BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter
DctA [Candidatus Liberibacter asiaticus str. psy62]
         (426 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 426

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/426 (100%), Positives = 426/426 (100%)

Query: 1   MKESVQVHGDIRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLIT 60
           MKESVQVHGDIRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLIT
Sbjct: 1   MKESVQVHGDIRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLIT 60

Query: 61  PVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLK 120
           PVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLK
Sbjct: 61  PVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLK 120

Query: 121 SLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKS 180
           SLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKS
Sbjct: 121 SLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKS 180

Query: 181 DTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSA 240
           DTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSA
Sbjct: 181 DTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSA 240

Query: 241 FFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVS 300
           FFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVS
Sbjct: 241 FFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVS 300

Query: 301 MVVPTGYSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAF 360
           MVVPTGYSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAF
Sbjct: 301 MVVPTGYSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAF 360

Query: 361 ITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPKLFN 420
           ITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPKLFN
Sbjct: 361 ITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPKLFN 420

Query: 421 KYIGIE 426
           KYIGIE
Sbjct: 421 KYIGIE 426


>gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 420

 Score = 56.2 bits (134), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 173/384 (45%), Gaps = 38/384 (9%)

Query: 49  DIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIV--- 105
           ++FV+  K +  P+I L++   +++    + +G+++ K +F   + +M A  + L     
Sbjct: 46  NVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGL 105

Query: 106 ----GNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQ 161
                 I KP + +N+                   +F  ++ ++IP+  ++      ++ 
Sbjct: 106 ISPSNMITKPDVAVNIG----------------KMNFWNYVANLIPNNVVAPFLESQVIG 149

Query: 162 TLIVALLFGISLSLVGE---KSDTIRKCLEEINFPVFRMVSIVMRIAP--LGAFGAMSFT 216
            L+++   GI+   + +   KS TI    E I+     + + VM+I P  LG+F A++  
Sbjct: 150 ILLISGSIGIATHFITDKHIKSSTIV-FFEGIHSIFLTITNWVMKIIPIALGSFIAVTIL 208

Query: 217 IGKYGL--SSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLS 274
             K GL  S +   + +V        F +L V+  +  F   +I+K +      + +   
Sbjct: 209 QFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTIVKGMF---PALAVAFF 265

Query: 275 TSSSESALPGLMKKMEEA-GCHRSIVSMVVPTGYSFNLDGSNIYITLATLFISQATNVPL 333
           + SS   LP  M+  E+       +   ++P   S N++G   +I +  +++ Q   +  
Sbjct: 266 SKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGIEA 325

Query: 334 SLTDQ-LSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSECR 392
           + +   L +L+ +++S+ G AGV    F  L+A++     +PI  M++IL     +    
Sbjct: 326 TFSTLFLWILMASVISAIGTAGVPMGCFF-LSASLLTNMGIPINIMSMILPFYSIVDMFE 384

Query: 393 SVTNFIGNAVMTVVVSR-WEKKLD 415
           +  N   ++ +TV+V++ + K  D
Sbjct: 385 TTLNVWSDSCVTVIVNKSYPKSSD 408


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.141    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,574
Number of Sequences: 1233
Number of extensions: 9349
Number of successful extensions: 36
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 6
length of query: 426
length of database: 328,796
effective HSP length: 76
effective length of query: 350
effective length of database: 235,088
effective search space: 82280800
effective search space used: 82280800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 40 (20.0 bits)