Query         gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 426
No_of_seqs    136 out of 2650
Neff          7.2 
Searched_HMMs 33803
Date          Wed Jun  1 13:12:28 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780387.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2nwl_A GLTPH, glutamate sympo 100.0       0       0  633.4  35.7  399   11-417     4-422 (422)
  2 >2nwl_A GLTPH, glutamate sympo  98.0 0.00068   2E-08   40.2  19.4  229    8-239     5-242 (422)
  3 >1exn_A 5'-exonuclease, 5'-nuc  22.1      41  0.0012   12.8   2.2   41  332-372     4-44  (80)
  4 >1o26_A Thymidylate synthase T  19.7      34   0.001   13.2   0.6   25  291-315   150-174 (232)
  5 >2akh_X Protein-export membran  15.2      59  0.0017   11.9   5.9   66   95-174     8-73  (77)
  6 >2cfa_A THYX, thymidylate synt  15.1      52  0.0015   12.2   0.6   26  290-315   145-170 (217)
  7 >1kyz_A COMT, caffeic acid 3-O  13.9      64  0.0019   11.6   1.1   13   97-109     7-19  (91)
  8 >2v50_A Multidrug resistance p  12.0      74  0.0022   11.3   7.2   91  156-254   117-223 (248)
  9 >3din_E Preprotein translocase  11.8      60  0.0018   11.8   0.2   72   88-173     1-72  (76)
 10 >2yr5_A Pro-enzyme of L-phenyl  10.8      81  0.0024   11.1   1.1    8  389-396   117-124 (174)

No 1  
>>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound region, transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* (A:)
Probab=100.00  E-value=0  Score=633.43  Aligned_cols=399  Identities=27%  Similarity=0.529  Sum_probs=371.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             26358999999999999999999999577------899987666999999999999999999999961343024677799
Q gi|254780387|r   11 IRPPLYKILYIQVLVAIFSGMALGHFVPQ------IGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIF   84 (426)
Q Consensus        11 ~~~~~~~~L~~~ilig~v~Gi~~G~~~~~------~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~   84 (426)
                      .|++...++..|+++|+++|+++|.++++      +..|++++||+|+|++||+++|+||+|++.|+++++ .++.||++
T Consensus         4 ~~~~~k~sl~~~ilialilGi~lG~~~~~~~~~~~~~~~l~~~G~lfi~lLkm~V~PlVf~sii~~I~~L~-~~~~g~l~   82 (422)
T 2nwl_A            4 YRKYIEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASIS-PARLGRVG   82 (422)
T ss_dssp             ------CCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-TTTHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHH
T ss_conf             88862266999999999999999999543220278999999999999999999999999999999997455-11012279


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHH
Q ss_conf             99999999999999999999987730246878543442111110013334430899999885205478632157057999
Q gi|254780387|r   85 WKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLI  164 (426)
Q Consensus        85 ~kti~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iiv  164 (426)
                      .|++.||+.++.+|+.+|+.++.+++||.+.+.+...      .+....+..+..+.+.+++|+|+++++.++|.+++++
T Consensus        83 ~~~~~~f~~~t~~A~~ig~~~~~~~~pg~~~~~~~~~------~~~~~~~~~~~~~~~~~~ip~ni~~~~~~~~~~~~~~  156 (422)
T 2nwl_A           83 VKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGG------QQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIF  156 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCC------CCC-----CCTHHHHGGGSCSCHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH------HHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHH
T ss_conf             9999999999999999999999876013332200103------3204321026999999825521798874577430367


Q ss_pred             HHHHHHHHHHCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999999995215--------643024898999999999999998654533378899999985107400246899999999
Q gi|254780387|r  165 VALLFGISLSLV--------GEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLY  236 (426)
Q Consensus       165 fai~~GiA~~~~--------~~k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~  236 (426)
                      +++++|+++...        +||++++.+++++++++++|+++|+|+++|+|+||+++++.+++|.+.+.++++++.++|
T Consensus       157 ~ail~gi~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ii~l~P~gvf~lia~~~~~~g~~~l~~l~~~~~~~~  236 (422)
T 2nwl_A          157 FAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVY  236 (422)
T ss_dssp             HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTTGGGCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             88888999998402210345667889999999999999756887776789999999999874135577888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             99988779999999963286603443200014677764214310079999999844899758446767777533752158
Q gi|254780387|r  237 ATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNI  316 (426)
Q Consensus       237 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~~gv~~~i~~fviPlG~tinm~G~a~  316 (426)
                      .++.++.+++++++.+++|+||++++|+.+|++++||+|+||+||+|+++||+||+|+||++++|++|+|+|+||||+++
T Consensus       237 ~~~~i~~~v~~~~~~~~~~~np~~~~~~~~~~~~~af~T~SS~atlP~~~~~~~k~gv~~~v~~~v~Plg~~~n~~G~a~  316 (422)
T 2nwl_A          237 VGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTAL  316 (422)
T ss_dssp             HHHHHHHHHTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCEECCCCHHH
T ss_conf             99999999999999998489838886431101430111166655527899999984999240020245200120576047


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHHH
Q ss_conf             999999999985098799899999999999996213684325899999999861599899------99999977776435
Q gi|254780387|r  317 YITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIA------GMTLILGVDRFMSE  390 (426)
Q Consensus       317 ~~~~~~iFia~~~gi~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~~------~i~ll~~id~~~D~  390 (426)
                      |++++++|++|.||+|++++|++.++++++++|+|+||+||++++....++..+ |+|.|      ++++++++||++||
T Consensus       317 ~~~~~~ifia~~~g~~l~~~~~~~~~~~~~l~s~g~~gvPg~~~v~~~~v~~~~-glp~~~~~~~~~i~li~~id~l~D~  395 (422)
T 2nwl_A          317 YQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSV-GLPLTDPNVAAAYAMILGIDAILDM  395 (422)
T ss_dssp             HHHHHHHHHHHHHTCCCCSSCCHHHHHHHHHHHHHSCSSSSHHHHHHHHHHHHH-TCCTTSTTHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHCCH
T ss_conf             899999999987088999899999999999999861785067999999999984-9987641156588888749855166


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             678998767799999999882510489
Q gi|254780387|r  391 CRSVTNFIGNAVMTVVVSRWEKKLDPK  417 (426)
Q Consensus       391 ~rT~~NV~gd~~~a~iv~~~~~~~d~~  417 (426)
                      +||++||+||++++.+++|++|++|+|
T Consensus       396 ~rT~~Nv~g~~~~~~iv~~~~~~~~~e  422 (422)
T 2nwl_A          396 GRTMVNVTGDLTGTAIVAKTEGTLVPR  422 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             089994887899999999973887899


No 2  
>>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound region, transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* (A:)
Probab=98.03  E-value=0.00068  Score=40.17  Aligned_cols=229  Identities=12%  Similarity=0.066  Sum_probs=144.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             00026358999999999999999999999-----5778999876669999999999999999999999613430246777
Q gi|254780387|r    8 HGDIRPPLYKILYIQVLVAIFSGMALGHF-----VPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQ   82 (426)
Q Consensus         8 ~~~~~~~~~~~L~~~ilig~v~Gi~~G~~-----~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gk   82 (426)
                      +-++|+++++++...+++|+++|+.++..     .-++....+-+=--.++++=...+=.-..+-+....+-+..+-.+|
T Consensus         5 ~~~~k~sl~~~ilialilGi~lG~~~~~~~~~~~~~~~l~~~G~lfi~lLkm~V~PlVf~sii~~I~~L~~~~~g~l~~~   84 (422)
T 2nwl_A            5 RKYIEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVK   84 (422)
T ss_dssp             -----CCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             88622669999999999999999995432202789999999999999999999999999999999974551101227999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHH
Q ss_conf             99999999999999999999999877302468785434-42111110013334430899999885205478632157057
Q gi|254780387|r   83 IFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLK-SLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQ  161 (426)
Q Consensus        83 i~~kti~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~  161 (426)
                      .....+........++...+......-........... .....+..+.   ....+.+.+.+.+|+|.+.+...+++++
T Consensus        85 ~~~~f~~~t~~A~~ig~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~---~~~~ip~ni~~~~~~~~~~~~~~~ail~  161 (422)
T 2nwl_A           85 IVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHI---LLDIVPTNPFGALANGQVLPTIFFAIIL  161 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCCCCC-----CCTHHH---HGGGSCSCHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHH---HHHHCCCCHHHHHHCCCCCCHHHHHHHH
T ss_conf             9999999999999999999987601333220010332043210269999---9982552179887457743036788888


Q ss_pred             HHHHHHHHHH---HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             9999999999---9521564302489899999999999999865453337889999998510740024689999999999
Q gi|254780387|r  162 TLIVALLFGI---SLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYAT  238 (426)
Q Consensus       162 iivfai~~Gi---A~~~~~~k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~  238 (426)
                      .++++.++|.   ....-++.-..+.+-+++.-.-+.+.+-+...+.=++..+-.....+...+..+..+...+......
T Consensus       162 gi~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ii~l~P~gvf~lia~~~~~~g~~~l~~l~~~~~~~~~~~~i  241 (422)
T 2nwl_A          162 GIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTL  241 (422)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTTGGGCCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999840221034566788999999999999975688777678999999999987413557788889999999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780387|r  239 S  239 (426)
Q Consensus       239 ~  239 (426)
                      .
T Consensus       242 ~  242 (422)
T 2nwl_A          242 Q  242 (422)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 3  
>>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} (A:182-261)
Probab=22.11  E-value=41  Score=12.79  Aligned_cols=41  Identities=17%  Similarity=-0.003  Sum_probs=31.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             79989999999999999621368432589999999986159
Q gi|254780387|r  332 PLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPS  372 (426)
Q Consensus       332 ~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~g  372 (426)
                      .+++.|++-...++--.|-..+||||-|-.+..-.+..+..
T Consensus         4 Gv~p~q~~d~~~L~GD~sD~ipGV~GIG~ktA~~Li~~~gs   44 (80)
T 1exn_A            4 VDDVEQFISLKAIXGDLGDNIRGVEGIGAKRGYNIIREFGN   44 (80)
T ss_dssp             SSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCS
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             99899999999971983136899997679999999999599


No 4  
>>1o26_A Thymidylate synthase THYX; TM0449, thymidylate synthase complementing protein, structural genomics, JCSG, PSI; HET: FAD UMP PGE; 1.60A {Thermotoga maritima} (A:)
Probab=19.73  E-value=34  Score=13.23  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=19.4

Q ss_pred             HCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             4489975844676777753375215
Q gi|254780387|r  291 EAGCHRSIVSMVVPTGYSFNLDGSN  315 (426)
Q Consensus       291 ~~gv~~~i~~fviPlG~tinm~G~a  315 (426)
                      +.|++++.+++++|+|+..+.--++
T Consensus       150 ~~gi~~E~AR~iLP~a~~t~~~~t~  174 (232)
T 1o26_A          150 ESGVPREVARIVLPLNLYTRFFWTV  174 (232)
T ss_dssp             HTTCCHHHHGGGSBTTBEEEEEEEE
T ss_pred             HCCCCHHHHHHHCCCCCEEEEEEEC
T ss_conf             7698688998757776389999984


No 5  
>>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X (X:)
Probab=15.18  E-value=59  Score=11.86  Aligned_cols=66  Identities=20%  Similarity=0.199  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999877302468785434421111100133344308999998852054786321570579999999999952
Q gi|254780387|r   95 SMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLS  174 (426)
Q Consensus        95 t~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai~~GiA~~  174 (426)
                      -.+-.++.++...++||+.+.+.........+..-...   .+-.+++..+           .-++++++|...+..+..
T Consensus         8 i~ii~si~LI~~VLlQ~~K~~gl~~~~ggg~~~~~~g~---r~~~~~L~k~-----------T~vla~~F~v~sl~l~~~   73 (77)
T 2akh_X            8 VFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGS---SGSGNFMTRM-----------TALLATLFFIISLVLGNI   73 (77)
T ss_pred             HHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_conf             99999999999850235898853023467644667476---5330299999-----------999999999999999998


No 6  
>>2cfa_A THYX, thymidylate synthase; FDTS, TSCP, flavin dependent thymidylate synthase FAD, flavoprotein, nucleotide biosynthesis; HET: CME FAD; 2.3A {Paramecium bursaria chlorella virus 1} PDB: 2cfa_B* (A:)
Probab=15.10  E-value=52  Score=12.17  Aligned_cols=26  Identities=15%  Similarity=0.206  Sum_probs=19.5

Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             84489975844676777753375215
Q gi|254780387|r  290 EEAGCHRSIVSMVVPTGYSFNLDGSN  315 (426)
Q Consensus       290 e~~gv~~~i~~fviPlG~tinm~G~a  315 (426)
                      .+.|++++.+++++|.|+..+.--++
T Consensus       145 l~~g~~~E~AR~iLP~~~~t~~~~t~  170 (217)
T 2cfa_A          145 LEKGIAKECARFILPLSTPTTIYMSG  170 (217)
T ss_dssp             HHTTCCHHHHGGGSCTTSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             88778899998863045016999986


No 7  
>>1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} (A:30-120)
Probab=13.87  E-value=64  Score=11.64  Aligned_cols=13  Identities=15%  Similarity=0.087  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999998773
Q gi|254780387|r   97 FALVIGLIVGNIA  109 (426)
Q Consensus        97 iA~~igl~~~~~~  109 (426)
                      +-+++-|.+..++
T Consensus         7 Lk~AveLgI~diI   19 (91)
T 1kyz_A            7 LKSALELDLLEII   19 (91)
T ss_dssp             HHHHHHTTHHHHH
T ss_pred             HHHHHHCCCHHHH
T ss_conf             9999987828899


No 8  
>>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} (A:505-566,A:867-1052)
Probab=11.99  E-value=74  Score=11.31  Aligned_cols=91  Identities=14%  Similarity=0.161  Sum_probs=44.6

Q ss_pred             HCCCHHHHHHHHHHHHHHHCC----------CCC-CCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-
Q ss_conf             157057999999999995215----------643-02489899999999999999----86545333788999999851-
Q gi|254780387|r  156 SGNILQTLIVALLFGISLSLV----------GEK-SDTIRKCLEEINFPVFRMVS----IVMRIAPLGAFGAMSFTIGK-  219 (426)
Q Consensus       156 ~gniL~iivfai~~GiA~~~~----------~~k-~~~l~~~~~~~~~v~~kii~----~vi~laPigvf~lia~~~a~-  219 (426)
                      +-|+..++-+.+.+|++....          .++ .++-....++..+...-++.    .+.-+.|+.        .++ 
T Consensus       117 ~ln~~sl~~~il~iGi~vd~aI~iv~~~~~~~~~g~~~~~a~~~a~~~~~~~Il~t~lt~~~~f~pl~--------f~~~  188 (248)
T 2v50_A          117 SNDVFFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLA--------ISTG  188 (248)
T ss_dssp             CBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH--------TCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCC
T ss_conf             84799999999999999847238999999999869999999999999999999999999999999998--------6448


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             07400246899999999999887799999999632
Q gi|254780387|r  220 YGLSSISNLIFLVFCLYATSAFFILGVLGILARFC  254 (426)
Q Consensus       220 ~g~~~l~~l~~~v~~~~~~~~~~~~~~~~l~~~~~  254 (426)
                      .+.+.+.+++..+..-.+...+..+...|.+....
T Consensus       189 ~~~~~~~~fg~~~~~gil~s~i~~l~l~Pal~~~~  223 (248)
T 2v50_A          189 AGSGSQHAIGTGVIGGMVTATVLAIFWVPLFYVAV  223 (248)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             81776530699999999999999999999999999


No 9  
>>3din_E Preprotein translocase subunit SECG; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga SP} (E:)
Probab=11.76  E-value=60  Score=11.80  Aligned_cols=72  Identities=11%  Similarity=-0.029  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHH
Q ss_conf             99999999999999999987730246878543442111110013334430899999885205478632157057999999
Q gi|254780387|r   88 MFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVAL  167 (426)
Q Consensus        88 i~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai  167 (426)
                      +..++..-.+-+++.++...++||+.+.+.........+..-.......++.+-+              .-++.+++|..
T Consensus         1 M~~~l~vi~ii~~i~LI~~VLlQ~~K~~gl~~~~ggg~~~~~fg~~~~~~~L~k~--------------T~~la~~F~v~   66 (76)
T 3din_E            1 MKTFFLIVHTIISVALIYMVQVQMSKFSELGGAFGSGGLHTVFGRRKGLDTGGKI--------------TLVLSVLFFVS   66 (76)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHTCCSSCCTTCCCCCCSSCSSCTTHH--------------HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH--------------HHHHHHHHHHH
T ss_conf             9207999999999999999730258776542455677546675776502089999--------------99999999999


Q ss_pred             HHHHHH
Q ss_conf             999995
Q gi|254780387|r  168 LFGISL  173 (426)
Q Consensus       168 ~~GiA~  173 (426)
                      .+..+.
T Consensus        67 sl~L~~   72 (76)
T 3din_E           67 CVVTAF   72 (76)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
T ss_conf             999999


No 10 
>>2yr5_A Pro-enzyme of L-phenylalanine oxidase; amino oxidase, flavoenzyme, oxidoreductase; HET: FAD; 1.25A {Pseudomonas SP} PDB: 2yr4_A* 2yr6_A* (A:172-194,A:472-622)
Probab=10.81  E-value=81  Score=11.08  Aligned_cols=8  Identities=25%  Similarity=0.397  Sum_probs=0.0

Q ss_pred             HHHHHHHH
Q ss_conf             35678998
Q gi|254780387|r  389 SECRSVTN  396 (426)
Q Consensus       389 D~~rT~~N  396 (426)
                      ||+||++|
T Consensus       117 ~m~rtmin  124 (174)
T 2yr5_A          117 GMYRTMVN  124 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             67899999


Done!