RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter
DctA [Candidatus Liberibacter asiaticus str. psy62]
         (426 letters)



>gnl|CDD|31492 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production
           and conversion].
          Length = 415

 Score =  324 bits (832), Expect = 3e-89
 Identities = 179/411 (43%), Positives = 268/411 (65%), Gaps = 12/411 (2%)

Query: 12  RPPLYKILYIQVLVAIFSGMALGHFVPQIG--VQMQPLGDIFVKTTKMLITPVIFLTVST 69
           +      LY+QVL+ +  G+ +G F+P++G  + ++PLGDIF+K  KM+I P++F T+  
Sbjct: 1   KKSKKLSLYLQVLIGLILGILVGLFLPELGAAIYLKPLGDIFIKLIKMIIIPLVFFTLVL 60

Query: 70  GIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAH 129
           GIA + D+K +G++  K +  F V +  A+ IGL+V N+ +PG G+N+D  +L+T + + 
Sbjct: 61  GIASLGDLKKLGRLGGKTLIYFLVTTTLAIAIGLVVANVLQPGAGINIDPATLDTGAESE 120

Query: 130 IKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEK-SDTIRKCLE 188
           +      S + F+ D+IP     AL  GN+LQ L  A+LFG++L+ +GEK    +    E
Sbjct: 121 V------SILDFLLDIIPTNIFGALAEGNVLQILFFAILFGLALAALGEKGKPPVENLFE 174

Query: 189 EINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLG 248
            ++  +F++ + VMR+AP+G FG M+FT+ KYG  S+ +L  LV  +Y     F+  VLG
Sbjct: 175 SLSEAMFKVTNFVMRLAPIGVFGLMAFTVAKYGFGSLLSLGKLVLAVYLGLLLFVFVVLG 234

Query: 249 ILAR-FCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEE-AGCHRSIVSMVVPTG 306
           +L +    FS  K + ++ E +LL  STSSSE+ LP  M+K E+  G  +SIVS VVP G
Sbjct: 235 LLLKLLSGFSPFKFLRYISEALLLAFSTSSSEATLPVTMEKAEKSLGVPKSIVSFVVPLG 294

Query: 307 YSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAAT 366
           Y+FNLDG+ IY TLA LFI+QA  +PLSL  QL+LLL+AM++SKGAAGV G   + LAAT
Sbjct: 295 YTFNLDGTAIYQTLAALFIAQAYGIPLSLGQQLTLLLVAMLASKGAAGVPGGGLVVLAAT 354

Query: 367 ITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPK 417
           ++ V  LP+ G+ LILG+DRF+   R+ TN  G+AV TVVV++WE +    
Sbjct: 355 LSSVG-LPLEGLALILGIDRFLDMARTATNVTGDAVATVVVAKWEGEEKAD 404


>gnl|CDD|144095 pfam00375, SDF, Sodium:dicarboxylate symporter family. 
          Length = 387

 Score =  298 bits (766), Expect = 2e-81
 Identities = 136/394 (34%), Positives = 235/394 (59%), Gaps = 9/394 (2%)

Query: 19  LYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMK 78
           L +Q+L+ +  G+ LG F P++   ++PLGDIF+   KML+ P++F ++ +GIA + D K
Sbjct: 1   LTLQILIGLVLGVLLGLFFPEVAGWLKPLGDIFINLLKMLVVPLVFFSIVSGIASLGDGK 60

Query: 79  VIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSF 138
            +G++  K +  F V +  A +IGL+V  + +PG+G+ +   +         ++S + S 
Sbjct: 61  KLGKLGGKTLLYFLVTTAIAAIIGLLVALLFQPGVGLLISAAA------ESAQASESPSL 114

Query: 139 IGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMV 198
           + F+ ++IP    +AL  GN+LQ ++ A+LFGI+L+ +GEK   + K LE +N  + ++V
Sbjct: 115 LDFLLNIIPSNIFAALAEGNVLQVIVFAILFGIALAALGEKGKPLLKFLESLNEIIMKVV 174

Query: 199 SIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARF-CRFS 257
           + VM++AP+G F  ++ T+G +GL ++ +L   V  +Y   A  +  V  +L +F    +
Sbjct: 175 NWVMKLAPIGVFALIANTVGTFGLGTLGSLGKFVLTVYLALAIHLFVVYPLLLKFLTGLN 234

Query: 258 IIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEA-GCHRSIVSMVVPTGYSFNLDGSNI 316
             K +  +   +L   ST+SS + LP  ++  E+  G  +SI S V+P G + N+DG+ I
Sbjct: 235 PFKFLKKILPALLTAFSTASSAATLPVTLECAEKNLGVSKSIASFVLPLGATINMDGTAI 294

Query: 317 YITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIA 376
           Y+ +A +FI+QA  V LSL   L L+L A ++S GAAGV G   + LA  ++ +  LP+ 
Sbjct: 295 YLAVAAIFIAQAYGVDLSLGQLLLLILTATLASIGAAGVPGGGLVALALVLSALG-LPVE 353

Query: 377 GMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRW 410
           G+ LIL +DR +   R+  N  G+AV  V+V++ 
Sbjct: 354 GIALILAIDRILDMFRTALNVTGDAVAAVIVAKL 387


>gnl|CDD|38991 KOG3787, KOG3787, KOG3787, Glutamate/aspartate and neutral amino
           acid transporters [Amino acid transport and metabolism].
          Length = 507

 Score =  127 bits (320), Expect = 7e-30
 Identities = 100/447 (22%), Positives = 195/447 (43%), Gaps = 66/447 (14%)

Query: 19  LYIQVLVAIFSGMALGHFVPQIGVQMQPL------GDIFVKTTKMLITPVIFLTVSTGIA 72
           L +  +  +  G+ LG  +  + +    +      G++ ++  KM+I P+I  ++ +G+A
Sbjct: 18  LLLLTVSGVVLGVLLGFLLRPLSLSPDEIMYISFPGELLMRMLKMMILPLIVSSLISGLA 77

Query: 73  RMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKS 132
            + D K  G++  +A+  +   ++ A+++G+ +  I  PG         L  E +     
Sbjct: 78  SL-DAKASGRLGMRAVVYYMSTTIIAVILGIALVLIIHPGDPTKK--NELGREGLIDSNV 134

Query: 133 SHAKSFIGFMQDMIPDTALSA-------------------------------LTSG-NIL 160
           S   +F+  +++M P+  + A                                T G N+L
Sbjct: 135 STLDTFLDLIRNMFPENLVQATFQQYQTKYKPVTKASPGNATEEALPKGVPGYTDGMNVL 194

Query: 161 QTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAF---------- 210
             ++  ++FGI +  +GEK   +      +N  + ++VS +M  +P+G            
Sbjct: 195 GLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIMWYSPVGILFLIAGKILEM 254

Query: 211 ---GAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKE 267
              G  +  +G Y        +  V        F +L ++  +    R +  + I  L +
Sbjct: 255 EDLGVTARQLGMY--------VVTVILGLFIHGFIVLPLIYFV--VTRKNPFRFIAGLLQ 304

Query: 268 EVLLVLSTSSSESALPGLMKKMEEA-GCHRSIVSMVVPTGYSFNLDGSNIYITLATLFIS 326
            +     T+SS + LP   K +EE  G  + +   V+P G + N+DG+ +Y  +A +FI+
Sbjct: 305 ALATAFGTASSSATLPITFKCLEENLGVDKRVTRFVLPVGATINMDGTALYEAVAAIFIA 364

Query: 327 QATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDR 386
           Q  NV LS    +++ + A  +S GAAGV  +  +T+   +T V  LP   ++LI  VD 
Sbjct: 365 QLNNVELSFGQIVTISITATAASIGAAGVPQAGLVTMLIVLTAV-GLPTKDISLIFAVDW 423

Query: 387 FMSECRSVTNFIGNAVMTVVVSRWEKK 413
            +   R+  N +G+A+   +V    KK
Sbjct: 424 LLDRLRTTVNVLGDALGAGIVEHLSKK 450


>gnl|CDD|33431 COG3633, SstT, Na+/serine symporter [Amino acid transport and
           metabolism].
          Length = 407

 Score = 96.1 bits (239), Expect = 2e-20
 Identities = 86/373 (23%), Positives = 170/373 (45%), Gaps = 19/373 (5%)

Query: 19  LYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMK 78
           L  Q+L+ +  G+ L    P     +  LG +FV   K +   ++F+ V   IA  K  +
Sbjct: 16  LVKQILIGLVLGILLAIISPPAAEAVGLLGTLFVGALKAVAPVLVFILVMASIANHKKGQ 75

Query: 79  VIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSF 138
              +   + + + ++   F+  +  ++ + A P     + L S   +      S   +  
Sbjct: 76  ---KTNIRPIIVLYLLGTFSAALVAVIASFAFP---STLVLASSAGDISP--PSGIVEVL 127

Query: 139 IGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMV 198
              +  ++ D  ++AL + N +  L  A+  G++L      SDT +  + +++  V ++V
Sbjct: 128 KSLLMSLV-DNPINALLNANYIGILAWAIGLGLALR---HASDTTKNLVNDLSEAVSKIV 183

Query: 199 SIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARF-CRFS 257
            +V+R AP+G FG ++ T+ + G  ++     L+  L     F  L V  ++  +  R +
Sbjct: 184 KVVIRFAPIGIFGLVASTLAETGFGALWGYAQLLAVLVGCMLFVALVVNPLIVYWKIRRN 243

Query: 258 IIKLI-IFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNI 316
              L+   L+E  +    T SS + +P  M   ++ G      S+ +P G + N+ G+ I
Sbjct: 244 PYPLVLTCLRESGVTAFFTRSSAANIPVNMALCKKLGLDEDTYSVSIPLGATINMAGAAI 303

Query: 317 YITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSA--FITLAATITLVPS-- 372
            IT+ TL       +P+ L   L L ++A V + GA+GV G +   I LA ++  + +  
Sbjct: 304 TITVLTLAAVHTLGIPVDLPTALLLSVVASVCACGASGVAGGSLLLIPLACSLFGISNDV 363

Query: 373 -LPIAGMTLILGV 384
            + +  +  I+GV
Sbjct: 364 AMQVVAVGFIIGV 376


>gnl|CDD|32008 COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General
           function prediction only].
          Length = 458

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 81/388 (20%), Positives = 170/388 (43%), Gaps = 17/388 (4%)

Query: 47  LGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVG 106
           +G+ +V+  +M++ P++F+++ + IA++ +   +G+I    +      +  A +IG++V 
Sbjct: 69  VGNGYVRLLQMIVMPLVFISILSAIAKLDNASKLGKISLLTIGTLLFTTAIAALIGILVA 128

Query: 107 N---IAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGN---IL 160
               +   G+       +  +E   ++      +    +  +IP    + LT  N   I+
Sbjct: 129 LLFGLTAEGLVQGDAETARISEIQTYVGKVADLTIPQLILSLIPKNPFADLTGANPTSII 188

Query: 161 QTLIVALLFGISLSLVG----EKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFT 216
             +I A   GI+   +     EK +  +  ++ +   V ++V +V+R+ P G    M+  
Sbjct: 189 AVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPYGVLALMTKV 248

Query: 217 IGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTS 276
           +    L  I  L   +   Y  + F +  V GIL      + IK    +   +    ++ 
Sbjct: 249 VATSNLEDIIKLGSFIVASYI-AIFIMFVVHGILLALNGVNPIKYFKKVWPVLTFAFTSR 307

Query: 277 SSESALP-GLMKKMEEAGCHRSIVSMVVPTGYSFNLDG-SNIYITLATLFIS-QATNVPL 333
           SS + +P  +  +  + G    I +     G +   +G + IY  +  + ++      PL
Sbjct: 308 SSAATIPLNIETQTRKLGVPEGIANFAASFGATIGQNGCAGIYPAMLAVMVAPTVGINPL 367

Query: 334 SLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVP-SLPIAGMTLILGVDRFMSECR 392
                 +L+ +  +SS G AGV G A  T AA I L    LP+A + L++ ++  +   R
Sbjct: 368 DPHFIATLIGVVTISSFGVAGVGGGA--TFAALIVLSALGLPVALVGLLISIEPLIDMGR 425

Query: 393 SVTNFIGNAVMTVVVSRWEKKLDPKLFN 420
           +  N  G+     + S+  K+ D +++N
Sbjct: 426 TALNVSGSMTAGTITSKLLKQTDKEIYN 453


>gnl|CDD|29274 cd00222, CollagenBindB, Collagen-binding protein B domain, mediates
           bacterial adherence to collagen; the primary sequence
           has a non-repetitive, collagen-binding A region,
           followed by the repetitive B region; the B region has
           one to four 23 kDa repeat units (B1-B4). The B repeat
           units have been suggested to serve as a `stalk' that
           projects the A region from the bacterial surface and
           thus facilitate bacterial adherence to collagen; each B
           repeat unit has two domains (D1 and D2) placed
           side-by-side; D1 and D2 have similar secondary structure
           and exhibit a unique inverse IgG-like domain fold..
          Length = 187

 Score = 31.2 bits (70), Expect = 0.54
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 296 RSIVSMVVPTGYSFNLDGSNIYITLATLFI 325
            S+  + V  GY    DG++IY T  T FI
Sbjct: 157 YSVEEVTVVDGYKTTYDGNDIYNTKETEFI 186


>gnl|CDD|38871 KOG3667, KOG3667, KOG3667, STAT protein [Transcription, Signal
           transduction mechanisms].
          Length = 682

 Score = 30.7 bits (69), Expect = 0.74
 Identities = 26/122 (21%), Positives = 38/122 (31%), Gaps = 5/122 (4%)

Query: 265 LKEEVLLVLSTSSSESALPGLMK--KMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLAT 322
           L  +  ++ +        P L    K++E      +    +     FN + +N       
Sbjct: 326 LVAKTRVLFTVKRLLVKNPELNYALKVKEIQDKDLLKPNTLRGSRKFNGEITN---NKVM 382

Query: 323 LFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLIL 382
           +          +    LSL  I     KGA  VT      L  T   V  L I   TL L
Sbjct: 383 MEEESNNGSLSAEFRNLSLKEIKRAERKGAESVTEELHAILFETQFTVGGLVIRLFTLSL 442

Query: 383 GV 384
            V
Sbjct: 443 PV 444


>gnl|CDD|29948 cd00955, Transaldolase_like, Transaldolase-like proteins from
           plants and bacteria. Transaldolase is found in the
           non-oxidative branch of the pentose phosphate pathway,
           that catalyze the reversible transfer of a
           dihydroxyacetone group from fructose-6-phosphate to
           erythrose-4-phosphate yielding sedoheptulose-7-phosphate
           and glyceraldehyde-3-phosphate. They are members of the
           class I aldolases, who are characterized by using a
           Schiff-base mechanism for stabilization of the reaction
           intermediates..
          Length = 338

 Score = 28.3 bits (63), Expect = 4.1
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 367 ITLVPSLPIAGMT---LILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPKLFN 420
           +TL+ SL          + G++R +     ++     +V +  VSR +  +D KL  
Sbjct: 150 VTLIFSLEQYEAVAEAYLRGLERRVEGGGDLSQV--ASVASFFVSRVDTLIDKKLDA 204


>gnl|CDD|37624 KOG2413, KOG2413, KOG2413, Xaa-Pro aminopeptidase [Amino acid
           transport and metabolism].
          Length = 606

 Score = 28.3 bits (63), Expect = 4.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 277 SSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNI 316
           S +  +  L KK++E  C   +V+ +    +  NL GS+I
Sbjct: 173 SVDDKVDNLRKKLKEKKCDAFVVTALDEIAWLLNLRGSDI 212


>gnl|CDD|31378 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
           (polynucleotide phosphorylase) [Translation, ribosomal
           structure and biogenesis].
          Length = 692

 Score = 27.1 bits (60), Expect = 10.0
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 201 VMRIAPLGAFGAMSFTIGKYGLSSISNL 228
           V+RI   GAF  +    GK GL  IS L
Sbjct: 627 VVRIVDFGAF--VELLPGKDGLVHISQL 652


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.327    0.141    0.400 

Gapped
Lambda     K      H
   0.267   0.0845    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,904,922
Number of extensions: 268026
Number of successful extensions: 1298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1265
Number of HSP's successfully gapped: 103
Length of query: 426
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 330
Effective length of database: 4,189,273
Effective search space: 1382460090
Effective search space used: 1382460090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.3 bits)