RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter asiaticus str. psy62] (426 letters) >gnl|CDD|31492 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]. Length = 415 Score = 324 bits (832), Expect = 3e-89 Identities = 179/411 (43%), Positives = 268/411 (65%), Gaps = 12/411 (2%) Query: 12 RPPLYKILYIQVLVAIFSGMALGHFVPQIG--VQMQPLGDIFVKTTKMLITPVIFLTVST 69 + LY+QVL+ + G+ +G F+P++G + ++PLGDIF+K KM+I P++F T+ Sbjct: 1 KKSKKLSLYLQVLIGLILGILVGLFLPELGAAIYLKPLGDIFIKLIKMIIIPLVFFTLVL 60 Query: 70 GIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAH 129 GIA + D+K +G++ K + F V + A+ IGL+V N+ +PG G+N+D +L+T + + Sbjct: 61 GIASLGDLKKLGRLGGKTLIYFLVTTTLAIAIGLVVANVLQPGAGINIDPATLDTGAESE 120 Query: 130 IKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEK-SDTIRKCLE 188 + S + F+ D+IP AL GN+LQ L A+LFG++L+ +GEK + E Sbjct: 121 V------SILDFLLDIIPTNIFGALAEGNVLQILFFAILFGLALAALGEKGKPPVENLFE 174 Query: 189 EINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLG 248 ++ +F++ + VMR+AP+G FG M+FT+ KYG S+ +L LV +Y F+ VLG Sbjct: 175 SLSEAMFKVTNFVMRLAPIGVFGLMAFTVAKYGFGSLLSLGKLVLAVYLGLLLFVFVVLG 234 Query: 249 ILAR-FCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEE-AGCHRSIVSMVVPTG 306 +L + FS K + ++ E +LL STSSSE+ LP M+K E+ G +SIVS VVP G Sbjct: 235 LLLKLLSGFSPFKFLRYISEALLLAFSTSSSEATLPVTMEKAEKSLGVPKSIVSFVVPLG 294 Query: 307 YSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAAT 366 Y+FNLDG+ IY TLA LFI+QA +PLSL QL+LLL+AM++SKGAAGV G + LAAT Sbjct: 295 YTFNLDGTAIYQTLAALFIAQAYGIPLSLGQQLTLLLVAMLASKGAAGVPGGGLVVLAAT 354 Query: 367 ITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPK 417 ++ V LP+ G+ LILG+DRF+ R+ TN G+AV TVVV++WE + Sbjct: 355 LSSVG-LPLEGLALILGIDRFLDMARTATNVTGDAVATVVVAKWEGEEKAD 404 >gnl|CDD|144095 pfam00375, SDF, Sodium:dicarboxylate symporter family. Length = 387 Score = 298 bits (766), Expect = 2e-81 Identities = 136/394 (34%), Positives = 235/394 (59%), Gaps = 9/394 (2%) Query: 19 LYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMK 78 L +Q+L+ + G+ LG F P++ ++PLGDIF+ KML+ P++F ++ +GIA + D K Sbjct: 1 LTLQILIGLVLGVLLGLFFPEVAGWLKPLGDIFINLLKMLVVPLVFFSIVSGIASLGDGK 60 Query: 79 VIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSF 138 +G++ K + F V + A +IGL+V + +PG+G+ + + ++S + S Sbjct: 61 KLGKLGGKTLLYFLVTTAIAAIIGLLVALLFQPGVGLLISAAA------ESAQASESPSL 114 Query: 139 IGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMV 198 + F+ ++IP +AL GN+LQ ++ A+LFGI+L+ +GEK + K LE +N + ++V Sbjct: 115 LDFLLNIIPSNIFAALAEGNVLQVIVFAILFGIALAALGEKGKPLLKFLESLNEIIMKVV 174 Query: 199 SIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARF-CRFS 257 + VM++AP+G F ++ T+G +GL ++ +L V +Y A + V +L +F + Sbjct: 175 NWVMKLAPIGVFALIANTVGTFGLGTLGSLGKFVLTVYLALAIHLFVVYPLLLKFLTGLN 234 Query: 258 IIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEA-GCHRSIVSMVVPTGYSFNLDGSNI 316 K + + +L ST+SS + LP ++ E+ G +SI S V+P G + N+DG+ I Sbjct: 235 PFKFLKKILPALLTAFSTASSAATLPVTLECAEKNLGVSKSIASFVLPLGATINMDGTAI 294 Query: 317 YITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIA 376 Y+ +A +FI+QA V LSL L L+L A ++S GAAGV G + LA ++ + LP+ Sbjct: 295 YLAVAAIFIAQAYGVDLSLGQLLLLILTATLASIGAAGVPGGGLVALALVLSALG-LPVE 353 Query: 377 GMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRW 410 G+ LIL +DR + R+ N G+AV V+V++ Sbjct: 354 GIALILAIDRILDMFRTALNVTGDAVAAVIVAKL 387 >gnl|CDD|38991 KOG3787, KOG3787, KOG3787, Glutamate/aspartate and neutral amino acid transporters [Amino acid transport and metabolism]. Length = 507 Score = 127 bits (320), Expect = 7e-30 Identities = 100/447 (22%), Positives = 195/447 (43%), Gaps = 66/447 (14%) Query: 19 LYIQVLVAIFSGMALGHFVPQIGVQMQPL------GDIFVKTTKMLITPVIFLTVSTGIA 72 L + + + G+ LG + + + + G++ ++ KM+I P+I ++ +G+A Sbjct: 18 LLLLTVSGVVLGVLLGFLLRPLSLSPDEIMYISFPGELLMRMLKMMILPLIVSSLISGLA 77 Query: 73 RMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKS 132 + D K G++ +A+ + ++ A+++G+ + I PG L E + Sbjct: 78 SL-DAKASGRLGMRAVVYYMSTTIIAVILGIALVLIIHPGDPTKK--NELGREGLIDSNV 134 Query: 133 SHAKSFIGFMQDMIPDTALSA-------------------------------LTSG-NIL 160 S +F+ +++M P+ + A T G N+L Sbjct: 135 STLDTFLDLIRNMFPENLVQATFQQYQTKYKPVTKASPGNATEEALPKGVPGYTDGMNVL 194 Query: 161 QTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAF---------- 210 ++ ++FGI + +GEK + +N + ++VS +M +P+G Sbjct: 195 GLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIMWYSPVGILFLIAGKILEM 254 Query: 211 ---GAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKE 267 G + +G Y + V F +L ++ + R + + I L + Sbjct: 255 EDLGVTARQLGMY--------VVTVILGLFIHGFIVLPLIYFV--VTRKNPFRFIAGLLQ 304 Query: 268 EVLLVLSTSSSESALPGLMKKMEEA-GCHRSIVSMVVPTGYSFNLDGSNIYITLATLFIS 326 + T+SS + LP K +EE G + + V+P G + N+DG+ +Y +A +FI+ Sbjct: 305 ALATAFGTASSSATLPITFKCLEENLGVDKRVTRFVLPVGATINMDGTALYEAVAAIFIA 364 Query: 327 QATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDR 386 Q NV LS +++ + A +S GAAGV + +T+ +T V LP ++LI VD Sbjct: 365 QLNNVELSFGQIVTISITATAASIGAAGVPQAGLVTMLIVLTAV-GLPTKDISLIFAVDW 423 Query: 387 FMSECRSVTNFIGNAVMTVVVSRWEKK 413 + R+ N +G+A+ +V KK Sbjct: 424 LLDRLRTTVNVLGDALGAGIVEHLSKK 450 >gnl|CDD|33431 COG3633, SstT, Na+/serine symporter [Amino acid transport and metabolism]. Length = 407 Score = 96.1 bits (239), Expect = 2e-20 Identities = 86/373 (23%), Positives = 170/373 (45%), Gaps = 19/373 (5%) Query: 19 LYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMK 78 L Q+L+ + G+ L P + LG +FV K + ++F+ V IA K + Sbjct: 16 LVKQILIGLVLGILLAIISPPAAEAVGLLGTLFVGALKAVAPVLVFILVMASIANHKKGQ 75 Query: 79 VIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSF 138 + + + + ++ F+ + ++ + A P + L S + S + Sbjct: 76 ---KTNIRPIIVLYLLGTFSAALVAVIASFAFP---STLVLASSAGDISP--PSGIVEVL 127 Query: 139 IGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMV 198 + ++ D ++AL + N + L A+ G++L SDT + + +++ V ++V Sbjct: 128 KSLLMSLV-DNPINALLNANYIGILAWAIGLGLALR---HASDTTKNLVNDLSEAVSKIV 183 Query: 199 SIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARF-CRFS 257 +V+R AP+G FG ++ T+ + G ++ L+ L F L V ++ + R + Sbjct: 184 KVVIRFAPIGIFGLVASTLAETGFGALWGYAQLLAVLVGCMLFVALVVNPLIVYWKIRRN 243 Query: 258 IIKLI-IFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNI 316 L+ L+E + T SS + +P M ++ G S+ +P G + N+ G+ I Sbjct: 244 PYPLVLTCLRESGVTAFFTRSSAANIPVNMALCKKLGLDEDTYSVSIPLGATINMAGAAI 303 Query: 317 YITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSA--FITLAATITLVPS-- 372 IT+ TL +P+ L L L ++A V + GA+GV G + I LA ++ + + Sbjct: 304 TITVLTLAAVHTLGIPVDLPTALLLSVVASVCACGASGVAGGSLLLIPLACSLFGISNDV 363 Query: 373 -LPIAGMTLILGV 384 + + + I+GV Sbjct: 364 AMQVVAVGFIIGV 376 >gnl|CDD|32008 COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]. Length = 458 Score = 89.2 bits (221), Expect = 2e-18 Identities = 81/388 (20%), Positives = 170/388 (43%), Gaps = 17/388 (4%) Query: 47 LGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVG 106 +G+ +V+ +M++ P++F+++ + IA++ + +G+I + + A +IG++V Sbjct: 69 VGNGYVRLLQMIVMPLVFISILSAIAKLDNASKLGKISLLTIGTLLFTTAIAALIGILVA 128 Query: 107 N---IAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGN---IL 160 + G+ + +E ++ + + +IP + LT N I+ Sbjct: 129 LLFGLTAEGLVQGDAETARISEIQTYVGKVADLTIPQLILSLIPKNPFADLTGANPTSII 188 Query: 161 QTLIVALLFGISLSLVG----EKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFT 216 +I A GI+ + EK + + ++ + V ++V +V+R+ P G M+ Sbjct: 189 AVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPYGVLALMTKV 248 Query: 217 IGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTS 276 + L I L + Y + F + V GIL + IK + + ++ Sbjct: 249 VATSNLEDIIKLGSFIVASYI-AIFIMFVVHGILLALNGVNPIKYFKKVWPVLTFAFTSR 307 Query: 277 SSESALP-GLMKKMEEAGCHRSIVSMVVPTGYSFNLDG-SNIYITLATLFIS-QATNVPL 333 SS + +P + + + G I + G + +G + IY + + ++ PL Sbjct: 308 SSAATIPLNIETQTRKLGVPEGIANFAASFGATIGQNGCAGIYPAMLAVMVAPTVGINPL 367 Query: 334 SLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVP-SLPIAGMTLILGVDRFMSECR 392 +L+ + +SS G AGV G A T AA I L LP+A + L++ ++ + R Sbjct: 368 DPHFIATLIGVVTISSFGVAGVGGGA--TFAALIVLSALGLPVALVGLLISIEPLIDMGR 425 Query: 393 SVTNFIGNAVMTVVVSRWEKKLDPKLFN 420 + N G+ + S+ K+ D +++N Sbjct: 426 TALNVSGSMTAGTITSKLLKQTDKEIYN 453 >gnl|CDD|29274 cd00222, CollagenBindB, Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.. Length = 187 Score = 31.2 bits (70), Expect = 0.54 Identities = 12/30 (40%), Positives = 16/30 (53%) Query: 296 RSIVSMVVPTGYSFNLDGSNIYITLATLFI 325 S+ + V GY DG++IY T T FI Sbjct: 157 YSVEEVTVVDGYKTTYDGNDIYNTKETEFI 186 >gnl|CDD|38871 KOG3667, KOG3667, KOG3667, STAT protein [Transcription, Signal transduction mechanisms]. Length = 682 Score = 30.7 bits (69), Expect = 0.74 Identities = 26/122 (21%), Positives = 38/122 (31%), Gaps = 5/122 (4%) Query: 265 LKEEVLLVLSTSSSESALPGLMK--KMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLAT 322 L + ++ + P L K++E + + FN + +N Sbjct: 326 LVAKTRVLFTVKRLLVKNPELNYALKVKEIQDKDLLKPNTLRGSRKFNGEITN---NKVM 382 Query: 323 LFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLIL 382 + + LSL I KGA VT L T V L I TL L Sbjct: 383 MEEESNNGSLSAEFRNLSLKEIKRAERKGAESVTEELHAILFETQFTVGGLVIRLFTLSL 442 Query: 383 GV 384 V Sbjct: 443 PV 444 >gnl|CDD|29948 cd00955, Transaldolase_like, Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.. Length = 338 Score = 28.3 bits (63), Expect = 4.1 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Query: 367 ITLVPSLPIAGMT---LILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPKLFN 420 +TL+ SL + G++R + ++ +V + VSR + +D KL Sbjct: 150 VTLIFSLEQYEAVAEAYLRGLERRVEGGGDLSQV--ASVASFFVSRVDTLIDKKLDA 204 >gnl|CDD|37624 KOG2413, KOG2413, KOG2413, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]. Length = 606 Score = 28.3 bits (63), Expect = 4.3 Identities = 12/40 (30%), Positives = 21/40 (52%) Query: 277 SSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNI 316 S + + L KK++E C +V+ + + NL GS+I Sbjct: 173 SVDDKVDNLRKKLKEKKCDAFVVTALDEIAWLLNLRGSDI 212 >gnl|CDD|31378 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]. Length = 692 Score = 27.1 bits (60), Expect = 10.0 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Query: 201 VMRIAPLGAFGAMSFTIGKYGLSSISNL 228 V+RI GAF + GK GL IS L Sbjct: 627 VVRIVDFGAF--VELLPGKDGLVHISQL 652 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.327 0.141 0.400 Gapped Lambda K H 0.267 0.0845 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,904,922 Number of extensions: 268026 Number of successful extensions: 1298 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1265 Number of HSP's successfully gapped: 103 Length of query: 426 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 330 Effective length of database: 4,189,273 Effective search space: 1382460090 Effective search space used: 1382460090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 59 (26.3 bits)