
Score = 28.0 bits (63), Expect = 5.2
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIET-TDLIDLKKV----- 101
G IL D I +P + F + G + P+ + ED++ L +K+
Sbjct: 63 GVILFSD----ILTPLPAMGIPFDIVKGKGPVIPNPIRSEEDVKRLHPLDPEEKLPFVGE 118
Query: 102 SIKNLRCHIDTEKSALDF 119
++K LR + E + L F
Sbjct: 119 ALKILRKEVGNEAAVLGF 136
>gnl|CDD|162153 TIGR00999, 8a0102, Membrane Fusion Protein cluster 2 (function with
RND porters).
Length = 265
Score = 27.8 bits (62), Expect = 5.7
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 55 NVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIET 92
+ VE++SPF G I + V G + L D+
Sbjct: 87 SYVEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLGA 124
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 27.7 bits (61), Expect = 6.4
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 202 MKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRH---INELYDEANLEFANY 258
M L + +++ N +ER ++ +ELR+ I EQ+ +L I + EA + +
Sbjct: 259 MSELLQSEFINEPRENLEER---EAAMELRDRIEEQELLLEFLFLIQQRKQEAADKLQDT 315
Query: 259 LKEISRDLEQ 268
+ +S D++Q
Sbjct: 316 ISLLSSDIDQ 325
>gnl|CDD|133910 PHA00540, PHA00540, hypothetical protein.
Length = 715
Score = 27.7 bits (61), Expect = 6.7
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 151 KVFNYGISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNA 210
+VFN+ S+Y SL K + + + DL S L++ +S + ++ F +N
Sbjct: 371 EVFNFN-GSIYSSLNSKDLKYYQQFSGQFDL---SKFLQSFFASALVPVFQNRSSFIENG 426
Query: 211 VSQNDLNQQERIVYKSTLELR--------ENIHEQKNMLRHINELYDEANLEFANYLKEI 262
N L +V L+L+ ENI+++ + +N ++ + + NYL+ I
Sbjct: 427 YIDN-LQYDTVLVNFFALKLQNFNNILLSENINDKLQFDKLLNSMFKISQKFYTNYLRTI 485
Query: 263 SRDLEQN 269
DLE N
Sbjct: 486 F-DLENN 491
>gnl|CDD|181450 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 27.4 bits (61), Expect = 7.8
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 257 NYLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTIV 301
+ LK + R L+ ++F + M K +++QK+++ P+ G +
Sbjct: 160 SALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETL 204
>gnl|CDD|184472 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 27.2 bits (61), Expect = 8.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLT 86
EI++ +G ++ V+ G + G LLT
Sbjct: 563 EIRAAQAGTVRGIAVKEGDAVAVGDTLLT 591
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerizes into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 27.1 bits (61), Expect = 9.4
Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 176 LNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIH 235
L LDL+ + ++ + + ++ EK ++ + + + RE
Sbjct: 268 LEELDLDEAEEENEEI----EERIDTLYDILEKEVKAKKFVEKNIDKLTDFLEHAREQNK 323
Query: 236 EQKNMLRHINELY----DEANL--EFANYLKEISRDLEQNQRTFADE 276
+ L + + Y DE E L+E+ +Q A++
Sbjct: 324 QLLLELDRLQQSYTLNEDELETVRELEKQLEELEAQYDQLVERIAEK 370
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.133 0.368
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,930,441
Number of extensions: 444410
Number of successful extensions: 1039
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1030
Number of HSP's successfully gapped: 83
Length of query: 440
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 344
Effective length of database: 3,920,105
Effective search space: 1348516120
Effective search space used: 1348516120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)