BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780386|ref|YP_003064799.1| Type I secretion membrane
fusion protein, HlyD [Candidatus Liberibacter asiaticus str. psy62]
(440 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780386|ref|YP_003064799.1| Type I secretion membrane fusion protein, HlyD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 440
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/440 (100%), Positives = 440/440 (100%)
Query: 1 MHHFMWKNLKRNHPASLKRMTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIK 60
MHHFMWKNLKRNHPASLKRMTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIK
Sbjct: 1 MHHFMWKNLKRNHPASLKRMTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIK 60
Query: 61 SPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDFL 120
SPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDFL
Sbjct: 61 SPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDFL 120
Query: 121 NNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLD 180
NNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLD
Sbjct: 121 NNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLD 180
Query: 181 LENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNM 240
LENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNM
Sbjct: 181 LENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNM 240
Query: 241 LRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTI 300
LRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTI
Sbjct: 241 LRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTI 300
Query: 301 VYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIRE 360
VYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIRE
Sbjct: 301 VYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIRE 360
Query: 361 KKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNT 420
KKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNT
Sbjct: 361 KKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNT 420
Query: 421 TLAQEIIHPITDNWPKIFER 440
TLAQEIIHPITDNWPKIFER
Sbjct: 421 TLAQEIIHPITDNWPKIFER 440
>gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 206
Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 354 HYADIREKKFKAIIEKIDPIISQQDNNL 381
+Y DI EKKF++I ++ D +NL
Sbjct: 61 YYGDISEKKFRSIFKEADRSRGDTSHNL 88
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1828
Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 124/272 (45%), Gaps = 63/272 (23%)
Query: 22 LLSIIGIIGLITWSILLPIEISVSSSGEILNE------DNVVEIKSPFSGI-------IK 68
L+S+IG + T I +EIS+ S + + + DN+V S + I
Sbjct: 1061 LVSVIGSMSQSTTDISGKLEISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRIS 1120
Query: 69 KFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLE 128
+ E Q+LQ ++T + I++T + + V I +NK+
Sbjct: 1121 QRTQEISQQLLQNNDVITNQIIDSTSRVRGEIVDI-----------------SNKFIETS 1163
Query: 129 KAFESREEQLLDFLGKYHSTCSKVF---NYGISS---VYRSL-KMKLTRMRSIYLNRLD- 180
+ E REE+ L + S++ ++ ISS RSL + ++ ++ + L+ LD
Sbjct: 1164 RVLEQREEKFHSALDSFSDNISRILLDVDHTISSHTNESRSLIEQRIHEVKDV-LSNLDR 1222
Query: 181 -LENKSSLL----RALLSSHQKDLTMMKNLFEKNAVSQND---LNQQER------IVYKS 226
LE+ S + + + + ++ M++LF+KN ND L+ +ER I+ +
Sbjct: 1223 ALESYGSTVFKQFKEYVQCFETNMENMESLFDKN----NDSMLLSFKERSNILDNILSQR 1278
Query: 227 TLELRENI----HEQKNMLRHI--NELYDEAN 252
++E+ ++I H++ N + ++ ++Y+ AN
Sbjct: 1279 SMEISDSISGAFHKEGNAVVNVIDQQIYNAAN 1310
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 351 RFPHYADIREKKFKAIIEKID 371
R PHY +++ F +IE ID
Sbjct: 54 RTPHYYEVKSTIFTTLIEMID 74
>gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 395
Score = 24.3 bits (51), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 100 KVSIKNLRCHIDTEKSALDFLN----NKYDVLEKAFESREEQLLDFL 142
+V + + R I EK +L N + V+EK F S E+Q +FL
Sbjct: 285 RVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFL 331
>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
str. psy62]
Length = 440
Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 28/185 (15%)
Query: 48 GEILNEDNVVEIKSP--FSG-IIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIK 104
G IL++ ++ SP F+G +F V G ++ G L +L K +
Sbjct: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI------------LEELAK--MP 103
Query: 105 NLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYG----ISSV 160
NLR E S F N K D+LE E L D + ++ G +SS+
Sbjct: 104 NLRLANPGEFSRRAFENGKIDLLEA------ESLADLISSETEMQRRLSMEGMSGELSSL 157
Query: 161 YRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQE 220
Y KLT +RS LD + + D+ +KN + +SQ L +
Sbjct: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH-ISQGKLGEII 216
Query: 221 RIVYK 225
R YK
Sbjct: 217 RNGYK 221
>gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus
Liberibacter asiaticus str. psy62]
Length = 152
Score = 23.5 bits (49), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 30/116 (25%)
Query: 7 KNLKRNHPASLKRMTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIKSPFSGI 66
N++ N+ S+K ++GL+T +LLP D+V+ P S +
Sbjct: 54 SNIRGNYAHSIKD--------VVGLVTRRVLLP--------------DHVI----PLSVL 87
Query: 67 IKKFQVENGSQI----LQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALD 118
+ + + G+++ QG ++ I +D +++KN+ + S +D
Sbjct: 88 HRPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVD 143
>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 820
Score = 23.5 bits (49), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 20/71 (28%)
Query: 252 NLEFANYLKEISRDLEQNQRTFADEMSKLTILE--------------------KTREQKT 291
N++ YLKEIS +L + +A +M + + + T KT
Sbjct: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
Query: 292 ILSPIAGTIVY 302
L PI GT +Y
Sbjct: 148 TLWPIEGTNLY 158
>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
Liberibacter asiaticus str. psy62]
Length = 833
Score = 23.5 bits (49), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 181 LENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRE-----NIH 235
L+ S LR+ L + M+ + K +S D +E I K TL L+ N+
Sbjct: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
Query: 236 EQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQ 289
+KN+L E L N + IS +EQ+ + ++ I E T ++
Sbjct: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 750
Score = 23.1 bits (48), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 352 FPHYADIREKKFKAIIEKIDPIISQ 376
FP +I KF ++++ DPI+SQ
Sbjct: 285 FPLNPEITADKFLTLMQENDPIVSQ 309
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273,424
Number of Sequences: 1233
Number of extensions: 11552
Number of successful extensions: 56
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 25
length of query: 440
length of database: 328,796
effective HSP length: 77
effective length of query: 363
effective length of database: 233,855
effective search space: 84889365
effective search space used: 84889365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)