Query gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 426 No_of_seqs 136 out of 2650 Neff 7.2 Searched_HMMs 33803 Date Wed Jun 1 13:12:28 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780387.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2nwl_A GLTPH, glutamate sympo 100.0 0 0 633.4 35.7 399 11-417 4-422 (422) 2 >2nwl_A GLTPH, glutamate sympo 98.0 0.00068 2E-08 40.2 19.4 229 8-239 5-242 (422) 3 >1exn_A 5'-exonuclease, 5'-nuc 22.1 41 0.0012 12.8 2.2 41 332-372 4-44 (80) 4 >1o26_A Thymidylate synthase T 19.7 34 0.001 13.2 0.6 25 291-315 150-174 (232) 5 >2akh_X Protein-export membran 15.2 59 0.0017 11.9 5.9 66 95-174 8-73 (77) 6 >2cfa_A THYX, thymidylate synt 15.1 52 0.0015 12.2 0.6 26 290-315 145-170 (217) 7 >1kyz_A COMT, caffeic acid 3-O 13.9 64 0.0019 11.6 1.1 13 97-109 7-19 (91) 8 >2v50_A Multidrug resistance p 12.0 74 0.0022 11.3 7.2 91 156-254 117-223 (248) 9 >3din_E Preprotein translocase 11.8 60 0.0018 11.8 0.2 72 88-173 1-72 (76) 10 >2yr5_A Pro-enzyme of L-phenyl 10.8 81 0.0024 11.1 1.1 8 389-396 117-124 (174) No 1 >>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound region, transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* (A:) Probab=100.00 E-value=0 Score=633.43 Aligned_cols=399 Identities=27% Similarity=0.529 Sum_probs=371.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 26358999999999999999999999577------899987666999999999999999999999961343024677799 Q gi|254780387|r 11 IRPPLYKILYIQVLVAIFSGMALGHFVPQ------IGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIF 84 (426) Q Consensus 11 ~~~~~~~~L~~~ilig~v~Gi~~G~~~~~------~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~ 84 (426) .|++...++..|+++|+++|+++|.++++ +..|++++||+|+|++||+++|+||+|++.|+++++ .++.||++ T Consensus 4 ~~~~~k~sl~~~ilialilGi~lG~~~~~~~~~~~~~~~l~~~G~lfi~lLkm~V~PlVf~sii~~I~~L~-~~~~g~l~ 82 (422) T 2nwl_A 4 YRKYIEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASIS-PARLGRVG 82 (422) T ss_dssp ------CCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-TTTHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHH T ss_conf 88862266999999999999999999543220278999999999999999999999999999999997455-11012279 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHH Q ss_conf 99999999999999999999987730246878543442111110013334430899999885205478632157057999 Q gi|254780387|r 85 WKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLI 164 (426) Q Consensus 85 ~kti~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iiv 164 (426) .|++.||+.++.+|+.+|+.++.+++||.+.+.+... .+....+..+..+.+.+++|+|+++++.++|.+++++ T Consensus 83 ~~~~~~f~~~t~~A~~ig~~~~~~~~pg~~~~~~~~~------~~~~~~~~~~~~~~~~~~ip~ni~~~~~~~~~~~~~~ 156 (422) T 2nwl_A 83 VKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGG------QQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIF 156 (422) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCC------CCC-----CCTHHHHGGGSCSCHHHHHHTCCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH------HHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHH T ss_conf 9999999999999999999999876013332200103------3204321026999999825521798874577430367 Q ss_pred HHHHHHHHHHCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 999999995215--------643024898999999999999998654533378899999985107400246899999999 Q gi|254780387|r 165 VALLFGISLSLV--------GEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLY 236 (426) Q Consensus 165 fai~~GiA~~~~--------~~k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~ 236 (426) +++++|+++... +||++++.+++++++++++|+++|+|+++|+|+||+++++.+++|.+.+.++++++.++| T Consensus 157 ~ail~gi~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ii~l~P~gvf~lia~~~~~~g~~~l~~l~~~~~~~~ 236 (422) T 2nwl_A 157 FAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVY 236 (422) T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTTGGGCCTHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 88888999998402210345667889999999999999756887776789999999999874135577888899999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH Q ss_conf 99988779999999963286603443200014677764214310079999999844899758446767777533752158 Q gi|254780387|r 237 ATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNI 316 (426) Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~~gv~~~i~~fviPlG~tinm~G~a~ 316 (426) .++.++.+++++++.+++|+||++++|+.+|++++||+|+||+||+|+++||+||+|+||++++|++|+|+|+||||+++ T Consensus 237 ~~~~i~~~v~~~~~~~~~~~np~~~~~~~~~~~~~af~T~SS~atlP~~~~~~~k~gv~~~v~~~v~Plg~~~n~~G~a~ 316 (422) T 2nwl_A 237 VGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTAL 316 (422) T ss_dssp HHHHHHHHHTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTSCCHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCEECCCCHHH T ss_conf 99999999999999998489838886431101430111166655527899999984999240020245200120576047 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHHH Q ss_conf 999999999985098799899999999999996213684325899999999861599899------99999977776435 Q gi|254780387|r 317 YITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIA------GMTLILGVDRFMSE 390 (426) Q Consensus 317 ~~~~~~iFia~~~gi~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~~------~i~ll~~id~~~D~ 390 (426) |++++++|++|.||+|++++|++.++++++++|+|+||+||++++....++..+ |+|.| ++++++++||++|| T Consensus 317 ~~~~~~ifia~~~g~~l~~~~~~~~~~~~~l~s~g~~gvPg~~~v~~~~v~~~~-glp~~~~~~~~~i~li~~id~l~D~ 395 (422) T 2nwl_A 317 YQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSV-GLPLTDPNVAAAYAMILGIDAILDM 395 (422) T ss_dssp HHHHHHHHHHHHHTCCCCSSCCHHHHHHHHHHHHHSCSSSSHHHHHHHHHHHHH-TCCTTSTTHHHHHHHHHTTHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHCCH T ss_conf 899999999987088999899999999999999861785067999999999984-9987641156588888749855166 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 678998767799999999882510489 Q gi|254780387|r 391 CRSVTNFIGNAVMTVVVSRWEKKLDPK 417 (426) Q Consensus 391 ~rT~~NV~gd~~~a~iv~~~~~~~d~~ 417 (426) +||++||+||++++.+++|++|++|+| T Consensus 396 ~rT~~Nv~g~~~~~~iv~~~~~~~~~e 422 (422) T 2nwl_A 396 GRTMVNVTGDLTGTAIVAKTEGTLVPR 422 (422) T ss_dssp HHHHHHHHHHHHHHHHHHHHC------ T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 089994887899999999973887899 No 2 >>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound region, transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* (A:) Probab=98.03 E-value=0.00068 Score=40.17 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=144.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 00026358999999999999999999999-----5778999876669999999999999999999999613430246777 Q gi|254780387|r 8 HGDIRPPLYKILYIQVLVAIFSGMALGHF-----VPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQ 82 (426) Q Consensus 8 ~~~~~~~~~~~L~~~ilig~v~Gi~~G~~-----~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gk 82 (426) +-++|+++++++...+++|+++|+.++.. .-++....+-+=--.++++=...+=.-..+-+....+-+..+-.+| T Consensus 5 ~~~~k~sl~~~ilialilGi~lG~~~~~~~~~~~~~~~l~~~G~lfi~lLkm~V~PlVf~sii~~I~~L~~~~~g~l~~~ 84 (422) T 2nwl_A 5 RKYIEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVK 84 (422) T ss_dssp -----CCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 88622669999999999999999995432202789999999999999999999999999999999974551101227999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHH Q ss_conf 99999999999999999999999877302468785434-42111110013334430899999885205478632157057 Q gi|254780387|r 83 IFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLK-SLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQ 161 (426) Q Consensus 83 i~~kti~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~ 161 (426) .....+........++...+......-........... .....+..+. ....+.+.+.+.+|+|.+.+...+++++ T Consensus 85 ~~~~f~~~t~~A~~ig~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~---~~~~ip~ni~~~~~~~~~~~~~~~ail~ 161 (422) T 2nwl_A 85 IVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHI---LLDIVPTNPFGALANGQVLPTIFFAIIL 161 (422) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCCCCC-----CCTHHH---HGGGSCSCHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHH---HHHHCCCCHHHHHHCCCCCCHHHHHHHH T ss_conf 9999999999999999999987601333220010332043210269999---9982552179887457743036788888 Q ss_pred HHHHHHHHHH---HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 9999999999---9521564302489899999999999999865453337889999998510740024689999999999 Q gi|254780387|r 162 TLIVALLFGI---SLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYAT 238 (426) Q Consensus 162 iivfai~~Gi---A~~~~~~k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~ 238 (426) .++++.++|. ....-++.-..+.+-+++.-.-+.+.+-+...+.=++..+-.....+...+..+..+...+...... T Consensus 162 gi~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ii~l~P~gvf~lia~~~~~~g~~~l~~l~~~~~~~~~~~~i 241 (422) T 2nwl_A 162 GIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTL 241 (422) T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTTGGGCCTHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999840221034566788999999999999975688777678999999999987413557788889999999999999 Q ss_pred H Q ss_conf 9 Q gi|254780387|r 239 S 239 (426) Q Consensus 239 ~ 239 (426) . T Consensus 242 ~ 242 (422) T 2nwl_A 242 Q 242 (422) T ss_dssp H T ss_pred H T ss_conf 9 No 3 >>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} (A:182-261) Probab=22.11 E-value=41 Score=12.79 Aligned_cols=41 Identities=17% Similarity=-0.003 Sum_probs=31.4 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 79989999999999999621368432589999999986159 Q gi|254780387|r 332 PLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPS 372 (426) Q Consensus 332 ~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~g 372 (426) .+++.|++-...++--.|-..+||||-|-.+..-.+..+.. T Consensus 4 Gv~p~q~~d~~~L~GD~sD~ipGV~GIG~ktA~~Li~~~gs 44 (80) T 1exn_A 4 VDDVEQFISLKAIXGDLGDNIRGVEGIGAKRGYNIIREFGN 44 (80) T ss_dssp SSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCS T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 99899999999971983136899997679999999999599 No 4 >>1o26_A Thymidylate synthase THYX; TM0449, thymidylate synthase complementing protein, structural genomics, JCSG, PSI; HET: FAD UMP PGE; 1.60A {Thermotoga maritima} (A:) Probab=19.73 E-value=34 Score=13.23 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=19.4 Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCHH Q ss_conf 4489975844676777753375215 Q gi|254780387|r 291 EAGCHRSIVSMVVPTGYSFNLDGSN 315 (426) Q Consensus 291 ~~gv~~~i~~fviPlG~tinm~G~a 315 (426) +.|++++.+++++|+|+..+.--++ T Consensus 150 ~~gi~~E~AR~iLP~a~~t~~~~t~ 174 (232) T 1o26_A 150 ESGVPREVARIVLPLNLYTRFFWTV 174 (232) T ss_dssp HTTCCHHHHGGGSBTTBEEEEEEEE T ss_pred HCCCCHHHHHHHCCCCCEEEEEEEC T ss_conf 7698688998757776389999984 No 5 >>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X (X:) Probab=15.18 E-value=59 Score=11.86 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=32.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 99999999999877302468785434421111100133344308999998852054786321570579999999999952 Q gi|254780387|r 95 SMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLS 174 (426) Q Consensus 95 t~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai~~GiA~~ 174 (426) -.+-.++.++...++||+.+.+.........+..-... .+-.+++..+ .-++++++|...+..+.. T Consensus 8 i~ii~si~LI~~VLlQ~~K~~gl~~~~ggg~~~~~~g~---r~~~~~L~k~-----------T~vla~~F~v~sl~l~~~ 73 (77) T 2akh_X 8 VFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGS---SGSGNFMTRM-----------TALLATLFFIISLVLGNI 73 (77) T ss_pred HHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHH-----------HHHHHHHHHHHHHHHHHH T ss_conf 99999999999850235898853023467644667476---5330299999-----------999999999999999998 No 6 >>2cfa_A THYX, thymidylate synthase; FDTS, TSCP, flavin dependent thymidylate synthase FAD, flavoprotein, nucleotide biosynthesis; HET: CME FAD; 2.3A {Paramecium bursaria chlorella virus 1} PDB: 2cfa_B* (A:) Probab=15.10 E-value=52 Score=12.17 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=19.5 Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCHH Q ss_conf 84489975844676777753375215 Q gi|254780387|r 290 EEAGCHRSIVSMVVPTGYSFNLDGSN 315 (426) Q Consensus 290 e~~gv~~~i~~fviPlG~tinm~G~a 315 (426) .+.|++++.+++++|.|+..+.--++ T Consensus 145 l~~g~~~E~AR~iLP~~~~t~~~~t~ 170 (217) T 2cfa_A 145 LEKGIAKECARFILPLSTPTTIYMSG 170 (217) T ss_dssp HHTTCCHHHHGGGSCTTSEEEEEEEE T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 88778899998863045016999986 No 7 >>1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} (A:30-120) Probab=13.87 E-value=64 Score=11.64 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=4.6 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999998773 Q gi|254780387|r 97 FALVIGLIVGNIA 109 (426) Q Consensus 97 iA~~igl~~~~~~ 109 (426) +-+++-|.+..++ T Consensus 7 Lk~AveLgI~diI 19 (91) T 1kyz_A 7 LKSALELDLLEII 19 (91) T ss_dssp HHHHHHTTHHHHH T ss_pred HHHHHHCCCHHHH T ss_conf 9999987828899 No 8 >>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} (A:505-566,A:867-1052) Probab=11.99 E-value=74 Score=11.31 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=44.6 Q ss_pred HCCCHHHHHHHHHHHHHHHCC----------CCC-CCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH- Q ss_conf 157057999999999995215----------643-02489899999999999999----86545333788999999851- Q gi|254780387|r 156 SGNILQTLIVALLFGISLSLV----------GEK-SDTIRKCLEEINFPVFRMVS----IVMRIAPLGAFGAMSFTIGK- 219 (426) Q Consensus 156 ~gniL~iivfai~~GiA~~~~----------~~k-~~~l~~~~~~~~~v~~kii~----~vi~laPigvf~lia~~~a~- 219 (426) +-|+..++-+.+.+|++.... .++ .++-....++..+...-++. .+.-+.|+. .++ T Consensus 117 ~ln~~sl~~~il~iGi~vd~aI~iv~~~~~~~~~g~~~~~a~~~a~~~~~~~Il~t~lt~~~~f~pl~--------f~~~ 188 (248) T 2v50_A 117 SNDVFFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLA--------ISTG 188 (248) T ss_dssp CBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH--------TCCS T ss_pred CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCC T ss_conf 84799999999999999847238999999999869999999999999999999999999999999998--------6448 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 07400246899999999999887799999999632 Q gi|254780387|r 220 YGLSSISNLIFLVFCLYATSAFFILGVLGILARFC 254 (426) Q Consensus 220 ~g~~~l~~l~~~v~~~~~~~~~~~~~~~~l~~~~~ 254 (426) .+.+.+.+++..+..-.+...+..+...|.+.... T Consensus 189 ~~~~~~~~fg~~~~~gil~s~i~~l~l~Pal~~~~ 223 (248) T 2v50_A 189 AGSGSQHAIGTGVIGGMVTATVLAIFWVPLFYVAV 223 (248) T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-- T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 81776530699999999999999999999999999 No 9 >>3din_E Preprotein translocase subunit SECG; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga SP} (E:) Probab=11.76 E-value=60 Score=11.80 Aligned_cols=72 Identities=11% Similarity=-0.029 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHH Q ss_conf 99999999999999999987730246878543442111110013334430899999885205478632157057999999 Q gi|254780387|r 88 MFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVAL 167 (426) Q Consensus 88 i~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai 167 (426) +..++..-.+-+++.++...++||+.+.+.........+..-.......++.+-+ .-++.+++|.. T Consensus 1 M~~~l~vi~ii~~i~LI~~VLlQ~~K~~gl~~~~ggg~~~~~fg~~~~~~~L~k~--------------T~~la~~F~v~ 66 (76) T 3din_E 1 MKTFFLIVHTIISVALIYMVQVQMSKFSELGGAFGSGGLHTVFGRRKGLDTGGKI--------------TLVLSVLFFVS 66 (76) T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHTCCSSCCTTCCCCCCSSCSSCTTHH--------------HHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH--------------HHHHHHHHHHH T ss_conf 9207999999999999999730258776542455677546675776502089999--------------99999999999 Q ss_pred HHHHHH Q ss_conf 999995 Q gi|254780387|r 168 LFGISL 173 (426) Q Consensus 168 ~~GiA~ 173 (426) .+..+. T Consensus 67 sl~L~~ 72 (76) T 3din_E 67 CVVTAF 72 (76) T ss_dssp HHHHHT T ss_pred HHHHHH T ss_conf 999999 No 10 >>2yr5_A Pro-enzyme of L-phenylalanine oxidase; amino oxidase, flavoenzyme, oxidoreductase; HET: FAD; 1.25A {Pseudomonas SP} PDB: 2yr4_A* 2yr6_A* (A:172-194,A:472-622) Probab=10.81 E-value=81 Score=11.08 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=0.0 Q ss_pred HHHHHHHH Q ss_conf 35678998 Q gi|254780387|r 389 SECRSVTN 396 (426) Q Consensus 389 D~~rT~~N 396 (426) ||+||++| T Consensus 117 ~m~rtmin 124 (174) T 2yr5_A 117 GMYRTMVN 124 (174) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 67899999 Done!