BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter asiaticus str. psy62] (426 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter asiaticus str. psy62] Length = 426 Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/426 (100%), Positives = 426/426 (100%) Query: 1 MKESVQVHGDIRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLIT 60 MKESVQVHGDIRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLIT Sbjct: 1 MKESVQVHGDIRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLIT 60 Query: 61 PVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLK 120 PVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLK Sbjct: 61 PVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLK 120 Query: 121 SLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKS 180 SLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKS Sbjct: 121 SLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKS 180 Query: 181 DTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSA 240 DTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSA Sbjct: 181 DTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSA 240 Query: 241 FFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVS 300 FFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVS Sbjct: 241 FFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVS 300 Query: 301 MVVPTGYSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAF 360 MVVPTGYSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAF Sbjct: 301 MVVPTGYSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAF 360 Query: 361 ITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPKLFN 420 ITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPKLFN Sbjct: 361 ITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPKLFN 420 Query: 421 KYIGIE 426 KYIGIE Sbjct: 421 KYIGIE 426 >gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 80/384 (20%), Positives = 173/384 (45%), Gaps = 38/384 (9%) Query: 49 DIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIV--- 105 ++FV+ K + P+I L++ +++ + +G+++ K +F + +M A + L Sbjct: 46 NVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGL 105 Query: 106 ----GNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQ 161 I KP + +N+ +F ++ ++IP+ ++ ++ Sbjct: 106 ISPSNMITKPDVAVNIG----------------KMNFWNYVANLIPNNVVAPFLESQVIG 149 Query: 162 TLIVALLFGISLSLVGE---KSDTIRKCLEEINFPVFRMVSIVMRIAP--LGAFGAMSFT 216 L+++ GI+ + + KS TI E I+ + + VM+I P LG+F A++ Sbjct: 150 ILLISGSIGIATHFITDKHIKSSTIV-FFEGIHSIFLTITNWVMKIIPIALGSFIAVTIL 208 Query: 217 IGKYGL--SSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLS 274 K GL S + + +V F +L V+ + F +I+K + + + Sbjct: 209 QFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTIVKGMF---PALAVAFF 265 Query: 275 TSSSESALPGLMKKMEEA-GCHRSIVSMVVPTGYSFNLDGSNIYITLATLFISQATNVPL 333 + SS LP M+ E+ + ++P S N++G +I + +++ Q + Sbjct: 266 SKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGIEA 325 Query: 334 SLTDQ-LSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSECR 392 + + L +L+ +++S+ G AGV F L+A++ +PI M++IL + Sbjct: 326 TFSTLFLWILMASVISAIGTAGVPMGCFF-LSASLLTNMGIPINIMSMILPFYSIVDMFE 384 Query: 393 SVTNFIGNAVMTVVVSR-WEKKLD 415 + N ++ +TV+V++ + K D Sbjct: 385 TTLNVWSDSCVTVIVNKSYPKSSD 408 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.327 0.141 0.400 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 241,574 Number of Sequences: 1233 Number of extensions: 9349 Number of successful extensions: 36 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 6 length of query: 426 length of database: 328,796 effective HSP length: 76 effective length of query: 350 effective length of database: 235,088 effective search space: 82280800 effective search space used: 82280800 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 40 (20.0 bits)